BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045319
(149 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GC3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|E Chain E, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|F Chain F, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|G Chain G, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC3|H Chain H, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Tryptophan
pdb|1GC4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|1GC4|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2 Complexed With Aspartate
pdb|5BJ4|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
pdb|5BJ4|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 2
Length = 385
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|1BJW|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus
pdb|1BJW|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus
Length = 382
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|1GCK|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1GCK|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1 Complexed With Aspartate
pdb|1B5P|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
pdb|1B5P|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Double
Mutant 1
Length = 385
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|5BJ3|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|C Chain C, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
pdb|5BJ3|D Chain D, Thermus Thermophilus Aspartate Aminotransferase Tetra
Mutant 1
Length = 385
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|1BKG|A Chain A, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|B Chain B, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|C Chain C, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
pdb|1BKG|D Chain D, Aspartate Aminotransferase From Thermus Thermophilus With
Maleate
Length = 385
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|1B5O|A Chain A, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
pdb|1B5O|B Chain B, Thermus Thermophilus Aspartate Aminotransferase Single
Mutant 1
Length = 385
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 3 KSSLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKRLHFQPGNTGSILETAKFQF 62
+S+ +P + AT LEALT +A +EMA +A R +R G T L+ +
Sbjct: 262 QSTTSPDTIAQWAT--LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVRPS- 318
Query: 63 KDCVALAIDSEDAYSDFRRSMEEMVEA 89
+ +D+ D R+ E ++EA
Sbjct: 319 -GAFYVLMDTSPIAPDEVRAAERLLEA 344
>pdb|3T8Q|A Chain A, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
pdb|3T8Q|B Chain B, Crystal Structure Of Mandelate RacemaseMUCONATE
LACTONIZING ENZYME Family Protein From Hoeflea
Phototrophica
Length = 370
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 48 PGNTGSILETAKFQFKDCVALAIDSEDAYSDFRRSME--EMVEAYGLKYWE 96
PG T I+ T + D VAL +D+ Y +++E +M+E G+ ++E
Sbjct: 162 PGRTEEIVPTIRAAMDDSVALLVDANSCYGP-EQAIEVGKMLEQNGISHYE 211
>pdb|2IP4|A Chain A, Crystal Structure Of Glycinamide Ribonucleotide
Synthetase From Thermus Thermophilus Hb8
pdb|2IP4|B Chain B, Crystal Structure Of Glycinamide Ribonucleotide
Synthetase From Thermus Thermophilus Hb8
Length = 417
Score = 26.6 bits (57), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 22 LTAGDAGEE--LLEMAIKALRSKRLHFQPGNTG 52
L G G E LL A ++ R KRL+ PGN G
Sbjct: 4 LVVGSGGREHALLWKAAQSPRVKRLYAAPGNAG 36
>pdb|3TCS|A Chain A, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
pdb|3TCS|B Chain B, Crystal Structure Of A Putative Racemase From Roseobacter
Denitrificans
Length = 388
Score = 26.2 bits (56), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 8/57 (14%)
Query: 48 PGNTGSILETAKFQFKDCVALAIDSEDAYSDFRR-SMEEMVEAYGL-------KYWE 96
PG T I+ T + + D V L ID+ Y+ R + M++ +G YWE
Sbjct: 182 PGRTEEIIPTMRRELGDDVDLLIDANSCYTPDRAIEVGHMLQDHGFCHFEEPCPYWE 238
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,796,171
Number of Sequences: 62578
Number of extensions: 134613
Number of successful extensions: 323
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 322
Number of HSP's gapped (non-prelim): 11
length of query: 149
length of database: 14,973,337
effective HSP length: 90
effective length of query: 59
effective length of database: 9,341,317
effective search space: 551137703
effective search space used: 551137703
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)