Query 045318
Match_columns 1388
No_of_seqs 725 out of 6319
Neff 10.2
Searched_HMMs 29240
Date Mon Mar 25 21:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045318.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045318hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1E-45 3.6E-50 476.7 30.5 649 566-1382 51-766 (768)
2 3rgz_A Protein brassinosteroid 100.0 5E-42 1.7E-46 442.4 26.9 663 548-1338 57-741 (768)
3 2a5y_B CED-4; apoptosis; HET: 100.0 1.8E-38 6.2E-43 389.6 28.4 293 184-495 131-473 (549)
4 1ziw_A TOLL-like receptor 3; i 100.0 1.2E-33 4E-38 362.2 40.2 94 568-664 7-102 (680)
5 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-33 1.5E-37 357.0 33.1 452 536-1060 25-490 (680)
6 3t6q_A CD180 antigen; protein- 100.0 4.6E-31 1.6E-35 333.4 35.1 200 943-1171 255-459 (606)
7 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-31 8.8E-36 335.7 31.1 518 509-1149 30-557 (606)
8 3vq2_A TLR4, TOLL-like recepto 100.0 3.5E-31 1.2E-35 334.5 31.0 371 565-1061 32-410 (606)
9 3j0a_A TOLL-like receptor 5; m 100.0 1.3E-29 4.4E-34 330.2 40.6 286 942-1283 266-557 (844)
10 1vt4_I APAF-1 related killer D 100.0 1.8E-31 6.1E-36 325.3 18.4 268 182-487 129-437 (1221)
11 3j0a_A TOLL-like receptor 5; m 100.0 6.8E-30 2.3E-34 332.9 34.6 266 939-1261 287-560 (844)
12 3t6q_A CD180 antigen; protein- 100.0 1.1E-30 3.7E-35 330.1 25.8 515 508-1084 30-558 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-29 8.4E-34 313.7 26.1 464 565-1172 26-508 (549)
14 4ecn_A Leucine-rich repeat pro 100.0 6E-29 2.1E-33 315.5 23.6 364 598-1084 435-838 (876)
15 4eco_A Uncharacterized protein 100.0 5.7E-29 1.9E-33 312.7 22.5 279 745-1084 304-598 (636)
16 2z63_A TOLL-like receptor 4, v 100.0 4.7E-28 1.6E-32 304.0 27.2 148 509-662 26-176 (570)
17 3sfz_A APAF-1, apoptotic pepti 100.0 2.4E-28 8.4E-33 337.1 26.3 283 177-493 120-452 (1249)
18 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-27 8.4E-32 293.0 29.8 106 943-1061 303-410 (520)
19 4eco_A Uncharacterized protein 100.0 4.3E-29 1.5E-33 313.7 11.2 106 940-1062 486-599 (636)
20 4ecn_A Leucine-rich repeat pro 100.0 6.1E-28 2.1E-32 306.3 21.3 358 575-1062 435-839 (876)
21 2z81_A CD282 antigen, TOLL-lik 100.0 2.4E-27 8.3E-32 295.6 24.8 492 568-1215 8-510 (549)
22 2z63_A TOLL-like receptor 4, v 100.0 6.8E-27 2.3E-31 293.4 27.8 98 566-664 29-129 (570)
23 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.9E-26 2.4E-30 282.1 28.9 178 853-1083 276-460 (562)
24 2z7x_B TOLL-like receptor 1, v 99.9 8.9E-26 3E-30 279.1 27.4 439 536-1060 21-478 (520)
25 1z6t_A APAF-1, apoptotic prote 99.9 2.6E-26 9E-31 287.6 22.5 275 180-490 123-449 (591)
26 4g8a_A TOLL-like receptor 4; l 99.9 4E-25 1.4E-29 281.9 27.2 97 566-664 53-153 (635)
27 4g8a_A TOLL-like receptor 4; l 99.9 7.6E-25 2.6E-29 279.3 29.3 508 509-1083 50-577 (635)
28 1jl5_A Outer protein YOPM; leu 99.9 2.3E-24 7.9E-29 257.9 21.5 382 563-1084 9-407 (454)
29 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.6E-24 1.6E-28 265.6 23.8 438 536-1061 52-508 (562)
30 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.9E-27 245.6 26.8 82 561-646 64-145 (466)
31 1jl5_A Outer protein YOPM; leu 99.9 3.5E-23 1.2E-27 247.7 20.6 252 714-1084 174-427 (454)
32 3v47_A TOLL-like receptor 5B a 99.9 7.4E-23 2.5E-27 248.4 23.8 83 565-647 30-115 (455)
33 3bz5_A Internalin-J, INLJ; leu 99.9 1E-23 3.5E-28 252.6 14.8 358 531-1044 37-394 (457)
34 3v47_A TOLL-like receptor 5B a 99.9 3.8E-23 1.3E-27 251.0 18.7 124 536-664 30-159 (455)
35 1o6v_A Internalin A; bacterial 99.9 2.9E-22 9.9E-27 242.9 20.3 346 563-1038 44-389 (466)
36 3bz5_A Internalin-J, INLJ; leu 99.9 4.6E-22 1.6E-26 238.2 15.9 355 510-1021 41-395 (457)
37 4fmz_A Internalin; leucine ric 99.9 1.3E-21 4.5E-26 227.8 18.9 97 562-664 41-137 (347)
38 2id5_A Lingo-1, leucine rich r 99.9 8.3E-21 2.8E-25 231.5 23.5 97 565-662 32-131 (477)
39 3o6n_A APL1; leucine-rich repe 99.8 2.2E-20 7.5E-25 221.0 20.8 90 563-653 43-134 (390)
40 3oja_B Anopheles plasmodium-re 99.8 3E-20 1E-24 232.2 20.2 101 563-664 49-152 (597)
41 3o6n_A APL1; leucine-rich repe 99.8 1.9E-20 6.4E-25 221.6 17.2 303 534-908 43-351 (390)
42 2id5_A Lingo-1, leucine rich r 99.8 4.1E-20 1.4E-24 225.4 20.7 124 536-664 32-157 (477)
43 3oja_B Anopheles plasmodium-re 99.8 3.7E-20 1.3E-24 231.4 16.8 303 534-908 49-357 (597)
44 4fmz_A Internalin; leucine ric 99.8 1.6E-19 5.5E-24 210.1 19.5 300 511-886 44-344 (347)
45 4fcg_A Uncharacterized protein 99.8 9.2E-20 3.1E-24 208.6 14.5 230 563-886 79-309 (328)
46 1xku_A Decorin; proteoglycan, 99.8 6.8E-19 2.3E-23 202.8 21.7 195 565-805 31-227 (330)
47 2ft3_A Biglycan; proteoglycan, 99.8 7.2E-19 2.5E-23 202.7 19.1 193 565-804 33-227 (332)
48 1ogq_A PGIP-2, polygalacturona 99.8 4E-19 1.4E-23 202.2 11.0 230 557-805 68-302 (313)
49 1ogq_A PGIP-2, polygalacturona 99.8 3.1E-19 1.1E-23 203.1 7.4 250 565-868 50-306 (313)
50 4fcg_A Uncharacterized protein 99.8 8.7E-19 3E-23 200.5 11.0 123 535-664 80-211 (328)
51 2ft3_A Biglycan; proteoglycan, 99.8 7.6E-18 2.6E-22 194.1 17.2 273 536-863 54-330 (332)
52 1xku_A Decorin; proteoglycan, 99.7 1.1E-17 3.7E-22 192.8 16.6 249 536-835 52-304 (330)
53 3g06_A SSPH2 (leucine-rich rep 99.7 2.7E-17 9.2E-22 202.2 20.5 78 565-652 40-117 (622)
54 3ogk_B Coronatine-insensitive 99.7 8.7E-20 3E-24 229.7 -1.9 202 562-802 109-326 (592)
55 2z80_A TOLL-like receptor 2, v 99.7 3.5E-17 1.2E-21 190.3 17.6 77 568-646 34-111 (353)
56 1z7x_W Ribonuclease inhibitor; 99.7 8.2E-20 2.8E-24 222.1 -6.7 94 942-1038 313-412 (461)
57 3g06_A SSPH2 (leucine-rich rep 99.7 2.7E-15 9.2E-20 184.5 25.5 254 1001-1335 41-295 (622)
58 2z66_A Variable lymphocyte rec 99.7 1.1E-16 3.7E-21 182.2 11.7 224 536-805 28-259 (306)
59 3ogk_B Coronatine-insensitive 99.7 1.3E-17 4.4E-22 209.9 3.6 132 940-1082 110-252 (592)
60 2z80_A TOLL-like receptor 2, v 99.7 1.8E-16 6.3E-21 184.3 11.7 251 537-807 53-314 (353)
61 3o53_A Protein LRIM1, AGAP0063 99.7 4.5E-17 1.6E-21 185.8 6.3 255 557-872 26-281 (317)
62 1z7x_W Ribonuclease inhibitor; 99.7 3.1E-18 1.1E-22 208.1 -3.7 93 939-1038 338-441 (461)
63 3zyj_A Leucine-rich repeat-con 99.6 4.7E-16 1.6E-20 186.7 14.7 198 565-805 64-266 (440)
64 3zyi_A Leucine-rich repeat-con 99.6 4.1E-16 1.4E-20 187.9 14.1 198 565-805 75-277 (452)
65 3o53_A Protein LRIM1, AGAP0063 99.6 1.9E-16 6.5E-21 180.7 8.8 80 565-646 10-91 (317)
66 1wwl_A Monocyte differentiatio 99.6 2.1E-16 7.1E-21 179.9 9.1 202 563-806 93-308 (312)
67 2z66_A Variable lymphocyte rec 99.6 5.9E-16 2E-20 176.1 12.9 98 565-664 28-131 (306)
68 3zyj_A Leucine-rich repeat-con 99.6 7.9E-16 2.7E-20 184.7 14.1 224 536-806 64-291 (440)
69 3zyi_A Leucine-rich repeat-con 99.6 8.6E-16 3E-20 185.1 13.2 222 536-805 75-301 (452)
70 2p1m_B Transport inhibitor res 99.6 5E-17 1.7E-21 204.6 0.2 93 939-1035 153-246 (594)
71 3oja_A Leucine-rich immune mol 99.6 1.1E-15 3.7E-20 184.8 11.1 79 562-646 31-110 (487)
72 2p1m_B Transport inhibitor res 99.6 6.8E-17 2.3E-21 203.4 -1.6 368 939-1335 102-517 (594)
73 1ozn_A Reticulon 4 receptor; N 99.6 1.2E-15 4.2E-20 171.3 8.8 202 565-807 32-238 (285)
74 3oja_A Leucine-rich immune mol 99.6 1.8E-15 6.2E-20 182.8 10.1 217 534-806 32-249 (487)
75 1ozn_A Reticulon 4 receptor; N 99.6 1.1E-14 3.9E-19 163.4 15.4 195 568-805 14-212 (285)
76 1wwl_A Monocyte differentiatio 99.6 8.8E-16 3E-20 174.7 6.0 225 533-805 40-285 (312)
77 2z62_A TOLL-like receptor 4, v 99.6 6.5E-15 2.2E-19 164.6 12.5 205 565-806 28-236 (276)
78 3rfs_A Internalin B, repeat mo 99.5 2E-14 7E-19 159.7 14.2 101 562-664 38-138 (272)
79 1p9a_G Platelet glycoprotein I 99.5 4E-14 1.4E-18 158.4 15.9 87 709-805 120-206 (290)
80 1h6u_A Internalin H; cell adhe 99.5 1.7E-14 5.7E-19 163.4 12.2 191 563-806 39-229 (308)
81 2o6q_A Variable lymphocyte rec 99.5 8E-14 2.7E-18 154.8 16.7 86 710-805 130-216 (270)
82 3qfl_A MLA10; coiled-coil, (CC 99.5 1.6E-14 5.5E-19 132.8 8.4 79 12-90 2-82 (115)
83 2xwt_C Thyrotropin receptor; s 99.5 1.2E-13 4E-18 150.5 16.2 209 1123-1360 20-239 (239)
84 4glp_A Monocyte differentiatio 99.5 1.7E-13 5.9E-18 155.6 15.0 206 563-806 89-306 (310)
85 4ay9_X Follicle-stimulating ho 99.5 7.1E-13 2.4E-17 153.3 20.1 221 1001-1258 31-256 (350)
86 1p9a_G Platelet glycoprotein I 99.5 1.4E-13 4.7E-18 154.1 13.2 201 532-784 6-208 (290)
87 2ast_B S-phase kinase-associat 99.5 6.1E-15 2.1E-19 170.5 1.5 82 565-646 70-153 (336)
88 2z62_A TOLL-like receptor 4, v 99.5 1.1E-13 3.8E-18 154.5 11.1 208 536-786 28-239 (276)
89 2xwt_C Thyrotropin receptor; s 99.5 5E-13 1.7E-17 145.5 15.8 198 1001-1237 32-238 (239)
90 1h6u_A Internalin H; cell adhe 99.4 1.6E-13 5.6E-18 155.2 10.9 194 533-785 38-231 (308)
91 2qen_A Walker-type ATPase; unk 99.4 8.7E-13 3E-17 153.4 17.0 284 179-487 10-349 (350)
92 3rfs_A Internalin B, repeat mo 99.4 2.2E-13 7.4E-18 151.4 10.8 124 532-664 37-162 (272)
93 2ca6_A RAN GTPase-activating p 99.4 2.1E-14 7E-19 169.2 2.2 236 531-805 27-314 (386)
94 2o6q_A Variable lymphocyte rec 99.4 7.7E-13 2.6E-17 146.9 14.4 180 565-784 37-218 (270)
95 4ay9_X Follicle-stimulating ho 99.4 3.9E-12 1.3E-16 147.1 19.0 223 942-1233 30-254 (350)
96 3m19_A Variable lymphocyte rec 99.4 1.9E-12 6.7E-17 141.8 15.1 172 566-805 15-190 (251)
97 2ca6_A RAN GTPase-activating p 99.4 3.1E-14 1.1E-18 167.7 0.5 213 557-805 24-285 (386)
98 1w5s_A Origin recognition comp 99.4 7.2E-12 2.5E-16 149.2 18.3 207 180-393 21-266 (412)
99 2ast_B S-phase kinase-associat 99.4 2.6E-13 8.9E-18 156.7 5.0 253 567-875 49-314 (336)
100 1h6t_A Internalin B; cell adhe 99.3 1.9E-12 6.4E-17 145.0 11.3 169 562-805 43-211 (291)
101 3goz_A Leucine-rich repeat-con 99.3 1.4E-13 4.6E-18 160.3 0.8 100 548-647 5-121 (362)
102 4glp_A Monocyte differentiatio 99.3 4.6E-12 1.6E-16 143.8 12.1 203 565-805 64-283 (310)
103 4ezg_A Putative uncharacterize 99.3 1.9E-12 6.5E-17 135.8 8.0 84 562-647 41-124 (197)
104 3cvr_A Invasion plasmid antige 99.3 3.3E-12 1.1E-16 154.9 10.3 183 566-813 60-249 (571)
105 2fna_A Conserved hypothetical 99.3 2E-11 6.9E-16 142.3 15.6 276 179-485 11-355 (357)
106 1m9s_A Internalin B; cell inva 99.3 5.1E-12 1.7E-16 155.3 10.3 170 562-806 40-209 (605)
107 1h6t_A Internalin B; cell adhe 99.2 1.3E-11 4.5E-16 138.1 10.7 120 532-664 42-161 (291)
108 2o6s_A Variable lymphocyte rec 99.2 3E-11 1E-15 128.1 12.1 77 568-646 10-87 (208)
109 1xeu_A Internalin C; cellular 99.2 4.2E-12 1.5E-16 139.6 5.7 167 563-805 17-183 (263)
110 3goz_A Leucine-rich repeat-con 99.2 2.2E-12 7.4E-17 150.1 0.9 82 569-650 2-95 (362)
111 2v9t_B SLIT homolog 2 protein 99.2 1.1E-10 3.9E-15 124.3 13.8 77 568-646 14-91 (220)
112 3m19_A Variable lymphocyte rec 99.2 4.3E-11 1.5E-15 131.0 10.7 148 510-664 34-184 (251)
113 3cvr_A Invasion plasmid antige 99.2 2.5E-11 8.5E-16 147.2 9.4 188 537-788 60-247 (571)
114 1m9s_A Internalin B; cell inva 99.2 5.1E-11 1.7E-15 146.5 11.4 120 532-664 39-158 (605)
115 2o6s_A Variable lymphocyte rec 99.2 3.5E-11 1.2E-15 127.6 7.8 99 565-664 28-129 (208)
116 3e6j_A Variable lymphocyte rec 99.1 1.5E-10 5.3E-15 124.3 12.8 77 567-646 21-99 (229)
117 4ezg_A Putative uncharacterize 99.1 1.4E-10 4.7E-15 121.5 11.9 129 939-1083 41-169 (197)
118 1dce_A Protein (RAB geranylger 99.1 2.6E-12 8.7E-17 157.1 -1.7 100 562-664 346-468 (567)
119 2qby_B CDC6 homolog 3, cell di 99.1 3.9E-10 1.3E-14 132.6 17.0 224 181-411 20-269 (384)
120 2v70_A SLIT-2, SLIT homolog 2 99.1 1.6E-10 5.4E-15 123.2 12.1 77 568-646 14-92 (220)
121 4b8c_D Glucose-repressible alc 99.1 1.8E-11 6E-16 154.9 4.7 107 556-664 215-321 (727)
122 1njg_A DNA polymerase III subu 99.1 8E-10 2.7E-14 121.1 17.3 197 181-395 23-230 (250)
123 2xot_A Amphoterin-induced prot 99.1 7.7E-11 2.6E-15 136.7 9.1 77 568-646 21-99 (361)
124 2v9t_B SLIT homolog 2 protein 99.1 8.3E-11 2.8E-15 125.4 8.1 124 536-664 32-157 (220)
125 2v1u_A Cell division control p 99.1 1E-09 3.6E-14 129.3 17.7 197 181-387 19-243 (387)
126 2v70_A SLIT-2, SLIT homolog 2 99.1 1.7E-10 5.9E-15 122.9 9.5 119 547-665 38-159 (220)
127 2ell_A Acidic leucine-rich nuc 99.1 7.9E-11 2.7E-15 119.9 6.6 123 536-666 24-154 (168)
128 3e6j_A Variable lymphocyte rec 99.1 1.3E-10 4.5E-15 124.8 8.6 122 536-664 40-164 (229)
129 2je0_A Acidic leucine-rich nuc 99.1 5.4E-11 1.9E-15 118.3 4.6 121 536-664 17-145 (149)
130 1xeu_A Internalin C; cellular 99.1 2.4E-10 8.1E-15 125.6 9.7 97 561-664 37-133 (263)
131 2ell_A Acidic leucine-rich nuc 99.0 3.7E-10 1.3E-14 114.9 8.4 135 509-654 22-165 (168)
132 1a9n_A U2A', U2A'; complex (nu 99.0 2.1E-10 7.1E-15 117.6 6.4 127 530-666 13-147 (176)
133 2chg_A Replication factor C sm 99.0 8E-09 2.7E-13 111.1 18.3 185 181-393 17-204 (226)
134 4b8c_D Glucose-repressible alc 99.0 4.4E-11 1.5E-15 151.2 -0.0 119 531-656 219-337 (727)
135 1fnn_A CDC6P, cell division co 99.0 6.3E-09 2.1E-13 122.6 18.1 205 181-391 17-245 (389)
136 2qby_A CDC6 homolog 1, cell di 99.0 1.8E-09 6.2E-14 127.2 13.2 202 180-390 19-242 (386)
137 2je0_A Acidic leucine-rich nuc 99.0 7.1E-10 2.4E-14 110.1 7.5 127 510-644 16-149 (149)
138 1w8a_A SLIT protein; signaling 98.9 9.2E-10 3.1E-14 114.5 8.1 95 568-664 11-107 (192)
139 2wfh_A SLIT homolog 2 protein 98.9 1.3E-09 4.6E-14 113.1 9.0 81 566-646 32-113 (193)
140 1dce_A Protein (RAB geranylger 98.9 9E-10 3.1E-14 134.6 8.1 104 548-655 448-552 (567)
141 1w8a_A SLIT protein; signaling 98.9 1E-09 3.6E-14 114.0 6.9 99 566-664 30-131 (192)
142 2wfh_A SLIT homolog 2 protein 98.9 2.5E-09 8.4E-14 111.1 8.3 104 536-646 31-137 (193)
143 1a9n_A U2A', U2A'; complex (nu 98.9 2.1E-09 7.1E-14 110.2 7.4 127 510-647 18-152 (176)
144 2xot_A Amphoterin-induced prot 98.9 1.3E-09 4.6E-14 126.2 6.0 122 537-664 40-168 (361)
145 1ds9_A Outer arm dynein; leuci 98.8 1.8E-10 6E-15 120.8 -3.7 111 531-650 43-155 (198)
146 1sxj_B Activator 1 37 kDa subu 98.8 3.3E-08 1.1E-12 112.9 15.1 186 181-394 21-211 (323)
147 1hqc_A RUVB; extended AAA-ATPa 98.8 1.3E-08 4.6E-13 116.1 11.6 255 181-469 12-324 (324)
148 1ds9_A Outer arm dynein; leuci 98.7 2.7E-10 9.2E-15 119.4 -4.9 103 558-664 41-145 (198)
149 2o6r_A Variable lymphocyte rec 98.7 1E-08 3.4E-13 105.2 7.0 81 566-646 29-111 (177)
150 2o6r_A Variable lymphocyte rec 98.7 3.5E-08 1.2E-12 101.1 9.4 94 567-664 9-105 (177)
151 2r9u_A Variable lymphocyte rec 98.7 2.3E-08 7.8E-13 101.7 7.8 81 565-646 33-116 (174)
152 3g39_A Variable lymphocyte rec 98.7 2.3E-08 7.7E-13 101.4 7.7 93 568-664 12-107 (170)
153 3sb4_A Hypothetical leucine ri 98.6 1.3E-07 4.5E-12 107.9 13.5 82 941-1037 48-137 (329)
154 4fdw_A Leucine rich hypothetic 98.6 1.5E-06 5.3E-11 101.0 22.3 204 1138-1377 181-396 (401)
155 2r9u_A Variable lymphocyte rec 98.6 2.3E-08 7.8E-13 101.7 5.8 94 568-665 15-111 (174)
156 1iqp_A RFCS; clamp loader, ext 98.6 2.2E-07 7.4E-12 106.3 14.1 185 181-395 25-214 (327)
157 3te6_A Regulatory protein SIR3 98.6 4E-07 1.4E-11 100.2 14.3 170 182-359 21-211 (318)
158 3sb4_A Hypothetical leucine ri 98.6 3.9E-07 1.3E-11 104.0 14.6 103 940-1056 224-327 (329)
159 3g39_A Variable lymphocyte rec 98.5 7.2E-08 2.5E-12 97.6 6.8 82 565-647 30-114 (170)
160 1jr3_A DNA polymerase III subu 98.4 2.5E-06 8.4E-11 99.5 16.4 195 181-393 16-221 (373)
161 2chq_A Replication factor C sm 98.4 3.2E-06 1.1E-10 96.0 16.1 182 181-393 17-204 (319)
162 2ifg_A High affinity nerve gro 98.3 2.8E-07 9.6E-12 106.3 5.9 61 561-621 27-90 (347)
163 4fdw_A Leucine rich hypothetic 98.3 2E-05 6.8E-10 91.6 19.7 101 965-1081 132-234 (401)
164 1jbk_A CLPB protein; beta barr 98.2 1.4E-06 4.8E-11 90.7 7.6 45 181-233 22-66 (195)
165 2ifg_A High affinity nerve gro 98.2 1.1E-06 3.6E-11 101.4 6.8 94 569-664 12-108 (347)
166 3bos_A Putative DNA replicatio 98.2 2.4E-06 8.2E-11 92.6 8.8 172 182-392 29-216 (242)
167 1sxj_D Activator 1 41 kDa subu 98.2 1.4E-05 4.8E-10 92.2 14.9 194 181-392 37-234 (353)
168 4fs7_A Uncharacterized protein 98.1 7.5E-05 2.6E-09 87.3 19.7 59 1268-1333 315-375 (394)
169 3pvs_A Replication-associated 98.1 3.5E-05 1.2E-09 90.2 16.6 178 181-391 26-213 (447)
170 3un9_A NLR family member X1; l 98.1 1.8E-06 6E-11 99.5 5.3 82 565-646 101-194 (372)
171 4fs7_A Uncharacterized protein 98.1 5.5E-05 1.9E-09 88.4 18.2 84 938-1034 293-376 (394)
172 2z4s_A Chromosomal replication 98.1 2.2E-05 7.4E-10 92.4 13.7 159 210-389 130-302 (440)
173 1sxj_E Activator 1 40 kDa subu 98.0 2.4E-05 8.2E-10 90.2 12.5 197 181-393 14-237 (354)
174 1sxj_A Activator 1 95 kDa subu 98.0 2.9E-05 9.9E-10 93.7 13.4 199 181-393 39-253 (516)
175 3h4m_A Proteasome-activating n 98.0 6.8E-05 2.3E-09 83.3 15.3 186 180-390 16-228 (285)
176 3pfi_A Holliday junction ATP-d 97.9 2.9E-05 9.8E-10 88.8 11.8 176 181-391 29-225 (338)
177 1a5t_A Delta prime, HOLB; zinc 97.9 0.00014 4.8E-09 82.3 16.7 171 187-392 8-204 (334)
178 3uk6_A RUVB-like 2; hexameric 97.9 6.6E-05 2.2E-09 87.0 13.8 193 181-390 44-300 (368)
179 3u61_B DNA polymerase accessor 97.9 0.00011 3.6E-09 83.4 14.4 173 181-388 26-211 (324)
180 1d2n_A N-ethylmaleimide-sensit 97.9 0.00016 5.5E-09 79.4 15.5 195 182-410 34-259 (272)
181 3syl_A Protein CBBX; photosynt 97.8 7.7E-05 2.6E-09 84.0 12.9 160 182-359 32-217 (309)
182 2qz4_A Paraplegin; AAA+, SPG7, 97.8 0.00016 5.5E-09 79.1 14.9 189 181-392 6-221 (262)
183 3un9_A NLR family member X1; l 97.8 9.9E-06 3.4E-10 93.2 4.7 83 564-646 154-250 (372)
184 3n70_A Transport activator; si 97.8 5E-05 1.7E-09 74.1 8.2 113 182-328 2-115 (145)
185 1l8q_A Chromosomal replication 97.7 0.00048 1.6E-08 77.9 16.7 154 210-387 37-202 (324)
186 2p65_A Hypothetical protein PF 97.7 2.4E-05 8.2E-10 80.6 5.3 45 181-233 22-66 (187)
187 3ec2_A DNA replication protein 97.7 5.1E-05 1.7E-09 77.5 7.6 102 210-328 38-142 (180)
188 1sxj_C Activator 1 40 kDa subu 97.7 0.00025 8.7E-09 80.7 13.6 182 181-390 25-209 (340)
189 3e4g_A ATP synthase subunit S, 97.6 4.5E-05 1.5E-09 75.4 5.6 87 1001-1087 62-153 (176)
190 3eie_A Vacuolar protein sortin 97.6 0.00072 2.5E-08 76.1 16.0 188 181-393 18-228 (322)
191 3rw6_A Nuclear RNA export fact 97.6 3.3E-05 1.1E-09 82.9 4.5 79 562-641 167-257 (267)
192 2qp9_X Vacuolar protein sortin 97.6 0.00042 1.4E-08 79.0 14.1 186 181-392 51-260 (355)
193 1xwi_A SKD1 protein; VPS4B, AA 97.6 0.0014 4.8E-08 73.4 18.0 188 181-393 12-223 (322)
194 4gt6_A Cell surface protein; l 97.6 0.0026 9E-08 74.1 21.1 79 944-1033 66-146 (394)
195 3e4g_A ATP synthase subunit S, 97.6 5.2E-05 1.8E-09 75.0 5.1 89 942-1039 61-154 (176)
196 1io0_A Tropomodulin; LRR prote 97.5 9.8E-05 3.4E-09 75.4 6.5 110 532-646 32-162 (185)
197 3d8b_A Fidgetin-like protein 1 97.5 0.00066 2.3E-08 77.5 14.1 188 181-393 84-295 (357)
198 3b9p_A CG5977-PA, isoform A; A 97.5 0.0018 6E-08 72.2 16.9 185 181-392 21-232 (297)
199 3cf0_A Transitional endoplasmi 97.5 0.0016 5.6E-08 72.3 16.5 182 181-387 15-222 (301)
200 2w58_A DNAI, primosome compone 97.5 0.00014 4.8E-09 75.8 7.3 118 189-328 37-158 (202)
201 3co5_A Putative two-component 97.5 6.4E-05 2.2E-09 73.1 4.0 110 182-328 5-115 (143)
202 3pxg_A Negative regulator of g 97.4 0.00042 1.4E-08 82.2 11.7 147 181-359 180-338 (468)
203 2zan_A Vacuolar protein sortin 97.4 0.0028 9.6E-08 74.5 18.4 189 181-392 134-344 (444)
204 2gno_A DNA polymerase III, gam 97.4 0.00052 1.8E-08 75.8 11.2 147 186-359 2-152 (305)
205 2ra8_A Uncharacterized protein 97.4 6.8E-05 2.3E-09 85.3 3.5 14 712-725 251-264 (362)
206 2ra8_A Uncharacterized protein 97.3 0.00012 4.1E-09 83.3 5.0 58 584-643 168-227 (362)
207 3vfd_A Spastin; ATPase, microt 97.3 0.0023 8E-08 74.1 15.7 189 181-393 115-326 (389)
208 1qvr_A CLPB protein; coiled co 97.3 0.0003 1E-08 90.6 8.3 45 181-233 170-214 (854)
209 3rw6_A Nuclear RNA export fact 97.3 5.8E-05 2E-09 81.0 1.1 95 570-666 148-258 (267)
210 4h09_A Hypothetical leucine ri 97.2 0.029 1E-06 64.7 23.9 80 939-1033 43-122 (379)
211 4fcw_A Chaperone protein CLPB; 97.2 0.0012 4E-08 74.3 11.4 138 182-328 18-169 (311)
212 1r6b_X CLPA protein; AAA+, N-t 97.2 0.0025 8.5E-08 81.3 15.7 157 181-359 186-362 (758)
213 4gt6_A Cell surface protein; l 97.2 0.0069 2.3E-07 70.5 18.1 110 933-1058 78-190 (394)
214 4b4t_J 26S protease regulatory 97.2 0.0043 1.5E-07 70.0 15.4 181 181-386 148-354 (405)
215 2kjq_A DNAA-related protein; s 97.2 0.0002 6.7E-09 69.8 4.0 24 211-234 37-60 (149)
216 2bjv_A PSP operon transcriptio 97.2 0.00059 2E-08 74.5 7.9 47 181-233 6-52 (265)
217 3hu3_A Transitional endoplasmi 97.1 0.002 6.8E-08 76.2 12.7 187 181-392 204-414 (489)
218 3pxi_A Negative regulator of g 97.1 0.0012 4E-08 84.1 11.3 148 181-359 180-338 (758)
219 4b4t_K 26S protease regulatory 97.1 0.0026 9E-08 72.9 13.0 53 181-233 172-229 (428)
220 1ojl_A Transcriptional regulat 97.1 0.00067 2.3E-08 75.3 7.3 47 181-233 2-48 (304)
221 1ofh_A ATP-dependent HSL prote 97.0 0.002 6.8E-08 72.3 10.6 53 181-233 15-73 (310)
222 4b4t_L 26S protease subunit RP 97.0 0.0069 2.4E-07 69.6 14.9 180 181-386 181-387 (437)
223 4h09_A Hypothetical leucine ri 97.0 0.046 1.6E-06 63.0 22.1 82 963-1058 40-121 (379)
224 1in4_A RUVB, holliday junction 96.9 0.0035 1.2E-07 70.8 11.8 175 181-390 25-220 (334)
225 4b4t_H 26S protease regulatory 96.9 0.01 3.6E-07 67.7 15.2 181 181-386 209-415 (467)
226 1io0_A Tropomodulin; LRR prote 96.9 0.00086 2.9E-08 68.4 5.4 92 556-647 27-135 (185)
227 1lv7_A FTSH; alpha/beta domain 96.9 0.014 4.8E-07 63.1 15.4 184 181-389 12-221 (257)
228 3pxi_A Negative regulator of g 96.8 0.0017 5.9E-08 82.5 8.9 157 181-358 491-674 (758)
229 2r62_A Cell division protease 96.8 0.00074 2.5E-08 73.9 4.2 50 181-233 11-67 (268)
230 2c9o_A RUVB-like 1; hexameric 96.7 0.0047 1.6E-07 73.1 11.0 94 291-392 297-409 (456)
231 2ce7_A Cell division protein F 96.7 0.0088 3E-07 69.9 12.6 178 181-386 16-221 (476)
232 4b4t_I 26S protease regulatory 96.7 0.0071 2.4E-07 68.4 11.2 179 181-385 182-387 (437)
233 4b4t_M 26S protease regulatory 96.6 0.0032 1.1E-07 72.2 8.1 179 181-385 181-386 (434)
234 3t15_A Ribulose bisphosphate c 96.5 0.0078 2.7E-07 66.3 10.5 26 208-233 34-59 (293)
235 3m6a_A ATP-dependent protease 96.5 0.012 4.2E-07 70.8 12.7 162 181-359 81-266 (543)
236 2r44_A Uncharacterized protein 96.5 0.0049 1.7E-07 69.8 8.5 149 181-359 27-198 (331)
237 2vhj_A Ntpase P4, P4; non- hyd 96.4 0.0014 4.7E-08 71.1 3.6 68 210-299 123-192 (331)
238 3cf2_A TER ATPase, transitiona 96.4 0.017 5.8E-07 71.7 13.7 181 181-386 204-407 (806)
239 2qgz_A Helicase loader, putati 96.3 0.0023 7.9E-08 71.0 4.7 42 187-233 134-175 (308)
240 3nbx_X ATPase RAVA; AAA+ ATPas 96.1 0.022 7.4E-07 67.2 11.9 42 182-233 23-64 (500)
241 2cvh_A DNA repair and recombin 96.1 0.022 7.4E-07 59.9 10.5 85 209-299 19-115 (220)
242 1r6b_X CLPA protein; AAA+, N-t 95.9 0.0088 3E-07 76.2 7.9 53 181-233 458-511 (758)
243 1qvr_A CLPB protein; coiled co 95.8 0.013 4.5E-07 75.3 8.9 137 182-328 559-710 (854)
244 2dhr_A FTSH; AAA+ protein, hex 95.6 0.13 4.5E-06 60.5 15.4 177 181-386 31-236 (499)
245 1um8_A ATP-dependent CLP prote 95.5 0.063 2.2E-06 61.7 12.4 23 211-233 73-95 (376)
246 2x8a_A Nuclear valosin-contain 95.5 0.054 1.9E-06 58.7 11.1 126 213-359 47-191 (274)
247 1ypw_A Transitional endoplasmi 95.5 0.043 1.5E-06 69.4 11.6 159 181-359 204-385 (806)
248 3hr8_A Protein RECA; alpha and 95.3 0.031 1.1E-06 62.5 8.3 84 209-299 60-149 (356)
249 2b8t_A Thymidine kinase; deoxy 95.3 0.01 3.5E-07 61.5 3.9 112 210-329 12-126 (223)
250 1v5w_A DMC1, meiotic recombina 95.2 0.072 2.5E-06 60.0 11.2 58 208-266 120-181 (343)
251 1n0w_A DNA repair protein RAD5 95.2 0.035 1.2E-06 59.3 8.0 88 210-298 24-128 (243)
252 1iy2_A ATP-dependent metallopr 95.0 0.076 2.6E-06 58.0 10.1 178 181-386 40-245 (278)
253 3io5_A Recombination and repai 94.9 0.063 2.1E-06 57.9 8.9 83 212-299 30-121 (333)
254 1rz3_A Hypothetical protein rb 94.9 0.024 8.3E-07 58.4 5.7 44 185-233 2-45 (201)
255 1g5t_A COB(I)alamin adenosyltr 94.9 0.014 4.8E-07 58.4 3.6 134 211-346 29-180 (196)
256 1xp8_A RECA protein, recombina 94.9 0.05 1.7E-06 61.3 8.5 82 210-298 74-161 (366)
257 2zr9_A Protein RECA, recombina 94.9 0.048 1.6E-06 61.3 8.3 84 209-299 60-149 (349)
258 1jr3_D DNA polymerase III, del 94.8 0.17 5.8E-06 57.2 12.8 157 210-392 18-184 (343)
259 2px0_A Flagellar biosynthesis 94.7 0.058 2E-06 59.0 8.3 87 209-298 104-191 (296)
260 2i1q_A DNA repair and recombin 94.5 0.055 1.9E-06 60.6 7.7 57 209-266 97-167 (322)
261 3ice_A Transcription terminati 94.5 0.04 1.4E-06 61.0 6.2 53 192-252 163-216 (422)
262 2w0m_A SSO2452; RECA, SSPF, un 94.5 0.049 1.7E-06 57.8 7.0 114 211-329 24-168 (235)
263 1u94_A RECA protein, recombina 94.1 0.082 2.8E-06 59.4 7.7 83 209-298 62-150 (356)
264 2z43_A DNA repair and recombin 94.0 0.082 2.8E-06 59.1 7.6 56 210-266 107-166 (324)
265 3rfe_A Platelet glycoprotein I 93.9 0.052 1.8E-06 51.0 4.8 53 568-622 11-66 (130)
266 2pze_A Cystic fibrosis transme 93.7 0.42 1.4E-05 50.0 12.0 23 211-233 35-57 (229)
267 3c8u_A Fructokinase; YP_612366 93.6 0.048 1.6E-06 56.6 4.5 39 189-233 7-45 (208)
268 3tqc_A Pantothenate kinase; bi 93.6 0.15 5.1E-06 56.1 8.6 46 184-233 70-115 (321)
269 1sky_E F1-ATPase, F1-ATP synth 93.4 0.13 4.5E-06 59.1 7.9 87 211-298 152-254 (473)
270 2ga8_A Hypothetical 39.9 kDa p 93.1 0.087 3E-06 58.2 5.6 46 184-233 2-47 (359)
271 1vma_A Cell division protein F 93.1 0.4 1.4E-05 52.5 10.9 26 208-233 102-127 (306)
272 1zp6_A Hypothetical protein AT 93.0 0.052 1.8E-06 55.4 3.7 25 209-233 8-32 (191)
273 1qhx_A CPT, protein (chloramph 93.0 0.043 1.5E-06 55.2 2.9 23 211-233 4-26 (178)
274 1gvn_B Zeta; postsegregational 93.0 0.087 3E-06 57.5 5.5 42 189-233 15-56 (287)
275 3dm5_A SRP54, signal recogniti 93.0 0.54 1.9E-05 53.9 12.2 25 209-233 99-123 (443)
276 3lda_A DNA repair protein RAD5 92.9 0.21 7.1E-06 57.0 8.7 57 209-266 177-237 (400)
277 3lw7_A Adenylate kinase relate 92.9 0.048 1.6E-06 54.8 3.1 20 211-230 2-21 (179)
278 3vaa_A Shikimate kinase, SK; s 92.8 0.05 1.7E-06 56.0 3.0 23 211-233 26-48 (199)
279 2ck3_D ATP synthase subunit be 92.7 0.28 9.6E-06 56.2 9.3 65 192-264 142-207 (482)
280 3kb2_A SPBC2 prophage-derived 92.7 0.049 1.7E-06 54.4 2.9 23 211-233 2-24 (173)
281 3l0o_A Transcription terminati 92.7 0.31 1.1E-05 53.9 9.1 54 191-252 163-217 (427)
282 1pgv_A TMD-1, tropomodulin TMD 92.6 0.17 5.8E-06 50.9 6.6 89 558-646 63-168 (197)
283 1kgd_A CASK, peripheral plasma 92.6 0.056 1.9E-06 54.4 3.0 23 211-233 6-28 (180)
284 1pzn_A RAD51, DNA repair and r 92.5 0.22 7.6E-06 55.9 8.2 49 208-256 129-181 (349)
285 2ffh_A Protein (FFH); SRP54, s 92.5 0.57 2E-05 53.6 11.6 25 209-233 97-121 (425)
286 2p5t_B PEZT; postsegregational 92.5 0.084 2.9E-06 56.6 4.5 43 188-233 13-55 (253)
287 1ly1_A Polynucleotide kinase; 92.5 0.063 2.2E-06 54.1 3.3 22 211-232 3-24 (181)
288 1odf_A YGR205W, hypothetical 3 92.4 0.12 4.1E-06 56.3 5.7 26 208-233 29-54 (290)
289 3uie_A Adenylyl-sulfate kinase 92.4 0.073 2.5E-06 54.7 3.8 25 209-233 24-48 (200)
290 3cf2_A TER ATPase, transitiona 92.4 0.42 1.4E-05 59.4 10.9 160 180-359 476-661 (806)
291 3hws_A ATP-dependent CLP prote 92.3 0.092 3.2E-06 59.9 4.9 52 182-233 16-74 (363)
292 2xxa_A Signal recognition part 92.2 0.55 1.9E-05 54.2 11.1 45 189-233 78-123 (433)
293 1fx0_B ATP synthase beta chain 92.2 0.27 9.2E-06 56.6 8.2 65 192-264 154-219 (498)
294 3trf_A Shikimate kinase, SK; a 92.1 0.065 2.2E-06 54.3 2.9 23 211-233 6-28 (185)
295 1kag_A SKI, shikimate kinase I 92.0 0.06 2E-06 53.9 2.5 23 211-233 5-27 (173)
296 1ex7_A Guanylate kinase; subst 92.0 0.061 2.1E-06 54.0 2.4 23 211-233 2-24 (186)
297 1knq_A Gluconate kinase; ALFA/ 91.9 0.1 3.5E-06 52.3 4.0 24 210-233 8-31 (175)
298 3bh0_A DNAB-like replicative h 91.9 0.59 2E-05 51.7 10.6 51 210-264 68-118 (315)
299 1uj2_A Uridine-cytidine kinase 91.8 0.085 2.9E-06 56.6 3.5 26 208-233 20-45 (252)
300 4gp7_A Metallophosphoesterase; 91.8 0.082 2.8E-06 52.7 3.1 23 210-232 9-31 (171)
301 4eun_A Thermoresistant glucoki 91.8 0.082 2.8E-06 54.3 3.2 24 210-233 29-52 (200)
302 2rhm_A Putative kinase; P-loop 91.7 0.09 3.1E-06 53.6 3.5 25 209-233 4-28 (193)
303 2bdt_A BH3686; alpha-beta prot 91.7 0.092 3.1E-06 53.4 3.5 22 211-232 3-24 (189)
304 3tau_A Guanylate kinase, GMP k 91.7 0.088 3E-06 54.5 3.3 25 209-233 7-31 (208)
305 1ye8_A Protein THEP1, hypothet 91.5 0.095 3.2E-06 52.4 3.2 22 212-233 2-23 (178)
306 2qt1_A Nicotinamide riboside k 91.5 0.1 3.6E-06 53.9 3.7 26 208-233 19-44 (207)
307 1nks_A Adenylate kinase; therm 91.5 0.089 3E-06 53.7 3.2 23 211-233 2-24 (194)
308 1xjc_A MOBB protein homolog; s 91.5 0.091 3.1E-06 51.6 2.9 25 209-233 3-27 (169)
309 3kl4_A SRP54, signal recogniti 91.4 0.69 2.4E-05 53.0 10.7 25 209-233 96-120 (433)
310 1y63_A LMAJ004144AAA protein; 91.4 0.1 3.5E-06 52.7 3.4 25 209-233 9-33 (184)
311 3iij_A Coilin-interacting nucl 91.4 0.077 2.6E-06 53.5 2.5 24 210-233 11-34 (180)
312 2ze6_A Isopentenyl transferase 91.4 0.095 3.2E-06 56.1 3.3 23 211-233 2-24 (253)
313 3tr0_A Guanylate kinase, GMP k 91.4 0.097 3.3E-06 54.1 3.3 23 211-233 8-30 (205)
314 3asz_A Uridine kinase; cytidin 91.4 0.1 3.5E-06 54.2 3.5 25 209-233 5-29 (211)
315 2qor_A Guanylate kinase; phosp 91.4 0.082 2.8E-06 54.5 2.8 26 208-233 10-35 (204)
316 3t61_A Gluconokinase; PSI-biol 91.3 0.078 2.7E-06 54.6 2.5 24 210-233 18-41 (202)
317 3a00_A Guanylate kinase, GMP k 91.3 0.078 2.7E-06 53.7 2.4 23 211-233 2-24 (186)
318 1zuh_A Shikimate kinase; alpha 91.3 0.091 3.1E-06 52.2 2.9 25 209-233 6-30 (168)
319 1uf9_A TT1252 protein; P-loop, 91.3 0.11 3.6E-06 53.7 3.5 26 208-233 6-31 (203)
320 2orw_A Thymidine kinase; TMTK, 91.3 0.03 1E-06 56.6 -0.8 108 211-329 4-113 (184)
321 4a1f_A DNAB helicase, replicat 91.3 0.37 1.3E-05 53.4 7.9 52 210-265 46-97 (338)
322 1tue_A Replication protein E1; 91.3 0.13 4.4E-06 51.7 3.8 24 210-233 58-81 (212)
323 2yvu_A Probable adenylyl-sulfa 91.2 0.12 4.3E-06 52.2 3.9 25 209-233 12-36 (186)
324 1j8m_F SRP54, signal recogniti 91.2 0.8 2.7E-05 49.9 10.5 24 210-233 98-121 (297)
325 1ukz_A Uridylate kinase; trans 91.2 0.12 4.2E-06 53.2 3.9 26 208-233 13-38 (203)
326 2hf9_A Probable hydrogenase ni 91.1 0.17 5.7E-06 53.2 4.9 26 208-233 36-61 (226)
327 1ixz_A ATP-dependent metallopr 91.1 0.14 4.7E-06 55.0 4.3 156 181-359 16-199 (254)
328 1kht_A Adenylate kinase; phosp 91.1 0.1 3.5E-06 53.2 3.1 23 211-233 4-26 (192)
329 1htw_A HI0065; nucleotide-bind 91.1 0.13 4.6E-06 50.1 3.7 24 210-233 33-56 (158)
330 3aez_A Pantothenate kinase; tr 91.1 0.13 4.4E-06 56.8 4.0 26 208-233 88-113 (312)
331 3fwy_A Light-independent proto 91.1 0.12 4E-06 57.1 3.7 26 208-233 46-71 (314)
332 1via_A Shikimate kinase; struc 91.0 0.085 2.9E-06 52.9 2.3 22 212-233 6-27 (175)
333 2jaq_A Deoxyguanosine kinase; 91.0 0.1 3.6E-06 53.8 3.1 22 212-233 2-23 (205)
334 1jjv_A Dephospho-COA kinase; P 91.0 0.12 4.1E-06 53.4 3.5 22 211-232 3-24 (206)
335 3ney_A 55 kDa erythrocyte memb 90.9 0.12 3.9E-06 52.3 3.2 25 209-233 18-42 (197)
336 2if2_A Dephospho-COA kinase; a 90.9 0.1 3.5E-06 53.8 3.0 22 211-232 2-23 (204)
337 1lvg_A Guanylate kinase, GMP k 90.9 0.091 3.1E-06 53.8 2.5 23 211-233 5-27 (198)
338 2j41_A Guanylate kinase; GMP, 90.9 0.12 4E-06 53.5 3.4 24 210-233 6-29 (207)
339 1tev_A UMP-CMP kinase; ploop, 90.8 0.12 4.2E-06 52.8 3.3 23 211-233 4-26 (196)
340 3a4m_A L-seryl-tRNA(SEC) kinas 90.8 0.12 4.2E-06 55.5 3.5 24 210-233 4-27 (260)
341 3umf_A Adenylate kinase; rossm 90.7 0.13 4.6E-06 52.9 3.5 26 208-233 27-52 (217)
342 2c95_A Adenylate kinase 1; tra 90.6 0.12 4E-06 53.0 3.0 24 210-233 9-32 (196)
343 1cke_A CK, MSSA, protein (cyti 90.6 0.12 4.1E-06 54.4 3.1 23 211-233 6-28 (227)
344 2bbw_A Adenylate kinase 4, AK4 90.5 0.13 4.3E-06 55.0 3.2 23 210-232 27-49 (246)
345 2iyv_A Shikimate kinase, SK; t 90.5 0.094 3.2E-06 53.0 2.1 23 211-233 3-25 (184)
346 2wsm_A Hydrogenase expression/ 90.4 0.16 5.5E-06 53.1 4.0 41 185-233 13-53 (221)
347 3cm0_A Adenylate kinase; ATP-b 90.4 0.14 4.9E-06 51.7 3.4 23 211-233 5-27 (186)
348 1rj9_A FTSY, signal recognitio 90.4 0.14 4.8E-06 56.2 3.4 25 209-233 101-125 (304)
349 1znw_A Guanylate kinase, GMP k 90.3 0.14 4.7E-06 53.0 3.2 24 210-233 20-43 (207)
350 2j37_W Signal recognition part 90.3 1.2 4.2E-05 52.2 11.6 26 208-233 99-124 (504)
351 1qf9_A UMP/CMP kinase, protein 90.2 0.17 5.7E-06 51.6 3.8 25 209-233 5-29 (194)
352 1ls1_A Signal recognition part 90.2 0.58 2E-05 51.1 8.3 23 211-233 99-121 (295)
353 2jeo_A Uridine-cytidine kinase 90.2 0.16 5.6E-06 54.0 3.8 25 209-233 24-48 (245)
354 1pgv_A TMD-1, tropomodulin TMD 90.2 0.34 1.2E-05 48.7 5.8 86 560-645 36-136 (197)
355 2grj_A Dephospho-COA kinase; T 90.2 0.15 5.3E-06 51.5 3.3 26 208-233 10-35 (192)
356 1g8p_A Magnesium-chelatase 38 90.2 0.12 3.9E-06 58.9 2.7 45 181-233 24-68 (350)
357 2cdn_A Adenylate kinase; phosp 90.1 0.15 5.3E-06 52.3 3.4 25 209-233 19-43 (201)
358 1e6c_A Shikimate kinase; phosp 90.1 0.11 3.9E-06 51.8 2.3 23 211-233 3-25 (173)
359 2plr_A DTMP kinase, probable t 90.1 0.16 5.4E-06 52.8 3.5 23 211-233 5-27 (213)
360 1z6g_A Guanylate kinase; struc 90.1 0.12 4.3E-06 53.7 2.7 23 211-233 24-46 (218)
361 2bwj_A Adenylate kinase 5; pho 90.0 0.13 4.6E-06 52.7 2.8 23 211-233 13-35 (199)
362 2pt5_A Shikimate kinase, SK; a 89.9 0.15 5.2E-06 50.5 3.1 22 212-233 2-23 (168)
363 3mfy_A V-type ATP synthase alp 89.9 0.51 1.7E-05 54.8 7.5 58 192-260 216-274 (588)
364 3upu_A ATP-dependent DNA helic 89.9 0.3 1E-05 57.6 6.0 22 212-233 47-68 (459)
365 3tlx_A Adenylate kinase 2; str 89.8 0.24 8.2E-06 52.5 4.7 25 209-233 28-52 (243)
366 4e22_A Cytidylate kinase; P-lo 89.7 0.16 5.5E-06 54.3 3.2 23 211-233 28-50 (252)
367 1s96_A Guanylate kinase, GMP k 89.7 0.16 5.6E-06 52.6 3.2 25 209-233 15-39 (219)
368 2f6r_A COA synthase, bifunctio 89.7 0.19 6.6E-06 54.6 3.9 25 208-232 73-97 (281)
369 2qe7_A ATP synthase subunit al 89.6 0.69 2.4E-05 53.3 8.4 94 192-298 151-263 (502)
370 1sq5_A Pantothenate kinase; P- 89.6 0.35 1.2E-05 53.4 5.9 26 208-233 78-103 (308)
371 2vli_A Antibiotic resistance p 89.5 0.11 3.9E-06 52.3 1.8 24 210-233 5-28 (183)
372 2f1r_A Molybdopterin-guanine d 89.5 0.12 4E-06 51.2 1.7 23 211-233 3-25 (171)
373 3vr4_A V-type sodium ATPase ca 89.4 0.64 2.2E-05 54.2 8.0 58 192-260 221-279 (600)
374 2pbr_A DTMP kinase, thymidylat 89.4 0.17 5.9E-06 51.6 3.1 22 212-233 2-23 (195)
375 1aky_A Adenylate kinase; ATP:A 89.4 0.17 5.8E-06 52.9 3.1 23 211-233 5-27 (220)
376 3b9q_A Chloroplast SRP recepto 89.3 0.21 7.3E-06 54.7 3.9 25 209-233 99-123 (302)
377 3rfe_A Platelet glycoprotein I 89.3 0.34 1.2E-05 45.3 4.7 53 591-646 11-66 (130)
378 3llm_A ATP-dependent RNA helic 89.2 0.95 3.2E-05 47.6 8.8 89 211-300 77-187 (235)
379 3p32_A Probable GTPase RV1496/ 89.2 0.35 1.2E-05 54.7 5.7 38 190-233 65-102 (355)
380 2i3b_A HCR-ntpase, human cance 89.1 0.17 5.7E-06 51.1 2.6 22 212-233 3-24 (189)
381 2r6a_A DNAB helicase, replicat 89.1 0.69 2.4E-05 54.3 8.4 50 210-262 203-252 (454)
382 1zu4_A FTSY; GTPase, signal re 89.0 0.47 1.6E-05 52.4 6.4 26 208-233 103-128 (320)
383 2wwf_A Thymidilate kinase, put 89.0 0.19 6.5E-06 52.1 3.1 24 210-233 10-33 (212)
384 1nn5_A Similar to deoxythymidy 89.0 0.19 6.5E-06 52.3 3.1 24 210-233 9-32 (215)
385 1m7g_A Adenylylsulfate kinase; 88.9 0.22 7.6E-06 51.5 3.6 24 210-233 25-48 (211)
386 2pez_A Bifunctional 3'-phospho 88.9 0.23 7.7E-06 49.9 3.5 24 210-233 5-28 (179)
387 2r9v_A ATP synthase subunit al 88.9 0.56 1.9E-05 54.0 7.0 94 192-298 164-276 (515)
388 2onk_A Molybdate/tungstate ABC 88.9 0.2 6.9E-06 52.8 3.1 25 208-233 23-47 (240)
389 1zd8_A GTP:AMP phosphotransfer 88.8 0.18 6.2E-06 53.0 2.8 24 210-233 7-30 (227)
390 3nwj_A ATSK2; P loop, shikimat 88.8 0.16 5.4E-06 53.8 2.3 23 211-233 49-71 (250)
391 3d3q_A TRNA delta(2)-isopenten 88.8 0.21 7.2E-06 55.0 3.3 23 211-233 8-30 (340)
392 3e70_C DPA, signal recognition 88.8 0.25 8.6E-06 54.7 4.0 26 208-233 127-152 (328)
393 1np6_A Molybdopterin-guanine d 88.7 0.21 7.3E-06 49.5 3.0 25 209-233 5-29 (174)
394 1vht_A Dephospho-COA kinase; s 88.6 0.24 8.3E-06 51.6 3.6 23 210-232 4-26 (218)
395 2ck3_A ATP synthase subunit al 88.6 0.94 3.2E-05 52.3 8.5 98 192-298 151-271 (510)
396 4a74_A DNA repair and recombin 88.5 0.23 7.8E-06 52.3 3.4 45 209-253 24-72 (231)
397 3a8t_A Adenylate isopentenyltr 88.5 0.27 9.3E-06 53.9 4.0 24 210-233 40-63 (339)
398 2z0h_A DTMP kinase, thymidylat 88.5 0.22 7.5E-06 50.9 3.1 22 212-233 2-23 (197)
399 3tif_A Uncharacterized ABC tra 88.4 0.22 7.5E-06 52.4 3.1 23 211-233 32-54 (235)
400 2v54_A DTMP kinase, thymidylat 88.4 0.22 7.5E-06 51.2 3.1 23 211-233 5-27 (204)
401 1gtv_A TMK, thymidylate kinase 88.4 0.12 4.1E-06 53.8 1.0 22 212-233 2-23 (214)
402 1q57_A DNA primase/helicase; d 88.3 1 3.5E-05 53.7 9.3 54 209-265 241-294 (503)
403 1zak_A Adenylate kinase; ATP:A 88.3 0.19 6.4E-06 52.6 2.5 24 210-233 5-28 (222)
404 2pcj_A ABC transporter, lipopr 88.3 0.22 7.4E-06 52.0 2.9 23 211-233 31-53 (224)
405 2ehv_A Hypothetical protein PH 88.3 0.23 7.8E-06 53.1 3.2 23 210-232 30-52 (251)
406 3fb4_A Adenylate kinase; psych 88.3 0.23 7.8E-06 51.7 3.1 22 212-233 2-23 (216)
407 3r20_A Cytidylate kinase; stru 88.1 0.24 8.3E-06 51.5 3.1 24 210-233 9-32 (233)
408 3exa_A TRNA delta(2)-isopenten 88.0 0.28 9.5E-06 53.0 3.6 23 211-233 4-26 (322)
409 3dl0_A Adenylate kinase; phosp 88.0 0.24 8.3E-06 51.5 3.1 22 212-233 2-23 (216)
410 3lnc_A Guanylate kinase, GMP k 88.0 0.17 5.8E-06 53.4 1.9 23 211-233 28-51 (231)
411 2og2_A Putative signal recogni 88.0 0.29 9.9E-06 54.8 3.9 26 208-233 155-180 (359)
412 2yhs_A FTSY, cell division pro 87.9 0.56 1.9E-05 54.3 6.2 43 208-253 291-333 (503)
413 2cbz_A Multidrug resistance-as 87.8 0.26 8.9E-06 51.9 3.2 23 211-233 32-54 (237)
414 3b85_A Phosphate starvation-in 87.8 0.2 6.8E-06 51.5 2.2 23 211-233 23-45 (208)
415 3gfo_A Cobalt import ATP-bindi 87.8 0.25 8.5E-06 53.2 3.1 22 211-232 35-56 (275)
416 3vr4_D V-type sodium ATPase su 87.7 0.5 1.7E-05 53.8 5.5 86 211-298 152-257 (465)
417 1g41_A Heat shock protein HSLU 87.7 0.31 1.1E-05 56.0 3.9 53 181-233 15-73 (444)
418 3cmu_A Protein RECA, recombina 87.6 0.67 2.3E-05 63.1 7.5 84 209-299 1426-1515(2050)
419 3ake_A Cytidylate kinase; CMP 87.5 0.27 9.2E-06 50.7 3.1 22 212-233 4-25 (208)
420 1b0u_A Histidine permease; ABC 87.5 0.27 9.3E-06 52.6 3.2 24 210-233 32-55 (262)
421 3crm_A TRNA delta(2)-isopenten 87.5 0.31 1.1E-05 53.4 3.6 24 210-233 5-28 (323)
422 2wji_A Ferrous iron transport 87.5 0.35 1.2E-05 47.6 3.8 23 211-233 4-26 (165)
423 1sgw_A Putative ABC transporte 87.5 0.23 8E-06 51.1 2.5 23 211-233 36-58 (214)
424 1ji0_A ABC transporter; ATP bi 87.4 0.28 9.4E-06 51.9 3.1 23 211-233 33-55 (240)
425 1mv5_A LMRA, multidrug resista 87.3 0.33 1.1E-05 51.4 3.6 24 210-233 28-51 (243)
426 2olj_A Amino acid ABC transpor 87.3 0.29 9.8E-06 52.4 3.2 23 211-233 51-73 (263)
427 1yrb_A ATP(GTP)binding protein 87.3 0.32 1.1E-05 52.4 3.7 26 208-233 12-37 (262)
428 3foz_A TRNA delta(2)-isopenten 87.3 0.35 1.2E-05 52.2 3.8 25 209-233 9-33 (316)
429 4g1u_C Hemin import ATP-bindin 87.2 0.28 9.6E-06 52.6 3.0 23 211-233 38-60 (266)
430 2d2e_A SUFC protein; ABC-ATPas 87.2 0.3 1E-05 52.0 3.3 22 211-232 30-51 (250)
431 1g6h_A High-affinity branched- 87.2 0.29 9.8E-06 52.4 3.1 23 211-233 34-56 (257)
432 3k1j_A LON protease, ATP-depen 87.1 0.36 1.2E-05 59.1 4.3 43 181-233 41-83 (604)
433 1oix_A RAS-related protein RAB 87.1 0.3 1E-05 49.6 3.1 24 210-233 29-52 (191)
434 3end_A Light-independent proto 87.0 0.33 1.1E-05 53.7 3.7 26 208-233 39-64 (307)
435 2ff7_A Alpha-hemolysin translo 87.0 0.3 1E-05 51.8 3.1 23 211-233 36-58 (247)
436 2zej_A Dardarin, leucine-rich 87.0 0.29 9.9E-06 49.3 2.9 22 212-233 4-25 (184)
437 2zu0_C Probable ATP-dependent 87.0 0.31 1.1E-05 52.3 3.2 23 211-233 47-69 (267)
438 1vpl_A ABC transporter, ATP-bi 86.8 0.32 1.1E-05 51.8 3.2 23 211-233 42-64 (256)
439 3vkw_A Replicase large subunit 86.8 1.3 4.4E-05 50.6 8.3 107 208-330 159-271 (446)
440 2dyk_A GTP-binding protein; GT 86.8 0.36 1.2E-05 47.1 3.5 23 211-233 2-24 (161)
441 2ged_A SR-beta, signal recogni 86.8 0.38 1.3E-05 48.9 3.7 25 209-233 47-71 (193)
442 3be4_A Adenylate kinase; malar 86.7 0.31 1E-05 50.7 3.0 23 211-233 6-28 (217)
443 3sr0_A Adenylate kinase; phosp 86.7 0.33 1.1E-05 49.7 3.1 22 212-233 2-23 (206)
444 2xb4_A Adenylate kinase; ATP-b 86.7 0.32 1.1E-05 50.9 3.1 22 212-233 2-23 (223)
445 3oaa_A ATP synthase subunit al 86.7 2.3 7.9E-05 48.8 10.2 94 192-298 151-263 (513)
446 2qi9_C Vitamin B12 import ATP- 86.7 0.32 1.1E-05 51.5 3.1 23 211-233 27-49 (249)
447 2ghi_A Transport protein; mult 86.6 0.33 1.1E-05 51.9 3.2 23 211-233 47-69 (260)
448 1e4v_A Adenylate kinase; trans 86.6 0.32 1.1E-05 50.5 3.0 22 212-233 2-23 (214)
449 2ixe_A Antigen peptide transpo 86.5 0.34 1.2E-05 52.2 3.2 24 210-233 45-68 (271)
450 1ak2_A Adenylate kinase isoenz 86.5 0.34 1.2E-05 51.0 3.2 23 211-233 17-39 (233)
451 1svm_A Large T antigen; AAA+ f 86.4 0.58 2E-05 52.8 5.2 25 209-233 168-192 (377)
452 2v9p_A Replication protein E1; 86.4 0.34 1.2E-05 52.8 3.1 24 210-233 126-149 (305)
453 2nq2_C Hypothetical ABC transp 86.3 0.34 1.2E-05 51.6 3.0 23 211-233 32-54 (253)
454 1a7j_A Phosphoribulokinase; tr 86.3 0.19 6.4E-06 54.9 1.0 25 209-233 4-28 (290)
455 2c61_A A-type ATP synthase non 86.3 0.56 1.9E-05 53.8 5.0 88 211-298 153-258 (469)
456 2ihy_A ABC transporter, ATP-bi 86.2 0.34 1.2E-05 52.3 3.1 23 211-233 48-70 (279)
457 2qmh_A HPR kinase/phosphorylas 86.2 0.39 1.3E-05 47.9 3.2 23 211-233 35-57 (205)
458 2yz2_A Putative ABC transporte 86.1 0.36 1.2E-05 51.8 3.2 23 211-233 34-56 (266)
459 3e1s_A Exodeoxyribonuclease V, 86.1 0.57 1.9E-05 56.5 5.2 105 211-328 205-315 (574)
460 2f9l_A RAB11B, member RAS onco 86.1 0.38 1.3E-05 49.2 3.2 24 210-233 5-28 (199)
461 2eyu_A Twitching motility prot 86.0 0.44 1.5E-05 51.0 3.7 108 210-333 25-137 (261)
462 2wjg_A FEOB, ferrous iron tran 85.9 0.47 1.6E-05 47.9 3.8 24 210-233 7-30 (188)
463 2vp4_A Deoxynucleoside kinase; 85.9 0.37 1.3E-05 50.6 3.1 26 208-233 18-43 (230)
464 1fx0_A ATP synthase alpha chai 85.8 0.74 2.5E-05 53.1 5.7 82 211-298 164-264 (507)
465 2lkc_A Translation initiation 85.8 0.53 1.8E-05 46.9 4.1 26 208-233 6-31 (178)
466 2q6t_A DNAB replication FORK h 85.7 1.7 5.8E-05 50.8 8.9 53 210-265 200-252 (444)
467 3zvl_A Bifunctional polynucleo 85.6 0.4 1.4E-05 55.5 3.4 26 208-233 256-281 (416)
468 1u0j_A DNA replication protein 85.6 0.69 2.4E-05 48.9 4.9 37 191-233 91-127 (267)
469 1ltq_A Polynucleotide kinase; 85.5 0.4 1.4E-05 52.9 3.3 22 211-232 3-24 (301)
470 3gqb_B V-type ATP synthase bet 85.5 0.72 2.5E-05 52.5 5.2 88 211-298 148-260 (464)
471 2ce2_X GTPase HRAS; signaling 85.4 0.39 1.3E-05 47.1 2.9 22 212-233 5-26 (166)
472 3sop_A Neuronal-specific septi 85.4 0.4 1.4E-05 51.6 3.1 22 212-233 4-25 (270)
473 2xau_A PRE-mRNA-splicing facto 85.3 3.1 0.00011 52.2 11.5 90 211-300 110-219 (773)
474 3hjn_A DTMP kinase, thymidylat 85.2 0.91 3.1E-05 46.1 5.5 22 212-233 2-23 (197)
475 2v3c_C SRP54, signal recogniti 85.2 0.52 1.8E-05 54.4 4.1 25 209-233 98-122 (432)
476 4eaq_A DTMP kinase, thymidylat 85.2 0.53 1.8E-05 49.2 3.9 25 209-233 25-49 (229)
477 3bgw_A DNAB-like replicative h 85.2 2.1 7.3E-05 49.6 9.3 51 210-264 197-247 (444)
478 1q3t_A Cytidylate kinase; nucl 85.1 0.44 1.5E-05 50.3 3.2 26 208-233 14-39 (236)
479 3nh6_A ATP-binding cassette SU 85.0 0.38 1.3E-05 52.6 2.7 23 210-232 80-102 (306)
480 2nzj_A GTP-binding protein REM 85.0 0.46 1.6E-05 47.2 3.2 24 210-233 4-27 (175)
481 1nlf_A Regulatory protein REPA 85.0 0.42 1.5E-05 52.0 3.1 23 211-233 31-53 (279)
482 3con_A GTPase NRAS; structural 85.0 0.43 1.5E-05 48.3 3.0 23 211-233 22-44 (190)
483 2pjz_A Hypothetical protein ST 84.9 0.44 1.5E-05 50.9 3.1 23 211-233 31-53 (263)
484 1cr0_A DNA primase/helicase; R 84.7 0.44 1.5E-05 52.4 3.1 24 210-233 35-58 (296)
485 2gj8_A MNME, tRNA modification 84.6 0.48 1.6E-05 47.1 3.1 23 211-233 5-27 (172)
486 1z2a_A RAS-related protein RAB 84.5 0.57 2E-05 46.0 3.6 24 210-233 5-28 (168)
487 2dr3_A UPF0273 protein PH0284; 84.5 0.55 1.9E-05 49.9 3.7 39 210-250 23-61 (247)
488 1fzq_A ADP-ribosylation factor 84.4 0.57 1.9E-05 46.9 3.6 25 209-233 15-39 (181)
489 3cmu_A Protein RECA, recombina 84.4 1.2 4E-05 60.8 7.4 85 209-300 382-472 (2050)
490 1svi_A GTP-binding protein YSX 84.3 0.57 1.9E-05 47.6 3.6 25 209-233 22-46 (195)
491 2ocp_A DGK, deoxyguanosine kin 84.1 0.53 1.8E-05 49.8 3.4 23 211-233 3-25 (241)
492 2bbs_A Cystic fibrosis transme 84.0 0.5 1.7E-05 51.3 3.1 24 210-233 64-87 (290)
493 1u8z_A RAS-related protein RAL 84.0 0.51 1.8E-05 46.3 3.0 23 211-233 5-27 (168)
494 1cp2_A CP2, nitrogenase iron p 83.9 0.54 1.8E-05 50.8 3.3 23 211-233 2-24 (269)
495 4akg_A Glutathione S-transfera 83.9 2.6 8.8E-05 59.8 10.7 139 211-359 1268-1431(2695)
496 2erx_A GTP-binding protein DI- 83.8 0.55 1.9E-05 46.4 3.2 23 211-233 4-26 (172)
497 3q72_A GTP-binding protein RAD 83.8 0.49 1.7E-05 46.5 2.7 22 212-233 4-25 (166)
498 1nrj_B SR-beta, signal recogni 83.8 0.57 1.9E-05 48.7 3.4 26 208-233 10-35 (218)
499 3eph_A TRNA isopentenyltransfe 83.7 0.52 1.8E-05 53.0 3.1 23 211-233 3-25 (409)
500 1m7b_A RND3/RHOE small GTP-bin 83.7 0.51 1.7E-05 47.4 2.9 25 209-233 6-30 (184)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1e-45 Score=476.70 Aligned_cols=649 Identities=19% Similarity=0.107 Sum_probs=389.7
Q ss_pred eeeEEEeCCccccc----cccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcch--hhcccCCCCe
Q 045318 566 CLRVLCLREYNICK----ISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCA--DMGNLIKLRH 639 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~----lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~ 639 (1388)
+++.|+|+++.+.. +|.+++++++|++++++.+.+..+|..++++++|++|||++|.....+|. .++++++|++
T Consensus 51 ~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~ 130 (768)
T 3rgz_A 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKF 130 (768)
T ss_dssp EEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCE
T ss_pred cEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCE
Confidence 45555555555442 45555555555555555555555555555566666666655554444554 5555666666
Q ss_pred eecCCCCCcccCcCCC-CCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhh--hhcCCCCCCC
Q 045318 640 LNNYNVPLLEGMPLRI-GHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARD--AELNGKRNLD 716 (1388)
Q Consensus 640 L~l~~~~~~~~~p~~i-~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~--~~l~~~~~L~ 716 (1388)
|++++|.+...+|..+ +++++|++|.. ..+...+.... ..+.++++|+
T Consensus 131 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L-----------------------------s~n~l~~~~~~~~~~~~~l~~L~ 181 (768)
T 3rgz_A 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDL-----------------------------SANSISGANVVGWVLSDGCGELK 181 (768)
T ss_dssp EECCSSEEECCSSCCSCCCCTTCSEEEC-----------------------------CSSCCEEETHHHHHHTTCCTTCC
T ss_pred EECcCCccCCcCCHHHhccCCCCCEEEC-----------------------------CCCccCCcCChhhhhhccCCCCC
Confidence 6665555433334332 44444444410 00000000000 1144555666
Q ss_pred eEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCC
Q 045318 717 VLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPA 795 (1388)
Q Consensus 717 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~ 795 (1388)
.|++++|.+.+..+ ...+++|+.|+++++.....+..+. .+++|++|++++|.+...+| .++.+++
T Consensus 182 ~L~Ls~n~l~~~~~-----------~~~l~~L~~L~Ls~n~l~~~~~~l~--~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 248 (768)
T 3rgz_A 182 HLAISGNKISGDVD-----------VSRCVNLEFLDVSSNNFSTGIPFLG--DCSALQHLDISGNKLSGDFSRAISTCTE 248 (768)
T ss_dssp EEECCSSEEESCCB-----------CTTCTTCCEEECCSSCCCSCCCBCT--TCCSCCEEECCSSCCCSCHHHHTTTCSS
T ss_pred EEECCCCcccccCC-----------cccCCcCCEEECcCCcCCCCCcccc--cCCCCCEEECcCCcCCCcccHHHhcCCC
Confidence 66666554432110 1223334444443333322222222 24555555555555444333 3455555
Q ss_pred cceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCC
Q 045318 796 LKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLP 875 (1388)
Q Consensus 796 L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~ 875 (1388)
|++|++++|.....+ ....+++|++|++++ +.+++.+|..+.
T Consensus 249 L~~L~Ls~n~l~~~~-------------------------------------~~~~l~~L~~L~L~~-n~l~~~ip~~~~ 290 (768)
T 3rgz_A 249 LKLLNISSNQFVGPI-------------------------------------PPLPLKSLQYLSLAE-NKFTGEIPDFLS 290 (768)
T ss_dssp CCEEECCSSCCEESC-------------------------------------CCCCCTTCCEEECCS-SEEEESCCCCSC
T ss_pred CCEEECCCCcccCcc-------------------------------------CccccCCCCEEECcC-CccCCccCHHHH
Confidence 555555555322110 011367788888887 466656665431
Q ss_pred CccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeee
Q 045318 876 SLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVT 955 (1388)
Q Consensus 876 ~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~ 955 (1388)
. .+++|+.|+++++..... ....+..+++|++|++++|.+.
T Consensus 291 ~-----------------~~~~L~~L~Ls~n~l~~~----------------------~p~~~~~l~~L~~L~L~~n~l~ 331 (768)
T 3rgz_A 291 G-----------------ACDTLTGLDLSGNHFYGA----------------------VPPFFGSCSLLESLALSSNNFS 331 (768)
T ss_dssp T-----------------TCTTCSEEECCSSEEEEC----------------------CCGGGGGCTTCCEEECCSSEEE
T ss_pred h-----------------hcCcCCEEECcCCcCCCc----------------------cchHHhcCCCccEEECCCCccc
Confidence 1 123344444444332110 0112256788999999999887
Q ss_pred -eecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccC--CCccceEEEc
Q 045318 956 -YLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLS--LSSLRQLKIS 1032 (1388)
Q Consensus 956 -~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~--l~~L~~L~l~ 1032 (1388)
.++. ..+..+++|+.|++++|.....++... ....++|+.|++++|...+.+|..+.. +++|++|+++
T Consensus 332 ~~ip~---~~l~~l~~L~~L~Ls~n~l~~~~p~~l------~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 332 GELPM---DTLLKMRGLKVLDLSFNEFSGELPESL------TNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCH---HHHTTCTTCCEEECCSSEEEECCCTTH------HHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred CcCCH---HHHhcCCCCCEEeCcCCccCccccHHH------HhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 4432 337788999999999876544555432 111237999999999888888877766 7889999999
Q ss_pred cCCCCccChhhhccCCCCCccceeeccCCCcccccc-ccCCCCccEEEeecCcCcccchhhhhhccCCCCCCCCCCCCcc
Q 045318 1033 ECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIAR-VQLPPSLKLLHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSY 1111 (1388)
Q Consensus 1033 ~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~ 1111 (1388)
+|.....+|..+. .+++|+.|++++|.....+|. ....++|+.|++++|. + .+.+|..+..+
T Consensus 403 ~n~l~~~~p~~l~--~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~-l--------------~~~~p~~~~~l 465 (768)
T 3rgz_A 403 NNGFTGKIPPTLS--NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-L--------------EGEIPQELMYV 465 (768)
T ss_dssp SSEEEEECCGGGG--GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSC-C--------------CSCCCGGGGGC
T ss_pred CCccccccCHHHh--cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCc-c--------------cCcCCHHHcCC
Confidence 9988778888774 488899999988754334432 2445788888888774 2 23566666666
Q ss_pred ccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceec
Q 045318 1112 TCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETIT 1191 (1388)
Q Consensus 1112 ~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~ 1191 (1388)
++ |+.|++++|.-...++......++|+.|++++|.....+|.....+++|++|++++|.-...+|..
T Consensus 466 ~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~----------- 533 (768)
T 3rgz_A 466 KT-LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE----------- 533 (768)
T ss_dssp TT-CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGG-----------
T ss_pred CC-ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHH-----------
Confidence 66 999999986544455544455566999999887766677766667788999999998655455543
Q ss_pred cchhhhhhhccccceEeecCCCCccccCCcCCc-CccceEEecc---------CCC------------------------
Q 045318 1192 FGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQ-FSIEILLIQD---------CPS------------------------ 1237 (1388)
Q Consensus 1192 l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~---------c~~------------------------ 1237 (1388)
+..+++|+.|++++|+-...+|..+.. ..+..+.+.. ...
T Consensus 534 ------l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 607 (768)
T 3rgz_A 534 ------LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRL 607 (768)
T ss_dssp ------GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGG
T ss_pred ------HcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcc
Confidence 346789999999998766677765433 2222221111 000
Q ss_pred --C-----------cccCC-CCCCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcccccccCCCcc
Q 045318 1238 --L-----------GSFTA-DCFPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASL 1303 (1388)
Q Consensus 1238 --l-----------~~~~~-~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL 1303 (1388)
. ...|. .+-.++|+.|++++|.+.+.++. .++++++|+.|+|++| ...+.+|... ..+++|
T Consensus 608 ~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N-~l~g~ip~~l---~~L~~L 682 (768)
T 3rgz_A 608 STRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHN-DISGSIPDEV---GDLRGL 682 (768)
T ss_dssp GGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSS-CCCSCCCGGG---GGCTTC
T ss_pred ccccccccccceecccCchhhhccccccEEECcCCcccccCCH-HHhccccCCEEeCcCC-ccCCCCChHH---hCCCCC
Confidence 0 00010 01236799999999999877775 5889999999999994 4556777765 678999
Q ss_pred ceeecccCCCCCCcc-CCCCCCCcCcEeecCCCCCccCCCCCCCCccceeeeccCcchH----HHhcccCCCCCCccccc
Q 045318 1304 TFLWIDNFPNLLRLS-SIENLTSLQFLRFRNCPKLEYFPENGLPTSLLRLQIIACPLMK----ERCKKEKGHYWPLIADL 1378 (1388)
Q Consensus 1304 ~~L~l~~~~~l~~l~-~~~~l~~L~~L~l~~c~~l~~l~~~~l~~sL~~L~i~~c~~L~----~~~~~~~~~~~~~~~~~ 1378 (1388)
+.|++++|...+.+| .+.++++|++|++++|+--..+|..+...++....+.+||.|- ..|....+++|++|+|+
T Consensus 683 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~ 762 (768)
T 3rgz_A 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRS 762 (768)
T ss_dssp CEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC----------
T ss_pred CEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCCCCc
Confidence 999999999777888 8999999999999996544578887777788888888887532 27999999999999999
Q ss_pred cceE
Q 045318 1379 PSVE 1382 (1388)
Q Consensus 1379 ~~~~ 1382 (1388)
|++.
T Consensus 763 ~~~~ 766 (768)
T 3rgz_A 763 HHHH 766 (768)
T ss_dssp ----
T ss_pred cccC
Confidence 9864
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=5e-42 Score=442.42 Aligned_cols=663 Identities=17% Similarity=0.073 Sum_probs=420.7
Q ss_pred ccccccchH---HHHhhccCceeeEEEeCCccccccccccccCcccceeeccCcccc-cccc--chhcccccceeecCCC
Q 045318 548 FSRHFLSDS---VVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIE-TLPE--SVNTLYNLHTLLLESC 621 (1388)
Q Consensus 548 ~~~~~l~~~---~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~--~i~~L~~L~~L~L~~~ 621 (1388)
++...+.+. ++..+..+++|++++++.+.+..+|..++.+++|++|+|++|.+. .+|. .++++++|++|++++|
T Consensus 57 L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n 136 (768)
T 3rgz_A 57 LSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSN 136 (768)
T ss_dssp CTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSS
T ss_pred CCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCC
Confidence 444444444 677888999999999999999888899999999999999999987 5777 8999999999999999
Q ss_pred cchhhcchhh-cccCCCCeeecCCCCCcccCcCC---CCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccC
Q 045318 622 SRLKKLCADM-GNLIKLRHLNNYNVPLLEGMPLR---IGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLEN 697 (1388)
Q Consensus 622 ~~~~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~ 697 (1388)
......|..+ .++++|++|++++|.+....|.. ++++++|++|..... .+..
T Consensus 137 ~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n------------------------~l~~ 192 (768)
T 3rgz_A 137 TLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN------------------------KISG 192 (768)
T ss_dssp EEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS------------------------EEES
T ss_pred ccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC------------------------cccc
Confidence 7776777665 89999999999999866555555 677777777722110 0100
Q ss_pred CCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC-CCCcccCCCCCCCccEE
Q 045318 698 VKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGA-NFPIWLGDSTFSNLELL 776 (1388)
Q Consensus 698 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L 776 (1388)
. ..+..+++|+.|++++|.+.+..+ .+..+++|++|+++++... .+|.++.. +++|++|
T Consensus 193 ~--------~~~~~l~~L~~L~Ls~n~l~~~~~----------~l~~l~~L~~L~Ls~n~l~~~~~~~l~~--l~~L~~L 252 (768)
T 3rgz_A 193 D--------VDVSRCVNLEFLDVSSNNFSTGIP----------FLGDCSALQHLDISGNKLSGDFSRAIST--CTELKLL 252 (768)
T ss_dssp C--------CBCTTCTTCCEEECCSSCCCSCCC----------BCTTCCSCCEEECCSSCCCSCHHHHTTT--CSSCCEE
T ss_pred c--------CCcccCCcCCEEECcCCcCCCCCc----------ccccCCCCCEEECcCCcCCCcccHHHhc--CCCCCEE
Confidence 0 112567788888888887765322 2566788888888888765 44666654 8899999
Q ss_pred eeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCccccccccc
Q 045318 777 RFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQ 856 (1388)
Q Consensus 777 ~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~ 856 (1388)
++++|.+...+|.. .+++|++|++++|.....++..+.. .+++|+.|.+.++.-... .+..++.+++|+
T Consensus 253 ~Ls~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~-----~~~~L~~L~Ls~n~l~~~-----~p~~~~~l~~L~ 321 (768)
T 3rgz_A 253 NISSNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSG-----ACDTLTGLDLSGNHFYGA-----VPPFFGSCSLLE 321 (768)
T ss_dssp ECCSSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCT-----TCTTCSEEECCSSEEEEC-----CCGGGGGCTTCC
T ss_pred ECCCCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHh-----hcCcCCEEECcCCcCCCc-----cchHHhcCCCcc
Confidence 99999887777755 7889999999988654444433322 135555555554431111 112344456666
Q ss_pred EEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchh
Q 045318 857 ELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGL 936 (1388)
Q Consensus 857 ~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~ 936 (1388)
+|++++ +.+.+.+|.. .+..+++|+.|+++++..... ++..
T Consensus 322 ~L~L~~-n~l~~~ip~~-----------------~l~~l~~L~~L~Ls~n~l~~~---------------------~p~~ 362 (768)
T 3rgz_A 322 SLALSS-NNFSGELPMD-----------------TLLKMRGLKVLDLSFNEFSGE---------------------LPES 362 (768)
T ss_dssp EEECCS-SEEEEECCHH-----------------HHTTCTTCCEEECCSSEEEEC---------------------CCTT
T ss_pred EEECCC-CcccCcCCHH-----------------HHhcCCCCCEEeCcCCccCcc---------------------ccHH
Confidence 666666 3444344421 022234444445444432110 0111
Q ss_pred hhccCC-CcceEEEeeeeeeeecccCCccccC--CCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCc
Q 045318 937 LNQELP-ILEELAICNTKVTYLWQTGSGLLQD--ISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSL 1013 (1388)
Q Consensus 937 ~~~~l~-~L~~L~l~~~~l~~l~~~~~~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 1013 (1388)
+..++ +|++|++++|.++..... .+.. +++|+.|++++|.....++.. +..+++|++|++++|...
T Consensus 363 -l~~l~~~L~~L~Ls~N~l~~~~~~---~~~~~~~~~L~~L~L~~n~l~~~~p~~-------l~~l~~L~~L~Ls~N~l~ 431 (768)
T 3rgz_A 363 -LTNLSASLLTLDLSSNNFSGPILP---NLCQNPKNTLQELYLQNNGFTGKIPPT-------LSNCSELVSLHLSFNYLS 431 (768)
T ss_dssp -HHHHTTTCSEEECCSSEEEEECCT---TTTCSTTCCCCEEECCSSEEEEECCGG-------GGGCTTCCEEECCSSEEE
T ss_pred -HHhhhcCCcEEEccCCCcCCCcCh---hhhhcccCCccEEECCCCccccccCHH-------HhcCCCCCEEECcCCccc
Confidence 12334 788888888887754322 2333 678888888887654444443 445778888888888877
Q ss_pred ccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCcccccc-ccCCCCccEEEeecCcCcccchhh
Q 045318 1014 VKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIAR-VQLPPSLKLLHIQSCHDLRTLIDE 1092 (1388)
Q Consensus 1014 ~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~sL~~L~l~~c~~L~~~~~~ 1092 (1388)
+.+|..+..+++|++|++++|...+.+|..+. .+++|+.|++++|.....+|. ...+++|+.|++++|.
T Consensus 432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~-------- 501 (768)
T 3rgz_A 432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM--YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNR-------- 501 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG--GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSC--------
T ss_pred CcccHHHhcCCCCCEEECCCCcccCcCCHHHc--CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCc--------
Confidence 78888888888888888888887777887774 377788888887765444443 2345677777777664
Q ss_pred hhhccCCCCCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCC
Q 045318 1093 DQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECS 1172 (1388)
Q Consensus 1093 ~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~ 1172 (1388)
+.+.+|..+..+++ |+.|++++|.-...++......++|+.|++++|+....+|........+..+.+....
T Consensus 502 -------l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~ 573 (768)
T 3rgz_A 502 -------LTGEIPKWIGRLEN-LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573 (768)
T ss_dssp -------CCSCCCGGGGGCTT-CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSC
T ss_pred -------cCCcCChHHhcCCC-CCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccc
Confidence 22356666666655 7777777764444554444444557777777766555565544443333333333222
Q ss_pred CccccccCCCC-CCC--cceeccch--hhhhhhccccceEeecCCCCccccCCcCCc-CccceEEeccCCCCcccCCC-C
Q 045318 1173 ELESIAEGLDN-DSS--VETITFGA--VQFLKFYLKLTMLDINGCEKLMALPNNLHQ-FSIEILLIQDCPSLGSFTAD-C 1245 (1388)
Q Consensus 1173 ~l~~~~~~~~~-~~~--l~~l~l~~--~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~-~~L~~L~l~~c~~l~~~~~~-~ 1245 (1388)
.+..+...... ... ...+.+.+ ...+..++.+..+++.....-..+|..+.. ++|+.|++++|.--..+|.. +
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~ 653 (768)
T 3rgz_A 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653 (768)
T ss_dssp EEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGG
T ss_pred cccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHh
Confidence 11111110000 000 00000000 011223444444444442222334444444 78888888888544455533 3
Q ss_pred CCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCccCCCCCCC
Q 045318 1246 FPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLSSIENLTS 1325 (1388)
Q Consensus 1246 ~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~~~~~l~~ 1325 (1388)
-.++|+.|++++|.+.+.++. .+.++++|+.|+|++| ...+.+|... ..+++|+.|++++|+..+.+|....+.+
T Consensus 654 ~l~~L~~L~Ls~N~l~g~ip~-~l~~L~~L~~LdLs~N-~l~g~ip~~l---~~l~~L~~L~ls~N~l~g~iP~~~~~~~ 728 (768)
T 3rgz_A 654 SMPYLFILNLGHNDISGSIPD-EVGDLRGLNILDLSSN-KLDGRIPQAM---SALTMLTEIDLSNNNLSGPIPEMGQFET 728 (768)
T ss_dssp GCTTCCEEECCSSCCCSCCCG-GGGGCTTCCEEECCSS-CCEECCCGGG---GGCCCCSEEECCSSEEEEECCSSSSGGG
T ss_pred ccccCCEEeCcCCccCCCCCh-HHhCCCCCCEEECCCC-cccCcCChHH---hCCCCCCEEECcCCcccccCCCchhhcc
Confidence 347788999999998877765 5788999999999984 4555677654 5778899999999987777885566666
Q ss_pred cCcEeecCCCCCc
Q 045318 1326 LQFLRFRNCPKLE 1338 (1388)
Q Consensus 1326 L~~L~l~~c~~l~ 1338 (1388)
+....+.+|+.+-
T Consensus 729 ~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 729 FPPAKFLNNPGLC 741 (768)
T ss_dssp SCGGGGCSCTEEE
T ss_pred CCHHHhcCCchhc
Confidence 7777777776654
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=1.8e-38 Score=389.58 Aligned_cols=293 Identities=16% Similarity=0.188 Sum_probs=225.2
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhc--CccccccCCceEEEEeCCcc--CHHHHHH
Q 045318 184 HGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYN--DHMVESHFDLKAWTCVSDDF--DAIKVTK 259 (1388)
Q Consensus 184 vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~--~~~~~~~F~~~~wv~~s~~~--~~~~~~~ 259 (1388)
|||++++++|.++|..... ...+||+|+||||+||||||++||+ +.+++.+|+.++||++++.+ ++..++.
T Consensus 131 ~GR~~~~~~l~~~L~~~~~-----~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCD-----LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTT-----SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccC-----CCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 5999999999999976421 4679999999999999999999998 67899999999999999985 8999999
Q ss_pred HHHHHhcCCCC-------CCCcHHHHHHHHHhhcCCc-eEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhH
Q 045318 260 AILRSICMHTD-------ADDDLNSLQVKLKDGLSRK-KFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSV 331 (1388)
Q Consensus 260 ~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 331 (1388)
.|+.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|.. .+||+||||||++.|
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~--------~~gs~ilvTTR~~~v 277 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQ--------ELRLRCLVTTRDVEI 277 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHH--------HTTCEEEEEESBGGG
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhhcccc--------cCCCEEEEEcCCHHH
Confidence 99999986522 1234566788999999996 9999999999863223432 279999999999999
Q ss_pred HhhcC-CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHHHHh
Q 045318 332 ASMMG-SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRNVLN 410 (1388)
Q Consensus 332 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~~~~ 410 (1388)
+..++ ...+|+|++|++++||+||.+++|+.. .++++++++++|+++|+|+||||+++|+.|+.+ .. .|...+.
T Consensus 278 ~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~w-~~~~~l~ 352 (549)
T 2a5y_B 278 SNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TF-EKMAQLN 352 (549)
T ss_dssp GGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SH-HHHHHHH
T ss_pred HHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHhccc-hH-HHHHHhH
Confidence 98876 336799999999999999999997653 246788999999999999999999999999876 32 3334444
Q ss_pred hhccC---------CCCCCCchhHhhHHH------------------------HHHHHHHc--CCcCCCCCcchHHHHHH
Q 045318 411 NKIWN---------LPEEGGDIMRALKND------------------------VVLVWMAE--GLLEPDTSEMKMEELGR 455 (1388)
Q Consensus 411 ~~~~~---------~~~~~~~~~~~l~~~------------------------li~~wia~--g~i~~~~~~~~~~~~~~ 455 (1388)
...+. +.-.++.+.+.++.- -+++|+|+ ||+.......+.+++++
T Consensus 353 ~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i~~~~~~~~~~~~~~ 432 (549)
T 2a5y_B 353 NKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVAD 432 (549)
T ss_dssp HHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC-------CCCTHHHHH
T ss_pred HHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeeccceeccCCCCCCHHHHHH
Confidence 33221 111112221111100 07899999 99976443567888888
Q ss_pred HHHHHHHhCCCCcccc--CCCcccccchHHHHHHHhccCceE
Q 045318 456 SYFRELHSRSFFQKSY--MDSRFIMHDLITDLAQWAASDSYF 495 (1388)
Q Consensus 456 ~~~~~L~~~~li~~~~--~~~~~~mHdli~d~a~~~~~~~~~ 495 (1388)
||++|++++|++... ...+|+|||+||++|++++.++++
T Consensus 433 -~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 433 -RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp -HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred -HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHHH
Confidence 999999999999873 345799999999999999887654
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.2e-33 Score=362.22 Aligned_cols=94 Identities=16% Similarity=0.151 Sum_probs=62.8
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
+++|++++.++.+|..+. .+|++|+|++|.+..+|. .++++++|++|++++|......|..++++++|++|++++|.
T Consensus 7 ~~~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 7 EVADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp SEEECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred CeeECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 467777777777776554 677788888777777754 57777778888887776555556677777788888777776
Q ss_pred CcccCcC-CCCCCCCCCCC
Q 045318 647 LLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 647 ~~~~~p~-~i~~L~~L~~L 664 (1388)
+..+|. .++.+++|++|
T Consensus 85 -l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 85 -LSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp -CCCCCTTTTTTCTTCSEE
T ss_pred -cCccChhhhccCCCCCEE
Confidence 333443 24444444433
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-33 Score=356.98 Aligned_cols=452 Identities=16% Similarity=0.096 Sum_probs=253.9
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCcccccccc-chhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 613 (1388)
+++++| +++.+.+....+..|.++++|++|+|++|.+..+ |..++++++|++|+|++|.+..+|. +|+++++|
T Consensus 25 ~~l~~L-----~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L 99 (680)
T 1ziw_A 25 TNITVL-----NLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNL 99 (680)
T ss_dssp TTCSEE-----ECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCcEE-----ECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCC
Confidence 456666 3455555544445566677777777777777655 3566777777777777777777765 46777777
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCccccc--ccccccceeE
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELK--FLENLQVKLK 691 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~--~L~~L~~~L~ 691 (1388)
++|++++|......|..|+++++|++|++++|.+....|..++++++|++|... .+...+.....+. .+++|+ .+
T Consensus 100 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~-~L- 176 (680)
T 1ziw_A 100 TELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLK-KL- 176 (680)
T ss_dssp SEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC-SSCCCCBCHHHHGGGTTCEES-EE-
T ss_pred CEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc-CCcccccCHHHhhcccccccc-EE-
Confidence 777777765433334567777777777777776544445556666666665221 1111111111111 112222 22
Q ss_pred eecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCCCCC
Q 045318 692 ISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANF-PIWLGDSTF 770 (1388)
Q Consensus 692 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-p~~~~~~~l 770 (1388)
.+..+... ...+..+..+.+|+.|++.++.+.. .........+ ...+|+.|+++++..... |.++..-..
T Consensus 177 --~L~~n~l~-~~~~~~~~~l~~L~~L~l~~~~l~~-----~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 247 (680)
T 1ziw_A 177 --ELSSNQIK-EFSPGCFHAIGRLFGLFLNNVQLGP-----SLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKW 247 (680)
T ss_dssp --ECTTCCCC-CBCTTGGGGSSEECEEECTTCCCHH-----HHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred --ECCCCccc-ccChhhhhhhhhhhhhhccccccCh-----hhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCc
Confidence 22222211 1223445666777777776554321 0000111111 347899999988876544 445543112
Q ss_pred CCccEEeeecCCCCCCCC-CCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccc----cCCC
Q 045318 771 SNLELLRFENCAMCTSLP-SIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWI----PHQP 845 (1388)
Q Consensus 771 ~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~----~~~~ 845 (1388)
++|++|++++|.+....| .++.+++|++|++++|......+..+.+ +++|+.|.+.+...-..+. +...
T Consensus 248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~~~~~~~~~~~~lp~i~ 321 (680)
T 1ziw_A 248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHG------LFNVRYLNLKRSFTKQSISLASLPKID 321 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTT------CTTCCEEECTTCBCCC------CCEEC
T ss_pred CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcC------CCCccEEeccchhhhcccccccccccC
Confidence 459999999998876655 6889999999999999766655544433 7788888876432110000 0001
Q ss_pred CCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCcccccccc
Q 045318 846 SQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSS 925 (1388)
Q Consensus 846 ~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~ 925 (1388)
...+..+++|++|++++ +.+.+..|..+. .+++|+.|+++++.... ..
T Consensus 322 ~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~------------------~l~~L~~L~Ls~n~~~~---------~~---- 369 (680)
T 1ziw_A 322 DFSFQWLKCLEHLNMED-NDIPGIKSNMFT------------------GLINLKYLSLSNSFTSL---------RT---- 369 (680)
T ss_dssp TTTTTTCTTCCEEECCS-CCBCCCCTTTTT------------------TCTTCCEEECTTCBSCC---------CE----
T ss_pred hhhcccCCCCCEEECCC-CccCCCChhHhc------------------cccCCcEEECCCCchhh---------hh----
Confidence 11345678888888888 466544443222 22334444444332100 00
Q ss_pred CCCCchhcchhhhc--cCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcce
Q 045318 926 NVPNQVFLTGLLNQ--ELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLH 1003 (1388)
Q Consensus 926 ~~~~~~~l~~~~~~--~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~ 1003 (1388)
++...+. ..++|+.|++++|+++.+.. ..+..+++|+.|+++++.....++... +..+++|+
T Consensus 370 -------l~~~~f~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~------~~~l~~L~ 433 (680)
T 1ziw_A 370 -------LTNETFVSLAHSPLHILNLTKNKISKIES---DAFSWLGHLEVLDLGLNEIGQELTGQE------WRGLENIF 433 (680)
T ss_dssp -------ECTTTTGGGTTSCCCEEECTTSCCCEECT---TTTTTCTTCCEEECCSSCCEEECCSGG------GTTCTTCC
T ss_pred -------cchhhhcccccCcCceEECCCCCCCeECh---hhhhCCCCCCEEeCCCCcCccccCccc------ccCccccc
Confidence 0000001 12567788888887777644 346677777777777765433343322 55577777
Q ss_pred EEEecCCCCcccccccccCCCccceEEEccCCCC--ccChhhhccCCCCCccceeeccC
Q 045318 1004 YLELRSCPSLVKLPQTLLSLSSLRQLKISECHSM--KSLPEALMHNDNAPLESLNVVDC 1060 (1388)
Q Consensus 1004 ~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l--~~~p~~~~~~~l~~L~~L~l~~c 1060 (1388)
+|++++|......+..+..+++|+.|++++|... ..+|..+ ..+++|+.|++++|
T Consensus 434 ~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L~Ls~N 490 (680)
T 1ziw_A 434 EIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTILDLSNN 490 (680)
T ss_dssp EEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEEECCSS
T ss_pred EEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEEECCCC
Confidence 7777777766666667777777777777777643 3444444 23555666655554
No 6
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.6e-31 Score=333.41 Aligned_cols=200 Identities=13% Similarity=0.004 Sum_probs=115.5
Q ss_pred CcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccC
Q 045318 943 ILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLS 1022 (1388)
Q Consensus 943 ~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~ 1022 (1388)
+|+.|++++|.++.++. ..+..+++|+.|+++++ .++.+|.. +..+++|++|++++|......|..+..
T Consensus 255 ~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n-~l~~lp~~-------l~~l~~L~~L~l~~n~l~~~~~~~~~~ 323 (606)
T 3t6q_A 255 SVESINLQKHYFFNISS---NTFHCFSGLQELDLTAT-HLSELPSG-------LVGLSTLKKLVLSANKFENLCQISASN 323 (606)
T ss_dssp EEEEEECTTCCCSSCCT---TTTTTCTTCSEEECTTS-CCSCCCSS-------CCSCTTCCEEECTTCCCSBGGGGCGGG
T ss_pred ceeEEEeecCccCccCH---HHhccccCCCEEeccCC-ccCCCChh-------hcccccCCEEECccCCcCcCchhhhhc
Confidence 67888888888777654 34777888888888875 45555543 455778888888888777777777888
Q ss_pred CCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCcccc--c-cccCCCCccEEEeecCcCcccchhhhhhccCC
Q 045318 1023 LSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYI--A-RVQLPPSLKLLHIQSCHDLRTLIDEDQISGMK 1099 (1388)
Q Consensus 1023 l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~--~-~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~ 1099 (1388)
+++|++|++++|.....+|.... ..+++|++|++++|...... + .....++|++|++++|. +..
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~----------- 390 (606)
T 3t6q_A 324 FPSLTHLSIKGNTKRLELGTGCL-ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLS----------- 390 (606)
T ss_dssp CTTCSEEECCSCSSCCBCCSSTT-TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEE-----------
T ss_pred cCcCCEEECCCCCcccccchhhh-hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCc-----------
Confidence 88888888888876656655422 34677788887776432221 1 12334566666666653 111
Q ss_pred CCCCCCCCCCccccccceeecCCCCCcccccC--CCCCCcccCceeEecCCCccccCCCCCCccccccEEeccC
Q 045318 1100 KDGDIPSGSSSYTCLLERLHIEDCPSLTSLFS--LKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYEC 1171 (1388)
Q Consensus 1100 ~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~--~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c 1171 (1388)
..|..+..+++ |+.|++++| .++...+ .....++|+.|++++|......+.....+++|++|++++|
T Consensus 391 ---~~~~~~~~l~~-L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 459 (606)
T 3t6q_A 391 ---LKTEAFKECPQ-LELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN 459 (606)
T ss_dssp ---ECTTTTTTCTT-CSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC
T ss_pred ---CCHHHhcCCcc-CCeEECCCC-cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC
Confidence 22333333333 666666653 2222211 1222233555555554332222222333455555555554
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=2.6e-31 Score=335.74 Aligned_cols=518 Identities=16% Similarity=0.116 Sum_probs=259.2
Q ss_pred cCCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccC
Q 045318 509 FSKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDL 587 (1388)
Q Consensus 509 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l 587 (1388)
++..++++.+..+....+. ...|.++++|++| +++.|.+....+..|..+++|++|+|++|.++.+ |..|+++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L-----~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l 103 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILK-SYSFSNFSELQWL-----DLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGL 103 (606)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE-----ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTC
T ss_pred CCCCcCEEECCCCCcCEeC-hhhccCCccCcEE-----eCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCc
Confidence 3456677766665544332 1346677777777 3555666555556667777777777777777766 5677777
Q ss_pred cccceeeccCccccccc-cchhcccccceeecCCCcchh-hcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCC-C
Q 045318 588 KHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLK-KLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQT-L 664 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~-L 664 (1388)
.+|++|+|++|.+..+| ..++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|+. +
T Consensus 104 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l 183 (606)
T 3vq2_A 104 TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVN 183 (606)
T ss_dssp TTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCC
T ss_pred ccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhcccccc
Confidence 77777777777777665 567777777777777765433 45777777777777777777744444555666665553 2
Q ss_pred CceEeccCCCCCc-ccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCC
Q 045318 665 PYFVVGKNTGSQL-RELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLR 743 (1388)
Q Consensus 665 ~~~~~~~~~~~~~-~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~ 743 (1388)
..+....+.-..+ ....... .+....+..+...+...+..+.++++++.+.+..+...............+..+.
T Consensus 184 ~~L~l~~n~l~~~~~~~~~~~----~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~ 259 (606)
T 3vq2_A 184 LSLDMSLNPIDFIQDQAFQGI----KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLC 259 (606)
T ss_dssp CEEECTTCCCCEECTTTTTTC----EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGG
T ss_pred ceeeccCCCcceeCcccccCc----eeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhh
Confidence 1222221110000 0000000 1222233333333344455555666666666655544321111000001111111
Q ss_pred CCCCcceEEEec-cCCCC-CCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCcc
Q 045318 744 PHENLKQLAIRG-YGGAN-FPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTV 821 (1388)
Q Consensus 744 ~~~~L~~L~l~~-~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 821 (1388)
.. .++.+.+.. +.... .|. +. .+++|+.|++++|.+. .+|.+..+++|+.|++++|.. +.++
T Consensus 260 ~l-~l~~l~l~~~~~~~~~~~~-~~--~l~~L~~L~l~~~~~~-~l~~l~~~~~L~~L~l~~n~l-~~lp---------- 323 (606)
T 3vq2_A 260 DV-TIDEFRLTYTNDFSDDIVK-FH--CLANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQL-KQFP---------- 323 (606)
T ss_dssp GS-EEEEEEECCCTTCCGGGGS-CG--GGTTCSEEEEESCCCC-CCCCCCTTCCCSEEEEESCCC-SSCC----------
T ss_pred hc-cHhheeccccccccccccc-cc--cCCCCCEEEecCccch-hhhhccccccCCEEEcccccC-cccc----------
Confidence 11 233333311 11111 111 11 2344444444444432 233444444444444444432 1111
Q ss_pred CCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEE
Q 045318 822 SFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKL 901 (1388)
Q Consensus 822 ~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L 901 (1388)
.. .+++|++|++++|..+. ...+..+++|+.|
T Consensus 324 --------------------------~~-~l~~L~~L~l~~n~~~~---------------------~~~~~~l~~L~~L 355 (606)
T 3vq2_A 324 --------------------------TL-DLPFLKSLTLTMNKGSI---------------------SFKKVALPSLSYL 355 (606)
T ss_dssp --------------------------CC-CCSSCCEEEEESCSSCE---------------------ECCCCCCTTCCEE
T ss_pred --------------------------cC-CCCccceeeccCCcCcc---------------------chhhccCCCCCEE
Confidence 00 13333333333321111 1122233444444
Q ss_pred EEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCc
Q 045318 902 EIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPE 981 (1388)
Q Consensus 902 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~ 981 (1388)
+++++....... ....+..+++|++|++++|.++.++ ..+..+++|+.|++++|..
T Consensus 356 ~ls~n~l~~~~~--------------------~~~~~~~~~~L~~L~L~~n~l~~~~----~~~~~l~~L~~L~l~~n~l 411 (606)
T 3vq2_A 356 DLSRNALSFSGC--------------------CSYSDLGTNSLRHLDLSFNGAIIMS----ANFMGLEELQHLDFQHSTL 411 (606)
T ss_dssp ECCSSCEEEEEE--------------------CCHHHHCCSCCCEEECCSCSEEEEC----CCCTTCTTCCEEECTTSEE
T ss_pred ECcCCccCCCcc--------------------hhhhhccCCcccEeECCCCccccch----hhccCCCCCCeeECCCCcc
Confidence 444443211000 0011244566666666666666654 2356666677777766543
Q ss_pred hhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCcc-ChhhhccCCCCCccceeeccC
Q 045318 982 LLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKS-LPEALMHNDNAPLESLNVVDC 1060 (1388)
Q Consensus 982 l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~-~p~~~~~~~l~~L~~L~l~~c 1060 (1388)
....+... +..+++|++|++++|......|..+..+++|++|++++|..... +|..+ ..+++|+.|++++|
T Consensus 412 ~~~~~~~~------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 412 KRVTEFSA------FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVF--ANTTNLTFLDLSKC 483 (606)
T ss_dssp ESTTTTTT------TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC--TTCTTCCEEECTTS
T ss_pred CCccChhh------hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhh--ccCCCCCEEECCCC
Confidence 33222111 44566677777777766666666666677777777777765442 44444 34666777777666
Q ss_pred CCcccccc-ccCCCCccEEEeecCcCcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCcccccCCC-CCCcc
Q 045318 1061 NSLTYIAR-VQLPPSLKLLHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLK-GLPAT 1138 (1388)
Q Consensus 1061 ~~l~~~~~-~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~-~~~~s 1138 (1388)
......+. ....++|+.|++++|. +.. ..|..+..+++ |+.|++++| .++.++... .++.+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~--------------~~~~~~~~l~~-L~~L~l~~N-~l~~~p~~~~~l~~~ 546 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNN-LLF--------------LDSSHYNQLYS-LSTLDCSFN-RIETSKGILQHFPKS 546 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSC-CSC--------------EEGGGTTTCTT-CCEEECTTS-CCCCEESCGGGSCTT
T ss_pred cCCccChhhhcccccCCEEECCCCc-CCC--------------cCHHHccCCCc-CCEEECCCC-cCcccCHhHhhhccc
Confidence 43222221 1334667777776663 221 22344444444 777777774 466665432 33445
Q ss_pred cCceeEecCCC
Q 045318 1139 LEDIKVKNCSK 1149 (1388)
Q Consensus 1139 L~~L~l~~c~~ 1149 (1388)
|+.|++++++-
T Consensus 547 L~~l~l~~N~~ 557 (606)
T 3vq2_A 547 LAFFNLTNNSV 557 (606)
T ss_dssp CCEEECCSCCC
T ss_pred CcEEEccCCCc
Confidence 77888877653
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.98 E-value=3.5e-31 Score=334.47 Aligned_cols=371 Identities=16% Similarity=0.073 Sum_probs=205.3
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.|++|+|++|.++.++ ..|.++++|++|+|++|.+..+ |.+|+++++|++|+|++|......|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 56777888888777766 3777788888888888877776 556777888888888877655545777778888888888
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|.+....|..++++++|++|... .+.......+..+.++++|+.|++++
T Consensus 112 ~~n~l~~~~~~~~~~l~~L~~L~L~-----------------------------~n~l~~~~lp~~~~~l~~L~~L~Ls~ 162 (606)
T 3vq2_A 112 VETKLASLESFPIGQLITLKKLNVA-----------------------------HNFIHSCKLPAYFSNLTNLVHVDLSY 162 (606)
T ss_dssp TTSCCCCSSSSCCTTCTTCCEEECC-----------------------------SSCCCCCCCCGGGGTCTTCCEEECCS
T ss_pred cCCccccccccccCCCCCCCEEeCC-----------------------------CCcccceechHhHhhcCCCCEEEccC
Confidence 8777433333567777777666211 11101101134566677788888887
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCC-CCC-CCCCCCCcceee
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCT-SLP-SIGQLPALKHLS 800 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~-~l~-~l~~l~~L~~L~ 800 (1388)
|.+.+..+........+. ..+..|+++++....+|..... ..+|+.|++++|.... ..| .++.+++|+.++
T Consensus 163 n~l~~~~~~~~~~l~~L~-----~~l~~L~l~~n~l~~~~~~~~~--~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~ 235 (606)
T 3vq2_A 163 NYIQTITVNDLQFLRENP-----QVNLSLDMSLNPIDFIQDQAFQ--GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHR 235 (606)
T ss_dssp SCCCEECTTTTHHHHHCT-----TCCCEEECTTCCCCEECTTTTT--TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEE
T ss_pred CcceecChhhhhhhhccc-----cccceeeccCCCcceeCccccc--CceeeeeeccCCccchhHHHHHhcccccccccc
Confidence 776653333222111111 1244677777766666655543 3478888888776542 222 456666666666
Q ss_pred ccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCC--CCCCcc
Q 045318 801 IIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPE--HLPSLK 878 (1388)
Q Consensus 801 L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~--~l~~L~ 878 (1388)
+...... + ...+..+.-... .....+ .++.+.+..++.+.+.+|. .+++|+
T Consensus 236 l~~~~~~--------~------~~~l~~~~~~~~------------~~l~~l-~l~~l~l~~~~~~~~~~~~~~~l~~L~ 288 (606)
T 3vq2_A 236 LILGEFK--------D------ERNLEIFEPSIM------------EGLCDV-TIDEFRLTYTNDFSDDIVKFHCLANVS 288 (606)
T ss_dssp EEEECCT--------T------SCCCSCCCGGGG------------TTGGGS-EEEEEEECCCTTCCGGGGSCGGGTTCS
T ss_pred ccccccc--------c------CCcccccChHHh------------hhhhhc-cHhheeccccccccccccccccCCCCC
Confidence 5432100 0 000000000000 011111 4556666555555544442 123333
Q ss_pred EEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeec
Q 045318 879 TLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLW 958 (1388)
Q Consensus 879 ~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~ 958 (1388)
.|.+.+ +.... ++ .+..+++|++|++++|.+..++
T Consensus 289 ~L~l~~---------------------~~~~~----------------------l~--~l~~~~~L~~L~l~~n~l~~lp 323 (606)
T 3vq2_A 289 AMSLAG---------------------VSIKY----------------------LE--DVPKHFKWQSLSIIRCQLKQFP 323 (606)
T ss_dssp EEEEES---------------------CCCCC----------------------CC--CCCTTCCCSEEEEESCCCSSCC
T ss_pred EEEecC---------------------ccchh----------------------hh--hccccccCCEEEcccccCcccc
Confidence 333333 22110 00 1134566777777777765554
Q ss_pred ccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccc--ccccccCCCccceEEEccCCC
Q 045318 959 QTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVK--LPQTLLSLSSLRQLKISECHS 1036 (1388)
Q Consensus 959 ~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~--~p~~~~~l~~L~~L~l~~~~~ 1036 (1388)
. + .+++|+.|+++++..+..++ +..+++|++|++++|..... .|..+..+++|++|++++|.
T Consensus 324 ~-----~-~l~~L~~L~l~~n~~~~~~~---------~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~- 387 (606)
T 3vq2_A 324 T-----L-DLPFLKSLTLTMNKGSISFK---------KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG- 387 (606)
T ss_dssp C-----C-CCSSCCEEEEESCSSCEECC---------CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-
T ss_pred c-----C-CCCccceeeccCCcCccchh---------hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-
Confidence 1 3 66777777777765444331 34466777777777765543 25566667777777777775
Q ss_pred CccChhhhccCCCCCccceeeccCC
Q 045318 1037 MKSLPEALMHNDNAPLESLNVVDCN 1061 (1388)
Q Consensus 1037 l~~~p~~~~~~~l~~L~~L~l~~c~ 1061 (1388)
+..+|..+ ..+++|+.|++++|.
T Consensus 388 l~~~~~~~--~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 388 AIIMSANF--MGLEELQHLDFQHST 410 (606)
T ss_dssp EEEECCCC--TTCTTCCEEECTTSE
T ss_pred cccchhhc--cCCCCCCeeECCCCc
Confidence 33344333 235556666665543
No 9
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=330.22 Aligned_cols=286 Identities=16% Similarity=0.139 Sum_probs=186.9
Q ss_pred CCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccccccc
Q 045318 942 PILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLL 1021 (1388)
Q Consensus 942 ~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~ 1021 (1388)
++|+.|++++|.+..+.. ..+..+++|+.|+++++. +..++... +..+++|++|++++|.+....|..+.
T Consensus 266 ~~L~~L~Ls~n~l~~~~~---~~~~~l~~L~~L~L~~n~-i~~~~~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~ 335 (844)
T 3j0a_A 266 SSVRHLDLSHGFVFSLNS---RVFETLKDLKVLNLAYNK-INKIADEA------FYGLDNLQVLNLSYNLLGELYSSNFY 335 (844)
T ss_dssp SCCCEEECTTCCCCEECS---CCSSSCCCCCEEEEESCC-CCEECTTT------TTTCSSCCEEEEESCCCSCCCSCSCS
T ss_pred CCccEEECCCCcccccCh---hhhhcCCCCCEEECCCCc-CCCCChHH------hcCCCCCCEEECCCCCCCccCHHHhc
Confidence 567777887777766643 346777788888887754 33332222 55677888888888877777777788
Q ss_pred CCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCcCcccchhhhhhccCCCC
Q 045318 1022 SLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCHDLRTLIDEDQISGMKKD 1101 (1388)
Q Consensus 1022 ~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~~ 1101 (1388)
.+++|++|++++|......+..+ ..+++|+.|++++|. ++.++ .+++|+.|+++++. +.
T Consensus 336 ~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~Ls~N~-l~~i~---~~~~L~~L~l~~N~-l~-------------- 394 (844)
T 3j0a_A 336 GLPKVAYIDLQKNHIAIIQDQTF--KFLEKLQTLDLRDNA-LTTIH---FIPSIPDIFLSGNK-LV-------------- 394 (844)
T ss_dssp SCTTCCEEECCSCCCCCCCSSCS--CSCCCCCEEEEETCC-SCCCS---SCCSCSEEEEESCC-CC--------------
T ss_pred CCCCCCEEECCCCCCCccChhhh--cCCCCCCEEECCCCC-CCccc---CCCCcchhccCCCC-cc--------------
Confidence 88888888888886433333334 447778888887764 34333 26778888888763 22
Q ss_pred CCCCCCCCccccccceeecCCCCCcccccCC--CCCCcccCceeEecCCCccccCCC--CCCccccccEEeccCCCcccc
Q 045318 1102 GDIPSGSSSYTCLLERLHIEDCPSLTSLFSL--KGLPATLEDIKVKNCSKLLFLSKR--GALPKVLKDLYIYECSELESI 1177 (1388)
Q Consensus 1102 ~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~sL~~L~l~~c~~l~~l~~~--~~~~~~L~~L~l~~c~~l~~~ 1177 (1388)
.+|.. ...++.|++++ +.++.+... ....++|+.|++++|. +..++.. ....++|+.|++++| .+..+
T Consensus 395 -~l~~~----~~~l~~L~ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~L~~L~Ls~N-~l~~~ 466 (844)
T 3j0a_A 395 -TLPKI----NLTANLIHLSE-NRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGEN-MLQLA 466 (844)
T ss_dssp -CCCCC----CTTCCEEECCS-CCCCSSTTHHHHTTCTTCCEEEEESCC-CCCCCSSSSSCSCTTCCBCEEESC-CCSSS
T ss_pred -ccccc----ccccceeeccc-CccccCchhhhhhcCCccceeeCCCCc-ccccccccccccCCccccccCCCC-ccccc
Confidence 23332 12278888887 455554221 1123458999998854 4433221 234588999999986 34332
Q ss_pred ccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcC-Cc-CccceEEeccCCCCcccCCCCCCCccceeec
Q 045318 1178 AEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNL-HQ-FSIEILLIQDCPSLGSFTADCFPTKVSALGI 1255 (1388)
Q Consensus 1178 ~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~-~~-~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l 1255 (1388)
+..... ...+..+++|++|++++| .++.++... .. ++|+.|++++| .++.++...++++|+.|++
T Consensus 467 ~~~~~~-----------~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~L 533 (844)
T 3j0a_A 467 WETELC-----------WDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDI 533 (844)
T ss_dssp CCSCCC-----------SSCSSCBCCEECCCCCHH-HHTTCCTTSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEE
T ss_pred cccccc-----------hhhhcCcccccEEECCCC-cccccChhHccchhhhheeECCCC-CCCccChhhhhccccEEEC
Confidence 221110 012345788999999985 677776543 23 89999999988 6777887778899999999
Q ss_pred ccccCCcchhcccccccCccceeEecCC
Q 045318 1256 DYLTIHKPFFELGLRRFTSLRELRLYGG 1283 (1388)
Q Consensus 1256 ~~~~l~~~~~~~~l~~l~~L~~L~l~~~ 1283 (1388)
++|.+.+..+. .+.+|+.|++++|
T Consensus 534 s~N~l~~~~~~----~~~~L~~l~l~~N 557 (844)
T 3j0a_A 534 SRNQLLAPNPD----VFVSLSVLDITHN 557 (844)
T ss_dssp EEECCCCCCSC----CCSSCCEEEEEEE
T ss_pred CCCcCCCCChh----HhCCcCEEEecCC
Confidence 99998766543 3568888998884
No 10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.97 E-value=1.8e-31 Score=325.30 Aligned_cols=268 Identities=18% Similarity=0.237 Sum_probs=203.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCc-eEEEEeCCccCHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDL-KAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~-~~wv~~s~~~~~~~~~~~ 260 (1388)
..|||++++++|.++|... +..++|+|+||||+||||||+++|++.+++.+|+. ++||++++.++...++..
T Consensus 129 ~~VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~ 201 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCCCCCHHHHHHH
Confidence 3599999999999999863 23689999999999999999999998888999986 999999999999888888
Q ss_pred HHHHhcCCC---C---C-----CCcHHHHHHHHHhhc---CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc
Q 045318 261 ILRSICMHT---D---A-----DDDLNSLQVKLKDGL---SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 261 i~~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
+++.++... . . ..+.+++...+++.+ .+||+||||||||+. ..|+.+. +||+|||||
T Consensus 202 Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f~-------pGSRILVTT 272 (1221)
T 1vt4_I 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAFN-------LSCKILLTT 272 (1221)
T ss_dssp HHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHHH-------SSCCEEEEC
T ss_pred HHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChH--HHHHhhC-------CCeEEEEec
Confidence 877543211 0 0 113445566677655 789999999999984 5676642 689999999
Q ss_pred CChhHHhhcCCCceEeCC------CCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCC
Q 045318 327 RNQSVASMMGSVSAYELK------KLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKS 400 (1388)
Q Consensus 327 R~~~v~~~~~~~~~~~l~------~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~ 400 (1388)
|++.++..+.....|+++ +|+++|||+||.+. ++.. . .++..+| |+|+||||+++|+.|+.+.
T Consensus 273 Rd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~----~---eeL~~eI---CgGLPLALkLaGs~Lr~k~ 341 (1221)
T 1vt4_I 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR----P---QDLPREV---LTTNPRRLSIIAESIRDGL 341 (1221)
T ss_dssp SCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC----T---TTHHHHH---CCCCHHHHHHHHHHHHHSC
T ss_pred cChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC----H---HHHHHHH---hCCCHHHHHHHHHHHhCCC
Confidence 999998654433456666 99999999999998 3322 1 1233333 9999999999999999874
Q ss_pred -CHHHHHH--------HHhhhccCCCCCC-CchhHhh----------HHHHHHHHHHcCCcCCCCCcchHHHHHHHHHHH
Q 045318 401 -NPFDWRN--------VLNNKIWNLPEEG-GDIMRAL----------KNDVVLVWMAEGLLEPDTSEMKMEELGRSYFRE 460 (1388)
Q Consensus 401 -~~~~w~~--------~~~~~~~~~~~~~-~~~~~~l----------~~~li~~wia~g~i~~~~~~~~~~~~~~~~~~~ 460 (1388)
..+.|.. +++..+..++... +.+|..+ ++.++.+|+++| ++.++.++++
T Consensus 342 ~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------eedAe~~L~e 410 (1221)
T 1vt4_I 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KSDVMVVVNK 410 (1221)
T ss_dssp SSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SHHHHHHHHH
T ss_pred CCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCC-----------HHHHHHHHHH
Confidence 5667854 3333444565554 4444333 567888998876 1247889999
Q ss_pred HHhCCCCccccCCCcccccchHHHHHH
Q 045318 461 LHSRSFFQKSYMDSRFIMHDLITDLAQ 487 (1388)
Q Consensus 461 L~~~~li~~~~~~~~~~mHdli~d~a~ 487 (1388)
|+++|||+......+|+|||++++++.
T Consensus 411 LvdRSLLq~d~~~~rYrMHDLllELr~ 437 (1221)
T 1vt4_I 411 LHKYSLVEKQPKESTISIPSIYLELKV 437 (1221)
T ss_dssp HHTSSSSSBCSSSSEEBCCCHHHHHHH
T ss_pred HHhhCCEEEeCCCCEEEehHHHHHHhc
Confidence 999999998645678999999999663
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.97 E-value=6.8e-30 Score=332.89 Aligned_cols=266 Identities=18% Similarity=0.159 Sum_probs=152.4
Q ss_pred ccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccc
Q 045318 939 QELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQ 1018 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 1018 (1388)
..+++|+.|++++|.++.++. ..+..+++|+.|+++++. +..+.... +..+++|+.|++++|.+....+.
T Consensus 287 ~~l~~L~~L~L~~n~i~~~~~---~~~~~l~~L~~L~Ls~N~-l~~~~~~~------~~~l~~L~~L~L~~N~i~~~~~~ 356 (844)
T 3j0a_A 287 ETLKDLKVLNLAYNKINKIAD---EAFYGLDNLQVLNLSYNL-LGELYSSN------FYGLPKVAYIDLQKNHIAIIQDQ 356 (844)
T ss_dssp SSCCCCCEEEEESCCCCEECT---TTTTTCSSCCEEEEESCC-CSCCCSCS------CSSCTTCCEEECCSCCCCCCCSS
T ss_pred hcCCCCCEEECCCCcCCCCCh---HHhcCCCCCCEEECCCCC-CCccCHHH------hcCCCCCCEEECCCCCCCccChh
Confidence 344556666666666555533 235556666666666643 22222111 44566666666666665555555
Q ss_pred cccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCcCcccchhhhhhccC
Q 045318 1019 TLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCHDLRTLIDEDQISGM 1098 (1388)
Q Consensus 1019 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~ 1098 (1388)
.|..+++|++|++++|... .++. +++|+.|.+++|. +..++. ...+++.|+++++. +..+.
T Consensus 357 ~~~~l~~L~~L~Ls~N~l~-~i~~------~~~L~~L~l~~N~-l~~l~~--~~~~l~~L~ls~N~-l~~l~-------- 417 (844)
T 3j0a_A 357 TFKFLEKLQTLDLRDNALT-TIHF------IPSIPDIFLSGNK-LVTLPK--INLTANLIHLSENR-LENLD-------- 417 (844)
T ss_dssp CSCSCCCCCEEEEETCCSC-CCSS------CCSCSEEEEESCC-CCCCCC--CCTTCCEEECCSCC-CCSST--------
T ss_pred hhcCCCCCCEEECCCCCCC-cccC------CCCcchhccCCCC-cccccc--cccccceeecccCc-cccCc--------
Confidence 5666667777777766532 2221 4556666666643 334432 24566666666652 22110
Q ss_pred CCCCCCCCCCCccccccceeecCCCCCcccccCC--CCCCcccCceeEecCCCcccc------CCCCCCccccccEEecc
Q 045318 1099 KKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSL--KGLPATLEDIKVKNCSKLLFL------SKRGALPKVLKDLYIYE 1170 (1388)
Q Consensus 1099 ~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~sL~~L~l~~c~~l~~l------~~~~~~~~~L~~L~l~~ 1170 (1388)
.+..+..+++ |+.|+++++ .++.++.. ...+++|+.|++++|. +... +.....+++|+.|++++
T Consensus 418 -----~~~~~~~l~~-L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~ 489 (844)
T 3j0a_A 418 -----ILYFLLRVPH-LQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNH 489 (844)
T ss_dssp -----THHHHTTCTT-CCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCH
T ss_pred -----hhhhhhcCCc-cceeeCCCC-cccccccccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCC
Confidence 0001112223 777777774 44433221 1223558888887754 3222 12234457888888888
Q ss_pred CCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccCCCCcccCCCCCCCcc
Q 045318 1171 CSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDCPSLGSFTADCFPTKV 1250 (1388)
Q Consensus 1171 c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~L 1250 (1388)
| .+..++.... ..+++|++|+++++ .++.+|.....++|+.|++++| .+...+...+ ++|
T Consensus 490 N-~l~~~~~~~~----------------~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~N-~l~~~~~~~~-~~L 549 (844)
T 3j0a_A 490 N-YLNSLPPGVF----------------SHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISRN-QLLAPNPDVF-VSL 549 (844)
T ss_dssp H-HHTTCCTTSS----------------SSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEEE-CCCCCCSCCC-SSC
T ss_pred C-cccccChhHc----------------cchhhhheeECCCC-CCCccChhhhhccccEEECCCC-cCCCCChhHh-CCc
Confidence 6 5655554332 45678999999884 6888877655588999999988 4444444444 578
Q ss_pred ceeecccccCC
Q 045318 1251 SALGIDYLTIH 1261 (1388)
Q Consensus 1251 ~~L~l~~~~l~ 1261 (1388)
+.|++++|++.
T Consensus 550 ~~l~l~~Np~~ 560 (844)
T 3j0a_A 550 SVLDITHNKFI 560 (844)
T ss_dssp CEEEEEEECCC
T ss_pred CEEEecCCCcc
Confidence 99999998853
No 12
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.97 E-value=1.1e-30 Score=330.07 Aligned_cols=515 Identities=16% Similarity=0.123 Sum_probs=326.7
Q ss_pred ccCCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-cccccc
Q 045318 508 KFSKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGD 586 (1388)
Q Consensus 508 ~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~ 586 (1388)
.++..++++.+..+.+..+. ...|.++++|++| +++.|.+....|..|..+++|++|+|++|.+..+ |..|++
T Consensus 30 ~l~~~l~~L~Ls~n~i~~~~-~~~~~~l~~L~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 103 (606)
T 3t6q_A 30 TLPNSTECLEFSFNVLPTIQ-NTTFSRLINLTFL-----DLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSG 103 (606)
T ss_dssp TSCTTCCEEECTTCCCSEEC-TTTSTTCTTCSEE-----ECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSS
T ss_pred CCCCcCcEEEccCCccCcCC-hhHhccCccceEE-----ECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcc
Confidence 34567788888776655432 2467788888888 4666777666677788888899999988888766 568888
Q ss_pred CcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCC
Q 045318 587 LKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLP 665 (1388)
Q Consensus 587 l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 665 (1388)
+++|++|++++|.+..+ |..++++++|++|++++|......++.+..+++|++|++++|.+....|..++.+++|+.+
T Consensus 104 l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l- 182 (606)
T 3t6q_A 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL- 182 (606)
T ss_dssp CTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSE-
T ss_pred cccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhccccee-
Confidence 88999999998888887 6778888889999998886544232445558888899888888554445667777777744
Q ss_pred ceEeccC--CCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCC
Q 045318 666 YFVVGKN--TGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLR 743 (1388)
Q Consensus 666 ~~~~~~~--~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~ 743 (1388)
.+....+ .+.....+. ...| ....+..... .+..+..+.++....+............ .....+..+.
T Consensus 183 ~L~l~~n~l~~~~~~~~~-~~~L----~~L~l~~~~~----~~~~~~~l~~~~l~~l~~~~~~~~~~~~-i~~~~~~~l~ 252 (606)
T 3t6q_A 183 SLNLNGNDIAGIEPGAFD-SAVF----QSLNFGGTQN----LLVIFKGLKNSTIQSLWLGTFEDMDDED-ISPAVFEGLC 252 (606)
T ss_dssp EEECTTCCCCEECTTTTT-TCEE----EEEECTTCSC----HHHHHHHTTTCEEEEEECCCCTTSCCCC-CCGGGGGGGG
T ss_pred EEecCCCccCccChhHhh-hccc----cccccCCchh----HHHHhhhccccchhheechhhccccccc-cChhHhchhh
Confidence 1222221 111111111 1112 2222222221 1222333444444444433322211110 0111222222
Q ss_pred CCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCC
Q 045318 744 PHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSF 823 (1388)
Q Consensus 744 ~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f 823 (1388)
.. +|+.|+++++....++..... .+++|++|++++|.+....+.++.+++|++|++++|......+..+ ..+
T Consensus 253 ~~-~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~------~~l 324 (606)
T 3t6q_A 253 EM-SVESINLQKHYFFNISSNTFH-CFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISA------SNF 324 (606)
T ss_dssp GS-EEEEEECTTCCCSSCCTTTTT-TCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCG------GGC
T ss_pred cC-ceeEEEeecCccCccCHHHhc-cccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhh------hcc
Confidence 22 678888888877766654322 3788888888888776443467888888888888885443333233 237
Q ss_pred CCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccC--C---CCCCCccEEEEecccCccc---cCCCC
Q 045318 824 PSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRL--P---EHLPSLKTLVIQECEQLLV---TVPSI 895 (1388)
Q Consensus 824 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~--p---~~l~~L~~L~i~~~~~~~~---~~~~l 895 (1388)
++|+.|.+.++...... ....+..+++|++|++++ +.+.+.. | ..+++|+.|.+.+|..... .+..+
T Consensus 325 ~~L~~L~l~~n~~~~~~----~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 399 (606)
T 3t6q_A 325 PSLTHLSIKGNTKRLEL----GTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKEC 399 (606)
T ss_dssp TTCSEEECCSCSSCCBC----CSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTC
T ss_pred CcCCEEECCCCCccccc----chhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCC
Confidence 78888888776432121 122356688888888888 4554332 2 3567788888877754322 34457
Q ss_pred CcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCccEEE
Q 045318 896 PTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLE 975 (1388)
Q Consensus 896 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~ 975 (1388)
++|+.|+++++...... +...+..+++|++|++++|.+..... ..+..+++|+.|+
T Consensus 400 ~~L~~L~l~~n~l~~~~---------------------~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~ 455 (606)
T 3t6q_A 400 PQLELLDLAFTRLKVKD---------------------AQSPFQNLHLLKVLNLSHSLLDISSE---QLFDGLPALQHLN 455 (606)
T ss_dssp TTCSEEECTTCCEECCT---------------------TCCTTTTCTTCCEEECTTCCCBTTCT---TTTTTCTTCCEEE
T ss_pred ccCCeEECCCCcCCCcc---------------------cchhhhCcccCCEEECCCCccCCcCH---HHHhCCCCCCEEE
Confidence 88888888877543211 11123567888899999888776543 4477888999999
Q ss_pred EcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccce
Q 045318 976 IGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESL 1055 (1388)
Q Consensus 976 l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L 1055 (1388)
+++|......... ...+..+++|++|++++|......|..+..+++|++|++++|+.....|..+ ..+++| .|
T Consensus 456 L~~n~l~~~~~~~----~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~~L-~L 528 (606)
T 3t6q_A 456 LQGNHFPKGNIQK----TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEAL--SHLKGI-YL 528 (606)
T ss_dssp CTTCBCGGGEECS----SCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGG--TTCCSC-EE
T ss_pred CCCCCCCcccccc----chhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHh--Cccccc-EE
Confidence 9887542211000 0114457889999999998888888888889999999999998777777777 447778 88
Q ss_pred eeccCCCccccccc--cCCCCccEEEeecCc
Q 045318 1056 NVVDCNSLTYIARV--QLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1056 ~l~~c~~l~~~~~~--~~~~sL~~L~l~~c~ 1084 (1388)
++++|.. +.+++. ...++|+.|++++|+
T Consensus 529 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 529 NLASNHI-SIILPSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp ECCSSCC-CCCCGGGHHHHHTSSEEECTTCC
T ss_pred ECcCCcc-cccCHhhcccCCCCCEEeCCCCC
Confidence 8888753 344332 335788899888875
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=2.4e-29 Score=313.69 Aligned_cols=464 Identities=19% Similarity=0.205 Sum_probs=304.8
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.|++|+|++|.++.++ ..++++++|++|+|++|.+..+| .+++++++|++|++++|......|..|+++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 57999999999998774 78999999999999999999885 67999999999999998655555556999999999999
Q ss_pred CCCCCcc-cCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 643 YNVPLLE-GMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 643 ~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
++|.+.. ..|..++++++|++|...... ......+..+.++++|+.|+++
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~-----------------------------~~~~~~~~~~~~l~~L~~L~L~ 156 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVE-----------------------------TFSEIRRIDFAGLTSLNELEIK 156 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESS-----------------------------SCCEECTTTTTTCCEEEEEEEE
T ss_pred CCCcccccchhhhhhccCCccEEECCCCc-----------------------------cccccCHhhhhcccccCeeecc
Confidence 9998543 356678888888877221110 0111122356678889999999
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCC----CCCCCCCCCcc
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTS----LPSIGQLPALK 797 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~~l~~l~~L~ 797 (1388)
+|.+.+..+ ..+..+++|+.|+++++....+|.++.. .+++|++|++++|.+... .+....+++|+
T Consensus 157 ~n~l~~~~~---------~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~ 226 (549)
T 2z81_A 157 ALSLRNYQS---------QSLKSIRDIHHLTLHLSESAFLLEIFAD-ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK 226 (549)
T ss_dssp ETTCCEECT---------TTTTTCSEEEEEEEECSBSTTHHHHHHH-STTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred CCcccccCh---------hhhhccccCceEecccCcccccchhhHh-hcccccEEEccCCccccccccccchhhhhhccc
Confidence 888765322 2356677889999988887777776643 478999999999987663 22345678888
Q ss_pred eeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCcccccc--------
Q 045318 798 HLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGR-------- 869 (1388)
Q Consensus 798 ~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~-------- 869 (1388)
.|++++|......+..+. .....+++|+.|++++| .+.+.
T Consensus 227 ~L~l~~n~l~~~~~~~l~-------------------------------~~~~~~~~L~~l~l~~~-~~~~~~~~~~~~~ 274 (549)
T 2z81_A 227 KLAFRGSVLTDESFNELL-------------------------------KLLRYILELSEVEFDDC-TLNGLGDFNPSES 274 (549)
T ss_dssp EEEEESCEEEHHHHHHHH-------------------------------GGGGGCTTCCEEEEESC-EEECCSCCCCCTT
T ss_pred ceeccccccchhHHHHHH-------------------------------HHhhhhccccccccccc-cccccccccccch
Confidence 998888742211111100 01233567788888875 33321
Q ss_pred -CCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEE
Q 045318 870 -LPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELA 948 (1388)
Q Consensus 870 -~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~ 948 (1388)
.+..+++++.|.+.++ ...... .+. ++ ...+...++|+.|+
T Consensus 275 ~~~~~l~~L~~L~l~~~---------------------~i~~~~--~~~--------~l-------~~~~~~~~~L~~L~ 316 (549)
T 2z81_A 275 DVVSELGKVETVTIRRL---------------------HIPQFY--LFY--------DL-------STVYSLLEKVKRIT 316 (549)
T ss_dssp TCCCCCTTCCEEEEESC---------------------BCSCGG--GSC--------CC-------CHHHHHSTTCCEEE
T ss_pred hhhhhhccccccccccc---------------------ccchhh--hcc--------cc-------hhhhhhcccceEEE
Confidence 1123344444444333 211000 000 00 00123456788888
Q ss_pred EeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccc--ccccCCCcc
Q 045318 949 ICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLP--QTLLSLSSL 1026 (1388)
Q Consensus 949 l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p--~~~~~l~~L 1026 (1388)
+++|.+..++.. .++.+++|+.|+++++.....++... ..++.+++|++|++++|.+....+ ..+..+++|
T Consensus 317 l~~n~l~~ip~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 317 VENSKVFLVPCS---FSQHLKSLEFLDLSENLMVEEYLKNS----ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp EESSCCCCCCHH---HHHHCTTCCEEECCSSCCCHHHHHHH----TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred eccCccccCCHH---HHhcCccccEEEccCCccccccccch----hhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 888887766542 23568888888888876544333211 114457788888888887655332 446778888
Q ss_pred ceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCcCcccchhhhhhccCCCCCCCCC
Q 045318 1027 RQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCHDLRTLIDEDQISGMKKDGDIPS 1106 (1388)
Q Consensus 1027 ~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~ 1106 (1388)
++|++++|+ ++.+|..+ ..+++|++|++++|. ++.++. ..+++|+.|++++| +++. ++
T Consensus 390 ~~L~Ls~N~-l~~lp~~~--~~~~~L~~L~Ls~N~-l~~l~~-~~~~~L~~L~Ls~N-~l~~---------------~~- 447 (549)
T 2z81_A 390 TSLDISRNT-FHPMPDSC--QWPEKMRFLNLSSTG-IRVVKT-CIPQTLEVLDVSNN-NLDS---------------FS- 447 (549)
T ss_dssp CEEECTTCC-CCCCCSCC--CCCTTCCEEECTTSC-CSCCCT-TSCTTCSEEECCSS-CCSC---------------CC-
T ss_pred CEEECCCCC-CccCChhh--cccccccEEECCCCC-cccccc-hhcCCceEEECCCC-Chhh---------------hc-
Confidence 888888886 44677665 347788888888865 554443 34578888888887 3332 11
Q ss_pred CCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCC-CCCccccccEEeccCC
Q 045318 1107 GSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKR-GALPKVLKDLYIYECS 1172 (1388)
Q Consensus 1107 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~-~~~~~~L~~L~l~~c~ 1172 (1388)
..++. |++|++++| .++.++.. ...++|+.|++++| .+..+++. ...+++|+.|++++|+
T Consensus 448 --~~l~~-L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 448 --LFLPR-LQELYISRN-KLKTLPDA-SLFPVLLVMKISRN-QLKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp --CCCTT-CCEEECCSS-CCSSCCCG-GGCTTCCEEECCSS-CCCCCCTTGGGGCTTCCEEECCSSC
T ss_pred --ccCCh-hcEEECCCC-ccCcCCCc-ccCccCCEEecCCC-ccCCcCHHHHhcCcccCEEEecCCC
Confidence 12333 888888885 67777653 34556888888875 45555443 4456788888888875
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.96 E-value=6e-29 Score=315.54 Aligned_cols=364 Identities=14% Similarity=0.126 Sum_probs=201.8
Q ss_pred ccccccccchhcccccceeecCCCcchh-----------------hcchhhc--ccCCCCeeecCCCCCcccCcCCCCCC
Q 045318 598 TLIETLPESVNTLYNLHTLLLESCSRLK-----------------KLCADMG--NLIKLRHLNNYNVPLLEGMPLRIGHL 658 (1388)
Q Consensus 598 ~~i~~lp~~i~~L~~L~~L~L~~~~~~~-----------------~lp~~i~--~L~~L~~L~l~~~~~~~~~p~~i~~L 658 (1388)
|.+..+|.+++++++|++|+|++|.... .+|..++ +|++|++|++++|.+...+|..++++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 5666677778888888888887776544 2777776 78888888888777667777777777
Q ss_pred CCCCCCCceEeccCCCCCcccccccccccceeEeecccCCC-Cchhhhhh-------hcCCCCCCCeEEEEeeCCCCCCC
Q 045318 659 SCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVK-DSGDARDA-------ELNGKRNLDVLFLEWTNSSGSSR 730 (1388)
Q Consensus 659 ~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~-~~~~~~~~-------~l~~~~~L~~L~L~~~~~~~~~~ 730 (1388)
++|++|.. ..+. ..+...+. .+..+++|+.|++++|.+.. .+
T Consensus 515 ~~L~~L~L-----------------------------s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip 564 (876)
T 4ecn_A 515 PELQSLNI-----------------------------ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FP 564 (876)
T ss_dssp SSCCEEEC-----------------------------TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CC
T ss_pred CCCCEEEC-----------------------------cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cC
Confidence 77766611 1111 11100111 22334566666666665542 11
Q ss_pred CchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCC-cceeeccCCcCcE
Q 045318 731 EPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPA-LKHLSIIGMALVK 808 (1388)
Q Consensus 731 ~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~-L~~L~L~~~~~~~ 808 (1388)
. ...+..+++|+.|+++++....+| .+. .+++|+.|+|++|.+. .+| .+..+++ |+.|++++|...
T Consensus 565 ~-------~~~l~~L~~L~~L~Ls~N~l~~lp-~~~--~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 565 A-------SASLQKMVKLGLLDCVHNKVRHLE-AFG--TNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp C-------HHHHTTCTTCCEEECTTSCCCBCC-CCC--TTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred C-------hhhhhcCCCCCEEECCCCCcccch-hhc--CCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 1 001334455555555555555555 332 2555666666655555 333 4555555 555555555321
Q ss_pred EeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCc
Q 045318 809 SVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQL 888 (1388)
Q Consensus 809 ~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~ 888 (1388)
.++..+ .....++|+.|++++ +.+.+.+|.....+
T Consensus 633 ~lp~~~---------------------------------~~~~~~~L~~L~Ls~-N~l~g~ip~l~~~l----------- 667 (876)
T 4ecn_A 633 YIPNIF---------------------------------NAKSVYVMGSVDFSY-NKIGSEGRNISCSM----------- 667 (876)
T ss_dssp SCCSCC---------------------------------CTTCSSCEEEEECCS-SCTTTTSSSCSSCT-----------
T ss_pred cCchhh---------------------------------hccccCCCCEEECcC-CcCCCccccchhhh-----------
Confidence 111000 011134577777777 45654443211000
Q ss_pred cccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCcc----
Q 045318 889 LVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGL---- 964 (1388)
Q Consensus 889 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~---- 964 (1388)
.....++|+.|++++|.... ++...+..+++|+.|++++|.++.++......
T Consensus 668 --~~~~~~~L~~L~Ls~N~L~~----------------------lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~ 723 (876)
T 4ecn_A 668 --DDYKGINASTVTLSYNEIQK----------------------FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723 (876)
T ss_dssp --TTCCCCCEEEEECCSSCCCS----------------------CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSC
T ss_pred --ccccCCCcCEEEccCCcCCc----------------------cCHHHHccCCCCCEEECCCCcCCccChHHhcccccc
Confidence 00112355666665554221 23333456778888888888887766543221
Q ss_pred ccCCCCccEEEEcCCCchhhhhhhHhhhhhhc-CCCCcceEEEecCCCCcccccccccCCCccceEEEcc------CCCC
Q 045318 965 LQDISSLHKLEIGNCPELLSLVAAEEADQQQQ-GLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISE------CHSM 1037 (1388)
Q Consensus 965 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~------~~~l 1037 (1388)
..++++|+.|++++| .+..++... . ..+++|+.|+|++|.+.+ +|..+..+++|+.|+|++ |...
T Consensus 724 l~nl~~L~~L~Ls~N-~L~~lp~~l------~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~ 795 (876)
T 4ecn_A 724 YKNTYLLTTIDLRFN-KLTSLSDDF------RATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRIL 795 (876)
T ss_dssp CTTGGGCCEEECCSS-CCCCCCGGG------STTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCC
T ss_pred ccccCCccEEECCCC-CCccchHHh------hhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccc
Confidence 223447888888775 444555442 2 257778888888876665 677777788888888866 4455
Q ss_pred ccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCc
Q 045318 1038 KSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1038 ~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~ 1084 (1388)
..+|..+.. +++|+.|++++|.. ..+|.. +.++|+.|++++|+
T Consensus 796 ~~ip~~l~~--L~~L~~L~Ls~N~L-~~Ip~~-l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 796 RQWPTGITT--CPSLIQLQIGSNDI-RKVDEK-LTPQLYILDIADNP 838 (876)
T ss_dssp CCCCTTGGG--CSSCCEEECCSSCC-CBCCSC-CCSSSCEEECCSCT
T ss_pred ccChHHHhc--CCCCCEEECCCCCC-CccCHh-hcCCCCEEECCCCC
Confidence 566666633 66667777666543 555433 33455555555553
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.96 E-value=5.7e-29 Score=312.66 Aligned_cols=279 Identities=14% Similarity=0.158 Sum_probs=160.3
Q ss_pred CCCcceEEEeccCCCCCCc--ccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccC
Q 045318 745 HENLKQLAIRGYGGANFPI--WLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVS 822 (1388)
Q Consensus 745 ~~~L~~L~l~~~~~~~~p~--~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~ 822 (1388)
+++|+.|+++++....+|. ++.. +++|++|++++|.+...+|.++.+++|++|++++|... .++..+..
T Consensus 304 l~~L~~L~L~~n~l~~ip~~~~l~~--l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~-~lp~~l~~------ 374 (636)
T 4eco_A 304 GEKIQIIYIGYNNLKTFPVETSLQK--MKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQIT-EIPANFCG------ 374 (636)
T ss_dssp GGTCCEEECCSSCCSSCCCHHHHTT--CTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEE-ECCTTSEE------
T ss_pred CCCCCEEECCCCcCCccCchhhhcc--CCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccc-cccHhhhh------
Confidence 3556666666666556666 5543 67777777777776655666677777777777776433 44333222
Q ss_pred CCC-cceeeccccccccccccCCCCCccc--ccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcce
Q 045318 823 FPS-LETLFFGDMPEWEDWIPHQPSQEVE--VFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLC 899 (1388)
Q Consensus 823 f~~-L~~L~l~~~~~l~~~~~~~~~~~~~--~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~ 899 (1388)
+++ |+.|.+.++.- ..+. ..+. .+++|+.|++++ +.+.+..|..++... ......++|+
T Consensus 375 l~~~L~~L~Ls~N~l-~~lp-----~~~~~~~l~~L~~L~Ls~-N~l~~~~p~~l~~~~-----------~~~~~~~~L~ 436 (636)
T 4eco_A 375 FTEQVENLSFAHNKL-KYIP-----NIFDAKSVSVMSAIDFSY-NEIGSVDGKNFDPLD-----------PTPFKGINVS 436 (636)
T ss_dssp ECTTCCEEECCSSCC-SSCC-----SCCCTTCSSCEEEEECCS-SCTTTTTTCSSCTTC-----------SSCCCCCCEE
T ss_pred hcccCcEEEccCCcC-cccc-----hhhhhcccCccCEEECcC-CcCCCcchhhhcccc-----------cccccCCCCC
Confidence 444 55555544331 1110 1111 234677777777 466555555443100 0001233555
Q ss_pred EEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCcc----ccCCCCccEEE
Q 045318 900 KLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGL----LQDISSLHKLE 975 (1388)
Q Consensus 900 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~----~~~l~~L~~L~ 975 (1388)
.|+++++.... ++...+..+++|++|++++|.++.++...... +.++++|+.|+
T Consensus 437 ~L~Ls~N~l~~----------------------lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~ 494 (636)
T 4eco_A 437 SINLSNNQISK----------------------FPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSID 494 (636)
T ss_dssp EEECCSSCCCS----------------------CCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEE
T ss_pred EEECcCCccCc----------------------CCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEE
Confidence 55555543221 22233456788888888888888766543221 12334788888
Q ss_pred EcCCCchhhhhhhHhhhhhhc-CCCCcceEEEecCCCCcccccccccCCCccceEEEc------cCCCCccChhhhccCC
Q 045318 976 IGNCPELLSLVAAEEADQQQQ-GLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKIS------ECHSMKSLPEALMHND 1048 (1388)
Q Consensus 976 l~~~~~l~~l~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~------~~~~l~~~p~~~~~~~ 1048 (1388)
+++|. ++.++... + ..+++|+.|++++|.+.+ +|..+..+++|++|+++ +|...+.+|..+..
T Consensus 495 Ls~N~-l~~lp~~~------~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~-- 564 (636)
T 4eco_A 495 LRFNK-LTKLSDDF------RATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL-- 564 (636)
T ss_dssp CCSSC-CCBCCGGG------STTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG--
T ss_pred CcCCc-CCccChhh------hhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc--
Confidence 88754 44555442 2 257788888888887766 77777788888888884 45556667766643
Q ss_pred CCCccceeeccCCCccccccccCCCCccEEEeecCc
Q 045318 1049 NAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1049 l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~ 1084 (1388)
+++|+.|++++|.. ..+|.. +.++|+.|++++|+
T Consensus 565 l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 565 CPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp CSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred CCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence 67777777776653 555533 33556666655553
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.96 E-value=4.7e-28 Score=303.98 Aligned_cols=148 Identities=18% Similarity=0.168 Sum_probs=109.2
Q ss_pred cCCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccC
Q 045318 509 FSKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDL 587 (1388)
Q Consensus 509 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l 587 (1388)
++..++++.+..+....+. ...|.++++|++| +++.|.+....+..|..+++|++|+|++|.++.+| ..|+++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L-----~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 99 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVL-----DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 99 (570)
T ss_dssp SCSSCCEEECCSCCCCEEC-TTTTTTCSSCCEE-----ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTC
T ss_pred ccccccEEEccCCccCccC-hhHhhCCCCceEE-----ECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCc
Confidence 4556778877766554332 2356778888888 45666666555666788888888888888888776 678888
Q ss_pred cccceeeccCcccccccc-chhcccccceeecCCCcchh-hcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCC
Q 045318 588 KHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLK-KLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQ 662 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~ 662 (1388)
.+|++|++++|.+..+|. .++++++|++|++++|.... .+|..++++++|++|++++|.+....|..++.+++|+
T Consensus 100 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 176 (570)
T 2z63_A 100 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176 (570)
T ss_dssp TTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCT
T ss_pred cccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccc
Confidence 888888888888888865 68888888888888875444 3688888888888888888875444455666666663
No 17
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.96 E-value=2.4e-28 Score=337.11 Aligned_cols=283 Identities=22% Similarity=0.309 Sum_probs=212.5
Q ss_pred cccCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccC-CceEEEEeCCccC-
Q 045318 177 LVNEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-ESHF-DLKAWTCVSDDFD- 253 (1388)
Q Consensus 177 ~~~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~- 253 (1388)
+.+...||||++++++|.++|.... +..++|+|+||||+||||||+++|++.+. ..+| +.++||++++..+
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~------~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN------GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT------TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHH
T ss_pred CCCCceeccHHHHHHHHHHHHhhcc------CCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCch
Confidence 3455679999999999999997543 45799999999999999999999998643 4445 6777999988543
Q ss_pred -HHHHHHHHHHHhcCCCC----CCCcHHHHHHHHHhhcCCc--eEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEc
Q 045318 254 -AIKVTKAILRSICMHTD----ADDDLNSLQVKLKDGLSRK--KFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTT 326 (1388)
Q Consensus 254 -~~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~k--~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTt 326 (1388)
....+..++..+..... ...+.+++...++..+.++ ||||||||||+. ..|..+ ++||+|||||
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~~-------~~~~~ilvTt 264 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKAF-------DNQCQILLTT 264 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTTT-------CSSCEEEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH--HHHHhh-------cCCCEEEEEc
Confidence 44556777777765432 2456788888999999877 999999999875 455543 5789999999
Q ss_pred CChhHHhh-cCCCceEeCCC-CChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHH
Q 045318 327 RNQSVASM-MGSVSAYELKK-LTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFD 404 (1388)
Q Consensus 327 R~~~v~~~-~~~~~~~~l~~-L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~ 404 (1388)
|++.|+.. +.....+++.+ |++++|++||...++.. .+.+.+++++|+++|+|+||||+++|+.|+.++. .
T Consensus 265 R~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~--~ 337 (1249)
T 3sfz_A 265 RDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPN--R 337 (1249)
T ss_dssp SSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSS--C
T ss_pred CCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChh--H
Confidence 99999854 45557899996 99999999999988432 2234467899999999999999999999987653 4
Q ss_pred HHHHHhhhcc--------------------------CCCCCCCchhHhh----------HHHHHHHHHHcCCcCCCCCcc
Q 045318 405 WRNVLNNKIW--------------------------NLPEEGGDIMRAL----------KNDVVLVWMAEGLLEPDTSEM 448 (1388)
Q Consensus 405 w~~~~~~~~~--------------------------~~~~~~~~~~~~l----------~~~li~~wia~g~i~~~~~~~ 448 (1388)
|...++.... .++.....++..+ +..++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC----------
Confidence 6665543211 1222221222211 45566666432
Q ss_pred hHHHHHHHHHHHHHhCCCCccccCC--CcccccchHHHHHHHhccCc
Q 045318 449 KMEELGRSYFRELHSRSFFQKSYMD--SRFIMHDLITDLAQWAASDS 493 (1388)
Q Consensus 449 ~~~~~~~~~~~~L~~~~li~~~~~~--~~~~mHdli~d~a~~~~~~~ 493 (1388)
++.++.++++|++++|++....+ .+|+|||++|++++..+.++
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred --HHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 45678999999999999987333 36999999999999887654
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.96 E-value=2.5e-27 Score=293.00 Aligned_cols=106 Identities=19% Similarity=0.140 Sum_probs=50.8
Q ss_pred CcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcc--cccccc
Q 045318 943 ILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLV--KLPQTL 1020 (1388)
Q Consensus 943 ~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~p~~~ 1020 (1388)
+|+.|++++|.+..+. .+..+++|+.|++++|..-..++.. +..+++|++|++++|.+.. .+|..+
T Consensus 303 ~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~Ls~n~l~~~~~~~-------~~~l~~L~~L~L~~N~l~~l~~~~~~~ 370 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHML-----CPSKISPFLHLDFSNNLLTDTVFEN-------CGHLTELETLILQMNQLKELSKIAEMT 370 (520)
T ss_dssp CCSEEEEESSCCCCCC-----CCSSCCCCCEEECCSSCCCTTTTTT-------CCCCSSCCEEECCSSCCCBHHHHHHHH
T ss_pred ceeEEEcCCCcccccc-----chhhCCcccEEEeECCccChhhhhh-------hccCCCCCEEEccCCccCccccchHHH
Confidence 4566666666554332 1244555555555554322222221 3345555555555555543 344445
Q ss_pred cCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCC
Q 045318 1021 LSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCN 1061 (1388)
Q Consensus 1021 ~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~ 1061 (1388)
..+++|++|++++|.....+|.... ..+++|++|++++|.
T Consensus 371 ~~l~~L~~L~Ls~N~l~~~l~~~~~-~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 371 TQMKSLQQLDISQNSVSYDEKKGDC-SWTKSLLSLNMSSNI 410 (520)
T ss_dssp TTCTTCCEEECCSSCCBCCGGGCSC-CCCTTCCEEECCSSC
T ss_pred hhCCCCCEEECCCCcCCcccccchh-ccCccCCEEECcCCC
Confidence 5555566666665554443443311 234445555555443
No 19
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=4.3e-29 Score=313.75 Aligned_cols=106 Identities=16% Similarity=0.222 Sum_probs=79.3
Q ss_pred cCCCcceEEEeeeeeeeecccCCcccc--CCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEec------CCC
Q 045318 940 ELPILEELAICNTKVTYLWQTGSGLLQ--DISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELR------SCP 1011 (1388)
Q Consensus 940 ~l~~L~~L~l~~~~l~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~------~~~ 1011 (1388)
.+++|+.|++++|.++.++.. +. .+++|+.|+++++. +..+|.. +..+++|+.|+++ +|.
T Consensus 486 ~l~~L~~L~Ls~N~l~~lp~~----~~~~~l~~L~~L~Ls~N~-l~~ip~~-------~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 486 NTYLLTSIDLRFNKLTKLSDD----FRATTLPYLVGIDLSYNS-FSKFPTQ-------PLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp TGGGCCEEECCSSCCCBCCGG----GSTTTCTTCCEEECCSSC-CSSCCCG-------GGGCSSCCEEECCSCBCTTCCB
T ss_pred ccCCccEEECcCCcCCccChh----hhhccCCCcCEEECCCCC-CCCcChh-------hhcCCCCCEEECCCCcccccCc
Confidence 345788888888888766532 43 78888888888854 4445544 3457888888884 566
Q ss_pred CcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCC
Q 045318 1012 SLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNS 1062 (1388)
Q Consensus 1012 ~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~ 1062 (1388)
..+.+|..+..+++|++|++++|+. +.+|..+. ++|+.|++++|+.
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~----~~L~~L~Ls~N~l 599 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT----PNISVLDIKDNPN 599 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC----TTCCEEECCSCTT
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh----CcCCEEECcCCCC
Confidence 6788888888899999999999986 78887652 6799999998763
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=6.1e-28 Score=306.32 Aligned_cols=358 Identities=15% Similarity=0.140 Sum_probs=199.7
Q ss_pred ccccccccccccCcccceeeccCccccc------------------cccchh--cccccceeecCCCcchhhcchhhccc
Q 045318 575 YNICKISNTIGDLKHLRHLDLSETLIET------------------LPESVN--TLYNLHTLLLESCSRLKKLCADMGNL 634 (1388)
Q Consensus 575 ~~i~~lp~~i~~l~~Lr~L~L~~~~i~~------------------lp~~i~--~L~~L~~L~L~~~~~~~~lp~~i~~L 634 (1388)
|.++.+|..++++++|++|+|++|.+.. +|.+++ ++++|++|+|++|.....+|..+++|
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L 514 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL 514 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence 4455567777777777777777777766 777766 77777777777776666677777777
Q ss_pred CCCCeeecCCCC-Ccc-cCcCCCCCCC-------CCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhh
Q 045318 635 IKLRHLNNYNVP-LLE-GMPLRIGHLS-------CLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDAR 705 (1388)
Q Consensus 635 ~~L~~L~l~~~~-~~~-~~p~~i~~L~-------~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~ 705 (1388)
++|++|++++|. +.. .+|..+++++ +|++|. +..+... ..
T Consensus 515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~-----------------------------Ls~N~L~--~i 563 (876)
T 4ecn_A 515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY-----------------------------MGYNNLE--EF 563 (876)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEE-----------------------------CCSSCCC--BC
T ss_pred CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEE-----------------------------eeCCcCC--cc
Confidence 777777777776 333 4665555443 333331 1111111 11
Q ss_pred hh--hcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCC-ccEEeeecCC
Q 045318 706 DA--ELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSN-LELLRFENCA 782 (1388)
Q Consensus 706 ~~--~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~-L~~L~L~~~~ 782 (1388)
+. .+..+++|+.|++++|.+.. .+ .+..+++|+.|+++++....+|.++.. +++ |+.|+|++|.
T Consensus 564 p~~~~l~~L~~L~~L~Ls~N~l~~-lp----------~~~~L~~L~~L~Ls~N~l~~lp~~l~~--l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 564 PASASLQKMVKLGLLDCVHNKVRH-LE----------AFGTNVKLTDLKLDYNQIEEIPEDFCA--FTDQVEGLGFSHNK 630 (876)
T ss_dssp CCHHHHTTCTTCCEEECTTSCCCB-CC----------CCCTTSEESEEECCSSCCSCCCTTSCE--ECTTCCEEECCSSC
T ss_pred CChhhhhcCCCCCEEECCCCCccc-ch----------hhcCCCcceEEECcCCccccchHHHhh--ccccCCEEECcCCC
Confidence 22 45566666667666665542 11 345566777777777766667766653 566 7777777776
Q ss_pred CCCCCC-CCCCCC--CcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEe
Q 045318 783 MCTSLP-SIGQLP--ALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELS 859 (1388)
Q Consensus 783 ~~~~l~-~l~~l~--~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~ 859 (1388)
+. .+| .++.++ +|+.|++++|.....++. +... .....+++|+.|+
T Consensus 631 L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~-l~~~-----------------------------l~~~~~~~L~~L~ 679 (876)
T 4ecn_A 631 LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRN-ISCS-----------------------------MDDYKGINASTVT 679 (876)
T ss_dssp CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSS-CSSC-----------------------------TTTCCCCCEEEEE
T ss_pred CC-cCchhhhccccCCCCEEECcCCcCCCcccc-chhh-----------------------------hccccCCCcCEEE
Confidence 65 444 344443 377777777753321110 0000 0001134566666
Q ss_pred ecCCccccccCCC----CCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcch
Q 045318 860 LVRCSKLLGRLPE----HLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTG 935 (1388)
Q Consensus 860 l~~C~~L~~~~p~----~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~ 935 (1388)
+++ +.+. .+|. .+++|+.|.+.+|.-..+.... +....
T Consensus 680 Ls~-N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~---------------------~~~~~--------------- 721 (876)
T 4ecn_A 680 LSY-NEIQ-KFPTELFATGSPISTIILSNNLMTSIPENS---------------------LKPKD--------------- 721 (876)
T ss_dssp CCS-SCCC-SCCHHHHHTTCCCSEEECCSCCCSCCCTTS---------------------SSCTT---------------
T ss_pred ccC-CcCC-ccCHHHHccCCCCCEEECCCCcCCccChHH---------------------hcccc---------------
Confidence 665 3444 3442 2334444443332111000000 00000
Q ss_pred hhhccCCCcceEEEeeeeeeeecccCCcccc--CCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecC----
Q 045318 936 LLNQELPILEELAICNTKVTYLWQTGSGLLQ--DISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRS---- 1009 (1388)
Q Consensus 936 ~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~--~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~---- 1009 (1388)
....++++|+.|++++|+++.++.. +. .+++|+.|++++|. +..++.. +..+++|+.|+|++
T Consensus 722 ~~l~nl~~L~~L~Ls~N~L~~lp~~----l~~~~l~~L~~L~Ls~N~-L~~lp~~-------l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 722 GNYKNTYLLTTIDLRFNKLTSLSDD----FRATTLPYLSNMDVSYNC-FSSFPTQ-------PLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp SCCTTGGGCCEEECCSSCCCCCCGG----GSTTTCTTCCEEECCSSC-CSSCCCG-------GGGCTTCCEEECCCCBCT
T ss_pred ccccccCCccEEECCCCCCccchHH----hhhccCCCcCEEEeCCCC-CCccchh-------hhcCCCCCEEECCCCCCc
Confidence 0002344666666666666655432 33 66677777776643 3334433 33466777777755
Q ss_pred --CCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCC
Q 045318 1010 --CPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNS 1062 (1388)
Q Consensus 1010 --~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~ 1062 (1388)
|...+.+|..+..+++|+.|+|++|+. +.+|..+ .++|+.|++++|+.
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l----~~~L~~LdLs~N~l 839 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL----TPQLYILDIADNPN 839 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC----CSSSCEEECCSCTT
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhh----cCCCCEEECCCCCC
Confidence 556677788888888888888888875 7777765 25788888888763
No 21
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.95 E-value=2.4e-27 Score=295.62 Aligned_cols=492 Identities=18% Similarity=0.161 Sum_probs=291.9
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
.+.|++++.++.+|..+. .+|++|+|++|.++.+ |.+++++++|++|++++|......|..|+++++|++|++++|.
T Consensus 8 ~~c~~~~~~l~~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 85 (549)
T 2z81_A 8 GVCDGRSRSFTSIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH 85 (549)
T ss_dssp SEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred ceEECCCCccccccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc
Confidence 346888999999998765 7999999999999988 6789999999999999997666566789999999999999998
Q ss_pred CcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCC
Q 045318 647 LLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSS 726 (1388)
Q Consensus 647 ~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~ 726 (1388)
+....|..++.+++|++|.... +.......+..+..+++|+.|++++|...
T Consensus 86 l~~~~~~~~~~l~~L~~L~Ls~-----------------------------n~l~~~~~~~~~~~l~~L~~L~L~~n~~~ 136 (549)
T 2z81_A 86 LSSLSSSWFGPLSSLKYLNLMG-----------------------------NPYQTLGVTSLFPNLTNLQTLRIGNVETF 136 (549)
T ss_dssp CCSCCHHHHTTCTTCCEEECTT-----------------------------CCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred cCccCHHHhccCCCCcEEECCC-----------------------------CcccccchhhhhhccCCccEEECCCCccc
Confidence 5443334477887777772110 11000011224556677777777777532
Q ss_pred CCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeeccCCc
Q 045318 727 GSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 727 ~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 805 (1388)
+..+. ..+.. +++|++|++++|.+....| .++.+++|++|++++|.
T Consensus 137 ~~~~~--------~~~~~-------------------------l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 137 SEIRR--------IDFAG-------------------------LTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp CEECT--------TTTTT-------------------------CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred cccCH--------hhhhc-------------------------ccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 21110 11233 4455555555554444333 34455555555554442
Q ss_pred CcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecc
Q 045318 806 LVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQEC 885 (1388)
Q Consensus 806 ~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~ 885 (1388)
.. .++..+. ..+++|+.|.+.++.- ...... .......+++|+.|+++++ .+.+..+..+
T Consensus 184 ~~-~~~~~~~-----~~l~~L~~L~L~~n~l-~~~~~~-~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l----------- 243 (549)
T 2z81_A 184 SA-FLLEIFA-----DILSSVRYLELRDTNL-ARFQFS-PLPVDEVSSPMKKLAFRGS-VLTDESFNEL----------- 243 (549)
T ss_dssp ST-THHHHHH-----HSTTTBSEEEEESCBC-TTCCCC-CCSSCCCCCCCCEEEEESC-EEEHHHHHHH-----------
T ss_pred cc-ccchhhH-----hhcccccEEEccCCcc-cccccc-ccchhhhhhcccceecccc-ccchhHHHHH-----------
Confidence 11 0010000 0022222222222110 000000 0001122455666666552 3332111000
Q ss_pred cCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeeccc--CCc
Q 045318 886 EQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQT--GSG 963 (1388)
Q Consensus 886 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~ 963 (1388)
......+++|+.+++++|......... . .....+..+++|+.|++.++.+...... ...
T Consensus 244 ---~~~~~~~~~L~~l~l~~~~~~~~~~~~-----~-----------~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~ 304 (549)
T 2z81_A 244 ---LKLLRYILELSEVEFDDCTLNGLGDFN-----P-----------SESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304 (549)
T ss_dssp ---HGGGGGCTTCCEEEEESCEEECCSCCC-----C-----------CTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCH
T ss_pred ---HHHhhhhcccccccccccccccccccc-----c-----------cchhhhhhhcccccccccccccchhhhcccchh
Confidence 000112334444444444322110000 0 0011125678899999998876553210 011
Q ss_pred cccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccc---ccccCCCccceEEEccCCCCccC
Q 045318 964 LLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLP---QTLLSLSSLRQLKISECHSMKSL 1040 (1388)
Q Consensus 964 ~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p---~~~~~l~~L~~L~l~~~~~l~~~ 1040 (1388)
.+...++|+.|+++++. +..++... +..+++|++|++++|.+.+.+| ..+..+++|++|++++|+.. .+
T Consensus 305 ~~~~~~~L~~L~l~~n~-l~~ip~~~------~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ 376 (549)
T 2z81_A 305 VYSLLEKVKRITVENSK-VFLVPCSF------SQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SM 376 (549)
T ss_dssp HHHHSTTCCEEEEESSC-CCCCCHHH------HHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CH
T ss_pred hhhhcccceEEEeccCc-cccCCHHH------HhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-cc
Confidence 13345789999999854 66776653 3457899999999999887764 34677899999999999754 44
Q ss_pred h---hhhccCCCCCccceeeccCCCccccccc-cCCCCccEEEeecCcCcccchhhhhhccCCCCCCCCCCCCccccccc
Q 045318 1041 P---EALMHNDNAPLESLNVVDCNSLTYIARV-QLPPSLKLLHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLE 1116 (1388)
Q Consensus 1041 p---~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~ 1116 (1388)
+ ..+ ..+++|++|++++| .++.+|.. ..+++|++|++++|. ++ .+|..+ +.+|+
T Consensus 377 ~~~~~~~--~~l~~L~~L~Ls~N-~l~~lp~~~~~~~~L~~L~Ls~N~-l~---------------~l~~~~---~~~L~ 434 (549)
T 2z81_A 377 QKTGEIL--LTLKNLTSLDISRN-TFHPMPDSCQWPEKMRFLNLSSTG-IR---------------VVKTCI---PQTLE 434 (549)
T ss_dssp HHHHHHG--GGCTTCCEEECTTC-CCCCCCSCCCCCTTCCEEECTTSC-CS---------------CCCTTS---CTTCS
T ss_pred ccchhhh--hcCCCCCEEECCCC-CCccCChhhcccccccEEECCCCC-cc---------------cccchh---cCCce
Confidence 3 223 35888999999987 45566643 456899999999885 43 223222 12499
Q ss_pred eeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccchhh
Q 045318 1117 RLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQ 1196 (1388)
Q Consensus 1117 ~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~ 1196 (1388)
.|++++| .++.++ ...++|+.|++++| .+..+|. ....++|+.|++++| .+..++...
T Consensus 435 ~L~Ls~N-~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N-~l~~~~~~~--------------- 492 (549)
T 2z81_A 435 VLDVSNN-NLDSFS---LFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRN-QLKSVPDGI--------------- 492 (549)
T ss_dssp EEECCSS-CCSCCC---CCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSS-CCCCCCTTG---------------
T ss_pred EEECCCC-Chhhhc---ccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCC-ccCCcCHHH---------------
Confidence 9999995 666553 23455999999886 5677765 445689999999996 555554432
Q ss_pred hhhhccccceEeecCCCCc
Q 045318 1197 FLKFYLKLTMLDINGCEKL 1215 (1388)
Q Consensus 1197 ~l~~l~~L~~L~l~~~~~L 1215 (1388)
+..+++|+.|++++++-.
T Consensus 493 -~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 493 -FDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp -GGGCTTCCEEECCSSCBC
T ss_pred -HhcCcccCEEEecCCCcc
Confidence 245778888998887643
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=6.8e-27 Score=293.37 Aligned_cols=98 Identities=24% Similarity=0.281 Sum_probs=49.7
Q ss_pred eeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 566 CLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
.+++|+|++|.++.++ ..|.++++|++|+|++|.+..+| ..|+++++|++|++++|......|..|+++++|++|+++
T Consensus 29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 108 (570)
T 2z63_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (570)
T ss_dssp SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccc
Confidence 3555555555555543 34555555555555555555552 345555555555555554333333455555555555555
Q ss_pred CCCCcccCcC-CCCCCCCCCCC
Q 045318 644 NVPLLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 644 ~~~~~~~~p~-~i~~L~~L~~L 664 (1388)
+|. +..+|. .++++++|++|
T Consensus 109 ~n~-l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 109 ETN-LASLENFPIGHLKTLKEL 129 (570)
T ss_dssp TSC-CCCSTTCSCTTCTTCCEE
T ss_pred ccc-cccCCCccccccccccEE
Confidence 554 222322 34444444444
No 23
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=6.9e-26 Score=282.12 Aligned_cols=178 Identities=17% Similarity=0.108 Sum_probs=91.1
Q ss_pred ccccEEeecCCccccccCCCCC-----CCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCC
Q 045318 853 PQLQELSLVRCSKLLGRLPEHL-----PSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNV 927 (1388)
Q Consensus 853 ~~L~~L~l~~C~~L~~~~p~~l-----~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~ 927 (1388)
++|++|++++ +.+++.+|..+ ++++.|.+.++..+.+.+ |.
T Consensus 276 ~~L~~L~l~~-n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~---p~------------------------------ 321 (562)
T 3a79_B 276 RPVEYLNIYN-LTITERIDREEFTYSETALKSLMIEHVKNQVFLF---SK------------------------------ 321 (562)
T ss_dssp SSEEEEEEEE-EEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSS---CH------------------------------
T ss_pred ccccEEEEec-cEeeccccchhhhcccccchheehhhcccceeec---Ch------------------------------
Confidence 5888999988 46776777665 677777766655443211 10
Q ss_pred CCchhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEe
Q 045318 928 PNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLEL 1007 (1388)
Q Consensus 928 ~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L 1007 (1388)
..+.. . ....+|++|++++|.+..+. ....+++|+.|+++++..-..++.. +..+++|++|++
T Consensus 322 ---~~~~~-~-~~~~~L~~L~l~~n~~~~~~-----~~~~l~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~L 384 (562)
T 3a79_B 322 ---EALYS-V-FAEMNIKMLSISDTPFIHMV-----CPPSPSSFTFLNFTQNVFTDSVFQG-------CSTLKRLQTLIL 384 (562)
T ss_dssp ---HHHHH-H-HHTCCCSEEEEESSCCCCCC-----CCSSCCCCCEEECCSSCCCTTTTTT-------CCSCSSCCEEEC
T ss_pred ---hhhhh-h-hccCcceEEEccCCCccccc-----CccCCCCceEEECCCCccccchhhh-------hcccCCCCEEEC
Confidence 00000 0 01145666666666554332 1245566666666664332222221 444566666666
Q ss_pred cCCCCcc--cccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecC
Q 045318 1008 RSCPSLV--KLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSC 1083 (1388)
Q Consensus 1008 ~~~~~~~--~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c 1083 (1388)
++|.+.. .+|..+..+++|++|++++|.....+|.... ..+++|+.|++++|.....++ ..++++|+.|++++|
T Consensus 385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~l~~~L~~L~L~~N 460 (562)
T 3a79_B 385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTC-AWAESILVLNLSSNMLTGSVF-RCLPPKVKVLDLHNN 460 (562)
T ss_dssp CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCC-CCCTTCCEEECCSSCCCGGGG-SSCCTTCSEEECCSS
T ss_pred CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhh-cCcccCCEEECCCCCCCcchh-hhhcCcCCEEECCCC
Confidence 6665544 3344556666666666666665443544322 234555666655544222221 122245555555554
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=8.9e-26 Score=279.05 Aligned_cols=439 Identities=16% Similarity=0.193 Sum_probs=251.0
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccchhcccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
++|+.| +++.|.+....+..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. .+++|+
T Consensus 21 ~~L~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 93 (520)
T 2z7x_B 21 QKTTIL-----NISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLK 93 (520)
T ss_dssp TTCSEE-----ECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCS
T ss_pred ccccEE-----ECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCcc
Confidence 678888 4667777766677888899999999999999877 67899999999999999999999887 899999
Q ss_pred eeecCCCcchh-hcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCC--CCCCceEeccC--CCCCcccccccccccce
Q 045318 615 TLLLESCSRLK-KLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCL--QTLPYFVVGKN--TGSQLRELKFLENLQVK 689 (1388)
Q Consensus 615 ~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~--~~~~~~~l~~L~~L~~~ 689 (1388)
+|++++|.... .+|..++++++|++|++++|.+.. ..++.+++| ++|. +..+.. .+..+..+..+.. + .
T Consensus 94 ~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~-l~~n~l~~~~~~~~~l~~l~~-~-~ 167 (520)
T 2z7x_B 94 HLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVL-LVLGETYGEKEDPEGLQDFNT-E-S 167 (520)
T ss_dssp EEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEE-EEECTTTTSSCCTTTTTTCCE-E-E
T ss_pred EEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEE-eeccccccccccccccccccc-c-e
Confidence 99999986554 467889999999999999988443 345666666 6663 233322 3333444544442 1 2
Q ss_pred eEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCC-----CCcc
Q 045318 690 LKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGAN-----FPIW 764 (1388)
Q Consensus 690 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~-----~p~~ 764 (1388)
+.+ .+..+...+......+..+++|+.|++++|..... .......+..+..+++|+.|++.++.... ++.+
T Consensus 168 l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~ 243 (520)
T 2z7x_B 168 LHI-VFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNK---CSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQL 243 (520)
T ss_dssp EEE-ECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTT---THHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred EEE-EeccCcchhhhhhhhhhcccceeeccccccccccc---cceeecchhhhccccchhhccccccccCHHHHHHHHHH
Confidence 222 23333333334445667788999999998752211 11122334467778889999987764321 1111
Q ss_pred cCCCCCCCccEEeeecCCCCCCCC-CC-----CCCCCcceeeccCCcCcEEeccc-cccCCCccCCCCcceeeccccccc
Q 045318 765 LGDSTFSNLELLRFENCAMCTSLP-SI-----GQLPALKHLSIIGMALVKSVGLQ-FYGNSGTVSFPSLETLFFGDMPEW 837 (1388)
Q Consensus 765 ~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~~f~~L~~L~l~~~~~l 837 (1388)
. ..++|++|++++|.+.+.+| .+ +.+++|+.+++++|.. .++.. +... ..-++|+.|.+.++.-.
T Consensus 244 ~---~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~---~~~~~L~~L~l~~n~l~ 315 (520)
T 2z7x_B 244 V---WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEI---FSNMNIKNFTVSGTRMV 315 (520)
T ss_dssp H---HTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHH---HHTCCCSEEEEESSCCC
T ss_pred h---hhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcc---cccCceeEEEcCCCccc
Confidence 1 13589999999998876666 45 7888888888887754 22211 1000 00023444444443311
Q ss_pred cccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcC
Q 045318 838 EDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLS 917 (1388)
Q Consensus 838 ~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 917 (1388)
... ....+++|++|++++ +++++.+|..+ ..+++|+.|+++++....+.
T Consensus 316 -~~~------~~~~l~~L~~L~Ls~-n~l~~~~~~~~------------------~~l~~L~~L~L~~N~l~~l~----- 364 (520)
T 2z7x_B 316 -HML------CPSKISPFLHLDFSN-NLLTDTVFENC------------------GHLTELETLILQMNQLKELS----- 364 (520)
T ss_dssp -CCC------CCSSCCCCCEEECCS-SCCCTTTTTTC------------------CCCSSCCEEECCSSCCCBHH-----
T ss_pred -ccc------chhhCCcccEEEeEC-CccChhhhhhh------------------ccCCCCCEEEccCCccCccc-----
Confidence 000 012345555555555 34443333222 12334444444443321100
Q ss_pred ccccccccCCCCchhcchhhhccCCCcceEEEeeeeeee-ecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhc
Q 045318 918 SLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTY-LWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQ 996 (1388)
Q Consensus 918 ~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 996 (1388)
.++ ..+..+++|++|++++|.+.. ++. ..+..+++|+.|++++|.....++..
T Consensus 365 --------------~~~-~~~~~l~~L~~L~Ls~N~l~~~l~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~-------- 418 (520)
T 2z7x_B 365 --------------KIA-EMTTQMKSLQQLDISQNSVSYDEKK---GDCSWTKSLLSLNMSSNILTDTIFRC-------- 418 (520)
T ss_dssp --------------HHH-HHHTTCTTCCEEECCSSCCBCCGGG---CSCCCCTTCCEEECCSSCCCGGGGGS--------
T ss_pred --------------cch-HHHhhCCCCCEEECCCCcCCccccc---chhccCccCCEEECcCCCCCcchhhh--------
Confidence 000 112445666666666666555 432 12445566666666655432222221
Q ss_pred CCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccC
Q 045318 997 GLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDC 1060 (1388)
Q Consensus 997 ~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c 1060 (1388)
..++|+.|++++|.+. .+|..+..+++|++|++++|+. +.+|.... ..+++|+.|+++++
T Consensus 419 -l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l-~~l~~~~~-~~l~~L~~L~l~~N 478 (520)
T 2z7x_B 419 -LPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL-KSVPDGIF-DRLTSLQKIWLHTN 478 (520)
T ss_dssp -CCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCC-CCCCTTTT-TTCTTCCEEECCSS
T ss_pred -hcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcC-CccCHHHh-ccCCcccEEECcCC
Confidence 1245666666666444 4555555566666666666643 24444311 23444555555544
No 25
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.94 E-value=2.6e-26 Score=287.56 Aligned_cols=275 Identities=23% Similarity=0.328 Sum_probs=193.9
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccC-CceEEEEeCCccCHHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-ESHF-DLKAWTCVSDDFDAIKV 257 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F-~~~~wv~~s~~~~~~~~ 257 (1388)
.+.||||+.++++|.+++.... +..++|+|+||||+||||||++++++.++ +.+| +.++|++++.. +...+
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~------~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~-~~~~~ 195 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK------GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQ-DKSGL 195 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST------TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESC-CHHHH
T ss_pred CCeecccHHHHHHHHHHHhccc------CCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCC-chHHH
Confidence 4569999999999999997532 45689999999999999999999998666 7889 58999999865 33344
Q ss_pred HHHH---HHHhcCC----CCCCCcHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC
Q 045318 258 TKAI---LRSICMH----TDADDDLNSLQVKLKDGLSR--KKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 258 ~~~i---~~~l~~~----~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
+..+ +..++.. .....+.+.+...++..+.+ +++||||||||+. ..+.. + ++|++||||||+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l~~----l---~~~~~ilvTsR~ 266 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVLKA----F---DSQCQILLTTRD 266 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHHHT----T---CSSCEEEEEESC
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH--HHHHH----h---cCCCeEEEECCC
Confidence 4433 3444421 12345567777778887765 7899999999874 33332 2 468999999999
Q ss_pred hhHHhhcCCCceEeC---CCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHH
Q 045318 329 QSVASMMGSVSAYEL---KKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDW 405 (1388)
Q Consensus 329 ~~v~~~~~~~~~~~l---~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w 405 (1388)
..++..+. ...+++ ++|+++++++||...++.. .....+.+.+|+++|+|+||||+.+|+.++.+.. .|
T Consensus 267 ~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~--~w 338 (591)
T 1z6t_A 267 KSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFPN--RW 338 (591)
T ss_dssp GGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTT--CH
T ss_pred cHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCch--hH
Confidence 99887643 234444 6899999999999988532 1222357899999999999999999999987643 57
Q ss_pred HHHHhhhccCC----CC----CCCchhHhh----------------------------HHHHHHHHHHcCCcCCCCCcch
Q 045318 406 RNVLNNKIWNL----PE----EGGDIMRAL----------------------------KNDVVLVWMAEGLLEPDTSEMK 449 (1388)
Q Consensus 406 ~~~~~~~~~~~----~~----~~~~~~~~l----------------------------~~~li~~wia~g~i~~~~~~~~ 449 (1388)
..+++...... .. ....+...+ ...++.+|.++
T Consensus 339 ~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~----------- 407 (591)
T 1z6t_A 339 EYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME----------- 407 (591)
T ss_dssp HHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-----------
T ss_pred HHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-----------
Confidence 76655322111 00 001111111 12233333211
Q ss_pred HHHHHHHHHHHHHhCCCCcccc--CCCcccccchHHHHHHHhc
Q 045318 450 MEELGRSYFRELHSRSFFQKSY--MDSRFIMHDLITDLAQWAA 490 (1388)
Q Consensus 450 ~~~~~~~~~~~L~~~~li~~~~--~~~~~~mHdli~d~a~~~~ 490 (1388)
.+.+..++++|++++|++... ...+|+||+++|++++...
T Consensus 408 -~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~ 449 (591)
T 1z6t_A 408 -TEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKN 449 (591)
T ss_dssp -HHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhh
Confidence 234678999999999998763 2347999999999998763
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=4e-25 Score=281.86 Aligned_cols=97 Identities=26% Similarity=0.373 Sum_probs=71.0
Q ss_pred eeeEEEeCCccccccc-cccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcc-hhhcccCCCCeeec
Q 045318 566 CLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLC-ADMGNLIKLRHLNN 642 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l 642 (1388)
.+++|||++|.|+.+| .+|.++++|++|+|++|.|+.+|. +|.+|++|++|+|++|. +..+| ..|.+|++|++|++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEEC
Confidence 5778888888888776 467888888888888888887754 57788888888888874 44444 45778888888888
Q ss_pred CCCCCcccCc-CCCCCCCCCCCC
Q 045318 643 YNVPLLEGMP-LRIGHLSCLQTL 664 (1388)
Q Consensus 643 ~~~~~~~~~p-~~i~~L~~L~~L 664 (1388)
++|. +..+| ..++++++|++|
T Consensus 132 s~N~-l~~l~~~~~~~L~~L~~L 153 (635)
T 4g8a_A 132 VETN-LASLENFPIGHLKTLKEL 153 (635)
T ss_dssp TTSC-CCCSTTCCCTTCTTCCEE
T ss_pred CCCc-CCCCChhhhhcCcccCee
Confidence 8887 34444 347777777766
No 27
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.93 E-value=7.6e-25 Score=279.26 Aligned_cols=508 Identities=18% Similarity=0.127 Sum_probs=229.4
Q ss_pred cCCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccC
Q 045318 509 FSKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDL 587 (1388)
Q Consensus 509 ~~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l 587 (1388)
++..++++.+..+.+..+. ..+|.++++|++| +++.|.+....+..|..+++|++|+|++|.|+.+| ..|.++
T Consensus 50 lp~~~~~LdLs~N~i~~l~-~~~f~~l~~L~~L-----~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLG-SYSFFSFPELQVL-----DLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEE-----ECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCcCCCEEEeeCCCCCCCC-HHHHhCCCCCCEE-----ECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 3445555555544433322 1235555556655 34445444433444555566666666666665555 345556
Q ss_pred cccceeeccCcccccccc-chhcccccceeecCCCcchh-hcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCC
Q 045318 588 KHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLK-KLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLP 665 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 665 (1388)
.+|++|+|++|.++.+|. .|+++++|++|++++|.... .+|..++.+++|++|++++|.+....|..+..+.+++.+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 666666666666655543 35556666666666553322 2345555566666666665553333333444444333321
Q ss_pred ceE-eccCC--CCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccC
Q 045318 666 YFV-VGKNT--GSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDML 742 (1388)
Q Consensus 666 ~~~-~~~~~--~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L 742 (1388)
... ...+. .........+ .+....+..+..........+..+..++...+..+........... ....+
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~-----~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~---~~~~~ 275 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEI-----RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF---DKSAL 275 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTC-----EEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCC---CTTTT
T ss_pred hhhhcccCcccccCcccccch-----hhhhhhhhcccccccccchhhcCCcccccccccccccccccccccc---ccccc
Confidence 110 00000 0000000000 0111112222222233334444555555555554433221100000 00111
Q ss_pred CCCCCcceEEEeccCCCCC----CcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCC
Q 045318 743 RPHENLKQLAIRGYGGANF----PIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNS 818 (1388)
Q Consensus 743 ~~~~~L~~L~l~~~~~~~~----p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 818 (1388)
.....+....+........ +..+. .+.+++.+.+.++.... ++.+.....|+.|++.+|.....
T Consensus 276 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~--~~~~l~~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~--------- 343 (635)
T 4g8a_A 276 EGLCNLTIEEFRLAYLDYYLDGIIDLFN--CLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQF--------- 343 (635)
T ss_dssp GGGGGSEEEEEEEECCCSCEEECTTTTG--GGTTCSEEEEESCEEEE-CGGGGSCCCCSEEEEESCEESSC---------
T ss_pred ccccchhhhhhhhhhhcccccchhhhhh--hhccccccccccccccc-ccccccchhhhhhhcccccccCc---------
Confidence 2222333333332221111 11111 23455556555554322 22233445566666655532110
Q ss_pred CccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccc--cCC---CCCCCccEEEEecccCcc--cc
Q 045318 819 GTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLG--RLP---EHLPSLKTLVIQECEQLL--VT 891 (1388)
Q Consensus 819 ~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~--~~p---~~l~~L~~L~i~~~~~~~--~~ 891 (1388)
....++.|+.+.+.....-.. .....+++|+.|++++ +.+.. ..+ ....+|+.+.+..+.... ..
T Consensus 344 ~~~~l~~L~~l~l~~n~~~~~-------~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~ 415 (635)
T 4g8a_A 344 PTLKLKSLKRLTFTSNKGGNA-------FSEVDLPSLEFLDLSR-NGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSN 415 (635)
T ss_dssp CCCBCTTCCEEEEESCCSCCB-------CCCCBCTTCCEEECCS-SCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSC
T ss_pred CcccchhhhhcccccccCCCC-------cccccccccccchhhc-cccccccccccchhhhhhhhhhhcccccccccccc
Confidence 001244455544443321100 0122356666666665 33321 111 123344444443332211 11
Q ss_pred CCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCc
Q 045318 892 VPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSL 971 (1388)
Q Consensus 892 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L 971 (1388)
+..+++|+.+++..+.... ..+...+..+++++.++++.|.+..+.. ..+..+++|
T Consensus 416 ~~~l~~L~~l~l~~~~~~~---------------------~~~~~~~~~l~~l~~l~ls~n~l~~~~~---~~~~~~~~L 471 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQ---------------------MSEFSVFLSLRNLIYLDISHTHTRVAFN---GIFNGLSSL 471 (635)
T ss_dssp CTTCTTCCEEECTTSEEES---------------------TTSSCTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTC
T ss_pred ccccccccchhhhhccccc---------------------cccccccccccccccccccccccccccc---cccccchhh
Confidence 2233444444443332211 0111223456677777777777666543 346667777
Q ss_pred cEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCC
Q 045318 972 HKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAP 1051 (1388)
Q Consensus 972 ~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~ 1051 (1388)
+.|+++++.....+.... +..+++|++|+|++|.+.+..|..|.++++|++|+|++|+.....|..+ ..+++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~------~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~--~~l~~ 543 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDI------FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY--KCLNS 543 (635)
T ss_dssp CEEECTTCEEGGGEECSC------CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGG--TTCTT
T ss_pred hhhhhhhcccccccCchh------hhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHH--hCCCC
Confidence 777777765554433222 5556777777777777666667777777777777777776444444444 34666
Q ss_pred ccceeeccCCCccccccc---cCCCCccEEEeecC
Q 045318 1052 LESLNVVDCNSLTYIARV---QLPPSLKLLHIQSC 1083 (1388)
Q Consensus 1052 L~~L~l~~c~~l~~~~~~---~~~~sL~~L~l~~c 1083 (1388)
|+.|+++++. ++.+++. ..+++|+.|+++++
T Consensus 544 L~~L~Ls~N~-l~~~~~~~l~~l~~~L~~L~L~~N 577 (635)
T 4g8a_A 544 LQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 577 (635)
T ss_dssp CCEEECTTSC-CCBCCSSCTTCCCTTCCEEECTTC
T ss_pred CCEEECCCCc-CCCCCHHHHHhhhCcCCEEEeeCC
Confidence 7777776654 3333222 12345566655543
No 28
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.92 E-value=2.3e-24 Score=257.95 Aligned_cols=382 Identities=21% Similarity=0.193 Sum_probs=215.5
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCcccc-ccccchhccccc-------------ceeecCCCcchhhcc
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIE-TLPESVNTLYNL-------------HTLLLESCSRLKKLC 628 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L-------------~~L~L~~~~~~~~lp 628 (1388)
+.++|++|++++|.+..+|.+++++++|++|++++|.+. .+|.+++++++| ++|++++|. +..+|
T Consensus 9 ~~~~L~~L~l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~-l~~lp 87 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLG-LSSLP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSC-CSCCC
T ss_pred ccccchhhhcccCchhhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCc-cccCC
Confidence 357789999999999999999999999999999999887 789989888876 777777763 44455
Q ss_pred hhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhh
Q 045318 629 ADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAE 708 (1388)
Q Consensus 629 ~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~ 708 (1388)
. -.++|++|++++|. ...+|..+ ++|++|.. ..+...+
T Consensus 88 ~---~~~~L~~L~l~~n~-l~~lp~~~---~~L~~L~l-----------------------------~~n~l~~------ 125 (454)
T 1jl5_A 88 E---LPPHLESLVASCNS-LTELPELP---QSLKSLLV-----------------------------DNNNLKA------ 125 (454)
T ss_dssp S---CCTTCSEEECCSSC-CSSCCCCC---TTCCEEEC-----------------------------CSSCCSC------
T ss_pred C---CcCCCCEEEccCCc-CCcccccc---CCCcEEEC-----------------------------CCCccCc------
Confidence 4 23677777777776 33455432 34444411 1111000
Q ss_pred cCC-CCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCC
Q 045318 709 LNG-KRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSL 787 (1388)
Q Consensus 709 l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 787 (1388)
+.. .++|+.|++++|.+.+. ..+..+++|+.|+++++....+|.+ .++|++|++++|.+.. +
T Consensus 126 l~~~~~~L~~L~L~~n~l~~l-----------p~~~~l~~L~~L~l~~N~l~~lp~~-----~~~L~~L~L~~n~l~~-l 188 (454)
T 1jl5_A 126 LSDLPPLLEYLGVSNNQLEKL-----------PELQNSSFLKIIDVDNNSLKKLPDL-----PPSLEFIAAGNNQLEE-L 188 (454)
T ss_dssp CCSCCTTCCEEECCSSCCSSC-----------CCCTTCTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSS-C
T ss_pred ccCCCCCCCEEECcCCCCCCC-----------cccCCCCCCCEEECCCCcCcccCCC-----cccccEEECcCCcCCc-C
Confidence 001 15778888887776541 1256677888888888877777754 3478888888887665 5
Q ss_pred CCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCcccc
Q 045318 788 PSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLL 867 (1388)
Q Consensus 788 ~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~ 867 (1388)
|.++.+++|++|++++|.... ++. ..++|+.|.+.++. +..+. .++.+++|++|++++ ++++
T Consensus 189 ~~~~~l~~L~~L~l~~N~l~~-l~~---------~~~~L~~L~l~~n~-l~~lp------~~~~l~~L~~L~l~~-N~l~ 250 (454)
T 1jl5_A 189 PELQNLPFLTAIYADNNSLKK-LPD---------LPLSLESIVAGNNI-LEELP------ELQNLPFLTTIYADN-NLLK 250 (454)
T ss_dssp CCCTTCTTCCEEECCSSCCSS-CCC---------CCTTCCEEECCSSC-CSSCC------CCTTCTTCCEEECCS-SCCS
T ss_pred ccccCCCCCCEEECCCCcCCc-CCC---------CcCcccEEECcCCc-CCccc------ccCCCCCCCEEECCC-CcCC
Confidence 678888888888888875332 211 13578888887763 22221 356688899999988 5776
Q ss_pred ccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceE
Q 045318 868 GRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEEL 947 (1388)
Q Consensus 868 ~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L 947 (1388)
.+|..+++|+.|.+.+|.-..+ ...+++|+.|+++++....+. ...++|+.|
T Consensus 251 -~l~~~~~~L~~L~l~~N~l~~l-~~~~~~L~~L~ls~N~l~~l~--------------------------~~~~~L~~L 302 (454)
T 1jl5_A 251 -TLPDLPPSLEALNVRDNYLTDL-PELPQSLTFLDVSENIFSGLS--------------------------ELPPNLYYL 302 (454)
T ss_dssp -SCCSCCTTCCEEECCSSCCSCC-CCCCTTCCEEECCSSCCSEES--------------------------CCCTTCCEE
T ss_pred -cccccccccCEEECCCCccccc-CcccCcCCEEECcCCccCccc--------------------------CcCCcCCEE
Confidence 5777778888888877654322 123467778877776532210 112578888
Q ss_pred EEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccc
Q 045318 948 AICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLR 1027 (1388)
Q Consensus 948 ~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~ 1027 (1388)
++++|.++.++. ..++|+.|+++++. +..++. .+++|++|++++|... .+|. .+++|+
T Consensus 303 ~l~~N~l~~i~~-------~~~~L~~L~Ls~N~-l~~lp~----------~~~~L~~L~L~~N~l~-~lp~---~l~~L~ 360 (454)
T 1jl5_A 303 NASSNEIRSLCD-------LPPSLEELNVSNNK-LIELPA----------LPPRLERLIASFNHLA-EVPE---LPQNLK 360 (454)
T ss_dssp ECCSSCCSEECC-------CCTTCCEEECCSSC-CSCCCC----------CCTTCCEEECCSSCCS-CCCC---CCTTCC
T ss_pred ECcCCcCCcccC-------CcCcCCEEECCCCc-cccccc----------cCCcCCEEECCCCccc-cccc---hhhhcc
Confidence 888888776532 12578888888843 444432 2578888888888655 4665 378888
Q ss_pred eEEEccCCCCc--cChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCc
Q 045318 1028 QLKISECHSMK--SLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1028 ~L~l~~~~~l~--~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~ 1084 (1388)
+|++++|+..+ .+|..+. .|. .+.....+|. .+++|+.|+++++.
T Consensus 361 ~L~L~~N~l~~l~~ip~~l~--------~L~--~n~~~~~i~~--~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 361 QLHVEYNPLREFPDIPESVE--------DLR--MNSHLAEVPE--LPQNLKQLHVETNP 407 (454)
T ss_dssp EEECCSSCCSSCCCCCTTCC--------EEE--CCC-----------------------
T ss_pred EEECCCCCCCcCCCChHHHH--------hhh--hccccccccc--ccCcCCEEECCCCc
Confidence 89998887665 4554432 222 2222333332 34677777777653
No 29
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.92 E-value=4.6e-24 Score=265.64 Aligned_cols=438 Identities=14% Similarity=0.154 Sum_probs=249.6
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccchhcccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
++|++| +++.|.+....+..|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.++.+|.. .+++|+
T Consensus 52 ~~L~~L-----~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~ 124 (562)
T 3a79_B 52 PRTKAL-----SLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124 (562)
T ss_dssp TTCCEE-----ECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCS
T ss_pred CCcCEE-----ECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCC
Confidence 688888 4677777776677889999999999999999987 57899999999999999999999987 899999
Q ss_pred eeecCCCcchh-hcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCC--CCCCceEeccC--CCCCcccccccccccce
Q 045318 615 TLLLESCSRLK-KLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCL--QTLPYFVVGKN--TGSQLRELKFLENLQVK 689 (1388)
Q Consensus 615 ~L~L~~~~~~~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~~~~~~~--~~~~~~~l~~L~~L~~~ 689 (1388)
+|++++|.... ..|..++++++|++|++++|.+.. ..++.+++| ++|. +..+.. .+.....+..+.. + .
T Consensus 125 ~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~-L~~n~l~~~~~~~~~l~~l~~-~-~ 198 (562)
T 3a79_B 125 HLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCIL-LDLVSYHIKGGETESLQIPNT-T-V 198 (562)
T ss_dssp EEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEE-EEESSCCCCSSSCCEEEECCE-E-E
T ss_pred EEECCCCCccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEE-eecccccccccCcccccccCc-c-e
Confidence 99999986544 245789999999999999988543 245555666 6552 233322 3334445554432 1 2
Q ss_pred eEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC-----CCCcc
Q 045318 690 LKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGA-----NFPIW 764 (1388)
Q Consensus 690 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~-----~~p~~ 764 (1388)
+.+ .+..+..........+..+++|+.+++++|... .......+..+...++|+.|.+.++... .++.+
T Consensus 199 l~l-~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~ 272 (562)
T 3a79_B 199 LHL-VFHPNSLFSVQVNMSVNALGHLQLSNIKLNDEN-----CQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF 272 (562)
T ss_dssp EEE-EECSSSCCCCCCEEEESSEEEEEEEEEECCSTT-----HHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH
T ss_pred EEE-EecCccchhhhhhhcccccceEEEecccccccc-----cchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh
Confidence 222 233333333333445667788899999877421 1111223344566677777777665432 12222
Q ss_pred cCCCCCCCccEEeeecCCCCCCCC-CC-----CCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeecccccccc
Q 045318 765 LGDSTFSNLELLRFENCAMCTSLP-SI-----GQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWE 838 (1388)
Q Consensus 765 ~~~~~l~~L~~L~L~~~~~~~~l~-~l-----~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~ 838 (1388)
+. .++|++|++++|.+.+.+| .+ +.++.|+.+++..+.. .++...... ....++|+.|.+.++.-.
T Consensus 273 ~~---~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~--~~~~~~L~~L~l~~n~~~- 344 (562)
T 3a79_B 273 FW---PRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYS--VFAEMNIKMLSISDTPFI- 344 (562)
T ss_dssp HT---TSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHH--HHHTCCCSEEEEESSCCC-
T ss_pred hh---cccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhh--hhccCcceEEEccCCCcc-
Confidence 22 3589999999988776666 33 4445454444444321 111100000 000123444444443210
Q ss_pred ccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCc
Q 045318 839 DWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSS 918 (1388)
Q Consensus 839 ~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 918 (1388)
... ....+++|++|++++ +.+++..|..+ ..+++|+.|+++++....+..
T Consensus 345 ~~~------~~~~l~~L~~L~l~~-n~l~~~~~~~~------------------~~l~~L~~L~L~~N~l~~~~~----- 394 (562)
T 3a79_B 345 HMV------CPPSPSSFTFLNFTQ-NVFTDSVFQGC------------------STLKRLQTLILQRNGLKNFFK----- 394 (562)
T ss_dssp CCC------CCSSCCCCCEEECCS-SCCCTTTTTTC------------------CSCSSCCEEECCSSCCCBTTH-----
T ss_pred ccc------CccCCCCceEEECCC-Cccccchhhhh------------------cccCCCCEEECCCCCcCCccc-----
Confidence 000 012345555555555 34443333222 223444444444433211000
Q ss_pred cccccccCCCCchhcchhhhccCCCcceEEEeeeeeee-ecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcC
Q 045318 919 LNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTY-LWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQG 997 (1388)
Q Consensus 919 l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 997 (1388)
. ...+..+++|++|++++|.++. ++. ..+..+++|+.|++++|.....++..
T Consensus 395 --------------~-~~~~~~l~~L~~L~l~~N~l~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~--------- 447 (562)
T 3a79_B 395 --------------V-ALMTKNMSSLETLDVSLNSLNSHAYD---RTCAWAESILVLNLSSNMLTGSVFRC--------- 447 (562)
T ss_dssp --------------H-HHTTTTCTTCCEEECTTSCCBSCCSS---CCCCCCTTCCEEECCSSCCCGGGGSS---------
T ss_pred --------------c-hhhhcCCCCCCEEECCCCcCCCccCh---hhhcCcccCCEEECCCCCCCcchhhh---------
Confidence 0 0112456667777777776665 433 23556667777777765432222211
Q ss_pred CCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhh-hccCCCCCccceeeccCC
Q 045318 998 LPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEA-LMHNDNAPLESLNVVDCN 1061 (1388)
Q Consensus 998 ~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~-~~~~~l~~L~~L~l~~c~ 1061 (1388)
..++|+.|++++|.+. .+|..+..+++|++|++++|+.. .+|.. + ..+++|+.|++++++
T Consensus 448 l~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~--~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 448 LPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVF--DRLTSLQYIWLHDNP 508 (562)
T ss_dssp CCTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTST--TTCTTCCCEECCSCC
T ss_pred hcCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHH--hcCCCCCEEEecCCC
Confidence 1146777777776443 56655556777777777776533 55554 3 345566666666554
No 30
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=245.56 Aligned_cols=82 Identities=18% Similarity=0.252 Sum_probs=38.6
Q ss_pred hccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 561 LLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
+..+++|++|+|++|.++.+|. ++++.+|++|++++|.+..+|. ++++++|++|++++|. +..+|. +.++++|++|
T Consensus 64 ~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEE
T ss_pred hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC-CCCChH-HcCCCCCCEE
Confidence 3444445555555555444443 4445555555555554444443 4455555555554442 222332 4445555555
Q ss_pred ecCCCC
Q 045318 641 NNYNVP 646 (1388)
Q Consensus 641 ~l~~~~ 646 (1388)
++++|.
T Consensus 140 ~l~~n~ 145 (466)
T 1o6v_A 140 ELSSNT 145 (466)
T ss_dssp EEEEEE
T ss_pred ECCCCc
Confidence 554444
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=3.5e-23 Score=247.74 Aligned_cols=252 Identities=22% Similarity=0.205 Sum_probs=121.1
Q ss_pred CCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCC
Q 045318 714 NLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQL 793 (1388)
Q Consensus 714 ~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l 793 (1388)
+|+.|++++|.+.+. ..+..+++|+.|+++++....+|.. .++|++|++++|.+. .+|.++.+
T Consensus 174 ~L~~L~L~~n~l~~l-----------~~~~~l~~L~~L~l~~N~l~~l~~~-----~~~L~~L~l~~n~l~-~lp~~~~l 236 (454)
T 1jl5_A 174 SLEFIAAGNNQLEEL-----------PELQNLPFLTAIYADNNSLKKLPDL-----PLSLESIVAGNNILE-ELPELQNL 236 (454)
T ss_dssp TCCEEECCSSCCSSC-----------CCCTTCTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCS-SCCCCTTC
T ss_pred cccEEECcCCcCCcC-----------ccccCCCCCCEEECCCCcCCcCCCC-----cCcccEEECcCCcCC-cccccCCC
Confidence 555555555554431 1234455555666655555544432 235566666665544 34455556
Q ss_pred CCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCC
Q 045318 794 PALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEH 873 (1388)
Q Consensus 794 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~ 873 (1388)
++|++|++++|.... ++ ..+++|+.|++++ +.++ .+|..
T Consensus 237 ~~L~~L~l~~N~l~~-l~--------------------------------------~~~~~L~~L~l~~-N~l~-~l~~~ 275 (454)
T 1jl5_A 237 PFLTTIYADNNLLKT-LP--------------------------------------DLPPSLEALNVRD-NYLT-DLPEL 275 (454)
T ss_dssp TTCCEEECCSSCCSS-CC--------------------------------------SCCTTCCEEECCS-SCCS-CCCCC
T ss_pred CCCCEEECCCCcCCc-cc--------------------------------------ccccccCEEECCC-Cccc-ccCcc
Confidence 666666665553211 00 1135677777777 4565 46666
Q ss_pred CCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeee
Q 045318 874 LPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTK 953 (1388)
Q Consensus 874 l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~ 953 (1388)
+++|+.|.+.+|.-..+. ...++|+.|+++++....+. ...++|++|++++|+
T Consensus 276 ~~~L~~L~ls~N~l~~l~-~~~~~L~~L~l~~N~l~~i~--------------------------~~~~~L~~L~Ls~N~ 328 (454)
T 1jl5_A 276 PQSLTFLDVSENIFSGLS-ELPPNLYYLNASSNEIRSLC--------------------------DLPPSLEELNVSNNK 328 (454)
T ss_dssp CTTCCEEECCSSCCSEES-CCCTTCCEEECCSSCCSEEC--------------------------CCCTTCCEEECCSSC
T ss_pred cCcCCEEECcCCccCccc-CcCCcCCEEECcCCcCCccc--------------------------CCcCcCCEEECCCCc
Confidence 667777777665432211 22357777777766432100 112478899999998
Q ss_pred eeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcc--cccccccCCCccceEEE
Q 045318 954 VTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLV--KLPQTLLSLSSLRQLKI 1031 (1388)
Q Consensus 954 l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~--~~p~~~~~l~~L~~L~l 1031 (1388)
++.++. .+++|+.|++++| .++.++. .+++|++|++++|...+ .+|..+..+
T Consensus 329 l~~lp~-------~~~~L~~L~L~~N-~l~~lp~----------~l~~L~~L~L~~N~l~~l~~ip~~l~~L-------- 382 (454)
T 1jl5_A 329 LIELPA-------LPPRLERLIASFN-HLAEVPE----------LPQNLKQLHVEYNPLREFPDIPESVEDL-------- 382 (454)
T ss_dssp CSCCCC-------CCTTCCEEECCSS-CCSCCCC----------CCTTCCEEECCSSCCSSCCCCCTTCCEE--------
T ss_pred cccccc-------cCCcCCEEECCCC-ccccccc----------hhhhccEEECCCCCCCcCCCChHHHHhh--------
Confidence 887643 2588999999885 4555543 26789999999998777 566654432
Q ss_pred ccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCc
Q 045318 1032 SECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCH 1084 (1388)
Q Consensus 1032 ~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~ 1084 (1388)
+.|.....+|.. +++|+.|++++++ +..++ .+|++++.|.+.+|.
T Consensus 383 ~~n~~~~~i~~~-----~~~L~~L~ls~N~-l~~~~--~iP~sl~~L~~~~~~ 427 (454)
T 1jl5_A 383 RMNSHLAEVPEL-----PQNLKQLHVETNP-LREFP--DIPESVEDLRMNSER 427 (454)
T ss_dssp ECCC-------------------------------------------------
T ss_pred hhcccccccccc-----cCcCCEEECCCCc-CCccc--cchhhHhheeCcCcc
Confidence 334445555542 3557777777654 33222 346677777777664
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=7.4e-23 Score=248.40 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=50.9
Q ss_pred ceeeEEEeCCcccccc-ccccccCcccceeeccCcccc-cc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIE-TL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~-~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
++|++|+|++|.++.+ |..++++++|++|+|++|.+. .+ |..+.++++|++|+|++|......|..++++++|++|+
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 109 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence 4566666666666655 455666666666666666654 34 44566666666666666654444455666666666666
Q ss_pred cCCCCC
Q 045318 642 NYNVPL 647 (1388)
Q Consensus 642 l~~~~~ 647 (1388)
+++|.+
T Consensus 110 L~~n~l 115 (455)
T 3v47_A 110 LTQCNL 115 (455)
T ss_dssp CTTSCC
T ss_pred CCCCCC
Confidence 666653
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.90 E-value=1e-23 Score=252.60 Aligned_cols=358 Identities=16% Similarity=0.131 Sum_probs=206.6
Q ss_pred cccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcc
Q 045318 531 AISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTL 610 (1388)
Q Consensus 531 ~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 610 (1388)
.+.++++|++|. ++.+.+.+. | .+..+++|++|+|++|.++.+| ++.+++|++|++++|.++.+| ++++
T Consensus 37 ~~~~l~~L~~L~-----Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l 105 (457)
T 3bz5_A 37 SEEQLATLTSLD-----CHNSSITDM-T-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPL 105 (457)
T ss_dssp EHHHHTTCCEEE-----CCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTC
T ss_pred ChhHcCCCCEEE-----ccCCCcccC-h-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCC
Confidence 345566666663 444444432 2 4566677777777777776665 666777777777777776664 6677
Q ss_pred cccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCccccccccccccee
Q 045318 611 YNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKL 690 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 690 (1388)
++|++|++++|. +..+| ++.+++|++|++++|. +..++ ++.+++|++|..
T Consensus 106 ~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l------------------------ 155 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNT-LTEID--VSHNTQLTELDC------------------------ 155 (457)
T ss_dssp TTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSC-CSCCC--CTTCTTCCEEEC------------------------
T ss_pred CcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCc-cceec--cccCCcCCEEEC------------------------
Confidence 777777777763 33344 6677777777777766 33332 455555554411
Q ss_pred EeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCC
Q 045318 691 KISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTF 770 (1388)
Q Consensus 691 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l 770 (1388)
..+...+.. .+..+++|+.|++++|.+.+. . +..+++|+.|+++++....++ +. .+
T Consensus 156 -----~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~l-----------~-l~~l~~L~~L~l~~N~l~~~~--l~--~l 211 (457)
T 3bz5_A 156 -----HLNKKITKL---DVTPQTQLTTLDCSFNKITEL-----------D-VSQNKLLNRLNCDTNNITKLD--LN--QN 211 (457)
T ss_dssp -----TTCSCCCCC---CCTTCTTCCEEECCSSCCCCC-----------C-CTTCTTCCEEECCSSCCSCCC--CT--TC
T ss_pred -----CCCCccccc---ccccCCcCCEEECCCCcccee-----------c-cccCCCCCEEECcCCcCCeec--cc--cC
Confidence 111101111 245567778888877776552 1 445677778888777766653 32 36
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCccc
Q 045318 771 SNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVE 850 (1388)
Q Consensus 771 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 850 (1388)
++|++|++++|.+.. +| ++.+++|+.|++++|.... ++ ...+++|+.|.+..
T Consensus 212 ~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N~l~~-~~--------~~~l~~L~~L~l~~----------------- 263 (457)
T 3bz5_A 212 IQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVNPLTE-LD--------VSTLSKLTTLHCIQ----------------- 263 (457)
T ss_dssp TTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSSCCSC-CC--------CTTCTTCCEEECTT-----------------
T ss_pred CCCCEEECcCCcccc-cC-ccccCCCCEEEeeCCcCCC-cC--------HHHCCCCCEEeccC-----------------
Confidence 788888888887766 45 7777888888887775332 11 12255555554321
Q ss_pred ccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCc
Q 045318 851 VFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQ 930 (1388)
Q Consensus 851 ~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~ 930 (1388)
.+|+.|++++|..+ +.+|. ..+++|+.|++++|..+.......+.++.+.
T Consensus 264 --n~L~~L~l~~n~~~-~~~~~--------------------~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~------- 313 (457)
T 3bz5_A 264 --TDLLEIDLTHNTQL-IYFQA--------------------EGCRKIKELDVTHNTQLYLLDCQAAGITELD------- 313 (457)
T ss_dssp --CCCSCCCCTTCTTC-CEEEC--------------------TTCTTCCCCCCTTCTTCCEEECTTCCCSCCC-------
T ss_pred --CCCCEEECCCCccC-Ccccc--------------------cccccCCEEECCCCcccceeccCCCcceEec-------
Confidence 34555566654322 23321 1123333334444333222222222222211
Q ss_pred hhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCC
Q 045318 931 VFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSC 1010 (1388)
Q Consensus 931 ~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~ 1010 (1388)
...+++|++|++++|+++.++ +..+++|+.|+++++. ++ .+++|..|++++|
T Consensus 314 -------l~~~~~L~~L~L~~N~l~~l~------l~~l~~L~~L~l~~N~-l~--------------~l~~L~~L~l~~n 365 (457)
T 3bz5_A 314 -------LSQNPKLVYLYLNNTELTELD------VSHNTKLKSLSCVNAH-IQ--------------DFSSVGKIPALNN 365 (457)
T ss_dssp -------CTTCTTCCEEECTTCCCSCCC------CTTCTTCSEEECCSSC-CC--------------BCTTGGGSSGGGT
T ss_pred -------hhhcccCCEEECCCCcccccc------cccCCcCcEEECCCCC-CC--------------CccccccccccCC
Confidence 134577888888888887752 6778888888888743 22 2445666777776
Q ss_pred CCcccccccccCCCccceEEEccCCCCccChhhh
Q 045318 1011 PSLVKLPQTLLSLSSLRQLKISECHSMKSLPEAL 1044 (1388)
Q Consensus 1011 ~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~ 1044 (1388)
...+. ..+..|..+++++|+....+|..+
T Consensus 366 ~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 366 NFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp SEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred cEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 55543 235667778888888777777654
No 34
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=3.8e-23 Score=250.96 Aligned_cols=124 Identities=21% Similarity=0.195 Sum_probs=87.1
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccc-ccc-cccccCcccceeeccCcccccc-ccchhcccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNIC-KIS-NTIGDLKHLRHLDLSETLIETL-PESVNTLYN 612 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~-~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~ 612 (1388)
++|++| +++.|.+....+..|..+++|++|+|++|.+. .+| ..|.++++|++|+|++|.+..+ |..++++++
T Consensus 30 ~~l~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 30 AHVNYV-----DLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp TTCCEE-----ECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CccCEE-----EecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 567777 45666666655667778888888888888775 553 5678888888888888888766 677888888
Q ss_pred cceeecCCCcchhhcchh--hcccCCCCeeecCCCCCcccCcCC-CCCCCCCCCC
Q 045318 613 LHTLLLESCSRLKKLCAD--MGNLIKLRHLNNYNVPLLEGMPLR-IGHLSCLQTL 664 (1388)
Q Consensus 613 L~~L~L~~~~~~~~lp~~--i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L 664 (1388)
|++|++++|......|.. ++.+++|++|++++|.+....|.. ++.+++|++|
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L 159 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVL 159 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEE
Confidence 888888887655445544 778888888888888744333433 4555555544
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.88 E-value=2.9e-22 Score=242.87 Aligned_cols=346 Identities=18% Similarity=0.257 Sum_probs=217.2
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.++.|+.|+++++.+..+|. +..+++|++|+|++|.+..+|. ++++++|++|++++|.. ..++. ++++++|++|++
T Consensus 44 ~l~~l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~L 119 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI-ADITP-LANLTNLTGLTL 119 (466)
T ss_dssp HHHTCCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG-GTTCTTCCEEEC
T ss_pred HhccccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCcc-ccChh-hcCCCCCCEEEC
Confidence 35678899999999988874 8889999999999999998887 89999999999999854 44554 899999999999
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|. +..++. ++.+++|++|......- . .+. .+..+++|+.|+++
T Consensus 120 ~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~--~~~-----------------------------~~~~l~~L~~L~l~- 164 (466)
T 1o6v_A 120 FNNQ-ITDIDP-LKNLTNLNRLELSSNTI-S--DIS-----------------------------ALSGLTSLQQLSFG- 164 (466)
T ss_dssp CSSC-CCCCGG-GTTCTTCSEEEEEEEEE-C--CCG-----------------------------GGTTCTTCSEEEEE-
T ss_pred CCCC-CCCChH-HcCCCCCCEEECCCCcc-C--CCh-----------------------------hhccCCcccEeecC-
Confidence 9987 455554 77777777773322211 0 011 23445555555554
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeecc
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSII 802 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 802 (1388)
+.... +..+..+++|+.|+++++....++. +. .+++|++|++++|.+....| ++.+++|+.|+++
T Consensus 165 ~~~~~-----------~~~~~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~ 229 (466)
T 1o6v_A 165 NQVTD-----------LKPLANLTTLERLDISSNKVSDISV-LA--KLTNLESLIATNNQISDITP-LGILTNLDELSLN 229 (466)
T ss_dssp ESCCC-----------CGGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECC
T ss_pred CcccC-----------chhhccCCCCCEEECcCCcCCCChh-hc--cCCCCCEEEecCCccccccc-ccccCCCCEEECC
Confidence 22211 1114445556666666555544432 22 25666666666665544333 5556666666666
Q ss_pred CCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEE
Q 045318 803 GMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVI 882 (1388)
Q Consensus 803 ~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i 882 (1388)
+|.... ++ ....+++|+.|.+.++.- .... .+..+++|++|++++ +.+.+ ++
T Consensus 230 ~n~l~~-~~-------~l~~l~~L~~L~l~~n~l-~~~~------~~~~l~~L~~L~l~~-n~l~~-~~----------- 281 (466)
T 1o6v_A 230 GNQLKD-IG-------TLASLTNLTDLDLANNQI-SNLA------PLSGLTKLTELKLGA-NQISN-IS----------- 281 (466)
T ss_dssp SSCCCC-CG-------GGGGCTTCSEEECCSSCC-CCCG------GGTTCTTCSEEECCS-SCCCC-CG-----------
T ss_pred CCCccc-ch-------hhhcCCCCCEEECCCCcc-ccch------hhhcCCCCCEEECCC-CccCc-cc-----------
Confidence 653221 10 011234444444443321 1110 133456666666666 34432 11
Q ss_pred ecccCccccCCCCCcceEEEEcCCCCeeecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCC
Q 045318 883 QECEQLLVTVPSIPTLCKLEIGGCKKVVWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGS 962 (1388)
Q Consensus 883 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~ 962 (1388)
.+..+++|+.|+++++...... ....+++|+.|++++|.++.+..
T Consensus 282 --------~~~~l~~L~~L~L~~n~l~~~~------------------------~~~~l~~L~~L~L~~n~l~~~~~--- 326 (466)
T 1o6v_A 282 --------PLAGLTALTNLELNENQLEDIS------------------------PISNLKNLTYLTLYFNNISDISP--- 326 (466)
T ss_dssp --------GGTTCTTCSEEECCSSCCSCCG------------------------GGGGCTTCSEEECCSSCCSCCGG---
T ss_pred --------cccCCCccCeEEcCCCcccCch------------------------hhcCCCCCCEEECcCCcCCCchh---
Confidence 1223455566666555322100 02567889999999998887643
Q ss_pred ccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCc
Q 045318 963 GLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMK 1038 (1388)
Q Consensus 963 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~ 1038 (1388)
+..+++|+.|++++|. +..++. +..+++|+.|++++|...+..| +..+++|+.|++++|+...
T Consensus 327 --~~~l~~L~~L~l~~n~-l~~~~~--------l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 327 --VSSLTKLQRLFFYNNK-VSDVSS--------LANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp --GGGCTTCCEEECCSSC-CCCCGG--------GTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred --hccCccCCEeECCCCc-cCCchh--------hccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 6788999999999874 444432 5568899999999998887777 7789999999999997544
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=4.6e-22 Score=238.20 Aligned_cols=355 Identities=14% Similarity=0.132 Sum_probs=254.5
Q ss_pred CCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcc
Q 045318 510 SKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKH 589 (1388)
Q Consensus 510 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~ 589 (1388)
...++++.+..+.+... +.+..+++|++|. ++.|.+... .+..+++|++|++++|.++.+| ++++++
T Consensus 41 l~~L~~L~Ls~n~l~~~---~~l~~l~~L~~L~-----Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~ 107 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM---TGIEKLTGLTKLI-----CTSNNITTL---DLSQNTNLTYLACDSNKLTNLD--VTPLTK 107 (457)
T ss_dssp HTTCCEEECCSSCCCCC---TTGGGCTTCSEEE-----CCSSCCSCC---CCTTCTTCSEEECCSSCCSCCC--CTTCTT
T ss_pred cCCCCEEEccCCCcccC---hhhcccCCCCEEE-----ccCCcCCeE---ccccCCCCCEEECcCCCCceee--cCCCCc
Confidence 35678888877665433 4678899999995 566666552 2788999999999999999986 899999
Q ss_pred cceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEe
Q 045318 590 LRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVV 669 (1388)
Q Consensus 590 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~ 669 (1388)
|++|++++|.++.+| ++.+++|++|++++|.. ..+| ++.+++|++|++++|.....+ .++.+++|++|...
T Consensus 108 L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls-- 178 (457)
T 3bz5_A 108 LTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS-- 178 (457)
T ss_dssp CCEEECCSSCCSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC--
T ss_pred CCEEECCCCcCCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC--
Confidence 999999999999987 89999999999999854 4454 899999999999999755555 46677777766211
Q ss_pred ccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcc
Q 045318 670 GKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLK 749 (1388)
Q Consensus 670 ~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~ 749 (1388)
. +.+... .+..+++|+.|++++|.+.+. .+..+++|+
T Consensus 179 -~---------------------n~l~~l---------~l~~l~~L~~L~l~~N~l~~~------------~l~~l~~L~ 215 (457)
T 3bz5_A 179 -F---------------------NKITEL---------DVSQNKLLNRLNCDTNNITKL------------DLNQNIQLT 215 (457)
T ss_dssp -S---------------------SCCCCC---------CCTTCTTCCEEECCSSCCSCC------------CCTTCTTCS
T ss_pred -C---------------------Ccccee---------ccccCCCCCEEECcCCcCCee------------ccccCCCCC
Confidence 1 011110 155678899999999887762 256778999
Q ss_pred eEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCccee
Q 045318 750 QLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETL 829 (1388)
Q Consensus 750 ~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L 829 (1388)
.|+++++....+| +. .+++|+.|++++|.+... | ++.+++|+.|+++++ +|+.+
T Consensus 216 ~L~Ls~N~l~~ip--~~--~l~~L~~L~l~~N~l~~~-~-~~~l~~L~~L~l~~n--------------------~L~~L 269 (457)
T 3bz5_A 216 FLDCSSNKLTEID--VT--PLTQLTYFDCSVNPLTEL-D-VSTLSKLTTLHCIQT--------------------DLLEI 269 (457)
T ss_dssp EEECCSSCCSCCC--CT--TCTTCSEEECCSSCCSCC-C-CTTCTTCCEEECTTC--------------------CCSCC
T ss_pred EEECcCCcccccC--cc--ccCCCCEEEeeCCcCCCc-C-HHHCCCCCEEeccCC--------------------CCCEE
Confidence 9999999988887 33 489999999999987764 2 567888888887654 34455
Q ss_pred eccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEEEecccCccccCCCCCcceEEEEcCCCCe
Q 045318 830 FFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKKV 909 (1388)
Q Consensus 830 ~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~~ 909 (1388)
.+.+++....+. .+.+++|+.|++++|..+ +.+|...++|+.|.+.+| ++|+.|+++++...
T Consensus 270 ~l~~n~~~~~~~-------~~~l~~L~~L~Ls~n~~l-~~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~l~ 331 (457)
T 3bz5_A 270 DLTHNTQLIYFQ-------AEGCRKIKELDVTHNTQL-YLLDCQAAGITELDLSQN----------PKLVYLYLNNTELT 331 (457)
T ss_dssp CCTTCTTCCEEE-------CTTCTTCCCCCCTTCTTC-CEEECTTCCCSCCCCTTC----------TTCCEEECTTCCCS
T ss_pred ECCCCccCCccc-------ccccccCCEEECCCCccc-ceeccCCCcceEechhhc----------ccCCEEECCCCccc
Confidence 555554333321 345789999999997655 467766677776655443 56778887776532
Q ss_pred eecccCcCccccccccCCCCchhcchhhhccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhH
Q 045318 910 VWGSTDLSSLNSMVSSNVPNQVFLTGLLNQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAE 989 (1388)
Q Consensus 910 ~~~~~~~~~l~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~ 989 (1388)
. + ....+++|+.|++++|+++.+ +.|..|.++++. +..
T Consensus 332 ~-----------l--------------~l~~l~~L~~L~l~~N~l~~l-----------~~L~~L~l~~n~-l~g----- 369 (457)
T 3bz5_A 332 E-----------L--------------DVSHNTKLKSLSCVNAHIQDF-----------SSVGKIPALNNN-FEA----- 369 (457)
T ss_dssp C-----------C--------------CCTTCTTCSEEECCSSCCCBC-----------TTGGGSSGGGTS-EEE-----
T ss_pred c-----------c--------------ccccCCcCcEEECCCCCCCCc-----------cccccccccCCc-EEe-----
Confidence 1 1 125678999999999987754 334444333321 110
Q ss_pred hhhhhhcCCCCcceEEEecCCCCccccccccc
Q 045318 990 EADQQQQGLPCRLHYLELRSCPSLVKLPQTLL 1021 (1388)
Q Consensus 990 ~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~ 1021 (1388)
...+..|..+++++|...+.+|..+.
T Consensus 370 ------~~~~~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 370 ------EGQTITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp ------EEEEEECCCBCCBTTBEEEECCTTCB
T ss_pred ------cceeeecCccccccCcEEEEcChhHh
Confidence 01245688899999999999987653
No 37
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.87 E-value=1.3e-21 Score=227.81 Aligned_cols=97 Identities=20% Similarity=0.325 Sum_probs=64.9
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
..++.|++|+++++.+..+|. +..+++|++|++++|.+..+|. +.++++|++|++++|. +..+| .+.++++|++|+
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCG-GGTTCTTCSEEE
T ss_pred hhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCch-HHcCCCcCCEEE
Confidence 345667777777777777754 6777777777777777777766 7777777777777763 44444 577777777777
Q ss_pred cCCCCCcccCcCCCCCCCCCCCC
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+++|. +..++. +..+++|++|
T Consensus 117 l~~n~-i~~~~~-~~~l~~L~~L 137 (347)
T 4fmz_A 117 LNEDN-ISDISP-LANLTKMYSL 137 (347)
T ss_dssp CTTSC-CCCCGG-GTTCTTCCEE
T ss_pred CcCCc-ccCchh-hccCCceeEE
Confidence 77776 333333 4444444444
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=8.3e-21 Score=231.50 Aligned_cols=97 Identities=26% Similarity=0.348 Sum_probs=57.1
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcch-hhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCA-DMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 641 (1388)
+.+++|+|++|.++.++ ..|.++++|++|+|++|.+..+ |..++++++|++|+|++|. +..+|. .|.++++|++|+
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence 35666666666666653 4666666666666666666655 5566666666666666653 333443 356666666666
Q ss_pred cCCCCCcccCcCCCCCCCCCC
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQ 662 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~ 662 (1388)
+++|.+....|..++.+++|+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~ 131 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLK 131 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCC
T ss_pred CCCCccccCChhHccccccCC
Confidence 666663333333344433333
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.84 E-value=2.2e-20 Score=220.99 Aligned_cols=90 Identities=13% Similarity=0.165 Sum_probs=72.1
Q ss_pred cCceeeEEEeCCccccccccc-cccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 563 KLQCLRVLCLREYNICKISNT-IGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
.+.++++|+++++.+..+|.. +..+++|++|+|++|.+..+|. .++.+++|++|++++|......|..++++++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 356788999999999988864 6888999999999999888854 78899999999999886555556668889999999
Q ss_pred ecCCCCCcccCcC
Q 045318 641 NNYNVPLLEGMPL 653 (1388)
Q Consensus 641 ~l~~~~~~~~~p~ 653 (1388)
++++|. +..+|.
T Consensus 123 ~L~~n~-l~~l~~ 134 (390)
T 3o6n_A 123 VLERND-LSSLPR 134 (390)
T ss_dssp ECCSSC-CCCCCT
T ss_pred ECCCCc-cCcCCH
Confidence 998887 334443
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.84 E-value=3e-20 Score=232.19 Aligned_cols=101 Identities=15% Similarity=0.169 Sum_probs=75.4
Q ss_pred cCceeeEEEeCCccccccccc-cccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 563 KLQCLRVLCLREYNICKISNT-IGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
.+.++++|++++|.+..+|.. +..+++|++|+|++|.+..+|. .|+.+++|++|+|++|......|..|+++++|++|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 356788899999988888854 6788899999999998888754 88889999999999886555555667888899999
Q ss_pred ecCCCCCcccCcCC-CCCCCCCCCC
Q 045318 641 NNYNVPLLEGMPLR-IGHLSCLQTL 664 (1388)
Q Consensus 641 ~l~~~~~~~~~p~~-i~~L~~L~~L 664 (1388)
++++|. +..+|.. ++.+++|++|
T Consensus 129 ~L~~n~-l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 129 VLERND-LSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred EeeCCC-CCCCCHHHhccCCCCCEE
Confidence 988887 3344443 2444444433
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=221.57 Aligned_cols=303 Identities=17% Similarity=0.129 Sum_probs=199.2
Q ss_pred CCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhccc
Q 045318 534 DCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLY 611 (1388)
Q Consensus 534 ~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~ 611 (1388)
.+++++.|.+ +.+.+....+..+..+++|++|+|++|.+..+| ..++.+++|++|+|++|.+..+| ..+++++
T Consensus 43 ~l~~l~~l~l-----~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTF-----KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEE-----ESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEe-----cCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 4678888853 333443322333578899999999999999887 58999999999999999999884 5689999
Q ss_pred ccceeecCCCcchhhcchh-hcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCccccccccccccee
Q 045318 612 NLHTLLLESCSRLKKLCAD-MGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKL 690 (1388)
Q Consensus 612 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 690 (1388)
+|++|++++|. +..+|.. +.++++|++|++++|.+....|..++.+++|++|.... +.....
T Consensus 118 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~--------------- 180 (390)
T 3o6n_A 118 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHV--------------- 180 (390)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCS-SCCSBC---------------
T ss_pred CCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCC-CcCCcc---------------
Confidence 99999999984 5567765 58999999999999985544455688888888772211 111100
Q ss_pred EeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCC
Q 045318 691 KISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTF 770 (1388)
Q Consensus 691 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l 770 (1388)
.+..+++|+.|++++|.+.. +..+.+|+.|+++++....+|... +
T Consensus 181 -----------------~~~~l~~L~~L~l~~n~l~~--------------~~~~~~L~~L~l~~n~l~~~~~~~----~ 225 (390)
T 3o6n_A 181 -----------------DLSLIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSINVVRGPV----N 225 (390)
T ss_dssp -----------------CGGGCTTCSEEECCSSCCSE--------------EECCSSCSEEECCSSCCCEEECCC----C
T ss_pred -----------------ccccccccceeecccccccc--------------cCCCCcceEEECCCCeeeeccccc----c
Confidence 12234566666666554432 334456677777666665554432 4
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCccc
Q 045318 771 SNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVE 850 (1388)
Q Consensus 771 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 850 (1388)
++|+.|++++|.+.. .+.++.+++|++|++++|......+..+.. +++|+.|.+.++. +..+. ....
T Consensus 226 ~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~L~~n~-l~~~~-----~~~~ 292 (390)
T 3o6n_A 226 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVALN-----LYGQ 292 (390)
T ss_dssp SSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECCSSC-CCEEE-----CSSS
T ss_pred ccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccc------cccCCEEECCCCc-CcccC-----cccC
Confidence 567777777776554 355666777777777777555444444322 6667777766643 22221 1234
Q ss_pred ccccccEEeecCCccccccCCC---CCCCccEEEEecccCccccCCCCCcceEEEEcCCCC
Q 045318 851 VFPQLQELSLVRCSKLLGRLPE---HLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKK 908 (1388)
Q Consensus 851 ~~~~L~~L~l~~C~~L~~~~p~---~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~ 908 (1388)
.+++|++|++++| .+. .+|. .+++|+.|.+.++.-.......+++|+.|++++++.
T Consensus 293 ~l~~L~~L~L~~n-~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~L~~L~l~~N~~ 351 (390)
T 3o6n_A 293 PIPTLKVLDLSHN-HLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 351 (390)
T ss_dssp CCTTCCEEECCSS-CCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred CCCCCCEEECCCC-cce-ecCccccccCcCCEEECCCCccceeCchhhccCCEEEcCCCCc
Confidence 5777888888773 565 4443 346777777777765555566677888888877764
No 42
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.83 E-value=4.1e-20 Score=225.36 Aligned_cols=124 Identities=19% Similarity=0.189 Sum_probs=105.5
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCcccccccc-chhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 613 (1388)
++++.| +++.|.+....+..|..+++|++|+|++|.++.+ |..|+++.+|++|+|++|.+..+|. .+.++++|
T Consensus 32 ~~l~~L-----~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 106 (477)
T 2id5_A 32 TETRLL-----DLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106 (477)
T ss_dssp TTCSEE-----ECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTC
T ss_pred CCCcEE-----ECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCC
Confidence 577888 4677777766677889999999999999999977 6889999999999999999999976 47999999
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++|+|++|......|..+.++++|++|++++|.+....|..++.+++|++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQL 157 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEE
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEE
Confidence 999999997766678889999999999999998555555667777777766
No 43
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=3.7e-20 Score=231.39 Aligned_cols=303 Identities=17% Similarity=0.142 Sum_probs=192.2
Q ss_pred CCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCcccccccc-chhccc
Q 045318 534 DCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPE-SVNTLY 611 (1388)
Q Consensus 534 ~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~ 611 (1388)
.+.+++.+. ++.+.+....+..+..+++|++|+|++|.++.+| ..|+.+.+|++|+|++|.+..+|. .+++++
T Consensus 49 ~l~~l~~l~-----l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVT-----FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEE-----ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEE-----eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 456777774 4444444333344578899999999999999886 589999999999999999998855 579999
Q ss_pred ccceeecCCCcchhhcchh-hcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCccccccccccccee
Q 045318 612 NLHTLLLESCSRLKKLCAD-MGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKL 690 (1388)
Q Consensus 612 ~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 690 (1388)
+|++|+|++|. +..+|.. |+++++|++|++++|.+....|..++.+++|++|.... +...+.
T Consensus 124 ~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~--------------- 186 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS-NRLTHV--------------- 186 (597)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTT-SCCSBC---------------
T ss_pred CCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcC-CCCCCc---------------
Confidence 99999999985 4566655 58999999999999986555556788888888773211 111111
Q ss_pred EeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCC
Q 045318 691 KISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTF 770 (1388)
Q Consensus 691 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l 770 (1388)
.+..+++|+.|++++|.+.+ +..+.+|+.|+++++....+|..+ .
T Consensus 187 -----------------~~~~l~~L~~L~l~~n~l~~--------------l~~~~~L~~L~ls~n~l~~~~~~~----~ 231 (597)
T 3oja_B 187 -----------------DLSLIPSLFHANVSYNLLST--------------LAIPIAVEELDASHNSINVVRGPV----N 231 (597)
T ss_dssp -----------------CGGGCTTCSEEECCSSCCSE--------------EECCTTCSEEECCSSCCCEEECSC----C
T ss_pred -----------------ChhhhhhhhhhhcccCcccc--------------ccCCchhheeeccCCccccccccc----C
Confidence 12234455566665554332 233445666666666555444333 3
Q ss_pred CCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCccc
Q 045318 771 SNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVE 850 (1388)
Q Consensus 771 ~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~ 850 (1388)
++|+.|+|++|.+.. ++.++.+++|+.|++++|......+..+.. +++|+.|.+.++. +..+. ....
T Consensus 232 ~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~------l~~L~~L~Ls~N~-l~~l~-----~~~~ 298 (597)
T 3oja_B 232 VELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVK------MQRLERLYISNNR-LVALN-----LYGQ 298 (597)
T ss_dssp SCCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTT------CSSCCEEECTTSC-CCEEE-----CSSS
T ss_pred CCCCEEECCCCCCCC-ChhhccCCCCCEEECCCCccCCCCHHHhcC------ccCCCEEECCCCC-CCCCC-----cccc
Confidence 466666666665544 245566666666666666554444444322 5566666665532 12211 1223
Q ss_pred ccccccEEeecCCccccccCCC---CCCCccEEEEecccCccccCCCCCcceEEEEcCCCC
Q 045318 851 VFPQLQELSLVRCSKLLGRLPE---HLPSLKTLVIQECEQLLVTVPSIPTLCKLEIGGCKK 908 (1388)
Q Consensus 851 ~~~~L~~L~l~~C~~L~~~~p~---~l~~L~~L~i~~~~~~~~~~~~l~~L~~L~l~~~~~ 908 (1388)
.+++|+.|++++ |.+. .+|. .+++|+.|.+.+|.-.......+++|+.|++++++.
T Consensus 299 ~l~~L~~L~Ls~-N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~ 357 (597)
T 3oja_B 299 PIPTLKVLDLSH-NHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDW 357 (597)
T ss_dssp CCTTCCEEECCS-SCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCE
T ss_pred cCCCCcEEECCC-CCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCC
Confidence 467777777777 3554 4443 345667777766665555556677777777777653
No 44
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.82 E-value=1.6e-19 Score=210.12 Aligned_cols=300 Identities=17% Similarity=0.194 Sum_probs=170.0
Q ss_pred CcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCccc
Q 045318 511 KNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHL 590 (1388)
Q Consensus 511 ~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~L 590 (1388)
..++++.+..+.... ++.+..+++|++|. ++.+.+....+ +..+++|++|++++|.++.+| .+..+++|
T Consensus 44 ~~L~~L~l~~~~i~~---~~~~~~~~~L~~L~-----l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L 112 (347)
T 4fmz_A 44 ESITKLVVAGEKVAS---IQGIEYLTNLEYLN-----LNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNL 112 (347)
T ss_dssp TTCSEEECCSSCCCC---CTTGGGCTTCCEEE-----CCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTC
T ss_pred ccccEEEEeCCcccc---chhhhhcCCccEEE-----ccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcC
Confidence 345566555444322 23355566666663 34444433211 566667777777777666664 46667777
Q ss_pred ceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEec
Q 045318 591 RHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVG 670 (1388)
Q Consensus 591 r~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~ 670 (1388)
++|++++|.+..+|. +..+++|++|++++|.....++ .+..+++|++|++++|. ...++. ++.+++|++|.
T Consensus 113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~----- 183 (347)
T 4fmz_A 113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLS----- 183 (347)
T ss_dssp SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEE-----
T ss_pred CEEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEE-----
Confidence 777777777766655 6667777777777665444443 36667777777777666 233332 44455554441
Q ss_pred cCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcce
Q 045318 671 KNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQ 750 (1388)
Q Consensus 671 ~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~ 750 (1388)
+. .+..... ..+..+++|+.|++++|.+.... .+..+++|+.
T Consensus 184 ---------------------l~---~n~l~~~---~~~~~l~~L~~L~l~~n~l~~~~-----------~~~~~~~L~~ 225 (347)
T 4fmz_A 184 ---------------------LN---YNQIEDI---SPLASLTSLHYFTAYVNQITDIT-----------PVANMTRLNS 225 (347)
T ss_dssp ---------------------CT---TSCCCCC---GGGGGCTTCCEEECCSSCCCCCG-----------GGGGCTTCCE
T ss_pred ---------------------cc---CCccccc---ccccCCCccceeecccCCCCCCc-----------hhhcCCcCCE
Confidence 11 1111110 01445566777777766654421 1445567777
Q ss_pred EEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceee
Q 045318 751 LAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLF 830 (1388)
Q Consensus 751 L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~ 830 (1388)
|+++++....+|. +. .+++|++|++++|.+.. ++.+..+++|++|++++|.... ++ . ...+++|+.|.
T Consensus 226 L~l~~n~l~~~~~-~~--~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~n~l~~-~~-~------~~~l~~L~~L~ 293 (347)
T 4fmz_A 226 LKIGNNKITDLSP-LA--NLSQLTWLEIGTNQISD-INAVKDLTKLKMLNVGSNQISD-IS-V------LNNLSQLNSLF 293 (347)
T ss_dssp EECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCC-CG-G------GGGCTTCSEEE
T ss_pred EEccCCccCCCcc-hh--cCCCCCEEECCCCccCC-ChhHhcCCCcCEEEccCCccCC-Ch-h------hcCCCCCCEEE
Confidence 7777776666655 32 36777777777776544 3566777777777777774332 21 1 12367777777
Q ss_pred ccccccccccccCCCCCcccccccccEEeecCCccccccCC-CCCCCccEEEEeccc
Q 045318 831 FGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLP-EHLPSLKTLVIQECE 886 (1388)
Q Consensus 831 l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p-~~l~~L~~L~i~~~~ 886 (1388)
+.+++-. ... ...+..+++|++|++++| .+++..| ..+++|+.|++.+|.
T Consensus 294 L~~n~l~-~~~----~~~l~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 294 LNNNQLG-NED----MEVIGGLTNLTTLFLSQN-HITDIRPLASLSKMDSADFANQV 344 (347)
T ss_dssp CCSSCCC-GGG----HHHHHTCTTCSEEECCSS-SCCCCGGGGGCTTCSEESSSCC-
T ss_pred CcCCcCC-CcC----hhHhhccccCCEEEccCC-ccccccChhhhhccceeehhhhc
Confidence 7766421 111 112455778888888884 4654434 456677777666653
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.81 E-value=9.2e-20 Score=208.61 Aligned_cols=230 Identities=25% Similarity=0.351 Sum_probs=175.2
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
....+++|+|++|.++.+|..++++.+|++|+|++|.+..+|..++++++|++|+|++|.. ..+|..++++++|++|++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELSI 157 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEEC
Confidence 4578999999999999999999999999999999999999999999999999999999854 488999999999999999
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|.....+|..++... ....+.++++|+.|++++
T Consensus 158 ~~n~~~~~~p~~~~~~~---------------------------------------------~~~~~~~l~~L~~L~L~~ 192 (328)
T 4fcg_A 158 RACPELTELPEPLASTD---------------------------------------------ASGEHQGLVNLQSLRLEW 192 (328)
T ss_dssp EEETTCCCCCSCSEEEC----------------------------------------------CCCEEESTTCCEEEEEE
T ss_pred CCCCCccccChhHhhcc---------------------------------------------chhhhccCCCCCEEECcC
Confidence 99887777776554310 001234567788888888
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeec
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSI 801 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 801 (1388)
|.+.. .+ ..+..+++|+.|+++++....+|..+.. +++|++|++++|.+...+| .++.+++|+.|++
T Consensus 193 n~l~~-lp---------~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 193 TGIRS-LP---------ASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp ECCCC-CC---------GGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred CCcCc-ch---------HhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 87763 22 2245567888888888887778877654 7888888888888877777 5788888888888
Q ss_pred cCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCCCCCCccEEE
Q 045318 802 IGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPEHLPSLKTLV 881 (1388)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~~l~~L~~L~ 881 (1388)
++|...+.++. .++.+++|+.|++++|+.+ +.+|..+.+|..|.
T Consensus 261 ~~n~~~~~~p~-----------------------------------~~~~l~~L~~L~L~~n~~~-~~iP~~l~~L~~L~ 304 (328)
T 4fcg_A 261 KDCSNLLTLPL-----------------------------------DIHRLTQLEKLDLRGCVNL-SRLPSLIAQLPANC 304 (328)
T ss_dssp TTCTTCCBCCT-----------------------------------TGGGCTTCCEEECTTCTTC-CCCCGGGGGSCTTC
T ss_pred CCCCchhhcch-----------------------------------hhhcCCCCCEEeCCCCCch-hhccHHHhhccCce
Confidence 88765544332 2344678888888886544 47776555544444
Q ss_pred Eeccc
Q 045318 882 IQECE 886 (1388)
Q Consensus 882 i~~~~ 886 (1388)
+..++
T Consensus 305 ~l~l~ 309 (328)
T 4fcg_A 305 IILVP 309 (328)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 44433
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.81 E-value=6.8e-19 Score=202.84 Aligned_cols=195 Identities=21% Similarity=0.206 Sum_probs=122.9
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
..+++++++++.++.+|..+. .+|++|+|++|.++.+|. .++++++|++|++++|......|..++++++|++|+++
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 367888888888888886654 578888888888888865 68888888888888886555557788888888888888
Q ss_pred CCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEee
Q 045318 644 NVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWT 723 (1388)
Q Consensus 644 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 723 (1388)
+|. +..+|..+. ++|++|.. ..+.. ....+..+..+++|+.|++++|
T Consensus 109 ~n~-l~~l~~~~~--~~L~~L~l-----------------------------~~n~l-~~~~~~~~~~l~~L~~L~l~~n 155 (330)
T 1xku_A 109 KNQ-LKELPEKMP--KTLQELRV-----------------------------HENEI-TKVRKSVFNGLNQMIVVELGTN 155 (330)
T ss_dssp SSC-CSBCCSSCC--TTCCEEEC-----------------------------CSSCC-CBBCHHHHTTCTTCCEEECCSS
T ss_pred CCc-CCccChhhc--ccccEEEC-----------------------------CCCcc-cccCHhHhcCCccccEEECCCC
Confidence 887 456665553 44554411 11110 1112334667778888888877
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeecc
Q 045318 724 NSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSII 802 (1388)
Q Consensus 724 ~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 802 (1388)
.+.... .....+..+++|+.|+++++....+|..+ +++|++|++++|.+....| .++.+++|+.|+++
T Consensus 156 ~l~~~~-------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 224 (330)
T 1xku_A 156 PLKSSG-------IENGAFQGMKKLSYIRIADTNITTIPQGL----PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224 (330)
T ss_dssp CCCGGG-------BCTTGGGGCTTCCEEECCSSCCCSCCSSC----CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECC
T ss_pred cCCccC-------cChhhccCCCCcCEEECCCCccccCCccc----cccCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 654210 00112344556666666666655555443 2466666666665544433 45556666666665
Q ss_pred CCc
Q 045318 803 GMA 805 (1388)
Q Consensus 803 ~~~ 805 (1388)
+|.
T Consensus 225 ~n~ 227 (330)
T 1xku_A 225 FNS 227 (330)
T ss_dssp SSC
T ss_pred CCc
Confidence 553
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.80 E-value=7.2e-19 Score=202.70 Aligned_cols=193 Identities=19% Similarity=0.159 Sum_probs=118.1
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
..+++++++++.++.+|..+. .+|++|++++|.+..+ |..+.++++|++|++++|......|..++++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 367888888888888887664 6888888888888877 4578888888888888886555557788888888888888
Q ss_pred CCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEee
Q 045318 644 NVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWT 723 (1388)
Q Consensus 644 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 723 (1388)
+|. +..+|..+. ++|++|.. .. +.+. ......+..+++|+.|++++|
T Consensus 111 ~n~-l~~l~~~~~--~~L~~L~l---~~---------------------n~i~------~~~~~~~~~l~~L~~L~l~~n 157 (332)
T 2ft3_A 111 KNH-LVEIPPNLP--SSLVELRI---HD---------------------NRIR------KVPKGVFSGLRNMNCIEMGGN 157 (332)
T ss_dssp SSC-CCSCCSSCC--TTCCEEEC---CS---------------------SCCC------CCCSGGGSSCSSCCEEECCSC
T ss_pred CCc-CCccCcccc--ccCCEEEC---CC---------------------CccC------ccCHhHhCCCccCCEEECCCC
Confidence 887 446666554 45554411 00 0010 111223566677777777777
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeecc
Q 045318 724 NSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSII 802 (1388)
Q Consensus 724 ~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~ 802 (1388)
.+..... ....+..+ +|+.|+++++....+|..+ +++|++|++++|.+....+ .+..+++|+.|+++
T Consensus 158 ~l~~~~~-------~~~~~~~l-~L~~L~l~~n~l~~l~~~~----~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~ 225 (332)
T 2ft3_A 158 PLENSGF-------EPGAFDGL-KLNYLRISEAKLTGIPKDL----PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG 225 (332)
T ss_dssp CCBGGGS-------CTTSSCSC-CCSCCBCCSSBCSSCCSSS----CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred ccccCCC-------CcccccCC-ccCEEECcCCCCCccCccc----cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence 6532000 00112222 5555555555555555443 2456666666665544433 45555555555555
Q ss_pred CC
Q 045318 803 GM 804 (1388)
Q Consensus 803 ~~ 804 (1388)
+|
T Consensus 226 ~N 227 (332)
T 2ft3_A 226 HN 227 (332)
T ss_dssp SS
T ss_pred CC
Confidence 55
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.77 E-value=4e-19 Score=202.17 Aligned_cols=230 Identities=18% Similarity=0.197 Sum_probs=97.9
Q ss_pred HHHhhccCceeeEEEeCC-cccc-ccccccccCcccceeeccCcccc-ccccchhcccccceeecCCCcchhhcchhhcc
Q 045318 557 VVHMLLKLQCLRVLCLRE-YNIC-KISNTIGDLKHLRHLDLSETLIE-TLPESVNTLYNLHTLLLESCSRLKKLCADMGN 633 (1388)
Q Consensus 557 ~~~~~~~l~~Lr~L~L~~-~~i~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~ 633 (1388)
+|..+..+++|++|+|++ |.+. .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.....+|..++.
T Consensus 68 ~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 147 (313)
T 1ogq_A 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS 147 (313)
T ss_dssp CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG
T ss_pred cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhc
Confidence 334444444555555542 4443 34444455555555555555444 44444555555555555544333344444455
Q ss_pred cCCCCeeecCCCCCcccCcCCCCCCC-CCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCC
Q 045318 634 LIKLRHLNNYNVPLLEGMPLRIGHLS-CLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGK 712 (1388)
Q Consensus 634 L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~ 712 (1388)
+++|++|++++|.+...+|..++.+. +|++|... .+...+.....+..+. |+ .+ .+..+... ...+..+..+
T Consensus 148 l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~-~L---~Ls~N~l~-~~~~~~~~~l 220 (313)
T 1ogq_A 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LA-FV---DLSRNMLE-GDASVLFGSD 220 (313)
T ss_dssp CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CS-EE---ECCSSEEE-ECCGGGCCTT
T ss_pred CCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-cc-EE---ECcCCccc-CcCCHHHhcC
Confidence 55555555555443334444444443 44433110 0000000000011100 00 00 01111100 0122344555
Q ss_pred CCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC-CCCcccCCCCCCCccEEeeecCCCCCCCCCCC
Q 045318 713 RNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGA-NFPIWLGDSTFSNLELLRFENCAMCTSLPSIG 791 (1388)
Q Consensus 713 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~ 791 (1388)
++|+.|++++|.+.+. ...+..+++|++|+++++... .+|.++.. +++|++|++++|.+.+.+|..+
T Consensus 221 ~~L~~L~L~~N~l~~~----------~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 221 KNTQKIHLAKNSLAFD----------LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ--LKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp SCCSEEECCSSEECCB----------GGGCCCCTTCCEEECCSSCCEECCCGGGGG--CTTCCEEECCSSEEEEECCCST
T ss_pred CCCCEEECCCCceeee----------cCcccccCCCCEEECcCCcccCcCChHHhc--CcCCCEEECcCCcccccCCCCc
Confidence 6666666665554431 111333455555555555544 44544443 4555555555555554455445
Q ss_pred CCCCcceeeccCCc
Q 045318 792 QLPALKHLSIIGMA 805 (1388)
Q Consensus 792 ~l~~L~~L~L~~~~ 805 (1388)
.+++|+.|++.+|+
T Consensus 289 ~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 289 NLQRFDVSAYANNK 302 (313)
T ss_dssp TGGGSCGGGTCSSS
T ss_pred cccccChHHhcCCC
Confidence 55555555555554
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.76 E-value=3.1e-19 Score=203.05 Aligned_cols=250 Identities=14% Similarity=0.135 Sum_probs=181.6
Q ss_pred ceeeEEEeCCcccc---ccccccccCcccceeeccC-cccc-ccccchhcccccceeecCCCcchhhcchhhcccCCCCe
Q 045318 565 QCLRVLCLREYNIC---KISNTIGDLKHLRHLDLSE-TLIE-TLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRH 639 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~ 639 (1388)
..++.|+|++|.+. .+|..++++++|++|+|++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 57999999999998 5899999999999999995 7776 78999999999999999999777789999999999999
Q ss_pred eecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCC-CCCeE
Q 045318 640 LNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKR-NLDVL 718 (1388)
Q Consensus 640 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~-~L~~L 718 (1388)
|++++|.+...+|..++.+++|++|... .+.. .+ ..+..+..++ +|+.|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l----------------------------~~-~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFD-GNRI----------------------------SG-AIPDSYGSFSKLFTSM 179 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECC-SSCC----------------------------EE-ECCGGGGCCCTTCCEE
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECc-CCcc----------------------------cC-cCCHHHhhhhhcCcEE
Confidence 9999999666888889999888887221 1111 10 1123344555 77777
Q ss_pred EEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCC-CCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcc
Q 045318 719 FLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGAN-FPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALK 797 (1388)
Q Consensus 719 ~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~-~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~ 797 (1388)
++++|.+.+..+.. +..+. |+.|+++++.... .|..+. .+++|+.|++++|.+...+|.+..+++|+
T Consensus 180 ~L~~N~l~~~~~~~---------~~~l~-L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~l~~L~ 247 (313)
T 1ogq_A 180 TISRNRLTGKIPPT---------FANLN-LAFVDLSRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGLSKNLN 247 (313)
T ss_dssp ECCSSEEEEECCGG---------GGGCC-CSEEECCSSEEEECCGGGCC--TTSCCSEEECCSSEECCBGGGCCCCTTCC
T ss_pred ECcCCeeeccCChH---------HhCCc-ccEEECcCCcccCcCCHHHh--cCCCCCEEECCCCceeeecCcccccCCCC
Confidence 77777665432222 22223 7777777776543 344444 37788888888888777667777788888
Q ss_pred eeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccc
Q 045318 798 HLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLG 868 (1388)
Q Consensus 798 ~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~ 868 (1388)
+|++++|.....++..+.. +++|+.|.+.+++- .... + ..+.+++|+.|++.+++.+.+
T Consensus 248 ~L~Ls~N~l~~~~p~~l~~------l~~L~~L~Ls~N~l-~~~i---p--~~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 248 GLDLRNNRIYGTLPQGLTQ------LKFLHSLNVSFNNL-CGEI---P--QGGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEECCSSCCEECCCGGGGG------CTTCCEEECCSSEE-EEEC---C--CSTTGGGSCGGGTCSSSEEES
T ss_pred EEECcCCcccCcCChHHhc------CcCCCEEECcCCcc-cccC---C--CCccccccChHHhcCCCCccC
Confidence 8888888765555555433 77788888877642 2111 1 236689999999999666664
No 50
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.76 E-value=8.7e-19 Score=200.48 Aligned_cols=123 Identities=20% Similarity=0.338 Sum_probs=103.3
Q ss_pred CCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccc
Q 045318 535 CKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 535 ~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
..+++.|. ++.+.+. .+|..+..+++|++|+|++|.++.+|..++++.+|++|+|++|.+..+|..++++++|+
T Consensus 80 ~~~l~~L~-----L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALE-----LRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEE-----EESSCCS-SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEE-----ccCCCch-hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 45677774 4444544 45666778999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCcchhhcchhhcc---------cCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 615 TLLLESCSRLKKLCADMGN---------LIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 615 ~L~L~~~~~~~~lp~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+|++++|.....+|..++. +++|++|++++|. +..+|..++.+++|++|
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~lp~~l~~l~~L~~L 211 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSL 211 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CCCCCGGGGGCTTCCEE
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cCcchHhhcCCCCCCEE
Confidence 9999999888889988765 8999999999887 44777777777766666
No 51
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.75 E-value=7.6e-18 Score=194.11 Aligned_cols=273 Identities=16% Similarity=0.119 Sum_probs=156.0
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccchhcccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
+++++| +++.+.+....+..|..+++|++|+|++|.++.+ |..++++++|++|+|++|.+..+|..+. ++|+
T Consensus 54 ~~l~~L-----~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~ 126 (332)
T 2ft3_A 54 PDTTLL-----DLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLV 126 (332)
T ss_dssp TTCCEE-----ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCC
T ss_pred CCCeEE-----ECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCC
Confidence 456666 3455555544455567777777777777777765 4667777777777777777777776655 6777
Q ss_pred eeecCCCcchhhcchhhcccCCCCeeecCCCCCcc--cCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 615 TLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLE--GMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 615 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
+|++++|......+..+..+++|++|++++|.+.. ..|..++.+ +|++|....
T Consensus 127 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~------------------------ 181 (332)
T 2ft3_A 127 ELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE------------------------ 181 (332)
T ss_dssp EEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS------------------------
T ss_pred EEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC------------------------
Confidence 77777764433333346777777777777776421 334445554 555552110
Q ss_pred ecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPI-WLGDSTFS 771 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~ 771 (1388)
+.+... +..+ .++|+.|++++|.+....+ ..+..+++|+.|+++++....++. ++. .++
T Consensus 182 n~l~~l-------~~~~--~~~L~~L~l~~n~i~~~~~---------~~l~~l~~L~~L~L~~N~l~~~~~~~~~--~l~ 241 (332)
T 2ft3_A 182 AKLTGI-------PKDL--PETLNELHLDHNKIQAIEL---------EDLLRYSKLYRLGLGHNQIRMIENGSLS--FLP 241 (332)
T ss_dssp SBCSSC-------CSSS--CSSCSCCBCCSSCCCCCCT---------TSSTTCTTCSCCBCCSSCCCCCCTTGGG--GCT
T ss_pred CCCCcc-------Cccc--cCCCCEEECCCCcCCccCH---------HHhcCCCCCCEEECCCCcCCcCChhHhh--CCC
Confidence 011110 1111 1567778888777665322 235566778888888887766654 444 378
Q ss_pred CccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccc
Q 045318 772 NLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEV 851 (1388)
Q Consensus 772 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 851 (1388)
+|++|++++|.+....+.++.+++|+.|++++|.........|.+......++.|+.+.+.+.|.. .+.. ....+..
T Consensus 242 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~-~~~~--~~~~~~~ 318 (332)
T 2ft3_A 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP-YWEV--QPATFRC 318 (332)
T ss_dssp TCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC-GGGS--CGGGGTT
T ss_pred CCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc-cccc--Ccccccc
Confidence 888888888877643335788888888888888544322222222111122455556655555421 1110 1123344
Q ss_pred cccccEEeecCC
Q 045318 852 FPQLQELSLVRC 863 (1388)
Q Consensus 852 ~~~L~~L~l~~C 863 (1388)
+++|+.|++++|
T Consensus 319 l~~L~~l~l~~n 330 (332)
T 2ft3_A 319 VTDRLAIQFGNY 330 (332)
T ss_dssp BCCSTTEEC---
T ss_pred cchhhhhhcccc
Confidence 555666665553
No 52
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.74 E-value=1.1e-17 Score=192.78 Aligned_cols=249 Identities=15% Similarity=0.099 Sum_probs=132.7
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccchhcccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPESVNTLYNLH 614 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~ 614 (1388)
++++.| +++.+.+....+..|..+++|++|+|++|.++.+ |..++.+++|++|+|++|.++.+|..+. ++|+
T Consensus 52 ~~l~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~ 124 (330)
T 1xku_A 52 PDTALL-----DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQ 124 (330)
T ss_dssp TTCCEE-----ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCC
T ss_pred CCCeEE-----ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cccc
Confidence 345555 2444444443334456666666666666666655 4566666666666666666666665554 5666
Q ss_pred eeecCCCcchhhcchhhcccCCCCeeecCCCCCcc--cCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 615 TLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLE--GMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 615 ~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
+|++++|......+..+.++++|++|++++|.+.. ..+..++.+++|++|..
T Consensus 125 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l-------------------------- 178 (330)
T 1xku_A 125 ELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI-------------------------- 178 (330)
T ss_dssp EEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC--------------------------
T ss_pred EEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEEC--------------------------
Confidence 66666664433334456666666666666665321 23334444444444411
Q ss_pred ecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPI-WLGDSTFS 771 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~ 771 (1388)
. .+.... .+..+ .++|+.|++++|.+.+..+ ..+..+++|+.|+++++....++. ++.. ++
T Consensus 179 ~---~n~l~~--l~~~~--~~~L~~L~l~~n~l~~~~~---------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~--l~ 240 (330)
T 1xku_A 179 A---DTNITT--IPQGL--PPSLTELHLDGNKITKVDA---------ASLKGLNNLAKLGLSFNSISAVDNGSLAN--TP 240 (330)
T ss_dssp C---SSCCCS--CCSSC--CTTCSEEECTTSCCCEECT---------GGGTTCTTCCEEECCSSCCCEECTTTGGG--ST
T ss_pred C---CCcccc--CCccc--cccCCEEECCCCcCCccCH---------HHhcCCCCCCEEECCCCcCceeChhhccC--CC
Confidence 1 000000 00011 1567777777666554211 234556677777777776655543 4432 67
Q ss_pred CccEEeeecCCCCCCCCCCCCCCCcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccc
Q 045318 772 NLELLRFENCAMCTSLPSIGQLPALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMP 835 (1388)
Q Consensus 772 ~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~ 835 (1388)
+|++|++++|.+......+..+++|++|++++|......+..|.+......++.++.+.+.+.|
T Consensus 241 ~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 241 HLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCEEECCCCcCccCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCc
Confidence 7888888877766433357777788888887775433222222221111223445555555444
No 53
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.74 E-value=2.7e-17 Score=202.22 Aligned_cols=78 Identities=22% Similarity=0.294 Sum_probs=65.8
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
..+++|++++|.++.+|..+. .+|++|+|++|.|+.+|. .+++|++|+|++|. +..+|. .+++|++|++++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~Ls~ 110 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQ-LTSLPV---LPPGLLELSIFS 110 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCC-CSCCCC---CCTTCCEEEECS
T ss_pred CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCc-CCcCCC---CCCCCCEEECcC
Confidence 458999999999999998776 799999999999999988 67899999999985 566776 778999999998
Q ss_pred CCCcccCc
Q 045318 645 VPLLEGMP 652 (1388)
Q Consensus 645 ~~~~~~~p 652 (1388)
|. +..+|
T Consensus 111 N~-l~~l~ 117 (622)
T 3g06_A 111 NP-LTHLP 117 (622)
T ss_dssp CC-CCCCC
T ss_pred Cc-CCCCC
Confidence 87 33344
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.74 E-value=8.7e-20 Score=229.70 Aligned_cols=202 Identities=17% Similarity=0.119 Sum_probs=104.2
Q ss_pred ccCceeeEEEeCCccccc-cccccccC--cccceeeccCcc-cc--ccccchhcccccceeecCCCcchhh----cchhh
Q 045318 562 LKLQCLRVLCLREYNICK-ISNTIGDL--KHLRHLDLSETL-IE--TLPESVNTLYNLHTLLLESCSRLKK----LCADM 631 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~-lp~~i~~l--~~Lr~L~L~~~~-i~--~lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i 631 (1388)
..++.|++|+|++|.++. .+..+..+ .+|++|+|++|. +. .++..+.++++|++|+|++|..... ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 466777777777776652 23444443 347777777764 21 2334445677777777777753222 33344
Q ss_pred cccCCCCeeecCCCCCc----ccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhh
Q 045318 632 GNLIKLRHLNNYNVPLL----EGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDA 707 (1388)
Q Consensus 632 ~~L~~L~~L~l~~~~~~----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~ 707 (1388)
..+++|++|++++|... ..++..+..+++|++|. +.. +. ....+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~--------------------------L~~---~~--~~~l~~ 237 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVK--------------------------VGD---FE--ILELVG 237 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEE--------------------------CSS---CB--GGGGHH
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEe--------------------------ccC---cc--HHHHHH
Confidence 56777777777776632 12222233344444441 111 00 001123
Q ss_pred hcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCC
Q 045318 708 ELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSL 787 (1388)
Q Consensus 708 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l 787 (1388)
.+..+++|+.|+++........ ......+..+++|+.|.+.+.....+|..+.. +++|++|++++|.+....
T Consensus 238 ~~~~~~~L~~L~l~~~~~~~~~------~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~--~~~L~~L~Ls~~~l~~~~ 309 (592)
T 3ogk_B 238 FFKAAANLEEFCGGSLNEDIGM------PEKYMNLVFPRKLCRLGLSYMGPNEMPILFPF--AAQIRKLDLLYALLETED 309 (592)
T ss_dssp HHHHCTTCCEEEECBCCCCTTC------TTSSSCCCCCTTCCEEEETTCCTTTGGGGGGG--GGGCCEEEETTCCCCHHH
T ss_pred HHhhhhHHHhhcccccccccch------HHHHHHhhccccccccCccccchhHHHHHHhh--cCCCcEEecCCCcCCHHH
Confidence 3445566666666542211100 01123344556666666666554555555543 667777777776632211
Q ss_pred C--CCCCCCCcceeecc
Q 045318 788 P--SIGQLPALKHLSII 802 (1388)
Q Consensus 788 ~--~l~~l~~L~~L~L~ 802 (1388)
. .++.+++|++|+++
T Consensus 310 ~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 310 HCTLIQKCPNLEVLETR 326 (592)
T ss_dssp HHHHHTTCTTCCEEEEE
T ss_pred HHHHHHhCcCCCEEecc
Confidence 1 24566677777665
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.72 E-value=3.5e-17 Score=190.32 Aligned_cols=77 Identities=19% Similarity=0.162 Sum_probs=46.0
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
.+.+++++.++.+|..+. .+|++|++++|.++.+|. .+.++++|++|++++|......|..+.++++|++|++++|.
T Consensus 34 ~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 34 GICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp SEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred eEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 345666666666665444 366666666666666654 56666666666666664333334456666666666666665
No 56
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.72 E-value=8.2e-20 Score=222.06 Aligned_cols=94 Identities=28% Similarity=0.147 Sum_probs=56.0
Q ss_pred CCcceEEEeeeeeeeeccc-CCccccCCCCccEEEEcCCCchhhhhhhHhhhhhh-cCCCCcceEEEecCCCCcc----c
Q 045318 942 PILEELAICNTKVTYLWQT-GSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQ-QGLPCRLHYLELRSCPSLV----K 1015 (1388)
Q Consensus 942 ~~L~~L~l~~~~l~~l~~~-~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~-~~~l~~L~~L~L~~~~~~~----~ 1015 (1388)
++|++|++++|.++..... ....+..+++|+.|++++|. +....... .... ....++|++|++++|.+.. .
T Consensus 313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~--l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRE--LCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHH--HHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCc-cccccHHH--HHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 4666666666655533110 01234556778888887763 33322111 0000 1125678888888887764 6
Q ss_pred ccccccCCCccceEEEccCCCCc
Q 045318 1016 LPQTLLSLSSLRQLKISECHSMK 1038 (1388)
Q Consensus 1016 ~p~~~~~l~~L~~L~l~~~~~l~ 1038 (1388)
+|..+..+++|++|++++|+...
T Consensus 390 l~~~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp HHHHHHHCCCCCEEECCSSSCCH
T ss_pred HHHHHHhCCCccEEECCCCCCCH
Confidence 77777778888889988887543
No 57
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.67 E-value=2.7e-15 Score=184.50 Aligned_cols=254 Identities=28% Similarity=0.344 Sum_probs=144.3
Q ss_pred cceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEe
Q 045318 1001 RLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHI 1080 (1388)
Q Consensus 1001 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l 1080 (1388)
+++.|++++|.+. .+|..+. ++|++|++++|. ++.+|. .+++|++|++++|. ++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC
Confidence 3556666555433 4454442 566666666664 334443 24456666665543 444443 4456666666
Q ss_pred ecCcCcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCCCCc
Q 045318 1081 QSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRGALP 1160 (1388)
Q Consensus 1081 ~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~~~~ 1160 (1388)
++|. ++ .+|. .+.+|+.|++++| .++.++. .+++|+.|++++| .+..++. .+
T Consensus 109 s~N~-l~---------------~l~~----~l~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N-~l~~l~~---~~ 160 (622)
T 3g06_A 109 FSNP-LT---------------HLPA----LPSGLCKLWIFGN-QLTSLPV---LPPGLQELSVSDN-QLASLPA---LP 160 (622)
T ss_dssp CSCC-CC---------------CCCC----CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC---CC
T ss_pred cCCc-CC---------------CCCC----CCCCcCEEECCCC-CCCcCCC---CCCCCCEEECcCC-cCCCcCC---cc
Confidence 6552 22 2222 1122666666663 4555532 1245677777664 3444432 23
Q ss_pred cccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccCCCCcc
Q 045318 1161 KVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDCPSLGS 1240 (1388)
Q Consensus 1161 ~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c~~l~~ 1240 (1388)
++|+.|++++| .+..+|. .+++|+.|++++| .++.+|.. .++|+.|++++| .++.
T Consensus 161 ~~L~~L~L~~N-~l~~l~~--------------------~~~~L~~L~Ls~N-~l~~l~~~--~~~L~~L~L~~N-~l~~ 215 (622)
T 3g06_A 161 SELCKLWAYNN-QLTSLPM--------------------LPSGLQELSVSDN-QLASLPTL--PSELYKLWAYNN-RLTS 215 (622)
T ss_dssp TTCCEEECCSS-CCSCCCC--------------------CCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSS
T ss_pred CCCCEEECCCC-CCCCCcc--------------------cCCCCcEEECCCC-CCCCCCCc--cchhhEEECcCC-cccc
Confidence 56777777664 4444441 1356777777763 45666543 267777777766 4555
Q ss_pred cCCCCCCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc-C
Q 045318 1241 FTADCFPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS-S 1319 (1388)
Q Consensus 1241 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~-~ 1319 (1388)
+|. .+++|+.|++++|.+.+ ++ ..+++|+.|++++| .+..+|. .+++|+.|++++|. ++.+| .
T Consensus 216 l~~--~~~~L~~L~Ls~N~L~~-lp----~~l~~L~~L~Ls~N--~L~~lp~------~~~~L~~L~Ls~N~-L~~lp~~ 279 (622)
T 3g06_A 216 LPA--LPSGLKELIVSGNRLTS-LP----VLPSELKELMVSGN--RLTSLPM------LPSGLLSLSVYRNQ-LTRLPES 279 (622)
T ss_dssp CCC--CCTTCCEEECCSSCCSC-CC----CCCTTCCEEECCSS--CCSCCCC------CCTTCCEEECCSSC-CCSCCGG
T ss_pred cCC--CCCCCCEEEccCCccCc-CC----CCCCcCcEEECCCC--CCCcCCc------ccccCcEEeCCCCC-CCcCCHH
Confidence 553 34677777777777653 22 34577777777773 4445553 45677777777775 66777 6
Q ss_pred CCCCCCcCcEeecCCC
Q 045318 1320 IENLTSLQFLRFRNCP 1335 (1388)
Q Consensus 1320 ~~~l~~L~~L~l~~c~ 1335 (1388)
+.++++|+.|++++|+
T Consensus 280 l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 280 LIHLSSETTVNLEGNP 295 (622)
T ss_dssp GGGSCTTCEEECCSCC
T ss_pred HhhccccCEEEecCCC
Confidence 7777888888887753
No 58
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.1e-16 Score=182.22 Aligned_cols=224 Identities=17% Similarity=0.103 Sum_probs=126.4
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc---ccccccCcccceeeccCccccccccchhcccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI---SNTIGDLKHLRHLDLSETLIETLPESVNTLYN 612 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 612 (1388)
++|+.|. ++.+.+....+..|..+++|++|+|++|.++.+ |..+..+.+|++|+|++|.+..+|..+..+++
T Consensus 28 ~~l~~L~-----L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLE-----LESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 102 (306)
T ss_dssp TTCCEEE-----CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTT
T ss_pred CCCCEEE-----CCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCC
Confidence 3555552 344444322222345666666666666666544 45555666666666666666666666666666
Q ss_pred cceeecCCCcchhhcc--hhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCccccccccccccee
Q 045318 613 LHTLLLESCSRLKKLC--ADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKL 690 (1388)
Q Consensus 613 L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L 690 (1388)
|++|++++|.. ..++ ..+..+++|++|++++|.+....|..++.+++|++|..
T Consensus 103 L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l------------------------ 157 (306)
T 2z66_A 103 LEHLDFQHSNL-KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM------------------------ 157 (306)
T ss_dssp CCEEECTTSEE-ESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEEC------------------------
T ss_pred CCEEECCCCcc-cccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEEC------------------------
Confidence 66666666533 3333 35666666666666666644444444555555555411
Q ss_pred EeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCCCC
Q 045318 691 KISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPI-WLGDST 769 (1388)
Q Consensus 691 ~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~-~~~~~~ 769 (1388)
..+.......+..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++++....++. .+. .
T Consensus 158 -----~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---------~~~~~l~~L~~L~L~~N~l~~~~~~~~~--~ 221 (306)
T 2z66_A 158 -----AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSP---------TAFNSLSSLQVLNMSHNNFFSLDTFPYK--C 221 (306)
T ss_dssp -----TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT---------TTTTTCTTCCEEECTTSCCSBCCSGGGT--T
T ss_pred -----CCCccccccchhHHhhCcCCCEEECCCCCcCCcCH---------HHhcCCCCCCEEECCCCccCccChhhcc--C
Confidence 11110111123345566677777777666554211 224455667777777666655554 232 3
Q ss_pred CCCccEEeeecCCCCCCCC-CCCCCC-CcceeeccCCc
Q 045318 770 FSNLELLRFENCAMCTSLP-SIGQLP-ALKHLSIIGMA 805 (1388)
Q Consensus 770 l~~L~~L~L~~~~~~~~l~-~l~~l~-~L~~L~L~~~~ 805 (1388)
+++|++|++++|.+....| .+..+| +|+.|++++|+
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 6777777777777666555 466664 77777777775
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.66 E-value=1.3e-17 Score=209.87 Aligned_cols=132 Identities=17% Similarity=0.089 Sum_probs=58.4
Q ss_pred cCCCcceEEEeeeeeeeecccCCccccC-CCC-ccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccc--
Q 045318 940 ELPILEELAICNTKVTYLWQTGSGLLQD-ISS-LHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVK-- 1015 (1388)
Q Consensus 940 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~-l~~-L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-- 1015 (1388)
.+++|++|++++|.++.... ..+.. +++ |++|++++|..+....... ....+++|++|+|++|.....
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~---~~l~~~~~~~L~~L~L~~~~~~~~~~l~~-----~~~~~~~L~~L~L~~~~~~~~~~ 181 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDL---DRLAKARADDLETLKLDKCSGFTTDGLLS-----IVTHCRKIKTLLMEESSFSEKDG 181 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHH---HHHHHHHGGGCCEEEEESCEEEEHHHHHH-----HHHHCTTCSEEECTTCEEECCCS
T ss_pred hCCCCCeEEeeccEecHHHH---HHHHHhccccCcEEECcCCCCcCHHHHHH-----HHhhCCCCCEEECccccccCcch
Confidence 45666666666664433211 11222 223 6666666665322111100 011245666666666643322
Q ss_pred --ccccccCCCccceEEEccCCCC----ccChhhhccCCCCCccceeeccCCCcccccc-ccCCCCccEEEeec
Q 045318 1016 --LPQTLLSLSSLRQLKISECHSM----KSLPEALMHNDNAPLESLNVVDCNSLTYIAR-VQLPPSLKLLHIQS 1082 (1388)
Q Consensus 1016 --~p~~~~~l~~L~~L~l~~~~~l----~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~sL~~L~l~~ 1082 (1388)
++..+..+++|++|++++|... ..++..+ ..+++|++|++.+|.. ..++. ....++|++|+++.
T Consensus 182 ~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~--~~~~~L~~L~L~~~~~-~~l~~~~~~~~~L~~L~l~~ 252 (592)
T 3ogk_B 182 KWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIA--RNCRSLVSVKVGDFEI-LELVGFFKAAANLEEFCGGS 252 (592)
T ss_dssp HHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHH--HHCTTCCEEECSSCBG-GGGHHHHHHCTTCCEEEECB
T ss_pred hHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHH--hhCCCCcEEeccCccH-HHHHHHHhhhhHHHhhcccc
Confidence 2223334566666666666543 1222222 1245566666665432 22221 12235556665554
No 60
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.65 E-value=1.8e-16 Score=184.29 Aligned_cols=251 Identities=19% Similarity=0.173 Sum_probs=136.6
Q ss_pred CCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccc-hhcccccc
Q 045318 537 HLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPES-VNTLYNLH 614 (1388)
Q Consensus 537 ~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~ 614 (1388)
+|++| +++.+.+....+..+..+++|++|++++|.++.++ ..++++.+|++|+|++|.++.+|.. ++++++|+
T Consensus 53 ~L~~L-----~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 127 (353)
T 2z80_A 53 AVKSL-----DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLT 127 (353)
T ss_dssp TCCEE-----ECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCS
T ss_pred cCcEE-----ECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCC
Confidence 45555 24444444333334556666666666666666553 4566666666666666666666554 56666666
Q ss_pred eeecCCCcchhhcch--hhcccCCCCeeecCCCCCcccC-cCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeE
Q 045318 615 TLLLESCSRLKKLCA--DMGNLIKLRHLNNYNVPLLEGM-PLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLK 691 (1388)
Q Consensus 615 ~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~ 691 (1388)
+|++++|. +..+|. .+.++++|++|++++|.....+ |..++.+++|++|. +..+...+.....+..+++|+ .+.
T Consensus 128 ~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~-l~~n~l~~~~~~~l~~l~~L~-~L~ 204 (353)
T 2z80_A 128 FLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELE-IDASDLQSYEPKSLKSIQNVS-HLI 204 (353)
T ss_dssp EEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEE-EEETTCCEECTTTTTTCSEEE-EEE
T ss_pred EEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEE-CCCCCcCccCHHHHhccccCC-eec
Confidence 66666653 334443 4566666666666665323333 33455555555552 222222222222333333333 222
Q ss_pred eecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCC-----CCCcccC
Q 045318 692 ISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGA-----NFPIWLG 766 (1388)
Q Consensus 692 i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~-----~~p~~~~ 766 (1388)
+. .+.. .......+..+++|+.|++++|.+.+..... +........++.+++.++... .+|.++.
T Consensus 205 l~---~n~l-~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~------l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~ 274 (353)
T 2z80_A 205 LH---MKQH-ILLLEIFVDVTSSVECLELRDTDLDTFHFSE------LSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274 (353)
T ss_dssp EE---CSCS-TTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCBCCHHHHHHHHHHHH
T ss_pred CC---CCcc-ccchhhhhhhcccccEEECCCCccccccccc------cccccccchhhccccccccccCcchhhhHHHHh
Confidence 22 2221 1222233445688888999888877643221 112234456677777665543 2455665
Q ss_pred CCCCCCccEEeeecCCCCCCCCC-CCCCCCcceeeccCCcCc
Q 045318 767 DSTFSNLELLRFENCAMCTSLPS-IGQLPALKHLSIIGMALV 807 (1388)
Q Consensus 767 ~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~~L~L~~~~~~ 807 (1388)
. +++|++|++++|.+....+. ++.+++|++|++++|+..
T Consensus 275 ~--l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 275 Q--ISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp T--CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred c--ccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 3 78899999998887743333 578888999999888643
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.65 E-value=4.5e-17 Score=185.84 Aligned_cols=255 Identities=15% Similarity=0.110 Sum_probs=140.1
Q ss_pred HHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccC
Q 045318 557 VVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLI 635 (1388)
Q Consensus 557 ~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 635 (1388)
....+..+++|++|+|++|.++.++ ..++++++|++|+|++|.+..++. +..+++|++|++++|. +..+| ..+
T Consensus 26 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~ 99 (317)
T 3o53_A 26 LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGP 99 (317)
T ss_dssp HHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECT
T ss_pred HHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCC
Confidence 3334456667777777777777665 567777777777777777776654 7777777777777763 33333 347
Q ss_pred CCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCC
Q 045318 636 KLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNL 715 (1388)
Q Consensus 636 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L 715 (1388)
+|++|++++|.+. .++.. .+++|++|.. . .+... ...+..+..+++|
T Consensus 100 ~L~~L~l~~n~l~-~~~~~--~~~~L~~L~l---~--------------------------~N~l~-~~~~~~~~~l~~L 146 (317)
T 3o53_A 100 SIETLHAANNNIS-RVSCS--RGQGKKNIYL---A--------------------------NNKIT-MLRDLDEGCRSRV 146 (317)
T ss_dssp TCCEEECCSSCCS-EEEEC--CCSSCEEEEC---C--------------------------SSCCC-SGGGBCTGGGSSE
T ss_pred CcCEEECCCCccC-CcCcc--ccCCCCEEEC---C--------------------------CCCCC-CccchhhhccCCC
Confidence 7777777777633 33321 2344444411 1 01000 0111223344555
Q ss_pred CeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCC
Q 045318 716 DVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPA 795 (1388)
Q Consensus 716 ~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~ 795 (1388)
+.|++++|.+....+.. ....+++|+.|+++++....+|... .+++|++|++++|.+....+.+..+++
T Consensus 147 ~~L~Ls~N~l~~~~~~~--------~~~~l~~L~~L~L~~N~l~~~~~~~---~l~~L~~L~Ls~N~l~~l~~~~~~l~~ 215 (317)
T 3o53_A 147 QYLDLKLNEIDTVNFAE--------LAASSDTLEHLNLQYNFIYDVKGQV---VFAKLKTLDLSSNKLAFMGPEFQSAAG 215 (317)
T ss_dssp EEEECTTSCCCEEEGGG--------GGGGTTTCCEEECTTSCCCEEECCC---CCTTCCEEECCSSCCCEECGGGGGGTT
T ss_pred CEEECCCCCCCcccHHH--------HhhccCcCCEEECCCCcCccccccc---ccccCCEEECCCCcCCcchhhhcccCc
Confidence 55555555544311100 0113455666666665555444332 256666666666666554445666666
Q ss_pred cceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCcccccccccEEeecCCccccccCCC
Q 045318 796 LKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVFPQLQELSLVRCSKLLGRLPE 872 (1388)
Q Consensus 796 L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~L~~L~l~~C~~L~~~~p~ 872 (1388)
|+.|++++|... .++..+. .+++|+.|.+.+.+-...+. ......+++|+.|++.+|+.+++..|.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~------~l~~L~~L~l~~N~~~~~~~----~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALR------FSQNLEHFDLRGNGFHCGTL----RDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSCCC-EECTTCC------CCTTCCEEECTTCCCBHHHH----HHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCccc-chhhHhh------cCCCCCEEEccCCCccCcCH----HHHHhccccceEEECCCchhccCCchh
Confidence 666666666433 3443321 25566666666554321111 112345788888888887888766554
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.65 E-value=3.1e-18 Score=208.11 Aligned_cols=93 Identities=20% Similarity=0.018 Sum_probs=54.0
Q ss_pred ccCCCcceEEEeeeeeeeecccC-Ccccc-CCCCccEEEEcCCCchh----hhhhhHhhhhhhcCCCCcceEEEecCCCC
Q 045318 939 QELPILEELAICNTKVTYLWQTG-SGLLQ-DISSLHKLEIGNCPELL----SLVAAEEADQQQQGLPCRLHYLELRSCPS 1012 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~-~~~~~-~l~~L~~L~l~~~~~l~----~l~~~~~~~~~~~~~l~~L~~L~L~~~~~ 1012 (1388)
..+++|++|++++|.+....... ...+. ..++|+.|++++|..-. .++.. +..+++|++|++++|++
T Consensus 338 ~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~-------l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 338 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT-------LLANHSLRELDLSNNCL 410 (461)
T ss_dssp HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH-------HHHCCCCCEEECCSSSC
T ss_pred hhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH-------HHhCCCccEEECCCCCC
Confidence 45678888888888766542210 01121 25788999998874321 23322 33477899999999977
Q ss_pred ccccccc----c-cCCCccceEEEccCCCCc
Q 045318 1013 LVKLPQT----L-LSLSSLRQLKISECHSMK 1038 (1388)
Q Consensus 1013 ~~~~p~~----~-~~l~~L~~L~l~~~~~l~ 1038 (1388)
...-... + ....+|+.|.+.++....
T Consensus 411 ~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 411 GDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 6432111 1 123467777777765443
No 63
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.65 E-value=4.7e-16 Score=186.66 Aligned_cols=198 Identities=24% Similarity=0.230 Sum_probs=116.8
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcc-hhhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLC-ADMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~ 641 (1388)
+.+++|+|++|.+..++ ..|.++.+|++|+|++|.|..++ ..+.++++|++|+|++|.. ..+| ..|..+++|++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~ 142 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELW 142 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCC-SSCCTTTSCSCSSCCEEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcC-CeeCHhHhhccccCceee
Confidence 45777888888777665 67777888888888888777764 5677788888888887743 3444 3577788888888
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
+++|.+....+..+..+++|++|..... ..........+.++++|+.|+++
T Consensus 143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~-----------------------------~~l~~i~~~~~~~l~~L~~L~L~ 193 (440)
T 3zyj_A 143 LRNNPIESIPSYAFNRIPSLRRLDLGEL-----------------------------KRLSYISEGAFEGLSNLRYLNLA 193 (440)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCC-----------------------------TTCCEECTTTTTTCSSCCEEECT
T ss_pred CCCCcccccCHHHhhhCcccCEeCCCCC-----------------------------CCcceeCcchhhcccccCeecCC
Confidence 8877743322335666666665521100 00011112234556666777776
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCccee
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANF-PIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHL 799 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 799 (1388)
+|.+... ..+..+++|+.|+++++....+ |..+. .+++|++|++++|.+....+ .+..+++|+.|
T Consensus 194 ~n~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 260 (440)
T 3zyj_A 194 MCNLREI-----------PNLTPLIKLDELDLSGNHLSAIRPGSFQ--GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEI 260 (440)
T ss_dssp TSCCSSC-----------CCCTTCSSCCEEECTTSCCCEECTTTTT--TCTTCCEEECTTCCCCEECTTSSTTCTTCCEE
T ss_pred CCcCccc-----------cccCCCcccCEEECCCCccCccChhhhc--cCccCCEEECCCCceeEEChhhhcCCCCCCEE
Confidence 6655431 1244455566666655554444 22332 25566666666665554433 45556666666
Q ss_pred eccCCc
Q 045318 800 SIIGMA 805 (1388)
Q Consensus 800 ~L~~~~ 805 (1388)
+|++|.
T Consensus 261 ~L~~N~ 266 (440)
T 3zyj_A 261 NLAHNN 266 (440)
T ss_dssp ECTTSC
T ss_pred ECCCCC
Confidence 666653
No 64
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.65 E-value=4.1e-16 Score=187.93 Aligned_cols=198 Identities=25% Similarity=0.228 Sum_probs=126.3
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.|++|+|++|.|+.++ ..|+++.+|++|+|++|.|..++ ..+.++++|++|+|++|......+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 46788888888888764 67888888888888888888774 67788888888888887544333345778888888888
Q ss_pred CCCCCcccCc-CCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 643 YNVPLLEGMP-LRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 643 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
++|.+. .+| ..+.++++|+.|..... .. ........+.++++|+.|+++
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~--------------~~---------------l~~i~~~~~~~l~~L~~L~L~ 204 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGEL--------------KK---------------LEYISEGAFEGLFNLKYLNLG 204 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCC--------------TT---------------CCEECTTTTTTCTTCCEEECT
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCC--------------CC---------------ccccChhhccCCCCCCEEECC
Confidence 888743 444 35666666666621110 00 011112245566777777777
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCccee
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANF-PIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHL 799 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 799 (1388)
+|.+... ..+..+++|+.|+++++....+ |.++. .+++|++|++++|.+....+ .+..+++|+.|
T Consensus 205 ~n~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 271 (452)
T 3zyi_A 205 MCNIKDM-----------PNLTPLVGLEELEMSGNHFPEIRPGSFH--GLSSLKKLWVMNSQVSLIERNAFDGLASLVEL 271 (452)
T ss_dssp TSCCSSC-----------CCCTTCTTCCEEECTTSCCSEECGGGGT--TCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCccccc-----------ccccccccccEEECcCCcCcccCccccc--CccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence 7766542 1245556666777766665554 33343 36677777777776655444 46666777777
Q ss_pred eccCCc
Q 045318 800 SIIGMA 805 (1388)
Q Consensus 800 ~L~~~~ 805 (1388)
+|++|.
T Consensus 272 ~L~~N~ 277 (452)
T 3zyi_A 272 NLAHNN 277 (452)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 776664
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.64 E-value=1.9e-16 Score=180.66 Aligned_cols=80 Identities=16% Similarity=0.159 Sum_probs=66.6
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
..++.++++.+.+...+ ..+..+++|++|+|++|.+..++ ..++++++|++|++++|.... .++ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-TLD-LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-EEE-ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-chh-hhhcCCCCEEEC
Confidence 35777888888887665 44567789999999999999885 689999999999999986544 343 999999999999
Q ss_pred CCCC
Q 045318 643 YNVP 646 (1388)
Q Consensus 643 ~~~~ 646 (1388)
++|.
T Consensus 88 s~n~ 91 (317)
T 3o53_A 88 NNNY 91 (317)
T ss_dssp CSSE
T ss_pred cCCc
Confidence 9987
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.64 E-value=2.1e-16 Score=179.90 Aligned_cols=202 Identities=19% Similarity=0.196 Sum_probs=139.0
Q ss_pred cCceeeEEEeCCcccc-cccccc--ccCcccceeeccCccccccccchhcc-----cccceeecCCCcchhhcchhhccc
Q 045318 563 KLQCLRVLCLREYNIC-KISNTI--GDLKHLRHLDLSETLIETLPESVNTL-----YNLHTLLLESCSRLKKLCADMGNL 634 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~L~~~~~~~~lp~~i~~L 634 (1388)
.++.|++|+|++|.++ .+|..+ +.+++|++|+|++|.+..+|..++.+ ++|++|++++|......|..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5777888888888776 566655 77778888888888777777777776 778888887776555455677778
Q ss_pred CCCCeeecCCCCCccc--CcCCC--CCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCc--hhhhhhh
Q 045318 635 IKLRHLNNYNVPLLEG--MPLRI--GHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDS--GDARDAE 708 (1388)
Q Consensus 635 ~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~--~~~~~~~ 708 (1388)
++|++|++++|.+... +|..+ +.+++|++|. +..+... .......
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~-----------------------------L~~N~l~~~~~~~~~~ 223 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLA-----------------------------LRNAGMETPSGVCSAL 223 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEE-----------------------------CTTSCCCCHHHHHHHH
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEE-----------------------------CCCCcCcchHHHHHHH
Confidence 8888888877764332 23233 5556665551 1111111 1222234
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC
Q 045318 709 LNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP 788 (1388)
Q Consensus 709 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 788 (1388)
+..+++|+.|++++|.+.+..+. ..+..+++|+.|+++++....+|.++. ++|++|++++|.+.+. |
T Consensus 224 ~~~l~~L~~L~Ls~N~l~~~~~~--------~~~~~l~~L~~L~Ls~N~l~~ip~~~~----~~L~~L~Ls~N~l~~~-p 290 (312)
T 1wwl_A 224 AAARVQLQGLDLSHNSLRDAAGA--------PSCDWPSQLNSLNLSFTGLKQVPKGLP----AKLSVLDLSYNRLDRN-P 290 (312)
T ss_dssp HHTTCCCSEEECTTSCCCSSCCC--------SCCCCCTTCCEEECTTSCCSSCCSSCC----SEEEEEECCSSCCCSC-C
T ss_pred HhcCCCCCEEECCCCcCCcccch--------hhhhhcCCCCEEECCCCccChhhhhcc----CCceEEECCCCCCCCC-h
Confidence 45678899999998887764321 123446789999999888888887764 6899999999887665 6
Q ss_pred CCCCCCCcceeeccCCcC
Q 045318 789 SIGQLPALKHLSIIGMAL 806 (1388)
Q Consensus 789 ~l~~l~~L~~L~L~~~~~ 806 (1388)
.+..+++|++|++++|+.
T Consensus 291 ~~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 291 SPDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CTTTSCEEEEEECTTCTT
T ss_pred hHhhCCCCCEEeccCCCC
Confidence 688889999999988854
No 67
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.64 E-value=5.9e-16 Score=176.11 Aligned_cols=98 Identities=20% Similarity=0.156 Sum_probs=68.5
Q ss_pred ceeeEEEeCCccccccccc-cccCcccceeeccCcccccc---ccchhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 565 QCLRVLCLREYNICKISNT-IGDLKHLRHLDLSETLIETL---PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
+.|++|+|++|.++.+|.. +.++++|++|+|++|.+..+ |..+..+++|++|++++|. +..+|..+..+++|++|
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L 106 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 106 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEE
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEE
Confidence 4678888888888877753 67888888888888877655 5667777888888888774 44567777788888888
Q ss_pred ecCCCCCcccCc--CCCCCCCCCCCC
Q 045318 641 NNYNVPLLEGMP--LRIGHLSCLQTL 664 (1388)
Q Consensus 641 ~l~~~~~~~~~p--~~i~~L~~L~~L 664 (1388)
++++|. +..++ ..+..+++|++|
T Consensus 107 ~l~~n~-l~~~~~~~~~~~l~~L~~L 131 (306)
T 2z66_A 107 DFQHSN-LKQMSEFSVFLSLRNLIYL 131 (306)
T ss_dssp ECTTSE-EESSTTTTTTTTCTTCCEE
T ss_pred ECCCCc-ccccccchhhhhccCCCEE
Confidence 888776 33333 234455544444
No 68
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.63 E-value=7.9e-16 Score=184.68 Aligned_cols=224 Identities=17% Similarity=0.141 Sum_probs=162.3
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCcccccccc-chhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPE-SVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 613 (1388)
++++.| +++.|.+....+..|..+++|++|+|++|.+..++ ..|.++.+|++|+|++|.++.+|. .+..+++|
T Consensus 64 ~~l~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 138 (440)
T 3zyj_A 64 TNTRLL-----NLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKL 138 (440)
T ss_dssp TTCSEE-----ECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSC
T ss_pred CCCcEE-----EccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccC
Confidence 567777 45666666666677788888999999999888776 678888999999999998888865 58888999
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcC-CCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPL-RIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
++|+|++|......+..+.++++|++|++++|.....++. .+..+++|++|.. ..+
T Consensus 139 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L---~~n-------------------- 195 (440)
T 3zyj_A 139 KELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNL---AMC-------------------- 195 (440)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEEC---TTS--------------------
T ss_pred ceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecC---CCC--------------------
Confidence 9999988864444445788889999999988665666664 4667777776621 110
Q ss_pred ecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSN 772 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 772 (1388)
.+... ..+..+++|+.|+|++|.+....+ ..+..+++|+.|+++++....++..... .+++
T Consensus 196 -~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~ 256 (440)
T 3zyj_A 196 -NLREI--------PNLTPLIKLDELDLSGNHLSAIRP---------GSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQS 256 (440)
T ss_dssp -CCSSC--------CCCTTCSSCCEEECTTSCCCEECT---------TTTTTCTTCCEEECTTCCCCEECTTSST-TCTT
T ss_pred -cCccc--------cccCCCcccCEEECCCCccCccCh---------hhhccCccCCEEECCCCceeEEChhhhc-CCCC
Confidence 01100 124566788888888887665322 2356678888888888887766543322 4899
Q ss_pred ccEEeeecCCCCCCCC-CCCCCCCcceeeccCCcC
Q 045318 773 LELLRFENCAMCTSLP-SIGQLPALKHLSIIGMAL 806 (1388)
Q Consensus 773 L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~~ 806 (1388)
|+.|+|++|.+....+ .+..+++|+.|+|++|+.
T Consensus 257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 9999999998876555 478899999999999863
No 69
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.62 E-value=8.6e-16 Score=185.08 Aligned_cols=222 Identities=16% Similarity=0.138 Sum_probs=162.1
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccc-hhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPES-VNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 613 (1388)
++++.| +++.|.+....+..|..+++|++|+|++|.++.++ ..|.++.+|++|+|++|.+..+|.. +..+++|
T Consensus 75 ~~l~~L-----~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 149 (452)
T 3zyi_A 75 SNTRYL-----NLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKL 149 (452)
T ss_dssp TTCSEE-----ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTC
T ss_pred CCccEE-----ECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCC
Confidence 567777 46666776666777888899999999999988776 6788899999999999999888654 7889999
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcC-CCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPL-RIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
++|+|++|......+..+.++++|++|++++|..+..++. .+..+++|++|.. ..+
T Consensus 150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L---~~n-------------------- 206 (452)
T 3zyi_A 150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNL---GMC-------------------- 206 (452)
T ss_dssp CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEEC---TTS--------------------
T ss_pred CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEEC---CCC--------------------
Confidence 9999998864433345788899999999988766666664 4667777766621 110
Q ss_pred ecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCC-cccCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFP-IWLGDSTFS 771 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p-~~~~~~~l~ 771 (1388)
.+... ..+..+++|+.|++++|.+.+..+ ..+..+++|+.|+++++....++ ..+. .++
T Consensus 207 -~l~~~--------~~~~~l~~L~~L~Ls~N~l~~~~~---------~~~~~l~~L~~L~L~~n~l~~~~~~~~~--~l~ 266 (452)
T 3zyi_A 207 -NIKDM--------PNLTPLVGLEELEMSGNHFPEIRP---------GSFHGLSSLKKLWVMNSQVSLIERNAFD--GLA 266 (452)
T ss_dssp -CCSSC--------CCCTTCTTCCEEECTTSCCSEECG---------GGGTTCTTCCEEECTTSCCCEECTTTTT--TCT
T ss_pred -ccccc--------ccccccccccEEECcCCcCcccCc---------ccccCccCCCEEEeCCCcCceECHHHhc--CCC
Confidence 11110 124556778888888887665322 23556778888888888776554 3443 488
Q ss_pred CccEEeeecCCCCCCCC-CCCCCCCcceeeccCCc
Q 045318 772 NLELLRFENCAMCTSLP-SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 772 ~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 805 (1388)
+|+.|+|++|.+....+ .+..+++|+.|++++|+
T Consensus 267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 99999999998876554 47889999999999985
No 70
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.61 E-value=5e-17 Score=204.65 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=49.9
Q ss_pred ccCCCcceEEEeeeeeeeecccCC-ccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccc
Q 045318 939 QELPILEELAICNTKVTYLWQTGS-GLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLP 1017 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~~-~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 1017 (1388)
..+++|++|++++|.++....... .....+++|++|++++|. ..+.... .......+++|++|++++|.....+|
T Consensus 153 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~--l~~l~~~~~~L~~L~L~~~~~~~~l~ 228 (594)
T 2p1m_B 153 ATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSA--LERLVTRCPNLKSLKLNRAVPLEKLA 228 (594)
T ss_dssp HHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHH--HHHHHHHCTTCCEEECCTTSCHHHHH
T ss_pred HhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHH--HHHHHHhCCCCcEEecCCCCcHHHHH
Confidence 346677777777776554322111 122355677777777664 1111100 00001125667777777775555566
Q ss_pred ccccCCCccceEEEccCC
Q 045318 1018 QTLLSLSSLRQLKISECH 1035 (1388)
Q Consensus 1018 ~~~~~l~~L~~L~l~~~~ 1035 (1388)
..+..+++|+.|++++|.
T Consensus 229 ~~~~~~~~L~~L~l~~~~ 246 (594)
T 2p1m_B 229 TLLQRAPQLEELGTGGYT 246 (594)
T ss_dssp HHHHHCTTCSEEECSBCC
T ss_pred HHHhcCCcceEccccccc
Confidence 666667777777766553
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.60 E-value=1.1e-15 Score=184.83 Aligned_cols=79 Identities=20% Similarity=0.209 Sum_probs=50.0
Q ss_pred ccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 562 LKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
..+++|++|+|++|.++.+| ..|+.+++|++|+|++|.+..++. ++.+++|++|+|++|. +..+| ..++|++|
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~----~~~~L~~L 104 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIETL 104 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEE----ECTTCCEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCC----CCCCcCEE
Confidence 34446777777777777664 567777777777777777765544 6677777777777663 33333 22556666
Q ss_pred ecCCCC
Q 045318 641 NNYNVP 646 (1388)
Q Consensus 641 ~l~~~~ 646 (1388)
++++|.
T Consensus 105 ~L~~N~ 110 (487)
T 3oja_A 105 HAANNN 110 (487)
T ss_dssp ECCSSC
T ss_pred ECcCCc
Confidence 665554
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.59 E-value=6.8e-17 Score=203.44 Aligned_cols=368 Identities=17% Similarity=0.125 Sum_probs=181.5
Q ss_pred ccCCCcceEEEeeeeeeeecccCCcccc-CCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccc--
Q 045318 939 QELPILEELAICNTKVTYLWQTGSGLLQ-DISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVK-- 1015 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~-- 1015 (1388)
..+++|++|++++|.++.... ..+. .+++|++|++++|..+....... ....+++|++|++++|.....
T Consensus 102 ~~~~~L~~L~L~~~~~~~~~~---~~l~~~~~~L~~L~L~~~~~~~~~~l~~-----~~~~~~~L~~L~L~~~~i~~~~~ 173 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTDDCL---ELIAKSFKNFKVLVLSSCEGFSTDGLAA-----IAATCRNLKELDLRESDVDDVSG 173 (594)
T ss_dssp HHCTTCCEEEEESCBCCHHHH---HHHHHHCTTCCEEEEESCEEEEHHHHHH-----HHHHCTTCCEEECTTCEEECCCG
T ss_pred HhCCCCCeEEeeCcEEcHHHH---HHHHHhCCCCcEEeCCCcCCCCHHHHHH-----HHHhCCCCCEEeCcCCccCCcch
Confidence 567889999999887654322 1232 57899999999987655421111 022477899999999874433
Q ss_pred --ccccccCCCccceEEEccCC-CCc-cChhhhccCCCCCccceeeccCCCccccccc-cCCCCccEEEeecCc------
Q 045318 1016 --LPQTLLSLSSLRQLKISECH-SMK-SLPEALMHNDNAPLESLNVVDCNSLTYIARV-QLPPSLKLLHIQSCH------ 1084 (1388)
Q Consensus 1016 --~p~~~~~l~~L~~L~l~~~~-~l~-~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~sL~~L~l~~c~------ 1084 (1388)
++.....+++|++|++++|. ... .....+. ..+++|++|++.+|..+..++.. ...++|++|++..|.
T Consensus 174 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~-~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~ 252 (594)
T 2p1m_B 174 HWLSHFPDTYTSLVSLNISCLASEVSFSALERLV-TRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPD 252 (594)
T ss_dssp GGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHH-HHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHH
T ss_pred HHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHH-HhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchh
Confidence 33333467799999999886 111 1111111 22678999999988666654432 335788888765553
Q ss_pred -------------CcccchhhhhhccCCCCCCCCCCCCccccccceeecCCCCCcccc--cCCCCCCcccCceeEecCCC
Q 045318 1085 -------------DLRTLIDEDQISGMKKDGDIPSGSSSYTCLLERLHIEDCPSLTSL--FSLKGLPATLEDIKVKNCSK 1149 (1388)
Q Consensus 1085 -------------~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~~L~l~~c~~l~~l--~~~~~~~~sL~~L~l~~c~~ 1149 (1388)
+|+.+. .+... ..+.+|.....+++ |++|++++|. ++.- .......++|+.|++++|..
T Consensus 253 ~~~~l~~~l~~~~~L~~Ls---~~~~~-~~~~l~~~~~~~~~-L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~ 326 (594)
T 2p1m_B 253 VYSGLSVALSGCKELRCLS---GFWDA-VPAYLPAVYSVCSR-LTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIE 326 (594)
T ss_dssp HHHHHHHHHHTCTTCCEEE---CCBTC-CGGGGGGGHHHHTT-CCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGH
T ss_pred hHHHHHHHHhcCCCccccc---CCccc-chhhHHHHHHhhCC-CCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccC
Confidence 232210 00000 00111211112333 7888888776 4431 11122334578888877621
Q ss_pred ccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccchh-hhhhhccccceEeecCCCCccccC-CcC--CcC
Q 045318 1150 LLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAV-QFLKFYLKLTMLDINGCEKLMALP-NNL--HQF 1225 (1388)
Q Consensus 1150 l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~-~~l~~l~~L~~L~l~~~~~L~~l~-~~~--~~~ 1225 (1388)
-..+......+++|++|++.+|.... ..... .+...+. .+...+++|++|.+ +|+.++... ..+ ..+
T Consensus 327 ~~~l~~l~~~~~~L~~L~L~~~~~~g-----~~~~~---~l~~~~l~~l~~~~~~L~~L~~-~~~~l~~~~~~~l~~~~~ 397 (594)
T 2p1m_B 327 DAGLEVLASTCKDLRELRVFPSEPFV-----MEPNV---ALTEQGLVSVSMGCPKLESVLY-FCRQMTNAALITIARNRP 397 (594)
T ss_dssp HHHHHHHHHHCTTCCEEEEECSCTTC-----SSCSS---CCCHHHHHHHHHHCTTCCEEEE-EESCCCHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCCEEEEecCcccc-----cccCC---CCCHHHHHHHHHhchhHHHHHH-hcCCcCHHHHHHHHhhCC
Confidence 11111111224677777775542110 00000 0111111 12234667777744 334443221 111 125
Q ss_pred ccceEEec-----cCCCCcccCCC-------CCCCccceeecccccCCcchhcccccccCccceeEecCCCCCccccCcc
Q 045318 1226 SIEILLIQ-----DCPSLGSFTAD-------CFPTKVSALGIDYLTIHKPFFELGLRRFTSLRELRLYGGSRDVVAFPPE 1293 (1388)
Q Consensus 1226 ~L~~L~l~-----~c~~l~~~~~~-------~~~~~L~~L~l~~~~l~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 1293 (1388)
+|+.|++. +|..++..|.. .-.++|+.|++++ .+.+.........+++|+.|+|++|......++.-
T Consensus 398 ~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l 476 (594)
T 2p1m_B 398 NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476 (594)
T ss_dssp TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHH
T ss_pred CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHH
Confidence 67777776 45555533321 1124566666654 33322222111235666666666643211111110
Q ss_pred cccccCCCccceeecccCCCCCCcc---CCCCCCCcCcEeecCCC
Q 045318 1294 DTKMALPASLTFLWIDNFPNLLRLS---SIENLTSLQFLRFRNCP 1335 (1388)
Q Consensus 1294 ~~~~~~~~sL~~L~l~~~~~l~~l~---~~~~l~~L~~L~l~~c~ 1335 (1388)
...+++|+.|++++|+. +... .+..+++|++|++++|+
T Consensus 477 ---~~~~~~L~~L~L~~n~~-~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 477 ---LSGCDSLRKLEIRDCPF-GDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp ---HHHCTTCCEEEEESCSC-CHHHHHHTGGGGGGSSEEEEESSC
T ss_pred ---HhcCCCcCEEECcCCCC-cHHHHHHHHHhCCCCCEEeeeCCC
Confidence 01245566666666653 2221 23345666666666664
No 73
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.59 E-value=1.2e-15 Score=171.34 Aligned_cols=202 Identities=21% Similarity=0.194 Sum_probs=131.6
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhc-chhhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKL-CADMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~l-p~~i~~L~~L~~L~ 641 (1388)
+.|++|++++|.++.+| ..+..+.+|++|+|++|.+..+ |..+..+++|++|++++|..+..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 46777777777777666 4577777777777777777766 666777777777777777534444 56677777777777
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
+++|.+....|..++.+++|++|.... +.+. ......+..+++|+.|+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~------------------------n~l~------~~~~~~~~~l~~L~~L~l~ 161 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQD------------------------NALQ------ALPDDTFRDLGNLTHLFLH 161 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCS------------------------SCCC------CCCTTTTTTCTTCCEEECC
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCC------------------------Cccc------ccCHhHhccCCCccEEECC
Confidence 777774443345566666666551110 0010 0112235556677777777
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCccee
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANF-PIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHL 799 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L 799 (1388)
+|.+....+ ..+..+++|+.|+++++....+ |.++.. +++|+.|++++|.+....+ .+..+++|+.|
T Consensus 162 ~n~l~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 230 (285)
T 1ozn_A 162 GNRISSVPE---------RAFRGLHSLDRLLLHQNRVAHVHPHAFRD--LGRLMTLYLFANNLSALPTEALAPLRALQYL 230 (285)
T ss_dssp SSCCCEECT---------TTTTTCTTCCEEECCSSCCCEECTTTTTT--CTTCCEEECCSSCCSCCCHHHHTTCTTCCEE
T ss_pred CCcccccCH---------HHhcCccccCEEECCCCcccccCHhHccC--cccccEeeCCCCcCCcCCHHHcccCcccCEE
Confidence 776554211 1245567778888877776555 555543 7889999999998776544 47888999999
Q ss_pred eccCCcCc
Q 045318 800 SIIGMALV 807 (1388)
Q Consensus 800 ~L~~~~~~ 807 (1388)
++++|+..
T Consensus 231 ~l~~N~~~ 238 (285)
T 1ozn_A 231 RLNDNPWV 238 (285)
T ss_dssp ECCSSCEE
T ss_pred eccCCCcc
Confidence 99988643
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.58 E-value=1.8e-15 Score=182.79 Aligned_cols=217 Identities=17% Similarity=0.120 Sum_probs=156.8
Q ss_pred CCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhccccc
Q 045318 534 DCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNL 613 (1388)
Q Consensus 534 ~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L 613 (1388)
.+++|+.| +++.|.+....+..|..+++|++|+|++|.++.+++ ++.+++|++|+|++|.|..+|.. ++|
T Consensus 32 ~~~~L~~L-----~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~L 101 (487)
T 3oja_A 32 SAWNVKEL-----DLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PSI 101 (487)
T ss_dssp TGGGCCEE-----ECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TTC
T ss_pred cCCCccEE-----EeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CCc
Confidence 45588888 467777777667788999999999999999987765 99999999999999999988753 899
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEee
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKIS 693 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~ 693 (1388)
++|++++|.... +|. ..+++|++|++++|.+....|..++.+++|++|.
T Consensus 102 ~~L~L~~N~l~~-~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---------------------------- 150 (487)
T 3oja_A 102 ETLHAANNNISR-VSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD---------------------------- 150 (487)
T ss_dssp CEEECCSSCCCC-EEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE----------------------------
T ss_pred CEEECcCCcCCC-CCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE----------------------------
Confidence 999999986544 332 3578999999999996555566777777777662
Q ss_pred cccCCCCchhhhhhhc-CCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCC
Q 045318 694 RLENVKDSGDARDAEL-NGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSN 772 (1388)
Q Consensus 694 ~l~~~~~~~~~~~~~l-~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 772 (1388)
+..+...+.. +..+ ..+++|+.|+|++|.+.+. .....+++|+.|+++++....+|..+.. +++
T Consensus 151 -Ls~N~l~~~~-~~~l~~~l~~L~~L~Ls~N~l~~~-----------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~ 215 (487)
T 3oja_A 151 -LKLNEIDTVN-FAELAASSDTLEHLNLQYNFIYDV-----------KGQVVFAKLKTLDLSSNKLAFMGPEFQS--AAG 215 (487)
T ss_dssp -CTTSCCCEEE-GGGGGGGTTTCCEEECTTSCCCEE-----------ECCCCCTTCCEEECCSSCCCEECGGGGG--GTT
T ss_pred -CCCCCCCCcC-hHHHhhhCCcccEEecCCCccccc-----------cccccCCCCCEEECCCCCCCCCCHhHcC--CCC
Confidence 1111111111 2223 3567888888888876652 2233466777777777777777666543 677
Q ss_pred ccEEeeecCCCCCCCCCCCCCCCcceeeccCCcC
Q 045318 773 LELLRFENCAMCTSLPSIGQLPALKHLSIIGMAL 806 (1388)
Q Consensus 773 L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~~~~~ 806 (1388)
|+.|++++|.+....+.++.+++|+.|++++|+.
T Consensus 216 L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l 249 (487)
T 3oja_A 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGF 249 (487)
T ss_dssp CSEEECTTSCCCEECTTCCCCTTCCEEECTTCCB
T ss_pred ccEEEecCCcCcccchhhccCCCCCEEEcCCCCC
Confidence 7888888777765444567777777777777753
No 75
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.58 E-value=1.1e-14 Score=163.41 Aligned_cols=195 Identities=19% Similarity=0.184 Sum_probs=138.6
Q ss_pred eEEEeCCccccccccccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
++++.+++.++.+|..+ ..+|++|+|++|.++.+| ..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 67899999999999755 579999999999999986 579999999999999986655558889999999999999997
Q ss_pred CcccC-cCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCC
Q 045318 647 LLEGM-PLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNS 725 (1388)
Q Consensus 647 ~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 725 (1388)
.+..+ |..++.+++|++|... .+... ...+..+..+++|+.|++++|.+
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~-----------------------------~n~l~-~~~~~~~~~l~~L~~L~l~~n~l 141 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLD-----------------------------RCGLQ-ELGPGLFRGLAALQYLYLQDNAL 141 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECT-----------------------------TSCCC-CCCTTTTTTCTTCCEEECCSSCC
T ss_pred CccccCHHHhcCCcCCCEEECC-----------------------------CCcCC-EECHhHhhCCcCCCEEECCCCcc
Confidence 44444 5667777777766211 01000 11123466778888888888876
Q ss_pred CCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcc-cCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeeccC
Q 045318 726 SGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIW-LGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSIIG 803 (1388)
Q Consensus 726 ~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~-~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~ 803 (1388)
....+ ..+..+++|+.|+++++....+|.. +. .+++|++|++++|.+....| .++.+++|+.|++++
T Consensus 142 ~~~~~---------~~~~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 210 (285)
T 1ozn_A 142 QALPD---------DTFRDLGNLTHLFLHGNRISSVPERAFR--GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFA 210 (285)
T ss_dssp CCCCT---------TTTTTCTTCCEEECCSSCCCEECTTTTT--TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred cccCH---------hHhccCCCccEEECCCCcccccCHHHhc--CccccCEEECCCCcccccCHhHccCcccccEeeCCC
Confidence 65322 1244566777777777766655543 33 36677777777776665544 566777777777776
Q ss_pred Cc
Q 045318 804 MA 805 (1388)
Q Consensus 804 ~~ 805 (1388)
|.
T Consensus 211 n~ 212 (285)
T 1ozn_A 211 NN 212 (285)
T ss_dssp SC
T ss_pred Cc
Confidence 64
No 76
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=8.8e-16 Score=174.68 Aligned_cols=225 Identities=16% Similarity=0.107 Sum_probs=143.5
Q ss_pred cCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccc--ccccccc-------cCcccceeeccCcccc-c
Q 045318 533 SDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNIC--KISNTIG-------DLKHLRHLDLSETLIE-T 602 (1388)
Q Consensus 533 ~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~ 602 (1388)
...++|+.|. ++.+.+ .+|..+... |++|+|++|.+. .+|..+. ++.+|++|+|++|.+. .
T Consensus 40 ~~~~~L~~l~-----l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 110 (312)
T 1wwl_A 40 GGGRSLEYLL-----KRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGT 110 (312)
T ss_dssp EEEEECTTHH-----HHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSC
T ss_pred ccCCCceeEe-----eccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccch
Confidence 3445566653 334444 334434322 888899999886 4566565 7899999999999998 6
Q ss_pred cccch--hcccccceeecCCCcchhhcchhhccc-----CCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCC
Q 045318 603 LPESV--NTLYNLHTLLLESCSRLKKLCADMGNL-----IKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGS 675 (1388)
Q Consensus 603 lp~~i--~~L~~L~~L~L~~~~~~~~lp~~i~~L-----~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~ 675 (1388)
+|..+ +.+++|++|++++|.... .|..++.+ ++|++|++++|.+....|..++.+++|++|.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~---------- 179 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD---------- 179 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSS-SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEE----------
T ss_pred hHHHHHHhcCCCccEEEccCCCCcc-hhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEE----------
Confidence 78876 899999999999986444 48888877 8999999999985544446788888777762
Q ss_pred CcccccccccccceeEeecccCCCCchh-hhhhh--cCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEE
Q 045318 676 QLRELKFLENLQVKLKISRLENVKDSGD-ARDAE--LNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLA 752 (1388)
Q Consensus 676 ~~~~l~~L~~L~~~L~i~~l~~~~~~~~-~~~~~--l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~ 752 (1388)
+..+...+. ..+.. +..+++|+.|++++|.+... .......+..+++|+.|+
T Consensus 180 -------------------Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~------~~~~~~~~~~l~~L~~L~ 234 (312)
T 1wwl_A 180 -------------------LSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP------SGVCSALAAARVQLQGLD 234 (312)
T ss_dssp -------------------CCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH------HHHHHHHHHTTCCCSEEE
T ss_pred -------------------CCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch------HHHHHHHHhcCCCCCEEE
Confidence 111211111 11222 26778888898888876531 001111123456777777
Q ss_pred EeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeeccCCc
Q 045318 753 IRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 753 l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L~~~~ 805 (1388)
++++.....+..-....+++|++|++++|.+. .+| .+. ++|++|++++|.
T Consensus 235 Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~ 285 (312)
T 1wwl_A 235 LSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNR 285 (312)
T ss_dssp CTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSC
T ss_pred CCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCC
Confidence 77777655431111113567777777777766 344 333 677777777764
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.57 E-value=6.5e-15 Score=164.56 Aligned_cols=205 Identities=18% Similarity=0.102 Sum_probs=138.4
Q ss_pred ceeeEEEeCCcccccccc-ccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKISN-TIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.|++|++++|.++.++. .+.++.+|++|+|++|.+..+|. .+.++++|++|++++|......|..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 357888888888887764 77888888888888888887754 6788888888888887655445567888888888888
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|.+....+..++.+++|++|... .+.......+..+..+++|+.|++++
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~-----------------------------~n~l~~~~l~~~~~~l~~L~~L~Ls~ 158 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVA-----------------------------HNLIQSFKLPEYFSNLTNLEHLDLSS 158 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECC-----------------------------SSCCCCCCCCGGGGGCTTCCEEECCS
T ss_pred CCCCccccCchhcccCCCCCEEECc-----------------------------CCccceecCchhhccCCCCCEEECCC
Confidence 8887433333356666666666211 01100101123456677888888888
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcc-eEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceee
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLK-QLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLS 800 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~-~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~ 800 (1388)
|.+.+..+.. +..+..++.+. .|+++++....+|..... ..+|++|++++|.+....+ .++.+++|+.|+
T Consensus 159 N~l~~~~~~~------~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~--~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 230 (276)
T 2z62_A 159 NKIQSIYCTD------LRVLHQMPLLNLSLDLSLNPMNFIQPGAFK--EIRLKELALDTNQLKSVPDGIFDRLTSLQKIW 230 (276)
T ss_dssp SCCCEECGGG------GHHHHTCTTCCEEEECCSSCCCEECTTSSC--SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEE
T ss_pred CCCCcCCHHH------hhhhhhccccceeeecCCCcccccCccccC--CCcccEEECCCCceeecCHhHhcccccccEEE
Confidence 8776532221 11222233333 788888887777766553 4589999999998776555 468899999999
Q ss_pred ccCCcC
Q 045318 801 IIGMAL 806 (1388)
Q Consensus 801 L~~~~~ 806 (1388)
+++|+.
T Consensus 231 l~~N~~ 236 (276)
T 2z62_A 231 LHTNPW 236 (276)
T ss_dssp CCSSCB
T ss_pred ccCCcc
Confidence 999864
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=2e-14 Score=159.73 Aligned_cols=101 Identities=19% Similarity=0.165 Sum_probs=65.6
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
..++.|+.|++++|.+..++ .++.+++|++|++++|.+..+| .++.+++|++|++++|......|..++++++|++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 115 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELV 115 (272)
T ss_dssp HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred ccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEE
Confidence 34566777777777777664 4677778888888887777764 677777888888877754433344467777788888
Q ss_pred cCCCCCcccCcCCCCCCCCCCCC
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+++|.+....+..++.+++|++|
T Consensus 116 L~~n~l~~~~~~~~~~l~~L~~L 138 (272)
T 3rfs_A 116 LVENQLQSLPDGVFDKLTNLTYL 138 (272)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcCCccCHHHhccCCCCCEE
Confidence 77776332222224444444443
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=4e-14 Score=158.40 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=52.1
Q ss_pred cCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC
Q 045318 709 LNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP 788 (1388)
Q Consensus 709 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~ 788 (1388)
+..+++|+.|++++|.+....+. .+..+++|+.|+++++....+|..... .+++|+.|+|++|.+....+
T Consensus 120 ~~~l~~L~~L~L~~N~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~l~~~~~~-~l~~L~~L~L~~N~l~~ip~ 189 (290)
T 1p9a_G 120 LRGLGELQELYLKGNELKTLPPG---------LLTPTPKLEKLSLANNNLTELPAGLLN-GLENLDTLLLQENSLYTIPK 189 (290)
T ss_dssp TTTCTTCCEEECTTSCCCCCCTT---------TTTTCTTCCEEECTTSCCSCCCTTTTT-TCTTCCEEECCSSCCCCCCT
T ss_pred HcCCCCCCEEECCCCCCCccChh---------hcccccCCCEEECCCCcCCccCHHHhc-CcCCCCEEECCCCcCCccCh
Confidence 34445555555555554432211 133455666666666666666654432 36778888888877765444
Q ss_pred CCCCCCCcceeeccCCc
Q 045318 789 SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 789 ~l~~l~~L~~L~L~~~~ 805 (1388)
.+..+++|+.|++++|+
T Consensus 190 ~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 190 GFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp TTTTTCCCSEEECCSCC
T ss_pred hhcccccCCeEEeCCCC
Confidence 56667778888887775
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.54 E-value=1.7e-14 Score=163.39 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=125.8
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.++.|++|++++|.+..+| .+..+++|++|+|++|.+..+|. +..+++|++|++++|. +..+| .+..+++|++|++
T Consensus 39 ~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEEC
T ss_pred HcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEEC
Confidence 4566777777777777776 57777777777777777777766 7777777777777764 44444 5777777777777
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|. +..++. ++.+++|++|... . +.+... ..+..+++|+.|++++
T Consensus 115 ~~n~-l~~~~~-l~~l~~L~~L~l~---~---------------------n~l~~~--------~~l~~l~~L~~L~l~~ 160 (308)
T 1h6u_A 115 TSTQ-ITDVTP-LAGLSNLQVLYLD---L---------------------NQITNI--------SPLAGLTNLQYLSIGN 160 (308)
T ss_dssp TTSC-CCCCGG-GTTCTTCCEEECC---S---------------------SCCCCC--------GGGGGCTTCCEEECCS
T ss_pred CCCC-CCCchh-hcCCCCCCEEECC---C---------------------CccCcC--------ccccCCCCccEEEccC
Confidence 7776 334443 5555555555110 0 000000 0144566777777777
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeecc
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSII 802 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 802 (1388)
|.+.+. ..+..+++|+.|+++++....++. +. .+++|++|++++|.+.... .+..+++|+.|+++
T Consensus 161 n~l~~~-----------~~l~~l~~L~~L~l~~n~l~~~~~-l~--~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~ 225 (308)
T 1h6u_A 161 AQVSDL-----------TPLANLSKLTTLKADDNKISDISP-LA--SLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLT 225 (308)
T ss_dssp SCCCCC-----------GGGTTCTTCCEEECCSSCCCCCGG-GG--GCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEE
T ss_pred CcCCCC-----------hhhcCCCCCCEEECCCCccCcChh-hc--CCCCCCEEEccCCccCccc-cccCCCCCCEEEcc
Confidence 766541 114566777788887777766665 32 3788999999988776543 57888899999998
Q ss_pred CCcC
Q 045318 803 GMAL 806 (1388)
Q Consensus 803 ~~~~ 806 (1388)
+|+.
T Consensus 226 ~N~i 229 (308)
T 1h6u_A 226 NQTI 229 (308)
T ss_dssp EEEE
T ss_pred CCee
Confidence 8853
No 81
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.53 E-value=8e-14 Score=154.83 Aligned_cols=86 Identities=17% Similarity=0.202 Sum_probs=52.2
Q ss_pred CCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCC-
Q 045318 710 NGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLP- 788 (1388)
Q Consensus 710 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~- 788 (1388)
..+++|+.|++++|.+....+. .+..+++|+.|+++++....+|..... .+++|++|++++|.+....+
T Consensus 130 ~~l~~L~~L~Ls~n~l~~~~~~---------~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 130 DSLTKLTYLSLGYNELQSLPKG---------VFDKLTSLKELRLYNNQLKRVPEGAFD-KLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp TTCTTCCEEECCSSCCCCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCCSCCCTT
T ss_pred CcCcCCCEEECCCCcCCccCHh---------HccCCcccceeEecCCcCcEeChhHhc-cCCCcCEEECCCCcCCcCCHH
Confidence 3445555555555554432111 134455666666666666556543221 36788888888887765444
Q ss_pred CCCCCCCcceeeccCCc
Q 045318 789 SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 789 ~l~~l~~L~~L~L~~~~ 805 (1388)
.+..+++|+.|++++|+
T Consensus 200 ~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTTCTTCCEEECCSSC
T ss_pred HhccccCCCEEEecCCC
Confidence 47778888888888875
No 82
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=99.52 E-value=1.6e-14 Score=132.82 Aligned_cols=79 Identities=24% Similarity=0.395 Sum_probs=72.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhc--ccCcHHHHHHHHHHHHHHhhhhhHHhhhhhH
Q 045318 12 AIEMLFKKLMSADLLQFARQEQIQADLKKWERILFKIHAVLDDADEK--QMTKQSVRLWLRELKNLAYDVEDILDEFSTE 89 (1388)
Q Consensus 12 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~i~~~l~~a~~~--~~~~~~~~~wl~~lr~~~yd~ed~ld~~~~~ 89 (1388)
+++.+++||++.+.+++....||++++++|+++|..|++||.+|+.+ +..+++++.|+++||++|||+|||||+|.++
T Consensus 2 ~v~~ll~KL~~ll~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdlaYD~ED~iD~f~~~ 81 (115)
T 3qfl_A 2 AISNLIPKLGELLTEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLVQ 81 (115)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888888999999999999999999999999999999987 5579999999999999999999999999987
Q ss_pred H
Q 045318 90 A 90 (1388)
Q Consensus 90 ~ 90 (1388)
.
T Consensus 82 ~ 82 (115)
T 3qfl_A 82 V 82 (115)
T ss_dssp H
T ss_pred h
Confidence 5
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.51 E-value=1.2e-13 Score=150.47 Aligned_cols=209 Identities=13% Similarity=0.133 Sum_probs=141.1
Q ss_pred CCCcccccCCCCCCcccCceeEecCCCccccCC-CCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhc
Q 045318 1123 CPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSK-RGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFY 1201 (1388)
Q Consensus 1123 c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~-~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l 1201 (1388)
|..++.+|. ++.+|+.|+++++ .++.++. ....+++|++|++++|..++.++.... ..+
T Consensus 20 c~~l~~ip~---~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f----------------~~l 79 (239)
T 2xwt_C 20 CKDIQRIPS---LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF----------------YNL 79 (239)
T ss_dssp ECSCSSCCC---CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE----------------ESC
T ss_pred ccCccccCC---CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc----------------CCC
Confidence 344555543 4556777777663 3555544 334557777777777654665554322 345
Q ss_pred cccceEeecCCCCccccCCcC-C-cCccceEEeccCCCCcccCCCCCCCccc---eeecccc-cCCcchhcccccccCcc
Q 045318 1202 LKLTMLDINGCEKLMALPNNL-H-QFSIEILLIQDCPSLGSFTADCFPTKVS---ALGIDYL-TIHKPFFELGLRRFTSL 1275 (1388)
Q Consensus 1202 ~~L~~L~l~~~~~L~~l~~~~-~-~~~L~~L~l~~c~~l~~~~~~~~~~~L~---~L~l~~~-~l~~~~~~~~l~~l~~L 1275 (1388)
++|++|++++|+.++.++... . .++|++|++++|. ++.+|...-.++|+ .|++++| .+.. ++...+..+++|
T Consensus 80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~-i~~~~~~~l~~L 157 (239)
T 2xwt_C 80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTS-IPVNAFQGLCNE 157 (239)
T ss_dssp TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCE-ECTTTTTTTBSS
T ss_pred cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-CccccccccccccccccEEECCCCcchhh-cCcccccchhcc
Confidence 677777777766777776433 2 2677777777763 44455433335565 8888888 5542 333457788999
Q ss_pred c-eeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc--CCCCC-CCcCcEeecCCCCCccCCCCCCCCccce
Q 045318 1276 R-ELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS--SIENL-TSLQFLRFRNCPKLEYFPENGLPTSLLR 1351 (1388)
Q Consensus 1276 ~-~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~--~~~~l-~~L~~L~l~~c~~l~~l~~~~l~~sL~~ 1351 (1388)
+ .|++++| .+..+|.... ..++|+.|++++|++++.++ .+..+ ++|++|++++ ++++.+|... .++|+.
T Consensus 158 ~~~L~l~~n--~l~~i~~~~~---~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~-N~l~~l~~~~-~~~L~~ 230 (239)
T 2xwt_C 158 TLTLKLYNN--GFTSVQGYAF---NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKG-LEHLKE 230 (239)
T ss_dssp EEEEECCSC--CCCEECTTTT---TTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT-CCCCCCCCTT-CTTCSE
T ss_pred eeEEEcCCC--CCcccCHhhc---CCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC-CccccCChhH-hccCce
Confidence 9 9999884 4557776542 23789999999998788887 68888 9999999999 6889998874 479999
Q ss_pred eeeccCcch
Q 045318 1352 LQIIACPLM 1360 (1388)
Q Consensus 1352 L~i~~c~~L 1360 (1388)
|++++++.|
T Consensus 231 L~l~~~~~l 239 (239)
T 2xwt_C 231 LIARNTWTL 239 (239)
T ss_dssp EECTTC---
T ss_pred eeccCccCC
Confidence 999998764
No 84
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.48 E-value=1.7e-13 Score=155.63 Aligned_cols=206 Identities=17% Similarity=0.128 Sum_probs=151.6
Q ss_pred cCceeeEEEeCCcccc-cccccc--ccCcccceeeccCcccccc-c----cchhcccccceeecCCCcchhhcchhhccc
Q 045318 563 KLQCLRVLCLREYNIC-KISNTI--GDLKHLRHLDLSETLIETL-P----ESVNTLYNLHTLLLESCSRLKKLCADMGNL 634 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L 634 (1388)
.++.|++|++++|.+. ..|..+ +.+.+|++|+|++|.+... | ..+..+++|++|++++|......|..++.+
T Consensus 89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l 168 (310)
T 4glp_A 89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF 168 (310)
T ss_dssp HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence 3466999999999988 556777 8999999999999998853 2 345679999999999997766667889999
Q ss_pred CCCCeeecCCCCCccc--Cc--CCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcC
Q 045318 635 IKLRHLNNYNVPLLEG--MP--LRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELN 710 (1388)
Q Consensus 635 ~~L~~L~l~~~~~~~~--~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~ 710 (1388)
++|++|++++|.+... ++ ..++.+++|++|.... +.+. .........+.
T Consensus 169 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~------------------------N~l~---~l~~~~~~l~~ 221 (310)
T 4glp_A 169 PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN------------------------TGME---TPTGVCAALAA 221 (310)
T ss_dssp TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS------------------------SCCC---CHHHHHHHHHH
T ss_pred CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC------------------------CCCC---chHHHHHHHHh
Confidence 9999999999985431 32 2346778888772111 0110 00111112245
Q ss_pred CCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCC
Q 045318 711 GKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSI 790 (1388)
Q Consensus 711 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l 790 (1388)
.+++|+.|++++|.+.+..+... ..+..+++|++|+++++....+|.++ +++|+.|+|++|.+... |.+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~------~~~~~~~~L~~L~Ls~N~l~~lp~~~----~~~L~~L~Ls~N~l~~~-~~~ 290 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSA------PRCMWSSALNSLNLSFAGLEQVPKGL----PAKLRVLDLSSNRLNRA-PQP 290 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCC------SSCCCCTTCCCEECCSSCCCSCCSCC----CSCCSCEECCSCCCCSC-CCT
T ss_pred cCCCCCEEECCCCCCCccchhhH------HhccCcCcCCEEECCCCCCCchhhhh----cCCCCEEECCCCcCCCC-chh
Confidence 67899999999999877533221 22333479999999999988888776 37999999999987753 567
Q ss_pred CCCCCcceeeccCCcC
Q 045318 791 GQLPALKHLSIIGMAL 806 (1388)
Q Consensus 791 ~~l~~L~~L~L~~~~~ 806 (1388)
..+++|+.|++++|+.
T Consensus 291 ~~l~~L~~L~L~~N~l 306 (310)
T 4glp_A 291 DELPEVDNLTLDGNPF 306 (310)
T ss_dssp TSCCCCSCEECSSTTT
T ss_pred hhCCCccEEECcCCCC
Confidence 8889999999998864
No 85
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=7.1e-13 Score=153.28 Aligned_cols=221 Identities=15% Similarity=0.153 Sum_probs=119.8
Q ss_pred cceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccc--cCCCCccEE
Q 045318 1001 RLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARV--QLPPSLKLL 1078 (1388)
Q Consensus 1001 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~sL~~L 1078 (1388)
++++|+|++|.+....+..|.++++|++|+|++|+..+.+|...+ ..++++..+.+.+++.+..++.. ...++|+.|
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f-~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSB-CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHh-hcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 444455554433322223444455555555555544444433221 22344444444444444444332 223455555
Q ss_pred EeecCcCcccchhhhhhccCCCCCCCCCC-CCccccccceeecCCCCCcccccCC--CCCCcccCceeEecCCCccccCC
Q 045318 1079 HIQSCHDLRTLIDEDQISGMKKDGDIPSG-SSSYTCLLERLHIEDCPSLTSLFSL--KGLPATLEDIKVKNCSKLLFLSK 1155 (1388)
Q Consensus 1079 ~l~~c~~L~~~~~~~~l~~~~~~~~lp~~-~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~sL~~L~l~~c~~l~~l~~ 1155 (1388)
+++++. ++ .+|.. ...... +..|++.++..+..++.. ......++.|++++ +.++.++.
T Consensus 110 ~l~~n~-l~---------------~~~~~~~~~~~~-l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~ 171 (350)
T 4ay9_X 110 LISNTG-IK---------------HLPDVHKIHSLQ-KVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHN 171 (350)
T ss_dssp EEEEEC-CS---------------SCCCCTTCCBSS-CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECT
T ss_pred cccccc-cc---------------cCCchhhcccch-hhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCCh
Confidence 555542 22 12221 112222 566666666666665432 23334466777755 55666766
Q ss_pred CCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCcCccceEEeccC
Q 045318 1156 RGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQDC 1235 (1388)
Q Consensus 1156 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~~c 1235 (1388)
.....++|++|++.+++.++.+|.+.+ ..+++|++|++++ +.++++|... +..|+.|.+.++
T Consensus 172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f----------------~~l~~L~~LdLs~-N~l~~lp~~~-~~~L~~L~~l~~ 233 (350)
T 4ay9_X 172 SAFNGTQLDELNLSDNNNLEELPNDVF----------------HGASGPVILDISR-TRIHSLPSYG-LENLKKLRARST 233 (350)
T ss_dssp TSSTTEEEEEEECTTCTTCCCCCTTTT----------------TTEECCSEEECTT-SCCCCCCSSS-CTTCCEEECTTC
T ss_pred hhccccchhHHhhccCCcccCCCHHHh----------------ccCcccchhhcCC-CCcCccChhh-hccchHhhhccC
Confidence 666667788888877777777776543 4567888888887 4677777543 467778887777
Q ss_pred CCCcccCCCCCCCccceeecccc
Q 045318 1236 PSLGSFTADCFPTKVSALGIDYL 1258 (1388)
Q Consensus 1236 ~~l~~~~~~~~~~~L~~L~l~~~ 1258 (1388)
.+++.+|.-.-.++|+.++++++
T Consensus 234 ~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 234 YNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp TTCCCCCCTTTCCSCCEEECSCH
T ss_pred CCcCcCCCchhCcChhhCcCCCC
Confidence 77777775333456666666543
No 86
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.48 E-value=1.4e-13 Score=154.08 Aligned_cols=201 Identities=21% Similarity=0.120 Sum_probs=137.7
Q ss_pred ccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccchhcc
Q 045318 532 ISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPESVNTL 610 (1388)
Q Consensus 532 ~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 610 (1388)
+.++++++.+. .+.+.+. .+|..+ .+.+++|+|++|.++.++ ..+..+.+|++|+|++|.|+.+|.. +.+
T Consensus 6 ~~~l~~l~~l~-----~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l 76 (290)
T 1p9a_G 6 VSKVASHLEVN-----CDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTL 76 (290)
T ss_dssp EECSTTCCEEE-----CTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCC
T ss_pred ccccCCccEEE-----CCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCC
Confidence 34556666663 3333332 123323 256788888888888664 6788888888888888888887664 778
Q ss_pred cccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCc-CCCCCCCCCCCCCceEeccCCCCCcccccccccccce
Q 045318 611 YNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMP-LRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVK 689 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~ 689 (1388)
++|++|++++| .+..+|..+..+++|++|++++|.+ ..+| ..++.+++|++|...
T Consensus 77 ~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~l~~L~~L~L~---------------------- 132 (290)
T 1p9a_G 77 PVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVSFNRL-TSLPLGALRGLGELQELYLK---------------------- 132 (290)
T ss_dssp TTCCEEECCSS-CCSSCCCCTTTCTTCCEEECCSSCC-CCCCSSTTTTCTTCCEEECT----------------------
T ss_pred CcCCEEECCCC-cCCcCchhhccCCCCCEEECCCCcC-cccCHHHHcCCCCCCEEECC----------------------
Confidence 88888888887 4557777788888888888888874 3444 457777777766110
Q ss_pred eEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCC
Q 045318 690 LKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDST 769 (1388)
Q Consensus 690 L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~ 769 (1388)
-+.+. ...+..+..+++|+.|++++|.+....+. .+..+++|+.|+++++....+|.+++.
T Consensus 133 --~N~l~------~~~~~~~~~l~~L~~L~L~~N~l~~l~~~---------~~~~l~~L~~L~L~~N~l~~ip~~~~~-- 193 (290)
T 1p9a_G 133 --GNELK------TLPPGLLTPTPKLEKLSLANNNLTELPAG---------LLNGLENLDTLLLQENSLYTIPKGFFG-- 193 (290)
T ss_dssp --TSCCC------CCCTTTTTTCTTCCEEECTTSCCSCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTT--
T ss_pred --CCCCC------ccChhhcccccCCCEEECCCCcCCccCHH---------HhcCcCCCCEEECCCCcCCccChhhcc--
Confidence 00111 11123456678888888888887653222 245678899999999999999988875
Q ss_pred CCCccEEeeecCCCC
Q 045318 770 FSNLELLRFENCAMC 784 (1388)
Q Consensus 770 l~~L~~L~L~~~~~~ 784 (1388)
.++|+.|+|++|...
T Consensus 194 ~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 194 SHLLPFAFLHGNPWL 208 (290)
T ss_dssp TCCCSEEECCSCCBC
T ss_pred cccCCeEEeCCCCcc
Confidence 679999999999753
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.47 E-value=6.1e-15 Score=170.49 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=64.9
Q ss_pred ceeeEEEeCCccccccccccccCcccceeeccCccccc--cccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIET--LPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.+++|++++|.+...+..+..+.+|++|+|++|.+.. +|..+..+++|++|++++|......|..++.+++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 67888888888888776667778888888888887763 6777888888888888888655567777888888888888
Q ss_pred CCCC
Q 045318 643 YNVP 646 (1388)
Q Consensus 643 ~~~~ 646 (1388)
++|.
T Consensus 150 ~~~~ 153 (336)
T 2ast_B 150 SGCS 153 (336)
T ss_dssp TTCB
T ss_pred CCCC
Confidence 8873
No 88
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.46 E-value=1.1e-13 Score=154.45 Aligned_cols=208 Identities=20% Similarity=0.148 Sum_probs=137.1
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccc-cchhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L 613 (1388)
++|+.| +++.+.+....+..|..+++|++|++++|.+..++ ..+.++.+|++|+|++|.+..+| ..+.++++|
T Consensus 28 ~~l~~L-----~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 102 (276)
T 2z62_A 28 FSTKNL-----DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102 (276)
T ss_dssp TTCCEE-----ECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred CCccEE-----ECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence 356776 35556665544556777888888888888888776 46788888888888888888775 568888888
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcc-cCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLE-GMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
++|++++|......+..++.+++|++|++++|.+.. .+|..++.+++|++|... .+.........+
T Consensus 103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~------------ 169 (276)
T 2z62_A 103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDL------------ 169 (276)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-SSCCCEECGGGG------------
T ss_pred cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC-CCCCCcCCHHHh------------
Confidence 888888875544444468888888888888887433 256777777777766211 111000000011
Q ss_pred ecccCCCCchhhhhhhcCCCCCCC-eEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLD-VLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFS 771 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~-~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~ 771 (1388)
..+..++.+. .|++++|.+....+. .....+|+.|+++++....+|.+... .++
T Consensus 170 --------------~~l~~L~~l~l~L~ls~n~l~~~~~~----------~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~ 224 (276)
T 2z62_A 170 --------------RVLHQMPLLNLSLDLSLNPMNFIQPG----------AFKEIRLKELALDTNQLKSVPDGIFD-RLT 224 (276)
T ss_dssp --------------HHHHTCTTCCEEEECCSSCCCEECTT----------SSCSCCEEEEECCSSCCSCCCTTTTT-TCC
T ss_pred --------------hhhhhccccceeeecCCCcccccCcc----------ccCCCcccEEECCCCceeecCHhHhc-ccc
Confidence 1122233333 677777776542221 11234789999999988888876543 489
Q ss_pred CccEEeeecCCCCCC
Q 045318 772 NLELLRFENCAMCTS 786 (1388)
Q Consensus 772 ~L~~L~L~~~~~~~~ 786 (1388)
+|++|++++|++...
T Consensus 225 ~L~~L~l~~N~~~c~ 239 (276)
T 2z62_A 225 SLQKIWLHTNPWDCS 239 (276)
T ss_dssp SCCEEECCSSCBCCC
T ss_pred cccEEEccCCccccc
Confidence 999999999977543
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.46 E-value=5e-13 Score=145.47 Aligned_cols=198 Identities=17% Similarity=0.167 Sum_probs=99.7
Q ss_pred cceEEEecCCCCcccccccccCCCccceEEEccCCCCccChh-hhccCCCCCccceeeccCCCccccccc--cCCCCccE
Q 045318 1001 RLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPE-ALMHNDNAPLESLNVVDCNSLTYIARV--QLPPSLKL 1077 (1388)
Q Consensus 1001 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~-~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~sL~~ 1077 (1388)
+|++|++++|.+....+..|.++++|++|++++|..++.++. .+ ..+++|++|++++|+.++.++.. ...++|+.
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f--~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSF--YNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTE--ESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHc--CCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 455555555554444444555555555666555543333333 22 23455555555554445444432 22455666
Q ss_pred EEeecCcCcccchhhhhhccCCCCCCCCCCCCccccccc---eeecCCCCCcccccCC-CCCCcccC-ceeEecCCCccc
Q 045318 1078 LHIQSCHDLRTLIDEDQISGMKKDGDIPSGSSSYTCLLE---RLHIEDCPSLTSLFSL-KGLPATLE-DIKVKNCSKLLF 1152 (1388)
Q Consensus 1078 L~l~~c~~L~~~~~~~~l~~~~~~~~lp~~~~~~~~~L~---~L~l~~c~~l~~l~~~-~~~~~sL~-~L~l~~c~~l~~ 1152 (1388)
|+++++. ++ .+|. +..+.+ |+ .|++++++.++.+++. .....+|+ .|+++++ .+..
T Consensus 110 L~l~~n~-l~---------------~lp~-~~~l~~-L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~ 170 (239)
T 2xwt_C 110 LGIFNTG-LK---------------MFPD-LTKVYS-TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTS 170 (239)
T ss_dssp EEEEEEC-CC---------------SCCC-CTTCCB-CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCE
T ss_pred EeCCCCC-Cc---------------cccc-cccccc-cccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcc
Confidence 6665552 22 2222 222222 44 6666665455555431 22233466 6666553 3445
Q ss_pred cCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhc-cccceEeecCCCCccccCCcCCcCccceEE
Q 045318 1153 LSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFY-LKLTMLDINGCEKLMALPNNLHQFSIEILL 1231 (1388)
Q Consensus 1153 l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l-~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~ 1231 (1388)
++......++|++|++++|..+..++.... ..+ ++|+.|++++ +.++.+|.. .+++|+.|+
T Consensus 171 i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~----------------~~l~~~L~~L~l~~-N~l~~l~~~-~~~~L~~L~ 232 (239)
T 2xwt_C 171 VQGYAFNGTKLDAVYLNKNKYLTVIDKDAF----------------GGVYSGPSLLDVSQ-TSVTALPSK-GLEHLKELI 232 (239)
T ss_dssp ECTTTTTTCEEEEEECTTCTTCCEECTTTT----------------TTCSBCCSEEECTT-CCCCCCCCT-TCTTCSEEE
T ss_pred cCHhhcCCCCCCEEEcCCCCCcccCCHHHh----------------hccccCCcEEECCC-CccccCChh-HhccCceee
Confidence 554433345677777776655655544322 234 5677777766 455666654 346666666
Q ss_pred eccCCC
Q 045318 1232 IQDCPS 1237 (1388)
Q Consensus 1232 l~~c~~ 1237 (1388)
+.+++.
T Consensus 233 l~~~~~ 238 (239)
T 2xwt_C 233 ARNTWT 238 (239)
T ss_dssp CTTC--
T ss_pred ccCccC
Confidence 666543
No 90
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.44 E-value=1.6e-13 Score=155.20 Aligned_cols=194 Identities=20% Similarity=0.226 Sum_probs=140.2
Q ss_pred cCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccc
Q 045318 533 SDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYN 612 (1388)
Q Consensus 533 ~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~ 612 (1388)
.++++|+.|. ++.+.+.. + ..+..+++|++|+|++|.+..++. +..+++|++|+|++|.+..+| .+..+++
T Consensus 38 ~~l~~L~~L~-----l~~~~i~~-l-~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~ 108 (308)
T 1h6u_A 38 ADLDGITTLS-----AFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQS 108 (308)
T ss_dssp HHHHTCCEEE-----CTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTT
T ss_pred HHcCCcCEEE-----eeCCCccC-c-hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCC
Confidence 4566777774 33444332 2 246778899999999999998887 889999999999999998886 5888999
Q ss_pred cceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEe
Q 045318 613 LHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKI 692 (1388)
Q Consensus 613 L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i 692 (1388)
|++|++++|. +..+|. +..+++|++|++++|. +..++. ++.+++|+.|.. .
T Consensus 109 L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~l---~---------------------- 159 (308)
T 1h6u_A 109 IKTLDLTSTQ-ITDVTP-LAGLSNLQVLYLDLNQ-ITNISP-LAGLTNLQYLSI---G---------------------- 159 (308)
T ss_dssp CCEEECTTSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEEC---C----------------------
T ss_pred CCEEECCCCC-CCCchh-hcCCCCCCEEECCCCc-cCcCcc-ccCCCCccEEEc---c----------------------
Confidence 9999999985 455554 8899999999999988 444443 666666665511 1
Q ss_pred ecccCCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCC
Q 045318 693 SRLENVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSN 772 (1388)
Q Consensus 693 ~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~ 772 (1388)
.+.... . + .+..+++|+.|++++|.+.+.. .+..+++|+.|+++++....++. +. .+++
T Consensus 160 ----~n~l~~-~-~-~l~~l~~L~~L~l~~n~l~~~~-----------~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~ 218 (308)
T 1h6u_A 160 ----NAQVSD-L-T-PLANLSKLTTLKADDNKISDIS-----------PLASLPNLIEVHLKNNQISDVSP-LA--NTSN 218 (308)
T ss_dssp ----SSCCCC-C-G-GGTTCTTCCEEECCSSCCCCCG-----------GGGGCTTCCEEECTTSCCCBCGG-GT--TCTT
T ss_pred ----CCcCCC-C-h-hhcCCCCCCEEECCCCccCcCh-----------hhcCCCCCCEEEccCCccCcccc-cc--CCCC
Confidence 111111 0 1 1567788999999988876521 15567889999999998877774 43 4899
Q ss_pred ccEEeeecCCCCC
Q 045318 773 LELLRFENCAMCT 785 (1388)
Q Consensus 773 L~~L~L~~~~~~~ 785 (1388)
|+.|++++|.+..
T Consensus 219 L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 219 LFIVTLTNQTITN 231 (308)
T ss_dssp CCEEEEEEEEEEC
T ss_pred CCEEEccCCeeec
Confidence 9999999997644
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.44 E-value=8.7e-13 Score=153.43 Aligned_cols=284 Identities=13% Similarity=0.114 Sum_probs=164.2
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc------
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF------ 252 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~------ 252 (1388)
.+..|+||+++++++.+++.. + +++.|+|++|+|||||++++++.. . .+|+.+....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~--------~--~~v~i~G~~G~GKT~Ll~~~~~~~------~-~~~~~~~~~~~~~~~~ 72 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN--------Y--PLTLLLGIRRVGKSSLLRAFLNER------P-GILIDCRELYAERGHI 72 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH--------C--SEEEEECCTTSSHHHHHHHHHHHS------S-EEEEEHHHHHHTTTCB
T ss_pred ChHhcCChHHHHHHHHHHHhc--------C--CeEEEECCCcCCHHHHHHHHHHHc------C-cEEEEeecccccccCC
Confidence 446799999999999998864 1 589999999999999999999752 1 6677765432
Q ss_pred CHHHHHHHHHHHhcC----------------CCC--CCCcHHHHHHHHHhhcCC-ceEEEEEeCCCCCCh-------hhh
Q 045318 253 DAIKVTKAILRSICM----------------HTD--ADDDLNSLQVKLKDGLSR-KKFLLVLDDMWNDNY-------GDW 306 (1388)
Q Consensus 253 ~~~~~~~~i~~~l~~----------------~~~--~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~-------~~~ 306 (1388)
+...+...+.+.+.. ... ......++...+.+..+. ++++||+||++.... ..+
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 556666666665532 000 123455566666655542 389999999965321 122
Q ss_pred hhhcccccCCCCCcEEEEEcCChhHHhhc-----------CC-CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHH
Q 045318 307 TSLRLPFVAGASGSKIIVTTRNQSVASMM-----------GS-VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEI 374 (1388)
Q Consensus 307 ~~l~~~~~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~ 374 (1388)
..+.. +.....+.++|+|++...+...+ +. ...+++.+|+.+|+.+++.... +....... .+.
T Consensus 153 ~~L~~-~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~~---~~~ 227 (350)
T 2qen_A 153 ALFAY-AYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDVP---ENE 227 (350)
T ss_dssp HHHHH-HHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCCC---HHH
T ss_pred HHHHH-HHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCCC---HHH
Confidence 32322 22222578899999876532211 11 2378999999999999998753 21111111 356
Q ss_pred HHHHHHHcCCChHHHHHHHHhhcCCCCHHHHH-HHHhhhccCCCCCCCchh-HhhHHHHHHHHHHcCCcCCCCCc-----
Q 045318 375 GEEILKKCNGLPLAAKTLGGLLRGKSNPFDWR-NVLNNKIWNLPEEGGDIM-RALKNDVVLVWMAEGLLEPDTSE----- 447 (1388)
Q Consensus 375 ~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~-~~~~~~~~~~~~~~~~~~-~~l~~~li~~wia~g~i~~~~~~----- 447 (1388)
+..|++.++|+|+++..++..+....+...+. .+.+.....+........ ..-..+-+-..+|.|-... ..-
T Consensus 228 ~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~g~~~~-~~l~~~~~ 306 (350)
T 2qen_A 228 IEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILRAIALGYNRW-SLIRDYLA 306 (350)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTCCSH-HHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHhCCCCH-HHHHHHHH
Confidence 78999999999999999887643212222221 111100000000000000 0012233334556542110 000
Q ss_pred ----chHHHHHHHHHHHHHhCCCCccccCCCcccc-cchHHHHHH
Q 045318 448 ----MKMEELGRSYFRELHSRSFFQKSYMDSRFIM-HDLITDLAQ 487 (1388)
Q Consensus 448 ----~~~~~~~~~~~~~L~~~~li~~~~~~~~~~m-Hdli~d~a~ 487 (1388)
.........+++.|.+.+++... +..|.+ |.+++++.+
T Consensus 307 ~~~~~~~~~~~~~~l~~L~~~gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 307 VKGTKIPEPRLYALLENLKKMNWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTSEEEE--TTEEEESSHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHhCCCEEec--CCEEEEecHHHHHHHc
Confidence 00123346789999999999875 234554 677776543
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=2.2e-13 Score=151.41 Aligned_cols=124 Identities=22% Similarity=0.277 Sum_probs=91.9
Q ss_pred ccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccc-hhcc
Q 045318 532 ISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPES-VNTL 610 (1388)
Q Consensus 532 ~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L 610 (1388)
...+++|+.|. +..+.+.. ...+..+++|++|++++|.+..++ .++.+++|++|+|++|.++.+|.. ++++
T Consensus 37 ~~~l~~L~~L~-----l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l 108 (272)
T 3rfs_A 37 QNELNSIDQII-----ANNSDIKS--VQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKL 108 (272)
T ss_dssp HHHHTTCCEEE-----CTTSCCCC--CTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred cccccceeeee-----eCCCCccc--ccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCC
Confidence 34567777774 33333332 234678899999999999998875 789999999999999999988654 6899
Q ss_pred cccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcC-CCCCCCCCCCC
Q 045318 611 YNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L 664 (1388)
++|++|++++|......|..++.+++|++|++++|.+ ..+|. .++.+++|++|
T Consensus 109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L 162 (272)
T 3rfs_A 109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTEL 162 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEE
Confidence 9999999999865544455589999999999999973 34443 24455544444
No 93
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.43 E-value=2.1e-14 Score=169.24 Aligned_cols=236 Identities=15% Similarity=0.105 Sum_probs=143.1
Q ss_pred cccCCCCCceeeeecccccccccchHHH----HhhccCceeeEEEeCCcccc----cccccc-------ccCcccceeec
Q 045318 531 AISDCKHLRTFVSVQWTFSRHFLSDSVV----HMLLKLQCLRVLCLREYNIC----KISNTI-------GDLKHLRHLDL 595 (1388)
Q Consensus 531 ~~~~~~~Lr~L~~~~~~~~~~~l~~~~~----~~~~~l~~Lr~L~L~~~~i~----~lp~~i-------~~l~~Lr~L~L 595 (1388)
.+..+++|++| +++.|.+....+ ..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|
T Consensus 27 ~l~~~~~L~~L-----~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L 101 (386)
T 2ca6_A 27 VLLEDDSVKEI-----VLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL 101 (386)
T ss_dssp HHHHCSCCCEE-----ECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred HHhcCCCccEE-----ECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC
Confidence 45567788888 466666665543 33567888999999987555 334333 68889999999
Q ss_pred cCccccc-----cccchhcccccceeecCCCcchhh----cchhhccc---------CCCCeeecCCCCCc-ccCc---C
Q 045318 596 SETLIET-----LPESVNTLYNLHTLLLESCSRLKK----LCADMGNL---------IKLRHLNNYNVPLL-EGMP---L 653 (1388)
Q Consensus 596 ~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~~----lp~~i~~L---------~~L~~L~l~~~~~~-~~~p---~ 653 (1388)
++|.+.. +|..+.++++|++|+|++|..... ++..+..+ ++|++|++++|.+. ..+| .
T Consensus 102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~ 181 (386)
T 2ca6_A 102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 181 (386)
T ss_dssp CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence 9998876 788888899999999998865433 33334444 88999999988744 2333 2
Q ss_pred CCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchh----hhhhhcCCCCCCCeEEEEeeCCCCCC
Q 045318 654 RIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGD----ARDAELNGKRNLDVLFLEWTNSSGSS 729 (1388)
Q Consensus 654 ~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~----~~~~~l~~~~~L~~L~L~~~~~~~~~ 729 (1388)
.+..+++|++|. +..+..... ..+..+..+++|+.|+|++|.+..
T Consensus 182 ~l~~~~~L~~L~-----------------------------L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~-- 230 (386)
T 2ca6_A 182 TFQSHRLLHTVK-----------------------------MVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH-- 230 (386)
T ss_dssp HHHHCTTCCEEE-----------------------------CCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHH--
T ss_pred HHHhCCCcCEEE-----------------------------CcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCc--
Confidence 344455555441 111111110 122255667777777777776432
Q ss_pred CCchhHHHHhccCCCCCCcceEEEeccCCCCC-----CcccCCCCCCCccEEeeecCCCCC----CCC-CC-CCCCCcce
Q 045318 730 REPETEKHVLDMLRPHENLKQLAIRGYGGANF-----PIWLGDSTFSNLELLRFENCAMCT----SLP-SI-GQLPALKH 798 (1388)
Q Consensus 730 ~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-----p~~~~~~~l~~L~~L~L~~~~~~~----~l~-~l-~~l~~L~~ 798 (1388)
.........+..+++|+.|+++++..... |.++....+++|++|+|++|.+.. .+| .+ ..+++|+.
T Consensus 231 ---~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~ 307 (386)
T 2ca6_A 231 ---LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307 (386)
T ss_dssp ---HHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred ---HHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence 01112233455566677777766654432 333321225667777777776655 233 23 44667777
Q ss_pred eeccCCc
Q 045318 799 LSIIGMA 805 (1388)
Q Consensus 799 L~L~~~~ 805 (1388)
|++++|.
T Consensus 308 L~l~~N~ 314 (386)
T 2ca6_A 308 LELNGNR 314 (386)
T ss_dssp EECTTSB
T ss_pred EEccCCc
Confidence 7777664
No 94
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.42 E-value=7.7e-13 Score=146.85 Aligned_cols=180 Identities=19% Similarity=0.172 Sum_probs=122.8
Q ss_pred ceeeEEEeCCccccccc-cccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
..|+.|+|++|.++.+| ..|.++.+|++|+|++|.+..+|.. +.++++|++|++++|......+..+..+++|++|++
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 116 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence 45788888888888776 3678888888888888888887665 467888888888887544333345678888888888
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|.+....+..++.+++|++|.... +.+. ......+..+++|+.|++++
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~------------------------n~l~------~~~~~~~~~l~~L~~L~L~~ 166 (270)
T 2o6q_A 117 DRNQLKSLPPRVFDSLTKLTYLSLGY------------------------NELQ------SLPKGVFDKLTSLKELRLYN 166 (270)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS------------------------SCCC------CCCTTTTTTCTTCCEEECCS
T ss_pred CCCccCeeCHHHhCcCcCCCEEECCC------------------------CcCC------ccCHhHccCCcccceeEecC
Confidence 88874433334466677666662110 0111 11122356678888888888
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCC
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMC 784 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~ 784 (1388)
|.+....+. .+..+++|+.|+++++....+|..... .+++|+.|++++|.+.
T Consensus 167 n~l~~~~~~---------~~~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 167 NQLKRVPEG---------AFDKLTELKTLKLDNNQLKRVPEGAFD-SLEKLKMLQLQENPWD 218 (270)
T ss_dssp SCCSCCCTT---------TTTTCTTCCEEECCSSCCSCCCTTTTT-TCTTCCEEECCSSCBC
T ss_pred CcCcEeChh---------HhccCCCcCEEECCCCcCCcCCHHHhc-cccCCCEEEecCCCee
Confidence 877653222 245668889999988888888765432 4889999999999764
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.40 E-value=3.9e-12 Score=147.06 Aligned_cols=223 Identities=17% Similarity=0.098 Sum_probs=135.4
Q ss_pred CCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceE-EEecCCCCcccccccc
Q 045318 942 PILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHY-LELRSCPSLVKLPQTL 1020 (1388)
Q Consensus 942 ~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~-L~L~~~~~~~~~p~~~ 1020 (1388)
+++++|++++|+++.++. ..|.++++|++|+++++..++.++... +..+++|.+ +.+++|.+....|..|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~---~~f~~l~~L~~L~Ls~N~i~~~i~~~~------f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQK---GAFSGFGDLEKIEISQNDVLEVIEADV------FSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TTCSEEEEESCCCSEECT---TSSTTCTTCCEEEEECCTTCCEECTTS------BCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCCEEEccCCcCCCcCH---HHHcCCCCCCEEECcCCCCCCccChhH------hhcchhhhhhhcccCCcccccCchhh
Confidence 578999999999998865 347888999999999877666666544 666777665 4555565555557778
Q ss_pred cCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecCcCcccchhhhhhccCCC
Q 045318 1021 LSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSCHDLRTLIDEDQISGMKK 1100 (1388)
Q Consensus 1021 ~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c~~L~~~~~~~~l~~~~~ 1100 (1388)
..+++|++|++++|... .+|.... .....+..|++.++..+..++...+
T Consensus 101 ~~l~~L~~L~l~~n~l~-~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f----------------------------- 149 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIK-HLPDVHK-IHSLQKVLLDIQDNINIHTIERNSF----------------------------- 149 (350)
T ss_dssp CCCTTCCEEEEEEECCS-SCCCCTT-CCBSSCEEEEEESCTTCCEECTTSS-----------------------------
T ss_pred hhccccccccccccccc-cCCchhh-cccchhhhhhhccccccccccccch-----------------------------
Confidence 88899999999988743 3333221 2234455566666555555443211
Q ss_pred CCCCCCCCCccccccceeecCCCCCcccccCCCCCCcccCceeEecCCCccccCCCC-CCccccccEEeccCCCcccccc
Q 045318 1101 DGDIPSGSSSYTCLLERLHIEDCPSLTSLFSLKGLPATLEDIKVKNCSKLLFLSKRG-ALPKVLKDLYIYECSELESIAE 1179 (1388)
Q Consensus 1101 ~~~lp~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~sL~~L~l~~c~~l~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~ 1179 (1388)
......++.|++++ +.++.++.......+|+.|.+.+++.++.++... ..+++|+.|+++++ .++.+|.
T Consensus 150 --------~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~ 219 (350)
T 4ay9_X 150 --------VGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPS 219 (350)
T ss_dssp --------TTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCS
T ss_pred --------hhcchhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccCh
Confidence 11112255555554 3455544333233346666666666666665432 34466777777764 5666654
Q ss_pred CCCCCCCcceeccchhhhhhhccccceEeecCCCCccccCCcCCcCccceEEec
Q 045318 1180 GLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMALPNNLHQFSIEILLIQ 1233 (1388)
Q Consensus 1180 ~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~l~~~~~~~~L~~L~l~ 1233 (1388)
... .+|+.|.+.+++.++.+|..-..++|+.+++.
T Consensus 220 ~~~-------------------~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 YGL-------------------ENLKKLRARSTYNLKKLPTLEKLVALMEASLT 254 (350)
T ss_dssp SSC-------------------TTCCEEECTTCTTCCCCCCTTTCCSCCEEECS
T ss_pred hhh-------------------ccchHhhhccCCCcCcCCCchhCcChhhCcCC
Confidence 332 45666666666666666643334667666664
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.40 E-value=1.9e-12 Score=141.81 Aligned_cols=172 Identities=19% Similarity=0.214 Sum_probs=113.0
Q ss_pred eeeEEEeCCccccccccccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 566 CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
..++++++++.++.+|..+. .+|++|+|++|.+..++ ..++++++|++|+|++|......|..+..+++|++|++++
T Consensus 15 ~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 15 GKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 46778888888888887665 58888889888888774 4688888888999888865555556688888888888888
Q ss_pred CCCcccCc-CCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEee
Q 045318 645 VPLLEGMP-LRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWT 723 (1388)
Q Consensus 645 ~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~ 723 (1388)
|.+. .+| ..++.+++|++| ++++|
T Consensus 93 n~l~-~~~~~~~~~l~~L~~L------------------------------------------------------~L~~N 117 (251)
T 3m19_A 93 NQLA-SLPLGVFDHLTQLDKL------------------------------------------------------YLGGN 117 (251)
T ss_dssp SCCC-CCCTTTTTTCTTCCEE------------------------------------------------------ECCSS
T ss_pred Cccc-ccChhHhcccCCCCEE------------------------------------------------------EcCCC
Confidence 8743 333 334444444444 33333
Q ss_pred CCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCc-ccCCCCCCCccEEeeecCCCCCCCC-CCCCCCCcceeec
Q 045318 724 NSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPI-WLGDSTFSNLELLRFENCAMCTSLP-SIGQLPALKHLSI 801 (1388)
Q Consensus 724 ~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~-~~~~~~l~~L~~L~L~~~~~~~~l~-~l~~l~~L~~L~L 801 (1388)
.+....+. .+..+++|+.|+++++....+|. .+. .+++|++|+|++|.+....+ .+..+++|+.|++
T Consensus 118 ~l~~~~~~---------~~~~l~~L~~L~Ls~N~l~~~~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 186 (251)
T 3m19_A 118 QLKSLPSG---------VFDRLTKLKELRLNTNQLQSIPAGAFD--KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186 (251)
T ss_dssp CCCCCCTT---------TTTTCTTCCEEECCSSCCCCCCTTTTT--TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cCCCcChh---------HhccCCcccEEECcCCcCCccCHHHcC--cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEe
Confidence 32221110 12233444444444444444544 233 36788888888887776555 5778888888888
Q ss_pred cCCc
Q 045318 802 IGMA 805 (1388)
Q Consensus 802 ~~~~ 805 (1388)
++|+
T Consensus 187 ~~N~ 190 (251)
T 3m19_A 187 FGNQ 190 (251)
T ss_dssp CSCC
T ss_pred eCCc
Confidence 8875
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.39 E-value=3.1e-14 Score=167.74 Aligned_cols=213 Identities=20% Similarity=0.196 Sum_probs=135.6
Q ss_pred HHHhhccCceeeEEEeCCccccc-----cccccccCcccceeeccCcccc----ccccch-------hcccccceeecCC
Q 045318 557 VVHMLLKLQCLRVLCLREYNICK-----ISNTIGDLKHLRHLDLSETLIE----TLPESV-------NTLYNLHTLLLES 620 (1388)
Q Consensus 557 ~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~L~~ 620 (1388)
++..+..++.|++|+|++|.+.. ++..+..+++|++|+|++|.+. .+|..+ ..+++|++|+|++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 34455778899999999998874 4456789999999999997655 335444 7889999999999
Q ss_pred Ccchh----hcchhhcccCCCCeeecCCCCCcccCcCCCC----CC---------CCCCCCCceEeccCCCCCccccccc
Q 045318 621 CSRLK----KLCADMGNLIKLRHLNNYNVPLLEGMPLRIG----HL---------SCLQTLPYFVVGKNTGSQLRELKFL 683 (1388)
Q Consensus 621 ~~~~~----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~----~L---------~~L~~L~~~~~~~~~~~~~~~l~~L 683 (1388)
|.... .+|..+..+++|++|++++|.+....+..+. .+ ++|++|
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L------------------- 164 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSI------------------- 164 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEE-------------------
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEE-------------------
Confidence 86555 4788899999999999999985322222222 22 333333
Q ss_pred ccccceeEeecccCCCCchh---hhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhc-cCCCCCCcceEEEeccCC-
Q 045318 684 ENLQVKLKISRLENVKDSGD---ARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLD-MLRPHENLKQLAIRGYGG- 758 (1388)
Q Consensus 684 ~~L~~~L~i~~l~~~~~~~~---~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~-~L~~~~~L~~L~l~~~~~- 758 (1388)
.+..+..... .....+..+++|+.|++++|.+.. ........ .+..+++|+.|+++++..
T Consensus 165 ----------~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~-----~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 165 ----------ICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP-----EGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp ----------ECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCH-----HHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred ----------ECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCH-----hHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 1111211111 112345566788888888776542 11111223 556667777777777665
Q ss_pred ----CCCCcccCCCCCCCccEEeeecCCCCCC----CC-CC--CCCCCcceeeccCCc
Q 045318 759 ----ANFPIWLGDSTFSNLELLRFENCAMCTS----LP-SI--GQLPALKHLSIIGMA 805 (1388)
Q Consensus 759 ----~~~p~~~~~~~l~~L~~L~L~~~~~~~~----l~-~l--~~l~~L~~L~L~~~~ 805 (1388)
..+|.++.. +++|++|+|++|.+... ++ .+ +.+++|+.|+|++|.
T Consensus 230 ~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~ 285 (386)
T 2ca6_A 230 HLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE 285 (386)
T ss_dssp HHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC
T ss_pred cHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc
Confidence 334555543 66777777777765443 22 22 446777777777764
No 98
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.36 E-value=7.2e-12 Score=149.19 Aligned_cols=207 Identities=15% Similarity=0.084 Sum_probs=132.7
Q ss_pred CCccccchhhHHHHHHHH-hcCCCCCCCCCCcEEEEE--EcCCCChHHHHHHHHhcCcccc---ccCC-ceEEEEeCCcc
Q 045318 180 EAEVHGRDDDKKAIVELL-LNDDLNADCDGGLFVIPI--VGMGGLGKTTLAQLVYNDHMVE---SHFD-LKAWTCVSDDF 252 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l-~~~~~~~~~~~~~~vv~I--~G~gGiGKTtLa~~v~~~~~~~---~~F~-~~~wv~~s~~~ 252 (1388)
+..++||+++++++.+++ .....+. .....++.| +|++|+||||||+++++..... ..|+ ..+|+.+....
T Consensus 21 p~~l~gR~~el~~l~~~l~~~~~~~~--~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 21 PPELRVRRGEAEALARIYLNRLLSGA--GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp CSSCSSSCHHHHHHHHHHHHHHHTSS--CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCCChHHHHHHHHHHHhHHHhcCC--CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 367999999999999988 4211000 012245666 9999999999999999863221 0122 35777776777
Q ss_pred CHHHHHHHHHHHhcCCCCC-CCcHHHHHHHHHhhcC--CceEEEEEeCCCCCC------hhhhhhhcccccCC---C--C
Q 045318 253 DAIKVTKAILRSICMHTDA-DDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDN------YGDWTSLRLPFVAG---A--S 318 (1388)
Q Consensus 253 ~~~~~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~l~~~~~~~---~--~ 318 (1388)
+...++..++.+++..... ..+..++...+.+.+. +++++||+||+|... ...+..+...+... + .
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCc
Confidence 8889999999998754321 2334555566666654 789999999996621 23333333333211 2 3
Q ss_pred CcEEEEEcCChhHHhhcC---------CCceEeCCCCChhhHHHHHHHcc---cCCCCCCCCchHHHHHHHHHHHcC---
Q 045318 319 GSKIIVTTRNQSVASMMG---------SVSAYELKKLTDDDCRLVFTQHS---LGTKDFSNHQHLKEIGEEILKKCN--- 383 (1388)
Q Consensus 319 gs~iivTtR~~~v~~~~~---------~~~~~~l~~L~~~~~~~lf~~~~---~~~~~~~~~~~~~~~~~~i~~~c~--- 383 (1388)
...||+|||...+...+. ....+++.+++.++++++|...+ +... ... .+....|++.++
T Consensus 179 ~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~---~~~~~~i~~~~~~~~ 253 (412)
T 1w5s_A 179 RIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDT--VWE---PRHLELISDVYGEDK 253 (412)
T ss_dssp BEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTT--SCC---HHHHHHHHHHHCGGG
T ss_pred eEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCC--CCC---hHHHHHHHHHHHHhc
Confidence 455888887655332111 11239999999999999997653 2211 111 356788999999
Q ss_pred ---CChHHHHHHH
Q 045318 384 ---GLPLAAKTLG 393 (1388)
Q Consensus 384 ---g~Plai~~~~ 393 (1388)
|.|..+..+.
T Consensus 254 ~~~G~p~~~~~l~ 266 (412)
T 1w5s_A 254 GGDGSARRAIVAL 266 (412)
T ss_dssp TSCCCHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 9997655544
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.35 E-value=2.6e-13 Score=156.74 Aligned_cols=253 Identities=19% Similarity=0.183 Sum_probs=127.1
Q ss_pred eeEEEeCCccccccccccccC--cccceeeccCccccccccchhcccccceeecCCCcchhh-cchhhcccCCCCeeecC
Q 045318 567 LRVLCLREYNICKISNTIGDL--KHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKK-LCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 567 Lr~L~L~~~~i~~lp~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~-lp~~i~~L~~L~~L~l~ 643 (1388)
++.||++++.+. |..+..+ .++++|++++|.+...+..+.++++|++|++++|..... +|..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 555666665554 3444555 566666666666665555555666666666666543323 55556666666666666
Q ss_pred CCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCC-CCchhhhhhhcCCCCCCCeEEEEe
Q 045318 644 NVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENV-KDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 644 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~-~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
+|.+....|..++.+++|++|... .+ .......+..+..+++|+.|++++
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~-----------------------------~~~~l~~~~l~~~~~~~~~L~~L~l~~ 177 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLS-----------------------------GCSGFSEFALQTLLSSCSRLDELNLSW 177 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECT-----------------------------TCBSCCHHHHHHHHHHCTTCCEEECCC
T ss_pred CcccCHHHHHHHhcCCCCCEEECC-----------------------------CCCCCCHHHHHHHHhcCCCCCEEcCCC
Confidence 665443444445555555544110 01 001111223344455566666655
Q ss_pred e-CCCCCCCCchhHHHHhccCCCCC-CcceEEEeccCC----CCCCcccCCCCCCCccEEeeecCCC-CC-CCCCCCCCC
Q 045318 723 T-NSSGSSREPETEKHVLDMLRPHE-NLKQLAIRGYGG----ANFPIWLGDSTFSNLELLRFENCAM-CT-SLPSIGQLP 794 (1388)
Q Consensus 723 ~-~~~~~~~~~~~~~~~l~~L~~~~-~L~~L~l~~~~~----~~~p~~~~~~~l~~L~~L~L~~~~~-~~-~l~~l~~l~ 794 (1388)
| .+.+ ......+..++ +|++|+++++.. ..+|..+.. +++|++|++++|.. .. .++.++.++
T Consensus 178 ~~~l~~--------~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~--~~~L~~L~l~~~~~l~~~~~~~l~~l~ 247 (336)
T 2ast_B 178 CFDFTE--------KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR--CPNLVHLDLSDSVMLKNDCFQEFFQLN 247 (336)
T ss_dssp CTTCCH--------HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH--CTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred CCCcCh--------HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhh--CCCCCEEeCCCCCcCCHHHHHHHhCCC
Confidence 5 3321 01111223344 566666655521 122333322 56777777777763 22 233566667
Q ss_pred CcceeeccCCcCcEEeccccccCCCccCCCCcceeeccccccccccccCCCCCccccc-ccccEEeecCCccccccCCCC
Q 045318 795 ALKHLSIIGMALVKSVGLQFYGNSGTVSFPSLETLFFGDMPEWEDWIPHQPSQEVEVF-PQLQELSLVRCSKLLGRLPEH 873 (1388)
Q Consensus 795 ~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~-~~L~~L~l~~C~~L~~~~p~~ 873 (1388)
+|++|++++|..+. +..+ .....+++|+.|.+.++ +.. ..+..+ .+|..|++++ +.+++..|..
T Consensus 248 ~L~~L~l~~~~~~~--~~~~---~~l~~~~~L~~L~l~~~--i~~-------~~~~~l~~~l~~L~l~~-n~l~~~~~~~ 312 (336)
T 2ast_B 248 YLQHLSLSRCYDII--PETL---LELGEIPTLKTLQVFGI--VPD-------GTLQLLKEALPHLQINC-SHFTTIARPT 312 (336)
T ss_dssp TCCEEECTTCTTCC--GGGG---GGGGGCTTCCEEECTTS--SCT-------TCHHHHHHHSTTSEESC-CCSCCTTCSS
T ss_pred CCCEeeCCCCCCCC--HHHH---HHHhcCCCCCEEeccCc--cCH-------HHHHHHHhhCcceEEec-ccCccccCCc
Confidence 77777777764221 1111 01123677777777665 111 112223 3466677764 7888776654
Q ss_pred CC
Q 045318 874 LP 875 (1388)
Q Consensus 874 l~ 875 (1388)
+.
T Consensus 313 ~~ 314 (336)
T 2ast_B 313 IG 314 (336)
T ss_dssp CS
T ss_pred cc
Confidence 43
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.35 E-value=1.9e-12 Score=145.00 Aligned_cols=169 Identities=19% Similarity=0.266 Sum_probs=112.3
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
..++.|++|++++|.+..+| .+..+++|++|+|++|.+..+|. ++++++|++|++++|. +..+| .+..+++|++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~ 118 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLS 118 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEE
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCCh-hhccCCCCCEEE
Confidence 45677888899998888886 47888899999999998888877 8888999999998874 44454 488888899998
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
+++|. +..++ .++.+++|+. |+++
T Consensus 119 L~~n~-i~~~~-~l~~l~~L~~------------------------------------------------------L~l~ 142 (291)
T 1h6t_A 119 LEHNG-ISDIN-GLVHLPQLES------------------------------------------------------LYLG 142 (291)
T ss_dssp CTTSC-CCCCG-GGGGCTTCCE------------------------------------------------------EECC
T ss_pred CCCCc-CCCCh-hhcCCCCCCE------------------------------------------------------EEcc
Confidence 88887 33332 2333333333 3333
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeec
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSI 801 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 801 (1388)
+|.+... ..+..+++|+.|+++++....++. +. .+++|+.|++++|.+.. ++.+..+++|+.|++
T Consensus 143 ~n~l~~~-----------~~l~~l~~L~~L~L~~N~l~~~~~-l~--~l~~L~~L~L~~N~i~~-l~~l~~l~~L~~L~l 207 (291)
T 1h6t_A 143 NNKITDI-----------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL 207 (291)
T ss_dssp SSCCCCC-----------GGGGGCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEE
T ss_pred CCcCCcc-----------hhhccCCCCCEEEccCCccccchh-hc--CCCccCEEECCCCcCCC-ChhhccCCCCCEEEC
Confidence 3332220 112333444444444444444443 32 36788888888886654 456778888888888
Q ss_pred cCCc
Q 045318 802 IGMA 805 (1388)
Q Consensus 802 ~~~~ 805 (1388)
++|+
T Consensus 208 ~~n~ 211 (291)
T 1h6t_A 208 FSQE 211 (291)
T ss_dssp EEEE
T ss_pred cCCc
Confidence 8774
No 101
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.33 E-value=1.4e-13 Score=160.31 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=76.0
Q ss_pred ccccccchHHHHhhccCceeeEEEeCCccccccc-----cccccCc-ccceeeccCcccccc-ccchhcc-----cccce
Q 045318 548 FSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-----NTIGDLK-HLRHLDLSETLIETL-PESVNTL-----YNLHT 615 (1388)
Q Consensus 548 ~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~ 615 (1388)
++.+.+.+.++..+...+.|++|||++|.++..+ ..+..++ +|++|+|++|.+... +..+..+ ++|++
T Consensus 5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 84 (362)
T 3goz_A 5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84 (362)
T ss_dssp CCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred cccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccE
Confidence 4556666667766677777999999999888765 5677787 899999999988866 6667665 88999
Q ss_pred eecCCCcchhhcchhhcc----c-CCCCeeecCCCCC
Q 045318 616 LLLESCSRLKKLCADMGN----L-IKLRHLNNYNVPL 647 (1388)
Q Consensus 616 L~L~~~~~~~~lp~~i~~----L-~~L~~L~l~~~~~ 647 (1388)
|+|++|......+..+.. + ++|++|++++|.+
T Consensus 85 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 85 LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp EECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred EECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 999998655455554443 4 8899999999884
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.31 E-value=4.6e-12 Score=143.84 Aligned_cols=203 Identities=14% Similarity=0.050 Sum_probs=129.6
Q ss_pred ceeeEEEeCCccccc--ccc--ccccCcccceeeccCcccc-ccccch--hcccccceeecCCCcchhhcc----hhhcc
Q 045318 565 QCLRVLCLREYNICK--ISN--TIGDLKHLRHLDLSETLIE-TLPESV--NTLYNLHTLLLESCSRLKKLC----ADMGN 633 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~--lp~--~i~~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~L~~~~~~~~lp----~~i~~ 633 (1388)
..++.|.+.++.+.. +.. .+..+.+|++|++++|.+. ..|..+ +.+++|++|++++|......| ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 346778888877652 211 2234567999999999988 457777 999999999999997655433 45568
Q ss_pred cCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchh---hhhhhcC
Q 045318 634 LIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGD---ARDAELN 710 (1388)
Q Consensus 634 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~---~~~~~l~ 710 (1388)
+++|++|++++|.+....|..++.+++|++|. +..+...+. .....+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~-----------------------------Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLD-----------------------------LSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEE-----------------------------CCSCTTCHHHHHHTTSCTT
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEE-----------------------------CCCCCCccchhhhHHHhhh
Confidence 99999999999996555556777888777772 111111111 1112235
Q ss_pred CCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCC-CcccCCC-CCCCccEEeeecCCCCCCCC
Q 045318 711 GKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANF-PIWLGDS-TFSNLELLRFENCAMCTSLP 788 (1388)
Q Consensus 711 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~-p~~~~~~-~l~~L~~L~L~~~~~~~~l~ 788 (1388)
.+++|+.|++++|.+... .......+..+++|++|+++++..... |..+..- .+++|++|++++|.+.. +|
T Consensus 195 ~l~~L~~L~Ls~N~l~~l------~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~-lp 267 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETP------TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQ-VP 267 (310)
T ss_dssp SSCCCCSCBCCSSCCCCH------HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCS-CC
T ss_pred cCCCCCEEECCCCCCCch------HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCc-hh
Confidence 678888899988876431 000001123456777777777776655 5444321 12577777777776663 34
Q ss_pred -CCCCCCCcceeeccCCc
Q 045318 789 -SIGQLPALKHLSIIGMA 805 (1388)
Q Consensus 789 -~l~~l~~L~~L~L~~~~ 805 (1388)
.+. ++|++|++++|.
T Consensus 268 ~~~~--~~L~~L~Ls~N~ 283 (310)
T 4glp_A 268 KGLP--AKLRVLDLSSNR 283 (310)
T ss_dssp SCCC--SCCSCEECCSCC
T ss_pred hhhc--CCCCEEECCCCc
Confidence 332 677777777764
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.31 E-value=1.9e-12 Score=135.79 Aligned_cols=84 Identities=14% Similarity=0.216 Sum_probs=62.2
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
..++.|++|++++|.+..+| .+..+++|++|++++|.+..+| .+..+++|++|++++|......|..++.+++|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 34566778888888888777 6777888888888888776655 577778888888887765555667777777777777
Q ss_pred cCCCCC
Q 045318 642 NYNVPL 647 (1388)
Q Consensus 642 l~~~~~ 647 (1388)
+++|.+
T Consensus 119 Ls~n~i 124 (197)
T 4ezg_A 119 ISHSAH 124 (197)
T ss_dssp CCSSBC
T ss_pred ecCCcc
Confidence 777763
No 104
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.30 E-value=3.3e-12 Score=154.88 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=132.9
Q ss_pred eeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 566 CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
+|++|+|++|.++.+|..+. .+|++|+|++|.|+.+| +.+++|++|++++|. +..+|. +.+ +|++|++++|
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N 130 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNN 130 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSS
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCC
Confidence 78999999999999987664 78999999999999998 567899999999985 445777 665 8999999999
Q ss_pred CCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEeeCC
Q 045318 646 PLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEWTNS 725 (1388)
Q Consensus 646 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~ 725 (1388)
. +..+|. .+++|++|. ... +.+... +. .+++|+.|++++|.+
T Consensus 131 ~-l~~lp~---~l~~L~~L~---Ls~---------------------N~l~~l-------p~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 131 Q-LTMLPE---LPALLEYIN---ADN---------------------NQLTML-------PE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp C-CSCCCC---CCTTCCEEE---CCS---------------------SCCSCC-------CC---CCTTCCEEECCSSCC
T ss_pred c-CCCCCC---cCccccEEe---CCC---------------------CccCcC-------CC---cCCCcCEEECCCCCC
Confidence 8 445776 456666551 111 111111 11 356888999998887
Q ss_pred CCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCc-------cEEeeecCCCCCCCCCCCCCCCcce
Q 045318 726 SGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNL-------ELLRFENCAMCTSLPSIGQLPALKH 798 (1388)
Q Consensus 726 ~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L-------~~L~L~~~~~~~~l~~l~~l~~L~~ 798 (1388)
.+. +. +. ++|+.|++++|....+|. +.. +| +.|+|++|.+....+.+..+++|+.
T Consensus 173 ~~l-p~----------l~--~~L~~L~Ls~N~L~~lp~-~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~ 234 (571)
T 3cvr_A 173 TFL-PE----------LP--ESLEALDVSTNLLESLPA-VPV----RNHHSEETEIFFRCRENRITHIPENILSLDPTCT 234 (571)
T ss_dssp SCC-CC----------CC--TTCCEEECCSSCCSSCCC-CC------------CCEEEECCSSCCCCCCGGGGGSCTTEE
T ss_pred CCc-ch----------hh--CCCCEEECcCCCCCchhh-HHH----hhhcccccceEEecCCCcceecCHHHhcCCCCCE
Confidence 662 21 11 789999999998888887 432 66 9999999988754335777999999
Q ss_pred eeccCCcCcEEeccc
Q 045318 799 LSIIGMALVKSVGLQ 813 (1388)
Q Consensus 799 L~L~~~~~~~~~~~~ 813 (1388)
|+|++|+....++..
T Consensus 235 L~L~~N~l~~~~p~~ 249 (571)
T 3cvr_A 235 IILEDNPLSSRIRES 249 (571)
T ss_dssp EECCSSSCCHHHHHH
T ss_pred EEeeCCcCCCcCHHH
Confidence 999999765544433
No 105
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.28 E-value=2e-11 Score=142.28 Aligned_cols=276 Identities=13% Similarity=0.117 Sum_probs=158.5
Q ss_pred cCCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc-----cC
Q 045318 179 NEAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD-----FD 253 (1388)
Q Consensus 179 ~~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-----~~ 253 (1388)
.+..|+||+++++++.+ +. . +++.|+|++|+|||||++++++.. .. ..+|+.+... .+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---------~--~~v~i~G~~G~GKT~L~~~~~~~~--~~---~~~~~~~~~~~~~~~~~ 73 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---------A--PITLVLGLRRTGKSSIIKIGINEL--NL---PYIYLDLRKFEERNYIS 73 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---------S--SEEEEEESTTSSHHHHHHHHHHHH--TC---CEEEEEGGGGTTCSCCC
T ss_pred CHHHhcChHHHHHHHHH-hc---------C--CcEEEECCCCCCHHHHHHHHHHhc--CC---CEEEEEchhhccccCCC
Confidence 44679999999999998 62 2 489999999999999999999753 22 2578877642 34
Q ss_pred HHHHHHHHHHHhcC-------------C-------C-----C----CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-
Q 045318 254 AIKVTKAILRSICM-------------H-------T-----D----ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY- 303 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~-------------~-------~-----~----~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~- 303 (1388)
.......+.+.+.. . . . ......++...+.+.-+ ++++||+||++..+.
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 44555444443310 0 0 0 12345556555655433 499999999955321
Q ss_pred --hhhhhhcccccCCCCCcEEEEEcCChhHHhhc-----------CC-CceEeCCCCChhhHHHHHHHcccCCCCCCCCc
Q 045318 304 --GDWTSLRLPFVAGASGSKIIVTTRNQSVASMM-----------GS-VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQ 369 (1388)
Q Consensus 304 --~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~-----------~~-~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~ 369 (1388)
.+|..+...+.+...+.++|+|+|.......+ +. ...+++.+|+.+++.+++....-..+ .....
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~-~~~~~ 231 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEAD-IDFKD 231 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHT-CCCCC
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcC-CCCCc
Confidence 12322222222222477899999986532211 11 24789999999999999987431111 11111
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHhhcCCCCHHHHHH-HHhh-------hccCCCCCCCchhHhhHHHHHHHHHHcCCc
Q 045318 370 HLKEIGEEILKKCNGLPLAAKTLGGLLRGKSNPFDWRN-VLNN-------KIWNLPEEGGDIMRALKNDVVLVWMAEGLL 441 (1388)
Q Consensus 370 ~~~~~~~~i~~~c~g~Plai~~~~~~l~~~~~~~~w~~-~~~~-------~~~~~~~~~~~~~~~l~~~li~~wia~g~i 441 (1388)
...|++.++|+|+++..++..+........|.. +.+. ....+... ..-++. ..+.+-..+|.|-
T Consensus 232 -----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~l~~-~~~~~l~~la~g~- 303 (357)
T 2fna_A 232 -----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENFLHG-REIARK-RYLNIMRTLSKCG- 303 (357)
T ss_dssp -----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHTT-CGGGHH-HHHHHHHHHTTCB-
T ss_pred -----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHhhc-cccccH-HHHHHHHHHHcCC-
Confidence 178999999999999999877643323333321 1110 00000000 000111 2333445566542
Q ss_pred CCCCCc-c----------hHHHHHHHHHHHHHhCCCCccccCCCccc-ccchHHHH
Q 045318 442 EPDTSE-M----------KMEELGRSYFRELHSRSFFQKSYMDSRFI-MHDLITDL 485 (1388)
Q Consensus 442 ~~~~~~-~----------~~~~~~~~~~~~L~~~~li~~~~~~~~~~-mHdli~d~ 485 (1388)
. ... . ........+++.|.+.+++.... ..|. -|+++++.
T Consensus 304 ~--~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~--~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 K--WSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG--EKYCPSEPLISLA 355 (357)
T ss_dssp C--HHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS--SCEEESSHHHHHH
T ss_pred C--HHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC--CEEEecCHHHHHh
Confidence 1 000 0 01123457899999999998652 4455 57788765
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=5.1e-12 Score=155.31 Aligned_cols=170 Identities=19% Similarity=0.268 Sum_probs=100.1
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeee
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLN 641 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~ 641 (1388)
..+..|+.|++++|.+..+| .++.+.+|++|+|++|.+..+|. +..+++|+.|+|++|. +..+| .+..+++|++|+
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~ 115 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLS 115 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEE
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEE
Confidence 34555666677777666665 46667777777777777766655 6667777777777663 33333 566667777777
Q ss_pred cCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEE
Q 045318 642 NYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLE 721 (1388)
Q Consensus 642 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~ 721 (1388)
+++|.+ ..++ .++.++ +|+.|+|+
T Consensus 116 Ls~N~l-~~l~-~l~~l~------------------------------------------------------~L~~L~Ls 139 (605)
T 1m9s_A 116 LEHNGI-SDIN-GLVHLP------------------------------------------------------QLESLYLG 139 (605)
T ss_dssp CTTSCC-CCCG-GGGGCT------------------------------------------------------TCSEEECC
T ss_pred ecCCCC-CCCc-cccCCC------------------------------------------------------ccCEEECC
Confidence 766652 2221 233333 33344444
Q ss_pred eeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeec
Q 045318 722 WTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSI 801 (1388)
Q Consensus 722 ~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L 801 (1388)
.|.+... ..+..+++|+.|+++++....++. +. .+++|+.|+|++|.+.. +|.+..+++|+.|+|
T Consensus 140 ~N~l~~l-----------~~l~~l~~L~~L~Ls~N~l~~~~~-l~--~l~~L~~L~Ls~N~i~~-l~~l~~l~~L~~L~L 204 (605)
T 1m9s_A 140 NNKITDI-----------TVLSRLTKLDTLSLEDNQISDIVP-LA--GLTKLQNLYLSKNHISD-LRALAGLKNLDVLEL 204 (605)
T ss_dssp SSCCCCC-----------GGGGSCTTCSEEECCSSCCCCCGG-GT--TCTTCCEEECCSSCCCB-CGGGTTCTTCSEEEC
T ss_pred CCccCCc-----------hhhcccCCCCEEECcCCcCCCchh-hc--cCCCCCEEECcCCCCCC-ChHHccCCCCCEEEc
Confidence 4333321 123344455555555555444443 32 37788888888886654 467788888888888
Q ss_pred cCCcC
Q 045318 802 IGMAL 806 (1388)
Q Consensus 802 ~~~~~ 806 (1388)
++|+.
T Consensus 205 ~~N~l 209 (605)
T 1m9s_A 205 FSQEC 209 (605)
T ss_dssp CSEEE
T ss_pred cCCcC
Confidence 87753
No 107
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.24 E-value=1.3e-11 Score=138.14 Aligned_cols=120 Identities=20% Similarity=0.267 Sum_probs=89.5
Q ss_pred ccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhccc
Q 045318 532 ISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLY 611 (1388)
Q Consensus 532 ~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 611 (1388)
+..+++|+.|. ++.+.+... ..+..+++|++|+|++|.++.++. +.++++|++|++++|.+..+|. +..++
T Consensus 42 ~~~l~~L~~L~-----l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~ 112 (291)
T 1h6t_A 42 QNELNSIDQII-----ANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLK 112 (291)
T ss_dssp HHHHHTCCEEE-----CTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCT
T ss_pred hhhcCcccEEE-----ccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCC
Confidence 34567777774 444444322 346778999999999999998877 8999999999999999998775 89999
Q ss_pred ccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 612 NLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 612 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+|++|++++|. +..+ +.+..+++|++|++++|.+ ..+ ..++.+++|++|
T Consensus 113 ~L~~L~L~~n~-i~~~-~~l~~l~~L~~L~l~~n~l-~~~-~~l~~l~~L~~L 161 (291)
T 1h6t_A 113 KLKSLSLEHNG-ISDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTL 161 (291)
T ss_dssp TCCEEECTTSC-CCCC-GGGGGCTTCCEEECCSSCC-CCC-GGGGGCTTCSEE
T ss_pred CCCEEECCCCc-CCCC-hhhcCCCCCCEEEccCCcC-Ccc-hhhccCCCCCEE
Confidence 99999999985 4444 4688999999999999873 333 234444444444
No 108
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.23 E-value=3e-11 Score=128.08 Aligned_cols=77 Identities=18% Similarity=0.150 Sum_probs=50.2
Q ss_pred eEEEeCCccccccccccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
+.++++++.+..+|..+ ..+|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 35666677777777544 34777777777777776543 5677777777777764332223345677777777777776
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.23 E-value=4.2e-12 Score=139.62 Aligned_cols=167 Identities=21% Similarity=0.299 Sum_probs=102.8
Q ss_pred cCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 563 KLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 563 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.+..+..++++++.++.++ .+..+.+|++|++++|.+..+| .++.+++|++|++++|. +..+|. +.++++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEEC
Confidence 3445566667777777776 5677777888888887777777 57777788888887764 444554 777777888887
Q ss_pred CCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeecccCCCCchhhhhhhcCCCCCCCeEEEEe
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLENVKDSGDARDAELNGKRNLDVLFLEW 722 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~~~~~~~~~~~~~l~~~~~L~~L~L~~ 722 (1388)
++|. +..+|.... .+ |+.|++++
T Consensus 93 ~~N~-l~~l~~~~~--~~------------------------------------------------------L~~L~L~~ 115 (263)
T 1xeu_A 93 NRNR-LKNLNGIPS--AC------------------------------------------------------LSRLFLDN 115 (263)
T ss_dssp CSSC-CSCCTTCCC--SS------------------------------------------------------CCEEECCS
T ss_pred CCCc-cCCcCcccc--Cc------------------------------------------------------ccEEEccC
Confidence 7776 333332111 22 22333333
Q ss_pred eCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEEeeecCCCCCCCCCCCCCCCcceeecc
Q 045318 723 TNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELLRFENCAMCTSLPSIGQLPALKHLSII 802 (1388)
Q Consensus 723 ~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L~~L~L~ 802 (1388)
|.+.+. ..+..+++|+.|+++++....+| .+. .+++|+.|++++|.+... +.+..+++|+.|+++
T Consensus 116 N~l~~~-----------~~l~~l~~L~~L~Ls~N~i~~~~-~l~--~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 116 NELRDT-----------DSLIHLKNLEILSIRNNKLKSIV-MLG--FLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLT 180 (263)
T ss_dssp SCCSBS-----------GGGTTCTTCCEEECTTSCCCBCG-GGG--GCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEE
T ss_pred CccCCC-----------hhhcCcccccEEECCCCcCCCCh-HHc--cCCCCCEEECCCCcCcch-HHhccCCCCCEEeCC
Confidence 322210 11233344444444444444443 232 267888888888877655 678888889999888
Q ss_pred CCc
Q 045318 803 GMA 805 (1388)
Q Consensus 803 ~~~ 805 (1388)
+|.
T Consensus 181 ~N~ 183 (263)
T 1xeu_A 181 GQK 183 (263)
T ss_dssp EEE
T ss_pred CCc
Confidence 875
No 110
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.19 E-value=2.2e-12 Score=150.07 Aligned_cols=82 Identities=15% Similarity=-0.016 Sum_probs=66.1
Q ss_pred EEEeCCcccccc-ccccccCcccceeeccCccccccc-----cchhccc-ccceeecCCCcchhhcchhhccc-----CC
Q 045318 569 VLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLP-----ESVNTLY-NLHTLLLESCSRLKKLCADMGNL-----IK 636 (1388)
Q Consensus 569 ~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-----~~i~~L~-~L~~L~L~~~~~~~~lp~~i~~L-----~~ 636 (1388)
+++++.|.++.. |..+....+|++|+|++|.+...+ ..+.+++ +|++|+|++|......+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 468899999854 555666677999999999999886 6778888 99999999997666657777775 99
Q ss_pred CCeeecCCCCCccc
Q 045318 637 LRHLNNYNVPLLEG 650 (1388)
Q Consensus 637 L~~L~l~~~~~~~~ 650 (1388)
|++|++++|.+...
T Consensus 82 L~~L~Ls~n~l~~~ 95 (362)
T 3goz_A 82 VTSLNLSGNFLSYK 95 (362)
T ss_dssp CCEEECCSSCGGGS
T ss_pred ccEEECcCCcCChH
Confidence 99999999984433
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.18 E-value=1.1e-10 Score=124.32 Aligned_cols=77 Identities=14% Similarity=0.208 Sum_probs=64.5
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcchhhcccCCCCeeecCCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
+.++++++.++.+|..+. .+|++|+|++|.|+.+|. .+..+++|++|+|++|......|..|.++++|++|++++|.
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 568888888988887665 688999999999988865 78889999999999986655567888999999999999887
No 112
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.18 E-value=4.3e-11 Score=131.04 Aligned_cols=148 Identities=17% Similarity=0.192 Sum_probs=83.9
Q ss_pred CCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCc
Q 045318 510 SKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLK 588 (1388)
Q Consensus 510 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~ 588 (1388)
+..++.+.+..+.+.... ...+.++++|++| +++.|.+....+..|..++.|++|+|++|.++.+| ..+..+.
T Consensus 34 ~~~l~~L~L~~n~l~~~~-~~~~~~l~~L~~L-----~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 107 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS-DATFRGLTKLTWL-----NLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLT 107 (251)
T ss_dssp CTTCCEEECTTSCCCCCC-TTTTTTCTTCCEE-----ECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred CCCCCEEEccCCCcCccC-HhHhcCcccCCEE-----ECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccC
Confidence 345556665554433222 1235556666666 34555555444445566666666666666666665 3456666
Q ss_pred ccceeeccCccccccccc-hhcccccceeecCCCcchhhcch-hhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 589 HLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCA-DMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 589 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+|++|+|++|.|+.+|.. +..+++|++|+|++|.. ..+|. .++.+++|++|++++|.+....+..+..+++|++|
T Consensus 108 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 184 (251)
T 3m19_A 108 QLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184 (251)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEE
Confidence 666666666666666543 46666666666666633 33333 46666666666666666332222345555555554
No 113
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.18 E-value=2.5e-11 Score=147.19 Aligned_cols=188 Identities=18% Similarity=0.155 Sum_probs=130.4
Q ss_pred CCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhccccccee
Q 045318 537 HLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTL 616 (1388)
Q Consensus 537 ~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L 616 (1388)
+++.|. ++.+.+.. +|..+ +++|++|+|++|.|+.+| ..+.+|++|+|++|.|+.+|. +.+ +|++|
T Consensus 60 ~L~~L~-----Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQ-----LNRLNLSS-LPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEE-----CCSSCCSC-CCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CccEEE-----eCCCCCCc-cCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 666663 44444443 44433 367999999999999888 557899999999999999988 665 89999
Q ss_pred ecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCCceEeccCCCCCcccccccccccceeEeeccc
Q 045318 617 LLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLPYFVVGKNTGSQLRELKFLENLQVKLKISRLE 696 (1388)
Q Consensus 617 ~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~L~i~~l~ 696 (1388)
++++|. +..+|. .+++|++|++++|. +..+|. .+++|++|. ... +.+.
T Consensus 126 ~Ls~N~-l~~lp~---~l~~L~~L~Ls~N~-l~~lp~---~l~~L~~L~---Ls~---------------------N~L~ 173 (571)
T 3cvr_A 126 DVDNNQ-LTMLPE---LPALLEYINADNNQ-LTMLPE---LPTSLEVLS---VRN---------------------NQLT 173 (571)
T ss_dssp ECCSSC-CSCCCC---CCTTCCEEECCSSC-CSCCCC---CCTTCCEEE---CCS---------------------SCCS
T ss_pred ECCCCc-CCCCCC---cCccccEEeCCCCc-cCcCCC---cCCCcCEEE---CCC---------------------CCCC
Confidence 999985 445776 68999999999998 445665 345555551 111 1111
Q ss_pred CCCCchhhhhhhcCCCCCCCeEEEEeeCCCCCCCCchhHHHHhccCCCCCCcceEEEeccCCCCCCcccCCCCCCCccEE
Q 045318 697 NVKDSGDARDAELNGKRNLDVLFLEWTNSSGSSREPETEKHVLDMLRPHENLKQLAIRGYGGANFPIWLGDSTFSNLELL 776 (1388)
Q Consensus 697 ~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L 776 (1388)
.. +. +. ++|+.|+|++|.+...+. ... .-......|+.|++++|....+|.+++. +++|+.|
T Consensus 174 ~l-------p~-l~--~~L~~L~Ls~N~L~~lp~--~~~----~L~~~~~~L~~L~Ls~N~l~~lp~~l~~--l~~L~~L 235 (571)
T 3cvr_A 174 FL-------PE-LP--ESLEALDVSTNLLESLPA--VPV----RNHHSEETEIFFRCRENRITHIPENILS--LDPTCTI 235 (571)
T ss_dssp CC-------CC-CC--TTCCEEECCSSCCSSCCC--CC------------CCEEEECCSSCCCCCCGGGGG--SCTTEEE
T ss_pred Cc-------ch-hh--CCCCEEECcCCCCCchhh--HHH----hhhcccccceEEecCCCcceecCHHHhc--CCCCCEE
Confidence 11 11 22 788999999988775322 111 0012233449999999999999998876 8999999
Q ss_pred eeecCCCCCCCC
Q 045318 777 RFENCAMCTSLP 788 (1388)
Q Consensus 777 ~L~~~~~~~~l~ 788 (1388)
+|++|.+...+|
T Consensus 236 ~L~~N~l~~~~p 247 (571)
T 3cvr_A 236 ILEDNPLSSRIR 247 (571)
T ss_dssp ECCSSSCCHHHH
T ss_pred EeeCCcCCCcCH
Confidence 999999877655
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.17 E-value=5.1e-11 Score=146.46 Aligned_cols=120 Identities=23% Similarity=0.268 Sum_probs=91.2
Q ss_pred ccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhccc
Q 045318 532 ISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLY 611 (1388)
Q Consensus 532 ~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~ 611 (1388)
+..+++|+.|. ++.+.+.. ...+..+++|+.|+|++|.+..+|. +..+.+|++|+|++|.+..+| .+..++
T Consensus 39 ~~~L~~L~~L~-----l~~n~i~~--l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~ 109 (605)
T 1m9s_A 39 QNELNSIDQII-----ANNSDIKS--VQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLK 109 (605)
T ss_dssp HHHHTTCCCCB-----CTTCCCCC--CTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCT
T ss_pred hhcCCCCCEEE-----CcCCCCCC--ChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCC
Confidence 44567777774 44444433 2357889999999999999998877 899999999999999999887 699999
Q ss_pred ccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 612 NLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 612 ~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+|++|+|++|.. ..+ +.+..|++|+.|++++|.+ ..+ ..++.+++|+.|
T Consensus 110 ~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L~Ls~N~l-~~l-~~l~~l~~L~~L 158 (605)
T 1m9s_A 110 KLKSLSLEHNGI-SDI-NGLVHLPQLESLYLGNNKI-TDI-TVLSRLTKLDTL 158 (605)
T ss_dssp TCCEEECTTSCC-CCC-GGGGGCTTCSEEECCSSCC-CCC-GGGGSCTTCSEE
T ss_pred CCCEEEecCCCC-CCC-ccccCCCccCEEECCCCcc-CCc-hhhcccCCCCEE
Confidence 999999999854 444 4699999999999999973 333 234444444444
No 115
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.15 E-value=3.5e-11 Score=127.56 Aligned_cols=99 Identities=22% Similarity=0.270 Sum_probs=70.9
Q ss_pred ceeeEEEeCCcccccccc-ccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 565 QCLRVLCLREYNICKISN-TIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
+.|++|++++|.++.+|. .+..+.+|++|++++|.++.+|.. +..+++|++|++++|......+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 468888888888887774 468888899999998888888654 578888999999887544333344688888888888
Q ss_pred CCCCCcccCcC-CCCCCCCCCCC
Q 045318 643 YNVPLLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 643 ~~~~~~~~~p~-~i~~L~~L~~L 664 (1388)
++|.+ ..+|. .++.+++|++|
T Consensus 108 ~~N~l-~~~~~~~~~~l~~L~~L 129 (208)
T 2o6s_A 108 NTNQL-QSLPDGVFDKLTQLKDL 129 (208)
T ss_dssp CSSCC-CCCCTTTTTTCTTCCEE
T ss_pred CCCcC-cccCHhHhccCCcCCEE
Confidence 88873 33332 23444444433
No 116
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.15 E-value=1.5e-10 Score=124.29 Aligned_cols=77 Identities=22% Similarity=0.188 Sum_probs=54.1
Q ss_pred eeEEEeCCccccccccccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcc-hhhcccCCCCeeecCC
Q 045318 567 LRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLC-ADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 567 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 644 (1388)
-+.++.+++.+..+|..+. .+|++|+|++|.|..+ |..+..+++|++|+|++|.. ..+| ..+..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l-~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC-CCcChhhcccCCCcCEEECCC
Confidence 3457777777777776554 6777888888777766 56677777777887777753 4444 3457777777777777
Q ss_pred CC
Q 045318 645 VP 646 (1388)
Q Consensus 645 ~~ 646 (1388)
|.
T Consensus 98 N~ 99 (229)
T 3e6j_A 98 NQ 99 (229)
T ss_dssp SC
T ss_pred Cc
Confidence 76
No 117
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.15 E-value=1.4e-10 Score=121.52 Aligned_cols=129 Identities=22% Similarity=0.189 Sum_probs=104.4
Q ss_pred ccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccc
Q 045318 939 QELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQ 1018 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 1018 (1388)
..+++|+.|++++|.++.++ .+..+++|+.|++++| .+..++. +..+++|++|++++|......|.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-----~l~~l~~L~~L~l~~n-~~~~~~~--------l~~l~~L~~L~l~~n~l~~~~~~ 106 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-----GIEYAHNIKDLTINNI-HATNYNP--------ISGLSNLERLRIMGKDVTSDKIP 106 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-----TGGGCTTCSEEEEESC-CCSCCGG--------GTTCTTCCEEEEECTTCBGGGSC
T ss_pred hhcCCccEEeccCCCccChH-----HHhcCCCCCEEEccCC-CCCcchh--------hhcCCCCCEEEeECCccCcccCh
Confidence 56789999999999998775 2788999999999998 5555542 55689999999999988887888
Q ss_pred cccCCCccceEEEccCCCCccChhhhccCCCCCccceeeccCCCccccccccCCCCccEEEeecC
Q 045318 1019 TLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVVDCNSLTYIARVQLPPSLKLLHIQSC 1083 (1388)
Q Consensus 1019 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~sL~~L~l~~c 1083 (1388)
.+..+++|++|++++|......|..+ ..+++|+.|++++|..+..++....+++|+.|++++|
T Consensus 107 ~l~~l~~L~~L~Ls~n~i~~~~~~~l--~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 107 NLSGLTSLTLLDISHSAHDDSILTKI--NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCTTCTTCCEEECCSSBCBGGGHHHH--TTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB
T ss_pred hhcCCCCCCEEEecCCccCcHhHHHH--hhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC
Confidence 89999999999999998777777777 4588899999988875666665555566666666665
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.14 E-value=2.6e-12 Score=157.10 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=54.7
Q ss_pred ccCceeeEEEeCCccccccccccccCcccceeeccCcc--------------ccccccchhcccccceee-cCCCcchhh
Q 045318 562 LKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETL--------------IETLPESVNTLYNLHTLL-LESCSRLKK 626 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~--------------i~~lp~~i~~L~~L~~L~-L~~~~~~~~ 626 (1388)
...+.|+.|+|++|.++.+|.+++++.+|+.|++++|. ...+|..++.|.+|+.|+ ++.| .+..
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~~ 424 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLDD 424 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccch
Confidence 34566667777777777777777777777777776553 223455666667777766 4433 2222
Q ss_pred cch------hhcc--cCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 627 LCA------DMGN--LIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 627 lp~------~i~~--L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++. .+.. ...|++|++++|. +..+|. ++.+++|+.|
T Consensus 425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~-l~~lp~-~~~l~~L~~L 468 (567)
T 1dce_A 425 LRSKFLLENSVLKMEYADVRVLHLAHKD-LTVLCH-LEQLLLVTHL 468 (567)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEECTTSC-CSSCCC-GGGGTTCCEE
T ss_pred hhhhhhhcccccccCccCceEEEecCCC-CCCCcC-ccccccCcEe
Confidence 221 1111 1246666666665 334443 5544444444
No 119
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.14 E-value=3.9e-10 Score=132.58 Aligned_cols=224 Identities=13% Similarity=0.077 Sum_probs=140.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc----cc--CCceEEEEeCCcc-C
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SH--FDLKAWTCVSDDF-D 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~--F~~~~wv~~s~~~-~ 253 (1388)
..++||+++++++.+++...... ...+.|.|+|++|+||||+|+.+++...-. .. ....+|+.+.... +
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 67999999999999887542111 334689999999999999999999853111 01 2345777776666 8
Q ss_pred HHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhh-cccccCCCCCcEEEEEcCChh
Q 045318 254 AIKVTKAILRSICMHTD--ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSL-RLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l-~~~~~~~~~gs~iivTtR~~~ 330 (1388)
...++..++.++.+... ......++...+.+.+..++.+||+||++......+... ...+.....+..||+||+...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~iI~~t~~~~ 175 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDIN 175 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSSCEEEEEECSSTT
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCcceEEEEEECCCc
Confidence 88888999888843322 123345666777777777666999999955321111111 112221116788999998753
Q ss_pred HHh----hc--CCCceEeCCCCChhhHHHHHHHcccC-CCCCCCCchHHHHHHHHHHHcC---CChH-HHHHHHHh--hc
Q 045318 331 VAS----MM--GSVSAYELKKLTDDDCRLVFTQHSLG-TKDFSNHQHLKEIGEEILKKCN---GLPL-AAKTLGGL--LR 397 (1388)
Q Consensus 331 v~~----~~--~~~~~~~l~~L~~~~~~~lf~~~~~~-~~~~~~~~~~~~~~~~i~~~c~---g~Pl-ai~~~~~~--l~ 397 (1388)
... .. .....+.+++++.++..+++...+.. -......+ +..+.+++.++ |.|- |+..+-.+ +.
T Consensus 176 ~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~---~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a 252 (384)
T 2qby_B 176 VRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDD---EILSYIAAISAKEHGDARKAVNLLFRAAQLA 252 (384)
T ss_dssp TTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCS---HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT
T ss_pred hHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 211 11 11238999999999999999987421 11111222 45677788887 8876 44333332 22
Q ss_pred ---CCCCHHHHHHHHhh
Q 045318 398 ---GKSNPFDWRNVLNN 411 (1388)
Q Consensus 398 ---~~~~~~~w~~~~~~ 411 (1388)
..-+.+++..+++.
T Consensus 253 ~~~~~i~~~~v~~~~~~ 269 (384)
T 2qby_B 253 SGGGIIRKEHVDKAIVD 269 (384)
T ss_dssp TSSSCCCHHHHHHHHHH
T ss_pred cCCCccCHHHHHHHHHH
Confidence 22356677766654
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.14 E-value=1.6e-10 Score=123.22 Aligned_cols=77 Identities=10% Similarity=0.028 Sum_probs=56.2
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccccc--chhcccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE--SVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
+++++++|.++.+|..+. ..+++|+|++|.|+.++. .+..+++|++|+|++|......|..|..+++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467888888888886654 346788888888887732 4778888888888887544444456788888888888887
Q ss_pred C
Q 045318 646 P 646 (1388)
Q Consensus 646 ~ 646 (1388)
.
T Consensus 92 ~ 92 (220)
T 2v70_A 92 R 92 (220)
T ss_dssp C
T ss_pred c
Confidence 7
No 121
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.13 E-value=1.8e-11 Score=154.87 Aligned_cols=107 Identities=26% Similarity=0.319 Sum_probs=93.7
Q ss_pred HHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccC
Q 045318 556 SVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLI 635 (1388)
Q Consensus 556 ~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~ 635 (1388)
..+..+..++.|++|+|++|.+..+|..++++.+|++|+|++|.|..+|.+|++|++|++|+|++|. +..+|..|++|+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3456678899999999999999999998999999999999999999999999999999999999986 458899999999
Q ss_pred CCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 636 KLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 636 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
+|++|++++|. +..+|..|+.|++|++|
T Consensus 294 ~L~~L~L~~N~-l~~lp~~~~~l~~L~~L 321 (727)
T 4b8c_D 294 QLKYFYFFDNM-VTTLPWEFGNLCNLQFL 321 (727)
T ss_dssp TCSEEECCSSC-CCCCCSSTTSCTTCCCE
T ss_pred CCCEEECCCCC-CCccChhhhcCCCccEE
Confidence 99999999998 56889889999988888
No 122
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.12 E-value=8e-10 Score=121.13 Aligned_cols=197 Identities=13% Similarity=0.105 Sum_probs=119.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++||+..++.+..++.... ...++.|+|++|+||||+|+.+++.......+.. ......... ..
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~-------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~------~~~~~~~~~-~~ 88 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITA------TPCGVCDNC-RE 88 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTC-------CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCS------SCCSCSHHH-HH
T ss_pred HHHhCcHHHHHHHHHHHHcCC-------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC------CCCcccHHH-HH
Confidence 469999999999999987642 2247899999999999999999875322111100 000000000 00
Q ss_pred HHHHh-----cCCCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhH
Q 045318 261 ILRSI-----CMHTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSV 331 (1388)
Q Consensus 261 i~~~l-----~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v 331 (1388)
+.... ..........+.+...+... ..+++.+||+||++..+...+..+...+.....+..+|+||+....
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 89 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp HHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred HhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 00000 00000111122222222221 2357899999999776656677776666555567888988876432
Q ss_pred H-hh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHh
Q 045318 332 A-SM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGL 395 (1388)
Q Consensus 332 ~-~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 395 (1388)
. .. ......+++++++.++..+++...+...+. ... .+..+.|++.|+|.|..+..+...
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~G~~~~~~~~~~~ 230 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AHE---PRALQLLARAAEGSLRDALSLTDQ 230 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1 11 122357999999999999999887643221 111 356788999999999988877643
No 123
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.11 E-value=7.7e-11 Score=136.69 Aligned_cols=77 Identities=21% Similarity=0.186 Sum_probs=43.6
Q ss_pred eEEEeCCccccccccccccCcccceeeccCccccccccc-hh-cccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPES-VN-TLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
++++++++.++.+|..+. ..+++|+|++|.|+.+|.. +. ++.+|++|+|++|......|..|.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 355666666666665443 2456666666666666443 33 5666666666665433333344666666666666666
Q ss_pred C
Q 045318 646 P 646 (1388)
Q Consensus 646 ~ 646 (1388)
.
T Consensus 99 ~ 99 (361)
T 2xot_A 99 H 99 (361)
T ss_dssp C
T ss_pred c
Confidence 5
No 124
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.10 E-value=8.3e-11 Score=125.39 Aligned_cols=124 Identities=20% Similarity=0.234 Sum_probs=94.8
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccc-hhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPES-VNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 613 (1388)
++++.| +++.|.+....+..|..+++|++|+|++|.|+.+ |..|..+.+|++|+|++|.|+.+|.. +..+++|
T Consensus 32 ~~l~~L-----~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEI-----RLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106 (220)
T ss_dssp TTCCEE-----ECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred cCCCEE-----ECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCC
Confidence 467777 3566666655555678888899999999988877 57888899999999999998888765 5788899
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCC
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++|+|++|......|..|..+++|++|++++|.+....+..+..+++|++|
T Consensus 107 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 157 (220)
T 2v9t_B 107 QLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTM 157 (220)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEE
Confidence 999999886655557778889999999999888443333447777777666
No 125
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.09 E-value=1e-09 Score=129.26 Aligned_cols=197 Identities=14% Similarity=0.072 Sum_probs=127.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++||+.+++++.+++...... .....+.|+|++|+||||+|+.+++..... +.-...+|+.+....+...
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 94 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYR 94 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHH
Confidence 67999999999999988542111 334678999999999999999999863111 0012457788788888899
Q ss_pred HHHHHHHHhcCCCCC-CCcHHHHHHHHHhhc--CCceEEEEEeCCCCCChh--hhhhhc---ccccCC--CCCcEEEEEc
Q 045318 257 VTKAILRSICMHTDA-DDDLNSLQVKLKDGL--SRKKFLLVLDDMWNDNYG--DWTSLR---LPFVAG--ASGSKIIVTT 326 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~-~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~--~~~~l~---~~~~~~--~~gs~iivTt 326 (1388)
++..++.+++..... .....++...+.+.+ .+++.+||+||++..... ..+.+. ...... ..+..+|.||
T Consensus 95 ~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 95 VASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 999999998654332 233555556666665 356899999999653211 122222 211111 3456788888
Q ss_pred CChhH--------HhhcCCCceEeCCCCChhhHHHHHHHccc---CCCCCCCCchHHHHHHHHHHHcC---CChH
Q 045318 327 RNQSV--------ASMMGSVSAYELKKLTDDDCRLVFTQHSL---GTKDFSNHQHLKEIGEEILKKCN---GLPL 387 (1388)
Q Consensus 327 R~~~v--------~~~~~~~~~~~l~~L~~~~~~~lf~~~~~---~~~~~~~~~~~~~~~~~i~~~c~---g~Pl 387 (1388)
+.... ...+. ...+.+.+++.++..+++...+- .... ..+ +..+.++++++ |.|-
T Consensus 175 ~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 175 NSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREHGDAR 243 (387)
T ss_dssp SCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSSCCHH
T ss_pred CCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhccCHH
Confidence 76532 22221 14789999999999999988742 2221 122 34677888887 9993
No 126
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.09 E-value=1.7e-10 Score=122.92 Aligned_cols=119 Identities=19% Similarity=0.192 Sum_probs=90.0
Q ss_pred cccccccchHHH-HhhccCceeeEEEeCCcccccccc-ccccCcccceeeccCcccccccc-chhcccccceeecCCCcc
Q 045318 547 TFSRHFLSDSVV-HMLLKLQCLRVLCLREYNICKISN-TIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSR 623 (1388)
Q Consensus 547 ~~~~~~l~~~~~-~~~~~l~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~ 623 (1388)
+++.|.+....+ ..|..++.|++|+|++|.|+.++. .|..+.+|++|+|++|.+..+|. .+..+++|++|+|++|..
T Consensus 38 ~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 117 (220)
T 2v70_A 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRI 117 (220)
T ss_dssp ECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCC
T ss_pred EcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcC
Confidence 355555554323 235778888888888888887764 78888888888888888888754 478888888888888866
Q ss_pred hhhcchhhcccCCCCeeecCCCCCcccCcCCCCCCCCCCCCC
Q 045318 624 LKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIGHLSCLQTLP 665 (1388)
Q Consensus 624 ~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~ 665 (1388)
....|..+..+++|++|++++|.+....|..++.+++|++|.
T Consensus 118 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 118 TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 555577788888888888888885554467787777777763
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.08 E-value=7.9e-11 Score=119.90 Aligned_cols=123 Identities=22% Similarity=0.251 Sum_probs=85.5
Q ss_pred CCCceeeeecccccccccc-hHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccc-cccchhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLS-DSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIET-LPESVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L 613 (1388)
++|+.|. ++.+.+. +.+|..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.+.. +|..+.++++|
T Consensus 24 ~~L~~L~-----l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 24 AAVRELV-----LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp TSCSEEE-----CCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred ccCCEEE-----CCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 5666663 4444444 34455556777888888888887777 677778888888888888777 66666778888
Q ss_pred ceeecCCCcchhhcc--hhhcccCCCCeeecCCCCCcccCcC----CCCCCCCCCCCCc
Q 045318 614 HTLLLESCSRLKKLC--ADMGNLIKLRHLNNYNVPLLEGMPL----RIGHLSCLQTLPY 666 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~ 666 (1388)
++|++++|. +..+| ..+..+++|++|++++|. +..+|. .+..+++|++|..
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l 154 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDG 154 (168)
T ss_dssp CEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETT
T ss_pred CEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecC
Confidence 888888874 44444 567788888888888877 444554 5677777777743
No 128
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.08 E-value=1.3e-10 Score=124.84 Aligned_cols=122 Identities=20% Similarity=0.285 Sum_probs=99.7
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCccccccccc-hhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPES-VNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L 613 (1388)
++|+.| +++.|.+....+..|..+++|++|+|++|.|..+| ..+..+.+|++|+|++|.|+.+|.. +..+++|
T Consensus 40 ~~L~~L-----~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQIL-----YLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEE-----ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEE-----EcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 678888 46677777666777888999999999999999888 4568999999999999999988664 6889999
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCc-CCCCCCCCCCCC
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMP-LRIGHLSCLQTL 664 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L 664 (1388)
++|+|++|. +..+|..+..+++|++|++++|. +..+| ..+..+++|++|
T Consensus 115 ~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 115 KELFMCCNK-LTELPRGIERLTHLTHLALDQNQ-LKSIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CEEECCSSC-CCSCCTTGGGCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CeEeccCCc-ccccCcccccCCCCCEEECCCCc-CCccCHHHHhCCCCCCEE
Confidence 999999984 56889899999999999999998 44555 346677777766
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.07 E-value=5.4e-11 Score=118.30 Aligned_cols=121 Identities=19% Similarity=0.239 Sum_probs=89.2
Q ss_pred CCCceeeeecccccccccc-hHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccc-cccchhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLS-DSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIET-LPESVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~-~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L 613 (1388)
++|+.|. ++.+.+. +.++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++|
T Consensus 17 ~~l~~L~-----l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELV-----LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEE-----CTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred ccCeEEE-----ccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 5566663 4555554 34555567788888888888888877 678888888888888888887 77777788888
Q ss_pred ceeecCCCcchhhc--chhhcccCCCCeeecCCCCCcccCcC----CCCCCCCCCCC
Q 045318 614 HTLLLESCSRLKKL--CADMGNLIKLRHLNNYNVPLLEGMPL----RIGHLSCLQTL 664 (1388)
Q Consensus 614 ~~L~L~~~~~~~~l--p~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L 664 (1388)
++|++++|.. ..+ |..++.+++|++|++++|. +..+|. .++.+++|+.|
T Consensus 91 ~~L~ls~N~i-~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L 145 (149)
T 2je0_A 91 THLNLSGNKI-KDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYL 145 (149)
T ss_dssp CEEECTTSCC-CSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEE
T ss_pred CEEECCCCcC-CChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccc
Confidence 8888888754 443 3778888888888888887 444554 46667777766
No 130
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.06 E-value=2.4e-10 Score=125.62 Aligned_cols=97 Identities=24% Similarity=0.240 Sum_probs=57.4
Q ss_pred hccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCCCee
Q 045318 561 LLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHL 640 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L 640 (1388)
+..++.|++|++++|.++.+| .++.+.+|++|+|++|.|..+|. +.++++|++|++++|. +..+|. +.. ++|++|
T Consensus 37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~-~~~-~~L~~L 111 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNG-IPS-ACLSRL 111 (263)
T ss_dssp HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTT-CCC-SSCCEE
T ss_pred hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCc-ccc-CcccEE
Confidence 345566666666666666665 56666666666666666666655 6666666666666653 333443 222 666666
Q ss_pred ecCCCCCcccCcCCCCCCCCCCCC
Q 045318 641 NNYNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 641 ~l~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++++|. +..++ .++.+++|+.|
T Consensus 112 ~L~~N~-l~~~~-~l~~l~~L~~L 133 (263)
T 1xeu_A 112 FLDNNE-LRDTD-SLIHLKNLEIL 133 (263)
T ss_dssp ECCSSC-CSBSG-GGTTCTTCCEE
T ss_pred EccCCc-cCCCh-hhcCcccccEE
Confidence 666665 33333 35555555544
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.02 E-value=3.7e-10 Score=114.93 Aligned_cols=135 Identities=22% Similarity=0.233 Sum_probs=108.0
Q ss_pred cCCcceEEEeeccccc--cccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccc-cccccc
Q 045318 509 FSKNLRHFSYPIGHFD--HIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICK-ISNTIG 585 (1388)
Q Consensus 509 ~~~~~r~ls~~~~~~~--~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~ 585 (1388)
.+..++++.+..+.+. .+. ..+..+++|+.|. ++.|.+... ..+..+++|++|+|++|.+.. +|..+.
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~--~~~~~l~~L~~L~-----l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 92 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIE--GLTAEFVNLEFLS-----LINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAE 92 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCS--SCCGGGGGCCEEE-----EESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHH
T ss_pred CcccCCEEECCCCCCChhhHH--HHHHhCCCCCEEe-----CcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHh
Confidence 3466788888776654 222 2357788999995 555555543 667899999999999999997 777788
Q ss_pred cCcccceeeccCccccccc--cchhcccccceeecCCCcchhhcch----hhcccCCCCeeecCCCCCcccCcCC
Q 045318 586 DLKHLRHLDLSETLIETLP--ESVNTLYNLHTLLLESCSRLKKLCA----DMGNLIKLRHLNNYNVPLLEGMPLR 654 (1388)
Q Consensus 586 ~l~~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~~~~~~~~p~~ 654 (1388)
.+++|++|+|++|.+..+| ..+..+++|++|++++|. +..+|. .+..+++|++|++++|. ...+|..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~ 165 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE-DQEAPDS 165 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT-SCBCCSS
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC-hhhcccc
Confidence 8999999999999999987 789999999999999985 455555 78999999999999998 5555543
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.02 E-value=2.1e-10 Score=117.64 Aligned_cols=127 Identities=17% Similarity=0.190 Sum_probs=98.0
Q ss_pred ccccCCCCCceeeeecccccccccchHHHHhhccCc-eeeEEEeCCccccccccccccCcccceeeccCccccccccch-
Q 045318 530 EAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQ-CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESV- 607 (1388)
Q Consensus 530 ~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i- 607 (1388)
..+.++.+|+.|. ++.|.+.. + ..+..+. .|++|+|++|.++.+ ..++.+.+|++|+|++|.|..+|..+
T Consensus 13 ~~~~~~~~L~~L~-----l~~n~l~~-i-~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~ 84 (176)
T 1a9n_A 13 AQYTNAVRDRELD-----LRGYKIPV-I-ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLD 84 (176)
T ss_dssp CEEECTTSCEEEE-----CTTSCCCS-C-CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHH
T ss_pred HhcCCcCCceEEE-----eeCCCCch-h-HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchh
Confidence 3456777888884 55555543 2 2344444 899999999999888 67889999999999999999998665
Q ss_pred hcccccceeecCCCcchhhcch--hhcccCCCCeeecCCCCCcccCcCC----CCCCCCCCCCCc
Q 045318 608 NTLYNLHTLLLESCSRLKKLCA--DMGNLIKLRHLNNYNVPLLEGMPLR----IGHLSCLQTLPY 666 (1388)
Q Consensus 608 ~~L~~L~~L~L~~~~~~~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~ 666 (1388)
+.+++|++|++++|. +..+|. .+..+++|++|++++|. +..+|.. ++.+++|+.|+.
T Consensus 85 ~~l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~ 147 (176)
T 1a9n_A 85 QALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDF 147 (176)
T ss_dssp HHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETT
T ss_pred hcCCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCC
Confidence 899999999999984 466776 78899999999999998 4566664 777788887743
No 133
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.00 E-value=8e-09 Score=111.10 Aligned_cols=185 Identities=14% Similarity=0.069 Sum_probs=116.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-CceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-DLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|++..++++.+++.... ...+.|+|++|+|||++|+.+++.... ..+ ...+.+..+.......+..
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 87 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN--------IPHLLFSGPPGTGKTATAIALARDLFG-ENWRDNFIEMNASDERGIDVVRH 87 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC--------CCCEEEECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEETTCTTCHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHhCCC--------CCeEEEECCCCCCHHHHHHHHHHHHhc-cccccceEEeccccccChHHHHH
Confidence 468999999999999986532 233889999999999999999875211 112 1233344333333322222
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHH-h-hcCC
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVA-S-MMGS 337 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~-~-~~~~ 337 (1388)
.+ ..+.... ..-.+++.+||+||++......++.+...+.....+.++|+||+..... . ....
T Consensus 88 ~~-~~~~~~~--------------~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 88 KI-KEFARTA--------------PIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HH-HHHHTSC--------------CSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HH-HHHhccc--------------CCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHh
Confidence 11 1111000 0113578899999997766555666665555555678899998765321 1 1122
Q ss_pred CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 338 VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 338 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
...+++.+++.++..+++...+...+. ... .+..+.+++.++|.|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~~---~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGV-KIT---EDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTC-CBC---HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 247999999999999999887632111 111 3567788999999998655443
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.99 E-value=4.4e-11 Score=151.24 Aligned_cols=119 Identities=21% Similarity=0.285 Sum_probs=94.0
Q ss_pred cccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcc
Q 045318 531 AISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTL 610 (1388)
Q Consensus 531 ~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 610 (1388)
.+..++.|+.|. ++.|.+. .++..+..+++|++|+|++|.|+.+|..|++|.+|++|+|++|.|+.+|.+|++|
T Consensus 219 ~~~~l~~L~~L~-----Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l 292 (727)
T 4b8c_D 219 SKYDDQLWHALD-----LSNLQIF-NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSC 292 (727)
T ss_dssp ---CCCCCCEEE-----CTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGG
T ss_pred hhccCCCCcEEE-----CCCCCCC-CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCC
Confidence 456677888884 5666654 4555566888899999999999888988899999999999999999899999999
Q ss_pred cccceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCCC
Q 045318 611 YNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRIG 656 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i~ 656 (1388)
++|++|+|++| .+..+|..|++|++|++|++++|.+...+|..++
T Consensus 293 ~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 337 (727)
T 4b8c_D 293 FQLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILT 337 (727)
T ss_dssp TTCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHH
T ss_pred CCCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHh
Confidence 99999999988 4568888899999999999999886555555443
No 135
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.98 E-value=6.3e-09 Score=122.59 Aligned_cols=205 Identities=15% Similarity=0.046 Sum_probs=135.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++||+.+++++.+++.....+. .+..+.+.|+|++|+||||+|+.+++....... ...+|+.++...+...+...
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~--~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP--GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT-ARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST--TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCC-CEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC--CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcC-eeEEEEeCccCCCHHHHHHH
Confidence 679999999999999886521100 022348999999999999999999975221111 24567777777788899999
Q ss_pred HHHHhcCCCCC-CCcHHHHHHHHHhhcC--CceEEEEEeCCCCCChhhhhhhcccccCC-C---CCcEEEEEcCChhHHh
Q 045318 261 ILRSICMHTDA-DDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDNYGDWTSLRLPFVAG-A---SGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 261 i~~~l~~~~~~-~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~---~gs~iivTtR~~~v~~ 333 (1388)
++..++..... .....++...+.+.+. +++.+||+||++..+......+...+... . .+..||+||+......
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~ 173 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLN 173 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHH
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHH
Confidence 99888654322 2344555555555543 66889999999776555555554444221 1 4678888887764433
Q ss_pred hcC-------CCceEeCCCCChhhHHHHHHHcccCCC-CCCCCchHHHHHHHHHHHc---------CCChHHHHH
Q 045318 334 MMG-------SVSAYELKKLTDDDCRLVFTQHSLGTK-DFSNHQHLKEIGEEILKKC---------NGLPLAAKT 391 (1388)
Q Consensus 334 ~~~-------~~~~~~l~~L~~~~~~~lf~~~~~~~~-~~~~~~~~~~~~~~i~~~c---------~g~Plai~~ 391 (1388)
.+. ....+.+.+++.++..+++...+.... .... -.+..+.+++.+ +|.|-.+..
T Consensus 174 ~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~ 245 (389)
T 1fnn_A 174 NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSY---SEDILQMIADITGAQTPLDTNRGDARLAID 245 (389)
T ss_dssp TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSS---CHHHHHHHHHHHSBSSTTCTTSCCHHHHHH
T ss_pred HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCC---CHHHHHHHHHHHhhcccCCCCCCcHHHHHH
Confidence 221 113699999999999999987652100 1111 135678899999 788754433
No 136
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=1.8e-09 Score=127.18 Aligned_cols=202 Identities=15% Similarity=0.106 Sum_probs=127.3
Q ss_pred CCccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC---CceEEEEeCCccCHHH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF---DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F---~~~~wv~~s~~~~~~~ 256 (1388)
+..++||+.+++++.+++...... .....+.|+|++|+||||||+.+++. ....+ ...+|+.+....+...
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~~----~~~~~vli~G~~G~GKTtl~~~l~~~--~~~~~~~~~~~~~i~~~~~~~~~~ 92 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYRE----EKPNNIFIYGLTGTGKTAVVKFVLSK--LHKKFLGKFKHVYINTRQIDTPYR 92 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGGT----CCCCCEEEEECTTSSHHHHHHHHHHH--HHHHTCSSCEEEEEEHHHHCSHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcC----CCCCeEEEECCCCCCHHHHHHHHHHH--HHHHhcCCceEEEEECCCCCCHHH
Confidence 367999999999999988642111 33467899999999999999999985 22222 2456777666667778
Q ss_pred HHHHHHHHhcCCCC-CCCcHHHHHHHHHhhcC--CceEEEEEeCCCCCC----hhhhhhhcccccC-CCCCcEEEEEcCC
Q 045318 257 VTKAILRSICMHTD-ADDDLNSLQVKLKDGLS--RKKFLLVLDDMWNDN----YGDWTSLRLPFVA-GASGSKIIVTTRN 328 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~l~~~~~~-~~~gs~iivTtR~ 328 (1388)
++..++.+++.... ......+....+.+.+. +++.+||+|+++... ...+..+...+.. ...+..+|+||+.
T Consensus 93 ~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~ 172 (386)
T 2qby_A 93 VLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITND 172 (386)
T ss_dssp HHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESC
T ss_pred HHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECC
Confidence 88888877754332 12234455555555553 558999999995421 1223333322211 2345677888876
Q ss_pred hhHHhhcCC-------CceEeCCCCChhhHHHHHHHcccCC-CCCCCCchHHHHHHHHHHHcC---CChHHHH
Q 045318 329 QSVASMMGS-------VSAYELKKLTDDDCRLVFTQHSLGT-KDFSNHQHLKEIGEEILKKCN---GLPLAAK 390 (1388)
Q Consensus 329 ~~v~~~~~~-------~~~~~l~~L~~~~~~~lf~~~~~~~-~~~~~~~~~~~~~~~i~~~c~---g~Plai~ 390 (1388)
......+.. ...+.+++++.++..+++...+... ...... .++.+.+++.++ |.|..+.
T Consensus 173 ~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~ 242 (386)
T 2qby_A 173 VKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRAL 242 (386)
T ss_dssp GGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHH
T ss_pred CChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHH
Confidence 543322111 1479999999999999998764211 111112 355677777777 9987443
No 137
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.96 E-value=7.1e-10 Score=110.13 Aligned_cols=127 Identities=21% Similarity=0.241 Sum_probs=101.3
Q ss_pred CCcceEEEeeccccccccccccccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccc-cccccccCc
Q 045318 510 SKNLRHFSYPIGHFDHIRRFEAISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICK-ISNTIGDLK 588 (1388)
Q Consensus 510 ~~~~r~ls~~~~~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~-lp~~i~~l~ 588 (1388)
+..++++.+..+......-...+..+++|+.|. ++.|.+... ..+..+++|++|++++|.++. +|..++.++
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~-----l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 88 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLS-----TINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCP 88 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEE-----CTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCT
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEE-----CcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCC
Confidence 456778877766554111123457889999994 666666554 667899999999999999997 888888899
Q ss_pred ccceeeccCccccccc--cchhcccccceeecCCCcchhhcch----hhcccCCCCeeecCC
Q 045318 589 HLRHLDLSETLIETLP--ESVNTLYNLHTLLLESCSRLKKLCA----DMGNLIKLRHLNNYN 644 (1388)
Q Consensus 589 ~Lr~L~L~~~~i~~lp--~~i~~L~~L~~L~L~~~~~~~~lp~----~i~~L~~L~~L~l~~ 644 (1388)
+|++|++++|.++.+| ..++.+++|++|++++|. +...|. .++.+++|++|++++
T Consensus 89 ~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 89 NLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp TCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999999875 889999999999999985 455554 789999999998863
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.95 E-value=9.2e-10 Score=114.48 Aligned_cols=95 Identities=16% Similarity=0.045 Sum_probs=50.3
Q ss_pred eEEEeCCccccccccccccCcccceeeccCccccccccc--hhcccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPES--VNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
++++++++.++.+|..+.. +|++|++++|.|..+|.. ++.+++|++|+|++|......|..|.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4555566655555554433 556666666666555442 555666666666655444444555556666666666665
Q ss_pred CCcccCcCCCCCCCCCCCC
Q 045318 646 PLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 646 ~~~~~~p~~i~~L~~L~~L 664 (1388)
.+....|..++.+++|++|
T Consensus 89 ~l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp CCCEECSSSSTTCTTCCEE
T ss_pred cCCccCHHHhcCCCCCCEE
Confidence 5333223334444444444
No 139
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.94 E-value=1.3e-09 Score=113.08 Aligned_cols=81 Identities=25% Similarity=0.235 Sum_probs=38.8
Q ss_pred eeeEEEeCCccccccccccccCcccceeeccCccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeecCC
Q 045318 566 CLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~ 644 (1388)
.|++|+|++|.|+.+|..+..+.+|++|+|++|.|+.+| ..|.++++|++|+|++|......|..|..+++|++|++++
T Consensus 32 ~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~ 111 (193)
T 2wfh_A 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHG 111 (193)
T ss_dssp TCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCC
Confidence 445555555555555544555555555555555555443 2344555555555555433332233444555555555555
Q ss_pred CC
Q 045318 645 VP 646 (1388)
Q Consensus 645 ~~ 646 (1388)
|.
T Consensus 112 N~ 113 (193)
T 2wfh_A 112 ND 113 (193)
T ss_dssp SC
T ss_pred CC
Confidence 44
No 140
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.92 E-value=9e-10 Score=134.59 Aligned_cols=104 Identities=20% Similarity=0.161 Sum_probs=76.0
Q ss_pred ccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhc
Q 045318 548 FSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKL 627 (1388)
Q Consensus 548 ~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~l 627 (1388)
++.|.+.. +|. +..+++|++|+|++|.|+.+|..++.+++|++|+|++|.|+.+| .++++++|++|+|++|......
T Consensus 448 Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 448 LAHKDLTV-LCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp CTTSCCSS-CCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred ecCCCCCC-CcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCC
Confidence 44555543 333 67777888888888888888888888888888888888888887 7888888888888887544433
Q ss_pred -chhhcccCCCCeeecCCCCCcccCcCCC
Q 045318 628 -CADMGNLIKLRHLNNYNVPLLEGMPLRI 655 (1388)
Q Consensus 628 -p~~i~~L~~L~~L~l~~~~~~~~~p~~i 655 (1388)
|..++.|++|++|++++|. +...|..+
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~-l~~~~~~~ 552 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNS-LCQEEGIQ 552 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSG-GGGSSSCT
T ss_pred CcHHHhcCCCCCEEEecCCc-CCCCccHH
Confidence 7788888888888888887 44444433
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.91 E-value=1e-09 Score=114.02 Aligned_cols=99 Identities=24% Similarity=0.313 Sum_probs=75.2
Q ss_pred eeeEEEeCCcccccccc--ccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchhhcccCCCCeeec
Q 045318 566 CLRVLCLREYNICKISN--TIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNN 642 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~--~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l 642 (1388)
.|++|+|++|.++.++. .++.+++|++|+|++|.|+.+ |..++.+++|++|+|++|......|..+..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 67888888888887764 378888888888888888877 677888888888888887655444555778888888888
Q ss_pred CCCCCcccCcCCCCCCCCCCCC
Q 045318 643 YNVPLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 643 ~~~~~~~~~p~~i~~L~~L~~L 664 (1388)
++|.+....|..++.+++|++|
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L 131 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSL 131 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEE
T ss_pred CCCcCCeeCHHHhhcCCCCCEE
Confidence 8887655556677777777666
No 142
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.88 E-value=2.5e-09 Score=111.10 Aligned_cols=104 Identities=19% Similarity=0.260 Sum_probs=80.1
Q ss_pred CCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccc-cccccCcccceeeccCcccccccc-chhccccc
Q 045318 536 KHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPE-SVNTLYNL 613 (1388)
Q Consensus 536 ~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 613 (1388)
++|+.|. ++.|.+. .+|..|..+++|++|+|++|.|+.++ ..|..+.+|++|+|++|.|..+|. .+..+++|
T Consensus 31 ~~l~~L~-----L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L 104 (193)
T 2wfh_A 31 RDVTELY-----LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSL 104 (193)
T ss_dssp TTCCEEE-----CCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTC
T ss_pred CCCCEEE-----CCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCC
Confidence 4677774 5555554 34567788888888888888888776 568888888888888888888854 68888888
Q ss_pred ceeecCCCcchhhcch-hhcccCCCCeeecCCCC
Q 045318 614 HTLLLESCSRLKKLCA-DMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~~ 646 (1388)
++|+|++|.. ..+|. .+..+++|++|++++|.
T Consensus 105 ~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 105 RLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEECCCCCC-CeeChhhhhcCccccEEEeCCCC
Confidence 8888888754 44544 57888888888888886
No 143
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.87 E-value=2.1e-09 Score=110.15 Aligned_cols=127 Identities=18% Similarity=0.213 Sum_probs=103.7
Q ss_pred CCcceEEEeeccccccccccccccCCC-CCceeeeecccccccccchHHHHhhccCceeeEEEeCCcccccccccc-ccC
Q 045318 510 SKNLRHFSYPIGHFDHIRRFEAISDCK-HLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTI-GDL 587 (1388)
Q Consensus 510 ~~~~r~ls~~~~~~~~~~~~~~~~~~~-~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i-~~l 587 (1388)
...++.+.+..+.+..+ +.+..+. +|+.| +++.|.+... ..+..+++|++|+|++|.++.+|..+ +.+
T Consensus 18 ~~~L~~L~l~~n~l~~i---~~~~~~~~~L~~L-----~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVI---ENLGATLDQFDAI-----DFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp TTSCEEEECTTSCCCSC---CCGGGGTTCCSEE-----ECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred cCCceEEEeeCCCCchh---HHhhhcCCCCCEE-----ECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 45577787777665433 3344544 89999 4667776653 57789999999999999999998655 999
Q ss_pred cccceeeccCcccccccc--chhcccccceeecCCCcchhhcchh----hcccCCCCeeecCCCCC
Q 045318 588 KHLRHLDLSETLIETLPE--SVNTLYNLHTLLLESCSRLKKLCAD----MGNLIKLRHLNNYNVPL 647 (1388)
Q Consensus 588 ~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~----i~~L~~L~~L~l~~~~~ 647 (1388)
++|++|+|++|.|..+|. .++.+++|++|++++|. +..+|.. ++.+++|++|++++|..
T Consensus 88 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999999999997 89999999999999985 4567765 89999999999998873
No 144
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.86 E-value=1.3e-09 Score=126.22 Aligned_cols=122 Identities=24% Similarity=0.236 Sum_probs=86.3
Q ss_pred CCceeeeecccccccccchHHHHhhc-cCceeeEEEeCCccccccc-cccccCcccceeeccCcccccccc-chhccccc
Q 045318 537 HLRTFVSVQWTFSRHFLSDSVVHMLL-KLQCLRVLCLREYNICKIS-NTIGDLKHLRHLDLSETLIETLPE-SVNTLYNL 613 (1388)
Q Consensus 537 ~Lr~L~~~~~~~~~~~l~~~~~~~~~-~l~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L 613 (1388)
.++.| +++.|.+....+..+. .+++|++|+|++|.|+.++ ..|..+.+|++|+|++|.|+.+|. .+..+.+|
T Consensus 40 ~l~~L-----~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 114 (361)
T 2xot_A 40 YTALL-----DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQAL 114 (361)
T ss_dssp TCSEE-----ECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred CCCEE-----ECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCC
Confidence 45666 4566666554455555 7888888888888888776 468888888888888888887754 57788888
Q ss_pred ceeecCCCcchhhcchhhcccCCCCeeecCCCCCcccCcCCC----CCCCCCCCC
Q 045318 614 HTLLLESCSRLKKLCADMGNLIKLRHLNNYNVPLLEGMPLRI----GHLSCLQTL 664 (1388)
Q Consensus 614 ~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~i----~~L~~L~~L 664 (1388)
++|+|++|......|..|..+++|++|++++|. +..+|..+ +.+++|+.|
T Consensus 115 ~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L 168 (361)
T 2xot_A 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLL 168 (361)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEE
T ss_pred CEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEE
Confidence 888888876555556778888888888888887 45566543 345555544
No 145
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.80 E-value=1.8e-10 Score=120.83 Aligned_cols=111 Identities=24% Similarity=0.283 Sum_probs=73.8
Q ss_pred cccCCCCCceeeeecccccccccchHHHHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcc
Q 045318 531 AISDCKHLRTFVSVQWTFSRHFLSDSVVHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTL 610 (1388)
Q Consensus 531 ~~~~~~~Lr~L~~~~~~~~~~~l~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L 610 (1388)
.+..+++|++|. ++.|.+.. ++ .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .++.+
T Consensus 43 ~~~~l~~L~~L~-----ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l 114 (198)
T 1ds9_A 43 TLSTLKACKHLA-----LSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL 114 (198)
T ss_dssp HHHHTTTCSEEE-----CSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHH
T ss_pred HHhcCCCCCEEE-----CCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccC
Confidence 455667777773 44444443 33 556677777777777777777776677777777777777777776 57777
Q ss_pred cccceeecCCCcchhhcc--hhhcccCCCCeeecCCCCCccc
Q 045318 611 YNLHTLLLESCSRLKKLC--ADMGNLIKLRHLNNYNVPLLEG 650 (1388)
Q Consensus 611 ~~L~~L~L~~~~~~~~lp--~~i~~L~~L~~L~l~~~~~~~~ 650 (1388)
++|++|++++|. +..+| ..+..+++|++|++++|.+...
T Consensus 115 ~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 777777777764 33333 3567777777777777764333
No 146
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.80 E-value=3.3e-08 Score=112.91 Aligned_cols=186 Identities=17% Similarity=0.167 Sum_probs=115.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-CceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-DLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|++..++.+.+++... ..+.+.|+|++|+||||+|+.+++... ...+ ...+++..+....... .+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~~~~-i~ 90 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDG--------NMPHMIISGMPGIGKTTSVHCLAHELL-GRSYADGVLELNASDDRGIDV-VR 90 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSC--------CCCCEEEECSTTSSHHHHHHHHHHHHH-GGGHHHHEEEECTTSCCSHHH-HH
T ss_pred HHHHCCHHHHHHHHHHHHcC--------CCCeEEEECcCCCCHHHHHHHHHHHhc-CCcccCCEEEecCccccChHH-HH
Confidence 46899999999999998653 223388999999999999999997521 1111 1233333333222222 12
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhc-CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhH-Hhh-cC
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGL-SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSV-ASM-MG 336 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~~ 336 (1388)
++++.+... ...+ .+++.+||+||++.-....+..+...+.....++++|+||+...- ... ..
T Consensus 91 ~~~~~~~~~--------------~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~s 156 (323)
T 1sxj_B 91 NQIKHFAQK--------------KLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQS 156 (323)
T ss_dssp THHHHHHHB--------------CCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHT
T ss_pred HHHHHHHhc--------------cccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHh
Confidence 222221100 0012 456889999999876655666666555555567888888876431 111 12
Q ss_pred CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHH
Q 045318 337 SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTLGG 394 (1388)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~~ 394 (1388)
....+++.++++++..+++...+...+ .... .+....|++.++|.|. |+..+..
T Consensus 157 r~~~i~~~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 157 QCAILRYSKLSDEDVLKRLLQIIKLED-VKYT---NDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TSEEEECCCCCHHHHHHHHHHHHHHHT-CCBC---HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hceEEeecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 235899999999999999987653211 1111 3567889999999995 4444443
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.80 E-value=1.3e-08 Score=116.15 Aligned_cols=255 Identities=16% Similarity=0.090 Sum_probs=135.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|++..++++..++....... .....|.|+|++|+|||++|+++++.. ... .+++..+......+
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~---~~~~~vll~G~~GtGKT~la~~i~~~~--~~~---~~~~~~~~~~~~~~---- 79 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK---EPLEHLLLFGPPGLGKTTLAHVIAHEL--GVN---LRVTSGPAIEKPGD---- 79 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC---SCCCCCEEECCTTCCCHHHHHHHHHHH--TCC---EEEECTTTCCSHHH----
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC---CCCCcEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEeccccCChHH----
Confidence 469999999998888775311000 122467899999999999999998752 222 23333332222211
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC------------------CCCcEE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG------------------ASGSKI 322 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~------------------~~gs~i 322 (1388)
+...+...+ .+..+|++||+..........+...+... ..+.++
T Consensus 80 -----------------l~~~l~~~~-~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~ 141 (324)
T 1hqc_A 80 -----------------LAAILANSL-EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTL 141 (324)
T ss_dssp -----------------HHHHHTTTC-CTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEE
T ss_pred -----------------HHHHHHHhc-cCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEE
Confidence 111222111 34568999999765443444333222211 123567
Q ss_pred EEEcCChh-HHhhc-C-CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHhhcC-
Q 045318 323 IVTTRNQS-VASMM-G-SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGLLRG- 398 (1388)
Q Consensus 323 ivTtR~~~-v~~~~-~-~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~l~~- 398 (1388)
|.||.... +...+ . ....+.+.+++.++..+++...+...+ .... .+....++++++|.|-.+..+...+..
T Consensus 142 i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~-~~~~---~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 142 IGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLG-VRIT---EEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcC-CCCC---HHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 77666432 11111 1 124789999999999998887763222 1122 356788999999999887766544321
Q ss_pred -----C--CCHHHHHHHHhhhccC---CCCCCCchhH-------------------------hhHHHHHHHHHHcCCcCC
Q 045318 399 -----K--SNPFDWRNVLNNKIWN---LPEEGGDIMR-------------------------ALKNDVVLVWMAEGLLEP 443 (1388)
Q Consensus 399 -----~--~~~~~w~~~~~~~~~~---~~~~~~~~~~-------------------------~l~~~li~~wia~g~i~~ 443 (1388)
. -+.+....++...... +...+..++. .+..++-++-+..|++..
T Consensus 218 a~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEE
T ss_pred HHHhcCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhc
Confidence 1 2334444444321110 0000000000 002223334556777765
Q ss_pred CCCcchHHHHHHHHHH-HHHhCCCCcc
Q 045318 444 DTSEMKMEELGRSYFR-ELHSRSFFQK 469 (1388)
Q Consensus 444 ~~~~~~~~~~~~~~~~-~L~~~~li~~ 469 (1388)
...+....+.|..||+ ++.+|++||+
T Consensus 298 ~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (324)
T 1hqc_A 298 TPRGRVPTELAYRHLGYPPPVGPLLEP 324 (324)
T ss_dssp ETTEEEECHHHHHHTTCCCCC------
T ss_pred CCccceecHHHHHHHhcCCCCCCCCCC
Confidence 4555666777788886 7778887774
No 148
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.73 E-value=2.7e-10 Score=119.42 Aligned_cols=103 Identities=25% Similarity=0.325 Sum_probs=88.7
Q ss_pred HHhhccCceeeEEEeCCccccccccccccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhcccCCC
Q 045318 558 VHMLLKLQCLRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMGNLIKL 637 (1388)
Q Consensus 558 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L 637 (1388)
+..+..+++|++|+|++|.++.+| .++.+++|++|++++|.+..+|..+..+++|++|++++| .+..+| .+..+++|
T Consensus 41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L 117 (198)
T 1ds9_A 41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNL 117 (198)
T ss_dssp HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHS
T ss_pred hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCC
Confidence 347788999999999999999998 899999999999999999999999999999999999998 455566 69999999
Q ss_pred CeeecCCCCCcccCcC--CCCCCCCCCCC
Q 045318 638 RHLNNYNVPLLEGMPL--RIGHLSCLQTL 664 (1388)
Q Consensus 638 ~~L~l~~~~~~~~~p~--~i~~L~~L~~L 664 (1388)
++|++++|. +..+|. .++.+++|++|
T Consensus 118 ~~L~l~~N~-i~~~~~~~~l~~l~~L~~L 145 (198)
T 1ds9_A 118 RVLYMSNNK-ITNWGEIDKLAALDKLEDL 145 (198)
T ss_dssp SEEEESEEE-CCCHHHHHHHTTTTTCSEE
T ss_pred CEEECCCCc-CCchhHHHHHhcCCCCCEE
Confidence 999999998 444443 56677777766
No 149
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.73 E-value=1e-08 Score=105.19 Aligned_cols=81 Identities=21% Similarity=0.267 Sum_probs=38.1
Q ss_pred eeeEEEeCCcccccccc-ccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcchhhcccCCCCeeecC
Q 045318 566 CLRVLCLREYNICKISN-TIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNY 643 (1388)
Q Consensus 566 ~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 643 (1388)
.|++|++++|.++.+|. .++.+.+|++|++++|.+..+|.. ++.+++|++|++++|......+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 108 (177)
T 2o6r_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALD 108 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECc
Confidence 44555555555554442 334555555555555555544332 3455555555555543222222234455555555555
Q ss_pred CCC
Q 045318 644 NVP 646 (1388)
Q Consensus 644 ~~~ 646 (1388)
+|.
T Consensus 109 ~N~ 111 (177)
T 2o6r_A 109 TNQ 111 (177)
T ss_dssp SSC
T ss_pred CCc
Confidence 554
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.69 E-value=3.5e-08 Score=101.10 Aligned_cols=94 Identities=20% Similarity=0.243 Sum_probs=76.3
Q ss_pred eeEEEeCCccccccccccccCcccceeeccCcccccccc-chhcccccceeecCCCcchhhcc-hhhcccCCCCeeecCC
Q 045318 567 LRVLCLREYNICKISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCSRLKKLC-ADMGNLIKLRHLNNYN 644 (1388)
Q Consensus 567 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~ 644 (1388)
.+.++++++.+..+|..+. .+|++|++++|.+..+|. .++.+++|++|++++|.. ..+| ..+..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQI-QSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcc-eEeChhHccCCCccCEEECCC
Confidence 4678999999999996554 799999999999999876 468999999999999855 4554 4579999999999999
Q ss_pred CCCcccCcC-CCCCCCCCCCC
Q 045318 645 VPLLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 645 ~~~~~~~p~-~i~~L~~L~~L 664 (1388)
|.+ ..+|. .++.+++|++|
T Consensus 86 N~l-~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 86 NKL-QSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp SCC-CCCCTTTTTTCTTCCEE
T ss_pred CCc-cccCHHHhhCCcccCEE
Confidence 984 44554 46777777766
No 151
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.68 E-value=2.3e-08 Score=101.67 Aligned_cols=81 Identities=26% Similarity=0.379 Sum_probs=49.2
Q ss_pred ceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcchh-hcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCAD-MGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~ 641 (1388)
+.|++|+|++|.|+.+ |..|+++.+|++|+|++|.|+.+|.. +.++++|++|+|++|. +..+|.. +..+++|++|+
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHHhccccCCCEEE
Confidence 5566666666666655 34566666666666666666666554 3566666666666653 3334433 66666666666
Q ss_pred cCCCC
Q 045318 642 NYNVP 646 (1388)
Q Consensus 642 l~~~~ 646 (1388)
+++|.
T Consensus 112 L~~N~ 116 (174)
T 2r9u_A 112 LYNNP 116 (174)
T ss_dssp CCSSC
T ss_pred eCCCC
Confidence 66665
No 152
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.68 E-value=2.3e-08 Score=101.39 Aligned_cols=93 Identities=20% Similarity=0.251 Sum_probs=44.3
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcch-hhcccCCCCeeecCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCA-DMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~l~~~ 645 (1388)
+++++++|.++.+|..+. .+|++|+|++|.|+.+ |..+.++++|++|+|++|.. ..+|. .+..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL-TVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc-CccChhhccCCCCCCEEECCCC
Confidence 445555555555554432 4555555555555554 33455555555555555432 23322 2345555555555555
Q ss_pred CCcccCcC-CCCCCCCCCCC
Q 045318 646 PLLEGMPL-RIGHLSCLQTL 664 (1388)
Q Consensus 646 ~~~~~~p~-~i~~L~~L~~L 664 (1388)
. +..+|. .++.+++|++|
T Consensus 89 ~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 89 Q-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp C-CCCCCTTTTTTCTTCCEE
T ss_pred c-cCEeCHHHhcCCCCCCEE
Confidence 4 223332 24444444444
No 153
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.64 E-value=1.3e-07 Score=107.92 Aligned_cols=82 Identities=12% Similarity=-0.023 Sum_probs=52.2
Q ss_pred CCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCC--------CCcceEEEecCCCC
Q 045318 941 LPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGL--------PCRLHYLELRSCPS 1012 (1388)
Q Consensus 941 l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~--------l~~L~~L~L~~~~~ 1012 (1388)
+++|+.|++++|++...... .+.++.++.+..... .++... +.. +++|+.|+|.+ ..
T Consensus 48 l~~L~~LdLs~n~i~~~~~~----~~~~~~~~~~~~~~~----~I~~~a------F~~~~~~~~~g~~~L~~l~L~~-~i 112 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGK----AGTYPNGKFYIYMAN----FVPAYA------FSNVVNGVTKGKQTLEKVILSE-KI 112 (329)
T ss_dssp CTTCCEEEEEEEEECCEEES----SSSSGGGCCEEECTT----EECTTT------TEEEETTEEEECTTCCC-CBCT-TC
T ss_pred hccCeEEecCcceeEEecCc----ccccccccccccccc----ccCHHH------hcccccccccccCCCcEEECCc-cc
Confidence 78899999999998832211 122233334444332 233332 555 78899999888 45
Q ss_pred cccccccccCCCccceEEEccCCCC
Q 045318 1013 LVKLPQTLLSLSSLRQLKISECHSM 1037 (1388)
Q Consensus 1013 ~~~~p~~~~~l~~L~~L~l~~~~~l 1037 (1388)
...-+.+|.++++|+.|++.+|...
T Consensus 113 ~~I~~~aF~~~~~L~~l~l~~n~i~ 137 (329)
T 3sb4_A 113 KNIEDAAFKGCDNLKICQIRKKTAP 137 (329)
T ss_dssp CEECTTTTTTCTTCCEEEBCCSSCC
T ss_pred cchhHHHhhcCcccceEEcCCCCcc
Confidence 5555567888899999999888644
No 154
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.63 E-value=1.5e-06 Score=101.01 Aligned_cols=204 Identities=12% Similarity=0.161 Sum_probs=124.6
Q ss_pred ccCceeEecCCCccccCCCCCCccccccEEeccCCCccccccCCCCCCCcceeccchhhhhhhccccceEeecCCCCccc
Q 045318 1138 TLEDIKVKNCSKLLFLSKRGALPKVLKDLYIYECSELESIAEGLDNDSSVETITFGAVQFLKFYLKLTMLDINGCEKLMA 1217 (1388)
Q Consensus 1138 sL~~L~l~~c~~l~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~l~~l~l~~~~~l~~l~~L~~L~l~~~~~L~~ 1217 (1388)
+|+.+++.+ +.+..++......++|+.+.+.. +++.++...+ ..+++|+.++|.. +++.
T Consensus 181 ~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF----------------~~~~~L~~l~l~~--~l~~ 239 (401)
T 4fdw_A 181 NLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAF----------------LKTSQLKTIEIPE--NVST 239 (401)
T ss_dssp TCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTT----------------TTCTTCCCEECCT--TCCE
T ss_pred cCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHh----------------hCCCCCCEEecCC--CccC
Confidence 355555543 34445544444445566666653 3444443322 4456666666654 3555
Q ss_pred cCCcCCc-CccceEEeccCCCCcccCCCCC--CCccceeecccccCC----cchhcccccccCccceeEecCCCCCcccc
Q 045318 1218 LPNNLHQ-FSIEILLIQDCPSLGSFTADCF--PTKVSALGIDYLTIH----KPFFELGLRRFTSLRELRLYGGSRDVVAF 1290 (1388)
Q Consensus 1218 l~~~~~~-~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~~~l~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 1290 (1388)
++...+. .+|+.+.+.+ +++.++...| +++|+.+.+.++.+. ..+....+.++++|+.+++.. .+..+
T Consensus 240 I~~~aF~~~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~---~i~~I 314 (401)
T 4fdw_A 240 IGQEAFRESGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE---SIRIL 314 (401)
T ss_dssp ECTTTTTTCCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT---TCCEE
T ss_pred ccccccccCCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC---ceEEE
Confidence 5544333 6677776643 3455544433 256777776665532 124445677888999998875 36666
Q ss_pred CcccccccCCCccceeecccCCCCCCcc--CCCCCCCcCcEeecCCCCCccCCCC---CCCCccceeeeccCcchHHHhc
Q 045318 1291 PPEDTKMALPASLTFLWIDNFPNLLRLS--SIENLTSLQFLRFRNCPKLEYFPEN---GLPTSLLRLQIIACPLMKERCK 1365 (1388)
Q Consensus 1291 ~~~~~~~~~~~sL~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~c~~l~~l~~~---~l~~sL~~L~i~~c~~L~~~~~ 1365 (1388)
+...+ ..+++|+.+.+.+. ++.+. .|.++ +|+.+.+.+ +.+..++.. +++.++..|++..-. .+.++
T Consensus 315 ~~~aF--~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~-n~~~~l~~~~F~~~~~~l~~l~vp~~~--~~~y~ 386 (401)
T 4fdw_A 315 GQGLL--GGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEG-TTPPQVFEKVWYGFPDDITVIRVPAES--VEKYK 386 (401)
T ss_dssp CTTTT--TTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECC-SSCCBCCCSSCCCSCTTCCEEEECGGG--HHHHH
T ss_pred hhhhh--cCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcC-CCCcccccccccCCCCCccEEEeCHHH--HHHhh
Confidence 66553 55678888888654 77777 78888 999999998 466666654 456788899887733 55666
Q ss_pred ccCCCCCCcccc
Q 045318 1366 KEKGHYWPLIAD 1377 (1388)
Q Consensus 1366 ~~~~~~~~~~~~ 1377 (1388)
.+.+ |....+
T Consensus 387 ~a~~--W~~f~~ 396 (401)
T 4fdw_A 387 NANG--WRDFTN 396 (401)
T ss_dssp HSTT--GGGGGG
T ss_pred hccc--hhhhhh
Confidence 5444 877654
No 155
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.63 E-value=2.3e-08 Score=101.67 Aligned_cols=94 Identities=20% Similarity=0.316 Sum_probs=77.8
Q ss_pred eEEEeCCccccccccccccCcccceeeccCcccccc-ccchhcccccceeecCCCcchhhcchh-hcccCCCCeeecCCC
Q 045318 568 RVLCLREYNICKISNTIGDLKHLRHLDLSETLIETL-PESVNTLYNLHTLLLESCSRLKKLCAD-MGNLIKLRHLNNYNV 645 (1388)
Q Consensus 568 r~L~L~~~~i~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~-i~~L~~L~~L~l~~~ 645 (1388)
+.++++++.+..+|..+. .+|++|+|++|.|..+ |..++++++|++|+|++|. +..+|.. +.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCC
Confidence 678999999999998775 8999999999999988 6678999999999999984 5556654 689999999999999
Q ss_pred CCcccCcCC-CCCCCCCCCCC
Q 045318 646 PLLEGMPLR-IGHLSCLQTLP 665 (1388)
Q Consensus 646 ~~~~~~p~~-i~~L~~L~~L~ 665 (1388)
. +..+|.. ++.+++|++|.
T Consensus 92 ~-l~~l~~~~~~~l~~L~~L~ 111 (174)
T 2r9u_A 92 H-LKSIPRGAFDNLKSLTHIY 111 (174)
T ss_dssp C-CCCCCTTTTTTCTTCSEEE
T ss_pred c-cceeCHHHhccccCCCEEE
Confidence 8 5566654 88888888773
No 156
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=98.61 E-value=2.2e-07 Score=106.30 Aligned_cols=185 Identities=14% Similarity=0.072 Sum_probs=114.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccC-CceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF-DLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F-~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|++..++.+..++... ....+.|+|++|+||||+|+.+++...- ..+ ...+.+..+....... ..
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~la~~l~~~l~~-~~~~~~~~~~~~~~~~~~~~-~~ 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTG--------SMPHLLFAGPPGVGKTTAALALARELFG-ENWRHNFLELNASDERGINV-IR 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHT--------CCCEEEEESCTTSSHHHHHHHHHHHHHG-GGHHHHEEEEETTCHHHHHT-TH
T ss_pred HHhhCCHHHHHHHHHHHHcC--------CCCeEEEECcCCCCHHHHHHHHHHHhcC-CcccCceEEeeccccCchHH-HH
Confidence 45899999999999988763 2234889999999999999999975211 111 1123333222111111 11
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHh--hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhH-Hhh-c
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKD--GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSV-ASM-M 335 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~--~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v-~~~-~ 335 (1388)
..+.. .... ...+++.++|+||++.-....+..+...+.....++++|+||....- ... .
T Consensus 95 ~~~~~----------------~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~ 158 (327)
T 1iqp_A 95 EKVKE----------------FARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ 158 (327)
T ss_dssp HHHHH----------------HHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHH
T ss_pred HHHHH----------------HHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHH
Confidence 11111 1100 11267889999999876656666676665555567889888876431 111 1
Q ss_pred CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHHh
Q 045318 336 GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLGGL 395 (1388)
Q Consensus 336 ~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~~~ 395 (1388)
.....+++.++++++..+++...+...+ ... -.+..+.|++.++|.|-.+..+...
T Consensus 159 sr~~~~~~~~l~~~~~~~~l~~~~~~~~-~~~---~~~~~~~l~~~~~g~~r~~~~~l~~ 214 (327)
T 1iqp_A 159 SRCAIFRFRPLRDEDIAKRLRYIAENEG-LEL---TEEGLQAILYIAEGDMRRAINILQA 214 (327)
T ss_dssp HTEEEEECCCCCHHHHHHHHHHHHHTTT-CEE---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhCcEEEecCCCHHHHHHHHHHHHHhcC-CCC---CHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 1124789999999999999887653222 111 1356788999999999866554433
No 157
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.57 E-value=4e-07 Score=100.23 Aligned_cols=170 Identities=12% Similarity=0.057 Sum_probs=104.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccc------cCCceEEEEeCCccCHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVES------HFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~------~F~~~~wv~~s~~~~~~ 255 (1388)
.+.||++++++|...|...-.. +....+.|+|++|+|||++|+.|++...... .| ..+.+......+..
T Consensus 21 ~L~~Re~E~~~i~~~L~~~i~~----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~-~~v~INc~~~~t~~ 95 (318)
T 3te6_A 21 LLKSQVEDFTRIFLPIYDSLMS----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIF-DYIHIDALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCE-EEEEEETTCCC--H
T ss_pred ccCCHHHHHHHHHHHHHHHhcC----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCce-EEEEEeccccCCHH
Confidence 4889999999999887653211 4456789999999999999999998632111 12 34566666777888
Q ss_pred HHHHHHHHHhcCCCCCC-CcHHHHHHHHHhh--cCCceEEEEEeCCCCCChhhhhhhcccccC-CCCCc--EEEEEcCCh
Q 045318 256 KVTKAILRSICMHTDAD-DDLNSLQVKLKDG--LSRKKFLLVLDDMWNDNYGDWTSLRLPFVA-GASGS--KIIVTTRNQ 329 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~-~~~~~~~~~l~~~--l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~-~~~gs--~iivTtR~~ 329 (1388)
.++..|++++.+..... ...+.+...+.+. -.++++++|||+++.-. +.+.+...+.. ....+ .||.++...
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 99999999997653222 2233343333332 24678999999996543 22222222211 01222 334444332
Q ss_pred h-----H----HhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 330 S-----V----ASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 330 ~-----v----~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
+ + .+.+. ...+.+.+.+.+|-.+++.+++
T Consensus 174 d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 174 VTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHH
T ss_pred ccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHH
Confidence 1 1 12222 1468999999999999988875
No 158
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.57 E-value=3.9e-07 Score=103.98 Aligned_cols=103 Identities=18% Similarity=0.165 Sum_probs=72.4
Q ss_pred cCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcce-EEEecCCCCcccccc
Q 045318 940 ELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLH-YLELRSCPSLVKLPQ 1018 (1388)
Q Consensus 940 ~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~-~L~L~~~~~~~~~p~ 1018 (1388)
.+++|+++++.+|+++.++. ..|.++++|+.+++.+. ++.++... |.++++|+ .+++.+ .....-+.
T Consensus 224 ~~~~L~~l~L~~n~i~~I~~---~aF~~~~~L~~l~l~~n--i~~I~~~a------F~~~~~L~~~l~l~~-~l~~I~~~ 291 (329)
T 3sb4_A 224 YMPNLVSLDISKTNATTIPD---FTFAQKKYLLKIKLPHN--LKTIGQRV------FSNCGRLAGTLELPA-SVTAIEFG 291 (329)
T ss_dssp HCTTCCEEECTTBCCCEECT---TTTTTCTTCCEEECCTT--CCEECTTT------TTTCTTCCEEEEECT-TCCEECTT
T ss_pred hcCCCeEEECCCCCcceecH---hhhhCCCCCCEEECCcc--cceehHHH------hhCChhccEEEEEcc-cceEEchh
Confidence 47888899998888888865 45888888888888763 66666655 77788888 888877 34444467
Q ss_pred cccCCCccceEEEccCCCCccChhhhccCCCCCcccee
Q 045318 1019 TLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLN 1056 (1388)
Q Consensus 1019 ~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~ 1056 (1388)
+|.++++|+.++++++. ++.++...+ ..+++|+.++
T Consensus 292 aF~~c~~L~~l~l~~n~-i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 292 AFMGCDNLRYVLATGDK-ITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TTTTCTTEEEEEECSSC-CCEECTTTT-CTTCCCCEEE
T ss_pred hhhCCccCCEEEeCCCc-cCccchhhh-cCCcchhhhc
Confidence 78888888888887775 344443222 3355555553
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.54 E-value=7.2e-08 Score=97.62 Aligned_cols=82 Identities=28% Similarity=0.391 Sum_probs=71.8
Q ss_pred ceeeEEEeCCcccccc-ccccccCcccceeeccCccccccccc-hhcccccceeecCCCcchhhcch-hhcccCCCCeee
Q 045318 565 QCLRVLCLREYNICKI-SNTIGDLKHLRHLDLSETLIETLPES-VNTLYNLHTLLLESCSRLKKLCA-DMGNLIKLRHLN 641 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 641 (1388)
+.|++|+|++|.|+.+ |..|..+.+|++|+|++|.|+.+|.. +..+++|++|+|++|.. ..+|. .+..+++|++|+
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~ 108 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL-KSIPRGAFDNLKSLTHIW 108 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc-CEeCHHHhcCCCCCCEEE
Confidence 6789999999999988 46799999999999999999999765 58999999999999854 45554 589999999999
Q ss_pred cCCCCC
Q 045318 642 NYNVPL 647 (1388)
Q Consensus 642 l~~~~~ 647 (1388)
+++|.+
T Consensus 109 L~~N~~ 114 (170)
T 3g39_A 109 LLNNPW 114 (170)
T ss_dssp CCSSCB
T ss_pred eCCCCC
Confidence 999973
No 160
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.42 E-value=2.5e-06 Score=99.49 Aligned_cols=195 Identities=14% Similarity=0.154 Sum_probs=114.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|++..++.+...+.... ....+.|+|+.|+||||+|+.+++.......+. ......-.....
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~-------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-------~~~~~~~~~~~~ 81 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGR-------IHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT-------ATPCGVCDNCRE 81 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTC-------CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-------SSCCSSSHHHHH
T ss_pred hhccCcHHHHHHHHHHHHhCC-------CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-------CCCCcccHHHHH
Confidence 359999999999999987642 224678999999999999999987532111110 000000000011
Q ss_pred HHHH-------hcCC-CCCCCcHHHHHHHHHhh-cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-
Q 045318 261 ILRS-------ICMH-TDADDDLNSLQVKLKDG-LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS- 330 (1388)
Q Consensus 261 i~~~-------l~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~- 330 (1388)
+... +... .....+..++...+... ..+++.+||+||++.-+...+..+...+.....+..+|++|....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 1100 0000 01122333333322211 235678999999977655566666655554445677777776432
Q ss_pred HHh-hcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 331 VAS-MMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 331 v~~-~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
+.. .......+++.+++.++..+++...+-..+ .... .+....|++.++|.|..+..+.
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~-~~~~---~~a~~~l~~~~~G~~r~~~~~l 221 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEH-IAHE---PRALQLLARAAEGSLRDALSLT 221 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CCBC---HHHHHHHHHHSSSCHHHHHHHH
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHCCCCHHHHHHHH
Confidence 111 122236799999999999998887652111 1111 3557789999999998876654
No 161
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.38 E-value=3.2e-06 Score=96.03 Aligned_cols=182 Identities=13% Similarity=0.075 Sum_probs=112.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~ 259 (1388)
.+++|++..++.+.+++... ..+.+.++|++|+||||+|+.+++... ...+. ..+.+..+....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKt~la~~l~~~l~-~~~~~~~~~~~~~~~~~~------ 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERK--------NIPHLLFSGPPGTGKTATAIALARDLF-GENWRDNFIEMNASDERG------ 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTT--------CCCCEEEESSSSSSHHHHHHHHHHHHH-TTCHHHHCEEEETTSTTC------
T ss_pred HHHhCCHHHHHHHHHHHhCC--------CCCeEEEECcCCcCHHHHHHHHHHHhc-CCcccCCeEEEeCccccC------
Confidence 35899999999988887542 223388999999999999999987521 11111 122233332111
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhh--c-CCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-HHhh-
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDG--L-SRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-VASM- 334 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~--l-~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~- 334 (1388)
.....+....+... + .+++.++|+|+++.-.......+...+.....+.++|+||.... +...
T Consensus 82 ------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l 149 (319)
T 2chq_A 82 ------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPI 149 (319)
T ss_dssp ------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHH
T ss_pred ------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHH
Confidence 11111111112111 2 25688999999977655556667666655556778888886543 1111
Q ss_pred cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 335 MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
......+++.+++.++..+++...+...+ .... .+....+++.++|.+-.+....
T Consensus 150 ~sr~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~---~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 150 QSRCAVFRFKPVPKEAMKKRLLEICEKEG-VKIT---EDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HTTCEEEECCCCCHHHHHHHHHHHHHTTC-CCBC---HHHHHHHHHTTTTCHHHHHHHH
T ss_pred HhhCeEEEecCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHcCCCHHHHHHHH
Confidence 12235799999999999998887653222 1112 3567788899999987654443
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.34 E-value=2.8e-07 Score=106.27 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=29.0
Q ss_pred hccCceeeEEEeCC-ccccccc-cccccCcccceeeccCccccccc-cchhcccccceeecCCC
Q 045318 561 LLKLQCLRVLCLRE-YNICKIS-NTIGDLKHLRHLDLSETLIETLP-ESVNTLYNLHTLLLESC 621 (1388)
Q Consensus 561 ~~~l~~Lr~L~L~~-~~i~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~L~~~ 621 (1388)
+..+++|++|+|++ |.|+.+| ..|+.|.+|++|+|++|.|..+| ..|.+|++|++|+|++|
T Consensus 27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 44444455555543 4444444 34444555555555555544442 23444555555555544
No 163
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.28 E-value=2e-05 Score=91.62 Aligned_cols=101 Identities=15% Similarity=0.150 Sum_probs=51.3
Q ss_pred ccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChhhh
Q 045318 965 LQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEAL 1044 (1388)
Q Consensus 965 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~ 1044 (1388)
|.+. +|+.+.+.+. ++.+.... +.+ .+|+.+.+.+ .....-+..|.++++|+.+++.+|. ++.++...
T Consensus 132 F~~~-~L~~i~l~~~--i~~I~~~a------F~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~a 199 (401)
T 4fdw_A 132 FRNS-QIAKVVLNEG--LKSIGDMA------FFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPAST 199 (401)
T ss_dssp TTTC-CCSEEECCTT--CCEECTTT------TTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTT
T ss_pred cccC-CccEEEeCCC--ccEECHHh------cCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhh
Confidence 4443 5666666532 44444433 333 3577777764 2333334566777777777777664 44454444
Q ss_pred ccCCCCCccceeeccCCCccccccccC--CCCccEEEee
Q 045318 1045 MHNDNAPLESLNVVDCNSLTYIARVQL--PPSLKLLHIQ 1081 (1388)
Q Consensus 1045 ~~~~l~~L~~L~l~~c~~l~~~~~~~~--~~sL~~L~l~ 1081 (1388)
+. .++|+.+.+.+ .++.++...+ .++|+.+++.
T Consensus 200 F~--~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 200 FV--YAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp TT--TCCCSEEECCT--TCCEECTTTTTTCTTCCCEECC
T ss_pred Ee--ecccCEEEeCC--chheehhhHhhCCCCCCEEecC
Confidence 32 35566666642 2444443322 2344444443
No 164
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.22 E-value=1.4e-06 Score=90.69 Aligned_cols=45 Identities=22% Similarity=0.355 Sum_probs=38.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++||+++++++.+++... ..+.+.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------~~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 22 DPVIGRDEEIRRTIQVLQRR--------TKNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------SSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHhcC--------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998652 2245789999999999999999875
No 165
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.21 E-value=1.1e-06 Score=101.39 Aligned_cols=94 Identities=16% Similarity=0.094 Sum_probs=77.0
Q ss_pred EEEeCCc-cccccccccccCcccceeeccC-ccccccc-cchhcccccceeecCCCcchhhcchhhcccCCCCeeecCCC
Q 045318 569 VLCLREY-NICKISNTIGDLKHLRHLDLSE-TLIETLP-ESVNTLYNLHTLLLESCSRLKKLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 569 ~L~L~~~-~i~~lp~~i~~l~~Lr~L~L~~-~~i~~lp-~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 645 (1388)
.++++++ .++.+|. +..+.+|++|+|++ |.|..+| ..|++|.+|++|+|++|......|..|.+|++|++|++++|
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 4588888 8999999 99999999999996 9999986 57999999999999999655555667899999999999999
Q ss_pred CCcccCcCCCCCCCCCCCC
Q 045318 646 PLLEGMPLRIGHLSCLQTL 664 (1388)
Q Consensus 646 ~~~~~~p~~i~~L~~L~~L 664 (1388)
. +..+|..+.....|+.|
T Consensus 91 ~-l~~~~~~~~~~~~L~~l 108 (347)
T 2ifg_A 91 A-LESLSWKTVQGLSLQEL 108 (347)
T ss_dssp C-CSCCCSTTTCSCCCCEE
T ss_pred c-cceeCHHHcccCCceEE
Confidence 8 55677654333336665
No 166
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.19 E-value=2.4e-06 Score=92.62 Aligned_cols=172 Identities=15% Similarity=0.083 Sum_probs=97.5
Q ss_pred ccccc---hhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHH
Q 045318 182 EVHGR---DDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVT 258 (1388)
Q Consensus 182 ~~vGr---~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~ 258 (1388)
.++|. +..++.+..+.... ..+.+.|+|++|+||||+|+.+++... .....+.|+.++.-...
T Consensus 29 ~~~~~~~~~~~~~~l~~~~~~~--------~~~~~ll~G~~G~GKT~la~~l~~~~~--~~~~~~~~~~~~~~~~~---- 94 (242)
T 3bos_A 29 SYYPAAGNDELIGALKSAASGD--------GVQAIYLWGPVKSGRTHLIHAACARAN--ELERRSFYIPLGIHASI---- 94 (242)
T ss_dssp TSCC--CCHHHHHHHHHHHHTC--------SCSEEEEECSTTSSHHHHHHHHHHHHH--HTTCCEEEEEGGGGGGS----
T ss_pred hccCCCCCHHHHHHHHHHHhCC--------CCCeEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEEEHHHHHHH----
Confidence 46653 34455555555432 235788999999999999999998532 22234566655432110
Q ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhh--hhhhcccccCC-CCC-cEEEEEcCCh-----
Q 045318 259 KAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGD--WTSLRLPFVAG-ASG-SKIIVTTRNQ----- 329 (1388)
Q Consensus 259 ~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~--~~~l~~~~~~~-~~g-s~iivTtR~~----- 329 (1388)
+ .+ .+ +.+ .++.+||+||++...... .+.+...+... ..+ .+||+||+..
T Consensus 95 ------~----------~~---~~-~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~ 153 (242)
T 3bos_A 95 ------S----------TA---LL-EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAG 153 (242)
T ss_dssp ------C----------GG---GG-TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTT
T ss_pred ------H----------HH---HH-Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHH
Confidence 0 00 00 111 345689999996643222 23333222110 112 2577777632
Q ss_pred ----hHHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 330 ----SVASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 330 ----~v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
.+...+.....+++.+++.++..+++...+...+ .... .+....+++.++|.+-.+..+
T Consensus 154 ~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~-~~~~---~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 154 FVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRG-LQLP---EDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp CCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTT-CCCC---HHHHHHHHHHTTTCHHHHHHH
T ss_pred HhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcC-CCCC---HHHHHHHHHHccCCHHHHHHH
Confidence 2222222225799999999999999988763211 1112 356778899999988665443
No 167
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.16 E-value=1.4e-05 Score=92.20 Aligned_cols=194 Identities=15% Similarity=0.096 Sum_probs=112.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|+++.++.+..++.... ...+.|+|++|+||||+|+.+++.......+. ..+.+..+.......+ .
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~-~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN--------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIV-R 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT--------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHH-T
T ss_pred HHhhCCHHHHHHHHHHHhcCC--------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHH-H
Confidence 468999999999999886532 22388999999999999999998622111111 1233333332233222 2
Q ss_pred HHHHHhcCCC-CCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-HHhh-cC
Q 045318 260 AILRSICMHT-DADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-VASM-MG 336 (1388)
Q Consensus 260 ~i~~~l~~~~-~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~ 336 (1388)
+.+..+.... ...... .....-.+++-+|++|++..-.......+...+.......++|++|.... +... ..
T Consensus 108 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~s 182 (353)
T 1sxj_D 108 EKVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLAS 182 (353)
T ss_dssp THHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHH
T ss_pred HHHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhc
Confidence 2222221110 000000 00111124567999999976655555556555544445667777775432 1111 11
Q ss_pred CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 337 SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 337 ~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
....+.+.+++.++..+.+...+...+ ...+ .+..+.|++.++|.|-.+..+
T Consensus 183 R~~~i~~~~~~~~~~~~~l~~~~~~~~-~~i~---~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 183 QCSKFRFKALDASNAIDRLRFISEQEN-VKCD---DGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp HSEEEECCCCCHHHHHHHHHHHHHTTT-CCCC---HHHHHHHHHHTSSCHHHHHHH
T ss_pred cCceEEeCCCCHHHHHHHHHHHHHHhC-CCCC---HHHHHHHHHHcCCCHHHHHHH
Confidence 124789999999999998887653221 1122 356788999999998765443
No 168
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.10 E-value=7.5e-05 Score=87.28 Aligned_cols=59 Identities=15% Similarity=0.064 Sum_probs=36.5
Q ss_pred cccccCccceeEecCCCCCccccCcccccccCCCccceeecccCCCCCCcc--CCCCCCCcCcEeecC
Q 045318 1268 GLRRFTSLRELRLYGGSRDVVAFPPEDTKMALPASLTFLWIDNFPNLLRLS--SIENLTSLQFLRFRN 1333 (1388)
Q Consensus 1268 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~sL~~L~l~~~~~l~~l~--~~~~l~~L~~L~l~~ 1333 (1388)
.+.++.+|+.++|.. .++.++...+ ...++|+.+.+... ++.+. .+.++++|+.+++..
T Consensus 315 aF~~c~~L~~i~lp~---~v~~I~~~aF--~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 315 AFESCTSLVSIDLPY---LVEEIGKRSF--RGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp TTTTCTTCCEECCCT---TCCEECTTTT--TTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred hhcCCCCCCEEEeCC---cccEEhHHhc--cCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence 455667777777654 2445544432 34566777766543 56665 677788888887754
No 169
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.10 E-value=3.5e-05 Score=90.24 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=100.4
Q ss_pred CccccchhhH---HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc-cCHHH
Q 045318 181 AEVHGRDDDK---KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD-FDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~---~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~-~~~~~ 256 (1388)
.+++|.+..+ ..+...+.. +....+.|+|++|+||||+|+.+++. ....| +.++.. ....+
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~--------~~~~~vLL~GppGtGKTtlAr~ia~~--~~~~f-----~~l~a~~~~~~~ 90 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEA--------GHLHSMILWGPPGTGKTTLAEVIARY--ANADV-----ERISAVTSGVKE 90 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHH--------TCCCEEEEECSTTSSHHHHHHHHHHH--TTCEE-----EEEETTTCCHHH
T ss_pred HHhCCcHHHHhchHHHHHHHHc--------CCCcEEEEECCCCCcHHHHHHHHHHH--hCCCe-----EEEEeccCCHHH
Confidence 4688988877 667777655 33467889999999999999999985 22222 333222 22222
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh--HH-h
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS--VA-S 333 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~--v~-~ 333 (1388)
+ +.++... ......+++.+|++|+++.-.....+.+...+.. +.-.-|..||.+.. +. .
T Consensus 91 i-r~~~~~a----------------~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~-~~v~lI~att~n~~~~l~~a 152 (447)
T 3pvs_A 91 I-REAIERA----------------RQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED-GTITFIGATTENPSFELNSA 152 (447)
T ss_dssp H-HHHHHHH----------------HHHHHTTCCEEEEEETTTCC------CCHHHHHT-TSCEEEEEESSCGGGSSCHH
T ss_pred H-HHHHHHH----------------HHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc-CceEEEecCCCCcccccCHH
Confidence 1 2211111 0111246788999999977554455555544433 22223333555432 11 1
Q ss_pred hcCCCceEeCCCCChhhHHHHHHHcccCCCCC---CCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 334 MMGSVSAYELKKLTDDDCRLVFTQHSLGTKDF---SNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 334 ~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~---~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
......++.+.+++.++..+++.+.+-..... ....--.+..+.+++.++|.+-.+..
T Consensus 153 L~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln 213 (447)
T 3pvs_A 153 LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALN 213 (447)
T ss_dssp HHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHH
T ss_pred HhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHH
Confidence 12233578999999999999988765321100 11111245678888999998755443
No 170
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.09 E-value=1.8e-06 Score=99.48 Aligned_cols=82 Identities=13% Similarity=0.131 Sum_probs=39.3
Q ss_pred ceeeEEEeCCcccccc--ccccccCcccceeeccCccccccc-cch-----hcccccceeecCCCcchh----hcchhhc
Q 045318 565 QCLRVLCLREYNICKI--SNTIGDLKHLRHLDLSETLIETLP-ESV-----NTLYNLHTLLLESCSRLK----KLCADMG 632 (1388)
Q Consensus 565 ~~Lr~L~L~~~~i~~l--p~~i~~l~~Lr~L~L~~~~i~~lp-~~i-----~~L~~L~~L~L~~~~~~~----~lp~~i~ 632 (1388)
+.|++|+|++|.++.. ..-...+.+|++|+|++|.+.... ..+ ...++|++|+|++|.... .++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666655421 112233445666666666554321 111 123456666666654321 2333445
Q ss_pred ccCCCCeeecCCCC
Q 045318 633 NLIKLRHLNNYNVP 646 (1388)
Q Consensus 633 ~L~~L~~L~l~~~~ 646 (1388)
.+++|++|++++|.
T Consensus 181 ~~~~L~~L~Ls~N~ 194 (372)
T 3un9_A 181 GNTSVTHLSLLHTG 194 (372)
T ss_dssp TCSSCCEEECTTSS
T ss_pred cCCCcCEEeCCCCC
Confidence 55556666666554
No 171
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.09 E-value=5.5e-05 Score=88.45 Aligned_cols=84 Identities=8% Similarity=0.066 Sum_probs=46.3
Q ss_pred hccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccc
Q 045318 938 NQELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLP 1017 (1388)
Q Consensus 938 ~~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p 1017 (1388)
+..+.+|+.+.+.++ ++.+.. ..|.++++|+.+++.+ .++.+.... +.++++|+.+++..+ ....-.
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~---~aF~~c~~L~~i~lp~--~v~~I~~~a------F~~c~~L~~i~lp~~-l~~I~~ 359 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGE---EAFESCTSLVSIDLPY--LVEEIGKRS------FRGCTSLSNINFPLS-LRKIGA 359 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECT---TTTTTCTTCCEECCCT--TCCEECTTT------TTTCTTCCEECCCTT-CCEECT
T ss_pred ccccccccccccccc-cceech---hhhcCCCCCCEEEeCC--cccEEhHHh------ccCCCCCCEEEECcc-ccEehH
Confidence 345556666666443 444432 3466666777766643 244444333 555666777766544 333334
Q ss_pred ccccCCCccceEEEccC
Q 045318 1018 QTLLSLSSLRQLKISEC 1034 (1388)
Q Consensus 1018 ~~~~~l~~L~~L~l~~~ 1034 (1388)
.+|.++++|+.+++..+
T Consensus 360 ~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 360 NAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTBTTCTTCCEEEEEGG
T ss_pred HHhhCCCCCCEEEECCC
Confidence 45666777777766543
No 172
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.06 E-value=2.2e-05 Score=92.37 Aligned_cols=159 Identities=18% Similarity=0.114 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCC--ceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD--LKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~--~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
...+.|+|++|+||||||+.+++. ....|. ..++++. ..+..++...+... ... .+.+.++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~--l~~~~~~~~v~~v~~------~~~~~~~~~~~~~~-----~~~----~~~~~~~ 192 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNY--VVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYR 192 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHH--HHHHCCSSCEEEEEH------HHHHHHHHHHHHTT-----CHH----HHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH--HHHhCCCCeEEEeeH------HHHHHHHHHHHHcc-----cHH----HHHHHhc
Confidence 457889999999999999999985 322221 2344432 33444454444321 111 2333334
Q ss_pred CceEEEEEeCCCCCCh--hhhhhhcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHH
Q 045318 288 RKKFLLVLDDMWNDNY--GDWTSLRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVF 355 (1388)
Q Consensus 288 ~k~~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf 355 (1388)
.+.-+|++||++.... ...+.+...+.. ...|..||+||... .+...+....++.+++++.++..+++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 3667999999965432 222333333221 13567888888752 23333444457899999999999999
Q ss_pred HHcccCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 045318 356 TQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAA 389 (1388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai 389 (1388)
.+.+...+ ...++ ++...|++.++|.+-.+
T Consensus 273 ~~~~~~~~-~~i~~---e~l~~la~~~~gn~R~l 302 (440)
T 2z4s_A 273 RKMLEIEH-GELPE---EVLNFVAENVDDNLRRL 302 (440)
T ss_dssp HHHHHHHT-CCCCT---THHHHHHHHCCSCHHHH
T ss_pred HHHHHHcC-CCCCH---HHHHHHHHhcCCCHHHH
Confidence 88763211 11222 34677889999987544
No 173
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.00 E-value=2.4e-05 Score=90.18 Aligned_cols=197 Identities=12% Similarity=0.101 Sum_probs=104.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCc---cccc-cCCc--------------
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDH---MVES-HFDL-------------- 242 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~---~~~~-~F~~-------------- 242 (1388)
.+++|.+..++.+.+++... +....+.|+|+.|+||||+|+.++... .... .++.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~-------~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~ 86 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQP-------RDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELN 86 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCT-------TCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------C
T ss_pred HHhcCCHHHHHHHHHHHhhC-------CCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceee
Confidence 45889998888888776221 222238999999999999999987731 0000 0010
Q ss_pred ------eEEEEeCCcc-CHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccC
Q 045318 243 ------KAWTCVSDDF-DAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVA 315 (1388)
Q Consensus 243 ------~~wv~~s~~~-~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~ 315 (1388)
.+.+..+... ......+++++.+..... ..... .+.. +.+++-++|+|++..-+......+...+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~-~ls~-l~~~~~vlilDE~~~L~~~~~~~L~~~le~ 160 (354)
T 1sxj_E 87 VVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQ----VDFQD-SKDG-LAHRYKCVIINEANSLTKDAQAALRRTMEK 160 (354)
T ss_dssp CEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------------CCEEEEEECTTSSCHHHHHHHHHHHHH
T ss_pred eecccceEEecHhhcCCcchHHHHHHHHHHHHhcc----ccccc-cccc-cCCCCeEEEEeCccccCHHHHHHHHHHHHh
Confidence 0111111000 000012222222211100 00000 0000 233667999999977655555566555544
Q ss_pred CCCCcEEEEEcCChh-HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 045318 316 GASGSKIIVTTRNQS-VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTLG 393 (1388)
Q Consensus 316 ~~~gs~iivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~~ 393 (1388)
...+..+|++|.... +... ......+++.+++.++..+.+...+...+ ...+. .+....|++.++|.+-.+..+.
T Consensus 161 ~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~--~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 161 YSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNER-IQLET--KDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp STTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT-CEECC--SHHHHHHHHHHTTCHHHHHHHH
T ss_pred hcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcC-CCCCc--HHHHHHHHHHcCCCHHHHHHHH
Confidence 345677887776532 2111 12226799999999999998887653211 11110 1456888999999886554443
No 174
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.99 E-value=2.9e-05 Score=93.72 Aligned_cols=199 Identities=14% Similarity=0.157 Sum_probs=107.3
Q ss_pred CccccchhhHHHHHHHHhcCC---------CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCc
Q 045318 181 AEVHGRDDDKKAIVELLLNDD---------LNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDD 251 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~---------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~ 251 (1388)
.+++|++..++++.+++.... .+....+..+.+.|+|++|+||||+|+.+++.. .+ ..+.+..+..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l----~~-~~i~in~s~~ 113 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL----GY-DILEQNASDV 113 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----TC-EEEEECTTSC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----CC-CEEEEeCCCc
Confidence 469999999999999986410 000000134688999999999999999999863 12 2233444444
Q ss_pred cCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChh---hhhhhcccccCCCCCcEEEEEcCC
Q 045318 252 FDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYG---DWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 252 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~---~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
.... +....+........-..-...... .....+++.+||+|+++.-... .+..+...+.. .+..||+++..
T Consensus 114 ~~~~-~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~ 188 (516)
T 1sxj_A 114 RSKT-LLNAGVKNALDNMSVVGYFKHNEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNE 188 (516)
T ss_dssp CCHH-HHHHTGGGGTTBCCSTTTTTC------CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESC
T ss_pred chHH-HHHHHHHHHhccccHHHHHhhhhh--hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcC
Confidence 3332 222222222111100000000000 0012367889999999654321 12333332222 23345555544
Q ss_pred hh---HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHH
Q 045318 329 QS---VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAAKTLG 393 (1388)
Q Consensus 329 ~~---v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~ 393 (1388)
.. +.........+.+.+++.++..+.+...+...+. ...+ +....|++.++| ++-|+..+.
T Consensus 189 ~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~-~i~~---~~l~~la~~s~GdiR~~i~~L~ 253 (516)
T 1sxj_A 189 RNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKF-KLDP---NVIDRLIQTTRGDIRQVINLLS 253 (516)
T ss_dssp TTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CCCT---THHHHHHHHTTTCHHHHHHHHT
T ss_pred CCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCC-CCCH---HHHHHHHHHcCCcHHHHHHHHH
Confidence 22 2222222357899999999999888776532221 1122 346788899999 455555543
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.98 E-value=6.8e-05 Score=83.26 Aligned_cols=186 Identities=16% Similarity=0.104 Sum_probs=98.2
Q ss_pred CCccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
-..++|.+..++++.+.+....... ......+-+.|+|++|+|||++|+++++.. ...| +.+..+.-..
T Consensus 16 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~--~~~~---~~v~~~~~~~- 89 (285)
T 3h4m_A 16 YEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET--NATF---IRVVGSELVK- 89 (285)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT--TCEE---EEEEGGGGCC-
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE---EEEehHHHHH-
Confidence 3568999999999988774310000 000123458899999999999999999752 2222 2222211110
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC-----------Chhhhhhh---ccccc--CCCC
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND-----------NYGDWTSL---RLPFV--AGAS 318 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~l---~~~~~--~~~~ 318 (1388)
.. .......+...+......+..+|++||++.- .......+ ...+. ....
T Consensus 90 -------------~~-~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~ 155 (285)
T 3h4m_A 90 -------------KF-IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARG 155 (285)
T ss_dssp -------------CS-TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSS
T ss_pred -------------hc-cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCC
Confidence 00 0001111222222223356689999999431 10111112 11111 1234
Q ss_pred CcEEEEEcCChhHHh-h-c---CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHHH
Q 045318 319 GSKIIVTTRNQSVAS-M-M---GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAAK 390 (1388)
Q Consensus 319 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~ 390 (1388)
+..||.||....... . . .....+.+...+.++..+++...+.... ...... ...+++.+.| .|-.+.
T Consensus 156 ~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~-~~~~~~----~~~l~~~~~g~~~~~i~ 228 (285)
T 3h4m_A 156 DVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMN-LAEDVN----LEEIAKMTEGCVGAELK 228 (285)
T ss_dssp SEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSC-BCTTCC----HHHHHHHCTTCCHHHHH
T ss_pred CEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCC-CCCcCC----HHHHHHHcCCCCHHHHH
Confidence 677888887543221 1 1 1224689999999999999988763222 111222 3556677776 443443
No 176
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.95 E-value=2.9e-05 Score=88.77 Aligned_cols=176 Identities=18% Similarity=0.140 Sum_probs=103.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|++..++++..++....... .....|.|+|++|+|||++|+++++. ....| +.+......
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~~---~~~~~vll~G~~GtGKT~la~~ia~~--~~~~~---~~~~~~~~~-------- 92 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKRN---ECLDHILFSGPAGLGKTTLANIISYE--MSANI---KTTAAPMIE-------- 92 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHTT---SCCCCEEEECSTTSSHHHHHHHHHHH--TTCCE---EEEEGGGCC--------
T ss_pred HHhCChHHHHHHHHHHHHHHHhcC---CCCCeEEEECcCCCCHHHHHHHHHHH--hCCCe---EEecchhcc--------
Confidence 469999999999988886421100 23346789999999999999999875 22222 222222111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCC------------------CCcEE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA------------------SGSKI 322 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~------------------~gs~i 322 (1388)
........+.. ..+..+|++|++..........+...+.... ++..+
T Consensus 93 -------------~~~~~~~~~~~--~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (338)
T 3pfi_A 93 -------------KSGDLAAILTN--LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTL 157 (338)
T ss_dssp -------------SHHHHHHHHHT--CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEE
T ss_pred -------------chhHHHHHHHh--ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEE
Confidence 11122222222 2355789999997655444444443332211 12466
Q ss_pred EEEcCChhH-Hhh-c-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 045318 323 IVTTRNQSV-ASM-M-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKT 391 (1388)
Q Consensus 323 ivTtR~~~v-~~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~ 391 (1388)
|.||..... ... . .....+.+.+++.++..+++...+-... .. --.+..+.+++.+.|.|-.+..
T Consensus 158 i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~-~~---~~~~~~~~l~~~~~G~~r~l~~ 225 (338)
T 3pfi_A 158 IGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLN-KT---CEEKAALEIAKRSRSTPRIALR 225 (338)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CE---ECHHHHHHHHHTTTTCHHHHHH
T ss_pred EEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcC-CC---CCHHHHHHHHHHHCcCHHHHHH
Confidence 666654321 111 1 1235799999999999999887763211 11 1235678888999999854443
No 177
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.92 E-value=0.00014 Score=82.35 Aligned_cols=171 Identities=12% Similarity=0.045 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc--------------------ccCCceEEE
Q 045318 187 DDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE--------------------SHFDLKAWT 246 (1388)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~--------------------~~F~~~~wv 246 (1388)
++..+.+...+..+ .-...+.++|+.|+||||+|+.+.+...-. .|++ ..++
T Consensus 8 ~~~~~~l~~~i~~~-------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d-~~~~ 79 (334)
T 1a5t_A 8 RPDFEKLVASYQAG-------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD-YYTL 79 (334)
T ss_dssp HHHHHHHHHHHHTT-------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT-EEEE
T ss_pred HHHHHHHHHHHHcC-------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC-EEEE
Confidence 45566777776553 223568899999999999999998742111 1122 1222
Q ss_pred EeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh----cCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEE
Q 045318 247 CVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDG----LSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKI 322 (1388)
Q Consensus 247 ~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~i 322 (1388)
.... .......+++...+... ..+++-++|+|+++.-.......+...+.....++.+
T Consensus 80 ~~~~------------------~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~ 141 (334)
T 1a5t_A 80 APEK------------------GKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWF 141 (334)
T ss_dssp CCCT------------------TCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEE
T ss_pred eccc------------------cCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEE
Confidence 2110 00111222222221111 1356778999999776655566666666554556777
Q ss_pred EEEcCChh-HHhh-cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 323 IVTTRNQS-VASM-MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 323 ivTtR~~~-v~~~-~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
|++|...+ +... ......+++.++++++..+.+.... . .. .+.+..+++.++|.|..+..+
T Consensus 142 Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~----~--~~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 142 FLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV----T--MS---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp EEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC----C--CC---HHHHHHHHHHTTTCHHHHHHT
T ss_pred EEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc----C--CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 77776543 2222 2233579999999999999888764 1 11 245678999999999766444
No 178
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.89 E-value=6.6e-05 Score=87.01 Aligned_cols=193 Identities=11% Similarity=0.091 Sum_probs=104.0
Q ss_pred CccccchhhHHH---HHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe----CCccC
Q 045318 181 AEVHGRDDDKKA---IVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV----SDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~---l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~----s~~~~ 253 (1388)
..++|++..++. +.+.+.... ...+.+.|+|++|+|||++|+.+++.......| +.+.. +....
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~------~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~---~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK------IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF---TAIAGSEIFSLEMS 114 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC------CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE---EEEEGGGGSCSSSC
T ss_pred hhccChHHHHHHHHHHHHHHHcCC------CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc---ccccchhhhhcccc
Confidence 469999988776 444544432 123578899999999999999999863211111 11221 22334
Q ss_pred HHHHHHHHHHHhcCCC-----------------------------C-CCCcHHHHHHHHHhhc-----CCc----eEEEE
Q 045318 254 AIKVTKAILRSICMHT-----------------------------D-ADDDLNSLQVKLKDGL-----SRK----KFLLV 294 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~-----------------------------~-~~~~~~~~~~~l~~~l-----~~k----~~LlV 294 (1388)
..+.+.+......... . ......++...+.+.. .++ +.+|+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 4444444433321100 0 0000122222222211 233 35999
Q ss_pred EeCCCCCChhhhhhhcccccCCCCCcEEEEEcC-C----------------hhHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 295 LDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTR-N----------------QSVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 295 lDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR-~----------------~~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
+|++..-.......+...+...... .++++|. . +.+.+.+ ..+.+.+++.++..+++..
T Consensus 195 IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~~il~~ 270 (368)
T 3uk6_A 195 IDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTKQILRI 270 (368)
T ss_dssp EESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHHHHHHH
T ss_pred EhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHHHHHHH
Confidence 9999766555555555544433333 3444442 1 2222222 4589999999999999987
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcC-CChHHHH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCN-GLPLAAK 390 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~-g~Plai~ 390 (1388)
.+-... .... .+....|++.+. |.|-.+.
T Consensus 271 ~~~~~~-~~~~---~~~l~~l~~~~~~G~~r~~~ 300 (368)
T 3uk6_A 271 RCEEED-VEMS---EDAYTVLTRIGLETSLRYAI 300 (368)
T ss_dssp HHHHTT-CCBC---HHHHHHHHHHHHHSCHHHHH
T ss_pred HHHHcC-CCCC---HHHHHHHHHHhcCCCHHHHH
Confidence 763221 1111 356778888887 7664443
No 179
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.86 E-value=0.00011 Score=83.43 Aligned_cols=173 Identities=18% Similarity=0.108 Sum_probs=100.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.+++|.+..++.+.+++... ....++.+.|++|+|||++|+.+++.. .. ..+.+..+. ..... ++.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~-------~~~~~~L~~G~~G~GKT~la~~la~~l--~~---~~~~i~~~~-~~~~~-i~~ 91 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKG-------KIPHIILHSPSPGTGKTTVAKALCHDV--NA---DMMFVNGSD-CKIDF-VRG 91 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTT-------CCCSEEEECSSTTSSHHHHHHHHHHHT--TE---EEEEEETTT-CCHHH-HHT
T ss_pred HHHhCcHHHHHHHHHHHHcC-------CCCeEEEeeCcCCCCHHHHHHHHHHHh--CC---CEEEEcccc-cCHHH-HHH
Confidence 56899999999999998753 223577888999999999999998752 21 223344332 22222 222
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC-hhhhhhhcccccCCCCCcEEEEEcCChh-----HHhh
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN-YGDWTSLRLPFVAGASGSKIIVTTRNQS-----VASM 334 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~l~~~~~~~~~gs~iivTtR~~~-----v~~~ 334 (1388)
.+...... ....+++.+||+||++.-. ......+...+.....+.++|+||.... +.+.
T Consensus 92 ~~~~~~~~---------------~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR 156 (324)
T 3u61_B 92 PLTNFASA---------------ASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSR 156 (324)
T ss_dssp HHHHHHHB---------------CCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHH
T ss_pred HHHHHHhh---------------cccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhh
Confidence 22211100 0113477899999997654 4444555544433334678888887643 2222
Q ss_pred cCCCceEeCCCCChhhHHHH-------HHHcccCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 045318 335 MGSVSAYELKKLTDDDCRLV-------FTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLA 388 (1388)
Q Consensus 335 ~~~~~~~~l~~L~~~~~~~l-------f~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pla 388 (1388)
+ .+++++++++++-.++ +...+.. ......+ .+....+++.++|.+-.
T Consensus 157 ~---~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~--~~~~~~l~~~~~gd~R~ 211 (324)
T 3u61_B 157 C---RVITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIAD--MKVVAALVKKNFPDFRK 211 (324)
T ss_dssp S---EEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSC--HHHHHHHHHHTCSCTTH
T ss_pred C---cEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCc--HHHHHHHHHhCCCCHHH
Confidence 2 4799999998874333 2222211 1111111 25667888889886643
No 180
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.86 E-value=0.00016 Score=79.42 Aligned_cols=195 Identities=15% Similarity=0.159 Sum_probs=101.1
Q ss_pred ccccchhhHHHHHH-------HHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 182 EVHGRDDDKKAIVE-------LLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~-------~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
.++|....+++++. .+..... .....|.|+|++|+|||++|+++++. ....| +.+..+..
T Consensus 34 ~~i~~~~~~~~i~~~~~~l~~~l~~~~~-----~~~~~vLl~G~~GtGKT~la~~ia~~--~~~~~---~~i~~~~~--- 100 (272)
T 1d2n_A 34 GIIKWGDPVTRVLDDGELLVQQTKNSDR-----TPLVSVLLEGPPHSGKTALAAKIAEE--SNFPF---IKICSPDK--- 100 (272)
T ss_dssp CCCCCSHHHHHHHHHHHHHHHHHHHCSS-----CSEEEEEEECSTTSSHHHHHHHHHHH--HTCSE---EEEECGGG---
T ss_pred CCCCccHHHHHHHHHHHHHHHHHhccCC-----CCCeEEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEeCHHH---
Confidence 46777766666655 3322111 44578899999999999999999985 22222 22222211
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC---------Chhh-hhhhccccc---CCCCCcE
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND---------NYGD-WTSLRLPFV---AGASGSK 321 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~-~~~l~~~~~---~~~~gs~ 321 (1388)
+.+. ........+...+......+..+|++||++.- .... ...+...+. ..+....
T Consensus 101 ----------~~g~-~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 169 (272)
T 1d2n_A 101 ----------MIGF-SETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLL 169 (272)
T ss_dssp ----------CTTC-CHHHHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEE
T ss_pred ----------hcCC-chHHHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEE
Confidence 0000 00000112222333333467889999998431 0111 122222221 1233455
Q ss_pred EEEEcCChhHHhh---cCC-CceEeCCCCCh-hhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC------ChHHHH
Q 045318 322 IIVTTRNQSVASM---MGS-VSAYELKKLTD-DDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG------LPLAAK 390 (1388)
Q Consensus 322 iivTtR~~~v~~~---~~~-~~~~~l~~L~~-~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g------~Plai~ 390 (1388)
||.||........ ... ...+.+.++++ ++..+++.... .. . .+....|++.+.| ++-++.
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~----~~--~---~~~~~~l~~~~~g~~~~g~ir~l~~ 240 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG----NF--K---DKERTTIAQQVKGKKVWIGIKKLLM 240 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT----CS--C---HHHHHHHHHHHTTSEEEECHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC----CC--C---HHHHHHHHHHhcCCCccccHHHHHH
Confidence 7778877654432 111 35689999998 66666655431 11 1 2456778888887 444444
Q ss_pred HHHHhhcCCCCHHHHHHHHh
Q 045318 391 TLGGLLRGKSNPFDWRNVLN 410 (1388)
Q Consensus 391 ~~~~~l~~~~~~~~w~~~~~ 410 (1388)
.+-.+-. ......|..+++
T Consensus 241 ~l~~a~~-~~~~~~~~~~~~ 259 (272)
T 1d2n_A 241 LIEMSLQ-MDPEYRVRKFLA 259 (272)
T ss_dssp HHHHHTT-SCGGGHHHHHHH
T ss_pred HHHHHhh-hchHHHHHHHHH
Confidence 4443332 223345555554
No 181
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.85 E-value=7.7e-05 Score=84.00 Aligned_cols=160 Identities=14% Similarity=0.054 Sum_probs=88.6
Q ss_pred ccccchhhHHHHHHHHhcCCC-------CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 182 EVHGRDDDKKAIVELLLNDDL-------NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~-------~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
.++|.+..++.+.+++..... +.........|.|+|++|+|||++|+.+++...........-++.+...
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~--- 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRD--- 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGG---
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHH---
Confidence 478998888888766542100 0000033456889999999999999988875322222111223333311
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC---------ChhhhhhhcccccCCCCCcEEEEE
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND---------NYGDWTSLRLPFVAGASGSKIIVT 325 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------~~~~~~~l~~~~~~~~~gs~iivT 325 (1388)
.+.... ...........+... +..+|++|+++.- .......+...+.....+..||.|
T Consensus 109 ---------~l~~~~-~g~~~~~~~~~~~~~---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ 175 (309)
T 3syl_A 109 ---------DLVGQY-IGHTAPKTKEVLKRA---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILA 175 (309)
T ss_dssp ---------GTCCSS-TTCHHHHHHHHHHHH---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEE
T ss_pred ---------Hhhhhc-ccccHHHHHHHHHhc---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEe
Confidence 111000 011111222222222 3359999999632 333345555555445556788888
Q ss_pred cCChh----------HHhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 326 TRNQS----------VASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 326 tR~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
|.... +...+ ...+.+++++.++-.+++...+
T Consensus 176 ~~~~~~~~~~~~~~~l~~R~--~~~i~~~~~~~~~~~~il~~~l 217 (309)
T 3syl_A 176 GYADRMENFFQSNPGFRSRI--AHHIEFPDYSDEELFEIAGHML 217 (309)
T ss_dssp ECHHHHHHHHHHSTTHHHHE--EEEEEECCCCHHHHHHHHHHHH
T ss_pred CChHHHHHHHhhCHHHHHhC--CeEEEcCCcCHHHHHHHHHHHH
Confidence 86432 22222 2578999999999999987765
No 182
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.83 E-value=0.00016 Score=79.08 Aligned_cols=189 Identities=13% Similarity=0.092 Sum_probs=97.2
Q ss_pred CccccchhhHHHHHHHHh---cCCCC-CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLL---NDDLN-ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~---~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++++.+++. ....- .......+.|.|+|++|+|||++|+++++. .... .+.+..+.-.+.
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~--~~~~---~~~~~~~~~~~~-- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATE--AQVP---FLAMAGAEFVEV-- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHH--HTCC---EEEEETTTTSSS--
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHH--hCCC---EEEechHHHHhh--
Confidence 468899988877766542 21110 000022345789999999999999999985 2222 233333321110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC------------h---hhhhhhcccccC--CCCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN------------Y---GDWTSLRLPFVA--GASG 319 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~------------~---~~~~~l~~~~~~--~~~g 319 (1388)
........+...+.........+|++||++.-. . .....+...+.. ...+
T Consensus 79 -------------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~ 145 (262)
T 2qz4_A 79 -------------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDH 145 (262)
T ss_dssp -------------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCC
T ss_pred -------------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCC
Confidence 000011112222233333457899999996531 0 111222222211 1235
Q ss_pred cEEEEEcCChhHHh-hc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 045318 320 SKIIVTTRNQSVAS-MM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTL 392 (1388)
Q Consensus 320 s~iivTtR~~~v~~-~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 392 (1388)
..||.||....... .. .....+.+...+.++..+++...+.... .. .........+++.+.|.+- .+..+
T Consensus 146 ~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~--~~~~~~~~~l~~~~~g~~~~~l~~l 221 (262)
T 2qz4_A 146 VIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLK-LT--QSSTFYSQRLAELTPGFSGADIANI 221 (262)
T ss_dssp EEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTT-CC--BTHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred EEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCC-CC--cchhhHHHHHHHHCCCCCHHHHHHH
Confidence 67777776544221 11 1225688999999999999887653221 11 1112234678888888653 44333
No 183
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.81 E-value=9.9e-06 Score=93.19 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=41.4
Q ss_pred CceeeEEEeCCccccc-----cccccccCcccceeeccCccccc-----cccchhcccccceeecCCCcchh----hcch
Q 045318 564 LQCLRVLCLREYNICK-----ISNTIGDLKHLRHLDLSETLIET-----LPESVNTLYNLHTLLLESCSRLK----KLCA 629 (1388)
Q Consensus 564 l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~~----~lp~ 629 (1388)
...|++|+|++|.|+. ++..+...++|++|+|++|.|.. ++..+...++|++|+|++|.... .++.
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 3455555555555542 33334455555555555555442 23444455555555555554321 2233
Q ss_pred hhcccCCCCeeecCCCC
Q 045318 630 DMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 630 ~i~~L~~L~~L~l~~~~ 646 (1388)
.+...++|++|++++|.
T Consensus 234 ~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 234 AAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHCSSCCEEECTTSS
T ss_pred HHHhCCCCCEEeccCCC
Confidence 34445555555555555
No 184
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.76 E-value=5e-05 Score=74.08 Aligned_cols=113 Identities=16% Similarity=0.010 Sum_probs=67.6
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccc-cccCCceEEEEeCCccCHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMV-ESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~-~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++|+...++++.+.+..-.. .. .-|.|+|..|+|||++|+.+++.... ...| + +..+...+.
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~-----~~-~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~---v-~~~~~~~~~------ 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE-----TD-IAVWLYGAPGTGRMTGARYLHQFGRNAQGEF---V-YRELTPDNA------ 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT-----CC-SCEEEESSTTSSHHHHHHHHHHSSTTTTSCC---E-EEECCTTTS------
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CC-CCEEEECCCCCCHHHHHHHHHHhCCccCCCE---E-EECCCCCcc------
Confidence 578999999999888754221 11 23679999999999999999985211 2222 2 554433221
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
..... .+... +.-.|++|+++.-.......+...+.......+||.||..
T Consensus 66 ------------~~~~~---~~~~a---~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 66 ------------PQLND---FIALA---QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp ------------SCHHH---HHHHH---TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred ------------hhhhc---HHHHc---CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 11111 11111 2246899999776655556665555444455678877764
No 185
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.72 E-value=0.00048 Score=77.90 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=86.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
...+.|+|++|+||||||+.+++..... . ...++++. .++...+...+... ..... .+.+. +
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~-~-~~~~~i~~------~~~~~~~~~~~~~~-----~~~~~----~~~~~-~ 98 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR-G-YRVIYSSA------DDFAQAMVEHLKKG-----TINEF----RNMYK-S 98 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHT-T-CCEEEEEH------HHHHHHHHHHHHHT-----CHHHH----HHHHH-T
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHC-C-CEEEEEEH------HHHHHHHHHHHHcC-----cHHHH----HHHhc-C
Confidence 3568899999999999999999853211 1 12344432 33344444433211 11222 12222 3
Q ss_pred eEEEEEeCCCCCCh--hhhhhhcccccC-CCCCcEEEEEcCCh---------hHHhhcCCCceEeCCCCChhhHHHHHHH
Q 045318 290 KFLLVLDDMWNDNY--GDWTSLRLPFVA-GASGSKIIVTTRNQ---------SVASMMGSVSAYELKKLTDDDCRLVFTQ 357 (1388)
Q Consensus 290 ~~LlVlDdv~~~~~--~~~~~l~~~~~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~l~~L~~~~~~~lf~~ 357 (1388)
..+|++||+..... ...+.+...+.. ...|..||+||... .+...+....++++++ +.++..+++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56999999965332 122333332211 12456788877532 2223333335789999 99999999888
Q ss_pred cccCCCCCCCCchHHHHHHHHHHHcCCChH
Q 045318 358 HSLGTKDFSNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
.+...+ ...+ .+....|++++ |..-
T Consensus 178 ~~~~~~-~~l~---~~~l~~l~~~~-g~~r 202 (324)
T 1l8q_A 178 KLKEFN-LELR---KEVIDYLLENT-KNVR 202 (324)
T ss_dssp HHHHTT-CCCC---HHHHHHHHHHC-SSHH
T ss_pred HHHhcC-CCCC---HHHHHHHHHhC-CCHH
Confidence 763222 1122 35567788888 7653
No 186
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.71 E-value=2.4e-05 Score=80.61 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=37.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++||+.+++++.+.+... ..+.|.|+|++|+||||+|+.+++.
T Consensus 22 ~~~~g~~~~~~~l~~~l~~~--------~~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 22 DPVIGRDTEIRRAIQILSRR--------TKNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp CCCCSCHHHHHHHHHHHTSS--------SSCEEEEESCGGGCHHHHHHHHHHH
T ss_pred chhhcchHHHHHHHHHHhCC--------CCCceEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999998652 2245689999999999999999875
No 187
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.70 E-value=5.1e-05 Score=77.46 Aligned_cols=102 Identities=20% Similarity=0.202 Sum_probs=56.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRK 289 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k 289 (1388)
...+.|+|+.|+||||||+.+++.......+ .++++ +..++...+.......... .....+. +
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~-~~~~~------~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~ 100 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGI-RGYFF------DTKDLIFRLKHLMDEGKDT-----KFLKTVL-----N 100 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCC-CCCEE------EHHHHHHHHHHHHHHTCCS-----HHHHHHH-----T
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCC-eEEEE------EHHHHHHHHHHHhcCchHH-----HHHHHhc-----C
Confidence 3688999999999999999999863212222 22333 3445555554444322111 2222222 3
Q ss_pred eEEEEEeCCCCCChhhhh--hhcccccCC-CCCcEEEEEcCC
Q 045318 290 KFLLVLDDMWNDNYGDWT--SLRLPFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 290 ~~LlVlDdv~~~~~~~~~--~l~~~~~~~-~~gs~iivTtR~ 328 (1388)
.-+|||||++....+.|. .+...+... ..|..||+||..
T Consensus 101 ~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 101 SPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp CSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 458999999743333443 222222211 256788888864
No 188
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.67 E-value=0.00025 Score=80.71 Aligned_cols=182 Identities=13% Similarity=0.139 Sum_probs=102.9
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCC-ceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFD-LKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~-~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|.+..++.+..++..+ +...+.++|+.|+||||+|+.++.... ...+. ....+..+.......+ +
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g--------~~~~~ll~Gp~G~GKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~~i-r 94 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEG--------KLPHLLFYGPPGTGKTSTIVALAREIY-GKNYSNMVLELNASDDRGIDVV-R 94 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTT--------CCCCEEEECSSSSSHHHHHHHHHHHHH-TTSHHHHEEEECTTSCCSHHHH-H
T ss_pred HHhcCcHHHHHHHHHHHhcC--------CCceEEEECCCCCCHHHHHHHHHHHHc-CCCccceEEEEcCcccccHHHH-H
Confidence 35789888888888887653 222388999999999999999987521 11111 1112222222222111 1
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh-HHhh-cCC
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS-VASM-MGS 337 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~-v~~~-~~~ 337 (1388)
+++..+... ...+.+.+-++|+|+++.-.......+...+.......++|++|.... +... ...
T Consensus 95 ~~i~~~~~~--------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR 160 (340)
T 1sxj_C 95 NQIKDFAST--------------RQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQ 160 (340)
T ss_dssp THHHHHHHB--------------CCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHHHHhh--------------cccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhh
Confidence 111111100 001123467899999966554555555554444445667777775432 1111 112
Q ss_pred CceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 045318 338 VSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAK 390 (1388)
Q Consensus 338 ~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 390 (1388)
...+++.++++++..+.+...+-.. ..... .+..+.+++.++|.+--+.
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~~~~~-~~~i~---~~~~~~i~~~s~G~~r~~~ 209 (340)
T 1sxj_C 161 CTRFRFQPLPQEAIERRIANVLVHE-KLKLS---PNAEKALIELSNGDMRRVL 209 (340)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTT-TCCBC---HHHHHHHHHHHTTCHHHHH
T ss_pred ceeEeccCCCHHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHcCCCHHHHH
Confidence 2478999999999888777654211 11111 3557789999999876443
No 189
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=4.5e-05 Score=75.38 Aligned_cols=87 Identities=11% Similarity=0.238 Sum_probs=41.9
Q ss_pred cceEEEecCCCCcccccccccCCCccceEEEccCCCCccCh-hhhccC--CCCCccceeeccCCCccccc--cccCCCCc
Q 045318 1001 RLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLP-EALMHN--DNAPLESLNVVDCNSLTYIA--RVQLPPSL 1075 (1388)
Q Consensus 1001 ~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p-~~~~~~--~l~~L~~L~l~~c~~l~~~~--~~~~~~sL 1075 (1388)
.|++||+++|.+...--..+.++++|++|+|++|..++.-. ..+... ..++|++|++++|+.+++-. .....++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46667777666444333344566777777777776544321 111100 01235555555555554321 11123455
Q ss_pred cEEEeecCcCcc
Q 045318 1076 KLLHIQSCHDLR 1087 (1388)
Q Consensus 1076 ~~L~l~~c~~L~ 1087 (1388)
+.|++++|++++
T Consensus 142 ~~L~L~~c~~It 153 (176)
T 3e4g_A 142 KYLFLSDLPGVK 153 (176)
T ss_dssp CEEEEESCTTCC
T ss_pred CEEECCCCCCCC
Confidence 555555554444
No 190
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.61 E-value=0.00072 Score=76.12 Aligned_cols=188 Identities=16% Similarity=0.048 Sum_probs=101.2
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLND----DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++++.+.+... ..-.......+-|.++|++|+|||++|+++++. ....| +.++ ..+
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~--~~~~~-----~~v~----~~~ 86 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATE--ANSTF-----FSVS----SSD 86 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHH--HTCEE-----EEEE----HHH
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHH--HCCCE-----EEEc----hHH
Confidence 46899999999998877311 000000023456889999999999999999985 22222 2221 111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHH-HHHhhcCCceEEEEEeCCCCCCh-----------hhhhhhccccc---CCCCCcE
Q 045318 257 VTKAILRSICMHTDADDDLNSLQV-KLKDGLSRKKFLLVLDDMWNDNY-----------GDWTSLRLPFV---AGASGSK 321 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~~~---~~~~gs~ 321 (1388)
+ .... ....+.... .+...-..+..+|++|+++.-.. .....+...+. ....+..
T Consensus 87 l----~~~~------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~ 156 (322)
T 3eie_A 87 L----VSKW------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVL 156 (322)
T ss_dssp H----HTTT------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEE
T ss_pred H----hhcc------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceE
Confidence 1 1110 011112222 22222234668999999964211 01122222221 2234566
Q ss_pred EEEEcCChhHHh-h--cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHH
Q 045318 322 IIVTTRNQSVAS-M--MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTLG 393 (1388)
Q Consensus 322 iivTtR~~~v~~-~--~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 393 (1388)
||.||....... . -.-...+.+...+.++-.+++..++..... ... ......|++.+.|. +-.|..+.
T Consensus 157 vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 157 VLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC-VLT---KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp EEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC-CCC---HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred EEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC-CCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 777776533211 0 022346788999999999999887632211 111 23457788888874 54454443
No 191
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.61 E-value=3.3e-05 Score=82.91 Aligned_cols=79 Identities=19% Similarity=0.242 Sum_probs=58.0
Q ss_pred ccCceeeEEEeCCccccccc---cccccCcccceeeccCccccccccchhccc--ccceeecCCCcchhhcc-------h
Q 045318 562 LKLQCLRVLCLREYNICKIS---NTIGDLKHLRHLDLSETLIETLPESVNTLY--NLHTLLLESCSRLKKLC-------A 629 (1388)
Q Consensus 562 ~~l~~Lr~L~L~~~~i~~lp---~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~L~~~~~~~~lp-------~ 629 (1388)
..++.|++|+|++|.|+.++ ..+..+++|++|+|++|.|..+ .++..+. +|++|+|++|......| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 56778888888888887654 5667888888888888888877 3355555 88888888886554443 2
Q ss_pred hhcccCCCCeee
Q 045318 630 DMGNLIKLRHLN 641 (1388)
Q Consensus 630 ~i~~L~~L~~L~ 641 (1388)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 356778888776
No 192
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.61 E-value=0.00042 Score=78.97 Aligned_cols=186 Identities=15% Similarity=0.050 Sum_probs=98.3
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLND----DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++.+.+.+... ..-.......+-|.|+|++|+|||++|+++++.. ...| +.+.. .+
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--~~~~---~~v~~------~~ 119 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--NSTF---FSVSS------SD 119 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH--TCEE---EEEEH------HH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh--CCCE---EEeeH------HH
Confidence 46899999999988876321 0000000223457899999999999999999862 2222 22221 11
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChh-----------hhhhhccccc---CCCCCcEE
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYG-----------DWTSLRLPFV---AGASGSKI 322 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-----------~~~~l~~~~~---~~~~gs~i 322 (1388)
+. .... ......+...+...-..+..+|+||+++..... ....+...+. ....+..|
T Consensus 120 l~----~~~~-----g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 190 (355)
T 2qp9_X 120 LV----SKWM-----GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLV 190 (355)
T ss_dssp HH----SCC--------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEE
T ss_pred Hh----hhhc-----chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEE
Confidence 11 1110 011111222222222357789999999643210 0122222221 12345667
Q ss_pred EEEcCChh-----HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 045318 323 IVTTRNQS-----VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTL 392 (1388)
Q Consensus 323 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 392 (1388)
|.||.... +.+ .....+.+...+.++-.+++..++..... ... ......|++.+.|. +-.|..+
T Consensus 191 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~~-~~~---~~~l~~la~~t~G~sg~dl~~l 260 (355)
T 2qp9_X 191 LGATNIPWQLDSAIRR--RFERRIYIPLPDLAARTTMFEINVGDTPS-VLT---KEDYRTLGAMTEGYSGSDIAVV 260 (355)
T ss_dssp EEEESCGGGSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTSCB-CCC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EeecCCcccCCHHHHc--ccCEEEEeCCcCHHHHHHHHHHHHhhCCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 76776542 222 23356789999999999998877632211 111 23457788888884 4444444
No 193
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.59 E-value=0.0014 Score=73.45 Aligned_cols=188 Identities=16% Similarity=0.077 Sum_probs=99.5
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLND----DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++.+.+.+..+ ..-.......+-|.++|++|+|||++|+++++... ...| +.+..+.-.+
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~-~~~~---~~i~~~~l~~--- 84 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN-NSTF---FSISSSDLVS--- 84 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT-SCEE---EEEECCSSCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC-CCcE---EEEEhHHHHh---
Confidence 46889999888888766321 00000012346788999999999999999998520 1111 2232221110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-------hh----hhhhcccccC---CCCCcEE
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY-------GD----WTSLRLPFVA---GASGSKI 322 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~~----~~~l~~~~~~---~~~gs~i 322 (1388)
. ........+...+...-..++.+|++|+++.... .. ...+...+.. ...+..|
T Consensus 85 -----------~-~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~v 152 (322)
T 1xwi_A 85 -----------K-WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 152 (322)
T ss_dssp -----------S-SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEE
T ss_pred -----------h-hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEE
Confidence 0 0011112222222222235678999999954210 00 1112211111 2345566
Q ss_pred EEEcCChh-----HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHHH
Q 045318 323 IVTTRNQS-----VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTLG 393 (1388)
Q Consensus 323 ivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~~ 393 (1388)
|.||.... +.+ .....+.+...+.++..+++..++-... .... ......|++.+.|. +-.|..+.
T Consensus 153 I~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~---~~~l~~la~~t~G~sgadl~~l~ 223 (322)
T 1xwi_A 153 LGATNIPWVLDSAIRR--RFEKRIYIPLPEPHARAAMFKLHLGTTQ-NSLT---EADFRELGRKTDGYSGADISIIV 223 (322)
T ss_dssp EEEESCTTTSCHHHHH--TCCEEEECCCCCHHHHHHHHHHHHTTCC-BCCC---HHHHHHHHHTCTTCCHHHHHHHH
T ss_pred EEecCCcccCCHHHHh--hcCeEEEeCCcCHHHHHHHHHHHHhcCC-CCCC---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 66775432 222 2335688999999999999887652211 1111 24467788888886 44454443
No 194
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.59 E-value=0.0026 Score=74.06 Aligned_cols=79 Identities=15% Similarity=0.123 Sum_probs=37.5
Q ss_pred cceEEEeeeeeeeecccCCccccCCCCccEEEEcCC--CchhhhhhhHhhhhhhcCCCCcceEEEecCCCCccccccccc
Q 045318 944 LEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNC--PELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLL 1021 (1388)
Q Consensus 944 L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~--~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~ 1021 (1388)
|+++.+.+. ++.+.. ..|.++++|+.+.+... ..++.+.... +..+.+|+.+.+..+ ........|.
T Consensus 66 L~sI~iP~s-vt~Ig~---~AF~~C~~L~~i~~~~n~p~~l~~Ig~~a------F~~c~~L~~i~~~~~-~~~I~~~aF~ 134 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGS---NAFYNCTSLKRVTIQDNKPSCVKKIGRQA------FMFCSELTDIPILDS-VTEIDSEAFH 134 (394)
T ss_dssp CCEEEECTT-CCEECT---TTTTTCTTCCEEEEGGGCCCCCCEECTTT------TTTCTTCCBCGGGTT-CSEECTTTTT
T ss_pred CEEEEECCC-eeEEhH---HHhhCCccCceEeecCCCCCeeeEechhh------chhcccceeeccCCc-cceehhhhhh
Confidence 555555432 444432 34666666666666432 2244443332 444555555554432 2222233455
Q ss_pred CCCccceEEEcc
Q 045318 1022 SLSSLRQLKISE 1033 (1388)
Q Consensus 1022 ~l~~L~~L~l~~ 1033 (1388)
.+.+|+.+.+..
T Consensus 135 ~c~~L~~i~lp~ 146 (394)
T 4gt6_A 135 HCEELDTVTIPE 146 (394)
T ss_dssp TCTTCCEEECCT
T ss_pred hhcccccccccc
Confidence 566666666643
No 195
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.57 E-value=5.2e-05 Score=74.98 Aligned_cols=89 Identities=11% Similarity=0.160 Sum_probs=57.8
Q ss_pred CCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCC----CCcceEEEecCCCCccc-c
Q 045318 942 PILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGL----PCRLHYLELRSCPSLVK-L 1016 (1388)
Q Consensus 942 ~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~----l~~L~~L~L~~~~~~~~-~ 1016 (1388)
..|+.|++++|.++.... ..+..+++|++|++++|..+++-.... ... .++|++|+|++|..++. -
T Consensus 61 ~~L~~LDLs~~~Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~gL~~------L~~~~~~~~~L~~L~Ls~C~~ITD~G 131 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGF---DHMEGLQYVEKIRLCKCHYIEDGCLER------LSQLENLQKSMLEMEIISCGNVTDKG 131 (176)
T ss_dssp CCEEEEEEESCCCCGGGG---GGGTTCSCCCEEEEESCTTCCHHHHHH------HHTCHHHHHHCCEEEEESCTTCCHHH
T ss_pred ceEeEEeCcCCCccHHHH---HHhcCCCCCCEEEeCCCCccCHHHHHH------HHhcccccCCCCEEEcCCCCcCCHHH
Confidence 368899999987665432 346788888888988888776644332 111 13578888888764432 2
Q ss_pred cccccCCCccceEEEccCCCCcc
Q 045318 1017 PQTLLSLSSLRQLKISECHSMKS 1039 (1388)
Q Consensus 1017 p~~~~~l~~L~~L~l~~~~~l~~ 1039 (1388)
-..+..+++|++|++++|+.++.
T Consensus 132 l~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 132 IIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHhcCCCCCEEECCCCCCCCc
Confidence 22344567777777777766554
No 196
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.51 E-value=9.8e-05 Score=75.44 Aligned_cols=110 Identities=10% Similarity=0.079 Sum_probs=77.4
Q ss_pred ccCCCCCceeeeeccccccc-ccchH----HHHhhccCceeeEEEeCCccccc-----cccccccCcccceeeccCcccc
Q 045318 532 ISDCKHLRTFVSVQWTFSRH-FLSDS----VVHMLLKLQCLRVLCLREYNICK-----ISNTIGDLKHLRHLDLSETLIE 601 (1388)
Q Consensus 532 ~~~~~~Lr~L~~~~~~~~~~-~l~~~----~~~~~~~l~~Lr~L~L~~~~i~~-----lp~~i~~l~~Lr~L~L~~~~i~ 601 (1388)
+...+.|++|. ++.+ .+... +...+...+.|++|+|++|.|.. +...+.....|++|+|++|.|.
T Consensus 32 l~~~~~L~~L~-----L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVN-----LNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEE-----CTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEE-----ecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 45677788884 5555 55543 33444667888899999888763 4455666678889999988877
Q ss_pred c-----cccchhcccccceeec--CCCcchhh----cchhhcccCCCCeeecCCCC
Q 045318 602 T-----LPESVNTLYNLHTLLL--ESCSRLKK----LCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 602 ~-----lp~~i~~L~~L~~L~L--~~~~~~~~----lp~~i~~L~~L~~L~l~~~~ 646 (1388)
. +...+...++|++|+| ++|..... +...+...++|++|++++|.
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 4 5667777788999999 66654322 44555667888888888886
No 197
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.51 E-value=0.00066 Score=77.54 Aligned_cols=188 Identities=11% Similarity=0.048 Sum_probs=99.8
Q ss_pred CccccchhhHHHHHHHHhc----CCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++++.+.+.. ...-.......+.|.|+|++|+|||++|+++++.. ... .+.+..+.-..
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~--~~~---~~~i~~~~l~~--- 155 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS--GAT---FFSISASSLTS--- 155 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT--TCE---EEEEEGGGGCC---
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc--CCe---EEEEehHHhhc---
Confidence 4689999999998887642 11000000234578899999999999999998752 222 23333322111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHH-HHHhhcCCceEEEEEeCCCCCC-----------hhhhhhhcccccC----CCCCc
Q 045318 257 VTKAILRSICMHTDADDDLNSLQV-KLKDGLSRKKFLLVLDDMWNDN-----------YGDWTSLRLPFVA----GASGS 320 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~----~~~gs 320 (1388)
. .......... .+...-..++.+|+||+++.-. ...+..+...+.. ...+.
T Consensus 156 -----------~--~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v 222 (357)
T 3d8b_A 156 -----------K--WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRI 222 (357)
T ss_dssp -----------S--STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCE
T ss_pred -----------c--ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCE
Confidence 0 0001111111 1222223567899999993210 0112222222221 12345
Q ss_pred EEEEEcCChh-HHhhc--CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHH
Q 045318 321 KIIVTTRNQS-VASMM--GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAAKTLG 393 (1388)
Q Consensus 321 ~iivTtR~~~-v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai~~~~ 393 (1388)
.||.||.... +.... .....+.+...+.++..+++...+.... .... .+....|++.+.| .+-++..+.
T Consensus 223 ~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~-~~l~---~~~l~~la~~t~G~s~~dl~~l~ 295 (357)
T 3d8b_A 223 LVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQ-CCLS---EEEIEQIVQQSDAFSGADMTQLC 295 (357)
T ss_dssp EEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSC-BCCC---HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcC-CCcc---HHHHHHHHHHcCCCCHHHHHHHH
Confidence 6666775432 11111 2224678999999998888877652211 1111 2456778888888 455555554
No 198
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.48 E-value=0.0018 Score=72.18 Aligned_cols=185 Identities=13% Similarity=0.088 Sum_probs=97.5
Q ss_pred CccccchhhHHHHHHHHhcCCC----CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDL----NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~----~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++.+.+.+..... -..-....+.|.|+|++|+||||+|+.+++.. ...| +.+..+.-..
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~--~~~~---~~i~~~~l~~--- 92 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC--SATF---LNISAASLTS--- 92 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--TCEE---EEEESTTTSS---
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--CCCe---EEeeHHHHhh---
Confidence 4689999999999887643100 00000123578899999999999999999752 2222 2233322110
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHH-HHHhhcCCceEEEEEeCCCCCCh-----------hhhhhhccc---ccC--CCCC
Q 045318 257 VTKAILRSICMHTDADDDLNSLQV-KLKDGLSRKKFLLVLDDMWNDNY-----------GDWTSLRLP---FVA--GASG 319 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~-~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~---~~~--~~~g 319 (1388)
. ...+...... .+......++.+|++|++..-.. .....+... ++. .+.+
T Consensus 93 -----------~--~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~ 159 (297)
T 3b9p_A 93 -----------K--YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDR 159 (297)
T ss_dssp -----------S--SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------C
T ss_pred -----------c--ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCc
Confidence 0 0011122222 22222235678999999954210 001111111 111 1234
Q ss_pred cEEEEEcCChh-----HHhhcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 045318 320 SKIIVTTRNQS-----VASMMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTL 392 (1388)
Q Consensus 320 s~iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~ 392 (1388)
..||.||.... +...+ ...+.+...+.++..+++...+-.... ... .+....+++.+.|.+- ++..+
T Consensus 160 v~vi~~tn~~~~l~~~l~~R~--~~~i~~~~p~~~~r~~il~~~~~~~~~-~~~---~~~~~~la~~~~g~~~~~l~~l 232 (297)
T 3b9p_A 160 IVVLAATNRPQELDEAALRRF--TKRVYVSLPDEQTRELLLNRLLQKQGS-PLD---TEALRRLAKITDGYSGSDLTAL 232 (297)
T ss_dssp EEEEEEESCGGGBCHHHHHHC--CEEEECCCCCHHHHHHHHHHHHGGGSC-CSC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EEEEeecCChhhCCHHHHhhC--CeEEEeCCcCHHHHHHHHHHHHHhcCC-CCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 56777776532 22222 246778888888888888776522111 111 2456778889998775 44444
No 199
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.48 E-value=0.0016 Score=72.31 Aligned_cols=182 Identities=13% Similarity=0.099 Sum_probs=97.3
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..++|.+..++++.+++...... .......+.|.|+|++|+|||++|+++++.. ... ++.+. ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~--~~~-----~i~v~----~~ 83 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----GP 83 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCE-----EEEEC----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh--CCC-----EEEEE----hH
Confidence 45899999888888776431000 0000233578899999999999999999852 222 23332 22
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhhhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY--------------GDWTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~~~~--~~~g 319 (1388)
++.. ...+.. .... ...+.........+|++|+++.-.. .....+...+.. ...+
T Consensus 84 ~l~~----~~~g~~--~~~~---~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 154 (301)
T 3cf0_A 84 ELLT----MWFGES--EANV---REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKN 154 (301)
T ss_dssp HHHH----HHHTTC--TTHH---HHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSS
T ss_pred HHHh----hhcCch--HHHH---HHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCC
Confidence 3322 221111 1112 2223333335678999999953100 011222222211 2345
Q ss_pred cEEEEEcCChhHHh-h-cC---CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH
Q 045318 320 SKIIVTTRNQSVAS-M-MG---SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL 387 (1388)
Q Consensus 320 s~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl 387 (1388)
..||.||....... . .. -...+.+...+.++-.+++....-... .....++ ..+++.+.|.|-
T Consensus 155 v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~-~~~~~~~----~~la~~~~g~sg 222 (301)
T 3cf0_A 155 VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSP-VAKDVDL----EFLAKMTNGFSG 222 (301)
T ss_dssp EEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC-BCSSCCH----HHHHHTCSSCCH
T ss_pred EEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCC-CCccchH----HHHHHHcCCCCH
Confidence 67888886653221 1 12 225789999999998888877652211 1112222 345566777653
No 200
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=0.00014 Score=75.82 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=61.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH 268 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~ 268 (1388)
.++.+.+++...... .....|.|+|++|+||||||+++++.. ......++|+.+ .++...+......
T Consensus 37 ~~~~~~~~~~~~~~~----~~~~~~~l~G~~GtGKT~la~~i~~~~--~~~~~~~~~~~~------~~~~~~~~~~~~~- 103 (202)
T 2w58_A 37 AIRFAERFVAEYEPG----KKMKGLYLHGSFGVGKTYLLAAIANEL--AKRNVSSLIVYV------PELFRELKHSLQD- 103 (202)
T ss_dssp HHHHHHHHHHHCCSS----CCCCEEEEECSTTSSHHHHHHHHHHHH--HTTTCCEEEEEH------HHHHHHHHHC----
T ss_pred HHHHHHHHHHHhhhc----cCCCeEEEECCCCCCHHHHHHHHHHHH--HHcCCeEEEEEh------HHHHHHHHHHhcc-
Confidence 445555565543211 122578899999999999999999863 222334556644 2344444332211
Q ss_pred CCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhh--hcc-cccCC-CCCcEEEEEcCC
Q 045318 269 TDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTS--LRL-PFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 269 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--l~~-~~~~~-~~gs~iivTtR~ 328 (1388)
.........+.+ .-+|||||++......|.. +.. .+... ..+.++|+||..
T Consensus 104 ----~~~~~~~~~~~~-----~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~~~~~~i~tsn~ 158 (202)
T 2w58_A 104 ----QTMNEKLDYIKK-----VPVLMLDDLGAEAMSSWVRDDVFGPILQYRMFENLPTFFTSNF 158 (202)
T ss_dssp ----CCCHHHHHHHHH-----SSEEEEEEECCC---CCGGGTTHHHHHHHHHHTTCCEEEEESS
T ss_pred ----chHHHHHHHhcC-----CCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHhCCCCEEEEcCC
Confidence 112333333322 2399999997654344432 221 11111 245678888874
No 201
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.46 E-value=6.4e-05 Score=73.07 Aligned_cols=110 Identities=11% Similarity=0.075 Sum_probs=62.0
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAI 261 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i 261 (1388)
.++|++..++++.+.+..... .. .-|.|+|..|+|||++|+.+++... -++.+.-..-.....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~-----~~-~~vll~G~~GtGKt~lA~~i~~~~~--------~~~~~~~~~~~~~~~--- 67 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK-----RT-SPVFLTGEAGSPFETVARYFHKNGT--------PWVSPARVEYLIDMP--- 67 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT-----CS-SCEEEEEETTCCHHHHHGGGCCTTS--------CEECCSSTTHHHHCH---
T ss_pred CceeCCHHHHHHHHHHHHHhC-----CC-CcEEEECCCCccHHHHHHHHHHhCC--------CeEEechhhCChHhh---
Confidence 578999998888887654211 11 2367999999999999999998522 223222111011110
Q ss_pred HHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-CCCcEEEEEcCC
Q 045318 262 LRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-ASGSKIIVTTRN 328 (1388)
Q Consensus 262 ~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-~~gs~iivTtR~ 328 (1388)
..+.+.. +.-.+++|++..-.......+...+... ..+.+||+||..
T Consensus 68 ------------------~~~~~~a--~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~ 115 (143)
T 3co5_A 68 ------------------MELLQKA--EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSY 115 (143)
T ss_dssp ------------------HHHHHHT--TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEE
T ss_pred ------------------hhHHHhC--CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 1111111 2347899999776655555554444332 345678888753
No 202
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.45 E-value=0.00042 Score=82.24 Aligned_cols=147 Identities=14% Similarity=0.164 Sum_probs=78.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---ccccC-Cc-eEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VESHF-DL-KAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~F-~~-~~wv~~s~~~~~~ 255 (1388)
+.++||+.+++++...+.... ..-+.++|++|+|||++|+.++.... +.... +. .+.+..+
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~--------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~------ 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG------ 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC---------
T ss_pred CCccCcHHHHHHHHHHHhccC--------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC------
Confidence 459999999999999987532 13457999999999999999987521 00001 11 1112221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhh-
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASM- 334 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~- 334 (1388)
....+. -......+...+. ..++.+|++|.- .+....+...+. . ...++|.+|........
T Consensus 246 -------~~~~g~--~e~~~~~~~~~~~---~~~~~iLfiD~~----~~a~~~L~~~L~-~-g~v~vI~at~~~e~~~~~ 307 (468)
T 3pxg_A 246 -------TKYRGE--FEDRLKKVMDEIR---QAGNIILFIDAA----IDASNILKPSLA-R-GELQCIGATTLDEYRKYI 307 (468)
T ss_dssp ----------------CTTHHHHHHHHH---TCCCCEEEECC------------CCCTT-S-SSCEEEEECCTTTTHHHH
T ss_pred -------ccccch--HHHHHHHHHHHHH---hcCCeEEEEeCc----hhHHHHHHHhhc-C-CCEEEEecCCHHHHHHHh
Confidence 000000 0112222322222 356788999921 122223333332 2 23566666655432111
Q ss_pred ------cCCCceEeCCCCChhhHHHHHHHcc
Q 045318 335 ------MGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 335 ------~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
...-.++.+.+.+.++..+++...+
T Consensus 308 ~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~ 338 (468)
T 3pxg_A 308 EKDAALERRFQPIQVDQPSVDESIQILQGLR 338 (468)
T ss_dssp TTCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred hcCHHHHHhCccceeCCCCHHHHHHHHHHHH
Confidence 1112469999999999999998764
No 203
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.43 E-value=0.0028 Score=74.50 Aligned_cols=189 Identities=15% Similarity=0.083 Sum_probs=100.2
Q ss_pred CccccchhhHHHHHHHHhc----CCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++.+.+.+.. +..-.......+-|.++|++|+|||++|+++++.. ....++.++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~------~~~~~~~v~~~~---- 203 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA------NNSTFFSISSSD---- 203 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC------CSSEEEEECCC-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc------CCCCEEEEeHHH----
Confidence 4689999999998887632 11000000234678899999999999999999852 112234443321
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-------h----hhhhhcccccC---CCCCcEE
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY-------G----DWTSLRLPFVA---GASGSKI 322 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-------~----~~~~l~~~~~~---~~~gs~i 322 (1388)
+. ....+. ....+..+.... -..++.+|++|+++.... . ....+...+.. ...+..|
T Consensus 204 l~----~~~~g~--~~~~~~~~f~~a---~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~v 274 (444)
T 2zan_A 204 LV----SKWLGE--SEKLVKNLFQLA---RENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILV 274 (444)
T ss_dssp --------------CCCTHHHHHHHH---HHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEE
T ss_pred HH----hhhcch--HHHHHHHHHHHH---HHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEE
Confidence 11 111111 112222222222 235678999999964310 0 11222222221 2345677
Q ss_pred EEEcCChhHHh-h-c-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 045318 323 IVTTRNQSVAS-M-M-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTL 392 (1388)
Q Consensus 323 ivTtR~~~v~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 392 (1388)
|.||....... . . .....+.+...+.++..++|..++.... .... ......|++.+.|. +-.|..+
T Consensus 275 I~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~-~~l~---~~~l~~la~~t~G~sgadl~~l 344 (444)
T 2zan_A 275 LGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQ-NSLT---EADFQELGRKTDGYSGADISII 344 (444)
T ss_dssp EEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-EECC---HHHHHHHHHHTTTCCHHHHHHH
T ss_pred EecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCC-CCCC---HHHHHHHHHHcCCCCHHHHHHH
Confidence 77776542211 1 1 2234678888888888888887752211 1111 23456788888884 4444444
No 204
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.42 E-value=0.00052 Score=75.84 Aligned_cols=147 Identities=8% Similarity=-0.016 Sum_probs=91.5
Q ss_pred chhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc-cc-ccCCceEEEEeCC-ccCHHHHHHHHH
Q 045318 186 RDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM-VE-SHFDLKAWTCVSD-DFDAIKVTKAIL 262 (1388)
Q Consensus 186 r~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~-~~-~~F~~~~wv~~s~-~~~~~~~~~~i~ 262 (1388)
-++.++.+...+..+ +.+...++|+.|+||||+|+.+.+... .. .+.+ ..++..+. ...++++ +++.
T Consensus 2 ~~~~~~~L~~~i~~~--------~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d-~~~l~~~~~~~~id~i-r~li 71 (305)
T 2gno_A 2 AKDQLETLKRIIEKS--------EGISILINGEDLSYPREVSLELPEYVEKFPPKASD-VLEIDPEGENIGIDDI-RTIK 71 (305)
T ss_dssp --CHHHHHHHHHHTC--------SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTT-EEEECCSSSCBCHHHH-HHHH
T ss_pred hHHHHHHHHHHHHCC--------CCcEEEEECCCCCCHHHHHHHHHHhCchhhccCCC-EEEEcCCcCCCCHHHH-HHHH
Confidence 344556666666543 257889999999999999999987411 11 1222 34444332 2333322 3343
Q ss_pred HHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh-hHHhhcCCCceE
Q 045318 263 RSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ-SVASMMGSVSAY 341 (1388)
Q Consensus 263 ~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~-~v~~~~~~~~~~ 341 (1388)
+.+.... ..+++-++|+|+++.-.....+.+...+......+.+|++|.+. .+....... .+
T Consensus 72 ~~~~~~p----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~ 134 (305)
T 2gno_A 72 DFLNYSP----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VF 134 (305)
T ss_dssp HHHTSCC----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SE
T ss_pred HHHhhcc----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eE
Confidence 3332211 13556789999997766666777776665555677777776443 344444444 89
Q ss_pred eCCCCChhhHHHHHHHcc
Q 045318 342 ELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 342 ~l~~L~~~~~~~lf~~~~ 359 (1388)
++.++++++..+.+.+.+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887765
No 205
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.37 E-value=6.8e-05 Score=85.27 Aligned_cols=14 Identities=21% Similarity=-0.052 Sum_probs=8.7
Q ss_pred CCCCCeEEEEeeCC
Q 045318 712 KRNLDVLFLEWTNS 725 (1388)
Q Consensus 712 ~~~L~~L~L~~~~~ 725 (1388)
+++|+.|.|.+|.+
T Consensus 251 ~p~Lr~L~L~~~~i 264 (362)
T 2ra8_A 251 FPNLKWLGIVDAEE 264 (362)
T ss_dssp CTTCCEEEEESCTT
T ss_pred CCCcCEEeCCCCCC
Confidence 46677777765543
No 206
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.34 E-value=0.00012 Score=83.26 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=27.5
Q ss_pred cccCcccceeeccCccccccccchhcccccceeecCCCcchhhcchhhc--ccCCCCeeecC
Q 045318 584 IGDLKHLRHLDLSETLIETLPESVNTLYNLHTLLLESCSRLKKLCADMG--NLIKLRHLNNY 643 (1388)
Q Consensus 584 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~L~~~~~~~~lp~~i~--~L~~L~~L~l~ 643 (1388)
+..+++|+.|+|+++.-..+|. + .+.+|++|++..|.........+. .+++|++|+++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence 3444555555555542123333 2 255666666655533222222232 56666666654
No 207
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.32 E-value=0.0023 Score=74.11 Aligned_cols=189 Identities=13% Similarity=0.104 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHhcC----CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLND----DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++.+.+++... ..........+-|.|+|++|+|||++|+++++. ....| +.+..+.-.. .
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~--~~~~~---~~v~~~~l~~--~ 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAE--SNATF---FNISAASLTS--K 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHH--TTCEE---EEECSCCC-----
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHh--hcCcE---EEeeHHHhhc--c
Confidence 56899999999998877321 000000012357889999999999999999875 22221 2222222111 0
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCC-----------hhhhhhhcccccC----CCCCcE
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDN-----------YGDWTSLRLPFVA----GASGSK 321 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~l~~~~~~----~~~gs~ 321 (1388)
. . ......+...+...-.....+|+||+++.-. ......+...+.. ......
T Consensus 188 ~-------~------g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~ 254 (389)
T 3vfd_A 188 Y-------V------GEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVL 254 (389)
T ss_dssp -----------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEE
T ss_pred c-------c------chHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEE
Confidence 0 0 0001111112222223455799999995320 0011122211111 123455
Q ss_pred EEEEcCChhHH-hh-c-CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHH
Q 045318 322 IIVTTRNQSVA-SM-M-GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPL-AAKTLG 393 (1388)
Q Consensus 322 iivTtR~~~v~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Pl-ai~~~~ 393 (1388)
||.||...... .. . .....+.+...+.++..+++...+-... ... ..+....+++.+.|..- ++..+.
T Consensus 255 vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~-~~l---~~~~~~~la~~~~g~~~~~l~~L~ 326 (389)
T 3vfd_A 255 VMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQG-SPL---TQKELAQLARMTDGYSGSDLTALA 326 (389)
T ss_dssp EEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSC-CCS---CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred EEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcC-CCC---CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 66666543211 11 1 2224688999999999999887763211 111 12456788888888543 554443
No 208
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.28 E-value=0.0003 Score=90.62 Aligned_cols=45 Identities=24% Similarity=0.439 Sum_probs=37.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++||+++++++++.+.... ..-+.++|++|+||||+|+.+++.
T Consensus 170 d~viGr~~~i~~l~~~l~~~~--------~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 170 DPVIGRDEEIRRVIQILLRRT--------KNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp CCCCSCHHHHHHHHHHHHCSS--------CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHhcCC--------CCceEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999986532 234679999999999999999975
No 209
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.26 E-value=5.8e-05 Score=80.97 Aligned_cols=95 Identities=18% Similarity=0.082 Sum_probs=68.3
Q ss_pred EEeCCccccccccc----cccCcccceeeccCcccccc---ccchhcccccceeecCCCcchhhcchhhcccC--CCCee
Q 045318 570 LCLREYNICKISNT----IGDLKHLRHLDLSETLIETL---PESVNTLYNLHTLLLESCSRLKKLCADMGNLI--KLRHL 640 (1388)
Q Consensus 570 L~L~~~~i~~lp~~----i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~--~L~~L 640 (1388)
++++.|....++.. ..++++|++|+|++|.|..+ |..+..+++|++|+|++|... .+ ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~-~~-~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK-SE-RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC-SG-GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC-Cc-hhhhhcccCCcceE
Confidence 55666655544432 25788999999999998865 467789999999999998543 33 3455555 99999
Q ss_pred ecCCCCCcccCcC-------CCCCCCCCCCCCc
Q 045318 641 NNYNVPLLEGMPL-------RIGHLSCLQTLPY 666 (1388)
Q Consensus 641 ~l~~~~~~~~~p~-------~i~~L~~L~~L~~ 666 (1388)
++.+|.+...+|. .+..+++|+.|+.
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999996655542 2556677777643
No 210
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.23 E-value=0.029 Score=64.74 Aligned_cols=80 Identities=9% Similarity=0.124 Sum_probs=38.7
Q ss_pred ccCCCcceEEEeeeeeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccc
Q 045318 939 QELPILEELAICNTKVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQ 1018 (1388)
Q Consensus 939 ~~l~~L~~L~l~~~~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~ 1018 (1388)
....+|+++.+.. .++.+.. ..|.++.+|+.+.+.+ .++.+.... +... +|+.+.+..+ +..++.
T Consensus 43 ~~~~~i~~v~ip~-~vt~Ig~---~aF~~C~~L~~I~lp~--~v~~Ig~~a------F~~c-~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 43 KDRDRISEVRVNS-GITSIGE---ANFNSCYNMTKVTVAS--TVTSIGDGA------FADT-KLQSYTGMER--VKKFGD 107 (379)
T ss_dssp GGGGGCSEEEECT-TEEEECT---TTTTTCTTCCEEEECT--TCCEECTTT------TTTC-CCCEEEECTT--CCEECT
T ss_pred ccccCCEEEEeCC-CccChHH---HHhhCCCCCCEEEeCC--cceEechhh------hcCC-CCceEECCce--eeEecc
Confidence 3445566666643 3455543 3466777777777743 244444333 3333 4555555332 333332
Q ss_pred cccCCCccceEEEcc
Q 045318 1019 TLLSLSSLRQLKISE 1033 (1388)
Q Consensus 1019 ~~~~l~~L~~L~l~~ 1033 (1388)
......+|+.+.+.+
T Consensus 108 ~aF~~~~L~~i~lp~ 122 (379)
T 4h09_A 108 YVFQGTDLDDFEFPG 122 (379)
T ss_dssp TTTTTCCCSEEECCT
T ss_pred ceeccCCcccccCCC
Confidence 222223566666654
No 211
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.21 E-value=0.0012 Score=74.27 Aligned_cols=138 Identities=15% Similarity=0.175 Sum_probs=72.2
Q ss_pred ccccchhhHHHHHHHHhcCCCC-CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLN-ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++|.+..++.+...+...... .........+.++|++|+||||+|+.+++.. ...-...+.+.++...... ....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~--~~~~~~~~~~~~~~~~~~~-~~~~ 94 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL--FDTEEAMIRIDMTEYMEKH-AVSR 94 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHH--HSCGGGEEEEEGGGCCSTT-HHHH
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHH--cCCCcceEEeecccccccc-cHHH
Confidence 4779988888888777542100 0000224578999999999999999999852 1111223445444322211 1111
Q ss_pred HHHHhcCCCC--CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCC-----------CCcEEEEEcC
Q 045318 261 ILRSICMHTD--ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA-----------SGSKIIVTTR 327 (1388)
Q Consensus 261 i~~~l~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iivTtR 327 (1388)
+ ++.... .......+...+.. ...-++++|++.......+..+...+..+. ....||.||.
T Consensus 95 l---~g~~~~~~~~~~~~~~~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ttn 168 (311)
T 4fcw_A 95 L---IGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSN 168 (311)
T ss_dssp H---HCCCTTSTTTTTCCHHHHHHHH---CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEEEES
T ss_pred h---cCCCCccccccccchHHHHHHh---CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEEecc
Confidence 1 221111 01111222222222 234699999997766555555544433211 2344777776
Q ss_pred C
Q 045318 328 N 328 (1388)
Q Consensus 328 ~ 328 (1388)
.
T Consensus 169 ~ 169 (311)
T 4fcw_A 169 L 169 (311)
T ss_dssp T
T ss_pred c
Confidence 5
No 212
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.21 E-value=0.0025 Score=81.25 Aligned_cols=157 Identities=15% Similarity=0.211 Sum_probs=86.4
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cc-ccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VE-SHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~-~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++||+.+++++.+.+.... ..-+.|+|.+|+||||+|+.+++... +. ......+|. +. .. .
T Consensus 186 d~~iGr~~~i~~l~~~l~~~~--------~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~-~~--~~--~ 252 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRRR--------KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS-LD--IG--S 252 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSSS--------SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE-CC--CC---
T ss_pred CCccCCHHHHHHHHHHHhccC--------CCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE-Ec--HH--H
Confidence 468999999999999986532 23467999999999999999987521 11 112233331 11 00 0
Q ss_pred HHHHHHHHhcCCCCCCCcHHHH-HHHHHhhcCCceEEEEEeCCCCC--------ChhhhhhhcccccCCCCCcEEEEEcC
Q 045318 257 VTKAILRSICMHTDADDDLNSL-QVKLKDGLSRKKFLLVLDDMWND--------NYGDWTSLRLPFVAGASGSKIIVTTR 327 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~~~l~~~~~~~~~gs~iivTtR 327 (1388)
+ +... ....+.++. ...+...-..++.+|++||+..- ...+...+..++... .+.++|.+|.
T Consensus 253 l-------~~~~-~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~-~~~~~I~at~ 323 (758)
T 1r6b_X 253 L-------LAGT-KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTT 323 (758)
T ss_dssp ---------CCC-CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS-CCCEEEEEEC
T ss_pred H-------hccc-cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC-CCeEEEEEeC
Confidence 0 0001 111222222 22233332346789999999643 112222222233222 3456666665
Q ss_pred ChhHHhhcC-------CCceEeCCCCChhhHHHHHHHcc
Q 045318 328 NQSVASMMG-------SVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 328 ~~~v~~~~~-------~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
......... .-..+.+.+.+.++..+++...+
T Consensus 324 ~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_dssp HHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred chHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHH
Confidence 544321111 11368899999999988887643
No 213
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.20 E-value=0.0069 Score=70.49 Aligned_cols=110 Identities=10% Similarity=0.064 Sum_probs=69.1
Q ss_pred cchhhhccCCCcceEEEeee---eeeeecccCCccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecC
Q 045318 933 LTGLLNQELPILEELAICNT---KVTYLWQTGSGLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRS 1009 (1388)
Q Consensus 933 l~~~~~~~l~~L~~L~l~~~---~l~~l~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~ 1009 (1388)
+....|.++.+|+.+.+.++ .++.+.. ..|.++.+|+.+.+.+ .++.+.... +..+.+|+.+.+..
T Consensus 78 Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~---~aF~~c~~L~~i~~~~--~~~~I~~~a------F~~c~~L~~i~lp~ 146 (394)
T 4gt6_A 78 IGSNAFYNCTSLKRVTIQDNKPSCVKKIGR---QAFMFCSELTDIPILD--SVTEIDSEA------FHHCEELDTVTIPE 146 (394)
T ss_dssp ECTTTTTTCTTCCEEEEGGGCCCCCCEECT---TTTTTCTTCCBCGGGT--TCSEECTTT------TTTCTTCCEEECCT
T ss_pred EhHHHhhCCccCceEeecCCCCCeeeEech---hhchhcccceeeccCC--ccceehhhh------hhhhcccccccccc
Confidence 44556678889999999876 3666644 4577777777665543 344444433 66678899999865
Q ss_pred CCCcccccccccCCCccceEEEccCCCCccChhhhccCCCCCccceeec
Q 045318 1010 CPSLVKLPQTLLSLSSLRQLKISECHSMKSLPEALMHNDNAPLESLNVV 1058 (1388)
Q Consensus 1010 ~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~~~~~~~l~~L~~L~l~ 1058 (1388)
. ........|..+.+|+.+.+.++ ++.+....+. .+.|+++.+.
T Consensus 147 ~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~--~~~l~~i~ip 190 (394)
T 4gt6_A 147 G-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT--GTALTQIHIP 190 (394)
T ss_dssp T-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT--TCCCSEEEEC
T ss_pred e-eeeecccceecccccccccccce--eeEecccccc--ccceeEEEEC
Confidence 3 33334456778889998888764 4444433322 2456666653
No 214
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.19 E-value=0.0043 Score=69.98 Aligned_cols=181 Identities=16% Similarity=0.118 Sum_probs=96.4
Q ss_pred CccccchhhHHHHHHHHhcC----CC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLND----DL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~----~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|-++.+++|.+.+.-+ +. ....-...+-|.++|++|+|||.||+++++. ....| +.|..+.-.+
T Consensus 148 ~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~s-- 220 (405)
T 4b4t_J 148 DMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHH--TDCKF---IRVSGAELVQ-- 220 (405)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHH--HTCEE---EEEEGGGGSC--
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHh--hCCCc---eEEEhHHhhc--
Confidence 46889998888887654321 00 0000023456889999999999999999986 33333 2233222111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------hh------hhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY--------GD------WTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------~~------~~~l~~~~~~--~~~g 319 (1388)
. .-......+...+...-...+++|++|+++.... .+ ...+...+.. ...+
T Consensus 221 ------------k-~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 287 (405)
T 4b4t_J 221 ------------K-YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKN 287 (405)
T ss_dssp ------------S-STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCC
T ss_pred ------------c-ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCC
Confidence 0 0001111111222222235689999999965210 01 1112222211 2345
Q ss_pred cEEEEEcCChhHHh-----hcCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 320 SKIIVTTRNQSVAS-----MMGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 320 s~iivTtR~~~v~~-----~~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
-.||.||...+... .-.-+..+.+..-+.++-.++|..+.- ........+ ...+++.+.|.-
T Consensus 288 V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~-~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 288 IKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR-KMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp EEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-TSBCCSSCC----HHHHHHHCCSCC
T ss_pred eEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-CCCCCccCC----HHHHHHHCCCCC
Confidence 56777776543321 113346789999999988999887652 222222223 356777887753
No 215
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.19 E-value=0.0002 Score=69.85 Aligned_cols=24 Identities=29% Similarity=0.273 Sum_probs=21.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDH 234 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~ 234 (1388)
..++|+|+.|+|||||++.++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999853
No 216
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.16 E-value=0.00059 Score=74.54 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=33.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..+.++.+.+..... . ...|.|+|..|+|||++|+.+++.
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~-----~-~~~vll~G~~GtGKt~la~~i~~~ 52 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAP-----L-DKPVLIIGERGTGKELIASRLHYL 52 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTT-----S-CSCEEEECCTTSCHHHHHHHHHHT
T ss_pred ccceeCCHHHHHHHHHHHHHhC-----C-CCCEEEECCCCCcHHHHHHHHHHh
Confidence 3478999999888877654211 1 135679999999999999999985
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.14 E-value=0.002 Score=76.16 Aligned_cols=187 Identities=11% Similarity=0.083 Sum_probs=99.0
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-----CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-----DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-----~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..++|.+..++++.+++....... ......+-|.|+|++|+|||++|+++++. ....| +.+.. .
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~--~~~~f---v~vn~------~ 272 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLING------P 272 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHH--CSSEE---EEEEH------H
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHH--hCCCE---EEEEc------h
Confidence 458999999999988764320000 00022345889999999999999999875 22222 22221 1
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh-----------hhhhhhcccccC--CCCCcEE
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY-----------GDWTSLRLPFVA--GASGSKI 322 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~-----------~~~~~l~~~~~~--~~~gs~i 322 (1388)
++ ...+. ......+...+.....+++.+|+||+++.-.. .....+...+.. ...+..|
T Consensus 273 ~l----~~~~~-----g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~v 343 (489)
T 3hu3_A 273 EI----MSKLA-----GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (489)
T ss_dssp HH----HTSCT-----THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEE
T ss_pred Hh----hhhhc-----chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEE
Confidence 11 11110 11112223333344456678999999932100 111223222221 2235567
Q ss_pred EEEcCChhH-Hhhc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC-hHHHHHH
Q 045318 323 IVTTRNQSV-ASMM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL-PLAAKTL 392 (1388)
Q Consensus 323 ivTtR~~~v-~~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~-Plai~~~ 392 (1388)
|.||..... ...+ .-...+.+...+.++-.+++..++-. ........ ..++++.+.|. +-.+..+
T Consensus 344 IaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~-~~l~~~~~----l~~la~~t~g~s~~dL~~L 414 (489)
T 3hu3_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVD----LEQVANETHGHVGADLAAL 414 (489)
T ss_dssp EEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTT-SCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred EEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhc-CCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence 777765432 1111 22246899999999999999887622 11112222 24566677764 4444433
No 218
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.12 E-value=0.0012 Score=84.09 Aligned_cols=148 Identities=14% Similarity=0.163 Sum_probs=79.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcc---cccc-CCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHM---VESH-FDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~---~~~~-F~~~~wv~~s~~~~~~~ 256 (1388)
..++||+.+++++...+.... ..-+.++|++|+|||++|+.+++... +... .+..+ +.+.-
T Consensus 180 d~iiG~~~~i~~l~~~l~~~~--------~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~-~~~~~------ 244 (758)
T 3pxi_A 180 DPVIGRSKEIQRVIEVLSRRT--------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRV-MTLDM------ 244 (758)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS--------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCE-ECC--------
T ss_pred CCccCchHHHHHHHHHHhCCC--------CCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeE-EEecc------
Confidence 469999999999999987632 12367999999999999999987520 1111 11111 11111
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHhhc-
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMM- 335 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~- 335 (1388)
.....+ .-...+..+ +......++.+|++|.- . +....+...+. ....++|.||.........
T Consensus 245 -----g~~~~G--~~e~~l~~~---~~~~~~~~~~iLfiD~~--~--~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~ 308 (758)
T 3pxi_A 245 -----GTKYRG--EFEDRLKKV---MDEIRQAGNIILFIDAA--I--DASNILKPSLA--RGELQCIGATTLDEYRKYIE 308 (758)
T ss_dssp ---------------CTTHHHH---HHHHHTCCCCEEEECC------------CCCTT--SSSCEEEEECCTTTTHHHHT
T ss_pred -----cccccc--hHHHHHHHH---HHHHHhcCCEEEEEcCc--h--hHHHHHHHHHh--cCCEEEEeCCChHHHHHHhh
Confidence 000000 011122222 23333367789999922 1 12222333332 2245666666554421111
Q ss_pred ------CCCceEeCCCCChhhHHHHHHHcc
Q 045318 336 ------GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 336 ------~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
..-..+.+...+.++..+++....
T Consensus 309 ~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 338 (758)
T 3pxi_A 309 KDAALERRFQPIQVDQPSVDESIQILQGLR 338 (758)
T ss_dssp TCSHHHHSEEEEECCCCCHHHHHHHHHHTT
T ss_pred ccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 111469999999999999998654
No 219
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.12 E-value=0.0026 Score=72.94 Aligned_cols=53 Identities=28% Similarity=0.184 Sum_probs=37.4
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+.|-++.+++|.+.+...-.. ...-...+-|.++|++|+|||++|+++++.
T Consensus 172 ~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 172 ADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 56889999998887765321000 000133456889999999999999999986
No 220
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.07 E-value=0.00067 Score=75.33 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=36.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|+...+.++.+.+..... ....|.|+|..|+|||++|+.+++.
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 48 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP------SDATVLIHGDSGTGKELVARALHAC 48 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS------TTSCEEEESCTTSCHHHHHHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHHhC------CCCcEEEECCCCchHHHHHHHHHHh
Confidence 3588999999998888765321 1234679999999999999999974
No 221
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.00 E-value=0.002 Score=72.35 Aligned_cols=53 Identities=25% Similarity=0.317 Sum_probs=36.9
Q ss_pred CccccchhhHHHHHHHHhcC--CCCCC----CCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLND--DLNAD----CDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~--~~~~~----~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..++.+...+... ..... .......+.++|++|+|||++|+.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999988877541 00000 0012245779999999999999999975
No 222
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.0069 Score=69.58 Aligned_cols=180 Identities=14% Similarity=0.123 Sum_probs=96.1
Q ss_pred CccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|-++.+++|.+.+.-+-.. ...-...+-|.++|++|+|||++|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e--~~~~~---~~v~~s~l~s-- 253 (437)
T 4b4t_L 181 DGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAAT--IGANF---IFSPASGIVD-- 253 (437)
T ss_dssp GGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGTCC--
T ss_pred hHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHH--hCCCE---EEEehhhhcc--
Confidence 46889998888877765321000 000133467889999999999999999986 33222 2233222111
Q ss_pred HHHHHHHHHhcCCCCCCCcHHH-HHHHHHhhcCCceEEEEEeCCCCCC----------hh----hhhhhccccc--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNS-LQVKLKDGLSRKKFLLVLDDMWNDN----------YG----DWTSLRLPFV--AGAS 318 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~k~~LlVlDdv~~~~----------~~----~~~~l~~~~~--~~~~ 318 (1388)
. -..+... +...+...-...+++|++|+++... .. ....+...+. ....
T Consensus 254 ------------k--~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~ 319 (437)
T 4b4t_L 254 ------------K--YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLG 319 (437)
T ss_dssp ------------S--SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTT
T ss_pred ------------c--cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCC
Confidence 0 0011111 1122222223578999999996421 00 0112222221 1234
Q ss_pred CcEEEEEcCChhHHhh--cC---CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 319 GSKIIVTTRNQSVASM--MG---SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 319 gs~iivTtR~~~v~~~--~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
+..||.||...+.... .. -+..+.+..-+.++-.++|..+.-+- ......++ ..+++.+.|.-
T Consensus 320 ~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~-~~~~d~dl----~~lA~~t~G~s 387 (437)
T 4b4t_L 320 QTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKV-KKTGEFDF----EAAVKMSDGFN 387 (437)
T ss_dssp SSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTS-CBCSCCCH----HHHHHTCCSCC
T ss_pred CeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCC-CCCcccCH----HHHHHhCCCCC
Confidence 5678888876543321 12 23468888888888888887665221 11122223 55677777753
No 223
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.96 E-value=0.046 Score=63.05 Aligned_cols=82 Identities=10% Similarity=0.103 Sum_probs=42.7
Q ss_pred ccccCCCCccEEEEcCCCchhhhhhhHhhhhhhcCCCCcceEEEecCCCCcccccccccCCCccceEEEccCCCCccChh
Q 045318 963 GLLQDISSLHKLEIGNCPELLSLVAAEEADQQQQGLPCRLHYLELRSCPSLVKLPQTLLSLSSLRQLKISECHSMKSLPE 1042 (1388)
Q Consensus 963 ~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~p~~~~~l~~L~~L~l~~~~~l~~~p~ 1042 (1388)
.++....+|+.+.|.. .++.+.... |.++++|+.+.|..+ ....-..+|.++ +|+.+.+..+ ++.+..
T Consensus 40 ~~~~~~~~i~~v~ip~--~vt~Ig~~a------F~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~--l~~I~~ 107 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS--GITSIGEAN------FNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER--VKKFGD 107 (379)
T ss_dssp TTGGGGGGCSEEEECT--TEEEECTTT------TTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT--CCEECT
T ss_pred cccccccCCEEEEeCC--CccChHHHH------hhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce--eeEecc
Confidence 3455566777777753 455555544 666777777777543 222223445544 5665555432 344443
Q ss_pred hhccCCCCCccceeec
Q 045318 1043 ALMHNDNAPLESLNVV 1058 (1388)
Q Consensus 1043 ~~~~~~l~~L~~L~l~ 1058 (1388)
..+. .++|+++.+.
T Consensus 108 ~aF~--~~~L~~i~lp 121 (379)
T 4h09_A 108 YVFQ--GTDLDDFEFP 121 (379)
T ss_dssp TTTT--TCCCSEEECC
T ss_pred ceec--cCCcccccCC
Confidence 3322 2345555543
No 224
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.94 E-value=0.0035 Score=70.80 Aligned_cols=175 Identities=20% Similarity=0.177 Sum_probs=91.5
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|.+..++.+...+......+ .....+.++|+.|+||||||+.++... ...| .. .+....
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l--~~~~----~~-~sg~~~------- 87 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMRG---EVLDHVLLAGPPGLGKTTLAHIIASEL--QTNI----HV-TSGPVL------- 87 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHHT---CCCCCEEEESSTTSSHHHHHHHHHHHH--TCCE----EE-EETTTC-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhcC---CCCCeEEEECCCCCcHHHHHHHHHHHh--CCCE----EE-EechHh-------
Confidence 357888877777666554310000 233568999999999999999999852 2111 11 111100
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC--------C----------CCcEE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG--------A----------SGSKI 322 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~--------~----------~gs~i 322 (1388)
....++...+ ..+ .++.++++|++..-.....+.+...+... + ....+
T Consensus 88 ------------~~~~~l~~~~-~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~l 153 (334)
T 1in4_A 88 ------------VKQGDMAAIL-TSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTL 153 (334)
T ss_dssp ------------CSHHHHHHHH-HHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEE
T ss_pred ------------cCHHHHHHHH-HHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEE
Confidence 0011111111 112 23447788988554332333332111111 0 01122
Q ss_pred E-EEcCChhHHhhc--CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 045318 323 I-VTTRNQSVASMM--GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLPLAAK 390 (1388)
Q Consensus 323 i-vTtR~~~v~~~~--~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~ 390 (1388)
+ .|++...+.... .....+.+++.+.++-.+++.+.+-... .. .-.+.+..|+++++|.|-.+.
T Consensus 154 i~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~-~~---~~~~~~~~ia~~~~G~~R~a~ 220 (334)
T 1in4_A 154 VGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMD-VE---IEDAAAEMIAKRSRGTPRIAI 220 (334)
T ss_dssp EEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTT-CC---BCHHHHHHHHHTSTTCHHHHH
T ss_pred EEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcC-CC---cCHHHHHHHHHhcCCChHHHH
Confidence 2 344433322211 1123578999999999999988752211 11 123668899999999996543
No 225
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.01 Score=67.74 Aligned_cols=181 Identities=15% Similarity=0.112 Sum_probs=95.3
Q ss_pred CccccchhhHHHHHHHHhc----CCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|-++.+++|.+.+.- ++. ....-...+-|.++|++|+|||++|+++++. ....| +.|..+.-.+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e--~~~~f---i~vs~s~L~s-- 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANR--TDATF---IRVIGSELVQ-- 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhc--cCCCe---EEEEhHHhhc--
Confidence 4688999888888775421 100 0000034467889999999999999999986 33333 2233221110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh------h--------hhhhhcccccC--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY------G--------DWTSLRLPFVA--GASG 319 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~--------~~~~l~~~~~~--~~~g 319 (1388)
. .-......+...+...-...+++|++|+++.... . ....+...+.. ...+
T Consensus 282 ------------k-~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ 348 (467)
T 4b4t_H 282 ------------K-YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGN 348 (467)
T ss_dssp ------------C-SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTT
T ss_pred ------------c-cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCc
Confidence 0 0001111122222222235689999999964210 0 01111111211 2234
Q ss_pred cEEEEEcCChhHHh-h-c---CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 320 SKIIVTTRNQSVAS-M-M---GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 320 s~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
..||.||...+... . . .-+..+.+...+.++-.++|..+.- .......-++ ..|++.+.|.-
T Consensus 349 ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~-~~~l~~dvdl----~~LA~~T~GfS 415 (467)
T 4b4t_H 349 IKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSK-SMSVERGIRW----ELISRLCPNST 415 (467)
T ss_dssp EEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHT-TSCBCSSCCH----HHHHHHCCSCC
T ss_pred EEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhc-CCCCCCCCCH----HHHHHHCCCCC
Confidence 56677776543221 1 1 2346789998899888899987652 2222222233 55777887753
No 226
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.86 E-value=0.00086 Score=68.37 Aligned_cols=92 Identities=17% Similarity=0.132 Sum_probs=72.3
Q ss_pred HHHHhhccCceeeEEEeCCc-ccc-----ccccccccCcccceeeccCccccc-----cccchhcccccceeecCCCcch
Q 045318 556 SVVHMLLKLQCLRVLCLREY-NIC-----KISNTIGDLKHLRHLDLSETLIET-----LPESVNTLYNLHTLLLESCSRL 624 (1388)
Q Consensus 556 ~~~~~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~L~~~~~~ 624 (1388)
.+...+...+.|++|+|++| .+. .+...+....+|++|+|++|.|.. +...+...++|++|+|++|...
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34555678899999999999 886 345667788999999999998863 5566777789999999998643
Q ss_pred h----hcchhhcccCCCCeeec--CCCCC
Q 045318 625 K----KLCADMGNLIKLRHLNN--YNVPL 647 (1388)
Q Consensus 625 ~----~lp~~i~~L~~L~~L~l--~~~~~ 647 (1388)
. .+...+...++|++|++ ++|.+
T Consensus 107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i 135 (185)
T 1io0_A 107 GSGILALVEALQSNTSLIELRIDNQSQPL 135 (185)
T ss_dssp HHHHHHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred HHHHHHHHHHHHhCCCceEEEecCCCCCC
Confidence 3 25666778889999999 77763
No 227
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.86 E-value=0.014 Score=63.13 Aligned_cols=184 Identities=15% Similarity=0.117 Sum_probs=90.4
Q ss_pred CccccchhhHHHHHHHH---hcCCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELL---LNDDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l---~~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.+..++++.+.+ ..... ........+-|.|+|+.|+||||+|+.+++.. ...| +.+..+.-.+
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~--~~~~---~~i~~~~~~~--- 83 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA--KVPF---FTISGSDFVE--- 83 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH--TCCE---EEECSCSSTT---
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc--CCCE---EEEeHHHHHH---
Confidence 46899998887766543 22110 00000112347899999999999999999752 2222 2222211100
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhhhhhcccccC--CCCCc
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY--------------GDWTSLRLPFVA--GASGS 320 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~~~~--~~~gs 320 (1388)
.. .......+...+.........++++|+++.-.. .....+...+.. ...+.
T Consensus 84 -------~~-----~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 151 (257)
T 1lv7_A 84 -------MF-----VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGI 151 (257)
T ss_dssp -------SC-----CCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCE
T ss_pred -------Hh-----hhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCE
Confidence 00 011122233333333345678999999832100 011112111111 12455
Q ss_pred EEEEEcCChhHH-hhc-C---CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCC-ChHHH
Q 045318 321 KIIVTTRNQSVA-SMM-G---SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNG-LPLAA 389 (1388)
Q Consensus 321 ~iivTtR~~~v~-~~~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-~Plai 389 (1388)
.||.||...+.. ... . -...+.+...+.++-.+++..+.-. ........ ...++..+.| .+--+
T Consensus 152 ~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~-~~l~~~~~----~~~la~~~~G~~~~dl 221 (257)
T 1lv7_A 152 IVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR-VPLAPDID----AAIIARGTPGFSGADL 221 (257)
T ss_dssp EEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCCHHHH
T ss_pred EEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc-CCCCcccc----HHHHHHHcCCCCHHHH
Confidence 677777654321 111 1 2246788888888877777765421 11111111 2446667777 55333
No 228
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.81 E-value=0.0017 Score=82.49 Aligned_cols=157 Identities=14% Similarity=0.138 Sum_probs=86.3
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK 259 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~ 259 (1388)
..++|.+..++.+...+....... ........+.++|++|+|||++|+++++.. ...-...+.+.++.-.+.
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l--~~~~~~~i~i~~s~~~~~----- 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI--FGDEESMIRIDMSEYMEK----- 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH--HSCTTCEEEEEGGGGCSS-----
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh--cCCCcceEEEechhcccc-----
Confidence 468999999998888876432111 001233478999999999999999999752 111122344444322110
Q ss_pred HHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCC-----------CCCcEEEEEcCC
Q 045318 260 AILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAG-----------ASGSKIIVTTRN 328 (1388)
Q Consensus 260 ~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~-----------~~gs~iivTtR~ 328 (1388)
... ....+...+++ ....+|+||++..........+...+..+ ....+||+||..
T Consensus 564 ---------~~~--~~~~l~~~~~~---~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~ 629 (758)
T 3pxi_A 564 ---------HST--SGGQLTEKVRR---KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNV 629 (758)
T ss_dssp ---------CCC--C---CHHHHHH---CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESS
T ss_pred ---------ccc--ccchhhHHHHh---CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCC
Confidence 000 01111112222 23348999999776655555555444331 235688999873
Q ss_pred -----hh----HHhhc------CCCceEeCCCCChhhHHHHHHHc
Q 045318 329 -----QS----VASMM------GSVSAYELKKLTDDDCRLVFTQH 358 (1388)
Q Consensus 329 -----~~----v~~~~------~~~~~~~l~~L~~~~~~~lf~~~ 358 (1388)
.. +...+ .-..++.+.++++++-.+++...
T Consensus 630 ~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~ 674 (758)
T 3pxi_A 630 GASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLM 674 (758)
T ss_dssp STTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHH
Confidence 11 11111 11247888888888877776654
No 229
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.75 E-value=0.00074 Score=73.95 Aligned_cols=50 Identities=30% Similarity=0.390 Sum_probs=34.5
Q ss_pred CccccchhhHHHHHHHHhc---CC----CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLN---DD----LNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~---~~----~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..++++.+.+.. +. ... ...+-|.|+|++|+|||++|+.+++.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA---KIPKGVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC---CCCSCCCCBCSSCSSHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC---CCCceEEEECCCCCcHHHHHHHHHHH
Confidence 4688998888877765531 00 000 11123679999999999999999985
No 230
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.71 E-value=0.0047 Score=73.08 Aligned_cols=94 Identities=10% Similarity=0.025 Sum_probs=57.2
Q ss_pred EEEEEeCCCCCChhhhhhhcccccCCCCCcEEE-EE---------cC----C----hhHHhhcCCCceEeCCCCChhhHH
Q 045318 291 FLLVLDDMWNDNYGDWTSLRLPFVAGASGSKII-VT---------TR----N----QSVASMMGSVSAYELKKLTDDDCR 352 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~ii-vT---------tR----~----~~v~~~~~~~~~~~l~~L~~~~~~ 352 (1388)
-++++|++..-+...+..+...+...... -+| .| |. . +.+.+.+ ..+.+.+++.++..
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 38999999776666677776666544333 344 44 32 1 1122222 45799999999999
Q ss_pred HHHHHcccCCCCCCCCchHHHHHHHHHHHc-CCChHHHHHH
Q 045318 353 LVFTQHSLGTKDFSNHQHLKEIGEEILKKC-NGLPLAAKTL 392 (1388)
Q Consensus 353 ~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c-~g~Plai~~~ 392 (1388)
+.+...+-..+ ..-. .+....|++.+ +|.|-.+..+
T Consensus 373 ~iL~~~~~~~~-~~~~---~~~~~~i~~~a~~g~~r~a~~l 409 (456)
T 2c9o_A 373 QIIKIRAQTEG-INIS---EEALNHLGEIGTKTTLRYSVQL 409 (456)
T ss_dssp HHHHHHHHHHT-CCBC---HHHHHHHHHHHHHSCHHHHHHT
T ss_pred HHHHHHHHHhC-CCCC---HHHHHHHHHHccCCCHHHHHHH
Confidence 99987652111 1111 34567788888 7877654433
No 231
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.67 E-value=0.0088 Score=69.95 Aligned_cols=178 Identities=15% Similarity=0.158 Sum_probs=94.2
Q ss_pred CccccchhhHHHHHHHHh---cCC----CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 181 AEVHGRDDDKKAIVELLL---NDD----LNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~---~~~----~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
..++|.++.++++.+.+. ... .+. ...+-|.|+|++|+||||||++++... ...| +.++.+.-..
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~---~~p~gvLL~GppGtGKT~Laraia~~~--~~~f---~~is~~~~~~ 87 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGA---RMPKGILLVGPPGTGKTLLARAVAGEA--NVPF---FHISGSDFVE 87 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTC---CCCSEEEEECCTTSSHHHHHHHHHHHH--TCCE---EEEEGGGTTT
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCC---CCCCeEEEECCCCCCHHHHHHHHHHHc--CCCe---eeCCHHHHHH
Confidence 468999988777666542 110 000 112347899999999999999999852 2222 2233222111
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh--------------hhhhhhcccccC--CC
Q 045318 254 AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY--------------GDWTSLRLPFVA--GA 317 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--------------~~~~~l~~~~~~--~~ 317 (1388)
. + ...........+.+.......+|++|+++.-.. .....+...+.. ..
T Consensus 88 ~----------~-----~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~ 152 (476)
T 2ce7_A 88 L----------F-----VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSK 152 (476)
T ss_dssp C----------C-----TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGG
T ss_pred H----------H-----hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCC
Confidence 0 0 000111222333444446788999999954211 012222222211 12
Q ss_pred CCcEEEEEcCChhHHh-h-cC---CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 318 SGSKIIVTTRNQSVAS-M-MG---SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~-~-~~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
.+..||.||...+... . .. -...+.+...+.++-.+++..++-. .......+ ...+++.+.|..
T Consensus 153 ~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~-~~l~~~v~----l~~la~~t~G~s 221 (476)
T 2ce7_A 153 EGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRN-KPLAEDVN----LEIIAKRTPGFV 221 (476)
T ss_dssp GTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHh-CCCcchhh----HHHHHHhcCCCc
Confidence 4567788887765432 1 22 2237888888888877887766522 11111112 244777788866
No 232
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.66 E-value=0.0071 Score=68.38 Aligned_cols=179 Identities=16% Similarity=0.118 Sum_probs=93.9
Q ss_pred CccccchhhHHHHHHHHhc----CCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|-++.+++|.+.+.- ++. ....-...+-|.++|++|+|||.+|+++++. ....| +.+..+.-.+
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e--~~~~f---i~v~~s~l~s-- 254 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQ--TSATF---LRIVGSELIQ-- 254 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHH--HTCEE---EEEESGGGCC--
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHH--hCCCE---EEEEHHHhhh--
Confidence 4678999888888775532 110 0000133466889999999999999999986 33333 2222221110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHH-HhhcCCceEEEEEeCCCCCCh----------hh----hhhhccccc--CCCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKL-KDGLSRKKFLLVLDDMWNDNY----------GD----WTSLRLPFV--AGAS 318 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~~----------~~----~~~l~~~~~--~~~~ 318 (1388)
. -..+.+.....+ ...-....++|++|+++.... .. ...+...+. ....
T Consensus 255 ------------k--~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~ 320 (437)
T 4b4t_I 255 ------------K--YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRG 320 (437)
T ss_dssp ------------S--SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSS
T ss_pred ------------c--cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCC
Confidence 0 011111122222 222235679999999864210 01 111221111 1234
Q ss_pred CcEEEEEcCChhHHhh-c-C---CCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 319 GSKIIVTTRNQSVASM-M-G---SVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 319 gs~iivTtR~~~v~~~-~-~---~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
+..||.||...+.... + . -+..+.+..-+.++-.++|..+.- ......+.++ ..+++.+.|.
T Consensus 321 ~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~-~~~l~~dvdl----~~LA~~T~Gf 387 (437)
T 4b4t_I 321 DVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTS-KMNLSEDVNL----ETLVTTKDDL 387 (437)
T ss_dssp SEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHT-TSCBCSCCCH----HHHHHHCCSC
T ss_pred CEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhc-CCCCCCcCCH----HHHHHhCCCC
Confidence 5567778866544322 1 1 124688888888888888887652 2222222233 4566777775
No 233
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.59 E-value=0.0032 Score=72.25 Aligned_cols=179 Identities=14% Similarity=0.105 Sum_probs=93.0
Q ss_pred CccccchhhHHHHHHHHhc----CCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|-++.+++|.+.+.. ++. ....-...+-|.++|++|+|||.+|+++++. ....| +.+..+.-.+
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e--~~~~f---~~v~~s~l~~-- 253 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQ--TNATF---LKLAAPQLVQ-- 253 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHH--HTCEE---EEEEGGGGCS--
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHH--hCCCE---EEEehhhhhh--
Confidence 4688999998888775432 110 0000133467889999999999999999986 23222 2232221110
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCCceEEEEEeCCCCC------Ch----hh----hhhhcccccC--CCC
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKD-GLSRKKFLLVLDDMWND------NY----GD----WTSLRLPFVA--GAS 318 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~------~~----~~----~~~l~~~~~~--~~~ 318 (1388)
. -..+.+.....+.. .-...+++|++|+++.. .. .. ...+...+.. ...
T Consensus 254 ------------~--~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~ 319 (434)
T 4b4t_M 254 ------------M--YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDD 319 (434)
T ss_dssp ------------S--CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSC
T ss_pred ------------c--ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCC
Confidence 0 00111111112211 22245789999998431 00 01 1112222221 123
Q ss_pred CcEEEEEcCChhHHhh-c----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCC
Q 045318 319 GSKIIVTTRNQSVASM-M----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGL 385 (1388)
Q Consensus 319 gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~ 385 (1388)
+-.||.||...+.... + .-+..+.+..-+.++-.++|..+.-+ ......-++ ..|++.+.|.
T Consensus 320 ~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~-~~~~~dvdl----~~lA~~t~G~ 386 (434)
T 4b4t_M 320 RVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK-MTTDDDINW----QELARSTDEF 386 (434)
T ss_dssp SSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH-SCBCSCCCH----HHHHHHCSSC
T ss_pred CEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC-CCCCCcCCH----HHHHHhCCCC
Confidence 4567778866543321 1 12356889888888888888765421 111122222 5567777774
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.53 E-value=0.0078 Score=66.33 Aligned_cols=26 Identities=27% Similarity=0.399 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+.+.++|++|+|||+||+++++.
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~ 59 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRK 59 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34567889999999999999999986
No 235
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.48 E-value=0.012 Score=70.80 Aligned_cols=162 Identities=17% Similarity=0.157 Sum_probs=78.1
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|.+.-++.+.+.+.-..... .....++.++|++|+||||+|+.++... ...| .-+.++...+...+...
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~--~~~g~~vll~Gp~GtGKTtlar~ia~~l--~~~~---~~i~~~~~~~~~~~~g~ 153 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTK--SLKGPILCLAGPPGVGKTSLAKSIAKSL--GRKF---VRISLGGVRDESEIRGH 153 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSS--SCCSCEEEEESSSSSSHHHHHHHHHHHH--TCEE---EEECCCC----------
T ss_pred HHhccHHHHHHHHHHHHHHHHhcc--cCCCCEEEEECCCCCCHHHHHHHHHHhc--CCCe---EEEEecccchhhhhhhH
Confidence 457888887777765443211000 0234689999999999999999999752 2222 12222222221111111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChh----hhhhhcccccCC---------------CCCcE
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYG----DWTSLRLPFVAG---------------ASGSK 321 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~----~~~~l~~~~~~~---------------~~gs~ 321 (1388)
....++. ........+... ....-++++|+++..... ....+...+... .....
T Consensus 154 ~~~~ig~------~~~~~~~~~~~a-~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 154 RRTYVGA------MPGRIIQGMKKA-GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp ----------------CHHHHHHTT-CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred HHHHhcc------CchHHHHHHHHh-hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 1111110 011112222222 223348889999664322 112333222111 03456
Q ss_pred EEEEcCChh-----HHhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 322 IIVTTRNQS-----VASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 322 iivTtR~~~-----v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
||.||.... ..+.+ .++.+.+++.++-.+++..+.
T Consensus 227 iI~ttN~~~~l~~aL~~R~---~vi~~~~~~~~e~~~Il~~~l 266 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRM---EIINIAGYTEIEKLEIVKDHL 266 (543)
T ss_dssp EEEECSSTTTSCHHHHHHE---EEEECCCCCHHHHHHHHHHTH
T ss_pred EEeccCccccCCHHHHhhc---ceeeeCCCCHHHHHHHHHHHH
Confidence 777776532 22222 467888888888888777653
No 236
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.45 E-value=0.0049 Score=69.77 Aligned_cols=149 Identities=11% Similarity=0.055 Sum_probs=83.7
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
..++|++..++.+...+... .-|.++|++|+|||++|+.+.+. ....| ..+.........++...
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----------~~vll~G~pGtGKT~la~~la~~--~~~~~---~~i~~~~~~~~~~l~g~ 91 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----------GHILLEGVPGLAKTLSVNTLAKT--MDLDF---HRIQFTPDLLPSDLIGT 91 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----------CCEEEESCCCHHHHHHHHHHHHH--TTCCE---EEEECCTTCCHHHHHEE
T ss_pred cceeCcHHHHHHHHHHHHcC----------CeEEEECCCCCcHHHHHHHHHHH--hCCCe---EEEecCCCCChhhcCCc
Confidence 35889999999888887653 24789999999999999999874 22222 22333333333332111
Q ss_pred HHHHhcCCCCCCCcHHHHHHHHHhhcCC--ceEEEEEeCCCCCChhhhhhhcccccC-----------CCCCcEEEEEcC
Q 045318 261 ILRSICMHTDADDDLNSLQVKLKDGLSR--KKFLLVLDDMWNDNYGDWTSLRLPFVA-----------GASGSKIIVTTR 327 (1388)
Q Consensus 261 i~~~l~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~l~~~~~~-----------~~~gs~iivTtR 327 (1388)
...... .... ..-.+ ...++++|++..........+...+.. ......||.|+.
T Consensus 92 ----~~~~~~-~~~~--------~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~n 158 (331)
T 2r44_A 92 ----MIYNQH-KGNF--------EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQN 158 (331)
T ss_dssp ----EEEETT-TTEE--------EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEEC
T ss_pred ----eeecCC-CCce--------EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecC
Confidence 100000 0000 00001 125899999977654444443332221 123455666665
Q ss_pred Chh----------HHhhcCCCceEeCCCCChhhHHHHHHHcc
Q 045318 328 NQS----------VASMMGSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 328 ~~~----------v~~~~~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
... +...+ ...+.+...+.++-.+++...+
T Consensus 159 p~~~~~~~~l~~~l~~Rf--~~~i~i~~p~~~~~~~il~~~~ 198 (331)
T 2r44_A 159 PVEQEGTYPLPEAQVDRF--MMKIHLTYLDKESELEVMRRVS 198 (331)
T ss_dssp TTCCSCCCCCCHHHHTTS--SEEEECCCCCHHHHHHHHHHHH
T ss_pred CCcccCcccCCHHHHhhe--eEEEEcCCCCHHHHHHHHHhcc
Confidence 221 11211 2258899999999988888775
No 237
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.44 E-value=0.0014 Score=71.14 Aligned_cols=68 Identities=16% Similarity=0.285 Sum_probs=44.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEe--CCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCV--SDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~--s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
.+++.|+|++|+||||||.+++.. .-..++|+++ .+..+. ...+.++....+.+.+.
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~-----~G~~VlyIs~~~eE~v~~----------------~~~~le~~l~~i~~~l~ 181 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA-----LGGKDKYATVRFGEPLSG----------------YNTDFNVFVDDIARAML 181 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH-----HHTTSCCEEEEBSCSSTT----------------CBCCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh-----CCCCEEEEEecchhhhhh----------------hhcCHHHHHHHHHHHHh
Confidence 367789999999999999999874 1123456766 333110 01345555555556665
Q ss_pred CceEEEEEeCCC
Q 045318 288 RKKFLLVLDDMW 299 (1388)
Q Consensus 288 ~k~~LlVlDdv~ 299 (1388)
..+ +||+|++.
T Consensus 182 ~~~-LLVIDsI~ 192 (331)
T 2vhj_A 182 QHR-VIVIDSLK 192 (331)
T ss_dssp HCS-EEEEECCT
T ss_pred hCC-EEEEeccc
Confidence 555 99999993
No 238
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.44 E-value=0.017 Score=71.68 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=97.0
Q ss_pred CccccchhhHHHHHHHHh----cCCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLL----NDDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~----~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..+.|.++.+++|.+++. .++. ........+-|.++|++|+|||+||++|++. ...+| +.|..+
T Consensus 204 ~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~e--lg~~~---~~v~~~------ 272 (806)
T 3cf2_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTT--TTCEE---EEEEHH------
T ss_pred hhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHH--hCCeE---EEEEhH------
Confidence 457888888887776542 2211 0111134567889999999999999999986 33333 233221
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh------hh-----hhhhcccccC--CCCCcEE
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY------GD-----WTSLRLPFVA--GASGSKI 322 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~-----~~~l~~~~~~--~~~gs~i 322 (1388)
++ ... ........+...+....+..+.+|++|+++.... .+ ...+...+.. ...+..|
T Consensus 273 ~l----~sk-----~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~V 343 (806)
T 3cf2_A 273 EI----MSK-----LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp HH----HSS-----CTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEE
T ss_pred Hh----hcc-----cchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEE
Confidence 11 110 0111122233333444456789999999954210 01 1112211111 1234456
Q ss_pred EEEcCChhHH-hhc----CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 323 IVTTRNQSVA-SMM----GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 323 ivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
|.||...+.. ..+ .-...+++...+.++-.+++..+.-+ .....+.+ ...|++++.|.-
T Consensus 344 IaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~-~~~~~dvd----l~~lA~~T~Gfs 407 (806)
T 3cf2_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKN-MKLADDVD----LEQVANETHGHV 407 (806)
T ss_dssp EEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSS-SEECTTCC----HHHHHHHCCSCC
T ss_pred EEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcC-CCCCcccC----HHHHHHhcCCCC
Confidence 6676554322 222 12357899999999989999876522 11122222 355777887754
No 239
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.33 E-value=0.0023 Score=70.99 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=29.1
Q ss_pred hhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 187 DDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 187 ~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++.+.+++..... .....+.|+|+.|+|||+||+++++.
T Consensus 134 ~~~~~~~~~~i~~~~~-----~~~~~lll~G~~GtGKT~La~aia~~ 175 (308)
T 2qgz_A 134 MEAFSAILDFVEQYPS-----AEQKGLYLYGDMGIGKSYLLAAMAHE 175 (308)
T ss_dssp HHHHHHHHHHHHHCSC-----SSCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccc-----cCCceEEEECCCCCCHHHHHHHHHHH
Confidence 3344455566654221 11357889999999999999999986
No 240
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.15 E-value=0.022 Score=67.18 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=35.8
Q ss_pred ccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|++..++.+...+..+ .-|.++|++|+|||+||+.+++.
T Consensus 23 ~ivGq~~~i~~l~~al~~~----------~~VLL~GpPGtGKT~LAraLa~~ 64 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG----------ESVFLLGPPGIAKSLIARRLKFA 64 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT----------CEEEEECCSSSSHHHHHHHGGGG
T ss_pred hhHHHHHHHHHHHHHHhcC----------CeeEeecCchHHHHHHHHHHHHH
Confidence 4789999998888887653 25789999999999999999985
No 241
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.07 E-value=0.022 Score=59.87 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcC-----------CC-CCCCcHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICM-----------HT-DADDDLN 276 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~-----------~~-~~~~~~~ 276 (1388)
.-.++.|+|.+|+||||+|..+.. . .-..++|++....++..++.. +.+..+. .. ....+..
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~-~----~~~~v~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGL-L----SGKKVAYVDTEGGFSPERLVQ-MAETRGLNPEEALSRFILFTPSDFKEQR 92 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHH-H----HCSEEEEEESSCCCCHHHHHH-HHHTTTCCHHHHHHHEEEECCTTTSHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-H----cCCcEEEEECCCCCCHHHHHH-HHHhcCCChHHHhhcEEEEecCCHHHHH
Confidence 346899999999999999999987 1 124677887776556655443 3332221 11 1122223
Q ss_pred HHHHHHHhhcCCceEEEEEeCCC
Q 045318 277 SLQVKLKDGLSRKKFLLVLDDMW 299 (1388)
Q Consensus 277 ~~~~~l~~~l~~k~~LlVlDdv~ 299 (1388)
+....++..+..+.-+||+|.+-
T Consensus 93 ~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 93 RVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhhcCCCEEEEcCcH
Confidence 34444555554456789999883
No 242
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.94 E-value=0.0088 Score=76.18 Aligned_cols=53 Identities=19% Similarity=0.186 Sum_probs=37.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..++.+...+.....+. ........+.++|++|+|||++|+.+++.
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~ 511 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKA 511 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHH
Confidence 458899999888887765321100 00123457899999999999999999975
No 243
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.84 E-value=0.013 Score=75.30 Aligned_cols=137 Identities=15% Similarity=0.186 Sum_probs=71.0
Q ss_pred ccccchhhHHHHHHHHhcCCCC-CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHH
Q 045318 182 EVHGRDDDKKAIVELLLNDDLN-ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKA 260 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~~~~~-~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~ 260 (1388)
.++|.+..++.+...+.....+ .........+.|+|+.|+|||++|+.+++... ..-...+.+.++.-.... .
T Consensus 559 ~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~--~~~~~~i~i~~~~~~~~~-~--- 632 (854)
T 1qvr_A 559 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF--DTEEAMIRIDMTEYMEKH-A--- 632 (854)
T ss_dssp HSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH--SSGGGEEEECTTTCCSSG-G---
T ss_pred ccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc--CCCCcEEEEechhccchh-H---
Confidence 5799999998888877542110 00012346789999999999999999997521 101122334333322110 0
Q ss_pred HHHHhcCCCC---CCCcHHHHHHHHHhhcCCceEEEEEeCCCCCChhhhhhhcccccCCC-----------CCcEEEEEc
Q 045318 261 ILRSICMHTD---ADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGA-----------SGSKIIVTT 326 (1388)
Q Consensus 261 i~~~l~~~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~-----------~gs~iivTt 326 (1388)
...+.+... .......+...+++ ...-+|+||++..........+...+..+. .+..||+||
T Consensus 633 -~s~l~g~~~~~~G~~~~g~l~~~~~~---~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ts 708 (854)
T 1qvr_A 633 -VSRLIGAPPGYVGYEEGGQLTEAVRR---RPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTS 708 (854)
T ss_dssp -GGGC--------------CHHHHHHH---CSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEEEC
T ss_pred -HHHHcCCCCCCcCccccchHHHHHHh---CCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEEec
Confidence 011110000 00001112222222 234589999997766555566555554321 245588888
Q ss_pred CC
Q 045318 327 RN 328 (1388)
Q Consensus 327 R~ 328 (1388)
..
T Consensus 709 n~ 710 (854)
T 1qvr_A 709 NL 710 (854)
T ss_dssp CT
T ss_pred Cc
Confidence 64
No 244
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.62 E-value=0.13 Score=60.48 Aligned_cols=177 Identities=14% Similarity=0.141 Sum_probs=89.4
Q ss_pred CccccchhhHHHHHHHHh---cCCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHH
Q 045318 181 AEVHGRDDDKKAIVELLL---NDDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~---~~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~ 256 (1388)
..++|.++.+.++.+... .... ....-.-.+-|.|+|++|+||||||++++... ... .+.+..+.-..
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~--~~~---~i~i~g~~~~~--- 102 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA--RVP---FITASGSDFVE--- 102 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT--TCC---EEEEEGGGGTS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh--CCC---EEEEehhHHHH---
Confidence 468999887776665432 2110 00000111238899999999999999999853 222 23333221100
Q ss_pred HHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC----CceEEEEEeCCCCCC----------hhhh----hhhcccccCC--
Q 045318 257 VTKAILRSICMHTDADDDLNSLQVKLKDGLS----RKKFLLVLDDMWNDN----------YGDW----TSLRLPFVAG-- 316 (1388)
Q Consensus 257 ~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~----~k~~LlVlDdv~~~~----------~~~~----~~l~~~~~~~-- 316 (1388)
. ........++..++ ....++++|+++... ..++ ..+...+..+
T Consensus 103 -----------~-----~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~ 166 (499)
T 2dhr_A 103 -----------M-----FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK 166 (499)
T ss_dssp -----------S-----CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS
T ss_pred -----------h-----hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc
Confidence 0 00111122222222 235799999995321 1111 2222222221
Q ss_pred CCCcEEEEEcCChhHHhh--c---CCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 317 ASGSKIIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 317 ~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
..+..|+.||...++... . .-...+.+...+.++-.+++..++-+ ........ ...|++.+.|..
T Consensus 167 ~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~-~~l~~dv~----l~~lA~~t~G~~ 236 (499)
T 2dhr_A 167 DTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 236 (499)
T ss_dssp SCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS-SCCCCSST----THHHHTTSCSCC
T ss_pred CccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHhc-CCCChHHH----HHHHHHhcCCCC
Confidence 234556667776655321 1 12347888888888888888776521 11111111 244666666654
No 245
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.54 E-value=0.063 Score=61.67 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.++|++|+|||++|+.+++.
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~ 95 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKH 95 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 45789999999999999999975
No 246
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=95.53 E-value=0.054 Score=58.73 Aligned_cols=126 Identities=11% Similarity=-0.004 Sum_probs=66.5
Q ss_pred EEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhh-cCCceE
Q 045318 213 IPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDG-LSRKKF 291 (1388)
Q Consensus 213 v~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~-l~~k~~ 291 (1388)
+.++|++|+||||||+.++..... ..+++....-.+. ...+.......+.+. -.....
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~----------------~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNM----------------YVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSS----------------TTHHHHHHHHHHHHHHHHTCSE
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhh----------------hhhHHHHHHHHHHHHHHhcCCC
Confidence 899999999999999999985221 1233332211110 000011111112221 124568
Q ss_pred EEEEeCCCCCCh-----------hhhhhhcccccCC--CCCcEEEEEcCChhHHhh--c---CCCceEeCCCCChhhHHH
Q 045318 292 LLVLDDMWNDNY-----------GDWTSLRLPFVAG--ASGSKIIVTTRNQSVASM--M---GSVSAYELKKLTDDDCRL 353 (1388)
Q Consensus 292 LlVlDdv~~~~~-----------~~~~~l~~~~~~~--~~gs~iivTtR~~~v~~~--~---~~~~~~~l~~L~~~~~~~ 353 (1388)
++++|+++.... .....+...+..+ ....-++.+|...++... . .-...+.+...+.++-.+
T Consensus 106 i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp EEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred eEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 999999954210 0011122222211 234456667776654432 1 233567888888888888
Q ss_pred HHHHcc
Q 045318 354 VFTQHS 359 (1388)
Q Consensus 354 lf~~~~ 359 (1388)
++....
T Consensus 186 il~~~~ 191 (274)
T 2x8a_A 186 ILKTIT 191 (274)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 887764
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.49 E-value=0.043 Score=69.42 Aligned_cols=159 Identities=15% Similarity=0.120 Sum_probs=83.3
Q ss_pred CccccchhhHHHHHHHHhc----CCC-CCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHH
Q 045318 181 AEVHGRDDDKKAIVELLLN----DDL-NADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAI 255 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~----~~~-~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~ 255 (1388)
..++|.+..++++.+++.. +.. ..........|.|+|++|+||||||+.++.. ....| +.+..+
T Consensus 204 ~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~--l~~~~---i~v~~~------ 272 (806)
T 1ypw_A 204 DDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANE--TGAFF---FLINGP------ 272 (806)
T ss_dssp GGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHT--TTCEE---EEEEHH------
T ss_pred HHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHH--cCCcE---EEEEch------
Confidence 4689999999988887753 100 0000123356899999999999999999875 22222 222211
Q ss_pred HHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh------hh-----hhhhcccccC--CCCCcEE
Q 045318 256 KVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY------GD-----WTSLRLPFVA--GASGSKI 322 (1388)
Q Consensus 256 ~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~------~~-----~~~l~~~~~~--~~~gs~i 322 (1388)
+ +.... .......+...+.........++++|++..... .+ ...+...+.. ...+..|
T Consensus 273 ~--------l~~~~-~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~v 343 (806)
T 1ypw_A 273 E--------IMSKL-AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIV 343 (806)
T ss_dssp H--------HSSSS-TTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEE
T ss_pred H--------hhhhh-hhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEE
Confidence 1 11000 001111122223333334568999999943210 00 1112211111 1234466
Q ss_pred EEEcCChhHH-hhc----CCCceEeCCCCChhhHHHHHHHcc
Q 045318 323 IVTTRNQSVA-SMM----GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 323 ivTtR~~~v~-~~~----~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
|.||....-. ..+ .-...+.+...+.++-.+++...+
T Consensus 344 I~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~ 385 (806)
T 1ypw_A 344 MAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (806)
T ss_dssp EEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTT
T ss_pred ecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHH
Confidence 6666654222 111 112457888888888888888765
No 248
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.32 E-value=0.031 Score=62.48 Aligned_cols=84 Identities=17% Similarity=0.138 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|+|++|+||||||.+++..... .=..++|++....++.. .+++++.... ...+.++....+.
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~--~gg~VlyId~E~s~~~~-----ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQK--MGGVAAFIDAEHALDPV-----YAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHh--cCCeEEEEecccccchH-----HHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 4479999999999999999999875322 22356788877777654 4455543321 2344555555555
Q ss_pred hhcC-CceEEEEEeCCC
Q 045318 284 DGLS-RKKFLLVLDDMW 299 (1388)
Q Consensus 284 ~~l~-~k~~LlVlDdv~ 299 (1388)
..++ .+.-++|+|.+-
T Consensus 133 ~l~~~~~~dlvVIDSi~ 149 (356)
T 3hr8_A 133 ELVRSGVVDLIVVDSVA 149 (356)
T ss_dssp HHHHTSCCSEEEEECTT
T ss_pred HHhhhcCCCeEEehHhh
Confidence 4443 455689999983
No 249
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.25 E-value=0.01 Score=61.54 Aligned_cols=112 Identities=9% Similarity=-0.097 Sum_probs=63.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC--CCCcHHHHHHHHHhhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD--ADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--~~~~~~~~~~~l~~~l~ 287 (1388)
-.++.|+|..|.||||++..+.+... .+-..++.+....+.. ....+++.++.... ......++...+.+.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~--~~g~kVli~~~~~d~r---~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLE--YADVKYLVFKPKIDTR---SIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHH--HTTCCEEEEEECCCGG---GCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEEeccCch---HHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 37889999999999999988877532 2222334443333211 11233444443221 12234456666666665
Q ss_pred CceE-EEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh
Q 045318 288 RKKF-LLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ 329 (1388)
Q Consensus 288 ~k~~-LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~ 329 (1388)
+.++ +||+|.+..-..+..+.+. .+.+ .|-.||+|-+..
T Consensus 87 ~~~~dvViIDEaQ~l~~~~ve~l~-~L~~--~gi~Vil~Gl~~ 126 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDDRICEVAN-ILAE--NGFVVIISGLDK 126 (223)
T ss_dssp CTTCCEEEECSGGGSCTHHHHHHH-HHHH--TTCEEEEECCSB
T ss_pred CCCCCEEEEecCccCcHHHHHHHH-HHHh--CCCeEEEEeccc
Confidence 5545 9999999543333333332 2322 378899999853
No 250
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.24 E-value=0.072 Score=59.97 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=40.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
..-.++.|+|.+|+||||+|.+++....... .-..++|++....++..++.. ++..++
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~-~~~~~g 181 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRD-IADRFN 181 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHcC
Confidence 3457999999999999999999887522211 224688998888777766543 344443
No 251
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.035 Score=59.31 Aligned_cols=88 Identities=11% Similarity=0.081 Sum_probs=51.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccc----cCCceEEEEeCCccCHHHHHHHHHHHhcCCCC---------CCCcHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVES----HFDLKAWTCVSDDFDAIKVTKAILRSICMHTD---------ADDDLN 276 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~----~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------~~~~~~ 276 (1388)
-.++.|+|++|+|||||++.+........ .-..++|+.....+...++. ++++.++.... ...+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~ 102 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLL-AVAERYGLSGSDVLDNVAYARAFNTD 102 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHH-HHHHHTTCCHHHHHHTEEEEECCSHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHH-HHHHHcCCCHHHHhhCeEEEecCCHH
Confidence 36999999999999999999987421211 12567888877655555443 33444432210 111222
Q ss_pred H---HHHHHHhhcC-CceEEEEEeCC
Q 045318 277 S---LQVKLKDGLS-RKKFLLVLDDM 298 (1388)
Q Consensus 277 ~---~~~~l~~~l~-~k~~LlVlDdv 298 (1388)
+ ....+.+.+. .+.-+||+|.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~lliiD~~ 128 (243)
T 1n0w_A 103 HQTQLLYQASAMMVESRYALLIVDSA 128 (243)
T ss_dssp HHHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHHHHHhcCCceEEEEeCc
Confidence 2 2223334333 45668888988
No 252
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=94.97 E-value=0.076 Score=57.99 Aligned_cols=178 Identities=12% Similarity=0.104 Sum_probs=86.0
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDD-------LNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
..++|.++.++++.+....-. .+. .-.+-|.|+|+.|+||||||+.++.... . ..+.+..
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~---~~~~gvll~Gp~GtGKTtl~~~i~~~~~--~---~~i~~~~----- 106 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASG----- 106 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCCEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEH-----
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCcChHHHHHHHHHHHcC--C---CEEEecH-----
Confidence 468898877766655432100 000 0011288999999999999999998532 1 2223321
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC----------Chhhh----hhhcccccCCC--
Q 045318 254 AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND----------NYGDW----TSLRLPFVAGA-- 317 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~~~~~~-- 317 (1388)
.++. .... ......+...++..-.....++|+|++... ....+ ..+...+..+.
T Consensus 107 -~~~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~ 176 (278)
T 1iy2_A 107 -SDFV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 176 (278)
T ss_dssp -HHHH----HSTT-----THHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTT
T ss_pred -HHHH----HHHh-----hHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCC
Confidence 1111 1000 000111112222222245689999999321 00111 12222222221
Q ss_pred CCcEEEEEcCChhHHhh-----cCCCceEeCCCCChhhHHHHHHHcccCCCCCCCCchHHHHHHHHHHHcCCCh
Q 045318 318 SGSKIIVTTRNQSVASM-----MGSVSAYELKKLTDDDCRLVFTQHSLGTKDFSNHQHLKEIGEEILKKCNGLP 386 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~~-----~~~~~~~~l~~L~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~i~~~c~g~P 386 (1388)
....++.||...++... ..-...+.+...+.++-.+++..++-+ ........ ...+++.+.|..
T Consensus 177 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~-~~~~~~~~----~~~la~~~~G~~ 245 (278)
T 1iy2_A 177 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG-KPLAEDVD----LALLAKRTPGFV 245 (278)
T ss_dssp CCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT-SCBCTTCC----HHHHHHTCTTCC
T ss_pred CCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc-CCCCcccC----HHHHHHHcCCCC
Confidence 22345556665443321 123357888888888888888765421 11111111 234666676654
No 253
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.93 E-value=0.063 Score=57.95 Aligned_cols=83 Identities=12% Similarity=0.108 Sum_probs=54.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHH-HHHHHhh
Q 045318 212 VIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSL-QVKLKDG 285 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~-~~~l~~~ 285 (1388)
++-|.|++|+||||||.+++.....+..=..++||+....++.. .+++++...+ ...+.++. ...+...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 78999999999999998887653211112467899888888764 2566665432 23345554 3332222
Q ss_pred --c-CCceEEEEEeCCC
Q 045318 286 --L-SRKKFLLVLDDMW 299 (1388)
Q Consensus 286 --l-~~k~~LlVlDdv~ 299 (1388)
+ +++.-+||+|-|-
T Consensus 105 ~~i~~~~~~lvVIDSI~ 121 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLG 121 (333)
T ss_dssp HTCCTTCCEEEEEECST
T ss_pred HHhhccCceEEEEeccc
Confidence 2 4567899999983
No 254
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=94.93 E-value=0.024 Score=58.41 Aligned_cols=44 Identities=27% Similarity=0.320 Sum_probs=34.3
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|++.++++.+.+..... ....+|+|.|+.|+||||+++.+...
T Consensus 2 ~~~~~~~~l~~~~~~~~~-----~~~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 2 ELRDRIDFLCKTILAIKT-----AGRLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp CHHHHHHHHHHHHHTSCC-----SSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcc-----CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356677888888765422 44589999999999999999998863
No 255
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.92 E-value=0.014 Score=58.41 Aligned_cols=134 Identities=15% Similarity=0.013 Sum_probs=64.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC---ccCHHHHHHHHHHHh---cCCC-CCC-------CcHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD---DFDAIKVTKAILRSI---CMHT-DAD-------DDLN 276 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~---~~~~~~~~~~i~~~l---~~~~-~~~-------~~~~ 276 (1388)
..|-|++..|.||||.|-.+.-.. -.+=-.+.++.... ......++..+.-.+ +... ... ....
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA--~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARA--VGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACM 106 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHH--HHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH--HHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHH
Confidence 356677777799999997776531 12212344444333 222333333320000 0000 001 1112
Q ss_pred HHHHHHHhhcCCceE-EEEEeCCCC---CChhhhhhhcccccCCCCCcEEEEEcCChhHHhhcCCCceEeCCCC
Q 045318 277 SLQVKLKDGLSRKKF-LLVLDDMWN---DNYGDWTSLRLPFVAGASGSKIIVTTRNQSVASMMGSVSAYELKKL 346 (1388)
Q Consensus 277 ~~~~~l~~~l~~k~~-LlVlDdv~~---~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~~~~~~~~~~l~~L 346 (1388)
......++.+.+.+| |||||++-. -..-..+.+...+........||+|+|...-.-.-.++.+.++...
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 334455666655555 999999811 0112234444444445567899999998532221122334455443
No 256
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.89 E-value=0.05 Score=61.32 Aligned_cols=82 Identities=20% Similarity=0.141 Sum_probs=54.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLKD 284 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~~ 284 (1388)
-.++.|.|.+|+||||||.++..... ..-..++|++....++.. .++.++.... ...+.+++...+.+
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~--~~g~~vlyi~~E~s~~~~-----~a~~~g~d~~~l~i~~~~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQ--KAGGTCAFIDAEHALDPV-----YARALGVNTDELLVSQPDNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH--HTTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHH--HCCCeEEEEECCCChhHH-----HHHHcCCCHHHceeecCCcHHHHHHHHHH
Confidence 36888999999999999999886532 122468999988777654 2344443211 22345666666655
Q ss_pred hcC-CceEEEEEeCC
Q 045318 285 GLS-RKKFLLVLDDM 298 (1388)
Q Consensus 285 ~l~-~k~~LlVlDdv 298 (1388)
..+ ++--+||+|.+
T Consensus 147 l~~~~~~~lVVIDsl 161 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSV 161 (366)
T ss_dssp HHTTTCCSEEEEECT
T ss_pred HHhcCCCCEEEEeCh
Confidence 554 34459999998
No 257
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.88 E-value=0.048 Score=61.27 Aligned_cols=84 Identities=19% Similarity=0.106 Sum_probs=54.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|+|.+|+||||||.++...... .=..++|++....++.. .++.++.... ...+.++....+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~--~g~~vlyi~~E~~~~~~-----~a~~lG~~~~~l~i~~~~~~e~~l~~~~ 132 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQA--AGGIAAFIDAEHALDPE-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 132 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHH-----HHHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh--CCCeEEEEECCCCcCHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 3468999999999999999999865221 22467889888777653 2444543211 2234555555555
Q ss_pred hhcC-CceEEEEEeCCC
Q 045318 284 DGLS-RKKFLLVLDDMW 299 (1388)
Q Consensus 284 ~~l~-~k~~LlVlDdv~ 299 (1388)
...+ .+.-+||+|.+-
T Consensus 133 ~l~~~~~~~lIVIDsl~ 149 (349)
T 2zr9_A 133 MLVRSGALDIIVIDSVA 149 (349)
T ss_dssp HHHTTTCCSEEEEECGG
T ss_pred HHHhcCCCCEEEEcChH
Confidence 4443 345699999983
No 258
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=94.80 E-value=0.17 Score=57.20 Aligned_cols=157 Identities=10% Similarity=-0.070 Sum_probs=95.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHh-hcCC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKD-GLSR 288 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~-~l~~ 288 (1388)
.++..++|..|.||++.|+.+.+... ...|+....+.+....+.. ++.+.+.. -+-+
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~---------------------~l~~~~~~~plf~ 75 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAA-AQGFEEHHTFSIDPNTDWN---------------------AIFSLCQAMSLFA 75 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHH-HHTCCEEEEEECCTTCCHH---------------------HHHHHHHHHHHCC
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHH-hCCCCeeEEEEecCCCCHH---------------------HHHHHhcCcCCcc
Confidence 36888999999999999999887521 2234322222233333333 33222221 2345
Q ss_pred ceEEEEEeCCCC-CChhhhhhhcccccCCCCCcEEEEEcCC-------hhHHhhc-CCCceEeCCCCChhhHHHHHHHcc
Q 045318 289 KKFLLVLDDMWN-DNYGDWTSLRLPFVAGASGSKIIVTTRN-------QSVASMM-GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 289 k~~LlVlDdv~~-~~~~~~~~l~~~~~~~~~gs~iivTtR~-------~~v~~~~-~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
++-++|+|+++. -....++.+...+....+++.+|++|.. ..+.... .....++..++++++....+.+.+
T Consensus 76 ~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 76 SRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp SCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHHHH
Confidence 566889999966 4445677777666554567777766532 2344433 333678999999999887777665
Q ss_pred cCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 045318 360 LGTKDFSNHQHLKEIGEEILKKCNGLPLAAKTL 392 (1388)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~i~~~c~g~Plai~~~ 392 (1388)
-..+ .... .+.+..+++.++|...++...
T Consensus 156 ~~~g-~~i~---~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 156 KQLN-LELD---DAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHTT-CEEC---HHHHHHHHHSSTTCHHHHHHH
T ss_pred HHcC-CCCC---HHHHHHHHHHhchHHHHHHHH
Confidence 2211 1111 356788999999988776553
No 259
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.73 E-value=0.058 Score=59.04 Aligned_cols=87 Identities=17% Similarity=0.092 Sum_probs=44.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC-ccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD-DFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLS 287 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~-~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~ 287 (1388)
...+|+|+|.+|+||||++..++......... .+..+.... .....+.+....+..+.......+..++...+.. +
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~-~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~-~- 180 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK-KIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKEL-F- 180 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-CEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHH-G-
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC-EEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHH-h-
Confidence 34699999999999999999988653221111 234443321 1223333333333333222112233444444443 3
Q ss_pred CceEEEEEeCC
Q 045318 288 RKKFLLVLDDM 298 (1388)
Q Consensus 288 ~k~~LlVlDdv 298 (1388)
.+.=++|+|-.
T Consensus 181 ~~~dlvIiDT~ 191 (296)
T 2px0_A 181 SEYDHVFVDTA 191 (296)
T ss_dssp GGSSEEEEECC
T ss_pred cCCCEEEEeCC
Confidence 33457888943
No 260
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.52 E-value=0.055 Score=60.58 Aligned_cols=57 Identities=12% Similarity=0.106 Sum_probs=40.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccc---------cC-----CceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVES---------HF-----DLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~---------~F-----~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
.-.++.|+|.+|+||||+|.+++....... .. ..++|++....++..++.. +++.++
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~-~~~~~g 167 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQ-MAEHAG 167 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHH-HHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHH-HHHHcC
Confidence 347999999999999999999886421111 11 4678998888877776654 345554
No 261
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.51 E-value=0.04 Score=61.00 Aligned_cols=53 Identities=17% Similarity=-0.006 Sum_probs=34.1
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-ccCCceEEEEeCCcc
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-SHFDLKAWTCVSDDF 252 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~ 252 (1388)
++++.+..- .+-..++|+|..|+|||||++.+.+....+ ..++ ++++-+.+..
T Consensus 163 raID~~~pi-------~rGQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~-~I~~lIGER~ 216 (422)
T 3ice_A 163 RVLDLASPI-------GRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCV-LMVLLIDERP 216 (422)
T ss_dssp HHHHHHSCC-------BTTCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSE-EEEEEESSCH
T ss_pred eeeeeeeee-------cCCcEEEEecCCCCChhHHHHHHHHHHhhcCCCee-EEEEEecCCh
Confidence 455665543 333688999999999999999988742111 1222 3456666654
No 262
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=94.49 E-value=0.049 Score=57.75 Aligned_cols=114 Identities=14% Similarity=0.097 Sum_probs=59.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC--------------------
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-------------------- 270 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-------------------- 270 (1388)
.+++|+|+.|+|||||++.+....... =..+.|+.... ...++...+. .++....
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~--~~~v~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRD--GDPCIYVTTEE--SRDSIIRQAK-QFNWDFEEYIEKKLIIIDALMKEKEDQ 98 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHH--TCCEEEEESSS--CHHHHHHHHH-HTTCCCGGGBTTTEEEEECCC----CT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC--CCeEEEEEccc--CHHHHHHHHH-HhcchHHHHhhCCEEEEeccccccCce
Confidence 689999999999999999998642211 12455655433 3444443332 3321110
Q ss_pred ---CCCcHHHHHHHHHhhcC---CceEEEEEeCCCCC---ChhhhhhhcccccC--CCCCcEEEEEcCCh
Q 045318 271 ---ADDDLNSLQVKLKDGLS---RKKFLLVLDDMWND---NYGDWTSLRLPFVA--GASGSKIIVTTRNQ 329 (1388)
Q Consensus 271 ---~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~---~~~~~~~l~~~~~~--~~~gs~iivTtR~~ 329 (1388)
...+.+++...+.+.+. -+..+||+|..-.. +......+...+.. ...|..||++|...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~ 168 (235)
T 2w0m_A 99 WSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYA 168 (235)
T ss_dssp TBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC--
T ss_pred eeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccC
Confidence 01144555444444432 23349999998421 22222333322221 12577888888765
No 263
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.05 E-value=0.082 Score=59.40 Aligned_cols=83 Identities=19% Similarity=0.094 Sum_probs=52.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|.|.+|+||||||.+++..... .=..++|++....++... +..++.... ...+.+++...+.
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~--~g~~vlyid~E~s~~~~~-----a~~~g~~~~~l~i~~~~~~e~~~~~~~ 134 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQR--EGKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 134 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHH--TTCCEEEEESSCCCCHHH-----HHHTTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH--CCCeEEEEeCCCCccHHH-----HHHcCCChhheeeeCCCCHHHHHHHHH
Confidence 3468999999999999999998875322 223688998887776432 344443211 1223444444444
Q ss_pred hhcC-CceEEEEEeCC
Q 045318 284 DGLS-RKKFLLVLDDM 298 (1388)
Q Consensus 284 ~~l~-~k~~LlVlDdv 298 (1388)
...+ .+--+||+|.+
T Consensus 135 ~l~~~~~~~lVVIDsl 150 (356)
T 1u94_A 135 ALARSGAVDVIVVDSV 150 (356)
T ss_dssp HHHHHTCCSEEEEECG
T ss_pred HHHhccCCCEEEEcCH
Confidence 3332 34458999988
No 264
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.96 E-value=0.082 Score=59.05 Aligned_cols=56 Identities=13% Similarity=0.150 Sum_probs=39.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCcccccc----CCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESH----FDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~----F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
-.++.|+|.+|+||||+|.+++........ -..++|++....++..++.. +++.++
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~-~~~~~g 166 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIEN-MAKALG 166 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHH-HHHHTT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHH-HHHHhC
Confidence 368999999999999999998865221110 24678998888877776653 345554
No 265
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=93.85 E-value=0.052 Score=51.00 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=39.8
Q ss_pred eEEEeCCcccc--ccccccccCcccceeeccCcccccccc-chhcccccceeecCCCc
Q 045318 568 RVLCLREYNIC--KISNTIGDLKHLRHLDLSETLIETLPE-SVNTLYNLHTLLLESCS 622 (1388)
Q Consensus 568 r~L~L~~~~i~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~L~~~~ 622 (1388)
.+++.+++.++ .+|..+. .+|++|+|++|.|+.||. .+..+.+|++|+|++|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 36778888887 8886543 468888888888888865 45778888888888774
No 266
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.71 E-value=0.42 Score=50.01 Aligned_cols=23 Identities=26% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.+..-
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 267
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.62 E-value=0.048 Score=56.55 Aligned_cols=39 Identities=23% Similarity=0.288 Sum_probs=28.7
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.++|.+.+.... ....+|+|+|+.|.|||||++.+..-
T Consensus 7 ~~~~~~~~~~~~~------~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 7 LCQGVLERLDPRQ------PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp HHHHHHHHSCTTC------CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3445555554321 44589999999999999999999874
No 268
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.61 E-value=0.15 Score=56.10 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=32.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 184 HGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 184 vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|.......+...+...... ....+|+|.|+.|+||||+|+.+..-
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~----~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEP----KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCC----CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhccCCC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44444555555555443211 56689999999999999999998753
No 269
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=93.38 E-value=0.13 Score=59.06 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=49.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHHhc--------CCCCCCCcHHH----
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRSIC--------MHTDADDDLNS---- 277 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~l~--------~~~~~~~~~~~---- 277 (1388)
..++|+|..|+|||||++.+....... +-+..+++-+.+..+ ..+++.++.+.-. ....+......
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~~~-~~~i~V~~~iGerttev~el~~~l~~~~~l~~tvvv~~~~~d~pg~r~~~~~ 230 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIAQE-HGGISVFAGVGERTREGNDLYHEMKDSGVISKTAMVFGQMNEPPGARMRVAL 230 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHHHH-TCCCEEEEEESSCHHHHHHHHHHHHHTSGGGGEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhhhc-cCcEEEEeeeccCchHHHHHHHHhhhcCCcceeEEEEEcCCCCHHHHHHHHH
Confidence 468899999999999999998763222 224556666666543 3444444432200 01111111111
Q ss_pred HHHHHHhhc---CCceEEEEEeCC
Q 045318 278 LQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 278 ~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
..-.+.+++ +++++|+++||+
T Consensus 231 ~~ltiAEyFrd~~G~~VLl~~D~i 254 (473)
T 1sky_E 231 TGLTMAEYFRDEQGQDGLLFIDNI 254 (473)
T ss_dssp HHHHHHHHHHHHSCCEEEEEEECT
T ss_pred HHHHHHHHHHHhcCCcEEEEeccH
Confidence 011223332 589999999999
No 270
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=93.10 E-value=0.087 Score=58.18 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=33.1
Q ss_pred ccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 184 HGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 184 vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
|+.+.-.+++++.+...-.. +....|.|+|+.|+||||+++.++..
T Consensus 2 ~~~~~L~~~il~~l~~~i~~----g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED----NYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT----CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc----CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 44556667777776432211 44567899999999999999998874
No 271
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=93.06 E-value=0.4 Score=52.50 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|.+|+||||++..++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~ 127 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKM 127 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHH
Confidence 45689999999999999999999875
No 272
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.03 E-value=0.052 Score=55.36 Aligned_cols=25 Identities=32% Similarity=0.422 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|+.|+||||+++.+...
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 3478999999999999999999874
No 273
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.99 E-value=0.043 Score=55.24 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|++|+||||+|+.+.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
No 274
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=92.98 E-value=0.087 Score=57.52 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=29.4
Q ss_pred hHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 189 DKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++++..++...... ....+|.|.|++|+||||+|+.+...
T Consensus 15 ~~~~~~~~~l~~~~~~---~~~~livl~G~sGsGKSTla~~L~~~ 56 (287)
T 1gvn_B 15 RLNDNLEELIQGKKAV---ESPTAFLLGGQPGSGKTSLRSAIFEE 56 (287)
T ss_dssp HHHHHHHHHHTTCCCC---SSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCC---CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444555554432221 45678999999999999999999864
No 275
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=92.96 E-value=0.54 Score=53.88 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...||.++|.+|+||||++..++..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~ 123 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARY 123 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHH
Confidence 4689999999999999999888864
No 276
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=92.92 E-value=0.21 Score=57.00 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=37.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc----ccCCceEEEEeCCccCHHHHHHHHHHHhc
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVE----SHFDLKAWTCVSDDFDAIKVTKAILRSIC 266 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~----~~F~~~~wv~~s~~~~~~~~~~~i~~~l~ 266 (1388)
.-.++.|+|+.|+|||||+..++-..... ..-..++|+.....++...+ +.+++.++
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl-~~~a~~~g 237 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRL-VSIAQRFG 237 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHH-HHHHHHTT
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHH-HHHHHHcC
Confidence 34699999999999999999765321111 12346888887776665554 33555554
No 277
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.89 E-value=0.048 Score=54.82 Aligned_cols=20 Identities=50% Similarity=0.708 Sum_probs=18.8
Q ss_pred EEEEEEcCCCChHHHHHHHH
Q 045318 211 FVIPIVGMGGLGKTTLAQLV 230 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v 230 (1388)
.+|.|.|++|+||||+|+.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999999
No 278
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.77 E-value=0.05 Score=55.96 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|+|+.|+||||+|+.+...
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999864
No 279
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=92.73 E-value=0.28 Score=56.17 Aligned_cols=65 Identities=22% Similarity=0.259 Sum_probs=44.2
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHH
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRS 264 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~ 264 (1388)
+.++.|..- .+-..++|.|..|+|||+|++.+.+.. .+.+-+.++++-+.+... +.++.+++.+.
T Consensus 142 r~ID~l~pi-------gkGQr~~Ifgg~G~GKT~L~~~i~~~~-~~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 207 (482)
T 2ck3_D 142 KVVDLLAPY-------AKGGKIGLFGGAGVGKTVLIMELINNV-AKAHGGYSVFAGVGERTREGNDLYHEMIES 207 (482)
T ss_dssp HHHHHHSCE-------ETTCEEEEEECTTSSHHHHHHHHHHHT-TTTCSSEEEEEEESCCHHHHHHHHHHHHHH
T ss_pred EEEeccccc-------ccCCeeeeecCCCCChHHHHHHHHHhh-HhhCCCEEEEEECCCcchHHHHHHHHhhhc
Confidence 566666542 233578999999999999999998752 123346677888877654 45666666544
No 280
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.70 E-value=0.049 Score=54.44 Aligned_cols=23 Identities=22% Similarity=0.147 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999864
No 281
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=92.68 E-value=0.31 Score=53.90 Aligned_cols=54 Identities=17% Similarity=0.062 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCcccc-ccCCceEEEEeCCcc
Q 045318 191 KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVE-SHFDLKAWTCVSDDF 252 (1388)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~-~~F~~~~wv~~s~~~ 252 (1388)
-++++.+..- .+-..++|+|..|+|||+|++.+.+..... ..+. ++++-+.+..
T Consensus 163 iraID~l~Pi-------grGQR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~-~V~~lIGER~ 217 (427)
T 3l0o_A 163 TRLIDLFAPI-------GKGQRGMIVAPPKAGKTTILKEIANGIAENHPDTI-RIILLIDERP 217 (427)
T ss_dssp HHHHHHHSCC-------BTTCEEEEEECTTCCHHHHHHHHHHHHHHHCTTSE-EEEEECSCCH
T ss_pred chhhhhcccc-------cCCceEEEecCCCCChhHHHHHHHHHHhhcCCCeE-EEEEEeccCc
Confidence 4667777543 233578999999999999999998752211 1222 3455565553
No 282
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=92.65 E-value=0.17 Score=50.93 Aligned_cols=89 Identities=11% Similarity=0.109 Sum_probs=49.0
Q ss_pred HHhhccCceeeEEEeCCcccc-----ccccccccCcccceeeccCcccc-----ccccchhcccccceeecCCCcc--hh
Q 045318 558 VHMLLKLQCLRVLCLREYNIC-----KISNTIGDLKHLRHLDLSETLIE-----TLPESVNTLYNLHTLLLESCSR--LK 625 (1388)
Q Consensus 558 ~~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~--~~ 625 (1388)
...+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++|.|. .|-+.+..-+.|+.|+|++|.. +.
T Consensus 63 a~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig 142 (197)
T 1pgv_A 63 IEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLG 142 (197)
T ss_dssp HHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCC
T ss_pred HHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcC
Confidence 334455566777777777665 22344445566777777777665 2333444445577777765421 11
Q ss_pred -----hcchhhcccCCCCeeecCCCC
Q 045318 626 -----KLCADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 626 -----~lp~~i~~L~~L~~L~l~~~~ 646 (1388)
.+...+..-+.|+.|+++.+.
T Consensus 143 ~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 143 NQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 233344455666666665543
No 283
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.56 E-value=0.056 Score=54.44 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++++|+|+.|+|||||++.+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999864
No 284
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.52 E-value=0.22 Score=55.95 Aligned_cols=49 Identities=18% Similarity=0.184 Sum_probs=33.6
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccC----CceEEEEeCCccCHHH
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHF----DLKAWTCVSDDFDAIK 256 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F----~~~~wv~~s~~~~~~~ 256 (1388)
..-.++.|+|+.|+|||||+..++......... ..++|++....+...+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~ 181 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPER 181 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHH
Confidence 344899999999999999999998652111111 2348888766554443
No 285
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=92.51 E-value=0.57 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.235 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|.+|+||||++..++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~ 121 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALY 121 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999875
No 286
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=92.48 E-value=0.084 Score=56.61 Aligned_cols=43 Identities=19% Similarity=0.221 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 188 DDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 188 ~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++++..+....... ....+|.|+|++|+||||+|+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~---~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSS---KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp HHHHHHHHHHHTTCCCC---SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCcc---cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33444555555433222 45689999999999999999999864
No 287
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=92.46 E-value=0.063 Score=54.11 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5899999999999999999987
No 288
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.44 E-value=0.12 Score=56.26 Aligned_cols=26 Identities=27% Similarity=0.323 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|..|+||||||+.+...
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999988864
No 289
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=92.43 E-value=0.073 Score=54.73 Aligned_cols=25 Identities=36% Similarity=0.377 Sum_probs=22.4
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|+.|.||||+|+.+...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~ 48 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQM 48 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999999875
No 290
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=92.35 E-value=0.42 Score=59.37 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=77.8
Q ss_pred CCccccchhhHHHHHHHHhcCCCC-----CCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH
Q 045318 180 EAEVHGRDDDKKAIVELLLNDDLN-----ADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA 254 (1388)
Q Consensus 180 ~~~~vGr~~~~~~l~~~l~~~~~~-----~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~ 254 (1388)
-..+.|.++.++++.+.+.-.... .......+-|.++|++|.|||.+|+++++.. ... ++.++ .
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~--~~~-----f~~v~----~ 544 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC--QAN-----FISIK----G 544 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT--TCE-----EEECC----H
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh--CCc-----eEEec----c
Confidence 345778888888887765432111 0011233457799999999999999999862 222 23332 1
Q ss_pred HHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCCCh----------hh----hhhhcccccC--CCC
Q 045318 255 IKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWNDNY----------GD----WTSLRLPFVA--GAS 318 (1388)
Q Consensus 255 ~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----------~~----~~~l~~~~~~--~~~ 318 (1388)
.+ ++....+ .....+...+...-+..+++|++|+++.--. .. ...+...+.. ...
T Consensus 545 ~~----l~s~~vG-----ese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~ 615 (806)
T 3cf2_A 545 PE----LLTMWFG-----ESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKK 615 (806)
T ss_dssp HH----HHTTTCS-----SCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSS
T ss_pred ch----hhccccc-----hHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCC
Confidence 11 2221111 1122233333333345789999999954110 01 1122222221 122
Q ss_pred CcEEEEEcCChhHHh-h-c---CCCceEeCCCCChhhHHHHHHHcc
Q 045318 319 GSKIIVTTRNQSVAS-M-M---GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 319 gs~iivTtR~~~v~~-~-~---~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
+--||.||...+... . . .-...+.+..-+.++-.++|+.+.
T Consensus 616 ~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 616 NVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp SEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTS
T ss_pred CEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHh
Confidence 334444664432221 1 1 234567787767776677776654
No 291
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=92.34 E-value=0.092 Score=59.93 Aligned_cols=52 Identities=29% Similarity=0.339 Sum_probs=35.9
Q ss_pred ccccchhhHHHHHHHHhc-------CCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 182 EVHGRDDDKKAIVELLLN-------DDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 182 ~~vGr~~~~~~l~~~l~~-------~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|.+..++.+...+.. .............|.++|++|+|||++|+.+++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~ 74 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARL 74 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 478999888888877721 0000000012356889999999999999999975
No 292
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.20 E-value=0.55 Score=54.24 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=30.1
Q ss_pred hHHHHHHHHhcCCCCC-CCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 189 DKKAIVELLLNDDLNA-DCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 189 ~~~~l~~~l~~~~~~~-~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++.+.+......- ......++|.|+|.+|+||||+|..++..
T Consensus 78 ~~~~l~~~l~~~~~~~~~~~~~~~vI~ivG~~GvGKTT~a~~LA~~ 123 (433)
T 2xxa_A 78 VRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKF 123 (433)
T ss_dssp HHHHHHHHHCSSSCCCCCCSSSSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3455666664321110 01145689999999999999999999865
No 293
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=92.16 E-value=0.27 Score=56.58 Aligned_cols=65 Identities=22% Similarity=0.206 Sum_probs=44.8
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC-HHHHHHHHHHH
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD-AIKVTKAILRS 264 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~-~~~~~~~i~~~ 264 (1388)
+.++.|..- .+-..++|.|..|+|||+|+..+.+.. .+.+-+..+++-+.+... ..++.+++.+.
T Consensus 154 rvID~l~pi-------gkGqr~gIfgg~GvGKT~L~~~l~~~~-a~~~~~v~V~~~iGER~rEv~e~~~~~~~~ 219 (498)
T 1fx0_B 154 KVVNLLAPY-------RRGGKIGLFGGAGVGKTVLIMELINNI-AKAHGGVSVFGGVGERTREGNDLYMEMKES 219 (498)
T ss_dssp TTHHHHSCC-------CTTCCEEEEECSSSSHHHHHHHHHHHT-TTTCSSCEEEEEESCCSHHHHHHHHHHHHT
T ss_pred eEeeeeccc-------ccCCeEEeecCCCCCchHHHHHHHHHH-HhhCCCEEEEEEcccCcHHHHHHHHhhhcc
Confidence 455666543 233568999999999999999998752 123457788888887764 45666666543
No 294
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=92.12 E-value=0.065 Score=54.29 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.|.|+|+.|+||||+|+.+...
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999864
No 295
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.04 E-value=0.06 Score=53.86 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|+|+.|+||||+++.+...
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 296
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.97 E-value=0.061 Score=53.96 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.|.|+|+.|+|||||++.+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 34789999999999999998764
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=91.88 E-value=0.1 Score=52.26 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|+|+.|+||||+|+.+...
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~ 31 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQ 31 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh
Confidence 478999999999999999999864
No 298
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=91.88 E-value=0.59 Score=51.69 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=36.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRS 264 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (1388)
-.++.|.|.+|+||||+|..++.....++ ..++|++.- -+..++...+...
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g--~~vl~~slE--~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTT--CEEEEEESS--SCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcC--CeEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999986532222 466776654 4566666666654
No 299
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=91.81 E-value=0.085 Score=56.55 Aligned_cols=26 Identities=23% Similarity=0.369 Sum_probs=22.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|+||||+|+.+...
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999873
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.80 E-value=0.082 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.606 Sum_probs=20.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
..+++|+|+.|+|||||++.++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHSC
T ss_pred CEEEEEECCCCCCHHHHHHHHcc
Confidence 47999999999999999997554
No 301
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.76 E-value=0.082 Score=54.35 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|+|+.|+||||+++.+...
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999864
No 302
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=91.73 E-value=0.09 Score=53.65 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
No 303
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.72 E-value=0.092 Score=53.40 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+++|+|+.|+||||+++.+..
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5889999999999999999975
No 304
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.69 E-value=0.088 Score=54.48 Aligned_cols=25 Identities=32% Similarity=0.565 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|+.|+||||+++.+...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999875
No 305
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=91.52 E-value=0.095 Score=52.43 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|+|+.|+|||||++.+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5799999999999999999865
No 306
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=91.52 E-value=0.1 Score=53.90 Aligned_cols=26 Identities=38% Similarity=0.512 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|+.|+||||+|+.+...
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~ 44 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKH 44 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999999874
No 307
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.52 E-value=0.089 Score=53.72 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999875
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.45 E-value=0.091 Score=51.55 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++++|+|..|+||||++..+...
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4579999999999999999999875
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.44 E-value=0.69 Score=53.03 Aligned_cols=25 Identities=40% Similarity=0.393 Sum_probs=22.6
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.++|.+|+||||++..++..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4689999999999999999999865
No 310
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.44 E-value=0.1 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.474 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|+|+.|+||||+|+.+...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3468999999999999999999863
No 311
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.43 E-value=0.077 Score=53.48 Aligned_cols=24 Identities=38% Similarity=0.477 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|.|.|+.|+||||+|+.+...
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHH
Confidence 357889999999999999999864
No 312
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.42 E-value=0.095 Score=56.09 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|.|.|+.|+||||+|+.++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 57899999999999999999864
No 313
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.41 E-value=0.097 Score=54.06 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||++.+...
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHHhh
Confidence 68999999999999999999864
No 314
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.41 E-value=0.1 Score=54.17 Aligned_cols=25 Identities=48% Similarity=0.488 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|+.|+|||||++.+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHH
Confidence 4479999999999999999999874
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.40 E-value=0.082 Score=54.53 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|.|+|+.|+||||+++.+...
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHh
Confidence 34478999999999999999999864
No 316
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.33 E-value=0.078 Score=54.61 Aligned_cols=24 Identities=21% Similarity=0.398 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|+.|+||||+|+.+...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=91.33 E-value=0.078 Score=53.75 Aligned_cols=23 Identities=35% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++++|+|+.|+|||||++.+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~ 24 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47899999999999999999864
No 318
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=91.31 E-value=0.091 Score=52.18 Aligned_cols=25 Identities=28% Similarity=0.355 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~ 30 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLA 30 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999864
No 319
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=91.30 E-value=0.11 Score=53.66 Aligned_cols=26 Identities=35% Similarity=0.355 Sum_probs=23.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+..+|+|.|+.|+||||+|+.+...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 45689999999999999999999873
No 320
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=91.29 E-value=0.03 Score=56.56 Aligned_cols=108 Identities=11% Similarity=-0.065 Sum_probs=51.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCC--CCCCcHHHHHHHHHhhcCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHT--DADDDLNSLQVKLKDGLSR 288 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~--~~~~~~~~~~~~l~~~l~~ 288 (1388)
.++.|+|+.|+||||++..++.....++ . .+.++....+. ..-...+...++... ....+.. .+.+.+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g-~-~v~~~~~~~d~--r~~~~~i~s~~g~~~~~~~~~~~~----~~~~~~~~ 75 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGK-K-KVAVFKPKIDS--RYHSTMIVSHSGNGVEAHVIERPE----EMRKYIEE 75 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT-C-EEEEEEEC-------CCCEECC----CEECEEESSGG----GGGGGCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCC-C-eEEEEeecccc--ccCcccEEecCCCceeeEEECCHH----HHHHHhcC
Confidence 4788999999999999966665422121 1 22333222110 000000000111100 0011111 12333444
Q ss_pred ceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCCh
Q 045318 289 KKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQ 329 (1388)
Q Consensus 289 k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~ 329 (1388)
+.-+|++|.+..-+. +|......+.+. |..|++|.+..
T Consensus 76 ~~dvviIDE~Q~~~~-~~~~~l~~l~~~--~~~Vi~~Gl~~ 113 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP-SLFEVVKDLLDR--GIDVFCAGLDL 113 (184)
T ss_dssp TEEEEEECCGGGSCT-THHHHHHHHHHT--TCEEEEEEESB
T ss_pred CCCEEEEECcccCCH-HHHHHHHHHHHC--CCCEEEEeecc
Confidence 566999999965432 344443333332 77899988743
No 321
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.27 E-value=0.37 Score=53.36 Aligned_cols=52 Identities=15% Similarity=0.054 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
-.++.|.|.+|+||||+|..++..... +=..++|++. .-+..++...++...
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~--~g~~Vl~fSl--Ems~~ql~~Rlls~~ 97 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALN--DDRGVAVFSL--EMSAEQLALRALSDL 97 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHH--TTCEEEEEES--SSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEEEEeC--CCCHHHHHHHHHHHh
Confidence 368999999999999999999876322 1134555544 455677777765544
No 322
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=91.25 E-value=0.13 Score=51.66 Aligned_cols=24 Identities=13% Similarity=0.079 Sum_probs=21.1
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+.|+|++|+||||+|.++++.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~ 81 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHF 81 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHH
Confidence 346899999999999999999875
No 323
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=91.22 E-value=0.12 Score=52.22 Aligned_cols=25 Identities=32% Similarity=0.371 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|.|++|+||||+|+.+...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999875
No 324
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=91.21 E-value=0.8 Score=49.94 Aligned_cols=24 Identities=42% Similarity=0.459 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+++++|.+|+||||++..++..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~ 121 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF 121 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999999998865
No 325
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.19 E-value=0.12 Score=53.15 Aligned_cols=26 Identities=31% Similarity=0.378 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|+||||+|+.+.+.
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999864
No 326
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.15 E-value=0.17 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.454 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|.+|+|||||+..+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578999999999999999999875
No 327
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=91.12 E-value=0.14 Score=55.03 Aligned_cols=156 Identities=12% Similarity=0.098 Sum_probs=76.7
Q ss_pred CccccchhhHHHHHHHHhcCC-------CCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 181 AEVHGRDDDKKAIVELLLNDD-------LNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~-------~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
..++|.+..+.++.+....-. .+. .-.+-+.|+|+.|+||||||+.++.... . ..+.+..
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~---~~~~g~ll~G~~G~GKTtl~~~i~~~~~--~---~~i~~~~----- 82 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGA---RIPKGVLLVGPPGVGKTHLARAVAGEAR--V---PFITASG----- 82 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTC---CCCSEEEEECCTTSSHHHHHHHHHHHTT--C---CEEEEEH-----
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCC---CCCCeEEEECCCCCCHHHHHHHHHHHhC--C---CEEEeeH-----
Confidence 468888876666554332100 000 0011288999999999999999997532 1 1222221
Q ss_pred HHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCceEEEEEeCCCCC----------Chhhh----hhhcccccCCC--
Q 045318 254 AIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKKFLLVLDDMWND----------NYGDW----TSLRLPFVAGA-- 317 (1388)
Q Consensus 254 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~----~~l~~~~~~~~-- 317 (1388)
.++. .... ......+...++..-.....++++|++... ....+ ..+...+..+.
T Consensus 83 -~~~~----~~~~-----~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~ 152 (254)
T 1ixz_A 83 -SDFV----EMFV-----GVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKD 152 (254)
T ss_dssp -HHHH----HSCT-----THHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTT
T ss_pred -HHHH----HHHh-----hHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCC
Confidence 1111 1000 000111222222222245689999999321 00111 12222222221
Q ss_pred CCcEEEEEcCChhHHhh-c----CCCceEeCCCCChhhHHHHHHHcc
Q 045318 318 SGSKIIVTTRNQSVASM-M----GSVSAYELKKLTDDDCRLVFTQHS 359 (1388)
Q Consensus 318 ~gs~iivTtR~~~v~~~-~----~~~~~~~l~~L~~~~~~~lf~~~~ 359 (1388)
...-++.||...++... . .-...+.+...+.++-.+++...+
T Consensus 153 ~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~ 199 (254)
T 1ixz_A 153 TAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA 199 (254)
T ss_dssp CCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH
T ss_pred CCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH
Confidence 23345556666554321 1 223467888888888788877654
No 328
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=91.10 E-value=0.1 Score=53.20 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999874
No 329
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=91.09 E-value=0.13 Score=50.05 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||++.+..-
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 369999999999999999999864
No 330
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=91.07 E-value=0.13 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|+.|+|||||++.+..-
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 45589999999999999999999874
No 331
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=91.05 E-value=0.12 Score=57.08 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=21.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++.+||+|.|=|||||||.|..+...
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~a 71 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAA 71 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHH
Confidence 45699999999999999998777653
No 332
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.99 E-value=0.085 Score=52.86 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|.|.|+.|+||||+|+.+...
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~ 27 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKD 27 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5889999999999999999864
No 333
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.97 E-value=0.1 Score=53.76 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 5899999999999999999874
No 334
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.96 E-value=0.12 Score=53.38 Aligned_cols=22 Identities=36% Similarity=0.617 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999976
No 335
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=90.93 E-value=0.12 Score=52.35 Aligned_cols=25 Identities=16% Similarity=0.517 Sum_probs=21.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|+|+|+.|+|||||++.+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhh
Confidence 3468999999999999999999864
No 336
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=90.92 E-value=0.1 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.419 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+|+|+|+.|+||||+++.+..
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 3799999999999999999986
No 337
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.91 E-value=0.091 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++++|+|+.|+|||||++.+...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 57899999999999999999763
No 338
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=90.86 E-value=0.12 Score=53.48 Aligned_cols=24 Identities=29% Similarity=0.582 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|+|+.|+||||+++.+...
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 368999999999999999999865
No 339
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=90.78 E-value=0.12 Score=52.77 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEK 26 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998764
No 340
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=90.77 E-value=0.12 Score=55.50 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|.|.|++|+||||+|+.+...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 341
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.72 E-value=0.13 Score=52.91 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.4
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+.+||.|.|++|+||||.|+.+.+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999999875
No 342
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.64 E-value=0.12 Score=52.96 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|.|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999864
No 343
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=90.58 E-value=0.12 Score=54.41 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|+|+.|+||||+|+.+...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999863
No 344
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.48 E-value=0.13 Score=54.99 Aligned_cols=23 Identities=35% Similarity=0.434 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
..+|+|+|+.|+||||+++.+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999994
No 345
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=90.48 E-value=0.094 Score=53.03 Aligned_cols=23 Identities=26% Similarity=0.391 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999999999999864
No 346
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=90.43 E-value=0.16 Score=53.11 Aligned_cols=41 Identities=24% Similarity=0.242 Sum_probs=29.9
Q ss_pred cchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 185 GRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 185 Gr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.++..+.+.+.+.. ....+|+|+|.+|+|||||+..+...
T Consensus 13 ~~~~~~~~~~~~~~~--------~~~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 13 ENKRLAEKNREALRE--------SGTVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp HHHHHHHHHHHHHHH--------HTCEEEEEEECTTSCHHHHHHHHHHH
T ss_pred hcHHHHHHHHHhhcc--------cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 344445555555432 34589999999999999999998875
No 347
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.41 E-value=0.14 Score=51.73 Aligned_cols=23 Identities=26% Similarity=0.317 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999863
No 348
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=90.36 E-value=0.14 Score=56.17 Aligned_cols=25 Identities=32% Similarity=0.331 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|++|+||||+++.++.-
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagl 125 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRY 125 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 3469999999999999999999864
No 349
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.34 E-value=0.14 Score=52.98 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|+|||||++.+..-
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl 43 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRER 43 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 368999999999999999999864
No 350
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=90.29 E-value=1.2 Score=52.16 Aligned_cols=26 Identities=38% Similarity=0.394 Sum_probs=21.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++|+|+|.+|+||||++..+...
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~ 124 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYY 124 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999999864
No 351
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.23 E-value=0.17 Score=51.60 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3478999999999999999999864
No 352
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=90.22 E-value=0.58 Score=51.10 Aligned_cols=23 Identities=35% Similarity=0.286 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|.+|+||||++..++..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~ 121 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALY 121 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 353
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.21 E-value=0.16 Score=54.02 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|.|+.|+||||+++.+...
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHH
Confidence 3479999999999999999998763
No 354
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=90.19 E-value=0.34 Score=48.70 Aligned_cols=86 Identities=17% Similarity=0.144 Sum_probs=62.3
Q ss_pred hhccCceeeEEEeCCc-ccc-----ccccccccCcccceeeccCcccc-----ccccchhcccccceeecCCCcchh---
Q 045318 560 MLLKLQCLRVLCLREY-NIC-----KISNTIGDLKHLRHLDLSETLIE-----TLPESVNTLYNLHTLLLESCSRLK--- 625 (1388)
Q Consensus 560 ~~~~l~~Lr~L~L~~~-~i~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~L~~~~~~~--- 625 (1388)
.+..-+.|+.|+|+++ .|. .+-+.+..-..|+.|+|++|.|. .|-+.+..-+.|++|+|++|....
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga 115 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELL 115 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHH
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHH
Confidence 3356678999999985 765 24466677789999999999887 345556667889999999885432
Q ss_pred -hcchhhcccCCCCeeecCCC
Q 045318 626 -KLCADMGNLIKLRHLNNYNV 645 (1388)
Q Consensus 626 -~lp~~i~~L~~L~~L~l~~~ 645 (1388)
.+-..+..-+.|++|+++++
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 33444556667888888765
No 355
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.17 E-value=0.15 Score=51.53 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..-.+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHh
Confidence 34579999999999999999998863
No 356
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=90.16 E-value=0.12 Score=58.89 Aligned_cols=45 Identities=20% Similarity=0.264 Sum_probs=32.6
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..++.+........ ..-|.|+|++|+|||++|+.+++.
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~--------~~~vLl~G~~GtGKT~la~~la~~ 68 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG--------IGGVLVFGDRGTGKSTAVRALAAL 68 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG--------GCCEEEECCGGGCTTHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHhhCCC--------CceEEEECCCCccHHHHHHHHHHh
Confidence 358999886666544443211 123789999999999999999974
No 357
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.13 E-value=0.15 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|.|+.|+||||+|+.+...
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3358999999999999999999864
No 358
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=90.10 E-value=0.11 Score=51.76 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999874
No 359
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=90.09 E-value=0.16 Score=52.79 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 360
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.08 E-value=0.12 Score=53.73 Aligned_cols=23 Identities=35% Similarity=0.629 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||++.+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 68999999999999999999864
No 361
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.95 E-value=0.13 Score=52.67 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|.|+.|+||||+|+.+...
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~ 35 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEK 35 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999874
No 362
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=89.89 E-value=0.15 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999874
No 363
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=89.86 E-value=0.51 Score=54.78 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCH-HHHHHH
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDA-IKVTKA 260 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~-~~~~~~ 260 (1388)
++++.|..- .+-..++|.|..|+|||+|++++.+. .+-+.++++-+.+..+- .+++++
T Consensus 216 rvID~l~Pi-------gkGqr~~I~g~~g~GKT~L~~~ia~~----~~~~~~V~~~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 216 RVIDTFFPQ-------AKGGTAAIPGPAGSGKTVTQHQLAKW----SDAQVVIYIGCGERGNEMTDVLEE 274 (588)
T ss_dssp HHHHHHSCE-------ETTCEEEECSCCSHHHHHHHHHHHHH----SSCSEEEEEECCSSSSHHHHHHHH
T ss_pred chhhccCCc-------ccCCeEEeecCCCCCHHHHHHHHHhc----cCCCEEEEEEecccHHHHHHHHHH
Confidence 466666543 23357899999999999999999874 22356788888877653 444444
No 364
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=89.85 E-value=0.3 Score=57.62 Aligned_cols=22 Identities=32% Similarity=0.535 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+.|.|.+|+||||++.++...
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~ 68 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEA 68 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 8899999999999999998875
No 365
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.80 E-value=0.24 Score=52.55 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|.|+.|+||||+|+.+.+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~ 52 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKS 52 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999864
No 366
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.73 E-value=0.16 Score=54.30 Aligned_cols=23 Identities=35% Similarity=0.449 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|+|+.|+||||+++.+...
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~ 50 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAES 50 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 58999999999999999999853
No 367
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=89.71 E-value=0.16 Score=52.64 Aligned_cols=25 Identities=20% Similarity=0.228 Sum_probs=22.1
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.-.+++|+|+.|+|||||.+.+...
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3479999999999999999999864
No 368
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.67 E-value=0.19 Score=54.61 Aligned_cols=25 Identities=40% Similarity=0.780 Sum_probs=22.1
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhc
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
....+|+|.|+.|+||||+|+.+..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4457999999999999999999983
No 369
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.64 E-value=0.69 Score=53.32 Aligned_cols=94 Identities=17% Similarity=0.201 Sum_probs=54.4
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccccccCC-ceEEEEeCCccC-HHHHHHHHHHHhcCC
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLA-QLVYNDHMVESHFD-LKAWTCVSDDFD-AIKVTKAILRSICMH 268 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~ 268 (1388)
+.++.+..- .+-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ +.++.+++.+.=...
T Consensus 151 raID~l~Pi-------grGQR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~ 219 (502)
T 2qe7_A 151 KAIDSMIPI-------GRGQRELIIGDRQTGKTTIAIDTIINQK----GQDVICIYVAIGQKQSTVAGVVETLRQHDALD 219 (502)
T ss_dssp HHHHHSSCC-------BTTCBCEEEECSSSCHHHHHHHHHHGGG----SCSEEEEEEEESCCHHHHHHHHHHHHHTTCST
T ss_pred eeccccccc-------ccCCEEEEECCCCCCchHHHHHHHHHhh----cCCcEEEEEECCCcchHHHHHHHHHhhCCCcc
Confidence 455665442 23356799999999999995 5777752 234 347777777654 445555554321111
Q ss_pred C-------CCCCcHH---------HHHHHHHhhcCCceEEEEEeCC
Q 045318 269 T-------DADDDLN---------SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 269 ~-------~~~~~~~---------~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
. .+..... .+.+.++. +++.+||++||+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLl~~Dsl 263 (502)
T 2qe7_A 220 YTIVVTASASEPAPLLYLAPYAGCAMGEYFMY--KGKHALVVYDDL 263 (502)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEECH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1 1111111 12233333 589999999998
No 370
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.57 E-value=0.35 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.349 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|+.|+|||||++.+..-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999999863
No 371
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=89.49 E-value=0.11 Score=52.33 Aligned_cols=24 Identities=33% Similarity=0.260 Sum_probs=17.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHh
Confidence 358999999999999999999864
No 372
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=89.47 E-value=0.12 Score=51.23 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++++|+|..|+|||||++.+..-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 373
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=89.42 E-value=0.64 Score=54.17 Aligned_cols=58 Identities=14% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCcc-CHHHHHHH
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDF-DAIKVTKA 260 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~-~~~~~~~~ 260 (1388)
++++.|..- .+-..++|.|..|+|||+|+.++.+.. +-+.++++-+.+.. .+.+++++
T Consensus 221 rvID~l~Pi-------grGqr~~Ifgg~g~GKT~L~~~ia~~~----~~~v~V~~~iGER~~Ev~e~~~~ 279 (600)
T 3vr4_A 221 RVIDTFFPV-------TKGGAAAVPGPFGAGKTVVQHQIAKWS----DVDLVVYVGCGERGNEMTDVVNE 279 (600)
T ss_dssp HHHHHHSCC-------BTTCEEEEECCTTSCHHHHHHHHHHHS----SCSEEEEEEEEECHHHHHHHHHH
T ss_pred hhhhccCCc-------cCCCEEeeecCCCccHHHHHHHHHhcc----CCCEEEEEEecccHHHHHHHHHH
Confidence 566776543 333578999999999999999998752 23567777777663 33344433
No 374
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=89.38 E-value=0.17 Score=51.56 Aligned_cols=22 Identities=41% Similarity=0.631 Sum_probs=20.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999874
No 375
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=89.35 E-value=0.17 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~ 27 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQER 27 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999874
No 376
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.29 E-value=0.21 Score=54.66 Aligned_cols=25 Identities=40% Similarity=0.353 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+++|+|+.|+||||+++.++..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 4579999999999999999999864
No 377
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=89.25 E-value=0.34 Score=45.34 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=42.8
Q ss_pred ceeeccCcccc--ccccchhcccccceeecCCCcchhhcc-hhhcccCCCCeeecCCCC
Q 045318 591 RHLDLSETLIE--TLPESVNTLYNLHTLLLESCSRLKKLC-ADMGNLIKLRHLNNYNVP 646 (1388)
Q Consensus 591 r~L~L~~~~i~--~lp~~i~~L~~L~~L~L~~~~~~~~lp-~~i~~L~~L~~L~l~~~~ 646 (1388)
.+++.+++.++ .+|..+. .+|++|+|++|. +..+| ..|..+++|++|++.+|.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 47888999998 8987543 479999999985 55555 457889999999999986
No 378
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=89.25 E-value=0.95 Score=47.62 Aligned_cols=89 Identities=18% Similarity=0.209 Sum_probs=47.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcc-ccccC-CceEEEEeCCccCHHHHHHHHHHHhcCCCC---------------CC-
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHM-VESHF-DLKAWTCVSDDFDAIKVTKAILRSICMHTD---------------AD- 272 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~-~~~~F-~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~---------------~~- 272 (1388)
+.+.|+|..|.||||+...+.-+.. ..... ...+.+.+....-..++.+.+...++.... ..
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 156 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHA 156 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSS
T ss_pred CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCC
Confidence 4789999999999987665543311 11122 223444444333344454555444432210 00
Q ss_pred ----CcHHHHHHHHHhhcCCceEEEEEeCCCC
Q 045318 273 ----DDLNSLQVKLKDGLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 273 ----~~~~~~~~~l~~~l~~k~~LlVlDdv~~ 300 (1388)
...+.+...+.+.+++-+ +||+|.++.
T Consensus 157 ~Ivv~Tpg~l~~~l~~~l~~~~-~lVlDEah~ 187 (235)
T 3llm_A 157 SIMFCTVGVLLRKLEAGIRGIS-HVIVDEIHE 187 (235)
T ss_dssp EEEEEEHHHHHHHHHHCCTTCC-EEEECCTTS
T ss_pred eEEEECHHHHHHHHHhhhcCCc-EEEEECCcc
Confidence 133555566655554443 689999976
No 379
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.20 E-value=0.35 Score=54.69 Aligned_cols=38 Identities=26% Similarity=0.399 Sum_probs=28.3
Q ss_pred HHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 190 KKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 190 ~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++.+.+.... .+..+|+|+|.+|+||||++..+...
T Consensus 65 ~~~~~~~~~~~~------~~~~~I~i~G~~G~GKSTl~~~L~~~ 102 (355)
T 3p32_A 65 AQQLLLRLLPDS------GNAHRVGITGVPGVGKSTAIEALGMH 102 (355)
T ss_dssp HHHHHHHHGGGC------CCSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhHhhc------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 445555554322 45689999999999999999998754
No 380
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=89.14 E-value=0.17 Score=51.15 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.1
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+++|+|+.|+|||||++.++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 6899999999999999998864
No 381
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=89.11 E-value=0.69 Score=54.26 Aligned_cols=50 Identities=16% Similarity=0.115 Sum_probs=33.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAIL 262 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~ 262 (1388)
-.++.|.|.+|+||||+|..++....... =..++|++... +..++...++
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~-g~~Vl~~s~E~--s~~~l~~r~~ 252 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKT-NENVAIFSLEM--SAQQLVMRML 252 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHS-SCCEEEEESSS--CHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhC-CCcEEEEECCC--CHHHHHHHHH
Confidence 36899999999999999999987632221 12566765443 4456655554
No 382
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.03 E-value=0.47 Score=52.38 Aligned_cols=26 Identities=35% Similarity=0.408 Sum_probs=23.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|+|.+|+||||++..++..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~ 128 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANY 128 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 45689999999999999999998875
No 383
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.02 E-value=0.19 Score=52.14 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|+.|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999875
No 384
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.00 E-value=0.19 Score=52.26 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 385
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=88.94 E-value=0.22 Score=51.53 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|.|.|+.|+||||+|+.+...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999874
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=88.91 E-value=0.23 Score=49.88 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|+.|+||||+++.+...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999874
No 387
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=88.89 E-value=0.56 Score=54.05 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=54.5
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccccccCC-ceEEEEeCCccC-HHHHHHHHHHHhcC-
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLA-QLVYNDHMVESHFD-LKAWTCVSDDFD-AIKVTKAILRSICM- 267 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~- 267 (1388)
+.++.+..- .+-..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ +.++.+.+.+.=..
T Consensus 164 raID~l~Pi-------grGQR~~I~g~~g~GKT~Lal~~I~~~~----~~dv~~V~~~IGeR~~Ev~e~~~~~~~~g~m~ 232 (515)
T 2r9v_A 164 KAIDSMIPI-------GRGQRELIIGDRQTGKTAIAIDTIINQK----GQGVYCIYVAIGQKKSAIARIIDKLRQYGAME 232 (515)
T ss_dssp HHHHHHSCE-------ETTCBEEEEEETTSSHHHHHHHHHHTTT----TTTEEEEEEEESCCHHHHHHHHHHHHHTTGGG
T ss_pred ccccccccc-------ccCCEEEEEcCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCcHHHHHHHHHHHhCCCcc
Confidence 456666542 22356899999999999995 5777753 234 346777777654 44555555432111
Q ss_pred -------CCCCCCcHH--------HHHHHHHhhcCCceEEEEEeCC
Q 045318 268 -------HTDADDDLN--------SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 268 -------~~~~~~~~~--------~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
..++..... .+.+.++. +++.+||++||+
T Consensus 233 rtvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 276 (515)
T 2r9v_A 233 YTTVVVASASDPASLQYIAPYAGCAMGEYFAY--SGRDALVVYDDL 276 (515)
T ss_dssp GEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred eeEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEeccH
Confidence 111111111 12233333 589999999998
No 388
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=88.87 E-value=0.2 Score=52.80 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.. .+++|+|+.|+|||||.+.+.--
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTS
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCC
Confidence 45 78999999999999999999864
No 389
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=88.81 E-value=0.18 Score=52.97 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...|.|.|+.|+||||+|+.+...
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999864
No 390
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=88.80 E-value=0.16 Score=53.84 Aligned_cols=23 Identities=35% Similarity=0.507 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|+|+.|+||||+++.+...
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 57999999999999999999874
No 391
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=88.79 E-value=0.21 Score=55.02 Aligned_cols=23 Identities=43% Similarity=0.508 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|.|+.|+||||||+.++..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 68999999999999999999874
No 392
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=88.75 E-value=0.25 Score=54.70 Aligned_cols=26 Identities=38% Similarity=0.411 Sum_probs=22.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+++|+|+.|+||||+++.+...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~ 152 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANW 152 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34589999999999999999999864
No 393
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=88.73 E-value=0.21 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++++|+|..|+|||||++.+...
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 394
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=88.61 E-value=0.24 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
..+|+|.|+.|+||||+|+.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
No 395
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=88.56 E-value=0.94 Score=52.34 Aligned_cols=98 Identities=20% Similarity=0.259 Sum_probs=55.5
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccc----cccCC-ceEEEEeCCccC-HHHHHHHHHHH
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLA-QLVYNDHMV----ESHFD-LKAWTCVSDDFD-AIKVTKAILRS 264 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~----~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~ 264 (1388)
+.++.+..- .+-..++|.|..|+|||+|| ..+.+.... .++-+ .++++-+.+..+ +.++.+.+.+.
T Consensus 151 raID~l~Pi-------grGQR~~I~g~~g~GKT~Lal~~I~~q~~~~~~~~~~~d~~~V~~~IGeR~~Ev~~~~~~~~~~ 223 (510)
T 2ck3_A 151 KAVDSLVPI-------GRGQRELIIGDRQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDA 223 (510)
T ss_dssp HHHHHHSCC-------BTTCBCEEEESTTSSHHHHHHHHHHHTHHHHTSCCTTTCCEEEEEEESCCHHHHHHHHHHHHHT
T ss_pred eeecccccc-------ccCCEEEEecCCCCCchHHHHHHHHHHHhhccccccCCCeEEEEEECCCCcHHHHHHHHHHHhc
Confidence 456666543 23356789999999999995 567765321 01234 467777877654 44555555432
Q ss_pred hcCC-------CCCCCcHH---------HHHHHHHhhcCCceEEEEEeCC
Q 045318 265 ICMH-------TDADDDLN---------SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 265 l~~~-------~~~~~~~~---------~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
=... ..+..... .+.+.++. +++.+||++||+
T Consensus 224 g~m~~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 271 (510)
T 2ck3_A 224 DAMKYTIVVSATASDAAPLQYLAPYSGCSMGEYFRD--NGKHALIIYDDL 271 (510)
T ss_dssp TCGGGEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETH
T ss_pred CCcccceEEEECCCCCHHHHHHHHHHHHHHHHHHHH--cCCcEEEEEcCH
Confidence 1111 11111111 12233333 589999999998
No 396
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=88.52 E-value=0.23 Score=52.34 Aligned_cols=45 Identities=20% Similarity=0.193 Sum_probs=30.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCcccc---c-cCCceEEEEeCCccC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVE---S-HFDLKAWTCVSDDFD 253 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~---~-~F~~~~wv~~s~~~~ 253 (1388)
.-.+++|+|+.|+|||||++.++...... . .-...+|+.-...+.
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~ 72 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR 72 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC
Confidence 34799999999999999999997531111 1 123467766544333
No 397
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.51 E-value=0.27 Score=53.91 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=21.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|.|+|+.|+||||||..++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~ 63 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAH 63 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 398
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=88.48 E-value=0.22 Score=50.89 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|+|.|+.|+||||+|+.+.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999874
No 399
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.43 E-value=0.22 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+.--
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999863
No 400
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=88.38 E-value=0.22 Score=51.24 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+|+|.|+.|+||||+|+.+...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999875
No 401
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.36 E-value=0.12 Score=53.78 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999999864
No 402
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=88.34 E-value=1 Score=53.71 Aligned_cols=54 Identities=9% Similarity=0.000 Sum_probs=36.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
.-.++.|.|.+|+||||+|.+++.+...+ +=..++|++... +..++...++...
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~-~g~~vl~~s~E~--s~~~l~~r~~~~~ 294 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTA-MGKKVGLAMLEE--SVEETAEDLIGLH 294 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTT-SCCCEEEEESSS--CHHHHHHHHHHHH
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHh-cCCcEEEEeccC--CHHHHHHHHHHHH
Confidence 34688999999999999999998763222 112567766544 4567776665443
No 403
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.34 E-value=0.19 Score=52.63 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.2
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...|.|.|+.|+||||+|+.+...
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999999999874
No 404
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=88.32 E-value=0.22 Score=52.04 Aligned_cols=23 Identities=30% Similarity=0.379 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+..-
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999863
No 405
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=88.30 E-value=0.23 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.287 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
-.+++|+|+.|+|||||++.+..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 36899999999999999998884
No 406
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=88.28 E-value=0.23 Score=51.70 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 407
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=88.08 E-value=0.24 Score=51.54 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+|+|.|+.|+||||+|+.+...
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~ 32 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARA 32 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999864
No 408
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.04 E-value=0.28 Score=53.04 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|.|+|+.|+||||||..++..
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~ 26 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKR 26 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHT
T ss_pred cEEEEECCCcCCHHHHHHHHHHh
Confidence 68999999999999999999875
No 409
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=88.02 E-value=0.24 Score=51.50 Aligned_cols=22 Identities=23% Similarity=0.447 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|+|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999764
No 410
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=88.02 E-value=0.17 Score=53.39 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=16.1
Q ss_pred EEEEEEcCCCChHHHHHHHHh-cC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVY-ND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~-~~ 233 (1388)
.+++|+|+.|+||||+++.+. ..
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC--
T ss_pred CEEEEECCCCCCHHHHHHHHHhcC
Confidence 689999999999999999998 53
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.99 E-value=0.29 Score=54.76 Aligned_cols=26 Identities=38% Similarity=0.327 Sum_probs=22.9
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+++|+|+.|+||||+++.++..
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~ 180 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHR 180 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhh
Confidence 34589999999999999999999864
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=87.88 E-value=0.56 Score=54.30 Aligned_cols=43 Identities=28% Similarity=0.347 Sum_probs=29.8
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFD 253 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~ 253 (1388)
....+++|+|..|+||||+++.+...... ....+++.-...+.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhh---cCCeEEEecCcccc
Confidence 45689999999999999999999864221 13445554444444
No 413
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.84 E-value=0.26 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+..-
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999874
No 414
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=87.82 E-value=0.2 Score=51.49 Aligned_cols=23 Identities=30% Similarity=0.235 Sum_probs=20.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||++.+..-
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999853
No 415
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=87.80 E-value=0.25 Score=53.19 Aligned_cols=22 Identities=41% Similarity=0.474 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+++|+|+.|+|||||++.+.-
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~G 56 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNG 56 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999985
No 416
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=87.70 E-value=0.5 Score=53.80 Aligned_cols=86 Identities=15% Similarity=0.226 Sum_probs=50.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCC----ceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHHH-
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFD----LKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLNS- 277 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~----~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~~- 277 (1388)
..++|.|..|+|||+|+.++.+.... +-+ .++++-+.+.. .+.++.+++.+.=... ..+.....+
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~--~~d~~~~~~V~~~iGeR~~Ev~e~~~~~~~~g~~~rtvvV~atsd~p~~~r~ 229 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV--LDSSDDFAVVFAAIGITFEEAEFFMEDFRQTGAIDRSVMFMNLANDPAIERI 229 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC--SSCSSCEEEEEEEEEECHHHHHHHHHHHHHHTGGGGEEEEEEETTSCHHHHH
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh--ccCCCceEEEEEEecCCcHHHHHHHHHHhhcCCccceEEEEECCCCCHHHHH
Confidence 45789999999999999999986433 222 56666666554 3455555544321110 111111111
Q ss_pred ----HHHHHHhhc---CCceEEEEEeCC
Q 045318 278 ----LQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 278 ----~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
....+.+++ +++.+|+++||+
T Consensus 230 ~a~~~a~tiAEyfrd~~G~~VLl~~Dsl 257 (465)
T 3vr4_D 230 ATPRMALTAAEYLAYEKGMHVLVIMTDM 257 (465)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 112234444 379999999999
No 417
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=87.68 E-value=0.31 Score=56.01 Aligned_cols=53 Identities=25% Similarity=0.272 Sum_probs=35.7
Q ss_pred CccccchhhHHHHHHHHhcC------CCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLND------DLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~------~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.++.++.+...+... ..........+-|.++|++|+||||+|+.++..
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~ 73 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKL 73 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHH
Confidence 45889888888887665321 000000012345889999999999999999975
No 418
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.61 E-value=0.67 Score=63.09 Aligned_cols=84 Identities=20% Similarity=0.092 Sum_probs=54.9
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
..++|.|+|++|+|||+||.++......+ =..++|+++...++... ++.++.... .....++....++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~--G~~v~Fi~~e~~~~~l~-----a~~~G~dl~~l~v~~~~~~E~~l~~~~ 1498 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 1498 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEEEcccccCHHH-----HHHcCCCchhceeecCChHHHHHHHHH
Confidence 44789999999999999999998753222 23577888888777655 344442211 1223345555555
Q ss_pred hhcC-CceEEEEEeCCC
Q 045318 284 DGLS-RKKFLLVLDDMW 299 (1388)
Q Consensus 284 ~~l~-~k~~LlVlDdv~ 299 (1388)
+..+ .+.-+||+|.+.
T Consensus 1499 ~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1499 ALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp HHHHHTCCSEEEESCGG
T ss_pred HHHhcCCCCEEEEcChh
Confidence 4433 456799999994
No 419
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=87.55 E-value=0.27 Score=50.74 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|+|.|+.|+||||+|+.+...
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~ 25 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAA 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 8999999999999999999863
No 420
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.54 E-value=0.27 Score=52.64 Aligned_cols=24 Identities=33% Similarity=0.353 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|+|||||.+.+.--
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999864
No 421
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=87.54 E-value=0.31 Score=53.36 Aligned_cols=24 Identities=29% Similarity=0.265 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|.|+|+.|+||||||+.++..
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 368999999999999999999874
No 422
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=87.52 E-value=0.35 Score=47.64 Aligned_cols=23 Identities=22% Similarity=0.511 Sum_probs=20.8
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|+|+|.+|+|||||.+.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999999874
No 423
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.46 E-value=0.23 Score=51.14 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.++.-
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 424
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=87.42 E-value=0.28 Score=51.85 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.++--
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 425
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=87.35 E-value=0.33 Score=51.44 Aligned_cols=24 Identities=29% Similarity=0.319 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||.+.+..-
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 379999999999999999999853
No 426
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=87.34 E-value=0.29 Score=52.35 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+.--
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 68999999999999999999863
No 427
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=87.32 E-value=0.32 Score=52.41 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=22.7
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....++.+.|.||+||||++..+...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~ 37 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRY 37 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHH
Confidence 45688999999999999999999854
No 428
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=87.26 E-value=0.35 Score=52.19 Aligned_cols=25 Identities=28% Similarity=0.106 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.|+|+.|+||||||..++..
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCcEEEEECCCccCHHHHHHHHHHh
Confidence 3578999999999999999999874
No 429
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=87.24 E-value=0.28 Score=52.62 Aligned_cols=23 Identities=35% Similarity=0.548 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||++.+..-
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 68999999999999999999874
No 430
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.22 E-value=0.3 Score=51.95 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+++|+|+.|.|||||.+.+..
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~G 51 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAG 51 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999987
No 431
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=87.18 E-value=0.29 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+..-
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999864
No 432
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=87.13 E-value=0.36 Score=59.10 Aligned_cols=43 Identities=21% Similarity=0.265 Sum_probs=35.8
Q ss_pred CccccchhhHHHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 181 AEVHGRDDDKKAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 181 ~~~vGr~~~~~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..++|.+..++.+...+... ..+.|+|+.|+||||||+.++..
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g----------~~vll~Gp~GtGKTtlar~ia~~ 83 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK----------RHVLLIGEPGTGKSMLGQAMAEL 83 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEECchhhHhhccccccCC----------CEEEEEeCCCCCHHHHHHHHhcc
Confidence 46899988888877777542 36899999999999999999975
No 433
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=87.06 E-value=0.3 Score=49.56 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...|+|+|..|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 467899999999999999999875
No 434
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=87.04 E-value=0.33 Score=53.74 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...++|+|+|-||+||||+|..++..
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~ 64 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAA 64 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceEEEEECCCCccHHHHHHHHHHH
Confidence 45689999999999999999888764
No 435
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=87.01 E-value=0.3 Score=51.78 Aligned_cols=23 Identities=48% Similarity=0.583 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.+..-
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 436
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=86.97 E-value=0.29 Score=49.31 Aligned_cols=22 Identities=45% Similarity=0.531 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|+|+|.+|+|||||.+.+...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999874
No 437
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.95 E-value=0.31 Score=52.35 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=21.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.++.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 68999999999999999999874
No 438
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.84 E-value=0.32 Score=51.80 Aligned_cols=23 Identities=26% Similarity=0.418 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.++--
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999999863
No 439
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=86.83 E-value=1.3 Score=50.59 Aligned_cols=107 Identities=18% Similarity=0.019 Sum_probs=56.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCC---CCCCCcHHHHHHHHHh
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMH---TDADDDLNSLQVKLKD 284 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~---~~~~~~~~~~~~~l~~ 284 (1388)
...++..|.|.+|.||||+.++.++. .... |........ .++.+.+... .............+.+
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~~-------~~~l-VlTpT~~aa----~~l~~kl~~~~~~~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVNF-------EEDL-ILVPGRQAA----EMIRRRANASGIIVATKDNVRTVDSFLMN 226 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCCT-------TTCE-EEESCHHHH----HHHHHHHTTTSCCCCCTTTEEEHHHHHHT
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhcc-------CCeE-EEeCCHHHH----HHHHHHhhhcCccccccceEEEeHHhhcC
Confidence 56789999999999999999988752 1112 222222222 3333344311 1112222222233333
Q ss_pred hcCCc---eEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChh
Q 045318 285 GLSRK---KFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQS 330 (1388)
Q Consensus 285 ~l~~k---~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~ 330 (1388)
....+ -=++|+|++.-.+...+..+.... +..+||+.--..+
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~~~l~~l~~~~----~~~~vilvGD~~Q 271 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHTGCVNFLVEMS----LCDIAYVYGDTQQ 271 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCHHHHHHHHHHT----TCSEEEEEECTTS
T ss_pred CCCCCCCcCCEEEEeCcccCCHHHHHHHHHhC----CCCEEEEecCccc
Confidence 32211 348999999665555555544332 2267776654433
No 440
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=86.83 E-value=0.36 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+-|+|+|.+|+|||||++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999875
No 441
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=86.81 E-value=0.38 Score=48.86 Aligned_cols=25 Identities=36% Similarity=0.299 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....|+|+|.+|+|||||...+...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999875
No 442
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.73 E-value=0.31 Score=50.74 Aligned_cols=23 Identities=22% Similarity=0.449 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.|.|+.|+||||+|+.+...
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~ 28 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKE 28 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46889999999999999999874
No 443
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.72 E-value=0.33 Score=49.69 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+|.|.|++|+||+|.|+.+...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999875
No 444
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.70 E-value=0.32 Score=50.86 Aligned_cols=22 Identities=41% Similarity=0.478 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999864
No 445
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=86.70 E-value=2.3 Score=48.83 Aligned_cols=94 Identities=17% Similarity=0.231 Sum_probs=54.7
Q ss_pred HHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHH-HHHhcCccccccCC-ceEEEEeCCccC-HHHHHHHHHHHhcCC
Q 045318 192 AIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLA-QLVYNDHMVESHFD-LKAWTCVSDDFD-AIKVTKAILRSICMH 268 (1388)
Q Consensus 192 ~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~~~ 268 (1388)
+.++.|..- .+-..++|.|..|+|||+|| ..+.+. .+-+ .++++-+.+..+ +.++.+++.+.=...
T Consensus 151 kaID~l~Pi-------grGQR~~Ifg~~g~GKT~l~l~~I~n~----~~~dv~~V~~~IGeR~~ev~e~~~~l~~~g~m~ 219 (513)
T 3oaa_A 151 KAVDSMIPI-------GRGQRELIIGDRQTGKTALAIDAIINQ----RDSGIKCIYVAIGQKASTISNVVRKLEEHGALA 219 (513)
T ss_dssp HHHHHHSCC-------BTTCBCEEEESSSSSHHHHHHHHHHTT----SSSSCEEEEEEESCCHHHHHHHHHHHHHHSCST
T ss_pred eeecccccc-------ccCCEEEeecCCCCCcchHHHHHHHhh----ccCCceEEEEEecCChHHHHHHHHHHhhcCccc
Confidence 455666543 22346789999999999996 567764 2233 357888887754 445555543321111
Q ss_pred --------CCCCCcHH--------HHHHHHHhhcCCceEEEEEeCC
Q 045318 269 --------TDADDDLN--------SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 269 --------~~~~~~~~--------~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
.++..... .+.+.++. +++.+||++||+
T Consensus 220 ~tvvV~atad~p~~~r~~a~~~a~tiAEyfrd--~G~dVLli~Dsl 263 (513)
T 3oaa_A 220 NTIVVVATASESAALQYLAPYAGCAMGEYFRD--RGEDALIIYDDL 263 (513)
T ss_dssp TEEEEEECTTSCHHHHHHHHHHHHHHHHHHHH--TTCEEEEEEETH
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHHHHHHHh--cCCCEEEEecCh
Confidence 11111111 12333443 589999999999
No 446
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.68 E-value=0.32 Score=51.53 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.+..-
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999874
No 447
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=86.63 E-value=0.33 Score=51.90 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.+..-
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 68999999999999999999864
No 448
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=86.59 E-value=0.32 Score=50.50 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|.|.|+.|+||||+|+.+...
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEK 23 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999999874
No 449
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=86.50 E-value=0.34 Score=52.17 Aligned_cols=24 Identities=42% Similarity=0.451 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||.+.++.-
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 368999999999999999999863
No 450
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.45 E-value=0.34 Score=51.01 Aligned_cols=23 Identities=26% Similarity=0.297 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.|.|+.|+||||+|+.+.+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57889999999999999999875
No 451
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=86.41 E-value=0.58 Score=52.77 Aligned_cols=25 Identities=28% Similarity=0.054 Sum_probs=22.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+++|+|+.|+|||||++.+...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3469999999999999999999963
No 452
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=86.38 E-value=0.34 Score=52.77 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.4
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||++.+..-
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 368999999999999999999863
No 453
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=86.29 E-value=0.34 Score=51.56 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|+|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 454
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.27 E-value=0.19 Score=54.88 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=19.0
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+..+|+|.|+.|+||||+|+.+...
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~ 28 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQI 28 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999998863
No 455
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=86.27 E-value=0.56 Score=53.77 Aligned_cols=88 Identities=14% Similarity=0.175 Sum_probs=51.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccccc--CCceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCCcHH----
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESH--FDLKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADDDLN---- 276 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~--F~~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~~~~---- 276 (1388)
..++|.|..|+|||+|+..++++...... =+.++++-+.+.. .+.++.+++.+.=... ..+.....
T Consensus 153 Qr~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~iGER~~Ev~e~~~~~~~~g~m~rtvvV~~tsd~p~~~r~~~ 232 (469)
T 2c61_A 153 QKLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAAMGITNEEAQYFMSDFEKTGALERAVVFLNLADDPAVERIVT 232 (469)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEEEEECHHHHHHHHHHHHHHSGGGGEEEEEEETTSCHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEEccCCcHHHHHHHHHHHhccCccceEEEEECCCCCHHHHHHH
Confidence 45788999999999999999987443221 1356666676654 3455666655431111 01111111
Q ss_pred -HHHHHHHhhc---CCceEEEEEeCC
Q 045318 277 -SLQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 277 -~~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
.....+.+++ +++.+|+++||+
T Consensus 233 ~~~a~tiAEyfrdd~G~dVLl~~Dsl 258 (469)
T 2c61_A 233 PRMALTAAEYLAYEHGMHVLVILTDI 258 (469)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEEECH
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeCH
Confidence 1112233444 379999999997
No 456
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=86.24 E-value=0.34 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.359 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.++.-
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 58999999999999999999874
No 457
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=86.20 E-value=0.39 Score=47.90 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+.|.|.|+.|+||||||.++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999874
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=86.11 E-value=0.36 Score=51.82 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.++--
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 68999999999999999999863
No 459
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=86.07 E-value=0.57 Score=56.51 Aligned_cols=105 Identities=15% Similarity=0.076 Sum_probs=54.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHH-hhcC--
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLK-DGLS-- 287 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~-~~l~-- 287 (1388)
+++.|.|.+|+||||++..+....... ...+.+......-...+ .+.++.. ...+..+..... .+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~---g~~Vl~~ApT~~Aa~~L----~e~~~~~---a~Tih~ll~~~~~~~~~~~ 274 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESL---GLEVGLCAPTGKAARRL----GEVTGRT---ASTVHRLLGYGPQGFRHNH 274 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHH----HHHHTSC---EEEHHHHTTEETTEESCSS
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEEecCcHHHHHHh----Hhhhccc---HHHHHHHHcCCcchhhhhh
Confidence 578899999999999999988742221 23444444332222222 2222211 111111100000 0000
Q ss_pred ---CceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCC
Q 045318 288 ---RKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRN 328 (1388)
Q Consensus 288 ---~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~ 328 (1388)
.+.-+||+|++...+...+..+...++ .+.++|+.--.
T Consensus 275 ~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD~ 315 (574)
T 3e1s_A 275 LEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGDT 315 (574)
T ss_dssp SSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEECT
T ss_pred cccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEecc
Confidence 122489999996666566666665554 46777776533
No 460
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=86.06 E-value=0.38 Score=49.18 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.3
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...|+|+|..|+|||||.+.+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
No 461
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=85.98 E-value=0.44 Score=50.96 Aligned_cols=108 Identities=16% Similarity=0.160 Sum_probs=54.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHH---HHHH--HhcCCCCCCCcHHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTK---AILR--SICMHTDADDDLNSLQVKLKD 284 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~---~i~~--~l~~~~~~~~~~~~~~~~l~~ 284 (1388)
-.+++|+|+.|+||||+++.+..-.. ..+...+++.- .+... +.+ .++. .++. +. ..+...+.+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g-~~i~~--~~~~~~~~v~q~~~gl---~~---~~l~~~la~ 93 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIE-DPIEY--VFKHKKSIVNQREVGE---DT---KSFADALRA 93 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEE-SSCCS--CCCCSSSEEEEEEBTT---TB---SCHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcC-Cccee--ecCCcceeeeHHHhCC---CH---HHHHHHHHH
Confidence 37999999999999999999886421 11122333211 11000 000 0000 0000 01 123445555
Q ss_pred hcCCceEEEEEeCCCCCChhhhhhhcccccCCCCCcEEEEEcCChhHHh
Q 045318 285 GLSRKKFLLVLDDMWNDNYGDWTSLRLPFVAGASGSKIIVTTRNQSVAS 333 (1388)
Q Consensus 285 ~l~~k~~LlVlDdv~~~~~~~~~~l~~~~~~~~~gs~iivTtR~~~v~~ 333 (1388)
.+..+.=+|++|..- +......+.... ..|.-|++||.+..+..
T Consensus 94 aL~~~p~illlDEp~--D~~~~~~~l~~~---~~g~~vl~t~H~~~~~~ 137 (261)
T 2eyu_A 94 ALREDPDVIFVGEMR--DLETVETALRAA---ETGHLVFGTLHTNTAID 137 (261)
T ss_dssp HHHHCCSEEEESCCC--SHHHHHHHHHHH---HTTCEEEEEECCSSHHH
T ss_pred HHhhCCCEEEeCCCC--CHHHHHHHHHHH---ccCCEEEEEeCcchHHH
Confidence 555566688899984 323333322221 24667888887765443
No 462
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=85.86 E-value=0.47 Score=47.87 Aligned_cols=24 Identities=21% Similarity=0.461 Sum_probs=21.5
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...|+|+|.+|+|||||.+.+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467899999999999999999874
No 463
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=85.85 E-value=0.37 Score=50.63 Aligned_cols=26 Identities=31% Similarity=0.229 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|+||||+++.+...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34479999999999999999998864
No 464
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=85.84 E-value=0.74 Score=53.14 Aligned_cols=82 Identities=16% Similarity=0.214 Sum_probs=48.2
Q ss_pred EEEEEEcCCCChHHHHH-HHHhcCccccccCC-ceEEEEeCCccC-HHHHHHHHHHHhc--------CCCCCCCc----H
Q 045318 211 FVIPIVGMGGLGKTTLA-QLVYNDHMVESHFD-LKAWTCVSDDFD-AIKVTKAILRSIC--------MHTDADDD----L 275 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa-~~v~~~~~~~~~F~-~~~wv~~s~~~~-~~~~~~~i~~~l~--------~~~~~~~~----~ 275 (1388)
..++|.|..|+|||+|| ..+.+.. .-+ .++++-+.+..+ +.++.+++.+.=. ...++... .
T Consensus 164 QR~~Ifg~~g~GKT~Lal~~I~~~~----~~dv~~V~~~iGeR~~Ev~~~~~~~~~~g~m~rtvvV~atad~p~~~r~~a 239 (507)
T 1fx0_A 164 QRELIIGDRQTGKTAVATDTILNQQ----GQNVICVYVAIGQKASSVAQVVTNFQERGAMEYTIVVAETADSPATLQYLA 239 (507)
T ss_dssp CBCBEEESSSSSHHHHHHHHHHTCC----TTTCEEEEEEESCCHHHHHHHHHHTGGGTGGGSEEEEEECTTSCGGGTTHH
T ss_pred CEEEEecCCCCCccHHHHHHHHHhh----cCCcEEEEEEcCCCchHHHHHHHHHHhcCccccceEEEECCCCCHHHHHHH
Confidence 56789999999999995 5777753 234 357777777653 3344444332111 01111111 1
Q ss_pred H----HHHHHHHhhcCCceEEEEEeCC
Q 045318 276 N----SLQVKLKDGLSRKKFLLVLDDM 298 (1388)
Q Consensus 276 ~----~~~~~l~~~l~~k~~LlVlDdv 298 (1388)
. .+.+.++. +++.+||++||+
T Consensus 240 ~~~a~tiAEyfrd--~G~dVLli~Dsl 264 (507)
T 1fx0_A 240 PYTGAALAEYFMY--RERHTLIIYDDL 264 (507)
T ss_dssp HHHHHHHHHHHHH--TTCEEEEEEECH
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEecH
Confidence 1 22334444 589999999998
No 465
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=85.81 E-value=0.53 Score=46.88 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=22.3
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+...|+|+|.+|+|||||...+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999875
No 466
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=85.68 E-value=1.7 Score=50.76 Aligned_cols=53 Identities=15% Similarity=0.044 Sum_probs=36.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHh
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSI 265 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l 265 (1388)
-.++.|.|.+|+||||+|..++....... =..++|++.. -+..++...++...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~-g~~vl~~slE--~~~~~l~~R~~~~~ 252 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKE-GVGVGIYSLE--MPAAQLTLRMMCSE 252 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTT-CCCEEEEESS--SCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhC-CCeEEEEECC--CCHHHHHHHHHHHH
Confidence 36899999999999999999987632211 1246676554 44566666665443
No 467
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=85.64 E-value=0.4 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|.|+|++|+||||+|+.+...
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45579999999999999999999875
No 468
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=85.58 E-value=0.69 Score=48.85 Aligned_cols=37 Identities=19% Similarity=0.189 Sum_probs=27.1
Q ss_pred HHHHHHHhcCCCCCCCCCCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 191 KAIVELLLNDDLNADCDGGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 191 ~~l~~~l~~~~~~~~~~~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..+..|+.... ++...|.++|++|+|||.+|.++++.
T Consensus 91 ~~l~~~l~~~~------~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKF------GKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCS------TTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCC------CCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 34556665421 22356899999999999999999974
No 469
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=85.53 E-value=0.4 Score=52.89 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=20.5
Q ss_pred EEEEEEcCCCChHHHHHHHHhc
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5899999999999999999986
No 470
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=85.45 E-value=0.72 Score=52.51 Aligned_cols=88 Identities=15% Similarity=0.210 Sum_probs=50.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCcccc--------ccCC-ceEEEEeCCcc-CHHHHHHHHHHHhcCC-------CCCCC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVE--------SHFD-LKAWTCVSDDF-DAIKVTKAILRSICMH-------TDADD 273 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~--------~~F~-~~~wv~~s~~~-~~~~~~~~i~~~l~~~-------~~~~~ 273 (1388)
..++|.|..|+|||+|+.++.+..... ++=+ .++++-+.+.. .+.++.+++.+.=... ..+..
T Consensus 148 Qr~~Ifgg~G~GKt~L~~~Ia~~~~a~~~~~~~~~d~~~~~~V~~~iGeR~~Ev~e~~~~l~~~g~~~rtvvv~~t~d~p 227 (464)
T 3gqb_B 148 QKLPIFSGSGLPANEIAAQIARQATVRPDLSGEGEKEEPFAVVFAAMGITQRELSYFIQEFERTGALSRSVLFLNKADDP 227 (464)
T ss_dssp CBCCEEEETTSCHHHHHHHHHHHCBCCHHHHCCCSTTCCEEEEEEEEEECHHHHHHHHHHHHHTSGGGGEEEEEEETTSC
T ss_pred CEEEEecCCCCCchHHHHHHHHHHHhcccccccccCCCceEEEEEEecCchHHHHHHHHHhhhcccccceEEEEECCCCC
Confidence 457899999999999999999864431 1111 55666666554 3445555543321000 01111
Q ss_pred cHHH-----HHHHHHhhc---CCceEEEEEeCC
Q 045318 274 DLNS-----LQVKLKDGL---SRKKFLLVLDDM 298 (1388)
Q Consensus 274 ~~~~-----~~~~l~~~l---~~k~~LlVlDdv 298 (1388)
...+ ....+.+++ +++.+|+++||+
T Consensus 228 ~~~r~~~~~~a~tiAEyfrd~~G~~VLl~~Ddl 260 (464)
T 3gqb_B 228 TIERILTPRMALTVAEYLAFEHDYHVLVILTDM 260 (464)
T ss_dssp THHHHHHHHHHHHHHHHHHHTTCCEEEEEEETH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCh
Confidence 1111 112334444 379999999999
No 471
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=85.41 E-value=0.39 Score=47.06 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=19.8
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|.++|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999865
No 472
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.38 E-value=0.4 Score=51.57 Aligned_cols=22 Identities=41% Similarity=0.727 Sum_probs=20.0
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++|+|+.|+|||||.+.++.-
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999863
No 473
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=85.26 E-value=3.1 Score=52.20 Aligned_cols=90 Identities=13% Similarity=0.066 Sum_probs=45.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC--------------CC----
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD--------------AD---- 272 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~--------------~~---- 272 (1388)
.++.|+|+.|.||||++..+.........-...+.+.+....-..++...+...++.... ..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~ 189 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILK 189 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEE
Confidence 478899999999999665554322111111233444443332233444445444432110 00
Q ss_pred -CcHHHHHHHHHh-hcCCceEEEEEeCCCC
Q 045318 273 -DDLNSLQVKLKD-GLSRKKFLLVLDDMWN 300 (1388)
Q Consensus 273 -~~~~~~~~~l~~-~l~~k~~LlVlDdv~~ 300 (1388)
...+.+...+.. .+-.+--+||+|++..
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~ 219 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHE 219 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGG
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccc
Confidence 112334333322 2334556899999964
No 474
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=85.25 E-value=0.91 Score=46.08 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.5
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.|+|=|.-|+||||.++.+++.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~ 23 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999999875
No 475
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.25 E-value=0.52 Score=54.40 Aligned_cols=25 Identities=40% Similarity=0.385 Sum_probs=22.2
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|+|+|.+|+||||+|..+...
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~ 122 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARY 122 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999998875
No 476
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=85.22 E-value=0.53 Score=49.23 Aligned_cols=25 Identities=36% Similarity=0.389 Sum_probs=22.5
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...+|.|.|+.|+||||+++.+...
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4478999999999999999999975
No 477
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=85.18 E-value=2.1 Score=49.63 Aligned_cols=51 Identities=14% Similarity=0.131 Sum_probs=33.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHH
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRS 264 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~ 264 (1388)
-.++.|.|.+|+||||+|..++.+...++ ..++|++.- -+..++...++..
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g--~~vl~fSlE--ms~~ql~~R~~~~ 247 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDND--DVVNLHSLE--MGKKENIKRLIVT 247 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTT--CEEEEECSS--SCTTHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcC--CEEEEEECC--CCHHHHHHHHHHH
Confidence 36899999999999999999987633221 245665443 3344555555443
No 478
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=85.11 E-value=0.44 Score=50.29 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.5
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....+|+|.|+.|+||||+++.+...
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999999863
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=85.01 E-value=0.38 Score=52.57 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.0
Q ss_pred cEEEEEEcCCCChHHHHHHHHhc
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYN 232 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~ 232 (1388)
-.+++|+|+.|.|||||++.+..
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCEEEEECCCCchHHHHHHHHHc
Confidence 36899999999999999999976
No 480
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=85.00 E-value=0.46 Score=47.19 Aligned_cols=24 Identities=38% Similarity=0.648 Sum_probs=20.9
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..-|+|+|.+|+|||||.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 356789999999999999999875
No 481
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=84.99 E-value=0.42 Score=51.96 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.++.|+|++|+|||||+..+...
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999998863
No 482
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=84.99 E-value=0.43 Score=48.26 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.3
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
--|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 45789999999999999999865
No 483
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=84.90 E-value=0.44 Score=50.91 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=21.1
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.+++|+|+.|.|||||.+.++.-
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999874
No 484
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=84.70 E-value=0.44 Score=52.38 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.7
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|.+|+|||||++.++..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 368999999999999999999875
No 485
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=84.62 E-value=0.48 Score=47.06 Aligned_cols=23 Identities=22% Similarity=0.329 Sum_probs=20.6
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|+|+|.+|+|||||.+.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999875
No 486
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=84.52 E-value=0.57 Score=46.04 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=20.8
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.--|+|+|.+|+|||||++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999865
No 487
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=84.51 E-value=0.55 Score=49.94 Aligned_cols=39 Identities=18% Similarity=0.215 Sum_probs=27.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSD 250 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~ 250 (1388)
-.++.|.|.+|+||||+|.+++.... ..=..++|++...
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~--~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL--KMGEPGIYVALEE 61 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEESSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEccC
Confidence 36899999999999999988875421 1123567766544
No 488
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=84.42 E-value=0.57 Score=46.95 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
....|+|+|.+|+|||||.+.+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3467889999999999999999875
No 489
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=84.41 E-value=1.2 Score=60.81 Aligned_cols=85 Identities=21% Similarity=0.099 Sum_probs=56.8
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCC-----CCCcHHHHHHHHH
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTD-----ADDDLNSLQVKLK 283 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~-----~~~~~~~~~~~l~ 283 (1388)
.-.++.|+|++|+||||||.+++...... =..++|++....++... ++.++.... ...+.+++...++
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~--G~~vlyis~E~s~~~~~-----a~~lGvd~~~L~I~~~~~~e~il~~~~ 454 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQRE--GKTCAFIDAEHALDPIY-----ARKLGVDIDNLLCSQPDTGEQALEICD 454 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTT--TCCEEEECTTSCCCHHH-----HHHTTCCTTTCEEECCSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhc--CCeEEEEEcCCCHHHHH-----HHHcCCCHHHeEEeCCCCHHHHHHHHH
Confidence 34799999999999999999998763322 23678888877776542 455554322 2345666666665
Q ss_pred hhc-CCceEEEEEeCCCC
Q 045318 284 DGL-SRKKFLLVLDDMWN 300 (1388)
Q Consensus 284 ~~l-~~k~~LlVlDdv~~ 300 (1388)
+.. +.+.-+||+|-+..
T Consensus 455 ~lv~~~~~~lIVIDSL~a 472 (2050)
T 3cmu_A 455 ALARSGAVDVIVVDSVAA 472 (2050)
T ss_dssp HHHHHTCCSEEEESCGGG
T ss_pred HHHHhcCCcEEEECCHHH
Confidence 443 24556999998843
No 490
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=84.30 E-value=0.57 Score=47.59 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=21.7
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999875
No 491
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.14 E-value=0.53 Score=49.83 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
..|.|.|..|+||||+++.+...
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~ 25 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKT 25 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999875
No 492
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=84.04 E-value=0.5 Score=51.29 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=21.6
Q ss_pred cEEEEEEcCCCChHHHHHHHHhcC
Q 045318 210 LFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 210 ~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-.+++|+|+.|.|||||.+.+..-
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcC
Confidence 368999999999999999999864
No 493
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=84.00 E-value=0.51 Score=46.32 Aligned_cols=23 Identities=35% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.-|+|+|.+|+|||||.+.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999865
No 494
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=83.90 E-value=0.54 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.530 Sum_probs=20.4
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|+|.|-||+||||+|..++..
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~ 24 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSG 24 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHH
T ss_pred cEEEEecCCCCcHHHHHHHHHHH
Confidence 57888999999999999888865
No 495
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=83.89 E-value=2.6 Score=59.79 Aligned_cols=139 Identities=14% Similarity=0.058 Sum_probs=73.7
Q ss_pred EEEEEEcCCCChHHHHHHHHhcCccccccCCceEEEEeCCccCHHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhcCCce
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYNDHMVESHFDLKAWTCVSDDFDAIKVTKAILRSICMHTDADDDLNSLQVKLKDGLSRKK 290 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~~~~~~~F~~~~wv~~s~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~k~ 290 (1388)
+-|.++|++|+|||++|+.+.... ..+ ..+.+..+...+...+++.+-..+.......... ....-.+|+
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~---~~~-~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~------~~P~~~gk~ 1337 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNS---SLY-DVVGINFSKDTTTEHILSALHRHTNYVTTSKGLT------LLPKSDIKN 1337 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC---SSC-EEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEE------EEEBSSSSC
T ss_pred CeEEEECCCCCCHHHHHHHHHhcC---CCC-ceEEEEeecCCCHHHHHHHHHHHhhhccccCCcc------ccCCCCCce
Confidence 356799999999999997776542 122 3455677777777776666554443211000000 000014688
Q ss_pred EEEEEeCCCCCChh------hhhhhcccccCC-----C-------CCcEEEEEcCChh------HHhh-cCCCceEeCCC
Q 045318 291 FLLVLDDMWNDNYG------DWTSLRLPFVAG-----A-------SGSKIIVTTRNQS------VASM-MGSVSAYELKK 345 (1388)
Q Consensus 291 ~LlVlDdv~~~~~~------~~~~l~~~~~~~-----~-------~gs~iivTtR~~~------v~~~-~~~~~~~~l~~ 345 (1388)
.++.+||+.-...+ ..+.+...+..+ . .+..+|.++.... +... ...-.++.+..
T Consensus 1338 ~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf~vi~i~~ 1417 (2695)
T 4akg_A 1338 LVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHAAILYLGY 1417 (2695)
T ss_dssp EEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTEEEEECCC
T ss_pred EEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhheeeEEEeCC
Confidence 99999997433222 122222222111 1 1234455553321 1111 11124688888
Q ss_pred CChhhHHHHHHHcc
Q 045318 346 LTDDDCRLVFTQHS 359 (1388)
Q Consensus 346 L~~~~~~~lf~~~~ 359 (1388)
.++++-..+|....
T Consensus 1418 P~~~~l~~I~~~il 1431 (2695)
T 4akg_A 1418 PSGKSLSQIYEIYY 1431 (2695)
T ss_dssp CTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888877654
No 496
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=83.85 E-value=0.55 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=20.2
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
--|+|+|.+|+|||||.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999874
No 497
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=83.83 E-value=0.49 Score=46.51 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=19.3
Q ss_pred EEEEEcCCCChHHHHHHHHhcC
Q 045318 212 VIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 212 vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
-|+|+|.+|+|||||.+.+...
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCc
Confidence 4789999999999999998754
No 498
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=83.81 E-value=0.57 Score=48.67 Aligned_cols=26 Identities=35% Similarity=0.293 Sum_probs=22.2
Q ss_pred CCcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 208 GGLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 208 ~~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
.....|.|+|.+|+|||||+..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999999875
No 499
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=83.75 E-value=0.52 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=21.0
Q ss_pred EEEEEEcCCCChHHHHHHHHhcC
Q 045318 211 FVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 211 ~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
++|.|.|+.|+||||||..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHH
Confidence 68999999999999999999864
No 500
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=83.74 E-value=0.51 Score=47.45 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.3
Q ss_pred CcEEEEEEcCCCChHHHHHHHHhcC
Q 045318 209 GLFVIPIVGMGGLGKTTLAQLVYND 233 (1388)
Q Consensus 209 ~~~vv~I~G~gGiGKTtLa~~v~~~ 233 (1388)
...-|+|+|.+|+|||||++.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456789999999999999999875
Done!