Query 045319
Match_columns 149
No_of_seqs 134 out of 221
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 21:24:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2rg8_A Programmed cell death p 81.7 3.1 0.0001 31.6 5.8 47 75-124 5-52 (165)
2 2nsz_A Programmed cell death p 80.5 1.7 5.8E-05 31.6 3.8 48 75-124 2-49 (129)
3 2ion_A PDCD4, programmed cell 80.1 1.7 6E-05 32.6 3.9 50 74-125 3-52 (152)
4 2zu6_B Programmed cell death p 59.1 15 0.00052 30.5 5.4 51 74-126 160-210 (307)
5 1ugp_A NitrIle hydratase alpha 57.3 10 0.00035 30.9 3.9 51 73-123 13-64 (203)
6 1ug3_A EIF4GI, eukaryotic prot 54.3 21 0.00071 29.3 5.4 47 75-124 6-53 (339)
7 2zzd_C Thiocyanate hydrolase s 51.8 9.5 0.00032 31.8 2.9 48 76-123 24-74 (243)
8 3a8g_A NitrIle hydratase subun 51.2 13 0.00045 30.3 3.6 51 73-123 16-67 (207)
9 3eiq_C Programmed cell death p 51.1 16 0.00055 31.1 4.4 46 77-124 51-96 (358)
10 2zu6_B Programmed cell death p 48.2 21 0.00071 29.6 4.5 45 78-124 1-45 (307)
11 2xwv_A Sialic acid-binding per 47.2 7.2 0.00025 31.3 1.5 40 76-115 272-311 (312)
12 3eiq_C Programmed cell death p 45.4 24 0.00084 30.0 4.6 51 72-124 209-259 (358)
13 2c0s_A Conserved domain protei 39.0 43 0.0015 22.2 4.1 35 77-111 11-51 (64)
14 2bzb_A Conserved domain protei 38.8 27 0.00091 23.1 3.0 34 78-111 12-51 (62)
15 3bqs_A Uncharacterized protein 35.6 79 0.0027 22.0 5.3 43 81-124 14-58 (93)
16 2lja_A Putative thiol-disulfid 35.3 25 0.00086 23.5 2.6 23 93-115 129-151 (152)
17 3mab_A Uncharacterized protein 35.0 40 0.0014 23.7 3.6 28 81-108 14-43 (93)
18 3hht_B NitrIle hydratase beta 31.6 67 0.0023 26.1 4.9 33 75-107 72-104 (229)
19 3hht_A NitrIle hydratase alpha 30.1 43 0.0015 27.4 3.5 46 78-123 27-73 (216)
20 3nkz_A Flagellar protein FLIT; 29.8 69 0.0023 23.3 4.3 34 75-108 13-46 (123)
21 1s7z_A Gene 0.3 protein; all h 27.1 73 0.0025 23.8 4.0 52 72-123 4-59 (117)
22 2kuc_A Putative disulphide-iso 25.6 45 0.0015 21.8 2.5 25 91-115 105-129 (130)
23 3a7m_A Flagellar protein FLIT; 24.6 1.6E+02 0.0054 21.3 5.5 53 75-127 10-70 (122)
24 3qyh_A CO-type nitrIle hydrata 23.6 66 0.0023 26.5 3.5 49 75-123 35-84 (226)
25 3h3m_A Flagellar protein FLIT; 22.8 89 0.003 23.0 3.8 36 73-108 21-56 (126)
26 4fm4_A NitrIle hydratase alpha 21.8 57 0.0019 26.6 2.8 43 81-123 14-57 (209)
No 1
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=81.74 E-value=3.1 Score=31.63 Aligned_cols=47 Identities=9% Similarity=0.202 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAY-GLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~-gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
+..+|++.+..+|.|. .. .+++|.+.|.-.||.+.+|..+++-.+..
T Consensus 5 s~ee~~kk~~~ii~EYf~~---~D~~Ea~~~l~eL~~p~~~~~~V~~~I~~ 52 (165)
T 2rg8_A 5 DERAFEKTLTPIIQEYFEH---GDTNEVAEMLRDLNLGEMKSGVPVLAVSL 52 (165)
T ss_dssp SHHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHTCSGGGGHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcC---CCHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 4679999999999985 22 37889999999999999999988877654
No 2
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=80.53 E-value=1.7 Score=31.62 Aligned_cols=48 Identities=10% Similarity=0.120 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
|-.+|++.|..+|.|.= .-.+++|-..|.-.||.+.+|+.+|+-.+..
T Consensus 2 p~eel~kki~~ll~EY~--~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~ 49 (129)
T 2nsz_A 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM 49 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence 66789999999999852 1247899999999999888888766654443
No 3
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=80.07 E-value=1.7 Score=32.64 Aligned_cols=50 Identities=12% Similarity=0.149 Sum_probs=38.9
Q ss_pred chHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 045319 74 DAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125 (149)
Q Consensus 74 DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~ 125 (149)
.|-.+|++.|..+|.|.=- -.+++|-..|.-.||.+.+|+.+|+-.+...
T Consensus 3 ~~~eel~kki~~lL~EY~~--~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~a 52 (152)
T 2ion_A 3 QPVNHLVKEIDMLLKEYLL--SGDISEAEHCLKELEVPHFHHELVYEAIVMV 52 (152)
T ss_dssp CCCCHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHh--CCCHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 5778999999999998521 2478999999999998888877776554443
No 4
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=59.07 E-value=15 Score=30.47 Aligned_cols=51 Identities=12% Similarity=0.131 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 045319 74 DAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIFS 126 (149)
Q Consensus 74 DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~~ 126 (149)
-|-.+|++-|..++.|.-- -.+++|-..|.-.||.+.+|+.+|+-.+....
T Consensus 160 ~~~eelkkki~~lL~EY~~--~~D~~EA~~ci~EL~~p~f~~e~V~~ai~~al 210 (307)
T 2zu6_B 160 QSVNHLVKEIDMLLKEYLL--SGDISEAEHCLKELEVPHFHHELVYEAIIMVL 210 (307)
T ss_dssp SCHHHHHHHHHHHHHHHHH--HCCHHHHHHHHHHHCCGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence 4778999999999999521 13889999999999998888877776555443
No 5
>1ugp_A NitrIle hydratase alpha subunit; complex, N-butyric acid, non-corrin cobalt, hydration, lyase; HET: BUA; 1.63A {Pseudonocardia thermophila} SCOP: d.149.1.1 PDB: 1ire_A 1ugr_A 1ugq_A 1ugs_A
Probab=57.28 E-value=10 Score=30.85 Aligned_cols=51 Identities=12% Similarity=0.242 Sum_probs=42.4
Q ss_pred cchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc-CCCCchhhHHHHHHH
Q 045319 73 EDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM-NKKKNHGIIVGAFID 123 (149)
Q Consensus 73 ~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L-N~~~~H~~Iv~AF~D 123 (149)
..+..++-+-++++..++|+.+.++++.++..|-.- .+..--++|-+|..|
T Consensus 13 ~~~~~~r~~AL~~lL~eKGli~~~~id~~~~~~e~~~gP~nGA~vVArAW~D 64 (203)
T 1ugp_A 13 QKEITARVKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCcccCeeeehhhCC
Confidence 356788889999999999999999999999999998 555556677777665
No 6
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=54.34 E-value=21 Score=29.30 Aligned_cols=47 Identities=13% Similarity=0.214 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAY-GLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~-gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
+-.+|++.|..+|.|. ..+ +++|-+.|.-.||.+.+|+.+|+-....
T Consensus 6 s~ee~~k~~~~ll~Ey~~~~---d~~Ea~~ci~el~~p~~~~~~v~~~i~~ 53 (339)
T 1ug3_A 6 SEEELEKKSKAIIEEYLHLN---DMKEAVQCVQELASPSLLFIFVRHGVES 53 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHTTCCGGGHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCC---CHHHHHHHHHHcCCcccHHHHHHHHHHH
Confidence 4578999999999884 333 5678999999999997777666554443
No 7
>2zzd_C Thiocyanate hydrolase subunit gamma; scnase, cobalt, metalloprotein, sulfenic acid, sulfinic acid, nitrIle hydratase, carbonyl sulfide; HET: FRU TLA BGC; 1.78A {Thiobacillus thioparus} PDB: 2dxc_C* 2dxb_C 2dd5_C* 2dd4_C*
Probab=51.84 E-value=9.5 Score=31.83 Aligned_cols=48 Identities=19% Similarity=0.204 Sum_probs=37.5
Q ss_pred HHHHHH---HHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 045319 76 YSDFRR---SMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFID 123 (149)
Q Consensus 76 y~DFR~---SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~D 123 (149)
..+|-. -++++..++|+.+.++++.++..|-...+..--+++-+|.+|
T Consensus 24 ~~~~~~~~~AL~~lL~eKGli~~~~~~~~~~~~e~~gP~~GArvVArAW~D 74 (243)
T 2zzd_C 24 VSDFEILEMAVRELAIEKGLFSAEDHRVWKDYVHTLGPLPAARLVAKAWLD 74 (243)
T ss_dssp CCHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhccCCCCcceEEEeecCC
Confidence 334444 889999999999999999999999999555555666666554
No 8
>3a8g_A NitrIle hydratase subunit alpha; Fe, iron, lyase, metal-binding, oxidation; 1.11A {Rhodococcus erythropolis} PDB: 3a8h_A 3a8l_A 3a8o_A 2zpb_A 2ahj_A 2cyz_A 2cz6_A 2cz7_A 2d0q_A 2cz1_A 2zpe_A 2zpf_A 2zpg_A 2zph_A 2zpi_A 2qdy_A 3a8m_A 2zcf_A 1ahj_A 2cz0_A*
Probab=51.20 E-value=13 Score=30.32 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=42.1
Q ss_pred cchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc-CCCCchhhHHHHHHH
Q 045319 73 EDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM-NKKKNHGIIVGAFID 123 (149)
Q Consensus 73 ~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L-N~~~~H~~Iv~AF~D 123 (149)
..+..++-+-++++..++|+.+.++++.++..|-.- .+..--++|-+|..|
T Consensus 16 ~~~~~~r~~Al~~ll~ekG~i~~~~~~~~~~~~e~~~~P~~GA~vVArAW~D 67 (207)
T 3a8g_A 16 QAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 67 (207)
T ss_dssp CCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhcccCCccccEEeeehhCC
Confidence 456788999999999999999999999999999998 555555666676554
No 9
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=51.07 E-value=16 Score=31.12 Aligned_cols=46 Identities=9% Similarity=0.197 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 77 SDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 77 ~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
.+|++-...+|.|.= .-.+++|...|.-.||.+.+|..+++-.+..
T Consensus 51 ee~~k~~~~ii~EYf--~~~d~~Ea~~~l~eL~~p~~~~~~v~~~I~~ 96 (358)
T 3eiq_C 51 TAFEKTLTPIIQEYF--EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 96 (358)
T ss_dssp HHHHHHHHHHHHHHH--HHCCHHHHHHHHHTTTCCGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh--cCCCHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 799999999999852 2357889999999999999999988877664
No 10
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=48.17 E-value=21 Score=29.62 Aligned_cols=45 Identities=9% Similarity=0.190 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 78 DFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 78 DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
||++-+..+|.|.= .-.+++|.+.|.=.||.+.+|..+++-.+..
T Consensus 1 e~~k~~~~ii~EYf--~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~ 45 (307)
T 2zu6_B 1 AFEKTLTPIIQEYF--EHGDTNEVAEMLRDLNLGEMKSGVPVLAVSL 45 (307)
T ss_dssp CHHHHHHHHHHHHH--HHCCHHHHHHHHHTTCCGGGGGGHHHHHHHH
T ss_pred ChHHHHHHHHHHHH--cCCCHHHHHHHHHHhCCcchHHHHHHHHHHH
Confidence 58888888888841 1237899999999999999999998876654
No 11
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=47.24 E-value=7.2 Score=31.35 Aligned_cols=40 Identities=18% Similarity=0.189 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchh
Q 045319 76 YSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHG 115 (149)
Q Consensus 76 y~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~ 115 (149)
...||+.+..+..+..-.....-+++|..|...|+.+||+
T Consensus 272 ~~~~~~a~~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 311 (312)
T 2xwv_A 272 LVPFKESMKPYYAEFVKQTGQKGESALKQIEAINPHHHHH 311 (312)
T ss_dssp SHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTSCCSCC--
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhCcccccC
Confidence 4678888888776531111235678999999999998886
No 12
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=45.39 E-value=24 Score=30.01 Aligned_cols=51 Identities=10% Similarity=0.133 Sum_probs=40.3
Q ss_pred CcchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 045319 72 SEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 72 S~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
...|-.++++-|...|.|.= ...+++|-..|.-.||.+.+|+.+|+-.+..
T Consensus 209 ~~~~veelkkki~~lL~EY~--~s~D~~EA~~ci~EL~~p~fhhe~V~~av~~ 259 (358)
T 3eiq_C 209 GQQPVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVM 259 (358)
T ss_dssp SSSCHHHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHCCTTCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhc--cCCCHHHHHHHHHHccCCcchHHHHHHHHHH
Confidence 34689999999999999853 2358899999999999998887777654443
No 13
>2c0s_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=39.02 E-value=43 Score=22.16 Aligned_cols=35 Identities=26% Similarity=0.529 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCCCh------hHHHHHHHHHHHcCCC
Q 045319 77 SDFRRSMEEMVEAYGLKYW------EHLEELLALFLRMNKK 111 (149)
Q Consensus 77 ~DFR~SM~EMI~e~gi~d~------~~LeELL~cYL~LN~~ 111 (149)
+.-|+-|.+.+..+|+.+. .+|-.||..|..+..+
T Consensus 11 E~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (64)
T 2c0s_A 11 EAKKKELIYLVEKYGFTHHKVISFSQELDRLLNLLIELKTK 51 (64)
T ss_dssp HHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3468889999999999875 5788999999986543
No 14
>2bzb_A Conserved domain protein; transferase, phosphatase, phosphorylation, sporulation, antithetical, negative, regulator, spine; NMR {Bacillus anthracis} SCOP: a.30.7.1
Probab=38.79 E-value=27 Score=23.06 Aligned_cols=34 Identities=21% Similarity=0.420 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHcCCCCh------hHHHHHHHHHHHcCCC
Q 045319 78 DFRRSMEEMVEAYGLKYW------EHLEELLALFLRMNKK 111 (149)
Q Consensus 78 DFR~SM~EMI~e~gi~d~------~~LeELL~cYL~LN~~ 111 (149)
.-|+-|.+.+..+|+.++ .+|-.||..|..+..+
T Consensus 12 ~kR~eL~~l~~k~Gl~~~~vI~~SQeLD~LIn~Y~k~~~~ 51 (62)
T 2bzb_A 12 NKKKELIQLVARHGLDHDKVLLFSRDLDKLINKFMNVKDK 51 (62)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 458889999999998764 5788999999998754
No 15
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=35.56 E-value=79 Score=22.02 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=32.8
Q ss_pred HHHHHHHHHcCCCChhHHHHH--HHHHHHcCCCCchhhHHHHHHHH
Q 045319 81 RSMEEMVEAYGLKYWEHLEEL--LALFLRMNKKKNHGIIVGAFIDI 124 (149)
Q Consensus 81 ~SM~EMI~e~gi~d~~~LeEL--L~cYL~LN~~~~H~~Iv~AF~Dl 124 (149)
..|++|...-||.+.++|+++ ..+|+.|-.......+ ..|-.+
T Consensus 14 ~~~e~~L~~vGI~s~e~L~~~Ga~~ay~rL~~~~~~~c~-~~L~aL 58 (93)
T 3bqs_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRIWENDSSVCM-SELYAL 58 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHTTCTTCCH-HHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHHHHHCCCCCH-HHHHHH
Confidence 468999999999999999987 7889999876444333 444444
No 16
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=35.26 E-value=25 Score=23.47 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.2
Q ss_pred CChhHHHHHHHHHHHcCCCCchh
Q 045319 93 KYWEHLEELLALFLRMNKKKNHG 115 (149)
Q Consensus 93 ~d~~~LeELL~cYL~LN~~~~H~ 115 (149)
.+.++|+++|..++..|...||+
T Consensus 129 ~~~~~l~~~l~~~~~~~~~~~~~ 151 (152)
T 2lja_A 129 PSDPKTAEKFNELLGLEGHHHHH 151 (152)
T ss_dssp TTCHHHHHHHHHHHTCCSSSSSC
T ss_pred CCHHHHHHHHHHHhccccccccC
Confidence 45789999999999999998885
No 17
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=35.00 E-value=40 Score=23.67 Aligned_cols=28 Identities=25% Similarity=0.383 Sum_probs=24.9
Q ss_pred HHHHHHHHHcCCCChhHHHHH--HHHHHHc
Q 045319 81 RSMEEMVEAYGLKYWEHLEEL--LALFLRM 108 (149)
Q Consensus 81 ~SM~EMI~e~gi~d~~~LeEL--L~cYL~L 108 (149)
..|++|...-||.+.++|+++ ..||+.|
T Consensus 14 ~~~e~~L~~~GI~t~~~Lr~~Ga~~ay~rL 43 (93)
T 3mab_A 14 KVLEQDLIKAGIKTPVELKDVGSKEAFLRI 43 (93)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHhCCHHHHHHHH
Confidence 468999999999999999998 7889887
No 18
>3hht_B NitrIle hydratase beta subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: b.34.4.4 PDB: 2dpp_B 1v29_B
Probab=31.61 E-value=67 Score=26.07 Aligned_cols=33 Identities=15% Similarity=0.203 Sum_probs=30.6
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLR 107 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~ 107 (149)
=|+-....|+.|++++|+.+.++|.+...-||.
T Consensus 72 YYe~WL~ale~lLvekGvit~~EL~~r~~~~~~ 104 (229)
T 3hht_B 72 YYGHWIATVAYNLVDTGVLDEKELDERTEVFSK 104 (229)
T ss_dssp HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhcc
Confidence 378888999999999999999999999999996
No 19
>3hht_A NitrIle hydratase alpha subunit; alpha and beta proteins (A+B), lyase; 1.16A {Geobacillus pallidus} SCOP: d.149.1.1 PDB: 2dpp_A 1v29_A
Probab=30.06 E-value=43 Score=27.44 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHcCCCChhHHHHHHHHHHHc-CCCCchhhHHHHHHH
Q 045319 78 DFRRSMEEMVEAYGLKYWEHLEELLALFLRM-NKKKNHGIIVGAFID 123 (149)
Q Consensus 78 DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L-N~~~~H~~Iv~AF~D 123 (149)
.--+-++++..++|+.+.+.++.++..|-.- .+..--++|-+|..|
T Consensus 27 ~r~~Al~~ll~ekg~i~~~~~~~~~~~~e~~~gP~~GArVVAKAW~D 73 (216)
T 3hht_A 27 ARAKALESLLIEKGHLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 73 (216)
T ss_dssp HHHHHHHHHHHHTTSCCHHHHHHHHHHHHTTCCTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 3446788899999999999999999999754 566666777777655
No 20
>3nkz_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MC midwest center for structural genomics; HET: MSE PG4; 2.11A {Yersinia enterocolitica subsp}
Probab=29.82 E-value=69 Score=23.33 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM 108 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L 108 (149)
=|..--..-.+|++.-.-.+|+.|-+|=..|+.+
T Consensus 13 ~Y~~il~lS~~ML~aA~~gdWD~Lv~lE~~y~~l 46 (123)
T 3nkz_A 13 EYQQILTLSEQMLVLATEGNWDALVDLEMTYLKA 46 (123)
T ss_dssp HHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 3666777778999999999999999999999864
No 21
>1s7z_A Gene 0.3 protein; all helical, gene regulation; 1.83A {Enterobacteria phage T7} SCOP: a.159.3.1 PDB: 2y7c_D
Probab=27.08 E-value=73 Score=23.75 Aligned_cols=52 Identities=12% Similarity=0.110 Sum_probs=42.0
Q ss_pred CcchHHHHHHHHHHHHHH----cCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 045319 72 SEDAYSDFRRSMEEMVEA----YGLKYWEHLEELLALFLRMNKKKNHGIIVGAFID 123 (149)
Q Consensus 72 S~DPy~DFR~SM~EMI~e----~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~D 123 (149)
|..-|.+.-.+-.||..+ -.|++-+++.+-|.---.-|-|.+-+-|..+|++
T Consensus 4 sn~ty~~l~a~a~e~l~e~Ir~d~i~~~DD~~D~iHe~ad~~VP~yy~diFsVmA~ 59 (117)
T 1s7z_A 4 SNMTYNNVFDHAYEMLKENIRYDDIRDTDDLHDAIHMAADNAVPHYYADIFSVMAS 59 (117)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTTCCCGGGCHHHHHHHHHHHSCCSHHHHHHHHTS
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHhccCCcchhhhHHhhhhc
Confidence 556677777777777766 4899999999999999999999999999888864
No 22
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=25.59 E-value=45 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.112 Sum_probs=17.1
Q ss_pred CCCChhHHHHHHHHHHHcCCCCchh
Q 045319 91 GLKYWEHLEELLALFLRMNKKKNHG 115 (149)
Q Consensus 91 gi~d~~~LeELL~cYL~LN~~~~H~ 115 (149)
|..+.++|++.|.-++.=|...+|+
T Consensus 105 G~~~~~~l~~~l~~~~~~~~~~~~~ 129 (130)
T 2kuc_A 105 GAEDAPELLKKVKLGVESEGHHHHH 129 (130)
T ss_dssp SCCCHHHHHHHHHHHHSCCC-----
T ss_pred CCCCHHHHHHHHHHHHHhccccccC
Confidence 4457889999999999999888885
No 23
>3a7m_A Flagellar protein FLIT; UP-DOWN helix bundle, bacterial flagellum biogenesis, chaper cytoplasm, repressor, transcription; 3.20A {Salmonella typhimurium}
Probab=24.60 E-value=1.6e+02 Score=21.34 Aligned_cols=53 Identities=11% Similarity=0.098 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc--------CCCCchhhHHHHHHHHHhh
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM--------NKKKNHGIIVGAFIDIFSQ 127 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L--------N~~~~H~~Iv~AF~Dl~~~ 127 (149)
=|..-..--.+|+++-.-.+|+.|-+|=.-|+.+ -+......+..-+.+++..
T Consensus 10 ~Yq~i~~lS~~ML~aA~~gdWD~Lv~lE~~y~~~Ve~l~~~~~~~~l~~~~~~~~~~lL~~ 70 (122)
T 3a7m_A 10 RWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSIETVMEKQTPPGITRSIQDMVAGYIKQ 70 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH
Confidence 4667777778999998889999999999999875 2334455555555555443
No 24
>3qyh_A CO-type nitrIle hydratase alpha subunit; cobalt, cysteine sulfinic acid, lyase; 2.00A {Pseudomonas putida} PDB: 3qyg_A 3qxe_A 3qz9_A 3qz5_A
Probab=23.61 E-value=66 Score=26.50 Aligned_cols=49 Identities=10% Similarity=0.216 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHH-cCCCCchhhHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLR-MNKKKNHGIIVGAFID 123 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~-LN~~~~H~~Iv~AF~D 123 (149)
++..--+-++++..++|+.+.+.++.++..|-. +.+..-=++|-+|.+|
T Consensus 35 ~~~~r~~Al~~lL~eKG~i~~~~~~~~~~~~e~~~gP~nGArVVAKAW~D 84 (226)
T 3qyh_A 35 DIALRVKALESLLIEKGLVDPAAMDLVVQTYEHKVGPRNGAKVVAKAWVD 84 (226)
T ss_dssp THHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchhhhhhhhhCC
Confidence 355556788999999999999999999999975 4666666777787665
No 25
>3h3m_A Flagellar protein FLIT; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, flagellum; 2.50A {Bordetella bronchiseptica}
Probab=22.79 E-value=89 Score=22.95 Aligned_cols=36 Identities=14% Similarity=0.258 Sum_probs=30.6
Q ss_pred cchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc
Q 045319 73 EDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM 108 (149)
Q Consensus 73 ~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L 108 (149)
-+=|..--..-.+|+++-.-.+|+.|=+|=..|+.+
T Consensus 21 l~~Yq~Il~lS~~ML~aA~~gdWD~Lv~lE~~y~~l 56 (126)
T 3h3m_A 21 LEIYQDIANLTSRMLAAANASNWDLVLNHGQEYVCL 56 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence 455777777888999999999999999999999853
No 26
>4fm4_A NitrIle hydratase alpha subunit; iron type hydratase, hydrolysis, sulfinic acid, lyase; 2.38A {Comamonas testosteroni}
Probab=21.76 E-value=57 Score=26.61 Aligned_cols=43 Identities=9% Similarity=0.147 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCChhHHHHHHHHHHHcC-CCCchhhHHHHHHH
Q 045319 81 RSMEEMVEAYGLKYWEHLEELLALFLRMN-KKKNHGIIVGAFID 123 (149)
Q Consensus 81 ~SM~EMI~e~gi~d~~~LeELL~cYL~LN-~~~~H~~Iv~AF~D 123 (149)
+-++.+..++|+.+.+.+++++..|-.-= +..--++|-+|.+|
T Consensus 14 ~ALe~lL~eKGli~~~~id~~~~~~~~~~gP~~GA~vVArAW~D 57 (209)
T 4fm4_A 14 DALFVLTKELGLVTDQTVPDYEDALMHDWLPQNGAKLVAKAWTD 57 (209)
T ss_dssp HHHHHHHHHTTSCCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccchhHHHHHhCC
Confidence 56778888999999999999999998533 33334566777665
Done!