Query 045321
Match_columns 397
No_of_seqs 303 out of 3297
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 12:06:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045321.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045321hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 2.3E-45 5E-50 374.2 16.6 381 4-394 397-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 5.4E-34 1.2E-38 304.8 20.3 368 4-397 422-906 (1153)
3 PLN00113 leucine-rich repeat r 99.9 2.8E-22 6E-27 213.9 16.3 224 163-393 138-365 (968)
4 PLN00113 leucine-rich repeat r 99.9 2.6E-22 5.6E-27 214.1 14.2 224 114-346 117-368 (968)
5 KOG0444 Cytoskeletal regulator 99.8 3.1E-23 6.7E-28 195.6 -4.6 272 114-397 54-375 (1255)
6 PLN03210 Resistant to P. syrin 99.8 2.4E-18 5.1E-23 184.9 15.6 268 114-397 588-943 (1153)
7 KOG0444 Cytoskeletal regulator 99.8 3.7E-21 8.1E-26 181.6 -6.4 265 114-391 31-323 (1255)
8 KOG0472 Leucine-rich repeat pr 99.7 2.5E-20 5.3E-25 167.7 -12.3 243 134-395 65-308 (565)
9 KOG4194 Membrane glycoprotein 99.7 1.3E-18 2.8E-23 163.4 -2.2 171 114-294 124-302 (873)
10 KOG4194 Membrane glycoprotein 99.7 7.2E-17 1.6E-21 151.8 4.7 151 135-294 76-230 (873)
11 KOG0472 Leucine-rich repeat pr 99.6 2.1E-19 4.6E-24 161.8 -13.4 238 139-394 47-285 (565)
12 KOG0617 Ras suppressor protein 99.6 1.4E-17 3.1E-22 133.6 -6.3 168 134-320 30-200 (264)
13 KOG0618 Serine/threonine phosp 99.5 5.6E-16 1.2E-20 152.9 -4.2 264 114-395 218-487 (1081)
14 KOG0617 Ras suppressor protein 99.5 1.7E-16 3.7E-21 127.5 -7.8 166 158-332 27-194 (264)
15 PRK15370 E3 ubiquitin-protein 99.4 2.2E-13 4.8E-18 138.3 9.5 95 166-269 200-294 (754)
16 PRK15370 E3 ubiquitin-protein 99.4 1.4E-13 3.1E-18 139.7 7.4 179 137-345 199-378 (754)
17 PRK15387 E3 ubiquitin-protein 99.4 9.8E-13 2.1E-17 133.1 11.9 219 138-395 223-456 (788)
18 KOG4658 Apoptotic ATPase [Sign 99.4 1.1E-12 2.4E-17 135.3 11.3 255 134-397 520-842 (889)
19 cd00116 LRR_RI Leucine-rich re 99.4 8.3E-14 1.8E-18 130.0 -0.6 61 309-370 220-288 (319)
20 KOG0618 Serine/threonine phosp 99.3 1.5E-13 3.2E-18 136.1 -2.7 191 138-346 46-276 (1081)
21 PRK15387 E3 ubiquitin-protein 99.3 4E-11 8.7E-16 121.6 14.4 218 115-371 222-456 (788)
22 cd00116 LRR_RI Leucine-rich re 99.3 2.5E-13 5.4E-18 126.8 -1.5 234 158-395 16-289 (319)
23 KOG4237 Extracellular matrix p 99.2 2.5E-13 5.3E-18 122.8 -4.4 127 136-268 66-198 (498)
24 KOG4237 Extracellular matrix p 99.2 1.3E-12 2.8E-17 118.2 -0.8 124 114-242 66-196 (498)
25 COG4886 Leucine-rich repeat (L 99.1 2.5E-10 5.5E-15 109.8 7.2 179 158-346 110-289 (394)
26 KOG0532 Leucine-rich repeat (L 99.0 5.8E-12 1.3E-16 118.9 -5.6 126 162-294 118-243 (722)
27 KOG0532 Leucine-rich repeat (L 98.9 7.7E-11 1.7E-15 111.5 -2.8 171 162-342 95-268 (722)
28 COG4886 Leucine-rich repeat (L 98.9 1.4E-09 3.1E-14 104.6 5.3 178 134-324 113-291 (394)
29 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.3E-14 91.6 2.9 102 164-268 18-123 (175)
30 PF14580 LRR_9: Leucine-rich r 98.8 4.7E-09 1E-13 87.7 5.0 124 134-264 16-146 (175)
31 KOG3207 Beta-tubulin folding c 98.8 1.5E-09 3.2E-14 99.9 1.6 201 186-391 119-333 (505)
32 KOG1259 Nischarin, modulator o 98.8 8.8E-10 1.9E-14 96.8 -0.2 126 188-322 284-411 (490)
33 KOG2120 SCF ubiquitin ligase, 98.7 2.3E-10 5E-15 100.3 -5.4 66 305-372 309-375 (419)
34 KOG3207 Beta-tubulin folding c 98.7 2.4E-09 5.2E-14 98.5 0.9 39 309-347 300-339 (505)
35 KOG1259 Nischarin, modulator o 98.7 2.9E-09 6.2E-14 93.6 -0.4 131 208-347 281-412 (490)
36 KOG1909 Ran GTPase-activating 98.6 6.5E-09 1.4E-13 93.2 0.1 90 134-223 27-132 (382)
37 KOG2982 Uncharacterized conser 98.5 3.8E-08 8.2E-13 86.6 2.8 208 158-390 64-285 (418)
38 PLN03150 hypothetical protein; 98.5 2.2E-07 4.7E-12 94.2 8.7 102 190-295 420-525 (623)
39 PF13855 LRR_8: Leucine rich r 98.5 9.3E-08 2E-12 65.6 3.1 56 166-221 2-59 (61)
40 PF13855 LRR_8: Leucine rich r 98.4 2.8E-07 6E-12 63.2 3.3 57 188-245 1-59 (61)
41 KOG1909 Ran GTPase-activating 98.3 1.8E-07 4E-12 84.1 1.4 62 309-371 240-309 (382)
42 PLN03150 hypothetical protein; 98.3 2.5E-06 5.3E-11 86.6 9.6 102 166-268 419-525 (623)
43 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.9E-11 55.1 3.5 38 189-226 2-39 (44)
44 PF12799 LRR_4: Leucine Rich r 98.2 1.3E-06 2.9E-11 55.1 3.1 41 165-205 1-41 (44)
45 KOG0531 Protein phosphatase 1, 98.1 3.2E-07 6.9E-12 88.8 -1.1 104 162-268 92-196 (414)
46 PRK15386 type III secretion pr 98.1 7.7E-06 1.7E-10 77.0 7.7 134 162-320 49-187 (426)
47 KOG2120 SCF ubiquitin ligase, 98.1 4.9E-08 1.1E-12 85.9 -7.1 81 138-221 186-270 (419)
48 KOG0531 Protein phosphatase 1, 98.1 4.2E-07 9.1E-12 87.9 -2.0 126 163-295 70-196 (414)
49 PRK15386 type III secretion pr 98.0 2.6E-05 5.5E-10 73.5 9.5 161 184-373 48-213 (426)
50 KOG4341 F-box protein containi 98.0 1.2E-07 2.7E-12 87.0 -6.5 256 134-395 161-437 (483)
51 KOG3665 ZYG-1-like serine/thre 97.9 1.2E-05 2.6E-10 81.8 5.6 127 114-245 121-260 (699)
52 KOG3665 ZYG-1-like serine/thre 97.9 7.8E-06 1.7E-10 83.1 3.7 130 134-268 119-260 (699)
53 KOG4579 Leucine-rich repeat (L 97.8 4.5E-06 9.8E-11 65.4 0.5 89 162-251 50-139 (177)
54 KOG4341 F-box protein containi 97.8 4.5E-07 9.8E-12 83.4 -6.4 58 284-341 293-353 (483)
55 KOG4579 Leucine-rich repeat (L 97.7 2.8E-06 6E-11 66.6 -2.5 104 164-268 26-133 (177)
56 COG5238 RNA1 Ran GTPase-activa 97.4 0.00016 3.5E-09 63.4 3.7 228 162-393 27-312 (388)
57 KOG1859 Leucine-rich repeat pr 97.4 2.2E-06 4.7E-11 84.2 -8.6 98 167-268 166-264 (1096)
58 KOG2982 Uncharacterized conser 97.3 5.2E-05 1.1E-09 67.2 -0.6 116 277-395 138-260 (418)
59 KOG1859 Leucine-rich repeat pr 97.2 2.7E-05 5.8E-10 76.8 -3.8 98 136-242 186-287 (1096)
60 KOG1644 U2-associated snRNP A' 97.1 0.00084 1.8E-08 56.5 5.0 52 190-242 44-96 (233)
61 KOG2123 Uncharacterized conser 96.9 6.4E-05 1.4E-09 66.0 -3.0 101 134-241 16-124 (388)
62 KOG1644 U2-associated snRNP A' 96.7 0.0031 6.6E-08 53.2 5.4 100 165-266 42-148 (233)
63 KOG2739 Leucine-rich acidic nu 96.4 0.0019 4.1E-08 56.5 2.2 91 162-254 62-162 (260)
64 KOG1947 Leucine rich repeat pr 96.3 0.00047 1E-08 68.0 -2.2 134 158-293 181-329 (482)
65 PF00560 LRR_1: Leucine Rich R 96.2 0.0015 3.3E-08 34.3 0.3 15 191-205 3-17 (22)
66 COG5238 RNA1 Ran GTPase-activa 96.1 0.0088 1.9E-07 52.8 4.8 40 162-201 89-133 (388)
67 KOG2123 Uncharacterized conser 95.9 0.00043 9.2E-09 61.0 -4.0 82 162-246 16-99 (388)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.5E-08 32.9 1.0 21 212-232 1-21 (22)
69 KOG1947 Leucine rich repeat pr 95.9 0.0004 8.6E-09 68.5 -5.2 110 186-297 186-307 (482)
70 KOG2739 Leucine-rich acidic nu 95.9 0.0036 7.9E-08 54.8 1.3 86 162-250 40-131 (260)
71 PF13504 LRR_7: Leucine rich r 94.5 0.025 5.5E-07 27.5 1.4 15 189-203 2-16 (17)
72 PF13504 LRR_7: Leucine rich r 94.4 0.024 5.2E-07 27.5 1.2 16 212-227 2-17 (17)
73 KOG3864 Uncharacterized conser 94.2 0.007 1.5E-07 51.1 -1.6 80 260-342 103-184 (221)
74 KOG3864 Uncharacterized conser 94.2 0.003 6.4E-08 53.2 -3.9 83 312-395 103-187 (221)
75 PF13306 LRR_5: Leucine rich r 93.7 0.23 4.9E-06 39.1 6.3 78 161-242 31-111 (129)
76 KOG0473 Leucine-rich repeat pr 93.4 0.0022 4.8E-08 55.2 -6.0 81 162-242 39-119 (326)
77 smart00369 LRR_TYP Leucine-ric 91.7 0.15 3.3E-06 27.7 1.9 19 188-206 2-20 (26)
78 smart00370 LRR Leucine-rich re 91.7 0.15 3.3E-06 27.7 1.9 19 188-206 2-20 (26)
79 smart00370 LRR Leucine-rich re 90.3 0.25 5.5E-06 26.8 2.0 20 210-229 1-20 (26)
80 smart00369 LRR_TYP Leucine-ric 90.3 0.25 5.5E-06 26.8 2.0 20 210-229 1-20 (26)
81 KOG0473 Leucine-rich repeat pr 89.3 0.013 2.8E-07 50.6 -5.5 86 182-268 36-121 (326)
82 PF13306 LRR_5: Leucine rich r 88.4 1.5 3.2E-05 34.3 6.0 111 115-236 12-128 (129)
83 smart00367 LRR_CC Leucine-rich 83.4 0.58 1.3E-05 25.4 0.9 14 383-396 1-14 (26)
84 smart00364 LRR_BAC Leucine-ric 79.3 1.3 2.8E-05 24.1 1.3 17 189-205 3-19 (26)
85 PF13516 LRR_6: Leucine Rich r 69.4 0.34 7.3E-06 25.7 -2.6 14 310-323 2-15 (24)
86 smart00365 LRR_SD22 Leucine-ri 66.1 5.1 0.00011 21.8 1.7 14 188-201 2-15 (26)
87 smart00368 LRR_RI Leucine rich 47.9 15 0.00033 20.1 1.7 12 189-200 3-14 (28)
88 KOG3763 mRNA export factor TAP 42.5 7.3 0.00016 38.4 -0.3 12 309-320 243-254 (585)
89 PF14162 YozD: YozD-like prote 35.2 48 0.001 21.2 2.5 28 45-72 23-52 (57)
90 PF07725 LRR_3: Leucine Rich R 34.5 28 0.0006 17.7 1.2 16 190-205 2-17 (20)
91 PF15385 SARG: Specifically an 30.8 24 0.00052 34.7 1.1 16 10-25 7-22 (497)
92 PRK04841 transcriptional regul 26.1 2E+02 0.0043 30.9 7.3 73 11-98 260-332 (903)
93 KOG4308 LRR-containing protein 23.4 5.1 0.00011 39.5 -5.0 79 164-242 203-298 (478)
94 PF13730 HTH_36: Helix-turn-he 23.1 2.1E+02 0.0045 18.1 4.4 52 13-70 2-55 (55)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-45 Score=374.25 Aligned_cols=381 Identities=23% Similarity=0.310 Sum_probs=292.5
Q ss_pred ccc-cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCC----C-CHHHHHHHHHHHHHhCCceeeEecCC
Q 045321 4 ILS-RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQ----Y-NSEETAEHYLKELIHRGFFQVSKRRA 77 (397)
Q Consensus 4 il~-L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~----~-~~~~~~~~~~~~L~~~~ll~~~~~~~ 77 (397)
|++ |++|||.||.++|.||+|||+|||||+|++++||.+|+||||+. | ++++.|+.|+.+|+.+++++.....
T Consensus 397 i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~- 475 (889)
T KOG4658|consen 397 ILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE- 475 (889)
T ss_pred hHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc-
Confidence 456 79999999988999999999999999999999999999999997 3 8899999999999999999987754
Q ss_pred CCceeEEEeCHHHHHHHHHHhc-----cCCeEEecCCC-----CCC-CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEe
Q 045321 78 GGTIKACYVPSLVYYSLLLVAE-----KTRFVLMPDKE-----EES-LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNH 145 (397)
Q Consensus 78 ~~~~~~~~mhdli~dl~~~~~~-----~~~~~~~~~~~-----~~~-~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~ 145 (397)
++...|+|||+|+|||.++|. +++.+...+.. +.. +..+|++++. +........ ..+++|++|.+.
T Consensus 476 -~~~~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~-~~~~~~~~~~~~~~~L~tLll~ 553 (889)
T KOG4658|consen 476 -GRKETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLM-NNKIEHIAGSSENPKLRTLLLQ 553 (889)
T ss_pred -cceeEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEe-ccchhhccCCCCCCccceEEEe
Confidence 566889999999999999998 66655443211 111 6789999999 555555555 777799999999
Q ss_pred CCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCc-c
Q 045321 146 SSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSS-Y 222 (397)
Q Consensus 146 ~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~ 222 (397)
.+... ...+ ..+|..++.|||||+++|. +.++|++|++|.+||||+++++.++.+|.++++|..|++|++..+ .
T Consensus 554 ~n~~~---l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 554 RNSDW---LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred ecchh---hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 88630 1144 6777999999999999877 789999999999999999999999999999999999999999999 6
Q ss_pred cccchhhhhccccCcEEEecCCCC---CCCCCccccCCCCCcEEEcCCCee-------------------eEE---eccH
Q 045321 223 VDHSLEDIWMMQKLMHLNFGSITL---PAPPKNYSSSLKNLIFISALNPNL-------------------SCY---HSGV 277 (397)
Q Consensus 223 l~~lp~~~~~L~~L~~L~l~~~~~---~~~~p~~i~~l~~L~~l~l~~~~L-------------------~i~---~~~~ 277 (397)
+..+|.....|++||+|.+. ... .......+.++++|+.+....+.. .+. ....
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~-~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~ 709 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLP-RSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTL 709 (889)
T ss_pred cccccchhhhcccccEEEee-ccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccccccee
Confidence 66666667779999999997 432 112223345566666655443211 000 2344
Q ss_pred HhhhcCCCCCcEEEeecCCCee----------EEE----e---------------ccCCCCCCceEEEEecccCCCCCcc
Q 045321 278 SNSLLGLHKLECLKLVNESKLS----------RVV----L---------------SKYQFPLSLSHLSLSNTELMQDPMP 328 (397)
Q Consensus 278 ~~~l~~l~~L~~L~l~~~~~L~----------~L~----l---------------~~~~~l~~L~~L~L~~~~l~~~~~~ 328 (397)
+.++..+.+|+.|.+..|...+ .+. + |... +|+|+.|.+..|...+.+++
T Consensus 710 ~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f-~~~L~~l~l~~~~~~e~~i~ 788 (889)
T KOG4658|consen 710 ISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLF-APHLTSLSLVSCRLLEDIIP 788 (889)
T ss_pred ecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhc-cCcccEEEEecccccccCCC
Confidence 5566778889999988863211 110 0 3333 88999999999987777888
Q ss_pred ccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECC----Cccccccccccccc
Q 045321 329 IMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA----GAMPKLESLIVNPC 394 (397)
Q Consensus 329 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~----~~~p~L~~L~i~~C 394 (397)
....+..++.+.+..+.+.+..+... .++|+++..+.+... .+++|.+.. +.+|.+..+.|.+|
T Consensus 789 ~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~l~~i~~~~l~~~-~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 789 KLKALLELKELILPFNKLEGLRMLCS-LGGLPQLYWLPLSFL-KLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred HHHHhhhcccEEecccccccceeeec-CCCCceeEecccCcc-chhheehhcCcccccCccccccceecc
Confidence 88778878777776666666544455 677888777777763 377776665 67888888888886
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=5.4e-34 Score=304.75 Aligned_cols=368 Identities=18% Similarity=0.132 Sum_probs=235.1
Q ss_pred ccc-cccccccchh-hhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCce
Q 045321 4 ILS-RTCSVWELSF-HLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTI 81 (397)
Q Consensus 4 il~-L~lSY~~L~~-~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~ 81 (397)
|.+ |++|||+|++ ..|.||++|||||.++.+ +.+..|+|.+.+. ++..++.|+++||++...
T Consensus 422 I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~---~~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~------- 485 (1153)
T PLN03210 422 IEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKV---NDIKLLLANSDLD------VNIGLKNLVDKSLIHVRE------- 485 (1153)
T ss_pred HHHHHHHhhhccCccchhhhhheehhhcCCCCH---HHHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------
Confidence 445 7999999987 499999999999998654 3467788776552 344589999999998743
Q ss_pred eEEEeCHHHHHHHHHHhccCC-------eEEecCC------CCCCCCCeEEEEEEeCccchh--hcc--CCCCCeeEEEE
Q 045321 82 KACYVPSLVYYSLLLVAEKTR-------FVLMPDK------EEESLANVKRCFILEDLIEFI--FLE--QSGMYLQSFLN 144 (397)
Q Consensus 82 ~~~~mhdli~dl~~~~~~~~~-------~~~~~~~------~~~~~~~~r~L~l~~~~~~~~--~~~--~~~~~Lr~L~~ 144 (397)
..++|||++++||+++++++. +.....+ ......+++++++......+. ... ..+++|+.|.+
T Consensus 486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~ 565 (1153)
T PLN03210 486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF 565 (1153)
T ss_pred CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence 358999999999999997653 1111000 000045677776653222221 111 56777777766
Q ss_pred eCCCCcc--------------------------ccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC
Q 045321 145 HSSESDH--------------------------LALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP 198 (397)
Q Consensus 145 ~~~~~~~--------------------------~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~ 198 (397)
....... .+...++..| .+++|++|++.++.++.+|..+..+++|++|+++++
T Consensus 566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~ 644 (1153)
T PLN03210 566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGS 644 (1153)
T ss_pred ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCC
Confidence 5432100 0011222221 356788888888888888888888899999999876
Q ss_pred C-CcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCe------
Q 045321 199 S-LKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPN------ 269 (397)
Q Consensus 199 ~-i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~------ 269 (397)
. ++.+|. ++.+++|++|++++| .+..+|..++++++|+.|+++ +|. ...+|..+ ++++|+.+++++|.
T Consensus 645 ~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~-~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p 721 (1153)
T PLN03210 645 KNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMS-RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP 721 (1153)
T ss_pred CCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCC-CCCCcCccCCcC-CCCCCCEEeCCCCCCccccc
Confidence 4 677774 788899999999988 788899889999999999998 774 66677665 67777777777651
Q ss_pred --------eeEE---eccHHhhhcCC-------------------------------CCCcEEEeecCCCeeEEEeccCC
Q 045321 270 --------LSCY---HSGVSNSLLGL-------------------------------HKLECLKLVNESKLSRVVLSKYQ 307 (397)
Q Consensus 270 --------L~i~---~~~~~~~l~~l-------------------------------~~L~~L~l~~~~~L~~L~l~~~~ 307 (397)
|.+. ...+|..+ .+ ++|+.|++++|+.+..++.+++.
T Consensus 722 ~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~ 800 (1153)
T PLN03210 722 DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN 800 (1153)
T ss_pred cccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhC
Confidence 1111 01111110 01 12333333333222222223333
Q ss_pred CCCCceEEEEecccCCCCCccccccC---------------------cCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321 308 FPLSLSHLSLSNTELMQDPMPIMEKL---------------------PRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH 366 (397)
Q Consensus 308 ~l~~L~~L~L~~~~l~~~~~~~l~~l---------------------~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 366 (397)
+++|+.|++++|......+ ....+ ++|+.|+|+++.+ ..++.. ...+++|+.|+
T Consensus 801 -L~~L~~L~Ls~C~~L~~LP-~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i--~~iP~s-i~~l~~L~~L~ 875 (1153)
T PLN03210 801 -LHKLEHLEIENCINLETLP-TGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI--EEVPWW-IEKFSNLSFLD 875 (1153)
T ss_pred -CCCCCEEECCCCCCcCeeC-CCCCccccCEEECCCCCccccccccccccCEeECCCCCC--ccChHH-HhcCCCCCEEE
Confidence 4555555555543211111 11133 3455555544433 233444 67789999999
Q ss_pred EecCCCcCcEEECCCccccccccccccccCC
Q 045321 367 LKSMYWQDEWTMGAGAMPKLESLIVNPCAYL 397 (397)
Q Consensus 367 l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~L 397 (397)
+.+|++++.++.....+++|+.+++.+|++|
T Consensus 876 L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L 906 (1153)
T PLN03210 876 MNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906 (1153)
T ss_pred CCCCCCcCccCcccccccCCCeeecCCCccc
Confidence 9999999999888888999999999999875
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.8e-22 Score=213.86 Aligned_cols=224 Identities=23% Similarity=0.281 Sum_probs=123.2
Q ss_pred CCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCccc-ccchhhhhccccCcEE
Q 045321 163 KFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYV-DHSLEDIWMMQKLMHL 239 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l-~~lp~~~~~L~~L~~L 239 (397)
.+++|++|++++|.+. .+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|
T Consensus 138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 217 (968)
T PLN00113 138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWI 217 (968)
T ss_pred ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEE
Confidence 4455566666666554 55666666677777777666653 5666666677777777766633 3456666667777777
Q ss_pred EecCCCCC-CCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEe
Q 045321 240 NFGSITLP-APPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLS 318 (397)
Q Consensus 240 ~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~ 318 (397)
+++ ++.. ..+|..++++++|+.+++++|.+ ...++..++.+++|+.|+++++.-...++-++.. +++|++|+++
T Consensus 218 ~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~l---~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~Ls 292 (968)
T PLN00113 218 YLG-YNNLSGEIPYEIGGLTSLNHLDLVYNNL---TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS-LQKLISLDLS 292 (968)
T ss_pred ECc-CCccCCcCChhHhcCCCCCEEECcCcee---ccccChhHhCCCCCCEEECcCCeeeccCchhHhh-ccCcCEEECc
Confidence 776 5543 35666667777777777766655 3456666667777777776653111111112233 4555555555
Q ss_pred cccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccc
Q 045321 319 NTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNP 393 (397)
Q Consensus 319 ~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~ 393 (397)
+|.+....+..++++++|+.|++++|...+.. +.. ...+++|+.|++.++.-...++...+.+++|+.|++++
T Consensus 293 ~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~-~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 293 DNSLSGEIPELVIQLQNLEILHLFSNNFTGKI-PVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred CCeeccCCChhHcCCCCCcEEECCCCccCCcC-Chh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 55554444444555555555555444433221 222 34455555555555432223333333444455544443
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.88 E-value=2.6e-22 Score=214.10 Aligned_cols=224 Identities=21% Similarity=0.204 Sum_probs=155.2
Q ss_pred CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~ 192 (397)
..++|++.+..+......+...+++|++|.+.++.... .++..+..+++|++|++++|.+. .+|..++++++|++
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 192 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEF 192 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCe
Confidence 44566666653322222222456677777777665532 33443488888888888888865 77888888888888
Q ss_pred EecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcCCCe
Q 045321 193 LKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALNPN 269 (397)
Q Consensus 193 L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~ 269 (397)
|++++|.+. .+|..++++++|++|++++|.+. .+|..++++++|++|+++ +|.. ..+|..++++++|+.+++++|.
T Consensus 193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLV-YNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECc-CceeccccChhHhCCCCCCEEECcCCe
Confidence 888888765 67888888888888888888544 678888888888888888 7653 3677778888888888888876
Q ss_pred eeEEeccHHhhhcCCCCCcEEEeecC-------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCC
Q 045321 270 LSCYHSGVSNSLLGLHKLECLKLVNE-------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQD 325 (397)
Q Consensus 270 L~i~~~~~~~~l~~l~~L~~L~l~~~-------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~ 325 (397)
+ ....+.++..+++|+.|++++| ++|+.|.+ ++.. +++|+.|++++|.+...
T Consensus 272 l---~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~ 347 (968)
T PLN00113 272 L---SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTS-LPRLQVLQLWSNKFSGE 347 (968)
T ss_pred e---eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhc-CCCCCEEECcCCCCcCc
Confidence 6 4566777777777888777664 24444444 2334 66777777777766555
Q ss_pred CccccccCcCCceEEEecccc
Q 045321 326 PMPIMEKLPRLQVLKLKQNSY 346 (397)
Q Consensus 326 ~~~~l~~l~~L~~L~L~~~~~ 346 (397)
.+..++.+++|+.|++++|..
T Consensus 348 ~p~~l~~~~~L~~L~Ls~n~l 368 (968)
T PLN00113 348 IPKNLGKHNNLTVLDLSTNNL 368 (968)
T ss_pred CChHHhCCCCCcEEECCCCee
Confidence 555666677777777755544
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=3.1e-23 Score=195.57 Aligned_cols=272 Identities=19% Similarity=0.182 Sum_probs=172.3
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCc
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLK 191 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~ 191 (397)
..++.|+++.-+....+.-. ..++.||++++..+... +..+ +++ -.++.|.+|||++|++.+.|..+..-+++-
T Consensus 54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~i 129 (1255)
T KOG0444|consen 54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSI 129 (1255)
T ss_pred HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcE
Confidence 45566666662333332223 67777777777766654 3344 455 567777777777777777777777777777
Q ss_pred eEecCCCCCcccCccc-cCCCCCcEEecCCcccccchhhhhccccCcEEEecC-----------------------CCC-
Q 045321 192 HLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS-----------------------ITL- 246 (397)
Q Consensus 192 ~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~-----------------------~~~- 246 (397)
.|++++|+|+++|.++ -+|+.|-+||+++|.+..+|+.+.+|..|+.|.+++ ++.
T Consensus 130 VLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR 209 (1255)
T KOG0444|consen 130 VLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR 209 (1255)
T ss_pred EEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence 7777777777776543 356666667777666666666666666666666651 221
Q ss_pred -CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCC
Q 045321 247 -PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQD 325 (397)
Q Consensus 247 -~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~ 325 (397)
...+|.++..|.+|..++++.|.| ..+|+.+.++++|+.|++++ ..+++|....+. ..+|+.|+++.|++ ..
T Consensus 210 Tl~N~Ptsld~l~NL~dvDlS~N~L----p~vPecly~l~~LrrLNLS~-N~iteL~~~~~~-W~~lEtLNlSrNQL-t~ 282 (1255)
T KOG0444|consen 210 TLDNIPTSLDDLHNLRDVDLSENNL----PIVPECLYKLRNLRRLNLSG-NKITELNMTEGE-WENLETLNLSRNQL-TV 282 (1255)
T ss_pred hhhcCCCchhhhhhhhhccccccCC----CcchHHHhhhhhhheeccCc-CceeeeeccHHH-Hhhhhhhccccchh-cc
Confidence 344566666667777777776655 56788888888888888887 456666553333 44555555655554 33
Q ss_pred CccccccCcCCceEEEecccccCceeEE----------------------eCCCCCCCCCEEEEecCCCcCcEEECCCcc
Q 045321 326 PMPIMEKLPRLQVLKLKQNSYLGRKLAC----------------------VGSSSFPKLTVLHLKSMYWQDEWTMGAGAM 383 (397)
Q Consensus 326 ~~~~l~~l~~L~~L~L~~~~~~~~~~~~----------------------~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~ 383 (397)
.+..+..++.|+.|.+.+|...-+.+++ .|...+++|+.|.++. +.+..+|....-+
T Consensus 283 LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~-NrLiTLPeaIHlL 361 (1255)
T KOG0444|consen 283 LPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDH-NRLITLPEAIHLL 361 (1255)
T ss_pred chHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccc-cceeechhhhhhc
Confidence 4444555555555555333332222222 2356677788888874 5577777777788
Q ss_pred ccccccccccccCC
Q 045321 384 PKLESLIVNPCAYL 397 (397)
Q Consensus 384 p~L~~L~i~~C~~L 397 (397)
|.|+.|+++..|+|
T Consensus 362 ~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 362 PDLKVLDLRENPNL 375 (1255)
T ss_pred CCcceeeccCCcCc
Confidence 99999999888875
No 6
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=2.4e-18 Score=184.93 Aligned_cols=268 Identities=19% Similarity=0.154 Sum_probs=156.5
Q ss_pred CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccccccCCCCCc
Q 045321 114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPLGLENLILLK 191 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~~~~~l~~L~ 191 (397)
+.++|.+.+........+....+.+|+.|.+.++... .+ ..+ ..+++|++|+++++. +..+|. ++.+++|+
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~-----~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLE-----KLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCcccc-----cccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 4567777776332223222245566777776665543 23 233 556666666666554 444443 55566666
Q ss_pred eEecCCCC-CcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCC---------------------CCC
Q 045321 192 HLKLNIPS-LKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSIT---------------------LPA 248 (397)
Q Consensus 192 ~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~---------------------~~~ 248 (397)
+|++++|. +.++|.+++++++|+.|++++| .+..+|..+ ++++|+.|+++ +| ...
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls-gc~~L~~~p~~~~nL~~L~L~~n~i~ 738 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS-GCSRLKSFPDISTNISWLDLDETAIE 738 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC-CCCCccccccccCCcCeeecCCCccc
Confidence 66666543 5566666666666666666666 555565544 45555555555 44 223
Q ss_pred CCCccccCCC-------------------------------CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321 249 PPKNYSSSLK-------------------------------NLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK 297 (397)
Q Consensus 249 ~~p~~i~~l~-------------------------------~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~ 297 (397)
.+|..+ .++ +|+.+++++|.. ...+|.+++.+++|+.|++++|++
T Consensus 739 ~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~---l~~lP~si~~L~~L~~L~Ls~C~~ 814 (1153)
T PLN03210 739 EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPS---LVELPSSIQNLHKLEHLEIENCIN 814 (1153)
T ss_pred cccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCCCC---ccccChhhhCCCCCCEEECCCCCC
Confidence 333321 122 344444444322 345778888888888888888765
Q ss_pred eeEEEecc-------------------CCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCC
Q 045321 298 LSRVVLSK-------------------YQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSS 358 (397)
Q Consensus 298 L~~L~l~~-------------------~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 358 (397)
++.++... ...+.+|+.|+|++|.+ ...+..++.+++|+.|+++++. ....++.. ...
T Consensus 815 L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i-~~iP~si~~l~~L~~L~L~~C~-~L~~l~~~-~~~ 891 (1153)
T PLN03210 815 LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI-EEVPWWIEKFSNLSFLDMNGCN-NLQRVSLN-ISK 891 (1153)
T ss_pred cCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC-ccChHHHhcCCCCCEEECCCCC-CcCccCcc-ccc
Confidence 55543211 11134566666666665 3455678889999999996533 23334555 678
Q ss_pred CCCCCEEEEecCCCcCcEEECC-------------CccccccccccccccCC
Q 045321 359 FPKLTVLHLKSMYWQDEWTMGA-------------GAMPKLESLIVNPCAYL 397 (397)
Q Consensus 359 ~~~L~~L~l~~~~~l~~~~~~~-------------~~~p~L~~L~i~~C~~L 397 (397)
+++|+.+.+.+|+++..++... ..+|....+.+.+|.+|
T Consensus 892 L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L 943 (1153)
T PLN03210 892 LKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNL 943 (1153)
T ss_pred ccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCC
Confidence 9999999999999987654321 13455556677788765
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.77 E-value=3.7e-21 Score=181.63 Aligned_cols=265 Identities=18% Similarity=0.122 Sum_probs=184.1
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc--cccccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD--QFPLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~--~lp~~~~~l~~ 189 (397)
+..++++.+......+++.. ..+.+|+.|.+..+... .+ .++ +.++.||.+++..|++. .+|..|..+..
T Consensus 31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~d 104 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKD 104 (1255)
T ss_pred hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhccccc
Confidence 66788888884455565666 88999999999888765 45 566 89999999999999987 78999999999
Q ss_pred CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321 190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~ 268 (397)
|..|++++|++++.|..+..-+++-+|++++|++..+|.. +.+|+.|-.|+++ ++....+|+.+.++.+|+++.+++|
T Consensus 105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS-~NrLe~LPPQ~RRL~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLS-NNRLEMLPPQIRRLSMLQTLKLSNN 183 (1255)
T ss_pred ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccc-cchhhhcCHHHHHHhhhhhhhcCCC
Confidence 9999999999999999999999999999999999999987 7789999999999 9999999999999999999999998
Q ss_pred eeeEEeccHHhhhcCCCCCcEEEeecCC-CeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccccc
Q 045321 269 NLSCYHSGVSNSLLGLHKLECLKLVNES-KLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL 347 (397)
Q Consensus 269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~~-~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 347 (397)
.| ...-...+..+++|+.|++++.. .+..++-.+.. +.||..++++.|.+ ...+..+-.+++|+.|+|++|.+.
T Consensus 184 PL---~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~-l~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~it 258 (1255)
T KOG0444|consen 184 PL---NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDD-LHNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKIT 258 (1255)
T ss_pred hh---hHHHHhcCccchhhhhhhcccccchhhcCCCchhh-hhhhhhccccccCC-CcchHHHhhhhhhheeccCcCcee
Confidence 44 11222334455666677777631 11111112222 44444444444443 233333444444444444443331
Q ss_pred C---------------------ceeEEeCCCCCCCCCEEEEecCC-CcCcEEECCCcccccccccc
Q 045321 348 G---------------------RKLACVGSSSFPKLTVLHLKSMY-WQDEWTMGAGAMPKLESLIV 391 (397)
Q Consensus 348 ~---------------------~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~p~L~~L~i 391 (397)
. ..++.. ...+++|+.|.+.+.+ ..+.+|.+.|.+..|+.+..
T Consensus 259 eL~~~~~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~a 323 (1255)
T KOG0444|consen 259 ELNMTEGEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHA 323 (1255)
T ss_pred eeeccHHHHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHh
Confidence 1 122333 4455666666655432 23455666666655555543
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.69 E-value=2.5e-20 Score=167.73 Aligned_cols=243 Identities=20% Similarity=0.219 Sum_probs=179.5
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
..+..+.++.+..+... .+ +++ ..+..+..|+.+++++.++|+.++.+..|+.++.+.+.++++|++++.+..
T Consensus 65 ~nL~~l~vl~~~~n~l~-----~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~ 138 (565)
T KOG0472|consen 65 KNLACLTVLNVHDNKLS-----QLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLD 138 (565)
T ss_pred hcccceeEEEeccchhh-----hCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhh
Confidence 66777777777777654 44 555 777778888888888888888888888888888888888888888888888
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEe
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKL 292 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l 292 (397)
|+.++..++++..+|.+++.+.+|..+++. ++...++|+..-+|+.|+.+++..|-+ +.+|..++.+.+|+.|++
T Consensus 139 l~dl~~~~N~i~slp~~~~~~~~l~~l~~~-~n~l~~l~~~~i~m~~L~~ld~~~N~L----~tlP~~lg~l~~L~~LyL 213 (565)
T KOG0472|consen 139 LEDLDATNNQISSLPEDMVNLSKLSKLDLE-GNKLKALPENHIAMKRLKHLDCNSNLL----ETLPPELGGLESLELLYL 213 (565)
T ss_pred hhhhhccccccccCchHHHHHHHHHHhhcc-ccchhhCCHHHHHHHHHHhcccchhhh----hcCChhhcchhhhHHHHh
Confidence 888888888888888888888888888888 777777777766688888887776644 677888888888888887
Q ss_pred ecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCC
Q 045321 293 VNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYW 372 (397)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 372 (397)
.. ..++.++ .|+. +..|++|.+..|++...+.....+++++..|++..|... +.+.. +.-+.+|++|++++. .
T Consensus 214 ~~-Nki~~lP-ef~g-cs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk--e~Pde-~clLrsL~rLDlSNN-~ 286 (565)
T KOG0472|consen 214 RR-NKIRFLP-EFPG-CSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK--EVPDE-ICLLRSLERLDLSNN-D 286 (565)
T ss_pred hh-cccccCC-CCCc-cHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc--cCchH-HHHhhhhhhhcccCC-c
Confidence 76 4555555 5666 777777777777764444444557777777777655542 33344 556677777777763 4
Q ss_pred cCcEEECCCcccccccccccccc
Q 045321 373 QDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 373 l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+..+|...|.+ +|+.|.+.|-|
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred cccCCcccccc-eeeehhhcCCc
Confidence 67777777777 77777766654
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.69 E-value=1.3e-18 Score=163.39 Aligned_cols=171 Identities=17% Similarity=0.140 Sum_probs=94.9
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch--hHHhcCCCeeEEEEcCCCCccccc-ccccCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC--ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLI 188 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l--~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~ 188 (397)
...+.+|.+..+....+-.+ ..++.||+|+++.+.+. .+ +.+ ..-.+++.|+|++|.|+.+- ..+..+.
T Consensus 124 sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is-----~i~~~sf-p~~~ni~~L~La~N~It~l~~~~F~~ln 197 (873)
T KOG4194|consen 124 SGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLIS-----EIPKPSF-PAKVNIKKLNLASNRITTLETGHFDSLN 197 (873)
T ss_pred ccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhh-----cccCCCC-CCCCCceEEeeccccccccccccccccc
Confidence 55577777773333332222 56677777777766554 22 222 44456677777777766442 4556666
Q ss_pred CCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEc
Q 045321 189 LLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISA 265 (397)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l 265 (397)
+|..|.|+.|+++.+|.- +++|++|+.|+|..|.++.+ .-.+..|++|+.|.+. .+.+..+-++ +-.|.+++++++
T Consensus 198 sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklq-rN~I~kL~DG~Fy~l~kme~l~L 276 (873)
T KOG4194|consen 198 SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQ-RNDISKLDDGAFYGLEKMEHLNL 276 (873)
T ss_pred hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhh-hcCcccccCcceeeecccceeec
Confidence 667777777777766643 34477777777766655544 2345566666666665 5544444444 233555555555
Q ss_pred CCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321 266 LNPNLSCYHSGVSNSLLGLHKLECLKLVN 294 (397)
Q Consensus 266 ~~~~L~i~~~~~~~~l~~l~~L~~L~l~~ 294 (397)
..|.+ ..--..++-+++.|+.|+++.
T Consensus 277 ~~N~l---~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 277 ETNRL---QAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred ccchh---hhhhcccccccchhhhhccch
Confidence 55433 122223444455555555544
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.65 E-value=7.2e-17 Score=151.83 Aligned_cols=151 Identities=17% Similarity=0.129 Sum_probs=91.5
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLP-SLLCTILN 212 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 212 (397)
-.+..++|.++++... ++ ..+|.++++|+.+++..|.++.+|...+...||+.|+|.+|.|.++. +++..++.
T Consensus 76 lp~~t~~LdlsnNkl~-----~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 76 LPSQTQTLDLSNNKLS-----HIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPA 150 (873)
T ss_pred Cccceeeeeccccccc-----cCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhh
Confidence 3456677777777654 33 44457777777777777777777776666667777777777766543 34556666
Q ss_pred CcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321 213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L 290 (397)
|++|||+.|.+.++|.. +..-.++++|+++ ++.+..+- ..+..+.+|-++.+++|.+ ..--+.+++++++|+.|
T Consensus 151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La-~N~It~l~~~~F~~lnsL~tlkLsrNri---ttLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLA-SNRITTLETGHFDSLNSLLTLKLSRNRI---TTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhchhhcccCCCCCCCCCceEEeec-cccccccccccccccchheeeecccCcc---cccCHHHhhhcchhhhh
Confidence 77777777766666543 4444566777776 55544332 2355556666666666644 22222345556666665
Q ss_pred Eeec
Q 045321 291 KLVN 294 (397)
Q Consensus 291 ~l~~ 294 (397)
++..
T Consensus 227 dLnr 230 (873)
T KOG4194|consen 227 DLNR 230 (873)
T ss_pred hccc
Confidence 5543
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.64 E-value=2.1e-19 Score=161.77 Aligned_cols=238 Identities=19% Similarity=0.190 Sum_probs=201.1
Q ss_pred eeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEe
Q 045321 139 LQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLE 217 (397)
Q Consensus 139 Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 217 (397)
+..+++..+... .+ +++ .++..|.||++.++.+..+|++++.+..++.++.+++++.++|+.++.+.+|..|+
T Consensus 47 l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~ 120 (565)
T KOG0472|consen 47 LQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD 120 (565)
T ss_pred hhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence 445556665543 44 777 89999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321 218 MPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK 297 (397)
Q Consensus 218 l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~ 297 (397)
.+++.+.++|++++.+..|..++.. ++....+|++++++.+|..+.+.++++ .++++..-.++.|++|+... .-
T Consensus 121 ~s~n~~~el~~~i~~~~~l~dl~~~-~N~i~slp~~~~~~~~l~~l~~~~n~l----~~l~~~~i~m~~L~~ld~~~-N~ 194 (565)
T KOG0472|consen 121 CSSNELKELPDSIGRLLDLEDLDAT-NNQISSLPEDMVNLSKLSKLDLEGNKL----KALPENHIAMKRLKHLDCNS-NL 194 (565)
T ss_pred ccccceeecCchHHHHhhhhhhhcc-ccccccCchHHHHHHHHHHhhccccch----hhCCHHHHHHHHHHhcccch-hh
Confidence 9999999999999999999999998 888999999999999999999988876 56666665699999988765 45
Q ss_pred eeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEE
Q 045321 298 LSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWT 377 (397)
Q Consensus 298 L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 377 (397)
|+.++-.++. +.+|..|++..|.+ ..++.|..+..|++|+++.|.+.. ++..-...+++|..|++.+. +++++|
T Consensus 195 L~tlP~~lg~-l~~L~~LyL~~Nki--~~lPef~gcs~L~Elh~g~N~i~~--lpae~~~~L~~l~vLDLRdN-klke~P 268 (565)
T KOG0472|consen 195 LETLPPELGG-LESLELLYLRRNKI--RFLPEFPGCSLLKELHVGENQIEM--LPAEHLKHLNSLLVLDLRDN-KLKEVP 268 (565)
T ss_pred hhcCChhhcc-hhhhHHHHhhhccc--ccCCCCCccHHHHHHHhcccHHHh--hHHHHhcccccceeeecccc-ccccCc
Confidence 6666656777 88999999999986 455689999999999996666532 22221457899999999985 699999
Q ss_pred ECCCccccccccccccc
Q 045321 378 MGAGAMPKLESLIVNPC 394 (397)
Q Consensus 378 ~~~~~~p~L~~L~i~~C 394 (397)
.+..-+.+|++|++++-
T Consensus 269 de~clLrsL~rLDlSNN 285 (565)
T KOG0472|consen 269 DEICLLRSLERLDLSNN 285 (565)
T ss_pred hHHHHhhhhhhhcccCC
Confidence 98888899999998864
No 12
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-17 Score=133.65 Aligned_cols=168 Identities=19% Similarity=0.260 Sum_probs=139.0
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
..+++...|.++.+... .+ +.+ ..+++|++|++++|+|+++|.+++.+++||.|++.-|++..+|..++.++.
T Consensus 30 f~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~ 103 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA 103 (264)
T ss_pred cchhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence 45566666666666553 34 666 889999999999999999999999999999999999999999999999999
Q ss_pred CcEEecCCc--ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321 213 LQTLEMPSS--YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~--~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L 290 (397)
|++||++++ +-..+|..+-.|..|+-|+++ .+.-..+|+.+|++++||.+.+.++.| -.+|..++.+..|++|
T Consensus 104 levldltynnl~e~~lpgnff~m~tlralyl~-dndfe~lp~dvg~lt~lqil~lrdndl----l~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLG-DNDFEILPPDVGKLTNLQILSLRDNDL----LSLPKEIGDLTRLREL 178 (264)
T ss_pred hhhhhccccccccccCCcchhHHHHHHHHHhc-CCCcccCChhhhhhcceeEEeeccCch----hhCcHHHHHHHHHHHH
Confidence 999999998 455688888889999999998 887888999999999999999988755 6688899999999999
Q ss_pred EeecCCCeeEEEeccCCCCCCceEEEEecc
Q 045321 291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNT 320 (397)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~ 320 (397)
++.+ ..|+.+ +|-|..|++.++
T Consensus 179 hiqg-nrl~vl-------ppel~~l~l~~~ 200 (264)
T KOG0617|consen 179 HIQG-NRLTVL-------PPELANLDLVGN 200 (264)
T ss_pred hccc-ceeeec-------Chhhhhhhhhhh
Confidence 9987 455555 555666666555
No 13
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=5.6e-16 Score=152.92 Aligned_cols=264 Identities=19% Similarity=0.207 Sum_probs=166.8
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~ 192 (397)
....+++....+... .... ....+++++.++.+... .++++...+.+|..++..+|.+..+|..+.....|++
T Consensus 218 g~~l~~L~a~~n~l~-~~~~~p~p~nl~~~dis~n~l~-----~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~ 291 (1081)
T KOG0618|consen 218 GPSLTALYADHNPLT-TLDVHPVPLNLQYLDISHNNLS-----NLPEWIGACANLEALNANHNRLVALPLRISRITSLVS 291 (1081)
T ss_pred CcchheeeeccCcce-eeccccccccceeeecchhhhh-----cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHH
Confidence 345555555522222 1222 56677777877777664 4566668888888888888888888888888888888
Q ss_pred EecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccc-cCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCe
Q 045321 193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQ-KLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPN 269 (397)
Q Consensus 193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~-~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~ 269 (397)
|+...|.++.+|+..+.+++|++|++..+++..+|+.+ ..+. +|+.|+.+ .+.....|.. =..+..|+.|++.+|.
T Consensus 292 l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s-~n~l~~lp~~~e~~~~~Lq~LylanN~ 370 (1081)
T KOG0618|consen 292 LSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVS-SNKLSTLPSYEENNHAALQELYLANNH 370 (1081)
T ss_pred HHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhh-hccccccccccchhhHHHHHHHHhcCc
Confidence 88888888888888888888888888888888888752 2222 36666655 4444444421 1225566667777776
Q ss_pred eeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 270 LSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 270 L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
| .+.....+..+++|+.|+++. ..|.+++- .+.+ ++.|++|+|++|++. ..+..+..++.|++|..-+|+.
T Consensus 371 L---td~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~k-le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l-- 442 (1081)
T KOG0618|consen 371 L---TDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRK-LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL-- 442 (1081)
T ss_pred c---cccchhhhccccceeeeeecc-cccccCCHHHHhc-hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce--
Confidence 6 566777778888888888876 33444332 2334 666777777777753 3445566666666666633333
Q ss_pred ceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcc-cccccccccccc
Q 045321 349 RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAM-PKLESLIVNPCA 395 (397)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~-p~L~~L~i~~C~ 395 (397)
..+| . ...++.|+.++++ |+++..+......- |+||+|+++|-+
T Consensus 443 ~~fP-e-~~~l~qL~~lDlS-~N~L~~~~l~~~~p~p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 443 LSFP-E-LAQLPQLKVLDLS-CNNLSEVTLPEALPSPNLKYLDLSGNT 487 (1081)
T ss_pred eech-h-hhhcCcceEEecc-cchhhhhhhhhhCCCcccceeeccCCc
Confidence 2333 2 4556666666666 34555543322222 566666666654
No 14
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.48 E-value=1.7e-16 Score=127.48 Aligned_cols=166 Identities=14% Similarity=0.123 Sum_probs=131.6
Q ss_pred hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCc
Q 045321 158 ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLM 237 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~ 237 (397)
+.+ -.+.+.+-|-+++|+++.+|+.|..+++|+.|++++|+|+++|.+++.+++|+.|++.-+.+..+|.++|.++.|+
T Consensus 27 ~gL-f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~le 105 (264)
T KOG0617|consen 27 PGL-FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALE 105 (264)
T ss_pred ccc-cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhh
Confidence 444 4567778889999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred EEEecCCCC--CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEE
Q 045321 238 HLNFGSITL--PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHL 315 (397)
Q Consensus 238 ~L~l~~~~~--~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L 315 (397)
.|++. .+. ...+|..+..|+.|+.++++++-. +.+|..++++++|+.|.++. ..|-+|+=.++. +..|++|
T Consensus 106 vldlt-ynnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrd-ndll~lpkeig~-lt~lrel 178 (264)
T KOG0617|consen 106 VLDLT-YNNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRD-NDLLSLPKEIGD-LTRLREL 178 (264)
T ss_pred hhhcc-ccccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeecc-CchhhCcHHHHH-HHHHHHH
Confidence 99998 553 557888888999999999988744 66788888888888887776 333333324445 6677777
Q ss_pred EEecccCCCCCcccccc
Q 045321 316 SLSNTELMQDPMPIMEK 332 (397)
Q Consensus 316 ~L~~~~l~~~~~~~l~~ 332 (397)
.+.+|.+ .-.++.+++
T Consensus 179 hiqgnrl-~vlppel~~ 194 (264)
T KOG0617|consen 179 HIQGNRL-TVLPPELAN 194 (264)
T ss_pred hccccee-eecChhhhh
Confidence 7777765 233344443
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.45 E-value=2.2e-13 Score=138.30 Aligned_cols=95 Identities=19% Similarity=0.183 Sum_probs=45.0
Q ss_pred eeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCC
Q 045321 166 YLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~ 245 (397)
.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.+..+|..+. .+|+.|+++ ++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls-~N 272 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLF-HN 272 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECc-CC
Confidence 34555555555555544332 245555555555555554332 245555555554445554432 245555555 44
Q ss_pred CCCCCCccccCCCCCcEEEcCCCe
Q 045321 246 LPAPPKNYSSSLKNLIFISALNPN 269 (397)
Q Consensus 246 ~~~~~p~~i~~l~~L~~l~l~~~~ 269 (397)
.+..+|..+. ++|+.|++++|+
T Consensus 273 ~L~~LP~~l~--~sL~~L~Ls~N~ 294 (754)
T PRK15370 273 KISCLPENLP--EELRYLSVYDNS 294 (754)
T ss_pred ccCccccccC--CCCcEEECCCCc
Confidence 4444444332 245555555443
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.44 E-value=1.4e-13 Score=139.75 Aligned_cols=179 Identities=17% Similarity=0.215 Sum_probs=101.0
Q ss_pred CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcE
Q 045321 137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQT 215 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 215 (397)
++++.|.+.++... .+ ..+ .++|++|++++|.++.+|..+. .+|+.|++++|.+.++|..+. .+|++
T Consensus 199 ~~L~~L~Ls~N~Lt-----sLP~~l---~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~ 266 (754)
T PRK15370 199 EQITTLILDNNELK-----SLPENL---QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQS 266 (754)
T ss_pred cCCcEEEecCCCCC-----cCChhh---ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCE
Confidence 46777777777654 34 222 2467777777777777776543 367777777777777776654 46777
Q ss_pred EecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC
Q 045321 216 LEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE 295 (397)
Q Consensus 216 L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~ 295 (397)
|++++|++..+|..+. ++|+.|+++ +|....+|..+. ++|+.+++++|.+ ..++..+ .++|+.|++++|
T Consensus 267 L~Ls~N~L~~LP~~l~--~sL~~L~Ls-~N~Lt~LP~~lp--~sL~~L~Ls~N~L----t~LP~~l--~~sL~~L~Ls~N 335 (754)
T PRK15370 267 LDLFHNKISCLPENLP--EELRYLSVY-DNSIRTLPAHLP--SGITHLNVQSNSL----TALPETL--PPGLKTLEAGEN 335 (754)
T ss_pred EECcCCccCccccccC--CCCcEEECC-CCccccCcccch--hhHHHHHhcCCcc----ccCCccc--cccceeccccCC
Confidence 7777777777776543 467777777 666666665443 3455566666544 2233222 245666665553
Q ss_pred CCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 296 SKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 296 ~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
.++.++- .++++|+.|++++|.+.. .+..+ .++|+.|+|++|.
T Consensus 336 -~Lt~LP~---~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~ 378 (754)
T PRK15370 336 -ALTSLPA---SLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNA 378 (754)
T ss_pred -ccccCCh---hhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCc
Confidence 2333211 113455555555555432 11112 2455555554443
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.42 E-value=9.8e-13 Score=133.08 Aligned_cols=219 Identities=17% Similarity=0.082 Sum_probs=105.7
Q ss_pred CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEe
Q 045321 138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLE 217 (397)
Q Consensus 138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~ 217 (397)
+|+.|.+.++... .++. ..+.|++|++++|.++.+|.. ..+|+.|++++|.+..+|.. ..+|+.|+
T Consensus 223 ~L~~L~L~~N~Lt-----~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~ 288 (788)
T PRK15387 223 HITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLPAL---PSGLCKLW 288 (788)
T ss_pred CCCEEEccCCcCC-----CCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhhhc---hhhcCEEE
Confidence 5566665555443 2221 235566666666666655532 23555555555555555432 23455555
Q ss_pred cCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC--
Q 045321 218 MPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-- 295 (397)
Q Consensus 218 l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-- 295 (397)
+++|++..+|.. +++|+.|+++ ++....+|.... +|+.|.+++|.+ ..+|. ...+|+.|+++++
T Consensus 289 Ls~N~Lt~LP~~---p~~L~~LdLS-~N~L~~Lp~lp~---~L~~L~Ls~N~L----~~LP~---lp~~Lq~LdLS~N~L 354 (788)
T PRK15387 289 IFGNQLTSLPVL---PPGLQELSVS-DNQLASLPALPS---ELCKLWAYNNQL----TSLPT---LPSGLQELSVSDNQL 354 (788)
T ss_pred CcCCcccccccc---ccccceeECC-CCccccCCCCcc---cccccccccCcc----ccccc---cccccceEecCCCcc
Confidence 555555555542 3456666665 555444443221 233333444432 11111 0124555555542
Q ss_pred -------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321 296 -------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL 362 (397)
Q Consensus 296 -------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 362 (397)
++|+.|.+ .+...+.+|+.|++++|.+.. .+ .. .++|+.|++++|.+.. ++. .+.+|
T Consensus 355 s~LP~lp~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt~-LP-~l--~s~L~~LdLS~N~Lss--IP~----l~~~L 424 (788)
T PRK15387 355 ASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LP-VL--PSELKELMVSGNRLTS--LPM----LPSGL 424 (788)
T ss_pred CCCCCCCcccceehhhccccccCcccccccceEEecCCcccC-CC-Cc--ccCCCEEEccCCcCCC--CCc----chhhh
Confidence 01222211 111113456667776666532 11 11 2466667776555432 111 12356
Q ss_pred CEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 363 TVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 363 ~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+.|+++++ .+..+|.....+++|+.|++++++
T Consensus 425 ~~L~Ls~N-qLt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 425 LSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhccC-cccccChHHhhccCCCeEECCCCC
Confidence 66677663 466666555667777777777654
No 18
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.40 E-value=1.1e-12 Score=135.31 Aligned_cols=255 Identities=22% Similarity=0.171 Sum_probs=173.7
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCC--cccccc-cccCCCCCceEecCCCC-CcccCccccC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAV--LDQFPL-GLENLILLKHLKLNIPS-LKCLPSLLCT 209 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~--i~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~~~~~ 209 (397)
......|.+.+.++... .++.- ...+.|++|-+.++. +..++. .+..++.||.||+++|. +.++|++|+.
T Consensus 520 ~~~~~~rr~s~~~~~~~-----~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~ 593 (889)
T KOG4658|consen 520 KSWNSVRRMSLMNNKIE-----HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE 593 (889)
T ss_pred cchhheeEEEEeccchh-----hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh
Confidence 56677888888777664 23222 455579999888886 555554 47789999999999865 8899999999
Q ss_pred CCCCcEEecCCcccccchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321 210 ILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE 288 (397)
Q Consensus 210 l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~ 288 (397)
|-+|++|+++++.+..+|.++++|++|.+|++. .+.. ..+|.....|++|+++.+....... .......+..+++|+
T Consensus 594 Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~-~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~-~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 594 LVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE-VTGRLESIPGILLELQSLRVLRLPRSALSN-DKLLLKELENLEHLE 671 (889)
T ss_pred hhhhhcccccCCCccccchHHHHHHhhheeccc-cccccccccchhhhcccccEEEeecccccc-chhhHHhhhcccchh
Confidence 999999999999999999999999999999998 7653 3344445559999998776542111 234445566777777
Q ss_pred EEEeecCC-------------------------CeeEEEeccCCCCCCceEEEEecccCCCCCc----------------
Q 045321 289 CLKLVNES-------------------------KLSRVVLSKYQFPLSLSHLSLSNTELMQDPM---------------- 327 (397)
Q Consensus 289 ~L~l~~~~-------------------------~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~---------------- 327 (397)
.+++.... ..+.+...... +++|+.|.+.+|.+.+...
T Consensus 672 ~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~-l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~ 750 (889)
T KOG4658|consen 672 NLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGS-LGNLEELSILDCGISEIVIEWEESLIVLLCFPNLS 750 (889)
T ss_pred hheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeeccccc-ccCcceEEEEcCCCchhhcccccccchhhhHHHHH
Confidence 77665421 11222213444 7888888888887532111
Q ss_pred -------------cccccCcCCceEEEecccccCceeEEe--------CCCCCCCCCEE-EEecCCCcCcEEECCCcccc
Q 045321 328 -------------PIMEKLPRLQVLKLKQNSYLGRKLACV--------GSSSFPKLTVL-HLKSMYWQDEWTMGAGAMPK 385 (397)
Q Consensus 328 -------------~~l~~l~~L~~L~L~~~~~~~~~~~~~--------~~~~~~~L~~L-~l~~~~~l~~~~~~~~~~p~ 385 (397)
.+..-.|+|+.|.+..+....+.++.. ....|.+++.+ .+.+.+.++++-...-.+|+
T Consensus 751 ~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~ 830 (889)
T KOG4658|consen 751 KVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLK 830 (889)
T ss_pred HHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccc
Confidence 111124788888886554333222111 02345566666 57777777777666667888
Q ss_pred ccccccccccCC
Q 045321 386 LESLIVNPCAYL 397 (397)
Q Consensus 386 L~~L~i~~C~~L 397 (397)
|+.+.+..||+|
T Consensus 831 l~~~~ve~~p~l 842 (889)
T KOG4658|consen 831 LEELIVEECPKL 842 (889)
T ss_pred hhheehhcCccc
Confidence 999999999885
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.36 E-value=8.3e-14 Score=129.98 Aligned_cols=61 Identities=25% Similarity=0.181 Sum_probs=27.4
Q ss_pred CCCceEEEEecccCCCCCcccccc-----CcCCceEEEecccccCce---eEEeCCCCCCCCCEEEEecC
Q 045321 309 PLSLSHLSLSNTELMQDPMPIMEK-----LPRLQVLKLKQNSYLGRK---LACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~~~~~~l~~-----l~~L~~L~L~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~ 370 (397)
+++|++|++++|.+....+..+.. .+.|++|+++++.+.... +... ...+++|+.++++++
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N 288 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGN 288 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCC
Confidence 555666666666543322222211 256666666554433111 1111 233456666666654
No 20
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.30 E-value=1.5e-13 Score=136.08 Aligned_cols=191 Identities=19% Similarity=0.172 Sum_probs=124.2
Q ss_pred CeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321 138 YLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL 216 (397)
Q Consensus 138 ~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 216 (397)
+|++|.++++... .+ ..+ ..+.+|+.|+++.|.|..+|.+++++.+|++++|.+|.+..+|.++..+++|+.|
T Consensus 46 ~L~~l~lsnn~~~-----~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-----SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeeccccccc-----cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhccccc
Confidence 3888888877665 44 344 6777888888888888888888888888888888888888888888888888888
Q ss_pred ecCCcccccchhhhhccccCcEEEecCCC--------------------CCCCCCccccCCCCCcEEEcCCCeeeEEecc
Q 045321 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSIT--------------------LPAPPKNYSSSLKNLIFISALNPNLSCYHSG 276 (397)
Q Consensus 217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~--------------------~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~ 276 (397)
++++|.....|..+..+..+..+.++ ++ ....++.++..++. .+++.+|++.
T Consensus 120 dlS~N~f~~~Pl~i~~lt~~~~~~~s-~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~----- 191 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLVIEVLTAEEELAAS-NNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME----- 191 (1081)
T ss_pred ccchhccCCCchhHHhhhHHHHHhhh-cchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-----
Confidence 88888777777655555544444444 32 12233344444444 3555555331
Q ss_pred HHhhhcCCCCC----------cEEEeecCCCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccccCcCCc
Q 045321 277 VSNSLLGLHKL----------ECLKLVNESKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQ 337 (397)
Q Consensus 277 ~~~~l~~l~~L----------~~L~l~~~~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 337 (397)
...+..+++| ..+.+.+ ++++.|.. .... +.+|++++++.+++.. .+.+++.+++|+
T Consensus 192 -~~dls~~~~l~~l~c~rn~ls~l~~~g-~~l~~L~a~~n~l~~~~~~p~-p~nl~~~dis~n~l~~-lp~wi~~~~nle 267 (1081)
T KOG0618|consen 192 -VLDLSNLANLEVLHCERNQLSELEISG-PSLTALYADHNPLTTLDVHPV-PLNLQYLDISHNNLSN-LPEWIGACANLE 267 (1081)
T ss_pred -hhhhhhccchhhhhhhhcccceEEecC-cchheeeeccCcceeeccccc-cccceeeecchhhhhc-chHHHHhcccce
Confidence 1223333333 3344443 55555544 1122 7789999999998744 448888999999
Q ss_pred eEEEecccc
Q 045321 338 VLKLKQNSY 346 (397)
Q Consensus 338 ~L~L~~~~~ 346 (397)
.+....|.+
T Consensus 268 ~l~~n~N~l 276 (1081)
T KOG0618|consen 268 ALNANHNRL 276 (1081)
T ss_pred EecccchhH
Confidence 999865554
No 21
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.29 E-value=4e-11 Score=121.55 Aligned_cols=218 Identities=17% Similarity=0.096 Sum_probs=115.1
Q ss_pred CCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEe
Q 045321 115 ANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLK 194 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~ 194 (397)
..++.|.+..+..... + ..+++|++|.+.++... .++.. .+.|+.|++++|.++.+|... .+|+.|+
T Consensus 222 ~~L~~L~L~~N~Lt~L-P-~lp~~Lk~LdLs~N~Lt-----sLP~l---p~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~ 288 (788)
T PRK15387 222 AHITTLVIPDNNLTSL-P-ALPPELRTLEVSGNQLT-----SLPVL---PPGLLELSIFSNPLTHLPALP---SGLCKLW 288 (788)
T ss_pred cCCCEEEccCCcCCCC-C-CCCCCCcEEEecCCccC-----cccCc---ccccceeeccCCchhhhhhch---hhcCEEE
Confidence 3567777763332221 1 23577888888887664 22221 245556666666555544321 3344455
Q ss_pred cCCCCCcccCccccCCCCCcEEecCCcccccchhhhh-----------------ccccCcEEEecCCCCCCCCCccccCC
Q 045321 195 LNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIW-----------------MMQKLMHLNFGSITLPAPPKNYSSSL 257 (397)
Q Consensus 195 l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~-----------------~L~~L~~L~l~~~~~~~~~p~~i~~l 257 (397)
+++|.++.+|.. +++|+.|++++|.+..+|.... -..+|+.|+++ ++.+..+|...
T Consensus 289 Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS-~N~Ls~LP~lp--- 361 (788)
T PRK15387 289 IFGNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVS-DNQLASLPTLP--- 361 (788)
T ss_pred CcCCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccccccccceEecC-CCccCCCCCCC---
Confidence 555555555432 2345555555554444433111 01256666666 55555555432
Q ss_pred CCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCc
Q 045321 258 KNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQ 337 (397)
Q Consensus 258 ~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 337 (397)
.+|+.+++++|.+ ..++.. ..+|+.|+++++ .+..++ ..+++|+.|++++|.+.. .+ .+ ..+|+
T Consensus 362 ~~L~~L~Ls~N~L----~~LP~l---~~~L~~LdLs~N-~Lt~LP----~l~s~L~~LdLS~N~Lss-IP-~l--~~~L~ 425 (788)
T PRK15387 362 SELYKLWAYNNRL----TSLPAL---PSGLKELIVSGN-RLTSLP----VLPSELKELMVSGNRLTS-LP-ML--PSGLL 425 (788)
T ss_pred cccceehhhcccc----ccCccc---ccccceEEecCC-cccCCC----CcccCCCEEEccCCcCCC-CC-cc--hhhhh
Confidence 2344445555543 223321 245677777663 333322 115678888888888643 22 21 34677
Q ss_pred eEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 338 VLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 338 ~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
.|++++|.+. .++.. ...+++|+.|++++++
T Consensus 426 ~L~Ls~NqLt--~LP~s-l~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 426 SLSVYRNQLT--RLPES-LIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhccCccc--ccChH-HhhccCCCeEECCCCC
Confidence 7888766654 34444 5677888888888764
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.29 E-value=2.5e-13 Score=126.76 Aligned_cols=234 Identities=18% Similarity=0.124 Sum_probs=145.7
Q ss_pred hHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-------cCccccCCCCCcEEecCCcccc-
Q 045321 158 ENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC-------LPSLLCTILNLQTLEMPSSYVD- 224 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~l~~~~l~- 224 (397)
..++..++.|++|+++++.++ .++..+...+.|++++++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344456666778888877763 355556666777777777765542 3345666778888888887544
Q ss_pred cchhhhhcccc---CcEEEecCCCCCC-----CCCccccCC-CCCcEEEcCCCeeeEE-eccHHhhhcCCCCCcEEEeec
Q 045321 225 HSLEDIWMMQK---LMHLNFGSITLPA-----PPKNYSSSL-KNLIFISALNPNLSCY-HSGVSNSLLGLHKLECLKLVN 294 (397)
Q Consensus 225 ~lp~~~~~L~~---L~~L~l~~~~~~~-----~~p~~i~~l-~~L~~l~l~~~~L~i~-~~~~~~~l~~l~~L~~L~l~~ 294 (397)
..+..+..+.+ |++|+++ +|... .+...+..+ ++|+.+++++|.+.-. ...+...+..+++|+.|++++
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls-~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~ 174 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLN-NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN 174 (319)
T ss_pred hHHHHHHHHhccCcccEEEee-CCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence 34455555555 8888887 66433 122345556 7788888887755211 124555667778888888887
Q ss_pred CCCeeEEEe-----ccCCCCCCceEEEEecccCCCCCc----cccccCcCCceEEEecccccCceeEEe--C-CCCCCCC
Q 045321 295 ESKLSRVVL-----SKYQFPLSLSHLSLSNTELMQDPM----PIMEKLPRLQVLKLKQNSYLGRKLACV--G-SSSFPKL 362 (397)
Q Consensus 295 ~~~L~~L~l-----~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~~~~~~~~~~~~--~-~~~~~~L 362 (397)
+. +..-.+ .+.. .++|++|++++|.+..... ..+..+++|++|++++|...+..+... + ....+.|
T Consensus 175 n~-l~~~~~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L 252 (319)
T cd00116 175 NG-IGDAGIRALAEGLKA-NCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISL 252 (319)
T ss_pred CC-CchHHHHHHHHHHHh-CCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCc
Confidence 42 221000 1233 5699999999998754332 345678999999998877654322111 0 1134799
Q ss_pred CEEEEecCCCcC-----cEEECCCcccccccccccccc
Q 045321 363 TVLHLKSMYWQD-----EWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 363 ~~L~l~~~~~l~-----~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+.|++.+|. +. .+......+++|+++++++++
T Consensus 253 ~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~ 289 (319)
T cd00116 253 LTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNK 289 (319)
T ss_pred eEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence 999999974 33 111223345788888887753
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.24 E-value=2.5e-13 Score=122.77 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=101.6
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCC-CCCcccCc-cccCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNI-PSLKCLPS-LLCTIL 211 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~-~~i~~lp~-~~~~l~ 211 (397)
......+.+..+.+. .+ +..|+.++.||.|||++|.|+.+ |+.+.++..|..|-+-+ |+|+.+|. .+++|.
T Consensus 66 P~~tveirLdqN~I~-----~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 66 PPETVEIRLDQNQIS-----SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCcceEEEeccCCcc-----cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 344566778888775 67 77779999999999999999954 88899999988887766 88999996 478899
Q ss_pred CCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCC
Q 045321 212 NLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNP 268 (397)
Q Consensus 212 ~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~ 268 (397)
.||.|.+.-|.+.-++. .+..|++|..|.+. .+....++. .+..+..++++.+..+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLsly-Dn~~q~i~~~tf~~l~~i~tlhlA~n 198 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLY-DNKIQSICKGTFQGLAAIKTLHLAQN 198 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhccc-chhhhhhccccccchhccchHhhhcC
Confidence 99999999887777664 58899999999998 777777776 5777888888666543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.22 E-value=1.3e-12 Score=118.17 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=73.6
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCC-CCcccccc-cccCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGY-AVLDQFPL-GLENLI 188 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~-~~i~~lp~-~~~~l~ 188 (397)
+...-.+.+..+....++++ ..+++||.|.++++.+. .| ++-|..++.|..|-+.+ |.|+.+|+ .+++|.
T Consensus 66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-----~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-----FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCcceEEEeccCCcccCChhhccchhhhceecccccchh-----hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 44455555554445554544 66666777777666654 44 44456666665555554 55666663 456666
Q ss_pred CCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchh-hhhccccCcEEEec
Q 045321 189 LLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFG 242 (397)
Q Consensus 189 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 242 (397)
.|+-|.+.-+.+..++ ..+..+++|..|.+..+.++.++. .+..+.+++++.+.
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA 196 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLA 196 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhh
Confidence 6666666666665443 345566666666666666666665 36666666666654
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.06 E-value=2.5e-10 Score=109.83 Aligned_cols=179 Identities=23% Similarity=0.234 Sum_probs=140.3
Q ss_pred hHHhcCCCeeEEEEcCCCCcccccccccCCC-CCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccC
Q 045321 158 ENFCEKFKYLRLLNLGYAVLDQFPLGLENLI-LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL 236 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L 236 (397)
..+ ..++.++.|++.++.+.++|+..+.+. +|+.|+++++.+..+|..++.+++|+.|++.+|.+.++|...+.+++|
T Consensus 110 ~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L 188 (394)
T COG4886 110 SEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL 188 (394)
T ss_pred hhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence 444 566789999999999999988888885 999999999999999888999999999999999999999987789999
Q ss_pred cEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEE
Q 045321 237 MHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLS 316 (397)
Q Consensus 237 ~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~ 316 (397)
+.|+++ ++....+|..++.+..|+++.++++.. ...+..+..+..+..+.+.. ..+..+.-.++. +++++.|+
T Consensus 189 ~~L~ls-~N~i~~l~~~~~~~~~L~~l~~~~N~~----~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~-l~~l~~L~ 261 (394)
T COG4886 189 NNLDLS-GNKISDLPPEIELLSALEELDLSNNSI----IELLSSLSNLKNLSGLELSN-NKLEDLPESIGN-LSNLETLD 261 (394)
T ss_pred hheecc-CCccccCchhhhhhhhhhhhhhcCCcc----eecchhhhhcccccccccCC-ceeeeccchhcc-ccccceec
Confidence 999999 888888888887888899988887732 34455666677777666543 222222225666 88899999
Q ss_pred EecccCCCCCccccccCcCCceEEEecccc
Q 045321 317 LSNTELMQDPMPIMEKLPRLQVLKLKQNSY 346 (397)
Q Consensus 317 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 346 (397)
+++|.+.. .+.++.+.+++.|+++++..
T Consensus 262 ~s~n~i~~--i~~~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 262 LSNNQISS--ISSLGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccccccc--cccccccCccCEEeccCccc
Confidence 99998643 33388889999999976543
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=5.8e-12 Score=118.90 Aligned_cols=126 Identities=22% Similarity=0.242 Sum_probs=61.8
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
.++..|.+|+++.|+++.+|..++.|+ |+.|-+++|+++.+|+.++.+..|..||.+.|.+..+|..++.+.+|+.|.+
T Consensus 118 ~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 118 CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV 196 (722)
T ss_pred hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence 444455555555555555554444432 4455555555555555555445555555555555555555555555555554
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN 294 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~ 294 (397)
. .+....+|...+.| .|..|++++|++ ..+|..+.+|++|+.|.+.+
T Consensus 197 r-Rn~l~~lp~El~~L-pLi~lDfScNki----s~iPv~fr~m~~Lq~l~Len 243 (722)
T KOG0532|consen 197 R-RNHLEDLPEELCSL-PLIRLDFSCNKI----SYLPVDFRKMRHLQVLQLEN 243 (722)
T ss_pred h-hhhhhhCCHHHhCC-ceeeeecccCce----eecchhhhhhhhheeeeecc
Confidence 4 44444444444422 244445554443 33445555555555555544
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.91 E-value=7.7e-11 Score=111.49 Aligned_cols=171 Identities=23% Similarity=0.246 Sum_probs=140.9
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..+-.|..+.++.|.+..+|..++++..|+||+++.|++..+|..++.|+ |+.|.+++|+++.+|..++-+..|.+|+.
T Consensus 95 ~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~ 173 (722)
T KOG0532|consen 95 CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDV 173 (722)
T ss_pred HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhh
Confidence 66677888889999999999999999999999999999999999999886 99999999999999999998889999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 321 (397)
+ .|.+..+|..++.+.+|+.+++..|.+ ..+|+.+..+ .|..|+++. .++..+++.|.. +..|++|-|.+|.
T Consensus 174 s-~nei~slpsql~~l~slr~l~vrRn~l----~~lp~El~~L-pLi~lDfSc-Nkis~iPv~fr~-m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 174 S-KNEIQSLPSQLGYLTSLRDLNVRRNHL----EDLPEELCSL-PLIRLDFSC-NKISYLPVDFRK-MRHLQVLQLENNP 245 (722)
T ss_pred h-hhhhhhchHHhhhHHHHHHHHHhhhhh----hhCCHHHhCC-ceeeeeccc-Cceeecchhhhh-hhhheeeeeccCC
Confidence 9 888889999999999999998888765 6677777744 477788874 788888888888 9999999999998
Q ss_pred CCCCCccccc---cCcCCceEEEe
Q 045321 322 LMQDPMPIME---KLPRLQVLKLK 342 (397)
Q Consensus 322 l~~~~~~~l~---~l~~L~~L~L~ 342 (397)
+ +.++..+. ...=.++|+..
T Consensus 246 L-qSPPAqIC~kGkVHIFKyL~~q 268 (722)
T KOG0532|consen 246 L-QSPPAQICEKGKVHIFKYLSTQ 268 (722)
T ss_pred C-CCChHHHHhccceeeeeeecch
Confidence 7 44544443 22333555553
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.90 E-value=1.4e-09 Score=104.57 Aligned_cols=178 Identities=26% Similarity=0.284 Sum_probs=145.5
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCC-eeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK-YLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~-~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
...+.+..+.+.++... .++.....++ +|+.|+++++.+..+|..++.+++|+.|++++|++.++|...+.+.+
T Consensus 113 ~~~~~l~~L~l~~n~i~-----~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~ 187 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-----DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSN 187 (394)
T ss_pred hcccceeEEecCCcccc-----cCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhh
Confidence 55678899988888775 5544425564 89999999999999988899999999999999999999988889999
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEe
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKL 292 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l 292 (397)
|+.|+++++.+..+|..+..+..|..+.++ ++.....+..+.+++++..+.+.++.+ ..++..++.++.++.|++
T Consensus 188 L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~-~N~~~~~~~~~~~~~~l~~l~l~~n~~----~~~~~~~~~l~~l~~L~~ 262 (394)
T COG4886 188 LNNLDLSGNKISDLPPEIELLSALEELDLS-NNSIIELLSSLSNLKNLSGLELSNNKL----EDLPESIGNLSNLETLDL 262 (394)
T ss_pred hhheeccCCccccCchhhhhhhhhhhhhhc-CCcceecchhhhhcccccccccCCcee----eeccchhccccccceecc
Confidence 999999999999999988778889999998 776677788888999988888777754 444678888889999999
Q ss_pred ecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321 293 VNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 293 ~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 324 (397)
++ ..+..++- ++. +.+++.|+++++.+..
T Consensus 263 s~-n~i~~i~~-~~~-~~~l~~L~~s~n~~~~ 291 (394)
T COG4886 263 SN-NQISSISS-LGS-LTNLRELDLSGNSLSN 291 (394)
T ss_pred cc-cccccccc-ccc-cCccCEEeccCccccc
Confidence 87 34444432 455 8899999999987643
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.87 E-value=1.1e-09 Score=91.60 Aligned_cols=102 Identities=23% Similarity=0.147 Sum_probs=22.9
Q ss_pred CCeeEEEEcCCCCccccccccc-CCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccccCcEEEe
Q 045321 164 FKYLRLLNLGYAVLDQFPLGLE-NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQKLMHLNF 241 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~~L~~L~l 241 (397)
...+|+|+|.++.|+.+ +.++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.+..++..+ ..+++|++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I-e~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI-ENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp -------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc-cchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 33445555555555433 2233 3445555555555555542 3445555555555555555554333 23555555555
Q ss_pred cCCCCCCCCC--ccccCCCCCcEEEcCCC
Q 045321 242 GSITLPAPPK--NYSSSLKNLIFISALNP 268 (397)
Q Consensus 242 ~~~~~~~~~p--~~i~~l~~L~~l~l~~~ 268 (397)
+ ++.+..+- ..++.+++|+.+++.+|
T Consensus 96 ~-~N~I~~l~~l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 96 S-NNKISDLNELEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp T-TS---SCCCCGGGGG-TT--EEE-TT-
T ss_pred c-CCcCCChHHhHHHHcCCCcceeeccCC
Confidence 5 44322221 23344555555555544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.81 E-value=4.7e-09 Score=87.74 Aligned_cols=124 Identities=21% Similarity=0.233 Sum_probs=39.1
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-cCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~ 212 (397)
..+.++|.|.+.++.+. .+..+-..+.+|++|++++|.|+.++ .+..+++|+.|++++|.|+.+++.+ ..+++
T Consensus 16 ~n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~ 89 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPN 89 (175)
T ss_dssp -------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT
T ss_pred ccccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCc
Confidence 33445666666666654 23333124566777777777776653 4566777777777777777665544 34677
Q ss_pred CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEE
Q 045321 213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFIS 264 (397)
Q Consensus 213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~ 264 (397)
|++|++++|++.++- ..+..+++|+.|++. +++....+. -+..+++|+.++
T Consensus 90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~-~NPv~~~~~YR~~vi~~lP~Lk~LD 146 (175)
T PF14580_consen 90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLE-GNPVCEKKNYRLFVIYKLPSLKVLD 146 (175)
T ss_dssp --EEE-TTS---SCCCCGGGGG-TT--EEE-T-T-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred CCEEECcCCcCCChHHhHHHHcCCCcceeecc-CCcccchhhHHHHHHHHcChhheeC
Confidence 777777777544432 235566777777776 655443332 245566666644
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.5e-09 Score=99.87 Aligned_cols=201 Identities=21% Similarity=0.173 Sum_probs=106.5
Q ss_pred CCCCCceEecCCCCCcccC--ccccCCCCCcEEecCCc---ccccchhhhhccccCcEEEecCCCCCCCCCc--cccCCC
Q 045321 186 NLILLKHLKLNIPSLKCLP--SLLCTILNLQTLEMPSS---YVDHSLEDIWMMQKLMHLNFGSITLPAPPKN--YSSSLK 258 (397)
Q Consensus 186 ~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~--~i~~l~ 258 (397)
++++||...+.++.+...+ +....+++.+.|||++| +...+-.....|++|+.|+++ .+.....-. .-..+.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls-~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLS-SNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccc-cccccCCccccchhhhh
Confidence 4455555555555544443 24445556666666655 333333445556666666665 432211111 112355
Q ss_pred CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCC-ccccccCcCCc
Q 045321 259 NLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQ 337 (397)
Q Consensus 259 ~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~ 337 (397)
.|+.+.++.|.+. ...+-..+..+++|+.|.+.++..+-.-.....- +..|+.|+|++|++...+ ....+.+|.|+
T Consensus 198 ~lK~L~l~~CGls--~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i-~~~L~~LdLs~N~li~~~~~~~~~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLS--WKDVQWILLTFPSLEVLYLEANEIILIKATSTKI-LQTLQELDLSNNNLIDFDQGYKVGTLPGLN 274 (505)
T ss_pred hhheEEeccCCCC--HHHHHHHHHhCCcHHHhhhhcccccceecchhhh-hhHHhhccccCCcccccccccccccccchh
Confidence 6666666666442 2333344456677777777664211111001222 777888888888754433 35567788888
Q ss_pred eEEEecccccCceeEEeC----CCCCCCCCEEEEecCCCcCcEEE--CCCcccccccccc
Q 045321 338 VLKLKQNSYLGRKLACVG----SSSFPKLTVLHLKSMYWQDEWTM--GAGAMPKLESLIV 391 (397)
Q Consensus 338 ~L~L~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~l~~~~~--~~~~~p~L~~L~i 391 (397)
.|+++.++......+..+ ...||+|+.|.+..+ ++.+|+. ....+++|+.|.+
T Consensus 275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred hhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhc
Confidence 888876665433222110 246788888888864 3555542 2234566666654
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=8.8e-10 Score=96.79 Aligned_cols=126 Identities=16% Similarity=0.118 Sum_probs=78.3
Q ss_pred CCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCC
Q 045321 188 ILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALN 267 (397)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~ 267 (397)
..|+.+|+++|.|+++-+++.-++.++.|++++|.+..+-. +..|++|++|+++ ++...++-.+-.++-+.+++.+.+
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS-~N~Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLS-GNLLAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecc-cchhHhhhhhHhhhcCEeeeehhh
Confidence 34667777777777777777777777777777776666554 6667777777777 665555544444556666666665
Q ss_pred CeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe--ccCCCCCCceEEEEecccC
Q 045321 268 PNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL--SKYQFPLSLSHLSLSNTEL 322 (397)
Q Consensus 268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l--~~~~~l~~L~~L~L~~~~l 322 (397)
|.+ .-.+.++++-+|..|++++ .+++.++- .+++ +|.|+.+.|.+|++
T Consensus 362 N~i-----E~LSGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~-LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 362 NKI-----ETLSGLRKLYSLVNLDLSS-NQIEELDEVNHIGN-LPCLETLRLTGNPL 411 (490)
T ss_pred hhH-----hhhhhhHhhhhheeccccc-cchhhHHHhccccc-ccHHHHHhhcCCCc
Confidence 522 2223445555666677766 23333321 4666 77788887777765
No 33
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.3e-10 Score=100.26 Aligned_cols=66 Identities=24% Similarity=0.132 Sum_probs=46.2
Q ss_pred cCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCC
Q 045321 305 KYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYW 372 (397)
Q Consensus 305 ~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 372 (397)
... +|+|.+|||++|. ++......+.+++.|++|.++.+.......... .++.|+|.+|++.+|-.
T Consensus 309 ~~r-cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 309 VRR-CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCVS 375 (419)
T ss_pred HHh-CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEeccccC
Confidence 344 8888888888885 344445667788888888885554444444445 67888888888888743
No 34
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=2.4e-09 Score=98.54 Aligned_cols=39 Identities=18% Similarity=0.237 Sum_probs=25.8
Q ss_pred CCCceEEEEecccCCC-CCccccccCcCCceEEEeccccc
Q 045321 309 PLSLSHLSLSNTELMQ-DPMPIMEKLPRLQVLKLKQNSYL 347 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~ 347 (397)
+++|++|++..|++.+ ..+..+..+++|+.|.+..+.+.
T Consensus 300 f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 300 FPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred cccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7888888888887632 23444555777888776555443
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.68 E-value=2.9e-09 Score=93.59 Aligned_cols=131 Identities=21% Similarity=0.256 Sum_probs=98.0
Q ss_pred cCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321 208 CTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL 287 (397)
Q Consensus 208 ~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L 287 (397)
...+.|+++|+++|.++.+-.++.-+++++.|+++ .+.+..+ +.+..+.+|+.+++++|.| ..+..+=.++-+.
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS-~N~i~~v-~nLa~L~~L~~LDLS~N~L----s~~~Gwh~KLGNI 354 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILS-QNRIRTV-QNLAELPQLQLLDLSGNLL----AECVGWHLKLGNI 354 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEecc-ccceeee-hhhhhcccceEeecccchh----HhhhhhHhhhcCE
Confidence 45677999999999999998888888999999998 7665544 4588889999999999865 3344444556677
Q ss_pred cEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC-CCccccccCcCCceEEEeccccc
Q 045321 288 ECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ-DPMPIMEKLPRLQVLKLKQNSYL 347 (397)
Q Consensus 288 ~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~~~~~ 347 (397)
+.|.+.+ ..++.|. .++. +-+|..|++++|++.+ +....++++|.|+.+.|.+|...
T Consensus 355 KtL~La~-N~iE~LS-GL~K-LYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 355 KTLKLAQ-NKIETLS-GLRK-LYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred eeeehhh-hhHhhhh-hhHh-hhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 7777776 2333332 3445 7789999999998744 34567899999999999777653
No 36
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.62 E-value=6.5e-09 Score=93.21 Aligned_cols=90 Identities=20% Similarity=0.121 Sum_probs=45.1
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCc----ccccc-------cccCCCCCceEecCCCCCc-
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVL----DQFPL-------GLENLILLKHLKLNIPSLK- 201 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i----~~lp~-------~~~~l~~L~~L~l~~~~i~- 201 (397)
..+..+..+.++++.+..-..+.+...+.+.+.||+-++++-.- .++|+ .+-..++|++++||.|.+.
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 56666666777766665433333433336666666666664431 13332 2233445666666655442
Q ss_pred c----cCccccCCCCCcEEecCCccc
Q 045321 202 C----LPSLLCTILNLQTLEMPSSYV 223 (397)
Q Consensus 202 ~----lp~~~~~l~~L~~L~l~~~~l 223 (397)
. +-.-+..++.|++|.+.+|.+
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCC
Confidence 1 112234455555555555533
No 37
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=3.8e-08 Score=86.55 Aligned_cols=208 Identities=17% Similarity=0.133 Sum_probs=124.7
Q ss_pred hHHhcCCCeeEEEEcCCCCcc---cccccccCCCCCceEecCCCCCcccCccc-cCCCCCcEEecCCc--ccccchhhhh
Q 045321 158 ENFCEKFKYLRLLNLGYAVLD---QFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILNLQTLEMPSS--YVDHSLEDIW 231 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~--~l~~lp~~~~ 231 (397)
..+=...+.++.+||.+|.|+ ++-.-+.+|++|++|+++.|.+...-.+. ..+.+|++|.+.++ ..+.....+.
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLD 143 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhh
Confidence 344356778899999999877 44445568899999999987754221222 35678899999888 5555666677
Q ss_pred ccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCC
Q 045321 232 MMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPL 310 (397)
Q Consensus 232 ~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~ 310 (397)
.+++++.|+++ .+ +++.++++++.. +... +.++.|+..+|+-..-+.. .++..+|
T Consensus 144 ~lP~vtelHmS-~N-------------~~rq~n~Dd~c~----e~~s------~~v~tlh~~~c~~~~w~~~~~l~r~Fp 199 (418)
T KOG2982|consen 144 DLPKVTELHMS-DN-------------SLRQLNLDDNCI----EDWS------TEVLTLHQLPCLEQLWLNKNKLSRIFP 199 (418)
T ss_pred cchhhhhhhhc-cc-------------hhhhhccccccc----cccc------hhhhhhhcCCcHHHHHHHHHhHHhhcc
Confidence 88888888877 32 233344433211 1110 1223333333321000000 1112288
Q ss_pred CceEEEEecccCCCCC-ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECC------Ccc
Q 045321 311 SLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA------GAM 383 (397)
Q Consensus 311 ~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~------~~~ 383 (397)
|+..+.+..|++.... -.....+|.+-.|+|+.+++....-.-. ..+||.|..|.+...|-+..+.... +.+
T Consensus 200 nv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~-Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL 278 (418)
T KOG2982|consen 200 NVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDA-LNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL 278 (418)
T ss_pred cchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHH-HcCCchhheeeccCCcccccccCCcceEEEEeec
Confidence 8888888888764322 2335567777788886666655443333 6789999999998877666654332 346
Q ss_pred ccccccc
Q 045321 384 PKLESLI 390 (397)
Q Consensus 384 p~L~~L~ 390 (397)
|+++.|+
T Consensus 279 ~~v~vLN 285 (418)
T KOG2982|consen 279 TKVQVLN 285 (418)
T ss_pred cceEEec
Confidence 6666654
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.55 E-value=2.2e-07 Score=94.21 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=60.3
Q ss_pred CceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEecCCCCC-CCCCccccCCCCCcEEEcC
Q 045321 190 LKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLP-APPKNYSSSLKNLIFISAL 266 (397)
Q Consensus 190 L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~-~~~p~~i~~l~~L~~l~l~ 266 (397)
++.|+|+++.+. .+|.+++++++|+.|++++|.+. .+|..++.+++|+.|+++ ++.. ..+|..++++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs-~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLS-YNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECC-CCCCCCCCchHHhcCCCCCEEECc
Confidence 555666666654 56666666666666666666443 566666666666666666 5543 3456666666666666666
Q ss_pred CCeeeEEeccHHhhhcCC-CCCcEEEeecC
Q 045321 267 NPNLSCYHSGVSNSLLGL-HKLECLKLVNE 295 (397)
Q Consensus 267 ~~~L~i~~~~~~~~l~~l-~~L~~L~l~~~ 295 (397)
+|.+ ...+|..++.+ .++..+++.++
T Consensus 499 ~N~l---~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 GNSL---SGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred CCcc---cccCChHHhhccccCceEEecCC
Confidence 6655 34555555442 34455555553
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.50 E-value=9.3e-08 Score=65.62 Aligned_cols=56 Identities=27% Similarity=0.422 Sum_probs=28.9
Q ss_pred eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCc
Q 045321 166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSS 221 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~ 221 (397)
+|++|++++|.++.+| ..+.++++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 4555555555555554 244455555555555555554442 3455555555555544
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.38 E-value=2.8e-07 Score=63.23 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=48.1
Q ss_pred CCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321 188 ILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 245 (397)
++|++|++++|++.++|+ .+..+++|++|++++|.+..+|+ .+..+++|++|+++ +|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~-~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLS-NN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEET-SS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCc-CC
Confidence 468899999999998884 66789999999999888888876 47889999999988 65
No 41
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.32 E-value=1.8e-07 Score=84.06 Aligned_cols=62 Identities=26% Similarity=0.260 Sum_probs=37.9
Q ss_pred CCCceEEEEecccCCCCCccccc-----cCcCCceEEEecccccCce---eEEeCCCCCCCCCEEEEecCC
Q 045321 309 PLSLSHLSLSNTELMQDPMPIME-----KLPRLQVLKLKQNSYLGRK---LACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~~~~~~l~-----~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~ 371 (397)
+++|+.|++++|.+.......+. ..|+|+.|.+.+|.+..+. +... ....|.|+.|.+++|.
T Consensus 240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR 309 (382)
T ss_pred cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence 67788888888876554433322 3678888888666543321 1111 3346788888888764
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=2.5e-06 Score=86.63 Aligned_cols=102 Identities=17% Similarity=0.170 Sum_probs=86.7
Q ss_pred eeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccccCcEEEec
Q 045321 166 YLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 166 ~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~ 242 (397)
.++.|+|+++.+. .+|..++++.+|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4888999999987 78899999999999999999986 88989999999999999999665 688889999999999999
Q ss_pred CCCC-CCCCCccccCC-CCCcEEEcCCC
Q 045321 243 SITL-PAPPKNYSSSL-KNLIFISALNP 268 (397)
Q Consensus 243 ~~~~-~~~~p~~i~~l-~~L~~l~l~~~ 268 (397)
++. ...+|..++.+ .++..+++.+|
T Consensus 499 -~N~l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 499 -GNSLSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred -CCcccccCChHHhhccccCceEEecCC
Confidence 765 44788877764 45667777765
No 43
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.23 E-value=1.3e-06 Score=55.13 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=17.3
Q ss_pred CCceEecCCCCCcccCccccCCCCCcEEecCCcccccc
Q 045321 189 LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS 226 (397)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l 226 (397)
+|++|++++|+|+.+|+.+++|++|++|++++|.+..+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 34444444444444444444555555555554444443
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.20 E-value=1.3e-06 Score=55.10 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=35.3
Q ss_pred CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc
Q 045321 165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS 205 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~ 205 (397)
++|++|++++|.|+.+|+.+++|++|++|++++|.++.+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence 46899999999999999889999999999999999987753
No 45
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.14 E-value=3.2e-07 Score=88.77 Aligned_cols=104 Identities=20% Similarity=0.179 Sum_probs=51.4
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..++.|..|++.++.|..+...+..+.+|++|++++|.|+.+ ..+..+..|+.|++.+|.+..++. +..+++|+.+++
T Consensus 92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred ccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence 445555555555555554433345555555555555555555 234455555555555554444433 333555555555
Q ss_pred cCCCCCCCCCcc-ccCCCCCcEEEcCCC
Q 045321 242 GSITLPAPPKNY-SSSLKNLIFISALNP 268 (397)
Q Consensus 242 ~~~~~~~~~p~~-i~~l~~L~~l~l~~~ 268 (397)
+ ++....+... ...+.+++.+.++++
T Consensus 170 ~-~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 170 S-YNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred C-cchhhhhhhhhhhhccchHHHhccCC
Confidence 5 4444333322 344444444444444
No 46
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.12 E-value=7.7e-06 Score=76.98 Aligned_cols=134 Identities=18% Similarity=0.129 Sum_probs=71.7
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC-CCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEE
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP-SLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHL 239 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L 239 (397)
..+++++.|++++|.++.+|. -..+|+.|.++++ .++.+|..+. .+|++|++++| .+..+|.. |+.|
T Consensus 49 ~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L 117 (426)
T PRK15386 49 EEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSL 117 (426)
T ss_pred HHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------cceE
Confidence 456777778888777777762 1235777777764 3666776553 57788888877 77777653 4555
Q ss_pred EecCCCC---CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEE
Q 045321 240 NFGSITL---PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLS 316 (397)
Q Consensus 240 ~l~~~~~---~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~ 316 (397)
++. .+. ...+|.+ |+.|.+.++.-.. ...++.. -.++|+.|.+.+|..+. ++ ...+.+|+.|+
T Consensus 118 ~L~-~n~~~~L~~LPss------Lk~L~I~~~n~~~-~~~lp~~--LPsSLk~L~Is~c~~i~-LP---~~LP~SLk~L~ 183 (426)
T PRK15386 118 EIK-GSATDSIKNVPNG------LTSLSINSYNPEN-QARIDNL--ISPSLKTLSLTGCSNII-LP---EKLPESLQSIT 183 (426)
T ss_pred EeC-CCCCcccccCcch------Hhheecccccccc-ccccccc--cCCcccEEEecCCCccc-Cc---ccccccCcEEE
Confidence 554 332 3344443 3333332210000 0001100 11467777777665432 10 11156777777
Q ss_pred Eecc
Q 045321 317 LSNT 320 (397)
Q Consensus 317 L~~~ 320 (397)
++.+
T Consensus 184 ls~n 187 (426)
T PRK15386 184 LHIE 187 (426)
T ss_pred eccc
Confidence 7665
No 47
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=4.9e-08 Score=85.92 Aligned_cols=81 Identities=20% Similarity=0.089 Sum_probs=39.7
Q ss_pred CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCC-Cccc--CccccCCCCC
Q 045321 138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPS-LKCL--PSLLCTILNL 213 (397)
Q Consensus 138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~-i~~l--p~~~~~l~~L 213 (397)
.|+.+++++..... ..+..+++.++.|+-|.+.|..+. .+-..+.+=.+|+.|+++.++ +++- ---+.+++.|
T Consensus 186 Rlq~lDLS~s~it~---stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L 262 (419)
T KOG2120|consen 186 RLQHLDLSNSVITV---STLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRL 262 (419)
T ss_pred hhHHhhcchhheeH---HHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhH
Confidence 35555555544431 122444455555666666665554 233344455556666665532 4321 1123455556
Q ss_pred cEEecCCc
Q 045321 214 QTLEMPSS 221 (397)
Q Consensus 214 ~~L~l~~~ 221 (397)
+.|++++|
T Consensus 263 ~~LNlsWc 270 (419)
T KOG2120|consen 263 DELNLSWC 270 (419)
T ss_pred hhcCchHh
Confidence 66666666
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.06 E-value=4.2e-07 Score=87.93 Aligned_cols=126 Identities=24% Similarity=0.257 Sum_probs=98.2
Q ss_pred CCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEec
Q 045321 163 KFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~ 242 (397)
.+..+..+.+..+.+...-..++.+++|.+|++.++.|+.+...+..+++|++|++++|.+..+.. +..++.|+.|++.
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccc-hhhccchhhheec
Confidence 345556666788877765566888999999999999999886658899999999999998888865 7788889999999
Q ss_pred CCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhh-hcCCCCCcEEEeecC
Q 045321 243 SITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNS-LLGLHKLECLKLVNE 295 (397)
Q Consensus 243 ~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~-l~~l~~L~~L~l~~~ 295 (397)
++.+..+ .++..+++|+.++++++.+ ..+... +..+..++.+.+.++
T Consensus 149 -~N~i~~~-~~~~~l~~L~~l~l~~n~i----~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 149 -GNLISDI-SGLESLKSLKLLDLSYNRI----VDIENDELSELISLEELDLGGN 196 (414)
T ss_pred -cCcchhc-cCCccchhhhcccCCcchh----hhhhhhhhhhccchHHHhccCC
Confidence 8877666 3666689999999998844 222221 466777887777763
No 49
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.04 E-value=2.6e-05 Score=73.52 Aligned_cols=161 Identities=14% Similarity=0.092 Sum_probs=95.5
Q ss_pred ccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCC-CCCCCCccccCCCCCc
Q 045321 184 LENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSIT-LPAPPKNYSSSLKNLI 261 (397)
Q Consensus 184 ~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~-~~~~~p~~i~~l~~L~ 261 (397)
+..+.+++.|++++|.++++|. + -.+|++|.+++| .+..+|..+ ..+|++|++. +| ....+|.+ |+
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls-~Cs~L~sLP~s------Le 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVC-HCPEISGLPES------VR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEcc-Ccccccccccc------cc
Confidence 4457899999999999999983 2 347999999999 888888755 2589999999 88 56677764 44
Q ss_pred EEEcCCCeeeEEeccHHhhhcCC-CCCcEEEeecCCCeeEEEeccC-CCCCCceEEEEecccCCCCCccccccCcCCceE
Q 045321 262 FISALNPNLSCYHSGVSNSLLGL-HKLECLKLVNESKLSRVVLSKY-QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVL 339 (397)
Q Consensus 262 ~l~l~~~~L~i~~~~~~~~l~~l-~~L~~L~l~~~~~L~~L~l~~~-~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 339 (397)
.|.+..+.+ . .+..+ ++|+.|.+.+....... ... .++++|++|++++|.... .++.+. .+|+.|
T Consensus 116 ~L~L~~n~~----~----~L~~LPssLk~L~I~~~n~~~~~--~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L 182 (426)
T PRK15386 116 SLEIKGSAT----D----SIKNVPNGLTSLSINSYNPENQA--RIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSI 182 (426)
T ss_pred eEEeCCCCC----c----ccccCcchHhheecccccccccc--ccccccCCcccEEEecCCCccc-Cccccc--ccCcEE
Confidence 444544311 1 12223 34566666431111000 111 116789999999887422 222222 588889
Q ss_pred EEecccccCceeEEeCCCCC-CCCCEEEEecCCCc
Q 045321 340 KLKQNSYLGRKLACVGSSSF-PKLTVLHLKSMYWQ 373 (397)
Q Consensus 340 ~L~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l 373 (397)
.++.+......++ ...+ +++ .|.+.+|-.+
T Consensus 183 ~ls~n~~~sLeI~---~~sLP~nl-~L~f~n~lkL 213 (426)
T PRK15386 183 TLHIEQKTTWNIS---FEGFPDGL-DIDLQNSVLL 213 (426)
T ss_pred EecccccccccCc---cccccccc-Eechhhhccc
Confidence 9854422111111 1223 344 6777766433
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.00 E-value=1.2e-07 Score=87.04 Aligned_cols=256 Identities=18% Similarity=0.131 Sum_probs=125.7
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCC-cccc-cc-cccCCCCCceEecCCCC-Ccc--cCccc
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAV-LDQF-PL-GLENLILLKHLKLNIPS-LKC--LPSLL 207 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~-i~~l-p~-~~~~l~~L~~L~l~~~~-i~~--lp~~~ 207 (397)
..+++++.|.+.++...+ ...+.++-..++.|+.|++..|. ++.. .+ -...+++|+||+++++. |.. +-.-.
T Consensus 161 ~~CpnIehL~l~gc~~iT--d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~ 238 (483)
T KOG4341|consen 161 SNCPNIEHLALYGCKKIT--DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ 238 (483)
T ss_pred hhCCchhhhhhhcceecc--HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence 455555555555544221 11223333555666666666644 3311 11 22345566666666643 332 11122
Q ss_pred cCCCCCcEEecCCc---ccccchhhhhccccCcEEEecCCCCCCC---CCccccCCCCCcEEEcCCCeeeEEeccHHhhh
Q 045321 208 CTILNLQTLEMPSS---YVDHSLEDIWMMQKLMHLNFGSITLPAP---PKNYSSSLKNLIFISALNPNLSCYHSGVSNSL 281 (397)
Q Consensus 208 ~~l~~L~~L~l~~~---~l~~lp~~~~~L~~L~~L~l~~~~~~~~---~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l 281 (397)
.....++.+..++| .+..+-..-+...-+..+++. .|.... +-..-..+..||.+..++|.- + .+....++
T Consensus 239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~-~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~-~d~~l~aL 315 (483)
T KOG4341|consen 239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQ-HCNQLTDEDLWLIACGCHALQVLCYSSCTD-I-TDEVLWAL 315 (483)
T ss_pred ccchhhhhhhhcccccccHHHHHHHhccChHhhccchh-hhccccchHHHHHhhhhhHhhhhcccCCCC-C-chHHHHHH
Confidence 33444555555555 111121111222233444443 332110 000112245556666555411 1 22233333
Q ss_pred -cCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCC-cccc-ccCcCCceEEEecccccC-c---eeEE
Q 045321 282 -LGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDP-MPIM-EKLPRLQVLKLKQNSYLG-R---KLAC 353 (397)
Q Consensus 282 -~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~-~~~l-~~l~~L~~L~L~~~~~~~-~---~~~~ 353 (397)
...++|+.|-+.+|.++..-.+ .++...+.|+.+++.+|...... +..+ .++|.|+.|.++.+.... + .+..
T Consensus 316 g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~ 395 (483)
T KOG4341|consen 316 GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSS 395 (483)
T ss_pred hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhh
Confidence 3456777777777655443322 12222778888888888642222 3333 357889999886433221 1 1222
Q ss_pred eCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccccccccc
Q 045321 354 VGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 354 ~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C~ 395 (397)
. ..+...|+.+.+++||.+.+-. .....+++||.+++.+|.
T Consensus 396 ~-~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q 437 (483)
T KOG4341|consen 396 S-SCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ 437 (483)
T ss_pred c-cccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence 2 4667788999999998766432 223467888888888875
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.93 E-value=1.2e-05 Score=81.76 Aligned_cols=127 Identities=17% Similarity=0.162 Sum_probs=86.5
Q ss_pred CCCeEEEEEEeCcc-chhhc-c--CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCC
Q 045321 114 LANVKRCFILEDLI-EFIFL-E--QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~-~~~~~-~--~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~ 189 (397)
..+++++.+.+... ...++ . .-+|.||+|.+.+-... ...+..++.++++|+.||++++.++.+ ..+++|++
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~Lkn 196 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKN 196 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhcccc
Confidence 34567777763221 11122 2 67899999998887664 224556668899999999999998877 77889999
Q ss_pred CceEecCCCCCccc--CccccCCCCCcEEecCCcccccchh-------hhhccccCcEEEecCCC
Q 045321 190 LKHLKLNIPSLKCL--PSLLCTILNLQTLEMPSSYVDHSLE-------DIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 190 L~~L~l~~~~i~~l--p~~~~~l~~L~~L~l~~~~l~~lp~-------~~~~L~~L~~L~l~~~~ 245 (397)
|+.|.+++-.++.- -..+.+|++|++||++......-+. .-..|++||.||.+ ++
T Consensus 197 Lq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcS-gT 260 (699)
T KOG3665|consen 197 LQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCS-GT 260 (699)
T ss_pred HHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecC-Cc
Confidence 99998887665532 2467789999999998773222221 11237788888777 54
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.90 E-value=7.8e-06 Score=83.10 Aligned_cols=130 Identities=20% Similarity=0.165 Sum_probs=81.1
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l 210 (397)
..-.+|+.|.+.+.... .... ..+-..+|.||.|.+.+-.+. ++-.-..++++|+.||+++++++.+ ..+++|
T Consensus 119 ~sr~nL~~LdI~G~~~~---s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L 194 (699)
T KOG3665|consen 119 ESRQNLQHLDISGSELF---SNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL 194 (699)
T ss_pred HHHHhhhhcCccccchh---hccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc
Confidence 44567777777775443 1122 444466778888888776654 3334445777888888888888777 678888
Q ss_pred CCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCcc-------ccCCCCCcEEEcCCC
Q 045321 211 LNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKNY-------SSSLKNLIFISALNP 268 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~~-------i~~l~~L~~l~l~~~ 268 (397)
++||+|.+++=.+..-+ ..+-+|++|++||++ .......+.. -..|++|+.+++++.
T Consensus 195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS-~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT 260 (699)
T KOG3665|consen 195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDIS-RDKNNDDTKIIEQYLECGMVLPELRFLDCSGT 260 (699)
T ss_pred ccHHHHhccCCCCCchhhHHHHhcccCCCeeecc-ccccccchHHHHHHHHhcccCccccEEecCCc
Confidence 88888877765444322 246678888888887 4432222211 122667777777765
No 53
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.83 E-value=4.5e-06 Score=65.43 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=67.0
Q ss_pred cCCCeeEEEEcCCCCccccccccc-CCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEE
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLE-NLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLN 240 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 240 (397)
....+|...++++|.+..+|+.+. +.+.++.|++++|.|.++|.++..++.|+.|+++.|.+...|.-+..|.++-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 566677778888888887776665 3347778888888888888888888888888888887777777777788888887
Q ss_pred ecCCCCCCCCC
Q 045321 241 FGSITLPAPPK 251 (397)
Q Consensus 241 l~~~~~~~~~p 251 (397)
.. ++....+|
T Consensus 130 s~-~na~~eid 139 (177)
T KOG4579|consen 130 SP-ENARAEID 139 (177)
T ss_pred CC-CCccccCc
Confidence 77 66555555
No 54
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.80 E-value=4.5e-07 Score=83.41 Aligned_cols=58 Identities=24% Similarity=0.279 Sum_probs=22.8
Q ss_pred CCCCcEEEeecCCCeeEEEec-cCCCCCCceEEEEeccc-CCCCCccccc-cCcCCceEEE
Q 045321 284 LHKLECLKLVNESKLSRVVLS-KYQFPLSLSHLSLSNTE-LMQDPMPIME-KLPRLQVLKL 341 (397)
Q Consensus 284 l~~L~~L~l~~~~~L~~L~l~-~~~~l~~L~~L~L~~~~-l~~~~~~~l~-~l~~L~~L~L 341 (397)
+..|+.|..++|.++....+| ++.-.++|+.|.++.|+ +....+..++ +++.|+.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~ 353 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL 353 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence 344455554444433332221 11114455555555543 2222222222 2445555554
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.70 E-value=2.8e-06 Score=66.59 Aligned_cols=104 Identities=18% Similarity=0.168 Sum_probs=86.0
Q ss_pred CCeeEEEEcCCCCccccc---ccccCCCCCceEecCCCCCcccCccccCC-CCCcEEecCCcccccchhhhhccccCcEE
Q 045321 164 FKYLRLLNLGYAVLDQFP---LGLENLILLKHLKLNIPSLKCLPSLLCTI-LNLQTLEMPSSYVDHSLEDIWMMQKLMHL 239 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~~lp---~~~~~l~~L~~L~l~~~~i~~lp~~~~~l-~~L~~L~l~~~~l~~lp~~~~~L~~L~~L 239 (397)
-+.+..++|++|++-.++ ..+....+|+..++++|.++.+|+.+... +-+++|++.+|.+.++|..+..++.|+.|
T Consensus 26 akE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 26 AKELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSL 105 (177)
T ss_pred HHHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhc
Confidence 345677899999866444 44556778888899999999999877644 48999999999999999999999999999
Q ss_pred EecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321 240 NFGSITLPAPPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 240 ~l~~~~~~~~~p~~i~~l~~L~~l~l~~~ 268 (397)
++. .+.....|.-|..|.++..++..++
T Consensus 106 Nl~-~N~l~~~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 106 NLR-FNPLNAEPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred ccc-cCccccchHHHHHHHhHHHhcCCCC
Confidence 999 8888888888888888877777665
No 56
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.37 E-value=0.00016 Score=63.36 Aligned_cols=228 Identities=16% Similarity=0.119 Sum_probs=127.0
Q ss_pred cCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCC--CC-C-cccCc-------cccCCCCCcEEecCCc-ccc
Q 045321 162 EKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNI--PS-L-KCLPS-------LLCTILNLQTLEMPSS-YVD 224 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~--~~-i-~~lp~-------~~~~l~~L~~L~l~~~-~l~ 224 (397)
..+..+..++|+||.|. .+...|.+-.+|+..+++. ++ . .++|+ .+-++++||+.+++.| .-.
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 44667777777777765 3444555666777777665 22 1 13443 3457788888888888 222
Q ss_pred cchh----hhhccccCcEEEecCCCCCCCCCc--------------cccCCCCCcEEEcCCCeeeEEe-ccHHhhhcCCC
Q 045321 225 HSLE----DIWMMQKLMHLNFGSITLPAPPKN--------------YSSSLKNLIFISALNPNLSCYH-SGVSNSLLGLH 285 (397)
Q Consensus 225 ~lp~----~~~~L~~L~~L~l~~~~~~~~~p~--------------~i~~l~~L~~l~l~~~~L~i~~-~~~~~~l~~l~ 285 (397)
+.|. -|++-+.|.||.++ +|....+.. .+.+-+.|+++.++.|.+.-.. ......+..-.
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~-NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~ 185 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLN-NNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE 185 (388)
T ss_pred ccchHHHHHHhcCCCceeEEee-cCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence 3333 36666788999988 775433321 1334577888888877552111 11222333335
Q ss_pred CCcEEEeecC---C-CeeEEEe-ccCCCCCCceEEEEecccCCCCCccc----cccCcCCceEEEecccccC-cee----
Q 045321 286 KLECLKLVNE---S-KLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPI----MEKLPRLQVLKLKQNSYLG-RKL---- 351 (397)
Q Consensus 286 ~L~~L~l~~~---~-~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~----l~~l~~L~~L~L~~~~~~~-~~~---- 351 (397)
+|+.+.+..+ | ....|-+ .... +.+|+.|+|.+|.++...-.. +..++.|+.|.+ +.|... +..
T Consensus 186 ~lk~vki~qNgIrpegv~~L~~~gl~y-~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~l-nDClls~~G~~~v~ 263 (388)
T COG5238 186 NLKEVKIQQNGIRPEGVTMLAFLGLFY-SHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRL-NDCLLSNEGVKSVL 263 (388)
T ss_pred CceeEEeeecCcCcchhHHHHHHHHHH-hCcceeeeccccchhhhhHHHHHHHhcccchhhhccc-cchhhccccHHHHH
Confidence 6777777653 1 1111100 1222 778888999888765443333 345677888888 444321 110
Q ss_pred -EEeCCCCCCCCCEEEEecCCCcCc-E------EECCCcccccccccccc
Q 045321 352 -ACVGSSSFPKLTVLHLKSMYWQDE-W------TMGAGAMPKLESLIVNP 393 (397)
Q Consensus 352 -~~~~~~~~~~L~~L~l~~~~~l~~-~------~~~~~~~p~L~~L~i~~ 393 (397)
.+. ...+|+|..|...+...-.. + .+..+++|-|..|.+.+
T Consensus 264 ~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ng 312 (388)
T COG5238 264 RRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNG 312 (388)
T ss_pred HHhh-hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHcc
Confidence 011 23467788777776422111 1 12356778877777664
No 57
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=2.2e-06 Score=84.16 Aligned_cols=98 Identities=19% Similarity=0.134 Sum_probs=57.3
Q ss_pred eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321 167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
|.+.+.++|.+..+-.++.-++.|+.|+|++|++...- .+..+++|++||+++|.+..+|.- .... +|+.|.+. ++
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr-nN 242 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR-NN 242 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeec-cc
Confidence 44455555555555555666666666677666665553 456666666777766666666542 1112 36666666 55
Q ss_pred CCCCCCccccCCCCCcEEEcCCC
Q 045321 246 LPAPPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 246 ~~~~~p~~i~~l~~L~~l~l~~~ 268 (397)
....+ .+|.+|++|+.++++.|
T Consensus 243 ~l~tL-~gie~LksL~~LDlsyN 264 (1096)
T KOG1859|consen 243 ALTTL-RGIENLKSLYGLDLSYN 264 (1096)
T ss_pred HHHhh-hhHHhhhhhhccchhHh
Confidence 44443 46666666666666654
No 58
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.26 E-value=5.2e-05 Score=67.23 Aligned_cols=116 Identities=18% Similarity=0.220 Sum_probs=64.6
Q ss_pred HHhhhcCCCCCcEEEeecCCCeeEEEe---ccCCCCCCceEEEEecccCCC--CCccccccCcCCceEEEecccccCcee
Q 045321 277 VSNSLLGLHKLECLKLVNESKLSRVVL---SKYQFPLSLSHLSLSNTELMQ--DPMPIMEKLPRLQVLKLKQNSYLGRKL 351 (397)
Q Consensus 277 ~~~~l~~l~~L~~L~l~~~~~L~~L~l---~~~~~l~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~~~~~~~~~ 351 (397)
....+..++.++.|+++. .+++.+.+ ....+-+.+.+|....|.... ....--.-+|++..+.+..+......-
T Consensus 138 ~~s~l~~lP~vtelHmS~-N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ 216 (418)
T KOG2982|consen 138 STSSLDDLPKVTELHMSD-NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESS 216 (418)
T ss_pred hhhhhhcchhhhhhhhcc-chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhh
Confidence 344455566666666654 33333332 111112345555555553210 001111236888888886665555443
Q ss_pred EEeCCCCCCCCCEEEEecCCCcCcEEE--CCCcccccccccccccc
Q 045321 352 ACVGSSSFPKLTVLHLKSMYWQDEWTM--GAGAMPKLESLIVNPCA 395 (397)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~~~~l~~~~~--~~~~~p~L~~L~i~~C~ 395 (397)
.-. ...+|.+..|.+.. .++.+|.. ....||.|..|.+.+-|
T Consensus 217 ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~P 260 (418)
T KOG2982|consen 217 EKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENP 260 (418)
T ss_pred ccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCc
Confidence 333 67788888888876 45777742 34578999988887765
No 59
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.15 E-value=2.7e-05 Score=76.82 Aligned_cols=98 Identities=18% Similarity=0.237 Sum_probs=45.0
Q ss_pred CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCccccCCCCCc
Q 045321 136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSLLCTILNLQ 214 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 214 (397)
++.++.|+++.+... ... .+..++.|+.||+++|.+..+|.- ...+ +|..|.+++|.++++ ..+.+|.+|+
T Consensus 186 l~ale~LnLshNk~~-----~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~ 257 (1096)
T KOG1859|consen 186 LPALESLNLSHNKFT-----KVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLY 257 (1096)
T ss_pred HHHhhhhccchhhhh-----hhH-HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhh
Confidence 444555555554443 112 224555555555555555544431 1112 255555555555555 3355555555
Q ss_pred EEecCCccc---ccchhhhhccccCcEEEec
Q 045321 215 TLEMPSSYV---DHSLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 215 ~L~l~~~~l---~~lp~~~~~L~~L~~L~l~ 242 (397)
.||+++|-+ .++-. ++.|..|+.|.+.
T Consensus 258 ~LDlsyNll~~hseL~p-LwsLs~L~~L~Le 287 (1096)
T KOG1859|consen 258 GLDLSYNLLSEHSELEP-LWSLSSLIVLWLE 287 (1096)
T ss_pred ccchhHhhhhcchhhhH-HHHHHHHHHHhhc
Confidence 555555522 22211 4444555555555
No 60
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00084 Score=56.45 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=22.2
Q ss_pred CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhc-cccCcEEEec
Q 045321 190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWM-MQKLMHLNFG 242 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~-L~~L~~L~l~ 242 (397)
...+|++.|.+..++ .+..+..|++|.+..|.+.++-+.+.. +++|..|.+.
T Consensus 44 ~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Lt 96 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILT 96 (233)
T ss_pred cceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEec
Confidence 344455555444432 233444455555544444444333322 2234444444
No 61
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=6.4e-05 Score=66.03 Aligned_cols=101 Identities=19% Similarity=0.235 Sum_probs=75.5
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccC--ccccCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLP--SLLCTIL 211 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp--~~~~~l~ 211 (397)
.++.+.+.|++.++...+ -+++.+|+.|.||.|+-|+|+.+ ..+..+++|+.|.|+.|.|..+. ..+.+++
T Consensus 16 sdl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlp 88 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLP 88 (388)
T ss_pred hHHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCc
Confidence 445677778888887753 45668999999999999999877 45788999999999998887653 4567888
Q ss_pred CCcEEecCCc-ccccch-----hhhhccccCcEEEe
Q 045321 212 NLQTLEMPSS-YVDHSL-----EDIWMMQKLMHLNF 241 (397)
Q Consensus 212 ~L~~L~l~~~-~l~~lp-----~~~~~L~~L~~L~l 241 (397)
+|++|.|..| .-.+-+ ..+.-|++|+.||=
T Consensus 89 sLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 89 SLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred hhhhHhhccCCcccccchhHHHHHHHHcccchhccC
Confidence 8999988776 222222 23667888888864
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.74 E-value=0.0031 Score=53.16 Aligned_cols=100 Identities=21% Similarity=0.129 Sum_probs=67.0
Q ss_pred CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccC-CCCCcEEecCCcccccchh--hhhccccCcEEEe
Q 045321 165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCT-ILNLQTLEMPSSYVDHSLE--DIWMMQKLMHLNF 241 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l 241 (397)
.+...+||++|.+..++ .+..+..|.+|.+.+|+|..+-+.+.. +++|++|.+.+|+++++-+ .+..+++|++|.+
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 45567888888876553 356778888888888888877666654 5678999998887777653 2566778888887
Q ss_pred cCCCCCCCCCc----cccCCCCCcEEEcC
Q 045321 242 GSITLPAPPKN----YSSSLKNLIFISAL 266 (397)
Q Consensus 242 ~~~~~~~~~p~----~i~~l~~L~~l~l~ 266 (397)
- ++....-+. -+..+++|++|+..
T Consensus 121 l-~Npv~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 121 L-GNPVEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred c-CCchhcccCceeEEEEecCcceEeehh
Confidence 7 554332221 24445556655554
No 63
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.39 E-value=0.0019 Score=56.50 Aligned_cols=91 Identities=20% Similarity=0.121 Sum_probs=58.3
Q ss_pred cCCCeeEEEEcCCCC--cc-cccccccCCCCCceEecCCCCCc---ccCccccCCCCCcEEecCCcccccch----hhhh
Q 045321 162 EKFKYLRLLNLGYAV--LD-QFPLGLENLILLKHLKLNIPSLK---CLPSLLCTILNLQTLEMPSSYVDHSL----EDIW 231 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~--i~-~lp~~~~~l~~L~~L~l~~~~i~---~lp~~~~~l~~L~~L~l~~~~l~~lp----~~~~ 231 (397)
..++.|+.|.++.|. +. .++-...++++|++|++++|+|+ ++ ..+..+.+|..|++..|....+- ..+.
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl-~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ 140 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTL-RPLKELENLKSLDLFNCSVTNLDDYREKVFL 140 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccccccc-chhhhhcchhhhhcccCCccccccHHHHHHH
Confidence 667778888888883 33 44444455688888888888765 33 23567777888888888443332 2255
Q ss_pred ccccCcEEEecCCCCCCCCCccc
Q 045321 232 MMQKLMHLNFGSITLPAPPKNYS 254 (397)
Q Consensus 232 ~L~~L~~L~l~~~~~~~~~p~~i 254 (397)
-+++|++|+-. .......|...
T Consensus 141 ll~~L~~LD~~-dv~~~Ea~~~~ 162 (260)
T KOG2739|consen 141 LLPSLKYLDGC-DVDGEEAPEAD 162 (260)
T ss_pred Hhhhhcccccc-ccCCccccccc
Confidence 67788888766 55555555433
No 64
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.34 E-value=0.00047 Score=68.00 Aligned_cols=134 Identities=16% Similarity=0.063 Sum_probs=78.0
Q ss_pred hHHhcCCCeeEEEEcCCCC-ccc--ccccccCCCCCceEecCCC-C-Ccc----cCccccCCCCCcEEecCCcc-cccch
Q 045321 158 ENFCEKFKYLRLLNLGYAV-LDQ--FPLGLENLILLKHLKLNIP-S-LKC----LPSLLCTILNLQTLEMPSSY-VDHSL 227 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~-~-i~~----lp~~~~~l~~L~~L~l~~~~-l~~lp 227 (397)
..+...++.|+.|.+.++. +.. +-......++|+.|+++++ . +.. .+.....+.+|+.|++++|. +...-
T Consensus 181 ~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~ 260 (482)
T KOG1947|consen 181 LRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG 260 (482)
T ss_pred HHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence 4444567888888888886 543 3355667889999998863 2 111 12234456888999998883 44432
Q ss_pred -hhhh-ccccCcEEEecCCCCC-C--CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321 228 -EDIW-MMQKLMHLNFGSITLP-A--PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV 293 (397)
Q Consensus 228 -~~~~-~L~~L~~L~l~~~~~~-~--~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~ 293 (397)
..+. .+++|++|.+. +|.. . .+-.....+++|+.+++++|.- +....+......+++|+.|.+.
T Consensus 261 l~~l~~~c~~L~~L~l~-~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~~~~~~c~~l~~l~~~ 329 (482)
T KOG1947|consen 261 LSALASRCPNLETLSLS-NCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLEALLKNCPNLRELKLL 329 (482)
T ss_pred HHHHHhhCCCcceEccC-CCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHHHHHHhCcchhhhhhh
Confidence 1222 36788888876 6653 1 1222234567788888887622 1112233334445555554433
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.20 E-value=0.0015 Score=34.29 Aligned_cols=15 Identities=33% Similarity=0.461 Sum_probs=5.7
Q ss_pred ceEecCCCCCcccCc
Q 045321 191 KHLKLNIPSLKCLPS 205 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~ 205 (397)
++|++++|.++++|+
T Consensus 3 ~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 3 EYLDLSGNNLTSIPS 17 (22)
T ss_dssp SEEEETSSEESEEGT
T ss_pred cEEECCCCcCEeCCh
Confidence 333333333333333
No 66
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.12 E-value=0.0088 Score=52.81 Aligned_cols=40 Identities=30% Similarity=0.302 Sum_probs=22.5
Q ss_pred cCCCeeEEEEcCCCCcc-ccc----ccccCCCCCceEecCCCCCc
Q 045321 162 EKFKYLRLLNLGYAVLD-QFP----LGLENLILLKHLKLNIPSLK 201 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~-~lp----~~~~~l~~L~~L~l~~~~i~ 201 (397)
-+|++|...+|+.|.+. ..| +.|++-..|.+|.+++|.+.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC
Confidence 56666666666666644 222 33445556666666666553
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.00043 Score=61.02 Aligned_cols=82 Identities=20% Similarity=0.166 Sum_probs=66.9
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchh--hhhccccCcEE
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE--DIWMMQKLMHL 239 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L 239 (397)
+.+...+.|+++||.++.+ +-..+|+.|+.|.|+-|.|+.| ..+..+++|++|.|+.|.|..+-. -+.++++||.|
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 3455678899999998865 3456899999999999999999 458899999999999997777654 37789999999
Q ss_pred EecCCCC
Q 045321 240 NFGSITL 246 (397)
Q Consensus 240 ~l~~~~~ 246 (397)
-+. .+.
T Consensus 94 WL~-ENP 99 (388)
T KOG2123|consen 94 WLD-ENP 99 (388)
T ss_pred hhc-cCC
Confidence 887 543
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.94 E-value=0.0035 Score=32.89 Aligned_cols=21 Identities=14% Similarity=0.178 Sum_probs=16.2
Q ss_pred CCcEEecCCcccccchhhhhc
Q 045321 212 NLQTLEMPSSYVDHSLEDIWM 232 (397)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~~~~ 232 (397)
+|++|++++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 478888888877788877654
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.0004 Score=68.51 Aligned_cols=110 Identities=21% Similarity=0.092 Sum_probs=63.3
Q ss_pred CCCCCceEecCCCC-Ccc--cCccccCCCCCcEEecCCc--ccccch----hhhhccccCcEEEecCCCCC-CC-CCccc
Q 045321 186 NLILLKHLKLNIPS-LKC--LPSLLCTILNLQTLEMPSS--YVDHSL----EDIWMMQKLMHLNFGSITLP-AP-PKNYS 254 (397)
Q Consensus 186 ~l~~L~~L~l~~~~-i~~--lp~~~~~l~~L~~L~l~~~--~l~~lp----~~~~~L~~L~~L~l~~~~~~-~~-~p~~i 254 (397)
..+.|+.|.+.++. +.. +-......++|+.|++++| .....+ .....+++|+.|++. .|.. .. .-..+
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~-~~~~isd~~l~~l 264 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLS-GCGLVTDIGLSAL 264 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchh-hhhccCchhHHHH
Confidence 36777778777753 443 3345567788888888873 222222 223345678888887 6542 11 11122
Q ss_pred c-CCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCC
Q 045321 255 S-SLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESK 297 (397)
Q Consensus 255 ~-~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~ 297 (397)
+ .+++|+.+.+.+|.- ++...+......+++|++|++++|..
T Consensus 265 ~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred HhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCcc
Confidence 2 256777777666531 22344555556677788888877643
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.86 E-value=0.0036 Score=54.80 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=57.6
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCC--CCc-ccCccccCCCCCcEEecCCccccc---chhhhhcccc
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIP--SLK-CLPSLLCTILNLQTLEMPSSYVDH---SLEDIWMMQK 235 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~l~~~~l~~---lp~~~~~L~~ 235 (397)
..+..|..|++.+..++.+ ..+..|++|++|.++.| ++. .++....++++|++|++++|+++. +++ +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence 4444555555666555433 23456789999999988 443 566666677999999999995543 332 566778
Q ss_pred CcEEEecCCCCCCCC
Q 045321 236 LMHLNFGSITLPAPP 250 (397)
Q Consensus 236 L~~L~l~~~~~~~~~ 250 (397)
|..|++. +|....+
T Consensus 118 L~~Ldl~-n~~~~~l 131 (260)
T KOG2739|consen 118 LKSLDLF-NCSVTNL 131 (260)
T ss_pred hhhhhcc-cCCcccc
Confidence 8888888 7765443
No 71
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.47 E-value=0.025 Score=27.46 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=5.3
Q ss_pred CCceEecCCCCCccc
Q 045321 189 LLKHLKLNIPSLKCL 203 (397)
Q Consensus 189 ~L~~L~l~~~~i~~l 203 (397)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344444444444443
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.42 E-value=0.024 Score=27.54 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=6.6
Q ss_pred CCcEEecCCcccccch
Q 045321 212 NLQTLEMPSSYVDHSL 227 (397)
Q Consensus 212 ~L~~L~l~~~~l~~lp 227 (397)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.22 E-value=0.007 Score=51.06 Aligned_cols=80 Identities=21% Similarity=0.213 Sum_probs=46.5
Q ss_pred CcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc-CCCCCccccccCcCCc
Q 045321 260 LIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQ 337 (397)
Q Consensus 260 L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~ 337 (397)
.+.++.+++.+ ...-.+.+..++.++.|.+..|.++..-.+ .++...++|+.|+|++|. +++..+..+..+++|+
T Consensus 103 IeaVDAsds~I---~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSI---MYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchH---HHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence 34466665533 233344556666666666666643332221 122237788888888774 5556666677777777
Q ss_pred eEEEe
Q 045321 338 VLKLK 342 (397)
Q Consensus 338 ~L~L~ 342 (397)
.|.|.
T Consensus 180 ~L~l~ 184 (221)
T KOG3864|consen 180 RLHLY 184 (221)
T ss_pred HHHhc
Confidence 77773
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.003 Score=53.25 Aligned_cols=83 Identities=16% Similarity=0.181 Sum_probs=40.2
Q ss_pred ceEEEEecccCCCCCccccccCcCCceEEEeccccc-CceeEEeCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccc
Q 045321 312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL-GRKLACVGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESL 389 (397)
Q Consensus 312 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~-~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L 389 (397)
++.++-+++.+..+.+..+.++++++.|.+.++.+. +..+... .+..++|+.|+|++|+.+++-- .....+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 344555555554455555666666666666332221 1111111 2345666666666666554321 112345666666
Q ss_pred cccccc
Q 045321 390 IVNPCA 395 (397)
Q Consensus 390 ~i~~C~ 395 (397)
.+++-|
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 655543
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.67 E-value=0.23 Score=39.09 Aligned_cols=78 Identities=17% Similarity=0.229 Sum_probs=27.0
Q ss_pred hcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCc
Q 045321 161 CEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLM 237 (397)
Q Consensus 161 ~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~ 237 (397)
|..++.|+.+.+.++ +..++ ..+.++..++++.+.. .+..++.. +..+++|+.+++..+ +..++.. +.+. +|+
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~ 106 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK 106 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence 355555555555443 33332 2233444455555543 33333322 223455555555332 3333332 3333 444
Q ss_pred EEEec
Q 045321 238 HLNFG 242 (397)
Q Consensus 238 ~L~l~ 242 (397)
.+.+.
T Consensus 107 ~i~~~ 111 (129)
T PF13306_consen 107 EINIP 111 (129)
T ss_dssp EEE-T
T ss_pred EEEEC
Confidence 44443
No 76
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.40 E-value=0.0022 Score=55.18 Aligned_cols=81 Identities=15% Similarity=0.044 Sum_probs=55.4
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..++..++||++.+.+..+-..++.+..|..|+++.+.+..+|++.+.+..+..+++..|+....|.+.++++.+++++.
T Consensus 39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence 55666677777777665555556666666667777677777777777776677777666666777777777777777666
Q ss_pred c
Q 045321 242 G 242 (397)
Q Consensus 242 ~ 242 (397)
-
T Consensus 119 k 119 (326)
T KOG0473|consen 119 K 119 (326)
T ss_pred c
Confidence 5
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.66 E-value=0.15 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=9.3
Q ss_pred CCCceEecCCCCCcccCcc
Q 045321 188 ILLKHLKLNIPSLKCLPSL 206 (397)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~~ 206 (397)
.+|++|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.66 E-value=0.15 Score=27.67 Aligned_cols=19 Identities=32% Similarity=0.338 Sum_probs=9.3
Q ss_pred CCCceEecCCCCCcccCcc
Q 045321 188 ILLKHLKLNIPSLKCLPSL 206 (397)
Q Consensus 188 ~~L~~L~l~~~~i~~lp~~ 206 (397)
.+|++|++++|.++.+|+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3445555555555555443
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.26 E-value=0.25 Score=26.77 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCCCcEEecCCcccccchhh
Q 045321 210 ILNLQTLEMPSSYVDHSLED 229 (397)
Q Consensus 210 l~~L~~L~l~~~~l~~lp~~ 229 (397)
+++|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45788888888888888765
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.26 E-value=0.25 Score=26.77 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=15.4
Q ss_pred CCCCcEEecCCcccccchhh
Q 045321 210 ILNLQTLEMPSSYVDHSLED 229 (397)
Q Consensus 210 l~~L~~L~l~~~~l~~lp~~ 229 (397)
+++|++|++.+|.+..+|.+
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 45788888888888888765
No 81
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.32 E-value=0.013 Score=50.59 Aligned_cols=86 Identities=8% Similarity=-0.011 Sum_probs=74.0
Q ss_pred ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCc
Q 045321 182 LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLI 261 (397)
Q Consensus 182 ~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~ 261 (397)
..+...+.-+.||++.+++..+-..++.++.|..|+++.+.+..+|...+.+..+++++.. ++.....|.+.+.++.++
T Consensus 36 ~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~-~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASH-KNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhh-ccchhhCCccccccCCcc
Confidence 3466777888999999988888888888999999999999999999999999999999998 776778888888888888
Q ss_pred EEEcCCC
Q 045321 262 FISALNP 268 (397)
Q Consensus 262 ~l~l~~~ 268 (397)
..+..++
T Consensus 115 ~~e~k~~ 121 (326)
T KOG0473|consen 115 KNEQKKT 121 (326)
T ss_pred hhhhccC
Confidence 8777665
No 82
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.38 E-value=1.5 Score=34.30 Aligned_cols=111 Identities=18% Similarity=0.163 Sum_probs=53.2
Q ss_pred CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCC
Q 045321 115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILL 190 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L 190 (397)
.+++.+.+. +....+... ..+++++.+.+... .. .+ ...|..++.++.+.+.. .+..++ ..+..+.+|
T Consensus 12 ~~l~~i~~~-~~~~~I~~~~F~~~~~l~~i~~~~~-~~-----~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 12 SNLESITFP-NTIKKIGENAFSNCTSLKSINFPNN-LT-----SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT--EEEET-ST--EE-TTTTTT-TT-SEEEESST-TS-----CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred CCCCEEEEC-CCeeEeChhhccccccccccccccc-cc-----ccceeeeecccccccccccc-cccccccccccccccc
Confidence 356666665 443333333 66778999888764 22 44 45558887899999976 444444 345668899
Q ss_pred ceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccC
Q 045321 191 KHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKL 236 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L 236 (397)
+.+.+..+ +..++.. +.+. +|+.+.+.. .+..++.. +.+.++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 99998764 6655543 4454 888887765 44444433 4444444
No 83
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=83.36 E-value=0.58 Score=25.39 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=9.6
Q ss_pred cccccccccccccC
Q 045321 383 MPKLESLIVNPCAY 396 (397)
Q Consensus 383 ~p~L~~L~i~~C~~ 396 (397)
+|+|+.|++++|++
T Consensus 1 c~~L~~L~l~~C~~ 14 (26)
T smart00367 1 CPNLRELDLSGCTN 14 (26)
T ss_pred CCCCCEeCCCCCCC
Confidence 36677777777765
No 84
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=79.34 E-value=1.3 Score=24.11 Aligned_cols=17 Identities=35% Similarity=0.501 Sum_probs=10.7
Q ss_pred CCceEecCCCCCcccCc
Q 045321 189 LLKHLKLNIPSLKCLPS 205 (397)
Q Consensus 189 ~L~~L~l~~~~i~~lp~ 205 (397)
+|++|++++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45666666666666664
No 85
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=69.37 E-value=0.34 Score=25.69 Aligned_cols=14 Identities=36% Similarity=0.510 Sum_probs=6.9
Q ss_pred CCceEEEEecccCC
Q 045321 310 LSLSHLSLSNTELM 323 (397)
Q Consensus 310 ~~L~~L~L~~~~l~ 323 (397)
++|++|+|++|.+.
T Consensus 2 ~~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 2 PNLETLDLSNNQIT 15 (24)
T ss_dssp TT-SEEE-TSSBEH
T ss_pred CCCCEEEccCCcCC
Confidence 45666666666543
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.06 E-value=5.1 Score=21.81 Aligned_cols=14 Identities=29% Similarity=0.351 Sum_probs=7.4
Q ss_pred CCCceEecCCCCCc
Q 045321 188 ILLKHLKLNIPSLK 201 (397)
Q Consensus 188 ~~L~~L~l~~~~i~ 201 (397)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555543
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=47.90 E-value=15 Score=20.14 Aligned_cols=12 Identities=33% Similarity=0.412 Sum_probs=6.5
Q ss_pred CCceEecCCCCC
Q 045321 189 LLKHLKLNIPSL 200 (397)
Q Consensus 189 ~L~~L~l~~~~i 200 (397)
+|++|+|++|.+
T Consensus 3 ~L~~LdL~~N~i 14 (28)
T smart00368 3 SLRELDLSNNKL 14 (28)
T ss_pred ccCEEECCCCCC
Confidence 455555555554
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=42.52 E-value=7.3 Score=38.39 Aligned_cols=12 Identities=33% Similarity=0.398 Sum_probs=7.4
Q ss_pred CCCceEEEEecc
Q 045321 309 PLSLSHLSLSNT 320 (397)
Q Consensus 309 l~~L~~L~L~~~ 320 (397)
.|+|..|+|++|
T Consensus 243 apklk~L~LS~N 254 (585)
T KOG3763|consen 243 APKLKTLDLSHN 254 (585)
T ss_pred cchhheeecccc
Confidence 556666666666
No 89
>PF14162 YozD: YozD-like protein
Probab=35.17 E-value=48 Score=21.23 Aligned_cols=28 Identities=18% Similarity=0.341 Sum_probs=18.9
Q ss_pred hcCCCCC--CHHHHHHHHHHHHHhCCceee
Q 045321 45 AEGFIQY--NSEETAEHYLKELIHRGFFQV 72 (397)
Q Consensus 45 a~g~i~~--~~~~~~~~~~~~L~~~~ll~~ 72 (397)
..||++. ..+++|..-|+-|+.+|++..
T Consensus 23 kRGyvP~e~El~eiADItFeYll~K~iIdE 52 (57)
T PF14162_consen 23 KRGYVPTEEELEEIADITFEYLLEKCIIDE 52 (57)
T ss_pred HccCCCcHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4577763 666777777777777777643
No 90
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=34.47 E-value=28 Score=17.67 Aligned_cols=16 Identities=25% Similarity=0.227 Sum_probs=7.8
Q ss_pred CceEecCCCCCcccCc
Q 045321 190 LKHLKLNIPSLKCLPS 205 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~ 205 (397)
|..|++.+++++.+++
T Consensus 2 LVeL~m~~S~lekLW~ 17 (20)
T PF07725_consen 2 LVELNMPYSKLEKLWE 17 (20)
T ss_pred cEEEECCCCChHHhcC
Confidence 4445555555544443
No 91
>PF15385 SARG: Specifically androgen-regulated gene protein
Probab=30.78 E-value=24 Score=34.72 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=14.9
Q ss_pred ccccchhhhHHHHhhh
Q 045321 10 SVWELSFHLKACGIYL 25 (397)
Q Consensus 10 SY~~L~~~lk~cFl~~ 25 (397)
|||+|..+.|.|.+|+
T Consensus 7 Sl~~LS~EEkecLlFl 22 (497)
T PF15385_consen 7 SLDYLSAEEKECLLFL 22 (497)
T ss_pred cccccchhhHHHHHHH
Confidence 8999999999999885
No 92
>PRK04841 transcriptional regulator MalT; Provisional
Probab=26.12 E-value=2e+02 Score=30.94 Aligned_cols=73 Identities=18% Similarity=0.143 Sum_probs=49.4
Q ss_pred cccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEEeCHHH
Q 045321 11 VWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYVPSLV 90 (397)
Q Consensus 11 Y~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~mhdli 90 (397)
++.||++.+..+...|+++ .++ .++...-. | .+.+...+++|...+++...... .+ ..|++|+++
T Consensus 260 ~~~l~~~~~~~l~~~a~~~---~~~-~~l~~~l~--~------~~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~ 324 (903)
T PRK04841 260 LDNVDLETRHFLLRCSVLR---SMN-DALIVRVT--G------EENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLF 324 (903)
T ss_pred HhcCCHHHHHHHHHhcccc---cCC-HHHHHHHc--C------CCcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHH
Confidence 6889999999999999986 344 23333221 1 12246789999999997543211 11 468899999
Q ss_pred HHHHHHHh
Q 045321 91 YYSLLLVA 98 (397)
Q Consensus 91 ~dl~~~~~ 98 (397)
++......
T Consensus 325 r~~l~~~l 332 (903)
T PRK04841 325 ASFLRHRC 332 (903)
T ss_pred HHHHHHHH
Confidence 99988764
No 93
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=23.44 E-value=5.1 Score=39.53 Aligned_cols=79 Identities=19% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCeeEEEEcCCCCcc-----cccccccCCCC-CceEecCCCCCc-----ccCccccCC-CCCcEEecCCcccc-----cc
Q 045321 164 FKYLRLLNLGYAVLD-----QFPLGLENLIL-LKHLKLNIPSLK-----CLPSLLCTI-LNLQTLEMPSSYVD-----HS 226 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~-----~lp~~~~~l~~-L~~L~l~~~~i~-----~lp~~~~~l-~~L~~L~l~~~~l~-----~l 226 (397)
..+++.|++++|.++ .+-..+..... ++.|++..|.+. .+.+.+..+ ..++++++..|++. .+
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L 282 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL 282 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence 555666666666644 11122333333 444666655543 233334444 55666666666332 23
Q ss_pred hhhhhccccCcEEEec
Q 045321 227 LEDIWMMQKLMHLNFG 242 (397)
Q Consensus 227 p~~~~~L~~L~~L~l~ 242 (397)
...+...+.++.+.+.
T Consensus 283 ~~~l~~~~~l~~l~l~ 298 (478)
T KOG4308|consen 283 AEVLVSCRQLEELSLS 298 (478)
T ss_pred HHHHhhhHHHHHhhcc
Confidence 4444455566666665
No 94
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.09 E-value=2.1e+02 Score=18.15 Aligned_cols=52 Identities=21% Similarity=0.219 Sum_probs=29.9
Q ss_pred cchhhhHHHHhhhccCCCCC--ccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCce
Q 045321 13 ELSFHLKACGIYLCVFPPSI--KISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFF 70 (397)
Q Consensus 13 ~L~~~lk~cFl~~a~fp~~~--~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll 70 (397)
+|++..+..+.+++-|..+. .+...+-+.-.. |-.......++++|++++++
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~------g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL------GVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH------CcCHHHHHHHHHHHHHCcCC
Confidence 56777788888876654221 222112121212 21356677899999999875
Done!