Query 045319
Match_columns 149
No_of_seqs 134 out of 221
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 21:25:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045319.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045319hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2nsza1 a.118.1.14 (A:322-450) 79.9 0.48 3.5E-05 32.9 2.5 49 75-125 2-50 (129)
2 d1ug3a1 a.118.1.14 (A:1235-142 65.3 5 0.00037 28.9 5.2 46 77-125 7-53 (193)
3 d1ugpa_ d.149.1.1 (A:) Cobalt- 57.6 3.5 0.00026 31.6 3.2 44 80-123 20-64 (203)
4 d1v29a_ d.149.1.1 (A:) Cobalt- 52.2 3.7 0.00027 31.5 2.4 50 74-123 10-63 (203)
5 d2qdya1 d.149.1.1 (A:10-206) I 49.3 7.2 0.00052 29.7 3.7 52 72-123 6-58 (197)
6 d2eiaa1 a.28.3.1 (A:148-222) E 30.6 39 0.0028 21.1 4.6 38 72-112 10-51 (75)
7 d1v29b_ b.34.4.4 (B:) Cobalt-c 28.6 46 0.0033 25.0 5.4 41 74-114 71-111 (229)
8 d2i5ha1 e.71.1.1 (A:16-195) Hy 25.1 9.4 0.00069 28.5 0.7 23 80-102 125-147 (180)
9 d3c8ya2 d.15.4.2 (A:1-126) Fe- 21.9 66 0.0048 21.8 4.8 46 60-106 64-117 (126)
10 d1yt3a2 a.60.8.3 (A:295-375) R 21.6 80 0.0058 19.5 4.8 51 76-126 9-77 (81)
No 1
>d2nsza1 a.118.1.14 (A:322-450) Programmed cell death 4, PDCD4 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=79.89 E-value=0.48 Score=32.92 Aligned_cols=49 Identities=10% Similarity=0.118 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 045319 75 AYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125 (149)
Q Consensus 75 Py~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~ 125 (149)
|-..+++.|..||.|.- .-.+++|...|.-.||.+.+|+.+|+-.+...
T Consensus 2 pv~~l~kk~~~ll~EY~--~~~D~~Ea~~~l~eL~~p~~~~e~V~~~i~~a 50 (129)
T d2nsza1 2 PVNHLVKEIDMLLKEYL--LSGDISEAEHCLKELEVPHFHHELVYEAIVMV 50 (129)
T ss_dssp CCCHHHHHHHHHHHHHH--HHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH--hCCCHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 44568999999999853 34567888999999999988877776555443
No 2
>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}
Probab=65.28 E-value=5 Score=28.90 Aligned_cols=46 Identities=13% Similarity=0.214 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHc-CCCChhHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 045319 77 SDFRRSMEEMVEAY-GLKYWEHLEELLALFLRMNKKKNHGIIVGAFIDIF 125 (149)
Q Consensus 77 ~DFR~SM~EMI~e~-gi~d~~~LeELL~cYL~LN~~~~H~~Iv~AF~Dl~ 125 (149)
+||++-+..+|.|. ..+ ++.|...|.-.||.+.+|..+|...+...
T Consensus 7 ee~~kk~~~il~Ey~~~~---D~~Ea~~~l~el~~p~~~~~~V~~~i~~~ 53 (193)
T d1ug3a1 7 EELEKKSKAIIEEYLHLN---DMKEAVQCVQELASPSLLFIFVRHGVEST 53 (193)
T ss_dssp HHHHHHHHHHHHHHHHHC---CHHHHHHHHHTTCCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCC---CHHHHHHHHHHcCCchhHHHHHHHHHHHH
Confidence 68999999999883 333 67888999999999988887777665543
No 3
>d1ugpa_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Pseudonocardia thermophila [TaxId: 1848]}
Probab=57.57 E-value=3.5 Score=31.63 Aligned_cols=44 Identities=14% Similarity=0.311 Sum_probs=37.9
Q ss_pred HHHHHHHHHHcCCCChhHHHHHHHHHHH-cCCCCchhhHHHHHHH
Q 045319 80 RRSMEEMVEAYGLKYWEHLEELLALFLR-MNKKKNHGIIVGAFID 123 (149)
Q Consensus 80 R~SM~EMI~e~gi~d~~~LeELL~cYL~-LN~~~~H~~Iv~AF~D 123 (149)
-+-+++...++|+.+.+++.+++..|-. +.+..--++|-+|.+|
T Consensus 20 vkAle~lLieKGli~~~~id~~ie~~e~~vgP~~GArVVARAW~D 64 (203)
T d1ugpa_ 20 VKALESMLIEQGILTTSMIDRMAEIYENEVGPHLGAKVVVKAWTD 64 (203)
T ss_dssp HHHHHHHHHHTTSCCHHHHHHHHHHHHHTSSHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCcchHHHHHHHhCC
Confidence 4567888889999999999999999997 6777777888888776
No 4
>d1v29a_ d.149.1.1 (A:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=52.18 E-value=3.7 Score=31.52 Aligned_cols=50 Identities=12% Similarity=0.232 Sum_probs=40.2
Q ss_pred chHHHH---HHHHHHHHHHcCCCChhHHHHHHHHHHH-cCCCCchhhHHHHHHH
Q 045319 74 DAYSDF---RRSMEEMVEAYGLKYWEHLEELLALFLR-MNKKKNHGIIVGAFID 123 (149)
Q Consensus 74 DPy~DF---R~SM~EMI~e~gi~d~~~LeELL~cYL~-LN~~~~H~~Iv~AF~D 123 (149)
.|..|| -+.+++...++|+.+.+++++.+..|-. +++..-=++|-+|.+|
T Consensus 10 ~~~s~~e~rv~ALe~LLieKGlit~~~id~~ie~~e~~vgP~nGArvVARAW~D 63 (203)
T d1v29a_ 10 RPQSFWEARAKALESLLIEKRLLSSDAIERVIKHYEHELGPMNGAKVVAKAWTD 63 (203)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTTCCTHHHHHHHHHHTTC
T ss_pred CCcchHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhccCCccHHHHHHHHhcC
Confidence 355554 4678888889999999999999999997 5777777788887655
No 5
>d2qdya1 d.149.1.1 (A:10-206) Iron-containing nitrile hydratase {Rhodococcus erythropolis [TaxId: 1833]}
Probab=49.31 E-value=7.2 Score=29.67 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=43.1
Q ss_pred CcchHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHc-CCCCchhhHHHHHHH
Q 045319 72 SEDAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRM-NKKKNHGIIVGAFID 123 (149)
Q Consensus 72 S~DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~L-N~~~~H~~Iv~AF~D 123 (149)
..+|..+=-+.++++..++|+.+.+++...+..|-.= .+..--++|-+|.+|
T Consensus 6 ~~~~i~~RvkALe~lLieKGli~~~~vd~~ie~~e~~vgP~nGArvVAkAW~D 58 (197)
T d2qdya1 6 AQAPVSDRAWALFRALDGKGLVPDGYVEGWKKTFEEDFSPRRGAELVARAWTD 58 (197)
T ss_dssp CCCCHHHHHHHHHHHHHTTTCSCTTHHHHHHHHHHHTSCHHHHHHHHHHHHHC
T ss_pred ccccHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHhhccCCcchHHHHHHHhCC
Confidence 4568888889999999999999999999999999876 455556677777665
No 6
>d2eiaa1 a.28.3.1 (A:148-222) EIAV capsid protein p26 {Equine infectious anemia virus [TaxId: 11665]}
Probab=30.63 E-value=39 Score=21.10 Aligned_cols=38 Identities=13% Similarity=0.295 Sum_probs=27.5
Q ss_pred CcchHHHHHHHHHHHHHHcCC----CChhHHHHHHHHHHHcCCCC
Q 045319 72 SEDAYSDFRRSMEEMVEAYGL----KYWEHLEELLALFLRMNKKK 112 (149)
Q Consensus 72 S~DPy~DFR~SM~EMI~e~gi----~d~~~LeELL~cYL~LN~~~ 112 (149)
..+||+||...+.+-++..-. +.| ..+.| +|-+.|+..
T Consensus 10 pkEpf~dfVdRl~~a~~~~~~~~~~k~~-~~~~L--~~qNANpdC 51 (75)
T d2eiaa1 10 AKEPYPEFVDRLLSQIKSEGHPQEISKF-LTDTL--TIQNANEEC 51 (75)
T ss_dssp TTCCHHHHHHHHHHHHHHTTCCHHHHHH-HHHHH--HHHTSCTTT
T ss_pred CCCCHHHHHHHHHHHHHhhcCcHhHHHH-HHHHH--hHhcCCHHH
Confidence 478999999999999988643 344 33333 588888765
No 7
>d1v29b_ b.34.4.4 (B:) Cobalt-containing nitrile hydratase {Bacillus smithii [TaxId: 1479]}
Probab=28.63 E-value=46 Score=24.95 Aligned_cols=41 Identities=15% Similarity=0.157 Sum_probs=34.8
Q ss_pred chHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHcCCCCch
Q 045319 74 DAYSDFRRSMEEMVEAYGLKYWEHLEELLALFLRMNKKKNH 114 (149)
Q Consensus 74 DPy~DFR~SM~EMI~e~gi~d~~~LeELL~cYL~LN~~~~H 114 (149)
+=|+-+...|+.++.++|+.+.++|++-...+..--....|
T Consensus 71 sYYe~Wl~ale~lLvekG~it~~EL~~r~~~~~a~p~~~~~ 111 (229)
T d1v29b_ 71 SYYGHWIATVAYNLLETGVLDEKELEDRTQAFMEKPDTKIQ 111 (229)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCTTCCCC
T ss_pred CHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhcccCCccccc
Confidence 45788899999999999999999999999999886544443
No 8
>d2i5ha1 e.71.1.1 (A:16-195) Hypothetical protein AF1531 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=25.09 E-value=9.4 Score=28.47 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCChhHHHHHH
Q 045319 80 RRSMEEMVEAYGLKYWEHLEELL 102 (149)
Q Consensus 80 R~SM~EMI~e~gi~d~~~LeELL 102 (149)
++-|.+||++++-..|+.+++|=
T Consensus 125 kk~~~~iveeR~~~~f~sf~dl~ 147 (180)
T d2i5ha1 125 KKMMWAIIEERKKRPFESFEDIA 147 (180)
T ss_dssp HHHHHHHHHHHHHSCCCSHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHH
Confidence 57899999999888888888874
No 9
>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}
Probab=21.91 E-value=66 Score=21.83 Aligned_cols=46 Identities=9% Similarity=-0.029 Sum_probs=33.3
Q ss_pred CCCcceEEEEeeCcchHHHHHHHHHHHHHHcCCCC--------hhHHHHHHHHHH
Q 045319 60 FQFKDCVALAIDSEDAYSDFRRSMEEMVEAYGLKY--------WEHLEELLALFL 106 (149)
Q Consensus 60 ~~~~~svAVvk~S~DPy~DFR~SM~EMI~e~gi~d--------~~~LeELL~cYL 106 (149)
.++.+++.|...|.. -.+.|+.+.|++.+++-.| -=+|+++..-|=
T Consensus 64 t~v~~GM~V~T~s~~-v~~~Rr~~le~ll~~H~~dC~~C~~~g~CeLq~~~~~yg 117 (126)
T d3c8ya2 64 TLIEDGMIINTNSDA-VNEKIKSRISQLLDIHEFKCGPCNRRENCEFLKLVIKYK 117 (126)
T ss_dssp CBCCTTCEEESSCHH-HHHHHHHHHHHHHTTSCCCCTTCTTTTSCHHHHHHHHHT
T ss_pred cCCCCCCEEEeCCHH-HHHHHHHHHHHHHhcCCCcCCCCCCCCCcHHHHHHHHHC
Confidence 567888888777665 5689999999998864322 227888877664
No 10
>d1yt3a2 a.60.8.3 (A:295-375) Ribonuclease D {Escherichia coli [TaxId: 562]}
Probab=21.55 E-value=80 Score=19.48 Aligned_cols=51 Identities=12% Similarity=0.346 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHH----HHcCC-----CChhHHHHHHHHHHHcCCCCc---------hhhHHHHHHHHHh
Q 045319 76 YSDFRRSMEEMV----EAYGL-----KYWEHLEELLALFLRMNKKKN---------HGIIVGAFIDIFS 126 (149)
Q Consensus 76 y~DFR~SM~EMI----~e~gi-----~d~~~LeELL~cYL~LN~~~~---------H~~Iv~AF~Dl~~ 126 (149)
|+.--+.|.+.| +++|| ..-.+||+||.|+...++..- +.+|...+.+++.
T Consensus 9 yK~~~K~lk~~v~~~Ae~~~IapelLaskkdle~ll~~~~~~~~~~~~P~ll~GWR~elvg~~l~~lL~ 77 (81)
T d1yt3a2 9 YRKAFKAIKSLITDVSETHKISAELLASRRQINQLLNWHWKLKPQNNLPELISGWRGELMAEALHNLLQ 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHHTTCSCCSSCCGGGSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHhcCHHHHHHHHHHHHhcCCCcCCCHHHhhhhHHHHHHHHHHHHh
Confidence 444444455444 44677 689999999999988764332 2345555555544
Done!