BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045321
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
Length = 220
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 45/94 (47%), Gaps = 5/94 (5%)
Query: 296 SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVG 355
+K++ + ++ ++ + L++ L + + L L+ L L+ N ++ CVG
Sbjct: 67 NKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSN-----RITCVG 121
Query: 356 SSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESL 389
+ SF L+ + L S+Y T+ GA L SL
Sbjct: 122 NDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155
>pdb|2XQ1|A Chain A, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|B Chain B, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|C Chain C, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|D Chain D, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|E Chain E, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|F Chain F, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|G Chain G, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|H Chain H, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|I Chain I, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|J Chain J, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|K Chain K, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|L Chain L, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|M Chain M, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|N Chain N, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|O Chain O, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
pdb|2XQ1|P Chain P, Crystal Structure Of Peroxisomal Catalase From The Yeast
Hansenula Polymorpha
Length = 509
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 204 PSLLCTILNL---QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNL 260
PS C I + Q+ ++P S D L +W + +FG TL PKNY + + +
Sbjct: 267 PSWECYIQTMTLEQSKKLPFSVFD--LTKVWPHKDFPLRHFGRFTLNENPKNYYAETEQI 324
Query: 261 IF 262
F
Sbjct: 325 AF 326
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 311 SLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370
SL L L N +L + P +KL L+ LKL N +++ S KL +L L+
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL--KRVPEGAFDSLEKLKMLQLQEN 215
Query: 371 YWQ 373
W
Sbjct: 216 PWD 218
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 296 SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVG 355
++L+ + L + L L L +L P + ++L +L+ L+L N +L +
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-----QLQSIP 147
Query: 356 SSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESL 389
+ +F KLT L S+ ++ GA +L L
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 43/94 (45%), Gaps = 5/94 (5%)
Query: 296 SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVG 355
++L+ + L + L L L +L P + ++L +L+ L+L N +L +
Sbjct: 93 NQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN-----QLQSIP 147
Query: 356 SSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESL 389
+ +F KLT L S+ ++ GA +L L
Sbjct: 148 AGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,087,281
Number of Sequences: 62578
Number of extensions: 347326
Number of successful extensions: 720
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 717
Number of HSP's gapped (non-prelim): 11
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)