BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045319
         (149 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SAB6|C71AI_ARATH Cytochrome P450 71A18 OS=Arabidopsis thaliana GN=CYP71A18 PE=2 SV=2
          Length = 497

 Score = 31.2 bits (69), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 10/72 (13%)

Query: 70  IDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVG------AFID 123
           ++   AYSD    ME++V+ + L+  EH  + + + L + K+KN+G  V         +D
Sbjct: 239 VEVSRAYSDL---MEKVVQEH-LEAGEHKADFVNILLSIEKEKNNGFKVQRNDIKFMILD 294

Query: 124 IFSQGISSSCSF 135
           +F  GIS+S + 
Sbjct: 295 MFIGGISTSSTL 306


>sp|P02713|ACHG_CHICK Acetylcholine receptor subunit gamma OS=Gallus gallus GN=CHRNG PE=3
           SV=1
          Length = 514

 Score = 30.0 bits (66), Expect = 4.8,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 5/67 (7%)

Query: 80  RRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFSQGISSSCSFSYCA 139
           R S+  MV+A     W+   ELL       K+K    ++   ++   +G+ S+C+  +C 
Sbjct: 374 RSSLGLMVKADEYMLWKARTELL-----FEKQKERDGLMKTVLEKIGRGLESNCAQDFCQ 428

Query: 140 AASSSSP 146
           +   +SP
Sbjct: 429 SLEEASP 435


>sp|Q5NLG3|NIFH_ZYMMO Nitrogenase iron protein OS=Zymomonas mobilis subsp. mobilis
           (strain ATCC 31821 / ZM4 / CP4) GN=nifH PE=3 SV=1
          Length = 295

 Score = 30.0 bits (66), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 4/58 (6%)

Query: 30  ELLEMAIKALRSKRLHFQPGNTGSILETAKFQFKDCVALAIDSEDA--YSDFRRSMEE 85
           EL E   K L SK +HF P N  +I++ A+ + +  +  A DS+ A  Y +  R + E
Sbjct: 195 ELAEALAKRLNSKLIHFVPRN--NIVQHAELRKQTVLQYAPDSDQANEYRELARKIHE 250


>sp|Q8BZQ7|ANC2_MOUSE Anaphase-promoting complex subunit 2 OS=Mus musculus GN=Anapc2 PE=1
           SV=2
          Length = 837

 Score = 30.0 bits (66), Expect = 5.8,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 48/106 (45%), Gaps = 9/106 (8%)

Query: 5   SLNPVNVCDTATFQLEALTAGDAGEELLEMAIKALRSKR--------LHFQPGNTGSILE 56
           ++ PV       FQ +A    +   ++++M +  LR +         L  +P  T S++E
Sbjct: 673 AVTPVQAVVLLYFQNQASWTLEELSKVVKMPVALLRRRMSVWLQQGVLREEPPGTFSVIE 732

Query: 57  TAKFQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELL 102
             + Q +D + L IDS+D       S  +  E   L +W +++ +L
Sbjct: 733 EERPQDRDNMVL-IDSDDESDSGMASQADQKEEELLLFWAYIQAML 777


>sp|Q9UJX6|ANC2_HUMAN Anaphase-promoting complex subunit 2 OS=Homo sapiens GN=ANAPC2 PE=1
           SV=1
          Length = 822

 Score = 29.3 bits (64), Expect = 7.7,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 45/98 (45%), Gaps = 15/98 (15%)

Query: 13  DTATFQLEALTAGDAGEELLEMAIKALRSKR--------LHFQPGNTGSILETAKFQFKD 64
           D A++ LE L+        ++M +  LR +         L  +P  T S++E  + Q +D
Sbjct: 672 DQASWTLEELSKA------VKMPVALLRRRMSVWLQQGVLREEPPGTFSVIEEERPQDRD 725

Query: 65  CVALAIDSEDAYSDFRRSMEEMVEAYGLKYWEHLEELL 102
            + L IDS+D       S  +  E   L +W +++ +L
Sbjct: 726 NMVL-IDSDDESDSGMASQADQKEEELLLFWTYIQAML 762


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.131    0.374 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,028,830
Number of Sequences: 539616
Number of extensions: 1954157
Number of successful extensions: 4764
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 4764
Number of HSP's gapped (non-prelim): 7
length of query: 149
length of database: 191,569,459
effective HSP length: 107
effective length of query: 42
effective length of database: 133,830,547
effective search space: 5620882974
effective search space used: 5620882974
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)