Query 045321
Match_columns 397
No_of_seqs 303 out of 3297
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 21:28:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045321.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045321hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.9 6.6E-25 2.2E-29 204.4 9.8 221 134-368 78-309 (328)
2 3o6n_A APL1; leucine-rich repe 99.9 9E-24 3.1E-28 201.5 15.6 260 114-394 44-328 (390)
3 4fmz_A Internalin; leucine ric 99.9 5.2E-23 1.8E-27 193.0 18.6 259 114-395 65-344 (347)
4 1ogq_A PGIP-2, polygalacturona 99.9 4.9E-24 1.7E-28 197.2 11.2 247 137-396 50-303 (313)
5 4fcg_A Uncharacterized protein 99.9 5.8E-24 2E-28 198.0 11.6 219 164-391 80-308 (328)
6 3v47_A TOLL-like receptor 5B a 99.9 1.3E-23 4.5E-28 204.4 14.2 270 114-395 29-406 (455)
7 4fmz_A Internalin; leucine ric 99.9 5.9E-23 2E-27 192.6 17.9 258 114-395 43-322 (347)
8 2id5_A Lingo-1, leucine rich r 99.9 5.8E-23 2E-27 201.1 16.8 269 114-395 31-331 (477)
9 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.1E-27 192.5 19.0 244 134-395 42-306 (390)
10 3oja_B Anopheles plasmodium-re 99.9 3.1E-23 1E-27 208.6 14.2 259 115-394 51-334 (597)
11 4ecn_A Leucine-rich repeat pro 99.9 3.4E-23 1.2E-27 214.3 14.7 151 114-270 447-631 (876)
12 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-22 3.7E-27 205.0 17.7 124 114-242 31-161 (606)
13 4eco_A Uncharacterized protein 99.9 2.8E-23 9.7E-28 210.2 13.1 152 114-270 248-414 (636)
14 4eco_A Uncharacterized protein 99.9 2.6E-23 8.9E-28 210.5 11.6 171 114-294 205-411 (636)
15 3rgz_A Protein brassinosteroid 99.9 9.8E-23 3.4E-27 210.7 15.3 249 136-395 393-715 (768)
16 3t6q_A CD180 antigen; protein- 99.9 2.9E-22 1E-26 201.9 17.8 135 230-370 274-435 (606)
17 1ogq_A PGIP-2, polygalacturona 99.9 2.5E-23 8.6E-28 192.4 9.2 245 115-373 50-304 (313)
18 3rgz_A Protein brassinosteroid 99.9 1.9E-22 6.6E-27 208.5 15.8 274 114-395 199-549 (768)
19 3t6q_A CD180 antigen; protein- 99.9 9.4E-22 3.2E-26 198.2 19.9 226 166-395 255-511 (606)
20 4ecn_A Leucine-rich repeat pro 99.9 3.1E-22 1E-26 207.2 15.5 271 114-395 490-838 (876)
21 3oja_B Anopheles plasmodium-re 99.9 1E-21 3.6E-26 197.5 18.5 245 134-395 48-312 (597)
22 2z63_A TOLL-like receptor 4, v 99.9 9.9E-22 3.4E-26 196.5 17.5 114 278-394 366-504 (570)
23 3j0a_A TOLL-like receptor 5; m 99.9 1E-21 3.6E-26 205.1 18.0 149 114-267 23-183 (844)
24 1xku_A Decorin; proteoglycan, 99.9 1.7E-21 5.8E-26 181.5 16.2 264 114-394 51-329 (330)
25 1o6v_A Internalin A; bacterial 99.9 3E-21 1E-25 188.4 18.6 103 115-226 46-149 (466)
26 3bz5_A Internalin-J, INLJ; leu 99.9 5.3E-21 1.8E-25 185.8 19.3 205 114-348 41-247 (457)
27 2ft3_A Biglycan; proteoglycan, 99.9 4.6E-22 1.6E-26 185.5 11.3 265 114-396 53-332 (332)
28 2id5_A Lingo-1, leucine rich r 99.9 6.2E-22 2.1E-26 193.8 12.6 248 114-371 55-331 (477)
29 2z7x_B TOLL-like receptor 1, v 99.9 1.1E-21 3.9E-26 194.0 14.3 265 114-394 20-409 (520)
30 1xku_A Decorin; proteoglycan, 99.9 9.6E-21 3.3E-25 176.4 19.0 241 135-395 50-304 (330)
31 3vq2_A TLR4, TOLL-like recepto 99.9 1.6E-21 5.3E-26 196.6 14.4 262 115-395 285-556 (606)
32 3bz5_A Internalin-J, INLJ; leu 99.9 6.3E-21 2.1E-25 185.3 17.9 246 114-396 63-319 (457)
33 2z66_A Variable lymphocyte rec 99.9 7.1E-22 2.4E-26 182.0 10.7 224 135-371 26-259 (306)
34 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 6.1E-21 2.1E-25 190.6 18.3 104 114-224 51-159 (562)
35 1o6v_A Internalin A; bacterial 99.9 3.5E-21 1.2E-25 187.9 15.6 194 134-345 43-276 (466)
36 3v47_A TOLL-like receptor 5B a 99.9 4.4E-21 1.5E-25 186.5 16.1 247 135-394 28-381 (455)
37 2z66_A Variable lymphocyte rec 99.9 2.6E-21 8.8E-26 178.3 13.7 225 114-347 27-261 (306)
38 2z63_A TOLL-like receptor 4, v 99.9 4E-21 1.4E-25 192.1 16.1 149 114-268 27-187 (570)
39 2ft3_A Biglycan; proteoglycan, 99.9 1.3E-21 4.4E-26 182.5 10.8 258 116-395 34-305 (332)
40 2z81_A CD282 antigen, TOLL-lik 99.9 7.6E-22 2.6E-26 196.5 9.4 149 114-268 25-182 (549)
41 1ziw_A TOLL-like receptor 3; i 99.9 2.6E-21 8.8E-26 197.6 13.3 270 114-394 24-363 (680)
42 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.4E-20 4.7E-25 188.0 17.2 122 118-248 34-159 (562)
43 2z80_A TOLL-like receptor 2, v 99.8 3.6E-21 1.2E-25 181.0 10.0 248 135-395 50-312 (353)
44 3zyj_A Leucine-rich repeat-con 99.8 5.1E-20 1.7E-24 178.4 17.9 220 114-345 63-290 (440)
45 3o53_A Protein LRIM1, AGAP0063 99.8 2.5E-21 8.6E-26 179.3 7.4 239 134-395 31-273 (317)
46 3zyi_A Leucine-rich repeat-con 99.8 6.7E-20 2.3E-24 178.1 17.8 199 134-344 96-300 (452)
47 3zyi_A Leucine-rich repeat-con 99.8 4.4E-20 1.5E-24 179.4 15.2 223 134-371 72-301 (452)
48 3zyj_A Leucine-rich repeat-con 99.8 6.1E-20 2.1E-24 177.8 15.9 223 134-371 61-290 (440)
49 2z81_A CD282 antigen, TOLL-lik 99.8 7.9E-21 2.7E-25 189.1 9.9 129 136-270 25-160 (549)
50 2z7x_B TOLL-like receptor 1, v 99.8 2.8E-20 9.7E-25 183.9 13.5 81 114-201 44-128 (520)
51 1ozn_A Reticulon 4 receptor; N 99.8 1.4E-19 4.6E-24 165.0 16.5 203 134-347 29-238 (285)
52 1ziw_A TOLL-like receptor 3; i 99.8 1.1E-19 3.9E-24 185.5 16.9 272 114-395 48-441 (680)
53 4g8a_A TOLL-like receptor 4; l 99.8 1.1E-19 3.9E-24 183.5 16.4 129 114-248 51-186 (635)
54 1ozn_A Reticulon 4 receptor; N 99.8 1.5E-19 5.2E-24 164.7 15.6 201 163-371 30-236 (285)
55 2z80_A TOLL-like receptor 2, v 99.8 5.7E-20 1.9E-24 172.8 12.9 244 114-371 51-312 (353)
56 3j0a_A TOLL-like receptor 5; m 99.8 1.2E-19 4.1E-24 189.6 16.5 248 135-395 22-373 (844)
57 3o53_A Protein LRIM1, AGAP0063 99.8 4.7E-20 1.6E-24 170.7 11.0 219 158-395 27-248 (317)
58 3oja_A Leucine-rich immune mol 99.8 2E-20 6.7E-25 183.4 8.2 236 134-392 31-270 (487)
59 3g06_A SSPH2 (leucine-rich rep 99.8 1.1E-18 3.8E-23 174.9 18.8 218 137-395 61-295 (622)
60 2z62_A TOLL-like receptor 4, v 99.8 6E-19 2.1E-23 159.9 14.8 200 136-346 27-236 (276)
61 1h6u_A Internalin H; cell adhe 99.8 5.1E-19 1.7E-23 163.1 14.4 194 134-348 38-231 (308)
62 1h6u_A Internalin H; cell adhe 99.8 5.9E-19 2E-23 162.6 13.5 191 162-371 38-228 (308)
63 1jl5_A Outer protein YOPM; leu 99.8 3.9E-18 1.3E-22 165.5 18.3 119 137-270 131-249 (454)
64 3oja_A Leucine-rich immune mol 99.8 5.5E-19 1.9E-23 173.1 11.9 214 163-395 32-248 (487)
65 1wwl_A Monocyte differentiatio 99.8 6.8E-20 2.3E-24 169.3 5.2 216 167-395 65-307 (312)
66 1p9a_G Platelet glycoprotein I 99.8 1.6E-18 5.3E-23 158.3 14.2 198 134-346 7-207 (290)
67 3rfs_A Internalin B, repeat mo 99.8 6.9E-19 2.3E-23 159.3 10.9 203 134-381 38-243 (272)
68 2o6q_A Variable lymphocyte rec 99.8 3.3E-18 1.1E-22 154.6 14.8 195 138-345 17-216 (270)
69 2xwt_C Thyrotropin receptor; s 99.8 1.5E-18 5.2E-23 153.8 10.7 94 166-261 32-130 (239)
70 2z62_A TOLL-like receptor 4, v 99.8 2.4E-18 8.1E-23 156.0 12.0 198 165-371 28-235 (276)
71 2o6q_A Variable lymphocyte rec 99.8 7.6E-18 2.6E-22 152.2 15.2 195 167-371 18-216 (270)
72 1jl5_A Outer protein YOPM; leu 99.8 1.8E-17 6.1E-22 160.9 18.0 222 115-371 131-368 (454)
73 4g8a_A TOLL-like receptor 4; l 99.8 9.9E-18 3.4E-22 169.3 16.3 127 136-268 51-183 (635)
74 2ast_B S-phase kinase-associat 99.7 1.3E-19 4.4E-24 169.0 0.9 201 137-344 70-282 (336)
75 1p9a_G Platelet glycoprotein I 99.7 1.4E-17 4.8E-22 152.0 14.3 196 115-324 10-209 (290)
76 3rfs_A Internalin B, repeat mo 99.7 6.8E-18 2.3E-22 152.7 11.1 202 114-334 40-246 (272)
77 2xwt_C Thyrotropin receptor; s 99.7 8E-18 2.7E-22 149.2 11.0 196 135-371 29-237 (239)
78 1wwl_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 156.1 8.0 198 163-371 93-307 (312)
79 2ast_B S-phase kinase-associat 99.7 5.3E-19 1.8E-23 164.8 0.6 221 137-370 47-282 (336)
80 3g06_A SSPH2 (leucine-rich rep 99.7 1.6E-16 5.3E-21 159.3 17.8 218 137-395 40-272 (622)
81 1z7x_W Ribonuclease inhibitor; 99.7 7.1E-19 2.4E-23 171.1 -0.1 206 134-345 53-295 (461)
82 1h6t_A Internalin B; cell adhe 99.7 6.8E-17 2.3E-21 147.5 12.1 170 135-323 44-213 (291)
83 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.9E-21 146.1 13.6 173 162-349 43-215 (291)
84 3ogk_B Coronatine-insensitive 99.7 4.7E-18 1.6E-22 170.6 3.1 61 333-395 462-524 (592)
85 3m19_A Variable lymphocyte rec 99.7 3.5E-16 1.2E-20 139.6 14.5 174 167-348 16-193 (251)
86 1z7x_W Ribonuclease inhibitor; 99.7 2.4E-18 8.3E-23 167.4 0.1 229 164-395 141-409 (461)
87 2ca6_A RAN GTPase-activating p 99.7 3.6E-18 1.2E-22 162.5 -0.0 234 134-371 29-314 (386)
88 2ca6_A RAN GTPase-activating p 99.7 2.7E-18 9.3E-23 163.3 -2.1 233 156-395 23-314 (386)
89 1m9s_A Internalin B; cell inva 99.7 2.6E-16 9E-21 157.4 12.0 179 134-331 40-218 (605)
90 4glp_A Monocyte differentiatio 99.7 1.9E-16 6.6E-21 145.9 9.4 220 137-370 64-304 (310)
91 1m9s_A Internalin B; cell inva 99.7 4.4E-16 1.5E-20 155.7 12.3 173 162-349 40-212 (605)
92 4ezg_A Putative uncharacterize 99.7 4.1E-16 1.4E-20 133.9 10.5 152 185-346 41-193 (197)
93 3ogk_B Coronatine-insensitive 99.6 3.4E-17 1.2E-21 164.3 3.4 276 114-395 111-474 (592)
94 4glp_A Monocyte differentiatio 99.6 1.8E-16 6.1E-21 146.1 6.6 200 135-348 89-308 (310)
95 2p1m_B Transport inhibitor res 99.6 5E-17 1.7E-21 163.1 2.5 127 114-242 104-243 (594)
96 3goz_A Leucine-rich repeat-con 99.6 2E-16 6.7E-21 149.1 5.7 234 134-370 19-294 (362)
97 1xeu_A Internalin C; cellular 99.6 4.7E-16 1.6E-20 139.8 7.9 147 162-322 38-184 (263)
98 3m19_A Variable lymphocyte rec 99.6 4.9E-15 1.7E-19 132.2 13.1 154 166-325 36-194 (251)
99 2o6s_A Variable lymphocyte rec 99.6 2.5E-15 8.7E-20 130.0 10.5 159 165-335 28-190 (208)
100 4b8c_D Glucose-repressible alc 99.6 5.2E-16 1.8E-20 158.9 6.8 165 114-282 172-337 (727)
101 4ezg_A Putative uncharacterize 99.6 5.6E-15 1.9E-19 126.8 11.6 127 135-270 42-171 (197)
102 4ay9_X Follicle-stimulating ho 99.6 7.6E-15 2.6E-19 137.6 13.0 215 165-392 30-254 (350)
103 2o6s_A Variable lymphocyte rec 99.6 5.6E-15 1.9E-19 127.9 11.2 146 168-344 10-158 (208)
104 1xeu_A Internalin C; cellular 99.6 5E-15 1.7E-19 133.0 10.4 164 167-346 21-184 (263)
105 4ay9_X Follicle-stimulating ho 99.6 2.4E-15 8.2E-20 141.0 8.0 219 168-396 12-235 (350)
106 2v9t_B SLIT homolog 2 protein 99.6 2.3E-14 7.8E-19 125.2 13.1 147 168-345 14-163 (220)
107 3cvr_A Invasion plasmid antige 99.6 1.3E-14 4.3E-19 143.8 12.3 177 138-348 60-244 (571)
108 3cvr_A Invasion plasmid antige 99.5 1.7E-14 5.7E-19 143.0 11.9 176 165-371 59-241 (571)
109 2a5y_B CED-4; apoptosis; HET: 99.5 3.9E-15 1.3E-19 147.7 6.5 92 4-103 363-473 (549)
110 1dce_A Protein (RAB geranylger 99.5 8.5E-17 2.9E-21 160.0 -5.6 178 162-348 346-547 (567)
111 2xot_A Amphoterin-induced prot 99.5 1.4E-14 4.6E-19 136.4 9.8 169 169-345 22-200 (361)
112 3e6j_A Variable lymphocyte rec 99.5 6.3E-14 2.2E-18 123.1 13.2 103 165-268 40-145 (229)
113 2v70_A SLIT-2, SLIT homolog 2 99.5 5.3E-14 1.8E-18 122.9 12.4 147 168-345 14-164 (220)
114 3goz_A Leucine-rich repeat-con 99.5 8.8E-15 3E-19 137.8 7.2 233 114-349 21-299 (362)
115 2je0_A Acidic leucine-rich nuc 99.5 2.9E-14 1E-18 116.4 8.7 126 163-293 15-148 (149)
116 2ell_A Acidic leucine-rich nuc 99.5 3.5E-14 1.2E-18 118.5 8.9 126 163-294 22-156 (168)
117 3e6j_A Variable lymphocyte rec 99.5 8.5E-14 2.9E-18 122.3 11.7 126 137-268 40-169 (229)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 1.8E-13 6.1E-18 119.5 12.6 104 166-270 33-141 (220)
119 2p1m_B Transport inhibitor res 99.5 8.9E-16 3E-20 154.0 -2.9 129 134-266 102-243 (594)
120 2v9t_B SLIT homolog 2 protein 99.5 1.8E-13 6.1E-18 119.5 11.5 102 166-268 33-138 (220)
121 2je0_A Acidic leucine-rich nuc 99.5 4.6E-14 1.6E-18 115.2 6.2 128 134-266 14-148 (149)
122 2ell_A Acidic leucine-rich nuc 99.5 5.4E-14 1.8E-18 117.3 6.5 130 134-268 21-157 (168)
123 1a9n_A U2A', U2A'; complex (nu 99.5 1.5E-13 5.2E-18 115.5 8.8 103 163-268 17-123 (176)
124 1a9n_A U2A', U2A'; complex (nu 99.4 1.1E-13 3.7E-18 116.4 7.4 129 134-269 16-151 (176)
125 2xot_A Amphoterin-induced prot 99.4 2.6E-13 8.9E-18 127.6 10.5 151 136-295 38-199 (361)
126 1w8a_A SLIT protein; signaling 99.4 6.7E-13 2.3E-17 113.2 10.8 120 168-293 11-134 (192)
127 1dce_A Protein (RAB geranylger 99.4 5.4E-13 1.8E-17 132.6 10.2 99 190-294 443-542 (567)
128 2wfh_A SLIT homolog 2 protein 99.4 2.1E-12 7.3E-17 110.2 11.8 100 168-270 13-114 (193)
129 1ds9_A Outer arm dynein; leuci 99.3 3.7E-14 1.3E-18 121.7 -2.5 112 156-270 39-152 (198)
130 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.6E-16 105.8 11.5 105 165-270 31-138 (193)
131 4b8c_D Glucose-repressible alc 99.3 2.7E-12 9.1E-17 131.4 8.1 120 171-295 207-326 (727)
132 1w8a_A SLIT protein; signaling 99.3 8.8E-12 3E-16 106.2 9.3 104 166-270 30-138 (192)
133 2o6r_A Variable lymphocyte rec 99.3 4.4E-11 1.5E-15 100.4 11.7 98 168-268 10-110 (177)
134 2r9u_A Variable lymphocyte rec 99.2 6.4E-11 2.2E-15 99.2 10.4 100 168-270 15-117 (174)
135 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.6E-15 98.0 11.4 106 164-270 27-136 (177)
136 3g39_A Variable lymphocyte rec 99.2 8.1E-11 2.8E-15 98.1 10.3 101 167-270 11-114 (170)
137 1ds9_A Outer arm dynein; leuci 99.2 1.3E-12 4.3E-17 112.1 -1.3 120 167-293 25-148 (198)
138 2r9u_A Variable lymphocyte rec 99.1 2.2E-10 7.4E-15 95.9 7.3 107 140-254 15-124 (174)
139 3sb4_A Hypothetical leucine ri 99.0 9.1E-10 3.1E-14 101.9 9.9 101 257-366 225-327 (329)
140 3sfz_A APAF-1, apoptotic pepti 99.0 4.9E-10 1.7E-14 121.7 7.8 85 7-101 368-452 (1249)
141 3g39_A Variable lymphocyte rec 99.0 2.3E-09 7.9E-14 89.2 9.7 79 189-270 10-90 (170)
142 1vt4_I APAF-1 related killer D 98.9 4.8E-10 1.7E-14 115.2 4.7 78 7-95 359-437 (1221)
143 2ifg_A High affinity nerve gro 98.9 8.3E-09 2.8E-13 96.1 10.5 99 170-270 13-115 (347)
144 3un9_A NLR family member X1; l 98.8 1.8E-09 6.2E-14 101.5 3.4 134 136-270 71-223 (372)
145 3sb4_A Hypothetical leucine ri 98.8 3.8E-09 1.3E-13 97.7 4.9 240 135-390 23-327 (329)
146 4fdw_A Leucine rich hypothetic 98.7 3.1E-07 1.1E-11 87.1 16.0 190 166-370 158-355 (401)
147 4fdw_A Leucine rich hypothetic 98.7 6.7E-07 2.3E-11 84.8 18.1 230 136-392 112-353 (401)
148 2ifg_A High affinity nerve gro 98.7 3.9E-08 1.3E-12 91.5 8.8 89 156-246 23-114 (347)
149 1z6t_A APAF-1, apoptotic prote 98.6 3.7E-08 1.3E-12 98.5 7.6 82 7-98 368-449 (591)
150 3un9_A NLR family member X1; l 98.5 3.3E-08 1.1E-12 92.9 3.8 153 114-270 71-251 (372)
151 2ra8_A Uncharacterized protein 98.4 7.3E-08 2.5E-12 90.0 3.3 138 226-370 164-317 (362)
152 3e4g_A ATP synthase subunit S, 98.3 1.3E-07 4.4E-12 78.2 0.4 84 311-396 62-151 (176)
153 1io0_A Tropomodulin; LRR prote 98.2 1.7E-06 5.8E-11 72.7 6.3 109 134-242 33-159 (185)
154 1io0_A Tropomodulin; LRR prote 98.2 1.7E-06 5.9E-11 72.7 5.2 112 157-269 28-162 (185)
155 2ra8_A Uncharacterized protein 98.1 1.9E-06 6.4E-11 80.4 5.4 153 183-345 167-341 (362)
156 3rw6_A Nuclear RNA export fact 97.9 1.3E-05 4.4E-10 71.1 6.5 80 162-242 167-259 (267)
157 3e4g_A ATP synthase subunit S, 97.8 5.2E-05 1.8E-09 62.5 7.6 77 166-242 62-147 (176)
158 4fs7_A Uncharacterized protein 97.8 0.00017 5.8E-09 68.0 11.8 200 158-369 155-375 (394)
159 4fs7_A Uncharacterized protein 97.7 0.00079 2.7E-08 63.4 16.1 56 309-368 296-351 (394)
160 4gt6_A Cell surface protein; l 97.6 0.0018 6E-08 61.0 15.5 57 309-369 310-366 (394)
161 3rw6_A Nuclear RNA export fact 97.5 2.5E-05 8.5E-10 69.3 1.6 60 185-246 167-231 (267)
162 4gt6_A Cell surface protein; l 97.0 0.014 4.9E-07 54.6 14.7 80 280-368 306-386 (394)
163 4h09_A Hypothetical leucine ri 96.7 0.067 2.3E-06 49.6 16.9 74 115-197 46-122 (379)
164 4h09_A Hypothetical leucine ri 96.5 0.052 1.8E-06 50.3 14.2 33 309-341 285-317 (379)
165 3rfe_A Platelet glycoprotein I 95.4 0.027 9.2E-07 43.8 5.9 51 169-221 12-65 (130)
166 1pgv_A TMD-1, tropomodulin TMD 95.4 0.021 7.2E-07 47.8 5.4 86 134-220 38-135 (197)
167 3rfe_A Platelet glycoprotein I 94.8 0.043 1.5E-06 42.6 5.5 52 191-245 11-65 (130)
168 1pgv_A TMD-1, tropomodulin TMD 93.8 0.074 2.5E-06 44.4 5.0 86 157-242 33-134 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.91 E-value=6.6e-25 Score=204.37 Aligned_cols=221 Identities=19% Similarity=0.170 Sum_probs=132.5
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
....++++|.+.++... .+ +.+ ..+++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++
T Consensus 78 ~~~~~l~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~ 151 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLP-----QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNR 151 (328)
T ss_dssp HTSTTCCEEEEESSCCS-----SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTT
T ss_pred ccccceeEEEccCCCch-----hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcC
Confidence 34466666666666554 33 233 556666667776666666666666666677777766666666666666667
Q ss_pred CcEEecCCc-ccccchhhhhc---------cccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhc
Q 045321 213 LQTLEMPSS-YVDHSLEDIWM---------MQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLL 282 (397)
Q Consensus 213 L~~L~l~~~-~l~~lp~~~~~---------L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~ 282 (397)
|++|++++| .+..+|..++. +++|++|+++ +|....+|..++++++|+.+++++|.+ ..++..++
T Consensus 152 L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~lp~~l~~l~~L~~L~L~~N~l----~~l~~~l~ 226 (328)
T 4fcg_A 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPL----SALGPAIH 226 (328)
T ss_dssp CCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEE-EECCCCCCGGGGGCTTCCEEEEESSCC----CCCCGGGG
T ss_pred CCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECc-CCCcCcchHhhcCCCCCCEEEccCCCC----CcCchhhc
Confidence 777777666 55556655543 6666666666 666556666666666666666666654 34445566
Q ss_pred CCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321 283 GLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL 362 (397)
Q Consensus 283 ~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 362 (397)
.+++|+.|++++|.....++-+++. +++|++|++++|.+....+..++.+++|++|+|++|...+. ++.. ...+++|
T Consensus 227 ~l~~L~~L~Ls~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-iP~~-l~~L~~L 303 (328)
T 4fcg_A 227 HLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR-LPSL-IAQLPAN 303 (328)
T ss_dssp GCTTCCEEECTTCTTCCBCCCCTTC-CCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC-CCGG-GGGSCTT
T ss_pred cCCCCCEEECcCCcchhhhHHHhcC-CCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh-ccHH-HhhccCc
Confidence 6666666666665444444334455 66666666666655444555566666666666654444332 2333 4555555
Q ss_pred CEEEEe
Q 045321 363 TVLHLK 368 (397)
Q Consensus 363 ~~L~l~ 368 (397)
+.+.+.
T Consensus 304 ~~l~l~ 309 (328)
T 4fcg_A 304 CIILVP 309 (328)
T ss_dssp CEEECC
T ss_pred eEEeCC
Confidence 555554
No 2
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.91 E-value=9e-24 Score=201.53 Aligned_cols=260 Identities=19% Similarity=0.162 Sum_probs=146.0
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~ 189 (397)
..+++++.+..+.....+.. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+| ..++++++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 45667777763333333333 55677777777766654 33 333467777777777777776553 44677777
Q ss_pred CceEecCCCCCcccCccc-cCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCC
Q 045321 190 LKHLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALN 267 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~ 267 (397)
|++|++++|.+..+|..+ +++++|++|++++|.+..++. .++.+++|++|+++ ++....++ ++.+++|+.+++++
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~--~~~l~~L~~L~l~~ 195 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVSY 195 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECC-SSCCSBCC--GGGCTTCSEEECCS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECC-CCcCCccc--cccccccceeeccc
Confidence 777777777777776653 667777777777776666543 36677777777777 66544442 44555666666555
Q ss_pred CeeeEEeccHHhhhcCCCCCcEEEeecC----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCcc
Q 045321 268 PNLSCYHSGVSNSLLGLHKLECLKLVNE----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMP 328 (397)
Q Consensus 268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~ 328 (397)
|.+. .+...++|+.|+++++ ++|+.|.+ ++.. +++|++|++++|.+....+.
T Consensus 196 n~l~--------~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 196 NLLS--------TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp SCCS--------EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESG
T ss_pred cccc--------ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcC-CCCccEEECCCCcCCCcChh
Confidence 5321 1122334444444442 23444433 3334 56666666666665444445
Q ss_pred ccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321 329 IMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC 394 (397)
Q Consensus 329 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C 394 (397)
.++.+++|++|++++|... .++.. ...+++|+.|+++++ .+..++.....+++|+.|++++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~--~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N 328 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLV--ALNLY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHN 328 (390)
T ss_dssp GGTTCSSCCEEECCSSCCC--EEECS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSS
T ss_pred HccccccCCEEECCCCcCc--ccCcc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCC
Confidence 5666666666666554432 22333 345566666666654 24444333334445555544443
No 3
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.2e-23 Score=193.01 Aligned_cols=259 Identities=18% Similarity=0.208 Sum_probs=140.9
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~ 192 (397)
..+++++.+..+...+ ... ..+++|++|.+.++... .++.+ ..+++|++|++++|.+..+|. +..+++|++
T Consensus 65 ~~~L~~L~l~~n~i~~-~~~~~~l~~L~~L~L~~n~i~-----~~~~~-~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~ 136 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITD-ISPLSNLVKLTNLYIGTNKIT-----DISAL-QNLTNLRELYLNEDNISDISP-LANLTKMYS 136 (347)
T ss_dssp CTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCSEEECTTSCCCCCGG-GTTCTTCCE
T ss_pred cCCccEEEccCCcccc-chhhhcCCcCCEEEccCCccc-----CchHH-cCCCcCCEEECcCCcccCchh-hccCCceeE
Confidence 4455555555222222 222 45555555555555443 22333 555555555555555555444 555555555
Q ss_pred EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321 193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC 272 (397)
Q Consensus 193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i 272 (397)
|++++|.....+..+..+++|++|++++|.+..++. ++.+++|++|+++ +|....++. +..+++|+.+++++|.+
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~-~n~l~~~~~-~~~l~~L~~L~l~~n~l-- 211 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLN-YNQIEDISP-LASLTSLHYFTAYVNQI-- 211 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECT-TSCCCCCGG-GGGCTTCCEEECCSSCC--
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEcc-CCccccccc-ccCCCccceeecccCCC--
Confidence 555555322222335555555555555555444444 5555555555555 554444433 44555555555554432
Q ss_pred EeccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCcccccc
Q 045321 273 YHSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEK 332 (397)
Q Consensus 273 ~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~ 332 (397)
...+. +..+++|+.|+++++ ++|+.|.+ .+.. +++|++|++++|.+.. .+.+..
T Consensus 212 --~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~--~~~~~~ 285 (347)
T 4fmz_A 212 --TDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKD-LTKLKMLNVGSNQISD--ISVLNN 285 (347)
T ss_dssp --CCCGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC--CGGGGG
T ss_pred --CCCch-hhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhc-CCCcCEEEccCCccCC--ChhhcC
Confidence 11111 455566666666553 34444444 3444 7777777777777643 255777
Q ss_pred CcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 333 LPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 333 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+++|++|++++|....... .. ...+++|+.|++++|+ +..++. ...+|+|+.|++++|+
T Consensus 286 l~~L~~L~L~~n~l~~~~~-~~-l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 286 LSQLNSLFLNNNQLGNEDM-EV-IGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFANQV 344 (347)
T ss_dssp CTTCSEEECCSSCCCGGGH-HH-HHTCTTCSEEECCSSS-CCCCGG-GGGCTTCSEESSSCC-
T ss_pred CCCCCEEECcCCcCCCcCh-hH-hhccccCCEEEccCCc-cccccC-hhhhhccceeehhhhc
Confidence 7788888886665433321 12 3567888888888875 554433 5568888888888875
No 4
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.90 E-value=4.9e-24 Score=197.21 Aligned_cols=247 Identities=15% Similarity=0.151 Sum_probs=180.8
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCC-CCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGY-AVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL 213 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~-~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L 213 (397)
.+++.|.+.++...+ ...++..+..+++|++|++++ +.+. .+|..++++++|++|++++|.+. .+|..++++++|
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccC--CcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 567788887776641 002333448888888888884 6665 77888888888888888888887 788888888888
Q ss_pred cEEecCCcccc-cchhhhhccccCcEEEecCCCCCC-CCCccccCCC-CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321 214 QTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLK-NLIFISALNPNLSCYHSGVSNSLLGLHKLECL 290 (397)
Q Consensus 214 ~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~l~-~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L 290 (397)
++|++++|.+. .+|..++.+++|++|+++ ++... .+|..++.++ +|+.+++++|.+ ....+..+..++ |+.|
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~-~N~l~~~~p~~l~~l~~~L~~L~L~~N~l---~~~~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFD-GNRISGAIPDSYGSFSKLFTSMTISRNRL---TGKIPPTFANLN-LAFV 202 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECC-SSCCEEECCGGGGCCCTTCCEEECCSSEE---EEECCGGGGGCC-CSEE
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECc-CCcccCcCCHHHhhhhhcCcEEECcCCee---eccCChHHhCCc-ccEE
Confidence 88888888666 678888888888888888 77655 6788888887 888888888876 456677777776 8888
Q ss_pred EeecCCCeeEE-EeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321 291 KLVNESKLSRV-VLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS 369 (397)
Q Consensus 291 ~l~~~~~L~~L-~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 369 (397)
+++++ .+... .-.+.. +++|+.|++++|.+. ..++.+..+++|++|++++|.+.+. ++.. ...+++|+.|++++
T Consensus 203 ~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~~~~~~~~l~~L~~L~Ls~N~l~~~-~p~~-l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 203 DLSRN-MLEGDASVLFGS-DKNTQKIHLAKNSLA-FDLGKVGLSKNLNGLDLRNNRIYGT-LPQG-LTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCSS-EEEECCGGGCCT-TSCCSEEECCSSEEC-CBGGGCCCCTTCCEEECCSSCCEEC-CCGG-GGGCTTCCEEECCS
T ss_pred ECcCC-cccCcCCHHHhc-CCCCCEEECCCCcee-eecCcccccCCCCEEECcCCcccCc-CChH-HhcCcCCCEEECcC
Confidence 88874 23322 114566 888889999888874 3444577888999999977766433 2333 56788899999988
Q ss_pred CCCcCcEEECCCccccccccccccccC
Q 045321 370 MYWQDEWTMGAGAMPKLESLIVNPCAY 396 (397)
Q Consensus 370 ~~~l~~~~~~~~~~p~L~~L~i~~C~~ 396 (397)
++--..+|.. +.+++|+.+++.++|.
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKC 303 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSE
T ss_pred CcccccCCCC-ccccccChHHhcCCCC
Confidence 6422244443 6788899888888764
No 5
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=5.8e-24 Score=197.99 Aligned_cols=219 Identities=21% Similarity=0.183 Sum_probs=125.8
Q ss_pred CCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecC
Q 045321 164 FKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGS 243 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~ 243 (397)
...+++|+++++.++.+|..++++++|++|++++|.+..+|..++++++|++|++++|.+..+|..++++++|++|+++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~- 158 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR- 158 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE-
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC-
Confidence 3556666666666666666666666666666666666666666666666666666666555666666666666666666
Q ss_pred CC-CCCCCCccccC---------CCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCce
Q 045321 244 IT-LPAPPKNYSSS---------LKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLS 313 (397)
Q Consensus 244 ~~-~~~~~p~~i~~---------l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~ 313 (397)
+| ....+|..++. +++|+.+++++|.+ ..++..++.+++|+.|+++++ .+..+.-.+.. +++|+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l----~~lp~~l~~l~~L~~L~L~~N-~l~~l~~~l~~-l~~L~ 232 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI----RSLPASIANLQNLKSLKIRNS-PLSALGPAIHH-LPKLE 232 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC----CCCCGGGGGCTTCCEEEEESS-CCCCCCGGGGG-CTTCC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc----CcchHhhcCCCCCCEEEccCC-CCCcCchhhcc-CCCCC
Confidence 43 24445554443 66666666665544 245555666666666666653 23332223444 56666
Q ss_pred EEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccc
Q 045321 314 HLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIV 391 (397)
Q Consensus 314 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i 391 (397)
+|++++|.+....+..++.+++|++|+|++|...+. ++.. ...+++|+.|++++|+.++.+|...+.+++|+.+.+
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~p~~-~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l 308 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLD-IHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-CCTT-GGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEEC
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-cchh-hhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeC
Confidence 666666655455555566666666666644443322 2222 445666666666666655656555555555555544
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=1.3e-23 Score=204.39 Aligned_cols=270 Identities=16% Similarity=0.122 Sum_probs=185.6
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~ 189 (397)
+.++++|.+..+......+. ..+++|++|.+.++.... .+ +..|..+++|++|++++|.+..+ |..++++++
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 104 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLAN 104 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTT
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCccc
Confidence 56789999985555554343 889999999999887642 34 44458899999999999998855 778999999
Q ss_pred CceEecCCCCCcc-cCcc--ccCCCCCcEEecCCcccccc-hhh-hhccccCcEEEecCCCCCCCC-CccccC-------
Q 045321 190 LKHLKLNIPSLKC-LPSL--LCTILNLQTLEMPSSYVDHS-LED-IWMMQKLMHLNFGSITLPAPP-KNYSSS------- 256 (397)
Q Consensus 190 L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~l-p~~-~~~L~~L~~L~l~~~~~~~~~-p~~i~~------- 256 (397)
|++|++++|.+.. .|.. ++.+++|++|++++|.+..+ |.. ++++++|++|+++ ++....+ |..++.
T Consensus 105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLT-FNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECT-TCCBSCCCTTTSGGGTTCEEE
T ss_pred CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCC-CCcccccChhhhhcccccccc
Confidence 9999999999874 4444 88899999999999987776 544 7899999999998 7754433 333333
Q ss_pred ---------------------------CCCCcEEEcCCCeeeEEeccHHhhhcC--------------------------
Q 045321 257 ---------------------------LKNLIFISALNPNLSCYHSGVSNSLLG-------------------------- 283 (397)
Q Consensus 257 ---------------------------l~~L~~l~l~~~~L~i~~~~~~~~l~~-------------------------- 283 (397)
+++|+.+++++|.+ ....+..+..
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l---~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 260 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF---KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTN 260 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCC---CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCCcc---cccchhhhhccccccceeeEeeccccccccccchhh
Confidence 35677788877744 2223332211
Q ss_pred -------------CCCCcEEEeecC-------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCC
Q 045321 284 -------------LHKLECLKLVNE-------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDP 326 (397)
Q Consensus 284 -------------l~~L~~L~l~~~-------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~ 326 (397)
.++|+.|+++++ ++|+.|.+ ++.. +++|++|++++|.+....
T Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~ 339 (455)
T 3v47_A 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGSID 339 (455)
T ss_dssp SCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCEEC
T ss_pred hccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-cccCCEEECCCCccCCcC
Confidence 134555554442 34444444 3444 677777777777765555
Q ss_pred ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-CCcccccccccccccc
Q 045321 327 MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-AGAMPKLESLIVNPCA 395 (397)
Q Consensus 327 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~i~~C~ 395 (397)
+..++.+++|++|+|++|..... .+.. ...+++|+.|+++++ .+.+++.. ...+++|+.|+++++|
T Consensus 340 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 340 SRMFENLDKLEVLDLSYNHIRAL-GDQS-FLGLPNLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GGGGTTCTTCCEEECCSSCCCEE-CTTT-TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hhHhcCcccCCEEECCCCccccc-Chhh-ccccccccEEECCCC-ccccCCHhHhccCCcccEEEccCCC
Confidence 56677778888888866654221 1222 567788888888875 46666543 3567888888887654
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.90 E-value=5.9e-23 Score=192.63 Aligned_cols=258 Identities=16% Similarity=0.201 Sum_probs=198.4
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~ 192 (397)
..+++++.+..+.... .+. ..+++|++|.+.++... .++. +..+++|++|++++|.+..+| .++++++|++
T Consensus 43 l~~L~~L~l~~~~i~~-~~~~~~~~~L~~L~l~~n~i~-----~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~ 114 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQGIEYLTNLEYLNLNGNQIT-----DISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRE 114 (347)
T ss_dssp HTTCSEEECCSSCCCC-CTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSE
T ss_pred cccccEEEEeCCcccc-chhhhhcCCccEEEccCCccc-----cchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCE
Confidence 6678889888443333 445 78999999999998775 4444 499999999999999998875 6899999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeee
Q 045321 193 LKLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLS 271 (397)
Q Consensus 193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~ 271 (397)
|++++|.+..+|. +..+++|++|++++| .+..++. +..+++|++|+++ +|....++. ++.+++|+.+++++|.+
T Consensus 115 L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~-~~~~~~~~~-~~~l~~L~~L~l~~n~l- 189 (347)
T 4fmz_A 115 LYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVT-ESKVKDVTP-IANLTDLYSLSLNYNQI- 189 (347)
T ss_dssp EECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCSEEECTTSCC-
T ss_pred EECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEec-CCCcCCchh-hccCCCCCEEEccCCcc-
Confidence 9999999999877 899999999999999 5555554 8999999999999 888777665 88999999999999865
Q ss_pred EEeccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccc
Q 045321 272 CYHSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIME 331 (397)
Q Consensus 272 i~~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~ 331 (397)
..++. +..+++|+.|+++++ ++|+.|.+ .+.. +++|++|++++|.+.. ++.+.
T Consensus 190 ---~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~L~~L~l~~n~l~~--~~~~~ 262 (347)
T 4fmz_A 190 ---EDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLAN-LSQLTWLEIGTNQISD--INAVK 262 (347)
T ss_dssp ---CCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTT-CTTCCEEECCSSCCCC--CGGGT
T ss_pred ---ccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhc-CCCCCEEECCCCccCC--ChhHh
Confidence 33333 788999999998874 56777776 2344 7788888888887643 35677
Q ss_pred cCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 332 KLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 332 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
.+++|++|++++|...... . ...+++|+.|++++|+-....+...+.+|+|+.|++++|+
T Consensus 263 ~l~~L~~L~l~~n~l~~~~---~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 263 DLTKLKMLNVGSNQISDIS---V-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp TCTTCCEEECCSSCCCCCG---G-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred cCCCcCEEEccCCccCCCh---h-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 7888888888766554431 2 4667888888888875322222233467888888888775
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.90 E-value=5.8e-23 Score=201.13 Aligned_cols=269 Identities=17% Similarity=0.140 Sum_probs=191.8
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~ 189 (397)
+..++.|.+..+......+. ..+++|++|.+.++... .+ +..|.++++|++|++++|.++.+|. .++++++
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-----AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTT
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccC-----EeChhhhhCCccCCEEECCCCcCCccCcccccCCCC
Confidence 56788888885554444443 77889999999888765 33 4455888999999999999887775 4688899
Q ss_pred CceEecCCCCCccc-CccccCCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcC
Q 045321 190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISAL 266 (397)
Q Consensus 190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~ 266 (397)
|++|++++|.+..+ |..+..+++|++|++++|.+..++ ..++.+++|++|+++ ++....+|. .++.+++|+.++++
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLE-KCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEE-SCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECC-CCcCcccChhHhcccCCCcEEeCC
Confidence 99999999888765 567888999999999998777764 458888999999998 887776665 47888999999888
Q ss_pred CCeeeEEeccHHhhhcCCCCCcEEEeecCC-------------CeeEEEe-----------ccCCCCCCceEEEEecccC
Q 045321 267 NPNLSCYHSGVSNSLLGLHKLECLKLVNES-------------KLSRVVL-----------SKYQFPLSLSHLSLSNTEL 322 (397)
Q Consensus 267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~-------------~L~~L~l-----------~~~~~l~~L~~L~L~~~~l 322 (397)
+|.+ ....+..+..+++|+.|++++++ +|+.|.+ .+.. +++|++|++++|.+
T Consensus 185 ~n~i---~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l 260 (477)
T 2id5_A 185 HLNI---NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNPI 260 (477)
T ss_dssp SCCC---CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSCC
T ss_pred CCcC---cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCcC
Confidence 8765 33344567888889999988764 4555554 2334 66677777777766
Q ss_pred CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC-CCcccccccccccccc
Q 045321 323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG-AGAMPKLESLIVNPCA 395 (397)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~-~~~~p~L~~L~i~~C~ 395 (397)
.......+..+++|+.|+|++|...... +.. ...+++|+.|+++++ .+..++.. ...+++|+.|++.++|
T Consensus 261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~-~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 261 STIEGSMLHELLRLQEIQLVGGQLAVVE-PYA-FRGLNYLRVLNVSGN-QLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp CEECTTSCTTCTTCCEEECCSSCCSEEC-TTT-BTTCTTCCEEECCSS-CCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CccChhhccccccCCEEECCCCccceEC-HHH-hcCcccCCEEECCCC-cCceeCHhHcCCCcccCEEEccCCC
Confidence 5444455666777777777555443211 112 456777888888775 45555432 3467888888887654
No 9
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=192.53 Aligned_cols=244 Identities=13% Similarity=0.111 Sum_probs=202.0
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l 210 (397)
..+++++.+.+.++... .+ +.+|..+++|++|+++++.+..++ ..++++++|++|++++|.+..+|+ .++++
T Consensus 42 ~~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp GGGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred cccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 56799999999998765 55 566699999999999999999776 489999999999999999988754 57999
Q ss_pred CCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321 211 LNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE 288 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~ 288 (397)
++|++|++++|.+..+|.. ++++++|++|+++ ++....++ ..++.+++|+.+++++|.+ ... .+..+++|+
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l----~~~--~~~~l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRL----THV--DLSLIPSLF 189 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTSSCTTCCEEECCSSCC----SBC--CGGGCTTCS
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECC-CCccCccChhhccCCCCCCEEECCCCcC----Ccc--ccccccccc
Confidence 9999999999999999987 5899999999999 88776665 4589999999999999865 222 366789999
Q ss_pred EEEeecC--------CCeeEEEe--------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeE
Q 045321 289 CLKLVNE--------SKLSRVVL--------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLA 352 (397)
Q Consensus 289 ~L~l~~~--------~~L~~L~l--------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~ 352 (397)
.|+++++ ++|++|.+ .... +++|+.|++++|.+.. .+.++.+++|++|++++|...+. .+
T Consensus 190 ~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~-~~ 265 (390)
T 3o6n_A 190 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MY 265 (390)
T ss_dssp EEECCSSCCSEEECCSSCSEEECCSSCCCEEECCC-CSSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ES
T ss_pred eeecccccccccCCCCcceEEECCCCeeeeccccc-cccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCc-Ch
Confidence 9999874 46777776 1122 6789999999998754 46789999999999987765432 22
Q ss_pred EeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 353 CVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 353 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
.. ...+++|+.|+++++ .+..++.....+|+|+.|++++|+
T Consensus 266 ~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~n~ 306 (390)
T 3o6n_A 266 HP-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 306 (390)
T ss_dssp GG-GTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred hH-ccccccCCEEECCCC-cCcccCcccCCCCCCCEEECCCCc
Confidence 33 678999999999996 588888777889999999999884
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.89 E-value=3.1e-23 Score=208.64 Aligned_cols=259 Identities=18% Similarity=0.154 Sum_probs=134.3
Q ss_pred CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCC
Q 045321 115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILL 190 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L 190 (397)
.+++.+.+..+.....+.. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+|+ .++++++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 4455555552223332322 44566666666665543 22 2233566666666666666654443 34566666
Q ss_pred ceEecCCCCCcccCccc-cCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321 191 KHLKLNIPSLKCLPSLL-CTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~~~-~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~ 268 (397)
++|++++|.+..+|..+ +++++|++|++++|.+..+|+ .++.+++|++|+++ ++....++ ++.+++|+.+++++|
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~--~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-SNRLTHVD--LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECT-TSCCSBCC--GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECc-CCCCCCcC--hhhhhhhhhhhcccC
Confidence 66666666666665543 566666666666665555443 35666666666666 55444432 344555555555544
Q ss_pred eeeEEeccHHhhhcCCCCCcEEEeecC----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccc
Q 045321 269 NLSCYHSGVSNSLLGLHKLECLKLVNE----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPI 329 (397)
Q Consensus 269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~ 329 (397)
.+ ..+....+|+.|+++++ ++|+.|.+ ++.. +++|+.|++++|.+....+..
T Consensus 203 ~l--------~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~-l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 203 LL--------STLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLN-YPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp CC--------SEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCEEESGG
T ss_pred cc--------ccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhcc-CCCCCEEECCCCccCCCCHHH
Confidence 22 11223334455554442 23444443 3344 666666666666655444555
Q ss_pred cccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321 330 MEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC 394 (397)
Q Consensus 330 l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C 394 (397)
++.+++|+.|+|++|...+ ++.. ...+++|+.|+++++. +..++...+.+|+|+.|++++|
T Consensus 274 ~~~l~~L~~L~Ls~N~l~~--l~~~-~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N 334 (597)
T 3oja_B 274 FVKMQRLERLYISNNRLVA--LNLY-GQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHN 334 (597)
T ss_dssp GTTCSSCCEEECTTSCCCE--EECS-SSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSS
T ss_pred hcCccCCCEEECCCCCCCC--CCcc-cccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCC
Confidence 6666666666665554422 3333 4456666666666543 3444333334445555554443
No 11
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.89 E-value=3.4e-23 Score=214.31 Aligned_cols=151 Identities=13% Similarity=0.105 Sum_probs=108.4
Q ss_pred CCCeEEEEEEeCccch------------------hhcc-C--CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEc
Q 045321 114 LANVKRCFILEDLIEF------------------IFLE-Q--SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL 172 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l 172 (397)
..+++.|.+..+.... .+.. . .+++|+.|.+.++...+ .++..+.+++.|++|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence 5678888888554443 3333 5 78888888888876543 44444477788888888
Q ss_pred CCCC-cc--cccccccCCC-------CCceEecCCCCCcccCc--cccCCCCCcEEecCCcccccchhhhhccccCcEEE
Q 045321 173 GYAV-LD--QFPLGLENLI-------LLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLN 240 (397)
Q Consensus 173 ~~~~-i~--~lp~~~~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~ 240 (397)
++|. ++ .+|..++++. +|++|++++|.+..+|. .++++++|++|++++|.+..+| .++.+++|+.|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 8886 66 3676666554 77888888777777777 7777778888888777666777 677777777777
Q ss_pred ecCCCCCCCCCccccCCCC-CcEEEcCCCee
Q 045321 241 FGSITLPAPPKNYSSSLKN-LIFISALNPNL 270 (397)
Q Consensus 241 l~~~~~~~~~p~~i~~l~~-L~~l~l~~~~L 270 (397)
++ ++....+|..++.+++ |+.|++++|.+
T Consensus 602 Ls-~N~l~~lp~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 602 LD-YNQIEEIPEDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp CC-SSCCSCCCTTSCEECTTCCEEECCSSCC
T ss_pred Cc-CCccccchHHHhhccccCCEEECcCCCC
Confidence 77 7766677777777777 77777777754
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.1e-22 Score=205.04 Aligned_cols=124 Identities=15% Similarity=0.132 Sum_probs=63.9
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~ 189 (397)
+..++++.+..+.....+.. ..+++|++|.+.++... .+ +..|.++++|++|++++|.+..+ |..++++++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-----ccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 34555555553333333332 45566666666655443 22 33335555555555555555544 455555555
Q ss_pred CceEecCCCCCcccC-ccccCCCCCcEEecCCcccc--cchhhhhccccCcEEEec
Q 045321 190 LKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVD--HSLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 190 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~--~lp~~~~~L~~L~~L~l~ 242 (397)
|++|++++|.+..+| ..++++++|++|++++|.+. .+|..++++++|++|+++
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 555555555555444 34555555555555555443 245555555555555554
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.8e-23 Score=210.22 Aligned_cols=152 Identities=13% Similarity=0.114 Sum_probs=120.7
Q ss_pred CCCeEEEEEEeCccch-hhcc-CCCCCeeEEEEeCCC-CccccccchhHHhcCC------CeeEEEEcCCCCcccccc--
Q 045321 114 LANVKRCFILEDLIEF-IFLE-QSGMYLQSFLNHSSE-SDHLALIDCENFCEKF------KYLRLLNLGYAVLDQFPL-- 182 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~-~~~~-~~~~~Lr~L~~~~~~-~~~~~~~~l~~~~~~l------~~Lr~L~l~~~~i~~lp~-- 182 (397)
..+++++.+..+.... .+.. ..+++|++|.+.++. ..+ ..++.-+..+ +.|++|++++|.++.+|.
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~---~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~ 324 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISG---EQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCH---HHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCcc---ccchHHHHhhhccccCCCCCEEECCCCcCCccCchh
Confidence 5689999999555333 3334 889999999999997 531 0233333444 899999999999999998
Q ss_pred cccCCCCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccccchhhhhcccc-CcEEEecCCCCCCCCCccccCCC--
Q 045321 183 GLENLILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLK-- 258 (397)
Q Consensus 183 ~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~p~~i~~l~-- 258 (397)
.++++++|++|++++|.+. .+| .++.+++|++|++++|.+..+|..++.+++ |++|+++ ++....+|..++.++
T Consensus 325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls-~N~l~~lp~~~~~~~l~ 402 (636)
T 4eco_A 325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFA-HNKLKYIPNIFDAKSVS 402 (636)
T ss_dssp HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECC-SSCCSSCCSCCCTTCSS
T ss_pred hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEcc-CCcCcccchhhhhcccC
Confidence 8999999999999999988 898 888999999999999988889988999998 9999998 887778887776654
Q ss_pred CCcEEEcCCCee
Q 045321 259 NLIFISALNPNL 270 (397)
Q Consensus 259 ~L~~l~l~~~~L 270 (397)
+|+.+++++|.+
T Consensus 403 ~L~~L~Ls~N~l 414 (636)
T 4eco_A 403 VMSAIDFSYNEI 414 (636)
T ss_dssp CEEEEECCSSCT
T ss_pred ccCEEECcCCcC
Confidence 677777776644
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.89 E-value=2.6e-23 Score=210.52 Aligned_cols=171 Identities=12% Similarity=0.092 Sum_probs=142.6
Q ss_pred CCCeEEEEEEeCccch------------------hhcc-C--CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEc
Q 045321 114 LANVKRCFILEDLIEF------------------IFLE-Q--SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNL 172 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~------------------~~~~-~--~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l 172 (397)
..+++.|.+..+.... .+.. . .+++|++|.+.++...+ .++..+.+++.|++|++
T Consensus 205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L 280 (636)
T 4eco_A 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINV 280 (636)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEEC
T ss_pred ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEEC
Confidence 6789999999655444 4444 6 89999999999998653 55555599999999999
Q ss_pred CCCC-cc--cccccccCC------CCCceEecCCCCCcccCc--cccCCCCCcEEecCCcccc-cchhhhhccccCcEEE
Q 045321 173 GYAV-LD--QFPLGLENL------ILLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVD-HSLEDIWMMQKLMHLN 240 (397)
Q Consensus 173 ~~~~-i~--~lp~~~~~l------~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~~L~~L~ 240 (397)
++|. ++ .+|..++++ ++|++|++++|.+..+|. .++++++|++|++++|.+. .+| .++.+++|++|+
T Consensus 281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~ 359 (636)
T 4eco_A 281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLN 359 (636)
T ss_dssp TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEE
T ss_pred cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEE
Confidence 9998 88 489888887 999999999999999999 9999999999999999888 899 899999999999
Q ss_pred ecCCCCCCCCCccccCCCC-CcEEEcCCCeeeEEeccHHhhhcCCC--CCcEEEeec
Q 045321 241 FGSITLPAPPKNYSSSLKN-LIFISALNPNLSCYHSGVSNSLLGLH--KLECLKLVN 294 (397)
Q Consensus 241 l~~~~~~~~~p~~i~~l~~-L~~l~l~~~~L~i~~~~~~~~l~~l~--~L~~L~l~~ 294 (397)
++ ++....+|..++.+++ |+.+++++|.+ ..+|..+..++ +|+.|++++
T Consensus 360 L~-~N~l~~lp~~l~~l~~~L~~L~Ls~N~l----~~lp~~~~~~~l~~L~~L~Ls~ 411 (636)
T 4eco_A 360 LA-YNQITEIPANFCGFTEQVENLSFAHNKL----KYIPNIFDAKSVSVMSAIDFSY 411 (636)
T ss_dssp CC-SSEEEECCTTSEEECTTCCEEECCSSCC----SSCCSCCCTTCSSCEEEEECCS
T ss_pred CC-CCccccccHhhhhhcccCcEEEccCCcC----cccchhhhhcccCccCEEECcC
Confidence 99 8887799999999999 99999999865 24455444433 555555554
No 15
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.89 E-value=9.8e-23 Score=210.74 Aligned_cols=249 Identities=18% Similarity=0.131 Sum_probs=183.6
Q ss_pred CCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL 213 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L 213 (397)
+++|+.|.+.++...+ .++..+..++.|++|++++|.+. .+|..++++++|++|++++|.+. .+|..++.+++|
T Consensus 393 ~~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTG----KIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEE----ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred cCCccEEECCCCcccc----ccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCc
Confidence 5667777777776542 33444488888888888888877 67888888888888888888876 788888888888
Q ss_pred cEEecCCcccc-cchhhhhccccCcEEEecCCCCCC-CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321 214 QTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSITLPA-PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLK 291 (397)
Q Consensus 214 ~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~~~~-~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~ 291 (397)
++|++++|.+. .+|..++++++|++|+++ +|... .+|..++.+++|+.+++++|.+ ...+|..++.+++|+.|+
T Consensus 469 ~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~-~N~l~~~~p~~~~~l~~L~~L~L~~N~l---~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLS-NNRLTGEIPKWIGRLENLAILKLSNNSF---SGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSSCCCSCCCGGGGGCTTCCEEECC-SSCCCSCCCGGGGGCTTCCEEECCSSCC---EEECCGGGGGCTTCCEEE
T ss_pred eEEEecCCcccCcCCHHHhcCCCCCEEEcc-CCccCCcCChHHhcCCCCCEEECCCCcc---cCcCCHHHcCCCCCCEEE
Confidence 88888888655 678888888888888888 77654 6788888888888888888876 466778888888888888
Q ss_pred eecCCC-------------eeE-----------------------------------------------------EEe--
Q 045321 292 LVNESK-------------LSR-----------------------------------------------------VVL-- 303 (397)
Q Consensus 292 l~~~~~-------------L~~-----------------------------------------------------L~l-- 303 (397)
+++++- +.. +.-
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 876410 000 000
Q ss_pred --ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCC
Q 045321 304 --SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAG 381 (397)
Q Consensus 304 --~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 381 (397)
.++. +++|+.|++++|.+....+..++.+++|+.|+|++|...+.. +.. .+.+++|+.|+++++.--..+|...+
T Consensus 625 ~~~~~~-l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~i-p~~-l~~L~~L~~LdLs~N~l~g~ip~~l~ 701 (768)
T 3rgz_A 625 SPTFDN-NGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSI-PDE-VGDLRGLNILDLSSNKLDGRIPQAMS 701 (768)
T ss_dssp CCSCSS-SBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCC-CGG-GGGCTTCCEEECCSSCCEECCCGGGG
T ss_pred chhhhc-cccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCC-ChH-HhCCCCCCEEECCCCcccCcCChHHh
Confidence 1233 567888888888877677777888888888888777765543 333 56778888888887654345566666
Q ss_pred cccccccccccccc
Q 045321 382 AMPKLESLIVNPCA 395 (397)
Q Consensus 382 ~~p~L~~L~i~~C~ 395 (397)
.+++|+.|++++|+
T Consensus 702 ~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 702 ALTMLTEIDLSNNN 715 (768)
T ss_dssp GCCCCSEEECCSSE
T ss_pred CCCCCCEEECcCCc
Confidence 77778888777663
No 16
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=2.9e-22 Score=201.92 Aligned_cols=135 Identities=17% Similarity=0.129 Sum_probs=67.6
Q ss_pred hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC--------------
Q 045321 230 IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-------------- 295 (397)
Q Consensus 230 ~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-------------- 295 (397)
++.+++|++|+++ ++....+|.+++.+++|+.+++++|.+ ....+..+..+++|+.|+++++
T Consensus 274 ~~~l~~L~~L~l~-~n~l~~lp~~l~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 274 FHCFSGLQELDLT-ATHLSELPSGLVGLSTLKKLVLSANKF---ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTCTTCSEEECT-TSCCSCCCSSCCSCTTCCEEECTTCCC---SBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred hccccCCCEEecc-CCccCCCChhhcccccCCEEECccCCc---CcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 3445556666666 555556666666666666666666644 2333445555566666655542
Q ss_pred CCeeEEEe-------------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCC
Q 045321 296 SKLSRVVL-------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKL 362 (397)
Q Consensus 296 ~~L~~L~l-------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L 362 (397)
++|+.|.+ .+.. +++|++|++++|.+....+..++.+++|++|++++|...+...... ...+++|
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L 427 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRN-LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP-FQNLHLL 427 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTT-CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCT-TTTCTTC
T ss_pred CcCCEEECCCCccccccCcchhccc-CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchh-hhCcccC
Confidence 23444443 1223 5555555555555433334445555555555554444332211111 2334444
Q ss_pred CEEEEecC
Q 045321 363 TVLHLKSM 370 (397)
Q Consensus 363 ~~L~l~~~ 370 (397)
+.|+++++
T Consensus 428 ~~L~l~~n 435 (606)
T 3t6q_A 428 KVLNLSHS 435 (606)
T ss_dssp CEEECTTC
T ss_pred CEEECCCC
Confidence 44444443
No 17
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.88 E-value=2.5e-23 Score=192.42 Aligned_cols=245 Identities=13% Similarity=0.073 Sum_probs=202.1
Q ss_pred CCeEEEEEEeCccch---hhcc-CCCCCeeEEEEeC-CCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCC
Q 045321 115 ANVKRCFILEDLIEF---IFLE-QSGMYLQSFLNHS-SESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLI 188 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~---~~~~-~~~~~Lr~L~~~~-~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~ 188 (397)
.+++++.+..+.... .+.. ..+++|++|.+.+ +.... .++..|..+++|++|++++|.+. .+|..+++++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 125 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVG----PIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEES----CCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccc----cCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCC
Confidence 689999999555443 3344 8899999999995 65542 44444599999999999999998 8899999999
Q ss_pred CCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhhhhccc-cCcEEEecCCCCCC-CCCccccCCCCCcEEE
Q 045321 189 LLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLEDIWMMQ-KLMHLNFGSITLPA-PPKNYSSSLKNLIFIS 264 (397)
Q Consensus 189 ~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~~~~L~-~L~~L~l~~~~~~~-~~p~~i~~l~~L~~l~ 264 (397)
+|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..++.++ +|++|+++ ++... .+|..++.++ |+.++
T Consensus 126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~-~N~l~~~~~~~~~~l~-L~~L~ 203 (313)
T 1ogq_A 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS-RNRLTGKIPPTFANLN-LAFVD 203 (313)
T ss_dssp TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC-SSEEEEECCGGGGGCC-CSEEE
T ss_pred CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc-CCeeeccCChHHhCCc-ccEEE
Confidence 9999999999988 79999999999999999999877 8899999998 99999999 87654 6788899997 99999
Q ss_pred cCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecc
Q 045321 265 ALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN 344 (397)
Q Consensus 265 l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 344 (397)
+++|.+ ....+..+..+++|+.|+++++ .+....-.+.. +++|++|++++|.+....+..++.+++|++|++++|
T Consensus 204 Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 278 (313)
T 1ogq_A 204 LSRNML---EGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGL-SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278 (313)
T ss_dssp CCSSEE---EECCGGGCCTTSCCSEEECCSS-EECCBGGGCCC-CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS
T ss_pred CcCCcc---cCcCCHHHhcCCCCCEEECCCC-ceeeecCcccc-cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC
Confidence 999977 5667888999999999999984 22211113445 899999999999987677888999999999999888
Q ss_pred cccCceeEEeCCCCCCCCCEEEEecCCCc
Q 045321 345 SYLGRKLACVGSSSFPKLTVLHLKSMYWQ 373 (397)
Q Consensus 345 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 373 (397)
.+.+.. + . ...+++|+.|++.+++.+
T Consensus 279 ~l~~~i-p-~-~~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 279 NLCGEI-P-Q-GGNLQRFDVSAYANNKCL 304 (313)
T ss_dssp EEEEEC-C-C-STTGGGSCGGGTCSSSEE
T ss_pred cccccC-C-C-CccccccChHHhcCCCCc
Confidence 765432 2 2 367899999999987644
No 18
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.88 E-value=1.9e-22 Score=208.53 Aligned_cols=274 Identities=18% Similarity=0.135 Sum_probs=143.0
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc--------------
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-------------- 178 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-------------- 178 (397)
..+++++.+..+.....++. ..+++|++|.+.++...+ .++..+..+++|++|++++|.+.
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 34455555553332222333 455555555555555432 22333355555555555554433
Q ss_pred ---------cccccccCC-CCCceEecCCCCCc-ccCccccCCCCCcEEecCCcccc-cchhh-hhccccCcEEEecCCC
Q 045321 179 ---------QFPLGLENL-ILLKHLKLNIPSLK-CLPSLLCTILNLQTLEMPSSYVD-HSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 179 ---------~lp~~~~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~l~-~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
.+|..++.. ++|++|++++|.+. .+|..++++++|++|++++|.+. .+|.. ++++++|++|+++ +|
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls-~n 353 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLS-FN 353 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECC-SS
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCc-CC
Confidence 344444443 55555555555554 45555666666666666666443 55544 5666666666665 55
Q ss_pred CCC-CCCccccCCC-CCcEEEcCCCeeeEE-----------------------eccHHhhhcCCCCCcEEEeecC-----
Q 045321 246 LPA-PPKNYSSSLK-NLIFISALNPNLSCY-----------------------HSGVSNSLLGLHKLECLKLVNE----- 295 (397)
Q Consensus 246 ~~~-~~p~~i~~l~-~L~~l~l~~~~L~i~-----------------------~~~~~~~l~~l~~L~~L~l~~~----- 295 (397)
... .+|..+++++ +|+.+++++|.+.-. ...++..++.+++|+.|+++++
T Consensus 354 ~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ 433 (768)
T 3rgz_A 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433 (768)
T ss_dssp EEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESC
T ss_pred ccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCc
Confidence 432 4444444443 444444444322100 2344555666666666666553
Q ss_pred --------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCC
Q 045321 296 --------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGS 356 (397)
Q Consensus 296 --------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~ 356 (397)
++|+.|.+ .+.. +++|++|++++|.+....+..++.+++|++|+|++|...+. ++.. .
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~-~p~~-~ 510 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMY-VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE-IPKW-I 510 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSC-CCGG-G
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcC-CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCc-CChH-H
Confidence 34555554 1223 55666666666666555555666666666666655554333 2222 4
Q ss_pred CCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 357 SSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 357 ~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+.+++|+.|++++|.-...+|...+.+++|+.|++++|+
T Consensus 511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 556677777777665333455555566777777776653
No 19
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.88 E-value=9.4e-22 Score=198.21 Aligned_cols=226 Identities=18% Similarity=0.154 Sum_probs=166.7
Q ss_pred eeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecC
Q 045321 166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGS 243 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~ 243 (397)
.|++|+++++.+..++. .++++++|++|++++|.+.++|..++.+++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~- 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK- 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC-
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC-
Confidence 56666666666665543 37788899999999999989998899999999999999977776 4468889999999998
Q ss_pred CCCCC-CCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC-------------CCeeEEEe-----
Q 045321 244 ITLPA-PPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE-------------SKLSRVVL----- 303 (397)
Q Consensus 244 ~~~~~-~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~-------------~~L~~L~l----- 303 (397)
++... .+|.. ++.+++|+.+++++|.+.- ....+..+..+++|+.|+++++ ++|+.|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCE-EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCcccc-ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 77533 55544 7888899999888875521 1112566778888888888764 46777766
Q ss_pred -------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEE-eCCCCCCCCCEEEEecCCCcCc
Q 045321 304 -------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLAC-VGSSSFPKLTVLHLKSMYWQDE 375 (397)
Q Consensus 304 -------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~l~~ 375 (397)
++.. +++|+.|++++|.+....+..++.+++|++|++++|.+.+..++. .....+++|+.|++++|. +..
T Consensus 413 ~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~ 490 (606)
T 3t6q_A 413 KVKDAQSPFQN-LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD-LSS 490 (606)
T ss_dssp ECCTTCCTTTT-CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC-CCE
T ss_pred CCcccchhhhC-cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc-cCc
Confidence 2445 788999999999876666777888999999999777765543321 115678888999988874 555
Q ss_pred E-EECCCcccccccccccccc
Q 045321 376 W-TMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 376 ~-~~~~~~~p~L~~L~i~~C~ 395 (397)
+ +...+.+++|+.|++++|.
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~ 511 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNR 511 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSC
T ss_pred cChhhhccccCCCEEECCCCc
Confidence 5 3445677888888888763
No 20
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.1e-22 Score=207.18 Aligned_cols=271 Identities=14% Similarity=0.080 Sum_probs=178.0
Q ss_pred CCCeEEEEEEeCccc-hhhcc-CCCCCeeEEEEeCCC-CccccccchhHH-------hcCCCeeEEEEcCCCCcccccc-
Q 045321 114 LANVKRCFILEDLIE-FIFLE-QSGMYLQSFLNHSSE-SDHLALIDCENF-------CEKFKYLRLLNLGYAVLDQFPL- 182 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~-~~~~~-~~~~~Lr~L~~~~~~-~~~~~~~~l~~~-------~~~l~~Lr~L~l~~~~i~~lp~- 182 (397)
..+++.|.+..+... ..+.. ..+++|+.|.+.++. ..+ ..++.- +..+++|++|++++|.+..+|.
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg---~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~ 566 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---AQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCH---HHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCccc---ccchHHHHhhhhcccccCCccEEEeeCCcCCccCCh
Confidence 578999999955433 33434 889999999999997 531 012222 2455599999999999999998
Q ss_pred -cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhcccc-CcEEEecCCCCCCCCCccccCCCC-
Q 045321 183 -GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK-LMHLNFGSITLPAPPKNYSSSLKN- 259 (397)
Q Consensus 183 -~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~-L~~L~l~~~~~~~~~p~~i~~l~~- 259 (397)
.++++++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+..+++ |+.|+++ +|....+|..++.++.
T Consensus 567 ~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls-~N~L~~lp~~~~~~~~~ 644 (876)
T 4ecn_A 567 ASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS-HNKLKYIPNIFNAKSVY 644 (876)
T ss_dssp HHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECC-SSCCCSCCSCCCTTCSS
T ss_pred hhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECc-CCCCCcCchhhhccccC
Confidence 8999999999999999999998 899999999999999988899998999998 9999999 8877788877766543
Q ss_pred -CcEEEcCCCeee-----------------EE--------eccHHhhh-cCCCCCcEEEeecCC----------------
Q 045321 260 -LIFISALNPNLS-----------------CY--------HSGVSNSL-LGLHKLECLKLVNES---------------- 296 (397)
Q Consensus 260 -L~~l~l~~~~L~-----------------i~--------~~~~~~~l-~~l~~L~~L~l~~~~---------------- 296 (397)
|+.+++++|.+. +. ...++..+ ..+++|+.|+++++.
T Consensus 645 ~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l 724 (876)
T 4ecn_A 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724 (876)
T ss_dssp CEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCC
T ss_pred CCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccc
Confidence 777777665330 00 11233333 355666666666530
Q ss_pred ----CeeEEEe----------ccC--CCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc-----ccCceeEEeC
Q 045321 297 ----KLSRVVL----------SKY--QFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS-----YLGRKLACVG 355 (397)
Q Consensus 297 ----~L~~L~l----------~~~--~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~-----~~~~~~~~~~ 355 (397)
+|+.|.+ .+. . +++|+.|+|++|.+.. .+..++.+++|+.|+|++|. .....++..
T Consensus 725 ~nl~~L~~L~Ls~N~L~~lp~~l~~~~-l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~- 801 (876)
T 4ecn_A 725 KNTYLLTTIDLRFNKLTSLSDDFRATT-LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTG- 801 (876)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGSTTT-CTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTT-
T ss_pred cccCCccEEECCCCCCccchHHhhhcc-CCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHH-
Confidence 4444544 122 3 5556666666655533 34445555666666664321 101112222
Q ss_pred CCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 356 SSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 356 ~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
...+++|+.|++++|. +..+|.. .+++|+.|++++|+
T Consensus 802 l~~L~~L~~L~Ls~N~-L~~Ip~~--l~~~L~~LdLs~N~ 838 (876)
T 4ecn_A 802 ITTCPSLIQLQIGSND-IRKVDEK--LTPQLYILDIADNP 838 (876)
T ss_dssp GGGCSSCCEEECCSSC-CCBCCSC--CCSSSCEEECCSCT
T ss_pred HhcCCCCCEEECCCCC-CCccCHh--hcCCCCEEECCCCC
Confidence 3456666666666653 3555433 23567777776665
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=1e-21 Score=197.46 Aligned_cols=245 Identities=13% Similarity=0.114 Sum_probs=202.6
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l 210 (397)
..+++++.+.+.++... .+ +.+|..+++|++|++++|.+..+| ..++.+++|++|++++|.+..+|+. ++++
T Consensus 48 l~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 122 (597)
T 3oja_B 48 ITLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 122 (597)
T ss_dssp GGGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC
Confidence 56789999999988765 55 666799999999999999999765 4899999999999999999987754 6999
Q ss_pred CCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321 211 LNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE 288 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~ 288 (397)
++|++|++++|.+..+|.. ++.+++|++|+++ +|....+++ .++.+++|+.|++++|.+ ..+ .++.+++|+
T Consensus 123 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~--~~~~l~~L~ 195 (597)
T 3oja_B 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMS-NNNLERIEDDTFQATTSLQNLQLSSNRL----THV--DLSLIPSLF 195 (597)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCBCCTTTTTTCTTCCEEECTTSCC----SBC--CGGGCTTCS
T ss_pred CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEee-CCcCCCCChhhhhcCCcCcEEECcCCCC----CCc--Chhhhhhhh
Confidence 9999999999999999987 5899999999999 887666654 699999999999999866 222 356789999
Q ss_pred EEEeecC--------CCeeEEEec-------cCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEE
Q 045321 289 CLKLVNE--------SKLSRVVLS-------KYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLAC 353 (397)
Q Consensus 289 ~L~l~~~--------~~L~~L~l~-------~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~ 353 (397)
.|+++++ ++|+.|.+. .+..+++|+.|++++|.+.. ++.++.+++|+.|+|++|.+.+. .+.
T Consensus 196 ~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~-~~~ 272 (597)
T 3oja_B 196 HANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI-MYH 272 (597)
T ss_dssp EEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE-ESG
T ss_pred hhhcccCccccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC-CHH
Confidence 9999874 467777761 11126789999999998743 47799999999999987766433 233
Q ss_pred eCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 354 VGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 354 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
. ...+++|+.|+++++ .+..++...+.+|+|+.|++++|+
T Consensus 273 ~-~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~Ls~N~ 312 (597)
T 3oja_B 273 P-FVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDLSHNH 312 (597)
T ss_dssp G-GTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEECCSSC
T ss_pred H-hcCccCCCEEECCCC-CCCCCCcccccCCCCcEEECCCCC
Confidence 3 678999999999986 588888888889999999999875
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.87 E-value=9.9e-22 Score=196.47 Aligned_cols=114 Identities=23% Similarity=0.236 Sum_probs=64.7
Q ss_pred HhhhcCCCCCcEEEeecC------------CCeeEEEe------------ccCCCCCCceEEEEecccCCCCCccccccC
Q 045321 278 SNSLLGLHKLECLKLVNE------------SKLSRVVL------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKL 333 (397)
Q Consensus 278 ~~~l~~l~~L~~L~l~~~------------~~L~~L~l------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 333 (397)
+..+..+++|+.|+++++ ++|+.|.+ .+.. +++|++|++++|.+....+..++.+
T Consensus 366 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l 444 (570)
T 2z63_A 366 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS-LRNLIYLDISHTHTRVAFNGIFNGL 444 (570)
T ss_dssp EHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTT-CTTCCEEECTTSCCEECCTTTTTTC
T ss_pred cccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhc-CCCCCEEeCcCCcccccchhhhhcC
Confidence 345556666666666653 45555554 1233 6677777777776655555566677
Q ss_pred cCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcE-EECCCccccccccccccc
Q 045321 334 PRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEW-TMGAGAMPKLESLIVNPC 394 (397)
Q Consensus 334 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~i~~C 394 (397)
++|++|++++|......++.. ...+++|+.|++++|. +..+ +.....+++|+.|++++|
T Consensus 445 ~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 445 SSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp TTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred CcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCC
Confidence 777777776655543333433 5566666666666653 3333 223344555555555544
No 23
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=205.09 Aligned_cols=149 Identities=17% Similarity=0.159 Sum_probs=113.2
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~ 189 (397)
+..+++|.+..+......+. ..+++|++|.+.++.... .+ +..|.++++|++|++++|.+..+ |..++++.+
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~ 98 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFH 98 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSS
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcc
Confidence 67899999996555554444 889999999999985432 45 55559999999999999998855 788999999
Q ss_pred CceEecCCCCCcc-cCcc--ccCCCCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCCC-CCccccCC--CCCc
Q 045321 190 LKHLKLNIPSLKC-LPSL--LCTILNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAP-PKNYSSSL--KNLI 261 (397)
Q Consensus 190 L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l--~~L~ 261 (397)
|++|++++|.+.. +|.. ++++++|++|++++|.+..++ ..++++++|++|+++ ++.... .|..++.+ ++|+
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls-~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFS-SNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEE-SSCCCCCCSGGGHHHHHCSSC
T ss_pred cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECC-CCcCCeeCHHHcccccCCccc
Confidence 9999999999875 5655 889999999999999776653 568999999999998 765432 33344433 3444
Q ss_pred EEEcCC
Q 045321 262 FISALN 267 (397)
Q Consensus 262 ~l~l~~ 267 (397)
.+++++
T Consensus 178 ~L~L~~ 183 (844)
T 3j0a_A 178 FFSLAA 183 (844)
T ss_dssp CCEECC
T ss_pred eEECCC
Confidence 444433
No 24
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.87 E-value=1.7e-21 Score=181.48 Aligned_cols=264 Identities=14% Similarity=0.064 Sum_probs=169.9
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL 190 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L 190 (397)
...++.+.+..+........ ..+++|++|.+.++... .+ +..|..+++|++|++++|.++.+|..+. ++|
T Consensus 51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-----KISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTL 123 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTC
T ss_pred CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-----eeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccc
Confidence 44566777664444443332 66777777777776654 23 4444777777777777777777766554 577
Q ss_pred ceEecCCCCCcccCc-cccCCCCCcEEecCCcccc---cchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321 191 KHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVD---HSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~ 266 (397)
++|++++|.+..+|. .+.++++|++|++++|.+. ..|..+..+++|++|+++ ++....+|..+. ++|+.++++
T Consensus 124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~ 200 (330)
T 1xku_A 124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA-DTNITTIPQGLP--PSLTELHLD 200 (330)
T ss_dssp CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC-SSCCCSCCSSCC--TTCSEEECT
T ss_pred cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC-CCccccCCcccc--ccCCEEECC
Confidence 777777777766654 3667777777777777544 345557777777777777 776666766554 677778887
Q ss_pred CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
+|.+ ....+..+..+++|+.|+++++ .++.+.. ++.. +++|++|++++|.+. ..+..+..+++|++|++++|.
T Consensus 201 ~n~l---~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 201 GNKI---TKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp TSCC---CEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred CCcC---CccCHHHhcCCCCCCEEECCCC-cCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 7765 3444567778888888888773 4555432 4555 788999999998874 455667888899999997776
Q ss_pred ccCceeEEe----CCCCCCCCCEEEEecCCCcCcEEEC---CCccccccccccccc
Q 045321 346 YLGRKLACV----GSSSFPKLTVLHLKSMYWQDEWTMG---AGAMPKLESLIVNPC 394 (397)
Q Consensus 346 ~~~~~~~~~----~~~~~~~L~~L~l~~~~~l~~~~~~---~~~~p~L~~L~i~~C 394 (397)
+........ .....+.|+.|++.+++ +..+... ...+++++.++++++
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCGGGGTTCCCGGGEEC---
T ss_pred CCccChhhcCCcccccccccccceEeecCc-ccccccCccccccccceeEEEeccc
Confidence 544321100 01134778888888866 4433222 234566777777654
No 25
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=3e-21 Score=188.42 Aligned_cols=103 Identities=17% Similarity=0.059 Sum_probs=52.1
Q ss_pred CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321 115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL 193 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L 193 (397)
..++.+.+..+.. ...+. ..+++|++|.+.++... .++. +..+++|++|++++|.+..++. ++++++|++|
T Consensus 46 ~~l~~L~l~~~~i-~~l~~~~~l~~L~~L~Ls~n~l~-----~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGI-KSIDGVEYLNNLTQINFSNNQLT-----DITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCC-CCCTTGGGCTTCCEEECCSSCCC-----CCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCC-ccCcchhhhcCCCEEECCCCccC-----Cchh-hhccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 3455555542222 22223 44555666666555543 2222 2555555555555555555444 5555555555
Q ss_pred ecCCCCCcccCccccCCCCCcEEecCCcccccc
Q 045321 194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS 226 (397)
Q Consensus 194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l 226 (397)
++++|.+..+|. ++++++|++|++++|.+..+
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~ 149 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDI 149 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCC
Confidence 555555555543 55555555555555544443
No 26
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.87 E-value=5.3e-21 Score=185.80 Aligned_cols=205 Identities=14% Similarity=0.103 Sum_probs=150.5
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~ 192 (397)
..+++++.+..+.... .+. ..+++|++|.+.++.... ++ + ..+++|++|++++|.++.+| ++++++|++
T Consensus 41 l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNSSITD-MTGIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSSCCCC-CTTGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCE
T ss_pred cCCCCEEEccCCCccc-ChhhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCE
Confidence 5678888888444444 335 778899999999887763 22 3 88889999999999988775 888999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCeee
Q 045321 193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPNLS 271 (397)
Q Consensus 193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~L~ 271 (397)
|++++|.++.+| ++.+++|++|++++|.+..+| ++.+++|++|+++ +|. ...+ .++.+++|+.+++++|.+
T Consensus 111 L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~-~n~~~~~~--~~~~l~~L~~L~ls~n~l- 182 (457)
T 3bz5_A 111 LNCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCH-LNKKITKL--DVTPQTQLTTLDCSFNKI- 182 (457)
T ss_dssp EECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECT-TCSCCCCC--CCTTCTTCCEEECCSSCC-
T ss_pred EECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECC-CCCccccc--ccccCCcCCEEECCCCcc-
Confidence 999999988886 888999999999999887775 7888999999998 773 4444 578889999999998865
Q ss_pred EEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 272 CYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 272 i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
..++ +..+++|+.|+++++ .++.+ .++. +++|++|++++|.+.. ++ ++.+++|+.|++++|.+.+
T Consensus 183 ---~~l~--l~~l~~L~~L~l~~N-~l~~~--~l~~-l~~L~~L~Ls~N~l~~--ip-~~~l~~L~~L~l~~N~l~~ 247 (457)
T 3bz5_A 183 ---TELD--VSQNKLLNRLNCDTN-NITKL--DLNQ-NIQLTFLDCSSNKLTE--ID-VTPLTQLTYFDCSVNPLTE 247 (457)
T ss_dssp ---CCCC--CTTCTTCCEEECCSS-CCSCC--CCTT-CTTCSEEECCSSCCSC--CC-CTTCTTCSEEECCSSCCSC
T ss_pred ---ceec--cccCCCCCEEECcCC-cCCee--cccc-CCCCCEEECcCCcccc--cC-ccccCCCCEEEeeCCcCCC
Confidence 3333 777888888888773 33333 2444 6666666666666543 22 5566666666665555443
No 27
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.87 E-value=4.6e-22 Score=185.53 Aligned_cols=265 Identities=14% Similarity=0.066 Sum_probs=163.4
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL 190 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L 190 (397)
...++.+.+..+......+. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+|..+. .+|
T Consensus 53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-----KIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSL 125 (332)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-----EECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTC
T ss_pred CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-----ccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccC
Confidence 34566666663333333332 56666666666666554 23 3334666667777776666666665554 566
Q ss_pred ceEecCCCCCcccCcc-ccCCCCCcEEecCCcccc---cchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321 191 KHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVD---HSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~---~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~ 266 (397)
++|++++|.+..+|.. ++.+++|++|++++|.+. ..|..+..+ +|++|+++ ++....+|..+. ++|+.++++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~-~n~l~~l~~~~~--~~L~~L~l~ 201 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS-EAKLTGIPKDLP--ETLNELHLD 201 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC-SSBCSSCCSSSC--SSCSCCBCC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc-CCCCCccCcccc--CCCCEEECC
Confidence 6777766666666543 566667777777666443 234445555 66677766 666666665544 567777777
Q ss_pred CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
+|.+ ....+..+..+++|+.|+++++ .++.+.. ++.. +++|++|++++|.+. ..+..++.+++|++|++++|.
T Consensus 202 ~n~i---~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 202 HNKI---QAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSF-LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp SSCC---CCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGG-CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSC
T ss_pred CCcC---CccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhC-CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCC
Confidence 7755 3344466778888888888773 3443322 4555 889999999999875 455668899999999998776
Q ss_pred ccCceeEEe-C---CCCCCCCCEEEEecCCCcCcE---EECCCccccccccccccccC
Q 045321 346 YLGRKLACV-G---SSSFPKLTVLHLKSMYWQDEW---TMGAGAMPKLESLIVNPCAY 396 (397)
Q Consensus 346 ~~~~~~~~~-~---~~~~~~L~~L~l~~~~~l~~~---~~~~~~~p~L~~L~i~~C~~ 396 (397)
+........ + ...+++|+.|++.+++ +..+ +.....+++|+.+++.++.+
T Consensus 276 l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 276 ITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhcccccC
Confidence 643321111 0 1125789999999876 3322 22344678888888888764
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=6.2e-22 Score=193.78 Aligned_cols=248 Identities=15% Similarity=0.069 Sum_probs=175.1
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~ 189 (397)
..+++.|.+..+......+. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+ |..+.++++
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 129 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-----LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYN 129 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-----SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-----ccCcccccCCCCCCEEECCCCccccCChhHcccccc
Confidence 56788888874444444333 77888999988888765 44 44557888888888888888744 567788888
Q ss_pred CceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcC
Q 045321 190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISAL 266 (397)
Q Consensus 190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~ 266 (397)
|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|+.|+++ ++....++. .++.+++|+.++++
T Consensus 130 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~-~n~i~~~~~~~~~~l~~L~~L~l~ 208 (477)
T 2id5_A 130 LKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAIRDYSFKRLYRLKVLEIS 208 (477)
T ss_dssp CCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE-SCCCCEECTTCSCSCTTCCEEEEE
T ss_pred CCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC-CCcCcEeChhhcccCcccceeeCC
Confidence 88888888887755 45678888888888888877777654 7788888888888 766554443 56677777777776
Q ss_pred CCee-----------------eEE----eccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCC
Q 045321 267 NPNL-----------------SCY----HSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 267 ~~~L-----------------~i~----~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~ 324 (397)
+|.. .+. .......+..+++|+.|+++++ .++.+.. .+.. +++|+.|++++|.+..
T Consensus 209 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~ 286 (477)
T 2id5_A 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHE-LLRLQEIQLVGGQLAV 286 (477)
T ss_dssp CCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTT-CTTCCEEECCSSCCSE
T ss_pred CCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCC-cCCccChhhccc-cccCCEEECCCCccce
Confidence 5421 111 1111234555556666666552 2333322 3556 8999999999999877
Q ss_pred CCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 325 DPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 325 ~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
..+..+..+++|+.|+|++|.+.... ......+++|+.|++.+++
T Consensus 287 ~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 287 VEPYAFRGLNYLRVLNVSGNQLTTLE--ESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp ECTTTBTTCTTCCEEECCSSCCSCCC--GGGBSCGGGCCEEECCSSC
T ss_pred ECHHHhcCcccCCEEECCCCcCceeC--HhHcCCCcccCEEEccCCC
Confidence 67778999999999999887665432 2214678999999999865
No 29
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=1.1e-21 Score=193.98 Aligned_cols=265 Identities=15% Similarity=0.131 Sum_probs=170.7
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL 190 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L 190 (397)
..+++++.+..+.....++. ..+++|++|.+.++... .+ +..|..+++|++|++++|.++.+|.. .+.+|
T Consensus 20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 92 (520)
T 2z7x_B 20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNL 92 (520)
T ss_dssp CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCC
T ss_pred cccccEEECCCCcccccChhhccccccccEEecCCCccC-----CcChHHhhcccCCCEEecCCCceeecCcc--ccCCc
Confidence 46788888885554444433 77888999988888775 34 55558888899999999888888776 78889
Q ss_pred ceEecCCCCCcc--cCccccCCCCCcEEecCCcccccchhhhhccccC--cEEEecCCCCC---CCCCccccC-------
Q 045321 191 KHLKLNIPSLKC--LPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL--MHLNFGSITLP---APPKNYSSS------- 256 (397)
Q Consensus 191 ~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L--~~L~l~~~~~~---~~~p~~i~~------- 256 (397)
++|++++|.+.. +|..++++++|++|++++|.+.. ..++.+++| ++|+++ ++.. ...|..++.
T Consensus 93 ~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~-~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLV-LGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp SEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEE-ECTTTTSSCCTTTTTTCCEEEEE
T ss_pred cEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEee-cccccccccccccccccccceEE
Confidence 999998888875 56788888899999988886655 346677777 888887 6543 233333333
Q ss_pred -------------------CCCCcEEEcC---------------------------------------------------
Q 045321 257 -------------------LKNLIFISAL--------------------------------------------------- 266 (397)
Q Consensus 257 -------------------l~~L~~l~l~--------------------------------------------------- 266 (397)
+++|+.++++
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 2233333222
Q ss_pred ------CCeeeEEeccHHhhh-----cCCCCCcEEEeecC---------------CCeeEEEe--------c-cCCCCCC
Q 045321 267 ------NPNLSCYHSGVSNSL-----LGLHKLECLKLVNE---------------SKLSRVVL--------S-KYQFPLS 311 (397)
Q Consensus 267 ------~~~L~i~~~~~~~~l-----~~l~~L~~L~l~~~---------------~~L~~L~l--------~-~~~~l~~ 311 (397)
+|.+ ...++..+ +.+++|+.++++++ ++++.|.+ . ... +++
T Consensus 250 ~~L~l~~n~l---~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-l~~ 325 (520)
T 2z7x_B 250 WYFSISNVKL---QGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK-ISP 325 (520)
T ss_dssp SEEEEEEEEE---ESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS-CCC
T ss_pred cEEEeecccc---cCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh-CCc
Confidence 2221 12334444 44445555544432 12444444 1 134 778
Q ss_pred ceEEEEecccCCCCCccccccCcCCceEEEecccccCc-eeEEeCCCCCCCCCEEEEecCCCcCc-EEEC-CCccccccc
Q 045321 312 LSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGR-KLACVGSSSFPKLTVLHLKSMYWQDE-WTMG-AGAMPKLES 388 (397)
Q Consensus 312 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~-~~~~-~~~~p~L~~ 388 (397)
|++|++++|.+....+..++.+++|++|++++|...+. .++.. ...+++|+.|+++++. +.. ++.. ...+++|+.
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~-~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM-TTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH-HTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH-HhhCCCCCEEECCCCc-CCcccccchhccCccCCE
Confidence 88888888887666677788888888888877665431 12222 4677788888888764 333 4322 334566666
Q ss_pred cccccc
Q 045321 389 LIVNPC 394 (397)
Q Consensus 389 L~i~~C 394 (397)
|++++|
T Consensus 404 L~Ls~N 409 (520)
T 2z7x_B 404 LNMSSN 409 (520)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 666655
No 30
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.86 E-value=9.6e-21 Score=176.38 Aligned_cols=241 Identities=17% Similarity=0.154 Sum_probs=193.4
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
-.++++.|.+.++... .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|.++++|..+. ++
T Consensus 50 ~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~ 122 (330)
T 1xku_A 50 LPPDTALLDLQNNKIT-----EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KT 122 (330)
T ss_dssp CCTTCCEEECCSSCCC-----CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TT
T ss_pred CCCCCeEEECCCCcCC-----EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--cc
Confidence 3578999999999876 44 43459999999999999999866 7889999999999999999999998776 79
Q ss_pred CcEEecCCcccccchh-hhhccccCcEEEecCCCCCC---CCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321 213 LQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPA---PPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE 288 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~---~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~ 288 (397)
|++|++++|.+..++. .++++++|++|+++ ++... ..+..++.+++|+.+++++|.+ ..++..+. ++|+
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l----~~l~~~~~--~~L~ 195 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELG-TNPLKSSGIENGAFQGMKKLSYIRIADTNI----TTIPQGLP--PSLT 195 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECC-SSCCCGGGBCTTGGGGCTTCCEEECCSSCC----CSCCSSCC--TTCS
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECC-CCcCCccCcChhhccCCCCcCEEECCCCcc----ccCCcccc--ccCC
Confidence 9999999998888776 48999999999999 87654 4566789999999999999865 34444443 7899
Q ss_pred EEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEE
Q 045321 289 CLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHL 367 (397)
Q Consensus 289 ~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l 367 (397)
.|+++++ .++.+.. ++.. +++|++|++++|.+.......++.+++|++|++++|... .++.. ...+++|+.|++
T Consensus 196 ~L~l~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~--~lp~~-l~~l~~L~~L~l 270 (330)
T 1xku_A 196 ELHLDGN-KITKVDAASLKG-LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGG-LADHKYIQVVYL 270 (330)
T ss_dssp EEECTTS-CCCEECTGGGTT-CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTT-TTTCSSCCEEEC
T ss_pred EEECCCC-cCCccCHHHhcC-CCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc--cCChh-hccCCCcCEEEC
Confidence 9999884 4555532 5677 999999999999986666667899999999999887665 33444 678899999999
Q ss_pred ecCCCcCcEEECC-------Ccccccccccccccc
Q 045321 368 KSMYWQDEWTMGA-------GAMPKLESLIVNPCA 395 (397)
Q Consensus 368 ~~~~~l~~~~~~~-------~~~p~L~~L~i~~C~ 395 (397)
++++ +..++... ...+.|+.+++.+.|
T Consensus 271 ~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 271 HNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp CSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred CCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 9864 66664321 124778888887655
No 31
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=1.6e-21 Score=196.59 Aligned_cols=262 Identities=18% Similarity=0.160 Sum_probs=165.8
Q ss_pred CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccccCCCCCce
Q 045321 115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGLENLILLKH 192 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~~~l~~L~~ 192 (397)
.+++.+.+..+.... .+. ..+++|++|.+.++... .++.+ .++.|++|++++|... .. .++.+++|++
T Consensus 285 ~~L~~L~l~~~~~~~-l~~l~~~~~L~~L~l~~n~l~-----~lp~~--~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~ 354 (606)
T 3vq2_A 285 ANVSAMSLAGVSIKY-LEDVPKHFKWQSLSIIRCQLK-----QFPTL--DLPFLKSLTLTMNKGSISF--KKVALPSLSY 354 (606)
T ss_dssp TTCSEEEEESCCCCC-CCCCCTTCCCSEEEEESCCCS-----SCCCC--CCSSCCEEEEESCSSCEEC--CCCCCTTCCE
T ss_pred CCCCEEEecCccchh-hhhccccccCCEEEcccccCc-----ccccC--CCCccceeeccCCcCccch--hhccCCCCCE
Confidence 445555555322222 224 55566666666666552 33322 5566666666666422 22 3456666666
Q ss_pred EecCCCCCccc---CccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCC--ccccCCCCCcEEEcCC
Q 045321 193 LKLNIPSLKCL---PSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPK--NYSSSLKNLIFISALN 267 (397)
Q Consensus 193 L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p--~~i~~l~~L~~l~l~~ 267 (397)
|++++|.+..+ |..++.+++|++|++++|.+..+|..+..+++|+.|+++ ++.....+ ..++.+++|+.+++++
T Consensus 355 L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~l~~ 433 (606)
T 3vq2_A 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ-HSTLKRVTEFSAFLSLEKLLYLDISY 433 (606)
T ss_dssp EECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECT-TSEEESTTTTTTTTTCTTCCEEECTT
T ss_pred EECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECC-CCccCCccChhhhhccccCCEEECcC
Confidence 66666666544 566666677777777766666666666666777777776 65533333 3566667777777766
Q ss_pred CeeeEEeccHHhhhcCCCCCcEEEeecCCCeeE--EEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 268 PNLSCYHSGVSNSLLGLHKLECLKLVNESKLSR--VVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 268 ~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~--L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
|.+ ....+..++.+++|+.|+++++ .+.. ++-++.. +++|++|++++|.+....+..++.+++|++|++++|.
T Consensus 434 n~l---~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 508 (606)
T 3vq2_A 434 TNT---KIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFAN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508 (606)
T ss_dssp SCC---EECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCC---CccchhhhcCCCCCCEEECCCC-cCCCcchHHhhcc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCc
Confidence 655 3445556666777777777664 2221 2224566 8889999999988766666778888999999997776
Q ss_pred ccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccc-ccccccccccc
Q 045321 346 YLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMP-KLESLIVNPCA 395 (397)
Q Consensus 346 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p-~L~~L~i~~C~ 395 (397)
..+. .+.. ...+++|+.|+++++. +..++.....+| +|+.|++.++|
T Consensus 509 l~~~-~~~~-~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 509 LLFL-DSSH-YNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp CSCE-EGGG-TTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred CCCc-CHHH-ccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 5443 2333 6778889999998874 778877666776 58888888765
No 32
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.86 E-value=6.3e-21 Score=185.31 Aligned_cols=246 Identities=15% Similarity=0.094 Sum_probs=183.5
Q ss_pred CCCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321 114 LANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL 193 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L 193 (397)
..+++++.+..+.... .+-..+++|++|.+.++.... + ++ ..++.|++|++++|.++.+| ++.+++|++|
T Consensus 63 l~~L~~L~Ls~n~l~~-~~~~~l~~L~~L~Ls~N~l~~-----~-~~-~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L 132 (457)
T 3bz5_A 63 LTGLTKLICTSNNITT-LDLSQNTNLTYLACDSNKLTN-----L-DV-TPLTKLTYLNCDTNKLTKLD--VSQNPLLTYL 132 (457)
T ss_dssp CTTCSEEECCSSCCSC-CCCTTCTTCSEEECCSSCCSC-----C-CC-TTCTTCCEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred cCCCCEEEccCCcCCe-EccccCCCCCEEECcCCCCce-----e-ec-CCCCcCCEEECCCCcCCeec--CCCCCcCCEE
Confidence 6789999998544333 222788999999999998763 2 34 89999999999999999886 8999999999
Q ss_pred ecCCCCCcccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321 194 KLNIPSLKCLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC 272 (397)
Q Consensus 194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i 272 (397)
++++|.++.+| ++.+++|++|++++| .+..+ .++.+++|++|+++ ++....+| ++.+++|+.+++++|.+
T Consensus 133 ~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls-~n~l~~l~--l~~l~~L~~L~l~~N~l-- 203 (457)
T 3bz5_A 133 NCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS-FNKITELD--VSQNKLLNRLNCDTNNI-- 203 (457)
T ss_dssp ECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC-SSCCCCCC--CTTCTTCCEEECCSSCC--
T ss_pred ECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC-CCccceec--cccCCCCCEEECcCCcC--
Confidence 99999999885 889999999999999 77777 47889999999999 88887776 88999999999999866
Q ss_pred EeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEe----------
Q 045321 273 YHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLK---------- 342 (397)
Q Consensus 273 ~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~---------- 342 (397)
..+ .++.+++|+.|+++++ .++.++ +.. +++|+.|++++|.+...+ ++.+++|+.|.++
T Consensus 204 --~~~--~l~~l~~L~~L~Ls~N-~l~~ip--~~~-l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~ 272 (457)
T 3bz5_A 204 --TKL--DLNQNIQLTFLDCSSN-KLTEID--VTP-LTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLT 272 (457)
T ss_dssp --SCC--CCTTCTTCSEEECCSS-CCSCCC--CTT-CTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCT
T ss_pred --Cee--ccccCCCCCEEECcCC-cccccC--ccc-cCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECC
Confidence 222 4788999999999984 455543 556 888889999888875544 3344444444433
Q ss_pred cccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccccC
Q 045321 343 QNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAY 396 (397)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~ 396 (397)
+|...+ .++ .+.+++|+.|++++|+.++.++. .+++|+.|++++|++
T Consensus 273 ~n~~~~-~~~---~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 273 HNTQLI-YFQ---AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQNPK 319 (457)
T ss_dssp TCTTCC-EEE---CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTCTT
T ss_pred CCccCC-ccc---ccccccCCEEECCCCcccceecc---CCCcceEechhhccc
Confidence 232222 122 35667777777777776666653 234444444444443
No 33
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=7.1e-22 Score=182.04 Aligned_cols=224 Identities=18% Similarity=0.144 Sum_probs=183.6
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc---cccccCCCCCceEecCCCCCcccCccccCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF---PLGLENLILLKHLKLNIPSLKCLPSLLCTI 210 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l 210 (397)
-.+++++|.+.++... .+ +.+|..+++|++|++++|.+..+ |..+..+.+|++|++++|.+..+|..+..+
T Consensus 26 ~~~~l~~L~L~~n~l~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l 100 (306)
T 2z66_A 26 IPSSATRLELESNKLQ-----SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL 100 (306)
T ss_dssp CCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETC
T ss_pred CCCCCCEEECCCCccC-----ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCC
Confidence 3478999999998875 45 55568999999999999998744 677788999999999999999999999999
Q ss_pred CCCcEEecCCcccccchh--hhhccccCcEEEecCCCCCCC-CCccccCCCCCcEEEcCCCeeeEEec-cHHhhhcCCCC
Q 045321 211 LNLQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFISALNPNLSCYHS-GVSNSLLGLHK 286 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l~l~~~~L~i~~~-~~~~~l~~l~~ 286 (397)
++|++|++++|.+..+|. .+..+++|++|+++ ++.... .|..++.+++|+.+++++|.+ .. ..+..+..+++
T Consensus 101 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~~l~~ 176 (306)
T 2z66_A 101 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS-HTHTRVAFNGIFNGLSSLEVLKMAGNSF---QENFLPDIFTELRN 176 (306)
T ss_dssp TTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT-TSCCEECSTTTTTTCTTCCEEECTTCEE---GGGEECSCCTTCTT
T ss_pred CCCCEEECCCCcccccccchhhhhccCCCEEECC-CCcCCccchhhcccCcCCCEEECCCCcc---ccccchhHHhhCcC
Confidence 999999999998888875 68999999999999 876543 455688999999999999966 23 46778899999
Q ss_pred CcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCC-CCCE
Q 045321 287 LECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFP-KLTV 364 (397)
Q Consensus 287 L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-~L~~ 364 (397)
|+.|+++++ .++.+.. ++.. +++|++|++++|.+.......++.+++|+.|++++|...+.. +.. ...++ +|+.
T Consensus 177 L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-~~~-~~~~~~~L~~ 252 (306)
T 2z66_A 177 LTFLDLSQC-QLEQLSPTAFNS-LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSK-KQE-LQHFPSSLAF 252 (306)
T ss_dssp CCEEECTTS-CCCEECTTTTTT-CTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCS-SSS-CCCCCTTCCE
T ss_pred CCEEECCCC-CcCCcCHHHhcC-CCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccC-HHH-HHhhhccCCE
Confidence 999999984 5555532 5666 899999999999987666667889999999999877665432 222 45664 8999
Q ss_pred EEEecCC
Q 045321 365 LHLKSMY 371 (397)
Q Consensus 365 L~l~~~~ 371 (397)
|++++++
T Consensus 253 L~L~~N~ 259 (306)
T 2z66_A 253 LNLTQND 259 (306)
T ss_dssp EECTTCC
T ss_pred EEccCCC
Confidence 9999865
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.86 E-value=6.1e-21 Score=190.60 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=73.8
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL 190 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L 190 (397)
+.+++++.+..+.....++. ..+++|++|.+.++... .+ ++.|..++.|++|++++|.++.+|.. .+.+|
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L 123 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASL 123 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTC
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccC
Confidence 45677777775554444433 77788888888877665 33 44457778888888888887777766 67888
Q ss_pred ceEecCCCCCcccC--ccccCCCCCcEEecCCcccc
Q 045321 191 KHLKLNIPSLKCLP--SLLCTILNLQTLEMPSSYVD 224 (397)
Q Consensus 191 ~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~l~ 224 (397)
++|++++|.+..+| ..++++++|++|++++|.+.
T Consensus 124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~ 159 (562)
T 3a79_B 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR 159 (562)
T ss_dssp SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCC
T ss_pred CEEECCCCCccccCchHhhcccCcccEEecCCCccc
Confidence 88888888777654 67777888888887777544
No 35
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=3.5e-21 Score=187.91 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=133.4
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL 213 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 213 (397)
..++++++|.+.++... .++.+ ..+++|++|++++|.++.+|+ ++++++|++|++++|.+..+|. ++++++|
T Consensus 43 ~~l~~l~~L~l~~~~i~-----~l~~~-~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIK-----SIDGV-EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred hHhccccEEecCCCCCc-----cCcch-hhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCC
Confidence 34678999999888765 45565 889999999999999998887 9999999999999999998887 9999999
Q ss_pred cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc--------------------cccCCCCCcEEEcCCCeeeEE
Q 045321 214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN--------------------YSSSLKNLIFISALNPNLSCY 273 (397)
Q Consensus 214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~--------------------~i~~l~~L~~l~l~~~~L~i~ 273 (397)
++|++++|.+..+|. ++++++|++|+++ +|....++. .++++++|+.+++++|.+
T Consensus 115 ~~L~L~~n~l~~~~~-~~~l~~L~~L~l~-~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l--- 189 (466)
T 1o6v_A 115 TGLTLFNNQITDIDP-LKNLTNLNRLELS-SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKV--- 189 (466)
T ss_dssp CEEECCSSCCCCCGG-GTTCTTCSEEEEE-EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCC---
T ss_pred CEEECCCCCCCCChH-HcCCCCCCEEECC-CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcC---
Confidence 999999999988887 8999999999998 776554432 134445555555555533
Q ss_pred eccHHhhhcCCCCCcEEEeecC-----------CCeeEEEe---------ccCCCCCCceEEEEecccCCCCCccccccC
Q 045321 274 HSGVSNSLLGLHKLECLKLVNE-----------SKLSRVVL---------SKYQFPLSLSHLSLSNTELMQDPMPIMEKL 333 (397)
Q Consensus 274 ~~~~~~~l~~l~~L~~L~l~~~-----------~~L~~L~l---------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l 333 (397)
..+ ..+..+++|+.|+++++ ++|+.|.+ .+.. +++|++|++++|.+... ..++.+
T Consensus 190 -~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~-l~~L~~L~l~~n~l~~~--~~~~~l 264 (466)
T 1o6v_A 190 -SDI-SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS-LTNLTDLDLANNQISNL--APLSGL 264 (466)
T ss_dssp -CCC-GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGG-CTTCSEEECCSSCCCCC--GGGTTC
T ss_pred -CCC-hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhc-CCCCCEEECCCCccccc--hhhhcC
Confidence 111 23455555666655543 34444444 1222 45555555555554221 124445
Q ss_pred cCCceEEEeccc
Q 045321 334 PRLQVLKLKQNS 345 (397)
Q Consensus 334 ~~L~~L~L~~~~ 345 (397)
++|++|++++|.
T Consensus 265 ~~L~~L~l~~n~ 276 (466)
T 1o6v_A 265 TKLTELKLGANQ 276 (466)
T ss_dssp TTCSEEECCSSC
T ss_pred CCCCEEECCCCc
Confidence 555555554443
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.86 E-value=4.4e-21 Score=186.50 Aligned_cols=247 Identities=16% Similarity=0.095 Sum_probs=182.6
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcc-cc-cccccCCCCCceEecCCCCCccc-CccccCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD-QF-PLGLENLILLKHLKLNIPSLKCL-PSLLCTI 210 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~-~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l 210 (397)
-.+++++|.+.++... .+ +..|..+++|++|++++|.+. .+ |..++++++|++|++++|.+..+ |..++++
T Consensus 28 l~~~l~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 102 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIA-----ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGL 102 (455)
T ss_dssp CCTTCCEEECCSSCCC-----EECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTC
T ss_pred CCCccCEEEecCCccC-----cCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCc
Confidence 3478999999999876 34 555599999999999999986 45 56799999999999999999866 7889999
Q ss_pred CCCcEEecCCccccc-chhh--hhccccCcEEEecCCCCCCCC-Ccc-ccCCCCCcEEEcCCCeeeEEeccHHhhh----
Q 045321 211 LNLQTLEMPSSYVDH-SLED--IWMMQKLMHLNFGSITLPAPP-KNY-SSSLKNLIFISALNPNLSCYHSGVSNSL---- 281 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~-p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l---- 281 (397)
++|++|++++|.+.. .|.. ++.+++|++|+++ ++....+ |.. ++++++|+.+++++|.+ ....+..+
T Consensus 103 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~l~~L~~L~L~~n~l---~~~~~~~l~~l~ 178 (455)
T 3v47_A 103 ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLR-DNNIKKIQPASFFLNMRRFHVLDLTFNKV---KSICEEDLLNFQ 178 (455)
T ss_dssp TTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECC-SSBCCSCCCCGGGGGCTTCCEEECTTCCB---SCCCTTTSGGGT
T ss_pred ccCCEEeCCCCCCCccccCcccccCcccCCEEECC-CCccCccCcccccCCCCcccEEeCCCCcc---cccChhhhhccc
Confidence 999999999998775 4554 8999999999999 8887666 444 88999999999999855 22222222
Q ss_pred ------------------------------cCCCCCcEEEeecC----------------C-------------------
Q 045321 282 ------------------------------LGLHKLECLKLVNE----------------S------------------- 296 (397)
Q Consensus 282 ------------------------------~~l~~L~~L~l~~~----------------~------------------- 296 (397)
..+++|+.|+++++ +
T Consensus 179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence 23467888888875 2
Q ss_pred -----------------CeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 297 -----------------KLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 297 -----------------~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
+|+.+.+ +++. +++|++|++++|.+....+..++.+++|++|++++|....
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 337 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSH-FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGS 337 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhccc-CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCC
Confidence 3444444 2344 6777777777777655555567777778888876665422
Q ss_pred ceeEEeCCCCCCCCCEEEEecCCCcCcE-EECCCccccccccccccc
Q 045321 349 RKLACVGSSSFPKLTVLHLKSMYWQDEW-TMGAGAMPKLESLIVNPC 394 (397)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~-~~~~~~~p~L~~L~i~~C 394 (397)
..+.. ...+++|+.|+++++. +..+ +.....+++|++|++++|
T Consensus 338 -~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N 381 (455)
T 3v47_A 338 -IDSRM-FENLDKLEVLDLSYNH-IRALGDQSFLGLPNLKELALDTN 381 (455)
T ss_dssp -ECGGG-GTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS
T ss_pred -cChhH-hcCcccCCEEECCCCc-ccccChhhccccccccEEECCCC
Confidence 11222 5677888888888763 5555 334566788888888775
No 37
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.86 E-value=2.6e-21 Score=178.27 Aligned_cols=225 Identities=16% Similarity=0.149 Sum_probs=152.2
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILL 190 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L 190 (397)
+.+++++.+..+.....+.. ..+++|++|.+.++.... .... ..+ ..++.|++|++++|.+..+|..+..+++|
T Consensus 27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L 103 (306)
T 2z66_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF--KGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQL 103 (306)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCE--EEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTC
T ss_pred CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCc--ccCccccc-ccccccCEEECCCCccccChhhcCCCCCC
Confidence 45677777774444443433 567788888887776542 1111 333 56777888888888877777777778888
Q ss_pred ceEecCCCCCcccCc--cccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCC--CCccccCCCCCcEEEc
Q 045321 191 KHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAP--PKNYSSSLKNLIFISA 265 (397)
Q Consensus 191 ~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~l~l 265 (397)
++|++++|.+..+|. .+..+++|++|++++|.+... |..+..+++|++|+++ ++.... +|..++.+++|+.+++
T Consensus 104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~l~~L~~L~L 182 (306)
T 2z66_A 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA-GNSFQENFLPDIFTELRNLTFLDL 182 (306)
T ss_dssp CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECT-TCEEGGGEECSCCTTCTTCCEEEC
T ss_pred CEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECC-CCccccccchhHHhhCcCCCEEEC
Confidence 888888877776653 677778888888887765544 3447777788888887 665443 6677777888888888
Q ss_pred CCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCc-CCceEEEec
Q 045321 266 LNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLP-RLQVLKLKQ 343 (397)
Q Consensus 266 ~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~-~L~~L~L~~ 343 (397)
++|.+ ....+..+..+++|+.|+++++ .++.+.. .+.. +++|++|++++|.+....+..+..++ +|++|++++
T Consensus 183 s~n~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~ 257 (306)
T 2z66_A 183 SQCQL---EQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKC-LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257 (306)
T ss_dssp TTSCC---CEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTT-CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTT
T ss_pred CCCCc---CCcCHHHhcCCCCCCEEECCCC-ccCccChhhccC-cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccC
Confidence 77765 3344566777778888888763 3333322 3455 77788888888877666666677774 788888866
Q ss_pred cccc
Q 045321 344 NSYL 347 (397)
Q Consensus 344 ~~~~ 347 (397)
|.+.
T Consensus 258 N~~~ 261 (306)
T 2z66_A 258 NDFA 261 (306)
T ss_dssp CCEE
T ss_pred CCee
Confidence 6553
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.86 E-value=4e-21 Score=192.09 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=109.7
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~ 189 (397)
+..++++.+..+........ ..+++|++|.+.++... .+ +..|.++++|++|++++|.++.+| ..++++.+
T Consensus 27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 55688888885444443333 77888999988888765 34 444588888888888888887665 67888888
Q ss_pred CceEecCCCCCcccCc-cccCCCCCcEEecCCccccc--chhhhhccccCcEEEecCCCCCCCCC-ccccCCCCC----c
Q 045321 190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITLPAPPK-NYSSSLKNL----I 261 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~~~p-~~i~~l~~L----~ 261 (397)
|++|++++|.+..+|. .++++++|++|++++|.+.. +|..++++++|++|+++ ++....++ ..++.+++| +
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT-TSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCc-CCccceecHHHccchhccchhhh
Confidence 8888888888887765 58888888888888886664 67888888888888888 77655543 445555555 5
Q ss_pred EEEcCCC
Q 045321 262 FISALNP 268 (397)
Q Consensus 262 ~l~l~~~ 268 (397)
.+++++|
T Consensus 181 ~L~l~~n 187 (570)
T 2z63_A 181 SLDLSLN 187 (570)
T ss_dssp EEECTTC
T ss_pred hcccCCC
Confidence 5666554
No 39
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.85 E-value=1.3e-21 Score=182.46 Aligned_cols=258 Identities=13% Similarity=0.108 Sum_probs=194.9
Q ss_pred CeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceE
Q 045321 116 NVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHL 193 (397)
Q Consensus 116 ~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L 193 (397)
.++.+.+..+.... .+..-.+++++|.+.++... .+ +..|..+++|++|++++|.++.+ |..++++++|++|
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~~~~l~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 107 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEISPDTTLLDLQNNDIS-----ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL 107 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCCCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE
T ss_pred cCCEEECCCCCccc-cCCCCCCCCeEEECCCCcCC-----ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE
Confidence 34555555222222 33333578999999998775 34 44458999999999999999866 7789999999999
Q ss_pred ecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCC---CCCccccCCCCCcEEEcCCCe
Q 045321 194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPA---PPKNYSSSLKNLIFISALNPN 269 (397)
Q Consensus 194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~---~~p~~i~~l~~L~~l~l~~~~ 269 (397)
++++|.+.++|..+. ++|++|++++|.+..+|.. ++.+++|++|+++ ++... ..|..++.+ +|+.+++++|.
T Consensus 108 ~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~~~l-~L~~L~l~~n~ 183 (332)
T 2ft3_A 108 YISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG-GNPLENSGFEPGAFDGL-KLNYLRISEAK 183 (332)
T ss_dssp ECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC-SCCCBGGGSCTTSSCSC-CCSCCBCCSSB
T ss_pred ECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECC-CCccccCCCCcccccCC-ccCEEECcCCC
Confidence 999999999998776 8999999999988888765 8899999999999 77653 445667777 89999999886
Q ss_pred eeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 270 LSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 270 L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
+ ..++..+. ++|+.|+++++ .++.+.. .+.. +++|++|++++|.+.......++.+++|++|++++|...
T Consensus 184 l----~~l~~~~~--~~L~~L~l~~n-~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~- 254 (332)
T 2ft3_A 184 L----TGIPKDLP--ETLNELHLDHN-KIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254 (332)
T ss_dssp C----SSCCSSSC--SSCSCCBCCSS-CCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-
T ss_pred C----CccCcccc--CCCCEEECCCC-cCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-
Confidence 5 34554443 68888998874 3444331 4566 899999999999987766678999999999999877664
Q ss_pred ceeEEeCCCCCCCCCEEEEecCCCcCcEEECC-------Ccccccccccccccc
Q 045321 349 RKLACVGSSSFPKLTVLHLKSMYWQDEWTMGA-------GAMPKLESLIVNPCA 395 (397)
Q Consensus 349 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-------~~~p~L~~L~i~~C~ 395 (397)
.++.. ...+++|+.|+++++ .+..++... ..+++|+.|++.++|
T Consensus 255 -~lp~~-l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 255 -RVPAG-LPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp -BCCTT-GGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred -ecChh-hhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc
Confidence 34444 677899999999986 466664321 125778899888776
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.85 E-value=7.6e-22 Score=196.50 Aligned_cols=149 Identities=19% Similarity=0.128 Sum_probs=117.2
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~ 189 (397)
...++++.+..+......+. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+|.. ++++++
T Consensus 25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-----ccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 46789999885555554443 88999999999998875 33 44558999999999999999877654 899999
Q ss_pred CceEecCCCCCcc--cCccccCCCCCcEEecCCcc-cccchh-hhhccccCcEEEecCCCCCCC-CCccccCCCCCcEEE
Q 045321 190 LKHLKLNIPSLKC--LPSLLCTILNLQTLEMPSSY-VDHSLE-DIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFIS 264 (397)
Q Consensus 190 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l~ 264 (397)
|++|++++|.+.. .|..++++++|++|++++|. +..+|. .++.+++|++|+++ ++.... .|..++.+++|+.++
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIK-ALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEE
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeecc-CCcccccChhhhhccccCceEe
Confidence 9999999999874 46788999999999999994 778874 68899999999998 776443 566777766666666
Q ss_pred cCCC
Q 045321 265 ALNP 268 (397)
Q Consensus 265 l~~~ 268 (397)
++.+
T Consensus 179 l~~n 182 (549)
T 2z81_A 179 LHLS 182 (549)
T ss_dssp EECS
T ss_pred cccC
Confidence 5544
No 41
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.85 E-value=2.6e-21 Score=197.65 Aligned_cols=270 Identities=15% Similarity=0.072 Sum_probs=176.6
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~ 189 (397)
+.+++++.+..+.....+.. ..+++|++|.+.++... .+ +..|.+++.|++|++++|.++.+|. .++++++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS-----KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCC-----CCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccC-----ccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 56788998885555554443 77899999999888765 33 5555889999999999999888876 5889999
Q ss_pred CceEecCCCCCcccC-ccccCCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCCCCcc---ccCCCCCcEEE
Q 045321 190 LKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAPPKNY---SSSLKNLIFIS 264 (397)
Q Consensus 190 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~p~~---i~~l~~L~~l~ 264 (397)
|++|++++|.+..+| ..++++++|++|++++|.+...+ ..++++++|++|+++ ++....+++. ...+++|+.++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~~~~~~L~~L~ 177 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS-NNKIQALKSEELDIFANSSLKKLE 177 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC-SSCCCCBCHHHHGGGTTCEESEEE
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEcc-CCcccccCHHHhhccccccccEEE
Confidence 999999999888776 56889999999999999666654 457889999999998 7776665543 23567888888
Q ss_pred cCCCeeeEEeccHHhhhcCC---------------------------CCCcEEEeecC---------------CCeeEEE
Q 045321 265 ALNPNLSCYHSGVSNSLLGL---------------------------HKLECLKLVNE---------------SKLSRVV 302 (397)
Q Consensus 265 l~~~~L~i~~~~~~~~l~~l---------------------------~~L~~L~l~~~---------------~~L~~L~ 302 (397)
+++|.+ ....+..+..+ ++|+.|+++++ ++|+.|.
T Consensus 178 L~~n~l---~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~ 254 (680)
T 1ziw_A 178 LSSNQI---KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLD 254 (680)
T ss_dssp CTTCCC---CCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEE
T ss_pred CCCCcc---cccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEE
Confidence 888754 22333333333 34555555442 1255554
Q ss_pred e-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCc----eeEE---eCCCCCCCCCE
Q 045321 303 L-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGR----KLAC---VGSSSFPKLTV 364 (397)
Q Consensus 303 l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~----~~~~---~~~~~~~~L~~ 364 (397)
+ +++. +++|++|++++|.+....+..++.+++|+.|+++++...+. .++. .....+++|+.
T Consensus 255 Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~ 333 (680)
T 1ziw_A 255 LSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEH 333 (680)
T ss_dssp CTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCE
T ss_pred CCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCE
Confidence 4 2344 66666777666665544445566666666666643221110 1111 01445667777
Q ss_pred EEEecCCCcCcEE-ECCCccccccccccccc
Q 045321 365 LHLKSMYWQDEWT-MGAGAMPKLESLIVNPC 394 (397)
Q Consensus 365 L~l~~~~~l~~~~-~~~~~~p~L~~L~i~~C 394 (397)
|+++++. +..++ .....+++|++|++++|
T Consensus 334 L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 334 LNMEDND-IPGIKSNMFTGLINLKYLSLSNS 363 (680)
T ss_dssp EECCSCC-BCCCCTTTTTTCTTCCEEECTTC
T ss_pred EECCCCc-cCCCChhHhccccCCcEEECCCC
Confidence 7777653 33332 22345667777776655
No 42
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.85 E-value=1.4e-20 Score=188.04 Aligned_cols=122 Identities=11% Similarity=0.001 Sum_probs=100.2
Q ss_pred EEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEec
Q 045321 118 KRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKL 195 (397)
Q Consensus 118 r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l 195 (397)
+++.+..+.... ++..-.+++++|.+.++... .+ +..|..+++|++|++++|.++.+ |..++++++|++|++
T Consensus 34 ~~l~ls~~~L~~-ip~~~~~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLPPRTKALSLSQNSIS-----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS-CCTTSCTTCCEEECCSSCCC-----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc-CCCCCCCCcCEEECCCCCcc-----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 666666333333 33322489999999999876 44 44559999999999999999966 678999999999999
Q ss_pred CCCCCcccCccccCCCCCcEEecCCcccccch--hhhhccccCcEEEecCCCCCC
Q 045321 196 NIPSLKCLPSLLCTILNLQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPA 248 (397)
Q Consensus 196 ~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~ 248 (397)
++|.++++|.. .+++|++|++++|.+..+| ..++++++|++|+++ ++...
T Consensus 108 s~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~-~n~l~ 159 (562)
T 3a79_B 108 SHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLS-AAKFR 159 (562)
T ss_dssp TTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEE-CSBCC
T ss_pred CCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecC-CCccc
Confidence 99999999987 8999999999999888765 789999999999999 76543
No 43
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.84 E-value=3.6e-21 Score=180.99 Aligned_cols=248 Identities=15% Similarity=0.067 Sum_probs=184.8
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTIL 211 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~ 211 (397)
-.++|++|.+.++... .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|.++.+|.. +++++
T Consensus 50 ~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 124 (353)
T 2z80_A 50 LTEAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLS 124 (353)
T ss_dssp CCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCT
T ss_pred ccccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCc
Confidence 3468999999988875 34 43448899999999999998866 46789999999999999999998876 78999
Q ss_pred CCcEEecCCcccccchh--hhhccccCcEEEecCCC-CCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321 212 NLQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSIT-LPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL 287 (397)
Q Consensus 212 ~L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~-~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L 287 (397)
+|++|++++|.+..+|. .++.+++|++|+++ ++ ....+ |..++.+++|+.+++++|.+ ....+..+..+++|
T Consensus 125 ~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~-~n~~~~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~l~~l~~L 200 (353)
T 2z80_A 125 SLTFLNLLGNPYKTLGETSLFSHLTKLQILRVG-NMDTFTKIQRKDFAGLTFLEELEIDASDL---QSYEPKSLKSIQNV 200 (353)
T ss_dssp TCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTC---CEECTTTTTTCSEE
T ss_pred cCCEEECCCCCCcccCchhhhccCCCCcEEECC-CCccccccCHHHccCCCCCCEEECCCCCc---CccCHHHHhccccC
Confidence 99999999998888887 68899999999999 76 35555 45688899999999988866 34457788889999
Q ss_pred cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCcccc---ccCcCCceEEEecccccCce---eEEeCCCCCC
Q 045321 288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIM---EKLPRLQVLKLKQNSYLGRK---LACVGSSSFP 360 (397)
Q Consensus 288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~---~~~~~~~~~~ 360 (397)
+.|+++++. +..+.- .+.. +++|++|++++|.+....+..+ ...+.++.++++++...+.. ++.. ...++
T Consensus 201 ~~L~l~~n~-l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~ 277 (353)
T 2z80_A 201 SHLILHMKQ-HILLLEIFVDV-TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQIS 277 (353)
T ss_dssp EEEEEECSC-STTHHHHHHHH-TTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCT
T ss_pred CeecCCCCc-cccchhhhhhh-cccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHH-Hhccc
Confidence 999998743 322211 2233 7899999999998765444333 34567777777655443321 1222 45678
Q ss_pred CCCEEEEecCCCcCcEEECC-Ccccccccccccccc
Q 045321 361 KLTVLHLKSMYWQDEWTMGA-GAMPKLESLIVNPCA 395 (397)
Q Consensus 361 ~L~~L~l~~~~~l~~~~~~~-~~~p~L~~L~i~~C~ 395 (397)
+|+.|+++++ .+..++... +.+++|++|+++++|
T Consensus 278 ~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 278 GLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence 8888888876 466676553 677888888888765
No 44
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=5.1e-20 Score=178.37 Aligned_cols=220 Identities=19% Similarity=0.163 Sum_probs=139.8
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~ 189 (397)
..+++.+.+..+........ ..+++|++|.+.++... .+ +..|..+++|++|++++|.++.+|. .+.++++
T Consensus 63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 137 (440)
T 3zyj_A 63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-----TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSK 137 (440)
T ss_dssp CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-----EECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSS
T ss_pred CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-----ccChhhccCCccCCEEECCCCcCCeeCHhHhhcccc
Confidence 44566666664443333333 66677777777776654 33 3444667777777777777766654 4667777
Q ss_pred CceEecCCCCCcccCc-cccCCCCCcEEecCCc-ccccchh-hhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcC
Q 045321 190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSS-YVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISAL 266 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~-~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~ 266 (397)
|++|++++|.+..+|. .+..+++|++|++++| .+..+|. .+..+++|++|+++ +|....+| .+..+++|+.++++
T Consensus 138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLA-MCNLREIP-NLTPLIKLDELDLS 215 (440)
T ss_dssp CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECT-TSCCSSCC-CCTTCSSCCEEECT
T ss_pred CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCC-CCcCcccc-ccCCCcccCEEECC
Confidence 7777777777766654 4666777777777765 5666655 36667777777777 66666665 46667777777777
Q ss_pred CCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 267 NPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 267 ~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
+|.+ ....+..+..+++|+.|++++ ..++.+.. .+.. +++|+.|+|++|.+...+...+..+++|+.|+|++|.
T Consensus 216 ~N~l---~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 216 GNHL---SAIRPGSFQGLMHLQKLWMIQ-SQIQVIERNAFDN-LQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TSCC---CEECTTTTTTCTTCCEEECTT-CCCCEECTTSSTT-CTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred CCcc---CccChhhhccCccCCEEECCC-CceeEEChhhhcC-CCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCC
Confidence 7655 334456666777777777766 34444432 3445 6777777777777665555556677777777776654
No 45
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.83 E-value=2.5e-21 Score=179.31 Aligned_cols=239 Identities=15% Similarity=0.092 Sum_probs=187.2
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
..+++|++|.+.++... .+ +..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|. .++
T Consensus 31 ~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~ 100 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPS 100 (317)
T ss_dssp TTGGGCSEEECTTSCCC-----CCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTT
T ss_pred ccCCCCCEEECcCCccC-----cCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCC
Confidence 66789999999998876 34 5555999999999999999986665 8999999999999999887763 489
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhh-cCCCCCcEE
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSL-LGLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l-~~l~~L~~L 290 (397)
|++|++++|.+..++.. .+++|++|+++ ++....+++ .++.+++|+.+++++|.+ ....+..+ ..+++|+.|
T Consensus 101 L~~L~l~~n~l~~~~~~--~~~~L~~L~l~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~l~~L~~L 174 (317)
T 3o53_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHL 174 (317)
T ss_dssp CCEEECCSSCCSEEEEC--CCSSCEEEECC-SSCCCSGGGBCTGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEE
T ss_pred cCEEECCCCccCCcCcc--ccCCCCEEECC-CCCCCCccchhhhccCCCCEEECCCCCC---CcccHHHHhhccCcCCEE
Confidence 99999999988888753 47899999999 888776654 688899999999999876 33334444 478999999
Q ss_pred EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321 291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 370 (397)
+++++ .++.+. .... +++|++|++++|.+.. .++.+..+++|++|++++|.+. .++.. ...+++|+.|+++++
T Consensus 175 ~L~~N-~l~~~~-~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~--~l~~~-~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 175 NLQYN-FIYDVK-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKA-LRFSQNLEHFDLRGN 247 (317)
T ss_dssp ECTTS-CCCEEE-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTT-CCCCTTCCEEECTTC
T ss_pred ECCCC-cCcccc-cccc-cccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc--chhhH-hhcCCCCCEEEccCC
Confidence 99984 566664 2334 8999999999999754 4455889999999999877664 34444 678899999999997
Q ss_pred CCc-CcEEECCCcccccccccccccc
Q 045321 371 YWQ-DEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 371 ~~l-~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+-. ..++.....+|+|+.+++.+|+
T Consensus 248 ~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 248 GFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CccCcCHHHHHhccccceEEECCCch
Confidence 643 2333444567888888877543
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=6.7e-20 Score=178.12 Aligned_cols=199 Identities=21% Similarity=0.172 Sum_probs=90.7
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCc-cccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPS-LLCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~-~~~~l 210 (397)
..+++|+.|.+.++... .+ +..|..+++|++|++++|.++.+|.. ++++++|++|++++|.+..+|. .+.++
T Consensus 96 ~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 170 (452)
T 3zyi_A 96 RHLHHLEVLQLGRNSIR-----QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRV 170 (452)
T ss_dssp TTCTTCCEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTC
T ss_pred CCCCCCCEEECCCCccC-----CcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcC
Confidence 44455555555544433 22 22234455555555555554444322 4445555555555555444433 34445
Q ss_pred CCCcEEecCCc-ccccchhh-hhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc
Q 045321 211 LNLQTLEMPSS-YVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE 288 (397)
Q Consensus 211 ~~L~~L~l~~~-~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~ 288 (397)
++|++|++++| .+..+|.. +..+++|++|+++ ++....+| .+..+++|+.+++++|.+ ....+..+..+++|+
T Consensus 171 ~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~-~n~l~~~~-~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~ 245 (452)
T 3zyi_A 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLG-MCNIKDMP-NLTPLVGLEELEMSGNHF---PEIRPGSFHGLSSLK 245 (452)
T ss_dssp TTCCEEECCCCTTCCEECTTTTTTCTTCCEEECT-TSCCSSCC-CCTTCTTCCEEECTTSCC---SEECGGGGTTCTTCC
T ss_pred CcccEEeCCCCCCccccChhhccCCCCCCEEECC-CCcccccc-cccccccccEEECcCCcC---cccCcccccCccCCC
Confidence 55555555543 44444432 4445555555555 44444443 344455555555555443 223344444555555
Q ss_pred EEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecc
Q 045321 289 CLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQN 344 (397)
Q Consensus 289 ~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~ 344 (397)
.|++++ ..++.+.. .+.. +++|+.|+|++|.+...+...+..+++|+.|+|++|
T Consensus 246 ~L~L~~-n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 246 KLWVMN-SQVSLIERNAFDG-LASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp EEECTT-SCCCEECTTTTTT-CTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred EEEeCC-CcCceECHHHhcC-CCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 555544 22332211 2333 455555555555544333334444555555555443
No 47
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.83 E-value=4.4e-20 Score=179.41 Aligned_cols=223 Identities=18% Similarity=0.119 Sum_probs=180.7
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l 210 (397)
.-.++++.|.+.++... .+ +..|..+++|++|++++|.++.++ ..+.++.+|++|++++|.+..+|.. +..+
T Consensus 72 ~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 146 (452)
T 3zyi_A 72 GIPSNTRYLNLMENNIQ-----MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYL 146 (452)
T ss_dssp CCCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSC
T ss_pred CCCCCccEEECcCCcCc-----eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhccc
Confidence 33478999999999876 34 455599999999999999998665 7789999999999999999988865 7889
Q ss_pred CCCcEEecCCcccccchh-hhhccccCcEEEecCCC-CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321 211 LNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT-LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL 287 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~-~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L 287 (397)
++|++|++++|.+..+|. .+.++++|++|+++ ++ ....++. .++.+++|+.+++++|.+ ..+ ..+..+++|
T Consensus 147 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l----~~~-~~~~~l~~L 220 (452)
T 3zyi_A 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG-ELKKLEYISEGAFEGLFNLKYLNLGMCNI----KDM-PNLTPLVGL 220 (452)
T ss_dssp TTCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCTTCCEEECTTSCC----SSC-CCCTTCTTC
T ss_pred CCCCEEECCCCCcceeCHhHHhcCCcccEEeCC-CCCCccccChhhccCCCCCCEEECCCCcc----ccc-ccccccccc
Confidence 999999999999888886 58899999999999 75 4556665 488899999999999866 333 357788999
Q ss_pred cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321 288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH 366 (397)
Q Consensus 288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 366 (397)
+.|+++++ .+..+.- ++.. +++|++|++++|.+....+..+..+++|+.|+|++|.+... +......+++|+.|+
T Consensus 221 ~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~ 296 (452)
T 3zyi_A 221 EELEMSGN-HFPEIRPGSFHG-LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELH 296 (452)
T ss_dssp CEEECTTS-CCSEECGGGGTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCC--CTTSSTTCTTCCEEE
T ss_pred cEEECcCC-cCcccCcccccC-ccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCcc--ChHHhccccCCCEEE
Confidence 99999884 4555432 5677 89999999999998776677789999999999987766532 222246789999999
Q ss_pred EecCC
Q 045321 367 LKSMY 371 (397)
Q Consensus 367 l~~~~ 371 (397)
+.+++
T Consensus 297 L~~Np 301 (452)
T 3zyi_A 297 LHHNP 301 (452)
T ss_dssp CCSSC
T ss_pred ccCCC
Confidence 98764
No 48
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.83 E-value=6.1e-20 Score=177.79 Aligned_cols=223 Identities=17% Similarity=0.149 Sum_probs=182.1
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTI 210 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l 210 (397)
.-.++++.|.+.++... .+ +..|..+++|++|++++|.+..++ ..+.++.+|++|++++|.++.+|. .+..+
T Consensus 61 ~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 135 (440)
T 3zyj_A 61 GISTNTRLLNLHENQIQ-----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYL 135 (440)
T ss_dssp CCCTTCSEEECCSCCCC-----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSC
T ss_pred CCCCCCcEEEccCCcCC-----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhcc
Confidence 34578999999999876 34 445599999999999999998665 678999999999999999999886 58899
Q ss_pred CCCcEEecCCcccccchh-hhhccccCcEEEecCCC-CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321 211 LNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT-LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL 287 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~-~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L 287 (397)
++|++|++++|.+..+|. .+.++++|++|+++ ++ ....++. .++.+++|+.+++++|.+ ..++ .+..+++|
T Consensus 136 ~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~-~~~~l~~i~~~~~~~l~~L~~L~L~~n~l----~~~~-~~~~l~~L 209 (440)
T 3zyj_A 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG-ELKRLSYISEGAFEGLSNLRYLNLAMCNL----REIP-NLTPLIKL 209 (440)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCTTCCEEECC-CCTTCCEECTTTTTTCSSCCEEECTTSCC----SSCC-CCTTCSSC
T ss_pred ccCceeeCCCCcccccCHHHhhhCcccCEeCCC-CCCCcceeCcchhhcccccCeecCCCCcC----cccc-ccCCCccc
Confidence 999999999999988886 58999999999999 75 4555555 588899999999999866 3343 47888999
Q ss_pred cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321 288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH 366 (397)
Q Consensus 288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 366 (397)
+.|+++++ .++.+.- .+.. +++|++|++++|.+.......+..+++|+.|+|++|.+.... ......+++|+.|+
T Consensus 210 ~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~ 285 (440)
T 3zyj_A 210 DELDLSGN-HLSAIRPGSFQG-LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP--HDLFTPLHHLERIH 285 (440)
T ss_dssp CEEECTTS-CCCEECTTTTTT-CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCC--TTTTSSCTTCCEEE
T ss_pred CEEECCCC-ccCccChhhhcc-CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccC--hhHhccccCCCEEE
Confidence 99999984 5665532 5666 899999999999987777778899999999999877665332 22146789999999
Q ss_pred EecCC
Q 045321 367 LKSMY 371 (397)
Q Consensus 367 l~~~~ 371 (397)
+.+++
T Consensus 286 L~~Np 290 (440)
T 3zyj_A 286 LHHNP 290 (440)
T ss_dssp CCSSC
T ss_pred cCCCC
Confidence 98754
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=7.9e-21 Score=189.12 Aligned_cols=129 Identities=16% Similarity=0.051 Sum_probs=111.1
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCcc-ccCCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSL-LCTILN 212 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 212 (397)
.++|++|.+.++... .+ +..|..+++|++|++++|.+..++ ..++++.+|++|++++|.+..+|+. ++++++
T Consensus 25 ~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 99 (549)
T 2z81_A 25 TAAMKSLDLSFNKIT-----YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99 (549)
T ss_dssp CTTCCEEECCSSCCC-----EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTT
T ss_pred CCCccEEECcCCccC-----ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCC
Confidence 478999999999875 33 444599999999999999998665 6799999999999999999988876 999999
Q ss_pred CcEEecCCccccc--chhhhhccccCcEEEecCCCC-CCCCC-ccccCCCCCcEEEcCCCee
Q 045321 213 LQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITL-PAPPK-NYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 213 L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~-~~~~p-~~i~~l~~L~~l~l~~~~L 270 (397)
|++|++++|.+.. .|..++++++|++|+++ ++. ...+| ..++++++|+.+++++|.+
T Consensus 100 L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~-~n~~~~~~~~~~~~~l~~L~~L~L~~n~l 160 (549)
T 2z81_A 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG-NVETFSEIRRIDFAGLTSLNELEIKALSL 160 (549)
T ss_dssp CCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE-ESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred CcEEECCCCcccccchhhhhhccCCccEEECC-CCccccccCHhhhhcccccCeeeccCCcc
Confidence 9999999998775 46779999999999999 775 55666 4789999999999988754
No 50
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=183.95 Aligned_cols=81 Identities=17% Similarity=0.208 Sum_probs=55.1
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc--ccccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ--FPLGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~--lp~~~~~l~~ 189 (397)
..+++++.+..+......+. ..+++|++|.+.++... .++.. .++.|++|++++|.+.. +|..++++++
T Consensus 44 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-----~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~ 116 (520)
T 2z7x_B 44 LSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-----KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQ 116 (520)
T ss_dssp CTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-----EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTT
T ss_pred cccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-----ecCcc--ccCCccEEeccCCccccccchhhhccCCc
Confidence 55677777775544444333 77788888888887664 33222 67778888888887764 5677777777
Q ss_pred CceEecCCCCCc
Q 045321 190 LKHLKLNIPSLK 201 (397)
Q Consensus 190 L~~L~l~~~~i~ 201 (397)
|++|++++|.+.
T Consensus 117 L~~L~L~~n~l~ 128 (520)
T 2z7x_B 117 LKFLGLSTTHLE 128 (520)
T ss_dssp CCEEEEEESSCC
T ss_pred ceEEEecCcccc
Confidence 777777776654
No 51
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.4e-19 Score=165.00 Aligned_cols=203 Identities=20% Similarity=0.193 Sum_probs=156.0
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCC-Cccc-CccccC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPS-LKCL-PSLLCT 209 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-i~~l-p~~~~~ 209 (397)
...++++.|.+.++... .+ +..|..+++|++|++++|.++.+ |..++++++|++|++++|. +..+ |..+..
T Consensus 29 ~~~~~l~~L~l~~n~i~-----~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~ 103 (285)
T 1ozn_A 29 GIPAASQRIFLHGNRIS-----HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG 103 (285)
T ss_dssp TCCTTCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT
T ss_pred CCCCCceEEEeeCCcCC-----ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC
Confidence 34568888988888775 34 44458888999999999988866 6778889999999999886 7777 667888
Q ss_pred CCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCC
Q 045321 210 ILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKL 287 (397)
Q Consensus 210 l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L 287 (397)
+++|++|++++|.+..+ |..+..+++|++|+++ ++....+|.. ++.+++|+.+++++|.+ ....+..+..+++|
T Consensus 104 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 104 LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRI---SSVPERAFRGLHSL 179 (285)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTC
T ss_pred CcCCCEEECCCCcCCEECHhHhhCCcCCCEEECC-CCcccccCHhHhccCCCccEEECCCCcc---cccCHHHhcCcccc
Confidence 89999999999877777 4558888999999998 8877776654 78889999999988866 23333457788888
Q ss_pred cEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccccc
Q 045321 288 ECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYL 347 (397)
Q Consensus 288 ~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~ 347 (397)
+.|+++++ .+..+.. ++.. +++|+.|++++|.+...+...++.+++|+.|++++|.+.
T Consensus 180 ~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQN-RVAHVHPHAFRD-LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred CEEECCCC-cccccCHhHccC-cccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence 88888874 3444422 5566 888899999988876655566888888999988776653
No 52
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.82 E-value=1.1e-19 Score=185.46 Aligned_cols=272 Identities=17% Similarity=0.066 Sum_probs=160.6
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccc-ccccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~ 189 (397)
..+++++.+..+......+. ..+++|++|.+.++... .+ +..|..+++|++|++++|.+..+| ..++++++
T Consensus 48 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 122 (680)
T 1ziw_A 48 YSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122 (680)
T ss_dssp GTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTT
T ss_pred CCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-----ccChhhhccCCCCCEEECCCCccCccChhHccccCC
Confidence 45677777764443333333 56777777777777654 34 333477777777777777777554 45777777
Q ss_pred CceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hh--ccccCcEEEecCCCCCCCCCc-------------
Q 045321 190 LKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IW--MMQKLMHLNFGSITLPAPPKN------------- 252 (397)
Q Consensus 190 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~--~L~~L~~L~l~~~~~~~~~p~------------- 252 (397)
|++|++++|.+... |..++++++|++|++++|.+..++.. +. .+++|++|+++ ++....+++
T Consensus 123 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~ 201 (680)
T 1ziw_A 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELS-SNQIKEFSPGCFHAIGRLFGLF 201 (680)
T ss_dssp CCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECT-TCCCCCBCTTGGGGSSEECEEE
T ss_pred CCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECC-CCcccccChhhhhhhhhhhhhh
Confidence 77777777776543 44566777777777777766655443 22 34566666666 554333221
Q ss_pred ---------------------------------------cccCCC--CCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321 253 ---------------------------------------YSSSLK--NLIFISALNPNLSCYHSGVSNSLLGLHKLECLK 291 (397)
Q Consensus 253 ---------------------------------------~i~~l~--~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~ 291 (397)
.++.++ +|+.+++++|.+ ....+..++.+++|+.|+
T Consensus 202 l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~ 278 (680)
T 1ziw_A 202 LNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL---NVVGNDSFAWLPQLEYFF 278 (680)
T ss_dssp CTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC---CEECTTTTTTCTTCCEEE
T ss_pred ccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc---CccCcccccCcccccEee
Confidence 222222 255555555543 223345566677777777
Q ss_pred eecC-------------CCeeEEEe--------------------ccCCCCCCceEEEEecccCCCCCccccccCcCCce
Q 045321 292 LVNE-------------SKLSRVVL--------------------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV 338 (397)
Q Consensus 292 l~~~-------------~~L~~L~l--------------------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 338 (397)
++++ ++|+.+.+ .+.. +++|++|++++|.+.......++.+++|++
T Consensus 279 L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 357 (680)
T 1ziw_A 279 LEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW-LKCLEHLNMEDNDIPGIKSNMFTGLINLKY 357 (680)
T ss_dssp CCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT-CTTCCEEECCSCCBCCCCTTTTTTCTTCCE
T ss_pred CCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc-CCCCCEEECCCCccCCCChhHhccccCCcE
Confidence 7653 35555544 2334 788899999988887666667888888888
Q ss_pred EEEecccccCceeEE--------------------------eCCCCCCCCCEEEEecCCCcCcEE-ECCCcccccccccc
Q 045321 339 LKLKQNSYLGRKLAC--------------------------VGSSSFPKLTVLHLKSMYWQDEWT-MGAGAMPKLESLIV 391 (397)
Q Consensus 339 L~L~~~~~~~~~~~~--------------------------~~~~~~~~L~~L~l~~~~~l~~~~-~~~~~~p~L~~L~i 391 (397)
|++++|......++. .....+++|+.|+++++.-...++ .....+++|+.|++
T Consensus 358 L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L 437 (680)
T 1ziw_A 358 LSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL 437 (680)
T ss_dssp EECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC
T ss_pred EECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec
Confidence 888665432222110 013345566666666653222222 22345667777776
Q ss_pred cccc
Q 045321 392 NPCA 395 (397)
Q Consensus 392 ~~C~ 395 (397)
++|.
T Consensus 438 s~n~ 441 (680)
T 1ziw_A 438 SYNK 441 (680)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 6653
No 53
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.82 E-value=1.1e-19 Score=183.52 Aligned_cols=129 Identities=16% Similarity=0.072 Sum_probs=102.8
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~ 189 (397)
+..+++|.+..+.....++. ..+++|++|.+.++... .+ +..|.++++|++|+|++|.++.+|. .++++.+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 56788998885555555444 78899999999988765 45 5556889999999999999888874 5788999
Q ss_pred CceEecCCCCCcccCc-cccCCCCCcEEecCCccccc--chhhhhccccCcEEEecCCCCCC
Q 045321 190 LKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDH--SLEDIWMMQKLMHLNFGSITLPA 248 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~--lp~~~~~L~~L~~L~l~~~~~~~ 248 (397)
|++|++++|.++.+|+ .++++++|++|++++|.+.. +|..++.+++|++|+++ ++...
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~-~N~l~ 186 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS-SNKIQ 186 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC-SSCCC
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc-Ccccc
Confidence 9999999999888875 47889999999999996654 56778889999999988 66443
No 54
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.82 E-value=1.5e-19 Score=164.66 Aligned_cols=201 Identities=16% Similarity=0.094 Sum_probs=167.8
Q ss_pred CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcc-cccc-hhhhhccccCcE
Q 045321 163 KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSY-VDHS-LEDIWMMQKLMH 238 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~-l~~l-p~~~~~L~~L~~ 238 (397)
..+.|++|+++++.++.+| ..++++++|++|++++|.+..+ |..++.+++|++|++++|. +..+ |..+..+++|++
T Consensus 30 ~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 30 IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp CCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 3568999999999999776 5689999999999999999877 7789999999999999995 8888 567999999999
Q ss_pred EEecCCCCCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEE
Q 045321 239 LNFGSITLPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLS 316 (397)
Q Consensus 239 L~l~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~ 316 (397)
|+++ ++....+ |..++.+++|+.+++++|.+ ....+..++.+++|+.|+++++ .++.+.. ++.. +++|++|+
T Consensus 110 L~l~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~ 183 (285)
T 1ozn_A 110 LHLD-RCGLQELGPGLFRGLAALQYLYLQDNAL---QALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRG-LHSLDRLL 183 (285)
T ss_dssp EECT-TSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEE
T ss_pred EECC-CCcCCEECHhHhhCCcCCCEEECCCCcc---cccCHhHhccCCCccEEECCCC-cccccCHHHhcC-ccccCEEE
Confidence 9999 8876666 55688999999999999876 3334456889999999999984 5666643 4666 89999999
Q ss_pred EecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 317 LSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 317 L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
+++|.+....+..++.+++|+.|++++|.+..... .. ...+++|+.|++++++
T Consensus 184 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~-~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPT-EA-LAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCH-HH-HTTCTTCCEEECCSSC
T ss_pred CCCCcccccCHhHccCcccccEeeCCCCcCCcCCH-HH-cccCcccCEEeccCCC
Confidence 99999876667889999999999998877654321 22 5778999999999864
No 55
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.82 E-value=5.7e-20 Score=172.80 Aligned_cols=244 Identities=17% Similarity=0.165 Sum_probs=188.3
Q ss_pred CCCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCC
Q 045321 114 LANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLIL 189 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~ 189 (397)
...++++.+..+.....+.. ..+++|++|.+.++... .+ +..|..+++|++|++++|.++.+|.. ++++++
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 125 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-----TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTT
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccC-----ccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCcc
Confidence 45899999985555555553 88999999999999775 34 45459999999999999999988876 899999
Q ss_pred CceEecCCCCCcccCc--cccCCCCCcEEecCCc-ccccch-hhhhccccCcEEEecCCCCCCCC-CccccCCCCCcEEE
Q 045321 190 LKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSS-YVDHSL-EDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFIS 264 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~-~l~~lp-~~~~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~l~ 264 (397)
|++|++++|.+..+|. .++.+++|++|++++| .+..++ ..++.+++|++|+++ ++....+ |..++.+++|+.++
T Consensus 126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L~ 204 (353)
T 2z80_A 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID-ASDLQSYEPKSLKSIQNVSHLI 204 (353)
T ss_dssp CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE-ETTCCEECTTTTTTCSEEEEEE
T ss_pred CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC-CCCcCccCHHHHhccccCCeec
Confidence 9999999999999987 7889999999999999 688875 569999999999999 8875554 77899999999999
Q ss_pred cCCCeeeEEeccHHhh-hcCCCCCcEEEeecCCCeeEEEe----ccCCCCCCceEEEEecccCCCC----CccccccCcC
Q 045321 265 ALNPNLSCYHSGVSNS-LLGLHKLECLKLVNESKLSRVVL----SKYQFPLSLSHLSLSNTELMQD----PMPIMEKLPR 335 (397)
Q Consensus 265 l~~~~L~i~~~~~~~~-l~~l~~L~~L~l~~~~~L~~L~l----~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~ 335 (397)
+++|.+ ..++.. +..+++|+.|+++++ .++.+.. .... .+.++.++++.+.+... .+..++.+++
T Consensus 205 l~~n~l----~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~~~-~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~ 278 (353)
T 2z80_A 205 LHMKQH----ILLLEIFVDVTSSVECLELRDT-DLDTFHFSELSTGET-NSLIKKFTFRNVKITDESLFQVMKLLNQISG 278 (353)
T ss_dssp EECSCS----TTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------C-CCCCCEEEEESCBCCHHHHHHHHHHHHTCTT
T ss_pred CCCCcc----ccchhhhhhhcccccEEECCCC-ccccccccccccccc-cchhhccccccccccCcchhhhHHHHhcccC
Confidence 998865 444443 456899999999985 2221110 1122 66788888888876432 2345678899
Q ss_pred CceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 336 LQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 336 L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
|++|++++|... .++......+++|+.|++++++
T Consensus 279 L~~L~Ls~N~l~--~i~~~~~~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 279 LLELEFSRNQLK--SVPDGIFDRLTSLQKIWLHTNP 312 (353)
T ss_dssp CCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEECCCCCCC--ccCHHHHhcCCCCCEEEeeCCC
Confidence 999999777664 2333213678899999998875
No 56
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.82 E-value=1.2e-19 Score=189.56 Aligned_cols=248 Identities=18% Similarity=0.102 Sum_probs=178.0
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccc-cccccCCCCCceEecCCCCCccc-CccccCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQF-PLGLENLILLKHLKLNIPSLKCL-PSLLCTI 210 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~l-p~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l 210 (397)
-.+++++|.++++... .+ +..|.++++|++|++++|. +..+ |..++++++|++|++++|.+..+ |..++++
T Consensus 22 lp~~l~~LdLs~N~i~-----~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l 96 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIR-----TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGL 96 (844)
T ss_dssp SCTTCCEEEEESCCCC-----EECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSC
T ss_pred CCCCcCEEECCCCcCC-----ccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCC
Confidence 5689999999999876 33 4445999999999999996 4466 78899999999999999999866 8899999
Q ss_pred CCCcEEecCCccccc-chhh--hhccccCcEEEecCCCCCCCC--CccccCCCCCcEEEcCCCeeeEEeccHHhhh----
Q 045321 211 LNLQTLEMPSSYVDH-SLED--IWMMQKLMHLNFGSITLPAPP--KNYSSSLKNLIFISALNPNLSCYHSGVSNSL---- 281 (397)
Q Consensus 211 ~~L~~L~l~~~~l~~-lp~~--~~~L~~L~~L~l~~~~~~~~~--p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l---- 281 (397)
++|++|++++|.+.. +|.. ++++++|++|+++ +|....+ +..++++++|+++++++|.+. ...+..+
T Consensus 97 ~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~---~~~~~~l~~l~ 172 (844)
T 3j0a_A 97 FHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS-KNQIRSLYLHPSFGKLNSLKSIDFSSNQIF---LVCEHELEPLQ 172 (844)
T ss_dssp SSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE-SCCCCCCCCCGGGGTCSSCCEEEEESSCCC---CCCSGGGHHHH
T ss_pred cccCEeeCcCCCCCcccccCccccccCCCCEEECC-CCcccccccchhHhhCCCCCEEECCCCcCC---eeCHHHccccc
Confidence 999999999997765 5655 8999999999999 8876554 356999999999999988542 1111111
Q ss_pred ----------------------cCCC------CCcEEEeecC--------------------------------------
Q 045321 282 ----------------------LGLH------KLECLKLVNE-------------------------------------- 295 (397)
Q Consensus 282 ----------------------~~l~------~L~~L~l~~~-------------------------------------- 295 (397)
+.+. .|+.|+++++
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 1111 2666666543
Q ss_pred -------------CCeeEEEe-----------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCcee
Q 045321 296 -------------SKLSRVVL-----------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKL 351 (397)
Q Consensus 296 -------------~~L~~L~l-----------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~ 351 (397)
++|+.|.+ .+.. +++|+.|++++|.+....+..++.+++|++|+|++|......
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~- 330 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFET-LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY- 330 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSS-CCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCC-
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhc-CCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccC-
Confidence 23455544 2344 677777777777765555556777777777777666553321
Q ss_pred EEeCCCCCCCCCEEEEecCCCcCcEEE-CCCcccccccccccccc
Q 045321 352 ACVGSSSFPKLTVLHLKSMYWQDEWTM-GAGAMPKLESLIVNPCA 395 (397)
Q Consensus 352 ~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L~i~~C~ 395 (397)
+.. ...+++|+.|+++++ .+..++. ....+++|+.|++++|.
T Consensus 331 ~~~-~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 331 SSN-FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp SCS-CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred HHH-hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC
Confidence 222 566777888888775 3555532 24557888888887763
No 57
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.81 E-value=4.7e-20 Score=170.74 Aligned_cols=219 Identities=16% Similarity=0.062 Sum_probs=179.0
Q ss_pred hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccC
Q 045321 158 ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKL 236 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L 236 (397)
..++..+++|++|++++|.++.++ ..++++++|++|++++|.+...++ +..+++|++|++++|.+..+|. .++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence 566688889999999999998765 689999999999999999987765 9999999999999998888774 4899
Q ss_pred cEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-cc-CCCCCCceE
Q 045321 237 MHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SK-YQFPLSLSH 314 (397)
Q Consensus 237 ~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~-~~~l~~L~~ 314 (397)
++|+++ ++....++.. .+++|+.+++++|.+ ....+..+..+++|+.|++++ ..+..+.. .+ .. +++|++
T Consensus 102 ~~L~l~-~n~l~~~~~~--~~~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~-l~~L~~ 173 (317)
T 3o53_A 102 ETLHAA-NNNISRVSCS--RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAAS-SDTLEH 173 (317)
T ss_dssp CEEECC-SSCCSEEEEC--CCSSCEEEECCSSCC---CSGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGG-TTTCCE
T ss_pred CEEECC-CCccCCcCcc--ccCCCCEEECCCCCC---CCccchhhhccCCCCEEECCC-CCCCcccHHHHhhc-cCcCCE
Confidence 999999 8877766543 478999999999977 344455788899999999998 45666543 22 35 799999
Q ss_pred EEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccc
Q 045321 315 LSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPC 394 (397)
Q Consensus 315 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C 394 (397)
|++++|.+... +....+++|++|++++|... .++.. ...+++|+.|+++++ .+..++.....+++|+.|+++++
T Consensus 174 L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~--~l~~~-~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N 247 (317)
T 3o53_A 174 LNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLA--FMGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN 247 (317)
T ss_dssp EECTTSCCCEE--ECCCCCTTCCEEECCSSCCC--EECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred EECCCCcCccc--ccccccccCCEEECCCCcCC--cchhh-hcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCC
Confidence 99999987432 44556999999999877664 33334 567899999999997 57888777778899999999987
Q ss_pred c
Q 045321 395 A 395 (397)
Q Consensus 395 ~ 395 (397)
+
T Consensus 248 ~ 248 (317)
T 3o53_A 248 G 248 (317)
T ss_dssp C
T ss_pred C
Confidence 5
No 58
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=2e-20 Score=183.36 Aligned_cols=236 Identities=16% Similarity=0.083 Sum_probs=187.0
Q ss_pred CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
..+++|++|.+.++... .+ +..|..+++|++|++++|.+...++ ++.+++|++|++++|.+..+|.. ++
T Consensus 31 ~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~----~~ 100 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLS-----QISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG----PS 100 (487)
T ss_dssp TTGGGCCEEECCSSCCC-----CCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC----TT
T ss_pred ccCCCccEEEeeCCcCC-----CCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC----CC
Confidence 44568999999999876 34 5555999999999999999986655 89999999999999999887743 89
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCC-CccccCCCCCcEEEcCCCeeeEEeccHHhhhc-CCCCCcEE
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPP-KNYSSSLKNLIFISALNPNLSCYHSGVSNSLL-GLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~-~l~~L~~L 290 (397)
|++|++++|.+..+|.. .+++|+.|+++ +|....+ |..++.+++|+.+++++|.+ ....+..+. .+++|+.|
T Consensus 101 L~~L~L~~N~l~~~~~~--~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~l~~~l~~L~~L 174 (487)
T 3oja_A 101 IETLHAANNNISRVSCS--RGQGKKNIYLA-NNKITMLRDLDEGCRSRVQYLDLKLNEI---DTVNFAELAASSDTLEHL 174 (487)
T ss_dssp CCEEECCSSCCCCEEEC--CCSSCEEEECC-SSCCCSGGGBCGGGGSSEEEEECTTSCC---CEEEGGGGGGGTTTCCEE
T ss_pred cCEEECcCCcCCCCCcc--ccCCCCEEECC-CCCCCCCCchhhcCCCCCCEEECCCCCC---CCcChHHHhhhCCcccEE
Confidence 99999999988888763 57899999999 8876665 55789999999999999977 344566665 78999999
Q ss_pred EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321 291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 370 (397)
+++++ .+..+. .... +++|+.|++++|.+.. .++.++.+++|+.|++++|.+. .++.. ...+++|+.|+++++
T Consensus 175 ~Ls~N-~l~~~~-~~~~-l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~--~lp~~-l~~l~~L~~L~l~~N 247 (487)
T 3oja_A 175 NLQYN-FIYDVK-GQVV-FAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV--LIEKA-LRFSQNLEHFDLRGN 247 (487)
T ss_dssp ECTTS-CCCEEE-CCCC-CTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC--EECTT-CCCCTTCCEEECTTC
T ss_pred ecCCC-cccccc-cccc-CCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc--ccchh-hccCCCCCEEEcCCC
Confidence 99984 466654 2334 8999999999999854 4456889999999999877765 34444 678899999999997
Q ss_pred CCc-CcEEECCCccccccccccc
Q 045321 371 YWQ-DEWTMGAGAMPKLESLIVN 392 (397)
Q Consensus 371 ~~l-~~~~~~~~~~p~L~~L~i~ 392 (397)
+-. ..++.....++.|+.+.+.
T Consensus 248 ~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 248 GFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcchHHHHHhCCCCcEEecc
Confidence 643 1333344567778777764
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.80 E-value=1.1e-18 Score=174.87 Aligned_cols=218 Identities=15% Similarity=0.036 Sum_probs=124.9
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL 216 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 216 (397)
++|++|.+.++... .++. .+++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+.+|++|
T Consensus 61 ~~L~~L~L~~N~l~-----~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L 126 (622)
T 3g06_A 61 AHITTLVIPDNNLT-----SLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LPSGLCKL 126 (622)
T ss_dssp TTCSEEEECSCCCS-----CCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCCC-----CCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CCCCcCEE
Confidence 45555555555443 2221 34555555555555555554 44555555555555555554 34555555
Q ss_pred ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccc-----------------cCCCCCcEEEcCCCeeeEEeccHHh
Q 045321 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYS-----------------SSLKNLIFISALNPNLSCYHSGVSN 279 (397)
Q Consensus 217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i-----------------~~l~~L~~l~l~~~~L~i~~~~~~~ 279 (397)
++++|.+..+|.. +++|++|+++ +|....+|..+ ..+++|+.+++++|.+ ..++.
T Consensus 127 ~L~~N~l~~lp~~---l~~L~~L~Ls-~N~l~~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l----~~l~~ 198 (622)
T 3g06_A 127 WIFGNQLTSLPVL---PPGLQELSVS-DNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQL----ASLPT 198 (622)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECC-SSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC----SCCCC
T ss_pred ECCCCCCCcCCCC---CCCCCEEECc-CCcCCCcCCccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCC----CCCCC
Confidence 5555555555542 2455555555 55444444322 2234445555554433 11111
Q ss_pred hhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCC
Q 045321 280 SLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSF 359 (397)
Q Consensus 280 ~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 359 (397)
.+++|+.|+++++ .++. +...+++|+.|++++|.+... + ..+++|+.|++++|.+... + ..+
T Consensus 199 ---~~~~L~~L~L~~N-~l~~----l~~~~~~L~~L~Ls~N~L~~l--p--~~l~~L~~L~Ls~N~L~~l--p----~~~ 260 (622)
T 3g06_A 199 ---LPSELYKLWAYNN-RLTS----LPALPSGLKELIVSGNRLTSL--P--VLPSELKELMVSGNRLTSL--P----MLP 260 (622)
T ss_dssp ---CCTTCCEEECCSS-CCSS----CCCCCTTCCEEECCSSCCSCC--C--CCCTTCCEEECCSSCCSCC--C----CCC
T ss_pred ---ccchhhEEECcCC-cccc----cCCCCCCCCEEEccCCccCcC--C--CCCCcCcEEECCCCCCCcC--C----ccc
Confidence 1244455555442 2222 122267899999999987542 2 5578999999977766432 1 257
Q ss_pred CCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 360 PKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 360 ~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
++|+.|++++| .+..+|.....+++|+.|++.+++
T Consensus 261 ~~L~~L~Ls~N-~L~~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 261 SGLLSLSVYRN-QLTRLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp TTCCEEECCSS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred ccCcEEeCCCC-CCCcCCHHHhhccccCEEEecCCC
Confidence 88999999987 577787667788999999998875
No 60
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.80 E-value=6e-19 Score=159.92 Aligned_cols=200 Identities=20% Similarity=0.219 Sum_probs=154.9
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLP-SLLCTILN 212 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 212 (397)
.+++++|.+.++... .+ +..|..+++|++|++++|.+..++. .++++++|++|++++|.+..++ ..+.++++
T Consensus 27 ~~~l~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (276)
T 2z62_A 27 PFSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (276)
T ss_dssp CTTCCEEECTTCCCC-----EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred CCCccEEECCCCccc-----ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCcc
Confidence 457999999888775 34 4344889999999999999887654 7889999999999999988766 56889999
Q ss_pred CcEEecCCcccccchh-hhhccccCcEEEecCCCCCCC--CCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCc-
Q 045321 213 LQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAP--PKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLE- 288 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~--~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~- 288 (397)
|++|++++|.+..++. .++.+++|++|+++ ++.... +|..++.+++|+.+++++|.+ ....+..+..+++|+
T Consensus 102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~ 177 (276)
T 2z62_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSNKI---QSIYCTDLRVLHQMPL 177 (276)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSSCC---CEECGGGGHHHHTCTT
T ss_pred ccEEECCCCCccccCchhcccCCCCCEEECc-CCccceecCchhhccCCCCCEEECCCCCC---CcCCHHHhhhhhhccc
Confidence 9999999998888776 58899999999999 877554 688899999999999999866 232333444444444
Q ss_pred ---EEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccc
Q 045321 289 ---CLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY 346 (397)
Q Consensus 289 ---~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 346 (397)
.|++++ ..++.+...... ..+|++|++++|.+...+...++.+++|+.|++++|.+
T Consensus 178 l~l~L~ls~-n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~ 236 (276)
T 2z62_A 178 LNLSLDLSL-NPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 236 (276)
T ss_dssp CCEEEECCS-SCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCB
T ss_pred cceeeecCC-CcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcc
Confidence 788877 445555432223 55899999999988666666678899999999977765
No 61
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.80 E-value=5.1e-19 Score=163.07 Aligned_cols=194 Identities=18% Similarity=0.215 Sum_probs=139.3
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL 213 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 213 (397)
..+++|++|.+.++... .++.+ ..+++|++|++++|.+..++. ++.+++|++|++++|.+..+| .++.+++|
T Consensus 38 ~~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L 109 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSI 109 (308)
T ss_dssp HHHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTC
T ss_pred HHcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCC
Confidence 34567777777777654 33444 777888888888888877766 778888888888888877775 57788888
Q ss_pred cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321 214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV 293 (397)
Q Consensus 214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~ 293 (397)
++|++++|.+..+|. +..+++|++|+++ ++....++. ++.+++|+.+++++|.+ ..++. +..+++|+.|+++
T Consensus 110 ~~L~l~~n~l~~~~~-l~~l~~L~~L~l~-~n~l~~~~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 110 KTLDLTSTQITDVTP-LAGLSNLQVLYLD-LNQITNISP-LAGLTNLQYLSIGNAQV----SDLTP-LANLSKLTTLKAD 181 (308)
T ss_dssp CEEECTTSCCCCCGG-GTTCTTCCEEECC-SSCCCCCGG-GGGCTTCCEEECCSSCC----CCCGG-GTTCTTCCEEECC
T ss_pred CEEECCCCCCCCchh-hcCCCCCCEEECC-CCccCcCcc-ccCCCCccEEEccCCcC----CCChh-hcCCCCCCEEECC
Confidence 888888887777765 7788888888888 777666654 77788888888887755 23333 7777888888887
Q ss_pred cCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 294 NESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
++ .++.+. .+.. +++|++|++++|.+.... .+..+++|+.|++++|.+..
T Consensus 182 ~n-~l~~~~-~l~~-l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 182 DN-KISDIS-PLAS-LPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp SS-CCCCCG-GGGG-CTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CC-ccCcCh-hhcC-CCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 64 333322 2444 788888888888764332 47788888888887776544
No 62
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.79 E-value=5.9e-19 Score=162.65 Aligned_cols=191 Identities=18% Similarity=0.202 Sum_probs=161.2
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..+++|++|+++++.+..+| .+..+++|++|++++|.+..+|. +..+++|++|++++|.+..+| .+..+++|++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l 114 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL 114 (308)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred HHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence 45788999999999999887 68999999999999999999988 999999999999999888887 5899999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 321 (397)
+ +|....++. ++.+++|+.+++++|.+ ..++. +..+++|+.|+++++ .++.+. .+.. +++|+.|++++|.
T Consensus 115 ~-~n~l~~~~~-l~~l~~L~~L~l~~n~l----~~~~~-l~~l~~L~~L~l~~n-~l~~~~-~l~~-l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 115 T-STQITDVTP-LAGLSNLQVLYLDLNQI----TNISP-LAGLTNLQYLSIGNA-QVSDLT-PLAN-LSKLTTLKADDNK 184 (308)
T ss_dssp T-TSCCCCCGG-GTTCTTCCEEECCSSCC----CCCGG-GGGCTTCCEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred C-CCCCCCchh-hcCCCCCCEEECCCCcc----CcCcc-ccCCCCccEEEccCC-cCCCCh-hhcC-CCCCCEEECCCCc
Confidence 9 988777764 99999999999999866 33333 889999999999985 444433 2566 8999999999999
Q ss_pred CCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 322 LMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
+.. .+.+..+++|++|++++|...+.. . ...+++|+.|++++++
T Consensus 185 l~~--~~~l~~l~~L~~L~L~~N~l~~~~---~-l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 185 ISD--ISPLASLPNLIEVHLKNNQISDVS---P-LANTSNLFIVTLTNQT 228 (308)
T ss_dssp CCC--CGGGGGCTTCCEEECTTSCCCBCG---G-GTTCTTCCEEEEEEEE
T ss_pred cCc--ChhhcCCCCCCEEEccCCccCccc---c-ccCCCCCCEEEccCCe
Confidence 744 334889999999999877765443 2 5789999999999864
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.78 E-value=3.9e-18 Score=165.48 Aligned_cols=119 Identities=15% Similarity=0.099 Sum_probs=69.5
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL 216 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 216 (397)
++|++|.+.++... .++++ ..++.|++|++++|.++.+|..+ .+|++|++++|.+..+| +++++++|++|
T Consensus 131 ~~L~~L~L~~n~l~-----~lp~~-~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLE-----KLPEL-QNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCS-----SCCCC-TTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCC-----CCccc-CCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 45555555555443 23332 55666666666666665555432 35666666666666655 46666666666
Q ss_pred ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCee
Q 045321 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L 270 (397)
++++|.+..+|... ++|++|+++ +|....+| .++.+++|+.+++++|.+
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~-~n~l~~lp-~~~~l~~L~~L~l~~N~l 249 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAG-NNILEELP-ELQNLPFLTTIYADNNLL 249 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECC-SSCCSSCC-CCTTCTTCCEEECCSSCC
T ss_pred ECCCCcCCcCCCCc---CcccEEECc-CCcCCccc-ccCCCCCCCEEECCCCcC
Confidence 66666555555422 366666666 66555665 366777777777776644
No 64
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.78 E-value=5.5e-19 Score=173.08 Aligned_cols=214 Identities=16% Similarity=0.064 Sum_probs=176.0
Q ss_pred CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 163 KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
.+++|++|++++|.+..++ ..++++++|++|++++|.+...++ ++.+++|++|++++|.+..+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3448999999999998664 689999999999999999987765 9999999999999998888875 389999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccC-CCCCCceEEEEec
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKY-QFPLSLSHLSLSN 319 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~-~~l~~L~~L~L~~ 319 (397)
+ +|....++.. .+++|+.+++++|.+ ....+..++.+++|+.|+++++ .+..... ++. . +++|+.|+|++
T Consensus 107 ~-~N~l~~~~~~--~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~-l~~L~~L~Ls~ 178 (487)
T 3oja_A 107 A-NNNISRVSCS--RGQGKKNIYLANNKI---TMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAAS-SDTLEHLNLQY 178 (487)
T ss_dssp C-SSCCCCEEEC--CCSSCEEEECCSSCC---CSGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGG-TTTCCEEECTT
T ss_pred c-CCcCCCCCcc--ccCCCCEEECCCCCC---CCCCchhhcCCCCCCEEECCCC-CCCCcChHHHhhh-CCcccEEecCC
Confidence 9 8887776653 578999999999977 4555678889999999999984 5555433 333 5 89999999999
Q ss_pred ccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 320 TELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 320 ~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
|.+.. .+....+++|+.|+|++|.+.+ ++.. ...+++|+.|+++++ .+..+|...+.+++|+.|++.+++
T Consensus 179 N~l~~--~~~~~~l~~L~~L~Ls~N~l~~--~~~~-~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~ 248 (487)
T 3oja_A 179 NFIYD--VKGQVVFAKLKTLDLSSNKLAF--MGPE-FQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG 248 (487)
T ss_dssp SCCCE--EECCCCCTTCCEEECCSSCCCE--ECGG-GGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC
T ss_pred Ccccc--ccccccCCCCCEEECCCCCCCC--CCHh-HcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC
Confidence 99743 3455679999999998877643 3334 678899999999996 577887777788999999999876
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.78 E-value=6.8e-20 Score=169.27 Aligned_cols=216 Identities=17% Similarity=0.135 Sum_probs=157.4
Q ss_pred eEEEEcCCCCcc--ccccccc-------CCCCCceEecCCCCCc-ccCccc--cCCCCCcEEecCCcccccchhhhhcc-
Q 045321 167 LRLLNLGYAVLD--QFPLGLE-------NLILLKHLKLNIPSLK-CLPSLL--CTILNLQTLEMPSSYVDHSLEDIWMM- 233 (397)
Q Consensus 167 Lr~L~l~~~~i~--~lp~~~~-------~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~l~~lp~~~~~L- 233 (397)
|++|+++++.+. .+|..+. ++.+|++|++++|.+. .+|..+ +.+++|++|++++|.+..+|..++.+
T Consensus 65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~ 144 (312)
T 1wwl_A 65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ 144 (312)
T ss_dssp HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence 777888888875 4666555 6888888888888876 677776 78888888888888777777777777
Q ss_pred ----ccCcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEecc--HHhhh--cCCCCCcEEEeecCCCeeEEEe-
Q 045321 234 ----QKLMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYHSG--VSNSL--LGLHKLECLKLVNESKLSRVVL- 303 (397)
Q Consensus 234 ----~~L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~--~~~~l--~~l~~L~~L~l~~~~~L~~L~l- 303 (397)
++|++|+++ ++....++ ..++.+++|+++++++|.+ ... .+..+ ..+++|+.|+++++ .++.+.-
T Consensus 145 ~~~~~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~ 219 (312)
T 1wwl_A 145 QWLKPGLKVLSIA-QAHSLNFSCEQVRVFPALSTLDLSDNPE---LGERGLISALCPLKFPTLQVLALRNA-GMETPSGV 219 (312)
T ss_dssp TTCCTTCCEEEEE-SCSCCCCCTTTCCCCSSCCEEECCSCTT---CHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHH
T ss_pred HhhcCCCcEEEee-CCCCccchHHHhccCCCCCEEECCCCCc---CcchHHHHHHHhccCCCCCEEECCCC-cCcchHHH
Confidence 788888888 77766665 6788888888888888754 222 34455 78888888888874 3332210
Q ss_pred ---ccCCCCCCceEEEEecccCCCCC-ccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEEC
Q 045321 304 ---SKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMG 379 (397)
Q Consensus 304 ---~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~ 379 (397)
.+.. +++|++|++++|.+.... .+.+..+++|++|++++|.+. .++.. . +++|+.|+++++ .+..++.
T Consensus 220 ~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~--~ip~~-~--~~~L~~L~Ls~N-~l~~~p~- 291 (312)
T 1wwl_A 220 CSALAAA-RVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK--QVPKG-L--PAKLSVLDLSYN-RLDRNPS- 291 (312)
T ss_dssp HHHHHHT-TCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS--SCCSS-C--CSEEEEEECCSS-CCCSCCC-
T ss_pred HHHHHhc-CCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC--hhhhh-c--cCCceEEECCCC-CCCCChh-
Confidence 2234 688999999999876544 355667889999999777765 33322 2 278999999986 4777755
Q ss_pred CCcccccccccccccc
Q 045321 380 AGAMPKLESLIVNPCA 395 (397)
Q Consensus 380 ~~~~p~L~~L~i~~C~ 395 (397)
...+|+|+.|++++.+
T Consensus 292 ~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 292 PDELPQVGNLSLKGNP 307 (312)
T ss_dssp TTTSCEEEEEECTTCT
T ss_pred HhhCCCCCEEeccCCC
Confidence 6678999999888754
No 66
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.6e-18 Score=158.34 Aligned_cols=198 Identities=18% Similarity=0.039 Sum_probs=139.0
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 212 (397)
..+++++++.+.++... .++. .-.+.+++|++++|.+..+ |..+.++++|++|++++|.+..+|.. +.+++
T Consensus 7 ~~l~~l~~l~~~~~~l~-----~ip~--~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-----ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV 78 (290)
T ss_dssp ECSTTCCEEECTTSCCS-----SCCS--CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred cccCCccEEECCCCCCC-----cCCC--CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence 45677888888776654 3321 1135788888888888755 45678888888888888888877664 77888
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEE
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLK 291 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~ 291 (397)
|++|++++|.+..+|..+..+++|++|+++ ++....+|+ .++.+++|+.+++++|.+ ....+..+..+++|+.|+
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~-~N~l~~l~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVS-FNRLTSLPLGALRGLGELQELYLKGNEL---KTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEECC-SSCCCCCCSSTTTTCTTCCEEECTTSCC---CCCCTTTTTTCTTCCEEE
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEECC-CCcCcccCHHHHcCCCCCCEEECCCCCC---CccChhhcccccCCCEEE
Confidence 888888888888888878888888888888 777777664 477888888888888765 233334456777777777
Q ss_pred eecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccc
Q 045321 292 LVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY 346 (397)
Q Consensus 292 l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~ 346 (397)
+++ ..++.++- .+.. +++|++|++++|.+. ..+..+..+++|+.|+|++|..
T Consensus 155 L~~-N~l~~l~~~~~~~-l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 155 LAN-NNLTELPAGLLNG-LENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CTT-SCCSCCCTTTTTT-CTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CCC-CcCCccCHHHhcC-cCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 776 34444432 2344 677777777777764 4445566667777777766554
No 67
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=6.9e-19 Score=159.26 Aligned_cols=203 Identities=19% Similarity=0.187 Sum_probs=113.6
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 212 (397)
..+++|+.|.+.++... .++.+ ..++.|++|++++|.+..++ .++++++|++|++++|.+..+|.. ++.+++
T Consensus 38 ~~l~~L~~L~l~~~~i~-----~~~~l-~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 110 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-----SVQGI-QYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTN 110 (272)
T ss_dssp HHHTTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred ccccceeeeeeCCCCcc-----ccccc-ccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcC
Confidence 44556666666665543 22333 55666666666666665543 556666666666666666655543 456666
Q ss_pred CcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEE
Q 045321 213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L 290 (397)
|++|++++|.+..+|.. ++.+++|++|+++ +|....+|+. ++.+++|+.+++++|.+ ....+..
T Consensus 111 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~---------- 176 (272)
T 3rfs_A 111 LKELVLVENQLQSLPDGVFDKLTNLTYLNLA-HNQLQSLPKGVFDKLTNLTELDLSYNQL---QSLPEGV---------- 176 (272)
T ss_dssp CCEEECTTSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTT----------
T ss_pred CCEEECCCCcCCccCHHHhccCCCCCEEECC-CCccCccCHHHhccCccCCEEECCCCCc---CccCHHH----------
Confidence 66666666655555544 5566666666666 5555555443 35566666666665533 1111111
Q ss_pred EeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321 291 KLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 291 ~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 370 (397)
+.. +++|++|++++|.+.......++.+++|+.|++++|.+ .+.+++|+.|.+..+
T Consensus 177 --------------~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~---------~~~~~~l~~l~~~~n 232 (272)
T 3rfs_A 177 --------------FDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW---------DCTCPGIRYLSEWIN 232 (272)
T ss_dssp --------------TTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB---------CCCTTTTHHHHHHHH
T ss_pred --------------hcC-CccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCc---------cccCcHHHHHHHHHH
Confidence 233 66666677777766554445566677777777755543 234556666665544
Q ss_pred CCcCcEEECCC
Q 045321 371 YWQDEWTMGAG 381 (397)
Q Consensus 371 ~~l~~~~~~~~ 381 (397)
.--..+|...+
T Consensus 233 ~~~g~ip~~~~ 243 (272)
T 3rfs_A 233 KHSGVVRNSAG 243 (272)
T ss_dssp HTGGGBBCTTS
T ss_pred hCCCcccCccc
Confidence 33333443333
No 68
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.77 E-value=3.3e-18 Score=154.59 Aligned_cols=195 Identities=23% Similarity=0.212 Sum_probs=120.9
Q ss_pred CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCccc-cCCCCCcE
Q 045321 138 YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSLL-CTILNLQT 215 (397)
Q Consensus 138 ~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 215 (397)
+.+++.+.+.... .++. .-.+.+++|+++++.+..+|. .++++++|++|++++|.+..+|..+ ..+++|++
T Consensus 17 ~~~~l~~~~~~l~-----~ip~--~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-----AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTTSCCS-----SCCS--CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCE
T ss_pred CCCEEEccCCCCC-----ccCC--CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCE
Confidence 3556666665543 2221 112457777787777776654 5777777888888777777776654 66777888
Q ss_pred EecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321 216 LEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV 293 (397)
Q Consensus 216 L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~ 293 (397)
|++++|.+..+|.. +..+++|++|+++ ++....+|.. ++.+++|+.+++++|.+ ....+..+..+++|+.|+++
T Consensus 90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l---~~~~~~~~~~l~~L~~L~L~ 165 (270)
T 2o6q_A 90 LWVTDNKLQALPIGVFDQLVNLAELRLD-RNQLKSLPPRVFDSLTKLTYLSLGYNEL---QSLPKGVFDKLTSLKELRLY 165 (270)
T ss_dssp EECCSSCCCCCCTTTTTTCSSCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECC
T ss_pred EECCCCcCCcCCHhHcccccCCCEEECC-CCccCeeCHHHhCcCcCCCEEECCCCcC---CccCHhHccCCcccceeEec
Confidence 88877777777654 5677778888777 6665555543 56777777777777755 22222335666666666666
Q ss_pred cCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEeccc
Q 045321 294 NESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 294 ~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
++ .++.+.. .+.. +++|++|++++|.+...+...+..+++|+.|++++|.
T Consensus 166 ~n-~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 166 NN-QLKRVPEGAFDK-LTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SS-CCSCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CC-cCcEeChhHhcc-CCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 53 3333321 2344 5666666666666544444445666666666665554
No 69
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.76 E-value=1.5e-18 Score=153.84 Aligned_cols=94 Identities=15% Similarity=0.063 Sum_probs=50.3
Q ss_pred eeEEEEcCCCCcccccc-cccCCCCCceEecCCCC-CcccCc-cccCCCCCcEEecCC-cccccchh-hhhccccCcEEE
Q 045321 166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPS-LKCLPS-LLCTILNLQTLEMPS-SYVDHSLE-DIWMMQKLMHLN 240 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~l~~lp~-~~~~L~~L~~L~ 240 (397)
.|++|+++++.++.+|. .++++++|++|++++|. ++.+|+ .+.++++|++|++++ +.+..+|. .+..+++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555555443 45555566666666554 555543 455555666666655 45555543 355555566666
Q ss_pred ecCCCCCCCCCccccCCCCCc
Q 045321 241 FGSITLPAPPKNYSSSLKNLI 261 (397)
Q Consensus 241 l~~~~~~~~~p~~i~~l~~L~ 261 (397)
++ ++....+|. ++.+++|+
T Consensus 112 l~-~n~l~~lp~-~~~l~~L~ 130 (239)
T 2xwt_C 112 IF-NTGLKMFPD-LTKVYSTD 130 (239)
T ss_dssp EE-EECCCSCCC-CTTCCBCC
T ss_pred CC-CCCCccccc-cccccccc
Confidence 65 554444443 44444443
No 70
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.76 E-value=2.4e-18 Score=156.01 Aligned_cols=198 Identities=18% Similarity=0.091 Sum_probs=153.7
Q ss_pred CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccch-hhhhccccCcEEEe
Q 045321 165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNF 241 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l 241 (397)
+.|++|++++|.++.++. .++++++|++|++++|.+..+|. .+..+++|++|++++|.+..++ ..+.++++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 469999999999997765 78999999999999999988765 6899999999999999888877 45899999999999
Q ss_pred cCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEec-cHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCce----E
Q 045321 242 GSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHS-GVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLS----H 314 (397)
Q Consensus 242 ~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~-~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~----~ 314 (397)
+ ++....++. .++.+++|+.+++++|.+ .. .++..+..+++|+.|+++++ .++.+.. .+.. +++|+ +
T Consensus 108 ~-~n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~l~l~ 181 (276)
T 2z62_A 108 V-ETNLASLENFPIGHLKTLKELNVAHNLI---QSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRV-LHQMPLLNLS 181 (276)
T ss_dssp T-TSCCCCSTTCCCTTCTTCCEEECCSSCC---CCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHH-HHTCTTCCEE
T ss_pred C-CCCccccCchhcccCCCCCEEECcCCcc---ceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhh-hhhcccccee
Confidence 9 887776665 689999999999999866 22 36788899999999999884 4555432 2222 33444 8
Q ss_pred EEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 315 LSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 315 L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
|++++|.+..... ......+|++|++++|..... +......+++|+.|++++++
T Consensus 182 L~ls~n~l~~~~~-~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 182 LDLSLNPMNFIQP-GAFKEIRLKELALDTNQLKSV--PDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EECCSSCCCEECT-TSSCSCCEEEEECCSSCCSCC--CTTTTTTCCSCCEEECCSSC
T ss_pred eecCCCcccccCc-cccCCCcccEEECCCCceeec--CHhHhcccccccEEEccCCc
Confidence 9999998754333 333445899999977776433 22214678899999999754
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.76 E-value=7.6e-18 Score=152.20 Aligned_cols=195 Identities=22% Similarity=0.158 Sum_probs=108.6
Q ss_pred eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321 167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI 244 (397)
Q Consensus 167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~ 244 (397)
.+.++++++.++.+|..+. .+|++|+++++.+..+|. .+.++++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus 18 ~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~-~ 94 (270)
T 2o6q_A 18 KNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-D 94 (270)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC-S
T ss_pred CCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC-C
Confidence 4556666666666665443 456666666666665553 456666666666666666666554 3556666666666 5
Q ss_pred CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321 245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL 322 (397)
Q Consensus 245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l 322 (397)
+....+|.. ++.+++|+.+++++|.+ ....+..+..+++|+.|+++++ .++.+.. .+.. +++|++|++++|.+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l---~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l 169 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQL---KSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDK-LTSLKELRLYNNQL 169 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCcc---CeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccC-CcccceeEecCCcC
Confidence 555555443 45566666666666544 2233344556666666666653 3333322 2344 56666666666665
Q ss_pred CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
.......+..+++|++|++++|..... +......+++|+.|++.+++
T Consensus 170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 170 KRVPEGAFDKLTELKTLKLDNNQLKRV--PEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCCSCC--CTTTTTTCTTCCEEECCSSC
T ss_pred cEeChhHhccCCCcCEEECCCCcCCcC--CHHHhccccCCCEEEecCCC
Confidence 444444456666666666655544321 11113445666666666543
No 72
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.76 E-value=1.8e-17 Score=160.85 Aligned_cols=222 Identities=20% Similarity=0.213 Sum_probs=152.9
Q ss_pred CCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321 115 ANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL 193 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L 193 (397)
.+++.+.+..+.... .+. ..+++|++|.+.++... .++. ....|++|++++|.++.+| .++++++|++|
T Consensus 131 ~~L~~L~L~~n~l~~-lp~~~~l~~L~~L~l~~N~l~-----~lp~---~~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEK-LPELQNSSFLKIIDVDNNSLK-----KLPD---LPPSLEFIAAGNNQLEELP-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSSCCSS-CCCCTTCTTCCEEECCSSCCS-----CCCC---CCTTCCEEECCSSCCSSCC-CCTTCTTCCEE
T ss_pred CCCCEEECcCCCCCC-CcccCCCCCCCEEECCCCcCc-----ccCC---CcccccEEECcCCcCCcCc-cccCCCCCCEE
Confidence 578888888444444 346 88999999999998765 2322 2358999999999998887 68899999999
Q ss_pred ecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEE
Q 045321 194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCY 273 (397)
Q Consensus 194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~ 273 (397)
++++|.+..+|... .+|++|++++|.+..+|. ++.+++|++|+++ ++....+|.. +++|+.+++++|.+
T Consensus 201 ~l~~N~l~~l~~~~---~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~-~N~l~~l~~~---~~~L~~L~l~~N~l--- 269 (454)
T 1jl5_A 201 YADNNSLKKLPDLP---LSLESIVAGNNILEELPE-LQNLPFLTTIYAD-NNLLKTLPDL---PPSLEALNVRDNYL--- 269 (454)
T ss_dssp ECCSSCCSSCCCCC---TTCCEEECCSSCCSSCCC-CTTCTTCCEEECC-SSCCSSCCSC---CTTCCEEECCSSCC---
T ss_pred ECCCCcCCcCCCCc---CcccEEECcCCcCCcccc-cCCCCCCCEEECC-CCcCCccccc---ccccCEEECCCCcc---
Confidence 99999988887643 588999999998888884 8889999999998 8777767653 36788888887754
Q ss_pred eccHHhhhcCCCCCcEEEeecC---------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCce
Q 045321 274 HSGVSNSLLGLHKLECLKLVNE---------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQV 338 (397)
Q Consensus 274 ~~~~~~~l~~l~~L~~L~l~~~---------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 338 (397)
..++.. .++|+.|+++++ ++|+.|.+ .+...+++|++|++++|.+.. .+. .+++|++
T Consensus 270 -~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~---~~~~L~~ 341 (454)
T 1jl5_A 270 -TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPA---LPPRLER 341 (454)
T ss_dssp -SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-ccc---cCCcCCE
Confidence 223321 356777777663 24555544 122213577777777776543 211 1467777
Q ss_pred EEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 339 LKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 339 L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
|++++|.... ++ . .+++|+.|++++++
T Consensus 342 L~L~~N~l~~--lp---~-~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 342 LIASFNHLAE--VP---E-LPQNLKQLHVEYNP 368 (454)
T ss_dssp EECCSSCCSC--CC---C-CCTTCCEEECCSSC
T ss_pred EECCCCcccc--cc---c-hhhhccEEECCCCC
Confidence 7776655432 11 1 45677777777653
No 73
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.75 E-value=9.9e-18 Score=169.27 Aligned_cols=127 Identities=17% Similarity=0.114 Sum_probs=111.7
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCc-cccCCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPS-LLCTILN 212 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~ 212 (397)
.++++.|.++++... .+ +..|.++++|++|+|++|.|+.+|+ +++++++|++|++++|+++.+|. .++++++
T Consensus 51 p~~~~~LdLs~N~i~-----~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~ 125 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLR-----HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 125 (635)
T ss_dssp CTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTT
T ss_pred CcCCCEEEeeCCCCC-----CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCC
Confidence 358999999999876 55 4555999999999999999998864 68999999999999999999986 4799999
Q ss_pred CcEEecCCcccccchhh-hhccccCcEEEecCCCCCC--CCCccccCCCCCcEEEcCCC
Q 045321 213 LQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPA--PPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~--~~p~~i~~l~~L~~l~l~~~ 268 (397)
|++|++++|.+..+|.. ++++++|++|+++ ++... .+|..++.+++|+++++++|
T Consensus 126 L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls-~N~l~~~~~~~~~~~l~~L~~L~L~~N 183 (635)
T 4g8a_A 126 LQKLVAVETNLASLENFPIGHLKTLKELNVA-HNLIQSFKLPEYFSNLTNLEHLDLSSN 183 (635)
T ss_dssp CCEEECTTSCCCCSTTCCCTTCTTCCEEECC-SSCCCCCCCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCCCChhhhhcCcccCeeccc-cCccccCCCchhhccchhhhhhcccCc
Confidence 99999999999999875 8999999999999 87644 46778899999999999887
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=1.3e-19 Score=169.01 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=137.3
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-c-ccccccCCCCCceEecCCCCCc-ccCccccCCCCC
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-Q-FPLGLENLILLKHLKLNIPSLK-CLPSLLCTILNL 213 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~-lp~~~~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L 213 (397)
++++.+.+.++.... ..+.+ ..+++|++|++++|.+. . +|..+..+++|++|++++|.+. ..|..++.+++|
T Consensus 70 ~~l~~L~l~~n~l~~----~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQ----PLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCEECS----CCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTC
T ss_pred ccceEEEcCCccccc----cchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCC
Confidence 677888777765542 22334 56788888888888876 2 6777788888888888888766 566777788888
Q ss_pred cEEecCCc-cccc--chhhhhccccCcEEEecCCC-CCCC--CCccccCCC-CCcEEEcCCCeeeEEeccHHhhhcCCCC
Q 045321 214 QTLEMPSS-YVDH--SLEDIWMMQKLMHLNFGSIT-LPAP--PKNYSSSLK-NLIFISALNPNLSCYHSGVSNSLLGLHK 286 (397)
Q Consensus 214 ~~L~l~~~-~l~~--lp~~~~~L~~L~~L~l~~~~-~~~~--~p~~i~~l~-~L~~l~l~~~~L~i~~~~~~~~l~~l~~ 286 (397)
++|++++| .+.. +|..+..+++|++|+++ +| .... ++..++.++ +|+.+++++|.+.+....++..+..+++
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~-~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~ 223 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLS-WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPN 223 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHHHCTTCCEEECC-CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTT
T ss_pred CEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC-CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCC
Confidence 88888888 6663 66667788888888888 77 4442 455677777 8888888877322212456666777888
Q ss_pred CcEEEeecCCCeeEEEe-ccCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecc
Q 045321 287 LECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQN 344 (397)
Q Consensus 287 L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~ 344 (397)
|+.|++++|..+..-.+ .+.. +++|++|++++|. +....+..++++++|+.|+++++
T Consensus 224 L~~L~l~~~~~l~~~~~~~l~~-l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 224 LVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CSEEECTTCTTCCGGGGGGGGG-CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCEEeCCCCCcCCHHHHHHHhC-CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 88888877653332111 3445 7788888888874 33333445677888888888554
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.74 E-value=1.4e-17 Score=152.01 Aligned_cols=196 Identities=17% Similarity=0.077 Sum_probs=138.9
Q ss_pred CCeEEEEEEeCccchhhccCCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCceE
Q 045321 115 ANVKRCFILEDLIEFIFLEQSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHL 193 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L 193 (397)
.+++.+.+..+.... ++..-.++++.|.+.++... .+ +..|..++.|++|++++|.++.++.. +.+++|++|
T Consensus 10 ~~l~~l~~~~~~l~~-ip~~~~~~l~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L 82 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTA-LPPDLPKDTTILHLSENLLY-----TFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTL 82 (290)
T ss_dssp TTCCEEECTTSCCSS-CCSCCCTTCCEEECTTSCCS-----EEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEE
T ss_pred CCccEEECCCCCCCc-CCCCCCCCCCEEEcCCCcCC-----ccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEE
Confidence 445556555222222 22223367888888888765 33 44458888888888888888877654 778888888
Q ss_pred ecCCCCCcccCccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCCeee
Q 045321 194 KLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNPNLS 271 (397)
Q Consensus 194 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~ 271 (397)
++++|.+..+|..+..+++|++|++++|.+..+|. .+..+++|++|+++ ++....+|.+ +..+++|+.+++++|.+
T Consensus 83 ~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l- 160 (290)
T 1p9a_G 83 DLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKLEKLSLANNNL- 160 (290)
T ss_dssp ECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECT-TSCCCCCCTTTTTTCTTCCEEECTTSCC-
T ss_pred ECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECC-CCCCCccChhhcccccCCCEEECCCCcC-
Confidence 88888888888888888888888888888887774 47888888888888 7777677665 46788888888888766
Q ss_pred EEeccHH-hhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321 272 CYHSGVS-NSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 272 i~~~~~~-~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 324 (397)
..++ ..+..+++|+.|++++ ..++.++-++.. .++|+.+++++|++..
T Consensus 161 ---~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~-~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 161 ---TELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFG-SHLLPFAFLHGNPWLC 209 (290)
T ss_dssp ---SCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTT-TCCCSEEECCSCCBCC
T ss_pred ---CccCHHHhcCcCCCCEEECCC-CcCCccChhhcc-cccCCeEEeCCCCccC
Confidence 3333 3456788888888877 345544434444 6678888888887643
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.74 E-value=6.8e-18 Score=152.68 Aligned_cols=202 Identities=15% Similarity=0.077 Sum_probs=156.2
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCc
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLK 191 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~ 191 (397)
...++.+.+. +........ ..+++|++|.+.++... .++.+ ..+++|++|++++|.++.+|.. ++++++|+
T Consensus 40 l~~L~~L~l~-~~~i~~~~~l~~l~~L~~L~l~~n~l~-----~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 40 LNSIDQIIAN-NSDIKSVQGIQYLPNVRYLALGGNKLH-----DISAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HTTCCEEECT-TSCCCCCTTGGGCTTCCEEECTTSCCC-----CCGGG-TTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccceeeeeeC-CCCcccccccccCCCCcEEECCCCCCC-----Cchhh-cCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 5677888777 433333445 78999999999999875 33455 8999999999999999977654 68999999
Q ss_pred eEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCC
Q 045321 192 HLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNP 268 (397)
Q Consensus 192 ~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~ 268 (397)
+|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+++ +|....+|+. ++.+++|+.+++++|
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECC-CCCcCccCHHHhcCCccCCEEECCCC
Confidence 999999999988765 68999999999999988888876 6899999999999 8887777765 688999999999998
Q ss_pred eeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCc
Q 045321 269 NLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLP 334 (397)
Q Consensus 269 ~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~ 334 (397)
.+ ....+..+..+++|+.|++++++ +.+. +++|+.|+++.|.+....+..++.++
T Consensus 192 ~l---~~~~~~~~~~l~~L~~L~l~~N~-------~~~~-~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 192 QL---KSVPDGVFDRLTSLQYIWLHDNP-------WDCT-CPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CC---SCCCTTTTTTCTTCCEEECCSSC-------BCCC-TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cC---CccCHHHHhCCcCCCEEEccCCC-------cccc-CcHHHHHHHHHHhCCCcccCcccccC
Confidence 76 33344456777777777777643 2333 66677777766665544555555443
No 77
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.74 E-value=8e-18 Score=149.18 Aligned_cols=196 Identities=13% Similarity=0.073 Sum_probs=138.7
Q ss_pred CCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCC-cccccc-cccCCCCCceEecCC-CCCcccCc-cccC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAV-LDQFPL-GLENLILLKHLKLNI-PSLKCLPS-LLCT 209 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~-i~~lp~-~~~~l~~L~~L~l~~-~~i~~lp~-~~~~ 209 (397)
-.++++.|.+.++... .+ +..|..+++|++|++++|. ++.+|. .++++++|++|++++ |.++.+|. .+..
T Consensus 29 ~~~~l~~L~l~~n~l~-----~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~ 103 (239)
T 2xwt_C 29 LPPSTQTLKLIETHLR-----TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKE 103 (239)
T ss_dssp CCTTCCEEEEESCCCS-----EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEEC
T ss_pred CCCcccEEEEeCCcce-----EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCC
Confidence 3458999999998875 44 4445899999999999997 887765 788999999999998 89998874 6789
Q ss_pred CCCCcEEecCCcccccchhhhhccccCc---EEEecCCC-CCCCCCcc-ccCCCCCc-EEEcCCCeeeEEeccHHhhhcC
Q 045321 210 ILNLQTLEMPSSYVDHSLEDIWMMQKLM---HLNFGSIT-LPAPPKNY-SSSLKNLI-FISALNPNLSCYHSGVSNSLLG 283 (397)
Q Consensus 210 l~~L~~L~l~~~~l~~lp~~~~~L~~L~---~L~l~~~~-~~~~~p~~-i~~l~~L~-~l~l~~~~L~i~~~~~~~~l~~ 283 (397)
+++|++|++++|.+..+|. ++.+++|+ +|+++ ++ ....+|.. ++.+++|+ .+++++|.+ ..++.....
T Consensus 104 l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~-~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l----~~i~~~~~~ 177 (239)
T 2xwt_C 104 LPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEIT-DNPYMTSIPVNAFQGLCNETLTLKLYNNGF----TSVQGYAFN 177 (239)
T ss_dssp CTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEE-SCTTCCEECTTTTTTTBSSEEEEECCSCCC----CEECTTTTT
T ss_pred CCCCCEEeCCCCCCccccc-cccccccccccEEECC-CCcchhhcCcccccchhcceeEEEcCCCCC----cccCHhhcC
Confidence 9999999999998888987 88888888 99999 87 77777654 78888898 888887754 122222111
Q ss_pred CCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc-CCCCCccccccC-cCCceEEEecccccCceeEEeCCCCCCC
Q 045321 284 LHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE-LMQDPMPIMEKL-PRLQVLKLKQNSYLGRKLACVGSSSFPK 361 (397)
Q Consensus 284 l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l-~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 361 (397)
.++|++|++++|+ +...+...++.+ ++|+.|++++|.+.... ...|++
T Consensus 178 -------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~-----~~~~~~ 227 (239)
T 2xwt_C 178 -------------------------GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALP-----SKGLEH 227 (239)
T ss_dssp -------------------------TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCC-----CTTCTT
T ss_pred -------------------------CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCC-----hhHhcc
Confidence 2345555555553 433333445555 66666666554443211 235666
Q ss_pred CCEEEEecCC
Q 045321 362 LTVLHLKSMY 371 (397)
Q Consensus 362 L~~L~l~~~~ 371 (397)
|+.|.+.++.
T Consensus 228 L~~L~l~~~~ 237 (239)
T 2xwt_C 228 LKELIARNTW 237 (239)
T ss_dssp CSEEECTTC-
T ss_pred CceeeccCcc
Confidence 6666666543
No 78
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.72 E-value=6.2e-18 Score=156.10 Aligned_cols=198 Identities=21% Similarity=0.149 Sum_probs=131.5
Q ss_pred CCCeeEEEEcCCCCcc-cccccc--cCCCCCceEecCCCCCcccCccccCC-----CCCcEEecCCcccccch-hhhhcc
Q 045321 163 KFKYLRLLNLGYAVLD-QFPLGL--ENLILLKHLKLNIPSLKCLPSLLCTI-----LNLQTLEMPSSYVDHSL-EDIWMM 233 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~i~~lp~~~~~l-----~~L~~L~l~~~~l~~lp-~~~~~L 233 (397)
.+++|++|++++|.++ .+|..+ +.+++|++|++++|.+..+|..++.+ ++|++|++++|.+..+| ..++.+
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 5777888888887776 566665 77778888888887777767766666 77888888877777766 557777
Q ss_pred ccCcEEEecCCCCCCC---CCccc--cCCCCCcEEEcCCCeeeEEeccHH-hhhcCCCCCcEEEeecCCCeeEEE-e-cc
Q 045321 234 QKLMHLNFGSITLPAP---PKNYS--SSLKNLIFISALNPNLSCYHSGVS-NSLLGLHKLECLKLVNESKLSRVV-L-SK 305 (397)
Q Consensus 234 ~~L~~L~l~~~~~~~~---~p~~i--~~l~~L~~l~l~~~~L~i~~~~~~-~~l~~l~~L~~L~l~~~~~L~~L~-l-~~ 305 (397)
++|++|+++ ++.... +|..+ +.+++|+.+++++|.+.- ...++ ..+..+++|+.|+++++ .++... . .+
T Consensus 173 ~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~ 249 (312)
T 1wwl_A 173 PALSTLDLS-DNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSC 249 (312)
T ss_dssp SSCCEEECC-SCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCC
T ss_pred CCCCEEECC-CCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhh
Confidence 888888887 665322 23344 677788888887775510 01223 23356778888888764 232211 1 22
Q ss_pred CCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 306 YQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 306 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
.. +++|++|++++|.+. ..+..+. ++|++|++++|.+.+. + . ...+++|+.|++++++
T Consensus 250 ~~-l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~--p-~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 250 DW-PSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN--P-S-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CC-CTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC--C-C-TTTSCEEEEEECTTCT
T ss_pred hh-cCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC--h-h-HhhCCCCCEEeccCCC
Confidence 33 678888888888875 3444444 7888888877776544 1 2 4677888888888754
No 79
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.72 E-value=5.3e-19 Score=164.85 Aligned_cols=221 Identities=16% Similarity=0.127 Sum_probs=173.9
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCC--CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc--cCccccCCCC
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKF--KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC--LPSLLCTILN 212 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l--~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~--lp~~~~~l~~ 212 (397)
..++.+.+.++... +..+..+ +.+++|+++++.+...+..+..+.+|++|++++|.+.. +|..+..+++
T Consensus 47 ~~~~~l~l~~~~~~-------~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLH-------PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCC-------HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCC-------HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCC
Confidence 45778888776554 3344666 88999999999998777778899999999999998763 8888999999
Q ss_pred CcEEecCCcccc-cchhhhhccccCcEEEecCCC-CCC--CCCccccCCCCCcEEEcCCC-eeeEEeccHHhhhcCCC-C
Q 045321 213 LQTLEMPSSYVD-HSLEDIWMMQKLMHLNFGSIT-LPA--PPKNYSSSLKNLIFISALNP-NLSCYHSGVSNSLLGLH-K 286 (397)
Q Consensus 213 L~~L~l~~~~l~-~lp~~~~~L~~L~~L~l~~~~-~~~--~~p~~i~~l~~L~~l~l~~~-~L~i~~~~~~~~l~~l~-~ 286 (397)
|++|++++|.+. ..|..++.+++|++|+++ +| ... .++..++.+++|+.+++++| .+. ...++..+..++ +
T Consensus 120 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~-~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~--~~~~~~~~~~l~~~ 196 (336)
T 2ast_B 120 LQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS-GCSGFSEFALQTLLSSCSRLDELNLSWCFDFT--EKHVQVAVAHVSET 196 (336)
T ss_dssp CSEEECTTCBCCHHHHHHHTTCTTCSEEECT-TCBSCCHHHHHHHHHHCTTCCEEECCCCTTCC--HHHHHHHHHHSCTT
T ss_pred CCEEeCcCcccCHHHHHHHhcCCCCCEEECC-CCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcC--hHHHHHHHHhcccC
Confidence 999999999666 577889999999999999 88 344 36666888999999999998 662 123677888999 9
Q ss_pred CcEEEeecCC-Cee--EEEeccCCCCCCceEEEEeccc-CCCCCccccccCcCCceEEEecccc-cCceeEEeCCCCCCC
Q 045321 287 LECLKLVNES-KLS--RVVLSKYQFPLSLSHLSLSNTE-LMQDPMPIMEKLPRLQVLKLKQNSY-LGRKLACVGSSSFPK 361 (397)
Q Consensus 287 L~~L~l~~~~-~L~--~L~l~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~~~~ 361 (397)
|++|++++|. .+. .+.-.+.. +++|++|++++|. +....+..++.+++|++|++++|.. ....+ .. ...+++
T Consensus 197 L~~L~l~~~~~~~~~~~l~~~~~~-~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-l~~~~~ 273 (336)
T 2ast_B 197 ITQLNLSGYRKNLQKSDLSTLVRR-CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL-LE-LGEIPT 273 (336)
T ss_dssp CCEEECCSCGGGSCHHHHHHHHHH-CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG-GG-GGGCTT
T ss_pred CCEEEeCCCcccCCHHHHHHHHhh-CCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH-HH-HhcCCC
Confidence 9999999874 332 11113445 8999999999998 6666778899999999999977642 22211 12 467999
Q ss_pred CCEEEEecC
Q 045321 362 LTVLHLKSM 370 (397)
Q Consensus 362 L~~L~l~~~ 370 (397)
|+.|++.+|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 999999998
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.71 E-value=1.6e-16 Score=159.30 Aligned_cols=218 Identities=18% Similarity=0.021 Sum_probs=160.5
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL 216 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 216 (397)
.++++|.+.++... .++.. -.++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|
T Consensus 40 ~~l~~L~ls~n~L~-----~lp~~--l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L 106 (622)
T 3g06_A 40 NGNAVLNVGESGLT-----TLPDC--LPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLEL 106 (622)
T ss_dssp HCCCEEECCSSCCS-----CCCSC--CCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEE
T ss_pred CCCcEEEecCCCcC-----ccChh--hCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEE
Confidence 45788888887765 44322 12789999999999999887 57899999999999999987 78999999
Q ss_pred ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC-
Q 045321 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE- 295 (397)
Q Consensus 217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~- 295 (397)
++++|.+..+|. .+++|+.|+++ +|....+|.. +++|+.+++++|.+ ..++. .+++|+.|+++++
T Consensus 107 ~Ls~N~l~~l~~---~l~~L~~L~L~-~N~l~~lp~~---l~~L~~L~Ls~N~l----~~l~~---~~~~L~~L~L~~N~ 172 (622)
T 3g06_A 107 SIFSNPLTHLPA---LPSGLCKLWIF-GNQLTSLPVL---PPGLQELSVSDNQL----ASLPA---LPSELCKLWAYNNQ 172 (622)
T ss_dssp EECSCCCCCCCC---CCTTCCEEECC-SSCCSCCCCC---CTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSSC
T ss_pred ECcCCcCCCCCC---CCCCcCEEECC-CCCCCcCCCC---CCCCCEEECcCCcC----CCcCC---ccCCCCEEECCCCC
Confidence 999999999987 67899999999 8888888875 48899999998865 22332 2456677766653
Q ss_pred --------CCeeEEEe------ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCC
Q 045321 296 --------SKLSRVVL------SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPK 361 (397)
Q Consensus 296 --------~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~ 361 (397)
++|+.|.+ .+...+++|+.|++++|.+... + ..+++|+.|++++|.+... + ..+++
T Consensus 173 l~~l~~~~~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~L~~l--p----~~l~~ 242 (622)
T 3g06_A 173 LTSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL-P---ALPSGLKELIVSGNRLTSL--P----VLPSE 242 (622)
T ss_dssp CSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSC-C---CCCTTCCEEECCSSCCSCC--C----CCCTT
T ss_pred CCCCcccCCCCcEEECCCCCCCCCCCccchhhEEECcCCccccc-C---CCCCCCCEEEccCCccCcC--C----CCCCc
Confidence 34455544 1111256777777777765321 1 1247889999977765432 2 45688
Q ss_pred CCEEEEecCCCcCcEEECCCcccccccccccccc
Q 045321 362 LTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 362 L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~ 395 (397)
|+.|+++++ .+..++. .+++|+.|++++|.
T Consensus 243 L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~ 272 (622)
T 3g06_A 243 LKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ 272 (622)
T ss_dssp CCEEECCSS-CCSCCCC---CCTTCCEEECCSSC
T ss_pred CcEEECCCC-CCCcCCc---ccccCcEEeCCCCC
Confidence 999999986 5777654 67889999988773
No 81
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.71 E-value=7.1e-19 Score=171.13 Aligned_cols=206 Identities=15% Similarity=0.069 Sum_probs=99.3
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCC----eeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCccc-
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK----YLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKCL- 203 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~----~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~l- 203 (397)
..+++|++|.+.++.... .....++..++ .|++|++++|.+. .+|..+..+++|++|++++|.+...
T Consensus 53 ~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~ 129 (461)
T 1z7x_W 53 RVNPALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG 129 (461)
T ss_dssp HTCTTCCEEECTTCCCHH---HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred HhCCCcCEEeCCCCcCCh---HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence 445566666666555431 01123333343 4666666666654 3455556666666666666655421
Q ss_pred Cccc-----cCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCCC-Ccccc-----CCCCCcEEEcCC
Q 045321 204 PSLL-----CTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAPP-KNYSS-----SLKNLIFISALN 267 (397)
Q Consensus 204 p~~~-----~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~~-p~~i~-----~l~~L~~l~l~~ 267 (397)
+..+ ...++|++|++++|.+.. ++..+..+++|++|+++ ++..... +..+. ..++|+.+++++
T Consensus 130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 208 (461)
T 1z7x_W 130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS-NNDINEAGVRVLCQGLKDSPCQLEALKLES 208 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECC-SSBCHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECc-CCCcchHHHHHHHHHHhcCCCCceEEEccC
Confidence 1111 123456666666664432 34445556666666666 5432211 11111 244666666666
Q ss_pred CeeeEE-eccHHhhhcCCCCCcEEEeecCCCeeEEEe------ccCCCCCCceEEEEecccCCCC----CccccccCcCC
Q 045321 268 PNLSCY-HSGVSNSLLGLHKLECLKLVNESKLSRVVL------SKYQFPLSLSHLSLSNTELMQD----PMPIMEKLPRL 336 (397)
Q Consensus 268 ~~L~i~-~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l------~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L 336 (397)
|.+.-. ...++..+..+++|+.|+++++. +....+ +... +++|++|++++|.+... ....+..+++|
T Consensus 209 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L 286 (461)
T 1z7x_W 209 CGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESL 286 (461)
T ss_dssp SCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTC
T ss_pred CCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcC-CCCceEEECcCCCCCHHHHHHHHHHHhhCCCc
Confidence 644100 01245566666777777776531 111000 1223 55666666666655332 12334445666
Q ss_pred ceEEEeccc
Q 045321 337 QVLKLKQNS 345 (397)
Q Consensus 337 ~~L~L~~~~ 345 (397)
++|++++|.
T Consensus 287 ~~L~Ls~n~ 295 (461)
T 1z7x_W 287 KELSLAGNE 295 (461)
T ss_dssp CEEECTTCC
T ss_pred ceEECCCCC
Confidence 666665444
No 82
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=6.8e-17 Score=147.52 Aligned_cols=170 Identities=21% Similarity=0.195 Sum_probs=97.2
Q ss_pred CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCc
Q 045321 135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQ 214 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 214 (397)
.+++|+.|.+.++... .++.+ ..+++|++|++++|.++.++. ++++++|++|++++|.+..+|. ++.+++|+
T Consensus 44 ~l~~L~~L~l~~~~i~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 115 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLK 115 (291)
T ss_dssp HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCC
T ss_pred hcCcccEEEccCCCcc-----cChhH-hcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCC
Confidence 4455666666665543 23333 666666667776666666555 6666666777766666666543 66666667
Q ss_pred EEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec
Q 045321 215 TLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN 294 (397)
Q Consensus 215 ~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~ 294 (397)
+|++++|.+..++ .+..+++|++|+++ +|....+ +.++.+++|+.+++++|.+ ..++. +..+++|+.|++++
T Consensus 116 ~L~L~~n~i~~~~-~l~~l~~L~~L~l~-~n~l~~~-~~l~~l~~L~~L~L~~N~l----~~~~~-l~~l~~L~~L~L~~ 187 (291)
T 1h6t_A 116 SLSLEHNGISDIN-GLVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQI----SDIVP-LAGLTKLQNLYLSK 187 (291)
T ss_dssp EEECTTSCCCCCG-GGGGCTTCCEEECC-SSCCCCC-GGGGGCTTCSEEECCSSCC----CCCGG-GTTCTTCCEEECCS
T ss_pred EEECCCCcCCCCh-hhcCCCCCCEEEcc-CCcCCcc-hhhccCCCCCEEEccCCcc----ccchh-hcCCCccCEEECCC
Confidence 7776666666653 36666666666666 6655544 4566666666666666644 22222 45555555555554
Q ss_pred CCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321 295 ESKLSRVVLSKYQFPLSLSHLSLSNTELM 323 (397)
Q Consensus 295 ~~~L~~L~l~~~~~l~~L~~L~L~~~~l~ 323 (397)
+ .++.++ .+.. +++|+.|++++|++.
T Consensus 188 N-~i~~l~-~l~~-l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 188 N-HISDLR-ALAG-LKNLDVLELFSQECL 213 (291)
T ss_dssp S-CCCBCG-GGTT-CTTCSEEEEEEEEEE
T ss_pred C-cCCCCh-hhcc-CCCCCEEECcCCccc
Confidence 2 222221 2333 555555555555543
No 83
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.1e-16 Score=146.05 Aligned_cols=173 Identities=21% Similarity=0.216 Sum_probs=146.0
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..+++|+.|+++++.+..++ .++.+++|++|++++|.+..+|. ++.+++|++|++++|.+..+|. ++.+++|++|++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L 119 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSL 119 (291)
T ss_dssp HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEEC
T ss_pred hhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEEC
Confidence 56788999999999999886 48899999999999999999887 9999999999999998888776 999999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 321 (397)
+ +|....+ +.++.+++|+.+++++|.+ ..+ ..+..+++|+.|+++++ .++.+. .+.. +++|++|++++|.
T Consensus 120 ~-~n~i~~~-~~l~~l~~L~~L~l~~n~l----~~~-~~l~~l~~L~~L~L~~N-~l~~~~-~l~~-l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 120 E-HNGISDI-NGLVHLPQLESLYLGNNKI----TDI-TVLSRLTKLDTLSLEDN-QISDIV-PLAG-LTKLQNLYLSKNH 189 (291)
T ss_dssp T-TSCCCCC-GGGGGCTTCCEEECCSSCC----CCC-GGGGGCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred C-CCcCCCC-hhhcCCCCCCEEEccCCcC----Ccc-hhhccCCCCCEEEccCC-ccccch-hhcC-CCccCEEECCCCc
Confidence 9 8877776 5789999999999999866 333 67889999999999985 344432 2566 8999999999998
Q ss_pred CCCCCccccccCcCCceEEEecccccCc
Q 045321 322 LMQDPMPIMEKLPRLQVLKLKQNSYLGR 349 (397)
Q Consensus 322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 349 (397)
+.. ++.+..+++|+.|++++|.....
T Consensus 190 i~~--l~~l~~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 190 ISD--LRALAGLKNLDVLELFSQECLNK 215 (291)
T ss_dssp CCB--CGGGTTCTTCSEEEEEEEEEECC
T ss_pred CCC--ChhhccCCCCCEEECcCCcccCC
Confidence 743 45688999999999988765443
No 84
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.69 E-value=4.7e-18 Score=170.62 Aligned_cols=61 Identities=20% Similarity=0.210 Sum_probs=30.7
Q ss_pred CcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCc--EEECCCcccccccccccccc
Q 045321 333 LPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDE--WTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 333 l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~~~~~~~p~L~~L~i~~C~ 395 (397)
+++|++|+|+++...+..++.. ..++++|++|++++|+ +.. ++.....+|+|+.|++++|+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred CccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcCCc
Confidence 4444444444333322222222 3456677777777765 332 12222356777777777764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=3.5e-16 Score=139.64 Aligned_cols=174 Identities=21% Similarity=0.165 Sum_probs=98.6
Q ss_pred eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321 167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI 244 (397)
Q Consensus 167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~ 244 (397)
.++++++++.++.+|..+. .++++|+++++.+..++. .++++++|++|++++|.+..++.. +..+++|++|+++ +
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-N 92 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT-T
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC-C
Confidence 4455666666665555444 356666666666554433 455566666666666655554433 5556666666666 5
Q ss_pred CCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321 245 TLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL 322 (397)
Q Consensus 245 ~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l 322 (397)
+....+|. .++.+++|+.+++++|.+ ....+..+..+++|+.|+++++ .++.+.- .+.. +++|++|++++|.+
T Consensus 93 n~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~-l~~L~~L~L~~N~l 167 (251)
T 3m19_A 93 NQLASLPLGVFDHLTQLDKLYLGGNQL---KSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDK-LTNLQTLSLSTNQL 167 (251)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCC
T ss_pred CcccccChhHhcccCCCCEEEcCCCcC---CCcChhHhccCCcccEEECcCC-cCCccCHHHcCc-CcCCCEEECCCCcC
Confidence 55444443 245566666666665544 1222223455556666665552 3333322 2444 67777777777777
Q ss_pred CCCCccccccCcCCceEEEecccccC
Q 045321 323 MQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
.......+..+++|+.|++++|.+..
T Consensus 168 ~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 168 QSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp SCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CccCHHHHhCCCCCCEEEeeCCceeC
Confidence 65555567777888888887666543
No 86
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.68 E-value=2.4e-18 Score=167.36 Aligned_cols=229 Identities=16% Similarity=0.076 Sum_probs=105.0
Q ss_pred CCeeEEEEcCCCCccc-----ccccccCCCCCceEecCCCCCccc-Ccccc-----CCCCCcEEecCCccccc-----ch
Q 045321 164 FKYLRLLNLGYAVLDQ-----FPLGLENLILLKHLKLNIPSLKCL-PSLLC-----TILNLQTLEMPSSYVDH-----SL 227 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~-----~l~~L~~L~l~~~~l~~-----lp 227 (397)
.+.|++|++++|.++. ++..+..+++|++|++++|.+... +..+. ..++|++|++++|.+.. +|
T Consensus 141 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 220 (461)
T 1z7x_W 141 QCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHH
T ss_pred CCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHH
Confidence 3345555555555441 233444445555555555544321 11111 23355555555554433 34
Q ss_pred hhhhccccCcEEEecCCCCCCCC-----Ccc-ccCCCCCcEEEcCCCeeeEE-eccHHhhhcCCCCCcEEEeecCCCeeE
Q 045321 228 EDIWMMQKLMHLNFGSITLPAPP-----KNY-SSSLKNLIFISALNPNLSCY-HSGVSNSLLGLHKLECLKLVNESKLSR 300 (397)
Q Consensus 228 ~~~~~L~~L~~L~l~~~~~~~~~-----p~~-i~~l~~L~~l~l~~~~L~i~-~~~~~~~l~~l~~L~~L~l~~~~~L~~ 300 (397)
..+..+++|++|+++ +|..... .+. ...+++|+.+++++|.+.-. ...++..+..+++|+.|+++++. +..
T Consensus 221 ~~l~~~~~L~~L~Ls-~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~ 298 (461)
T 1z7x_W 221 GIVASKASLRELALG-SNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE-LGD 298 (461)
T ss_dssp HHHHHCTTCCEEECC-SSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC-CHH
T ss_pred HHHHhCCCccEEecc-CCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC-Cch
Confidence 445555555555555 4432211 011 12355555555555533100 01144455555666666665531 100
Q ss_pred EEe-----ccCCCCCCceEEEEecccCCCCC----ccccccCcCCceEEEecccccCceeEEe--CC-CCCCCCCEEEEe
Q 045321 301 VVL-----SKYQFPLSLSHLSLSNTELMQDP----MPIMEKLPRLQVLKLKQNSYLGRKLACV--GS-SSFPKLTVLHLK 368 (397)
Q Consensus 301 L~l-----~~~~~l~~L~~L~L~~~~l~~~~----~~~l~~l~~L~~L~L~~~~~~~~~~~~~--~~-~~~~~L~~L~l~ 368 (397)
... .+....++|++|++++|.+.... +..+..+++|++|++++|...+...... +. ...++|++|+++
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 000 11110357777777777654332 2334556777777776655433221100 01 124577777777
Q ss_pred cCCCcC-----cEEECCCcccccccccccccc
Q 045321 369 SMYWQD-----EWTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 369 ~~~~l~-----~~~~~~~~~p~L~~L~i~~C~ 395 (397)
+|. +. .++.....+|+|++|++++|+
T Consensus 379 ~n~-i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCD-VSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSC-CCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCC-CChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 663 33 233223345667777666653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.67 E-value=3.6e-18 Score=162.46 Aligned_cols=234 Identities=15% Similarity=0.081 Sum_probs=126.9
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc----cccccc-------cCCCCCceEecCCCCCcc
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD----QFPLGL-------ENLILLKHLKLNIPSLKC 202 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~~~~i~~ 202 (397)
..+++|++|.+.++.........+...+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+..
T Consensus 29 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 108 (386)
T 2ca6_A 29 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP 108 (386)
T ss_dssp HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCH
Confidence 455667777777665542111122222356777777777776443 233333 566777777777776654
Q ss_pred -----cCccccCCCCCcEEecCCccccc-----chhhhhcc---------ccCcEEEecCCCCCC--CCC---ccccCCC
Q 045321 203 -----LPSLLCTILNLQTLEMPSSYVDH-----SLEDIWMM---------QKLMHLNFGSITLPA--PPK---NYSSSLK 258 (397)
Q Consensus 203 -----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~L---------~~L~~L~l~~~~~~~--~~p---~~i~~l~ 258 (397)
+|..+..+++|++|++++|.+.. ++..+..+ ++|++|+++ +|... .+| ..++.++
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG-RNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC-SSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC-CCCCCcHHHHHHHHHHHhCC
Confidence 56666677777777777775432 33334444 677777776 65432 233 3455666
Q ss_pred CCcEEEcCCCeeeEE-eccHHh-hhcCCCCCcEEEeecCCCe-----eEEEeccCCCCCCceEEEEecccCCCC----Cc
Q 045321 259 NLIFISALNPNLSCY-HSGVSN-SLLGLHKLECLKLVNESKL-----SRVVLSKYQFPLSLSHLSLSNTELMQD----PM 327 (397)
Q Consensus 259 ~L~~l~l~~~~L~i~-~~~~~~-~l~~l~~L~~L~l~~~~~L-----~~L~l~~~~~l~~L~~L~L~~~~l~~~----~~ 327 (397)
+|+.+++++|.+.-. ...+.. .+..+++|+.|+++++. + ..+.-++.. +++|++|+|++|.+... .+
T Consensus 188 ~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~-~~~L~~L~L~~n~i~~~~~~~l~ 265 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKS-WPNLRELGLNDCLLSARGAAAVV 265 (386)
T ss_dssp TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGG-CTTCCEEECTTCCCCHHHHHHHH
T ss_pred CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHcc-CCCcCEEECCCCCCchhhHHHHH
Confidence 777777776644100 001222 56666777777776642 2 111113444 66677777777765332 12
Q ss_pred ccc--ccCcCCceEEEecccccCc---eeEEeCC-CCCCCCCEEEEecCC
Q 045321 328 PIM--EKLPRLQVLKLKQNSYLGR---KLACVGS-SSFPKLTVLHLKSMY 371 (397)
Q Consensus 328 ~~l--~~l~~L~~L~L~~~~~~~~---~~~~~~~-~~~~~L~~L~l~~~~ 371 (397)
..+ +.+++|++|+|++|.+... .++.. . ..+++|+.|++++++
T Consensus 266 ~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~-l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 266 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTV-IDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHH-HHHHCTTCCEEECTTSB
T ss_pred HHHhhccCCCeEEEECcCCcCCHHHHHHHHHH-HHhcCCCceEEEccCCc
Confidence 233 2366777777765554431 11111 1 335677777776653
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.66 E-value=2.7e-18 Score=163.30 Aligned_cols=233 Identities=14% Similarity=0.059 Sum_probs=171.5
Q ss_pred chhHHhcCCCeeEEEEcCCCCccc-----ccccccCCCCCceEecCCCCCc----ccCccc-------cCCCCCcEEecC
Q 045321 156 DCENFCEKFKYLRLLNLGYAVLDQ-----FPLGLENLILLKHLKLNIPSLK----CLPSLL-------CTILNLQTLEMP 219 (397)
Q Consensus 156 ~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~l~ 219 (397)
.+...+..+++|++|++++|.+.. ++..+..+++|++|+++++.+. .+|..+ ..+++|++|+++
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 343333888999999999999873 4456788999999999997654 345444 789999999999
Q ss_pred Cccccc-----chhhhhccccCcEEEecCCCCCC-----CCCccccCC---------CCCcEEEcCCCeeeEEeccHH--
Q 045321 220 SSYVDH-----SLEDIWMMQKLMHLNFGSITLPA-----PPKNYSSSL---------KNLIFISALNPNLSCYHSGVS-- 278 (397)
Q Consensus 220 ~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~-----~~p~~i~~l---------~~L~~l~l~~~~L~i~~~~~~-- 278 (397)
+|.+.. +|..+..+++|++|+++ +|... .++..+..+ ++|+.+++++|.+. ...++
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~-~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~l 179 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLH-NNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE--NGSMKEW 179 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECC-SSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT--GGGHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECc-CCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC--cHHHHHH
Confidence 997766 88889999999999999 87643 222334444 89999999998662 13334
Q ss_pred -hhhcCCCCCcEEEeecCCCeeE-----EEe-ccCCCCCCceEEEEecccCC----CCCccccccCcCCceEEEeccccc
Q 045321 279 -NSLLGLHKLECLKLVNESKLSR-----VVL-SKYQFPLSLSHLSLSNTELM----QDPMPIMEKLPRLQVLKLKQNSYL 347 (397)
Q Consensus 279 -~~l~~l~~L~~L~l~~~~~L~~-----L~l-~~~~~l~~L~~L~L~~~~l~----~~~~~~l~~l~~L~~L~L~~~~~~ 347 (397)
..+..+++|+.|++++| .+.. +.- ++.. +++|++|+|++|.+. ...+..+..+++|++|+|++|.+.
T Consensus 180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~-~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhc-CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCc
Confidence 57788999999999985 3331 100 3445 899999999999874 233456788999999999877764
Q ss_pred Ccee---EEeCC--CCCCCCCEEEEecCCCcCc-----EEECC-Ccccccccccccccc
Q 045321 348 GRKL---ACVGS--SSFPKLTVLHLKSMYWQDE-----WTMGA-GAMPKLESLIVNPCA 395 (397)
Q Consensus 348 ~~~~---~~~~~--~~~~~L~~L~l~~~~~l~~-----~~~~~-~~~p~L~~L~i~~C~ 395 (397)
.... +.. . +.+++|+.|++++|. +.. ++... ..+|+|+.|++++|+
T Consensus 258 ~~~~~~l~~~-l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~ 314 (386)
T 2ca6_A 258 ARGAAAVVDA-FSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNR 314 (386)
T ss_dssp HHHHHHHHHH-HHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSB
T ss_pred hhhHHHHHHH-HhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCc
Confidence 4311 111 2 448999999999975 554 44333 457999999999885
No 89
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.66 E-value=2.6e-16 Score=157.37 Aligned_cols=179 Identities=20% Similarity=0.192 Sum_probs=115.2
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNL 213 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 213 (397)
..+++|+.|.+.++... .++.+ ..+++|+.|+|++|.+..+|+ ++.+++|++|++++|.+..+| .++.+++|
T Consensus 40 ~~L~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L 111 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIK-----SVQGI-QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKL 111 (605)
T ss_dssp HHHTTCCCCBCTTCCCC-----CCTTG-GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTC
T ss_pred hcCCCCCEEECcCCCCC-----CChHH-ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCC
Confidence 34556666666666554 33444 677777777777777776655 677777777777777777665 57777777
Q ss_pred cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321 214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV 293 (397)
Q Consensus 214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~ 293 (397)
++|++++|.+..+|. +..+++|+.|+++ +|....+ ..++.+++|+.|++++|.+ ..++. +..+++|+.|+++
T Consensus 112 ~~L~Ls~N~l~~l~~-l~~l~~L~~L~Ls-~N~l~~l-~~l~~l~~L~~L~Ls~N~l----~~~~~-l~~l~~L~~L~Ls 183 (605)
T 1m9s_A 112 KSLSLEHNGISDING-LVHLPQLESLYLG-NNKITDI-TVLSRLTKLDTLSLEDNQI----SDIVP-LAGLTKLQNLYLS 183 (605)
T ss_dssp CEEECTTSCCCCCGG-GGGCTTCSEEECC-SSCCCCC-GGGGSCTTCSEEECCSSCC----CCCGG-GTTCTTCCEEECC
T ss_pred CEEEecCCCCCCCcc-ccCCCccCEEECC-CCccCCc-hhhcccCCCCEEECcCCcC----CCchh-hccCCCCCEEECc
Confidence 777777776666643 6777777777777 6665555 4677777777777777655 22222 6666777777776
Q ss_pred cCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccc
Q 045321 294 NESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIME 331 (397)
Q Consensus 294 ~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~ 331 (397)
+| .+..++ .+.. +++|+.|+|++|.+...+...+.
T Consensus 184 ~N-~i~~l~-~l~~-l~~L~~L~L~~N~l~~~p~~~~~ 218 (605)
T 1m9s_A 184 KN-HISDLR-ALAG-LKNLDVLELFSQECLNKPINHQS 218 (605)
T ss_dssp SS-CCCBCG-GGTT-CTTCSEEECCSEEEECCCCCCCS
T ss_pred CC-CCCCCh-HHcc-CCCCCEEEccCCcCcCCcccccc
Confidence 63 333332 3455 67777777777766544443333
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.65 E-value=1.9e-16 Score=145.89 Aligned_cols=220 Identities=15% Similarity=0.093 Sum_probs=114.6
Q ss_pred CCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcc-cccccc--cCCCCCceEecCCCCCcc-cC----cccc
Q 045321 137 MYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLD-QFPLGL--ENLILLKHLKLNIPSLKC-LP----SLLC 208 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-~lp~~~--~~l~~L~~L~l~~~~i~~-lp----~~~~ 208 (397)
..++.+.+.+..........+..+ ..++.|++|++++|.+. ..|..+ +.+.+|++|++++|.+.. .| ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 345556665554432111112222 23455777888777766 455555 777778888887777663 22 2334
Q ss_pred CCCCCcEEecCCcccccch-hhhhccccCcEEEecCCCCCCC---CC--ccccCCCCCcEEEcCCCeeeEEeccHHh---
Q 045321 209 TILNLQTLEMPSSYVDHSL-EDIWMMQKLMHLNFGSITLPAP---PK--NYSSSLKNLIFISALNPNLSCYHSGVSN--- 279 (397)
Q Consensus 209 ~l~~L~~L~l~~~~l~~lp-~~~~~L~~L~~L~l~~~~~~~~---~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~~--- 279 (397)
.+++|++|++++|.+..+| ..++.+++|++|+++ ++.... ++ ..++.+++|+++++++|.+ ..++.
T Consensus 143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~~ 217 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLS-DNPGLGERGLMAALCPHKFPAIQNLALRNTGM----ETPTGVCA 217 (310)
T ss_dssp BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECC-SCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC----CCHHHHHH
T ss_pred hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECC-CCCCccchhhhHHHhhhcCCCCCEEECCCCCC----CchHHHHH
Confidence 5777777777777666655 346777777777777 654322 22 2235677777777777654 22222
Q ss_pred -hhcCCCCCcEEEeecCCCeeEE-EeccCCC--CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeC
Q 045321 280 -SLLGLHKLECLKLVNESKLSRV-VLSKYQF--PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVG 355 (397)
Q Consensus 280 -~l~~l~~L~~L~l~~~~~L~~L-~l~~~~~--l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~ 355 (397)
.++.+++|+.|+++++ .++.+ +-.+..+ +++|++|++++|.+. ..+..+. ++|++|+|++|...+.. .
T Consensus 218 ~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~--~-- 289 (310)
T 4glp_A 218 ALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAP--Q-- 289 (310)
T ss_dssp HHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCC--C--
T ss_pred HHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCc--h--
Confidence 1345555555555542 12221 0011110 245555555555543 2222222 45555555544443321 0
Q ss_pred CCCCCCCCEEEEecC
Q 045321 356 SSSFPKLTVLHLKSM 370 (397)
Q Consensus 356 ~~~~~~L~~L~l~~~ 370 (397)
...+++|+.|+++++
T Consensus 290 ~~~l~~L~~L~L~~N 304 (310)
T 4glp_A 290 PDELPEVDNLTLDGN 304 (310)
T ss_dssp TTSCCCCSCEECSST
T ss_pred hhhCCCccEEECcCC
Confidence 234455555555543
No 91
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.65 E-value=4.4e-16 Score=155.74 Aligned_cols=173 Identities=20% Similarity=0.214 Sum_probs=144.9
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..++.|+.|+++++.+..+| .++.+++|++|++++|.+..+|+ ++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 116 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSL 116 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEEC
T ss_pred hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEe
Confidence 56788999999999998886 58999999999999999998887 899999999999999888877 5899999999999
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 321 (397)
+ +|....+ +.++.+++|+.|++++|.+ ..+ ..+..+++|+.|++++| .+..+. .+.. +++|+.|+|++|.
T Consensus 117 s-~N~l~~l-~~l~~l~~L~~L~Ls~N~l----~~l-~~l~~l~~L~~L~Ls~N-~l~~~~-~l~~-l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 117 E-HNGISDI-NGLVHLPQLESLYLGNNKI----TDI-TVLSRLTKLDTLSLEDN-QISDIV-PLAG-LTKLQNLYLSKNH 186 (605)
T ss_dssp T-TSCCCCC-GGGGGCTTCSEEECCSSCC----CCC-GGGGSCTTCSEEECCSS-CCCCCG-GGTT-CTTCCEEECCSSC
T ss_pred c-CCCCCCC-ccccCCCccCEEECCCCcc----CCc-hhhcccCCCCEEECcCC-cCCCch-hhcc-CCCCCEEECcCCC
Confidence 9 8877766 4689999999999999876 233 67889999999999885 344332 2566 8999999999998
Q ss_pred CCCCCccccccCcCCceEEEecccccCc
Q 045321 322 LMQDPMPIMEKLPRLQVLKLKQNSYLGR 349 (397)
Q Consensus 322 l~~~~~~~l~~l~~L~~L~L~~~~~~~~ 349 (397)
+.. ++.+..+++|+.|+|++|.+...
T Consensus 187 i~~--l~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 187 ISD--LRALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CCB--CGGGTTCTTCSEEECCSEEEECC
T ss_pred CCC--ChHHccCCCCCEEEccCCcCcCC
Confidence 743 46789999999999987766443
No 92
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.65 E-value=4.1e-16 Score=133.90 Aligned_cols=152 Identities=13% Similarity=0.103 Sum_probs=100.6
Q ss_pred cCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCC-CCccccCCCCCcEE
Q 045321 185 ENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAP-PKNYSSSLKNLIFI 263 (397)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~-~p~~i~~l~~L~~l 263 (397)
+.+++|++|+++++.+..+| .+..+++|++|++++|.+..++ .+..+++|++|+++ ++.... .|..++.+++|+.+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~-~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIM-GKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEE-CTTCBGGGSCCCTTCTTCCEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeE-CCccCcccChhhcCCCCCCEE
Confidence 45566677777776666666 5666777777777777555554 46667777777777 665443 45667777777777
Q ss_pred EcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEec
Q 045321 264 SALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQ 343 (397)
Q Consensus 264 ~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~ 343 (397)
++++|.+ ....+..++.+++|+.|++++|..+..++ .+.. +++|++|++++|.+.. ++.+..+++|+.|++++
T Consensus 118 ~Ls~n~i---~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~-l~~L~~L~l~~n~i~~--~~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 118 DISHSAH---DDSILTKINTLPKVNSIDLSYNGAITDIM-PLKT-LPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190 (197)
T ss_dssp ECCSSBC---BGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGG-CSSCCEEECTTBCCCC--CTTGGGCSSCCEEEECB
T ss_pred EecCCcc---CcHhHHHHhhCCCCCEEEccCCCCccccH-hhcC-CCCCCEEECCCCCCcC--hHHhccCCCCCEEEeeC
Confidence 7777755 34456677777777777777654344443 3455 7788888888887643 33677888888888866
Q ss_pred ccc
Q 045321 344 NSY 346 (397)
Q Consensus 344 ~~~ 346 (397)
|.+
T Consensus 191 N~i 193 (197)
T 4ezg_A 191 QTI 193 (197)
T ss_dssp C--
T ss_pred ccc
Confidence 654
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.64 E-value=3.4e-17 Score=164.32 Aligned_cols=276 Identities=10% Similarity=0.030 Sum_probs=147.5
Q ss_pred CCCeEEEEEEeCccchhhcc--CC-CC-CeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----ccccc
Q 045321 114 LANVKRCFILEDLIEFIFLE--QS-GM-YLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FPLGL 184 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~--~~-~~-~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~ 184 (397)
...+++|.+..+...+.... .. ++ +|++|.+.++.... ...+..+...+++|++|++++|.+.. ++...
T Consensus 111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 45677777774433222211 22 33 38888877765211 12334444677888888888887542 33344
Q ss_pred cCCCCCceEecCCCCCc-----ccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC-------------
Q 045321 185 ENLILLKHLKLNIPSLK-----CLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL------------- 246 (397)
Q Consensus 185 ~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~------------- 246 (397)
..+++|++|+++++.+. .++..+.++++|++|++++|.+..+|..+..+++|++|+++ .+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG-SLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC-BCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc-ccccccchHHHHHHhh
Confidence 56778888888877764 34555567788888888888777777777777788887775 321
Q ss_pred --------------CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeec-------------CCCee
Q 045321 247 --------------PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVN-------------ESKLS 299 (397)
Q Consensus 247 --------------~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~-------------~~~L~ 299 (397)
...+|..+..+++|+.+++++|.+ ....+...+..+++|+.|++.. +++|+
T Consensus 268 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l--~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL--ETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC--CHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred ccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC--CHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 222333344455666666665532 1122333455666666666642 24555
Q ss_pred EEEecc-----------CC-----------CCCCceEEEEecccCCCCCcccccc-CcCCceEEEec----ccccCc---
Q 045321 300 RVVLSK-----------YQ-----------FPLSLSHLSLSNTELMQDPMPIMEK-LPRLQVLKLKQ----NSYLGR--- 349 (397)
Q Consensus 300 ~L~l~~-----------~~-----------~l~~L~~L~L~~~~l~~~~~~~l~~-l~~L~~L~L~~----~~~~~~--- 349 (397)
+|.+.- .. .+++|++|+++.+.+....+..++. +++|+.|++++ +...+.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 554431 00 0455555555544443333334433 55666666642 112111
Q ss_pred -eeEEeCCCCCCCCCEEEEecCCC-cCc--EEECCCcccccccccccccc
Q 045321 350 -KLACVGSSSFPKLTVLHLKSMYW-QDE--WTMGAGAMPKLESLIVNPCA 395 (397)
Q Consensus 350 -~~~~~~~~~~~~L~~L~l~~~~~-l~~--~~~~~~~~p~L~~L~i~~C~ 395 (397)
.+... ..++++|+.|++++|.+ +.. +......+|+|+.|++.+|.
T Consensus 426 ~~~~~~-~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~ 474 (592)
T 3ogk_B 426 NGVRSL-LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474 (592)
T ss_dssp HHHHHH-HHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC
T ss_pred HHHHHH-HHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC
Confidence 01111 22356666666655432 111 00111236777777777663
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.63 E-value=1.8e-16 Score=146.10 Aligned_cols=200 Identities=17% Similarity=0.087 Sum_probs=127.8
Q ss_pred CCCCeeEEEEeCCCCccccccchhHHh--cCCCeeEEEEcCCCCccc-cc----ccccCCCCCceEecCCCCCcccC-cc
Q 045321 135 SGMYLQSFLNHSSESDHLALIDCENFC--EKFKYLRLLNLGYAVLDQ-FP----LGLENLILLKHLKLNIPSLKCLP-SL 206 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~--~~l~~Lr~L~l~~~~i~~-lp----~~~~~l~~L~~L~l~~~~i~~lp-~~ 206 (397)
..++|+.|.+.++.... ..+..+ ..++.|++|++++|.+.. .| ..+..+++|++|++++|.+..+| ..
T Consensus 89 ~~~~L~~L~l~~n~l~~----~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~ 164 (310)
T 4glp_A 89 AYSRLKELTLEDLKITG----TMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQ 164 (310)
T ss_dssp HHSCCCEEEEESCCCBS----CCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTS
T ss_pred ccCceeEEEeeCCEecc----chhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHH
Confidence 34557777777776542 222222 567777777777777663 12 23446777777777777776554 45
Q ss_pred ccCCCCCcEEecCCccccc---chhh--hhccccCcEEEecCCCCCCCCCcc----ccCCCCCcEEEcCCCeeeEEeccH
Q 045321 207 LCTILNLQTLEMPSSYVDH---SLED--IWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALNPNLSCYHSGV 277 (397)
Q Consensus 207 ~~~l~~L~~L~l~~~~l~~---lp~~--~~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~l~l~~~~L~i~~~~~ 277 (397)
++.+++|++|++++|.+.. ++.. ++.+++|++|+++ +|....++.. ++.+++|+++++++|.+ ....
T Consensus 165 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l---~~~~ 240 (310)
T 4glp_A 165 VRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR-NTGMETPTGVCAALAAAGVQPHSLDLSHNSL---RATV 240 (310)
T ss_dssp CCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC-SSCCCCHHHHHHHHHHHTCCCSSEECTTSCC---CCCC
T ss_pred hccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECC-CCCCCchHHHHHHHHhcCCCCCEEECCCCCC---Cccc
Confidence 6677777777777775433 3322 3567777777777 6666555442 35667777777777765 2333
Q ss_pred HhhhcCC---CCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 278 SNSLLGL---HKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 278 ~~~l~~l---~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
|..+..+ ++|+.|+++++ .++.++- .- +++|++|++++|.+... +.+..+++|+.|++++|.+..
T Consensus 241 p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~--~~-~~~L~~L~Ls~N~l~~~--~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 241 NPSAPRCMWSSALNSLNLSFA-GLEQVPK--GL-PAKLRVLDLSSNRLNRA--PQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CSCCSSCCCCTTCCCEECCSS-CCCSCCS--CC-CSCCSCEECCSCCCCSC--CCTTSCCCCSCEECSSTTTSC
T ss_pred hhhHHhccCcCcCCEEECCCC-CCCchhh--hh-cCCCCEEECCCCcCCCC--chhhhCCCccEEECcCCCCCC
Confidence 4445554 57777777763 3443321 12 57999999999987533 347888999999998887654
No 95
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.63 E-value=5e-17 Score=163.12 Aligned_cols=127 Identities=15% Similarity=0.112 Sum_probs=83.9
Q ss_pred CCCeEEEEEEeCccchhhcc---CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----cccccc
Q 045321 114 LANVKRCFILEDLIEFIFLE---QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FPLGLE 185 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~---~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp~~~~ 185 (397)
..+++++.+..+...+.... ..+++|++|.+.++.... ...++.++..+++|++|++++|.++. ++....
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhh
Confidence 45788888885443332222 368899999998874321 11245665688999999999888652 333334
Q ss_pred CCCCCceEecCCCC--Cc--ccCccccCCCCCcEEecCCc-ccccchhhhhccccCcEEEec
Q 045321 186 NLILLKHLKLNIPS--LK--CLPSLLCTILNLQTLEMPSS-YVDHSLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 186 ~l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~l~~~-~l~~lp~~~~~L~~L~~L~l~ 242 (397)
.+++|++|+++++. +. .++.-+..+++|++|++++| .+..+|..+.++++|++|+++
T Consensus 182 ~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccc
Confidence 67789999988875 21 23333455788888888888 666677667777777777644
No 96
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.62 E-value=2e-16 Score=149.12 Aligned_cols=234 Identities=14% Similarity=0.083 Sum_probs=128.6
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCC-eeEEEEcCCCCcccc-cccccCC-----CCCceEecCCCCCcccCcc
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFK-YLRLLNLGYAVLDQF-PLGLENL-----ILLKHLKLNIPSLKCLPSL 206 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~-~Lr~L~l~~~~i~~l-p~~~~~l-----~~L~~L~l~~~~i~~lp~~ 206 (397)
...++|++|.+.++.........+...+..++ .|++|++++|.+... +..+..+ .+|++|++++|.+...+..
T Consensus 19 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~ 98 (362)
T 3goz_A 19 SIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSD 98 (362)
T ss_dssp TSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHH
T ss_pred hCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHH
Confidence 44555777777777765322222323346676 777888887777633 4444443 7777888877777644322
Q ss_pred -----ccCC-CCCcEEecCCcccccchh-h----hhcc-ccCcEEEecCCCCCC-----CCCccccCCC-CCcEEEcCCC
Q 045321 207 -----LCTI-LNLQTLEMPSSYVDHSLE-D----IWMM-QKLMHLNFGSITLPA-----PPKNYSSSLK-NLIFISALNP 268 (397)
Q Consensus 207 -----~~~l-~~L~~L~l~~~~l~~lp~-~----~~~L-~~L~~L~l~~~~~~~-----~~p~~i~~l~-~L~~l~l~~~ 268 (397)
+..+ ++|++|++++|.+...+. . +..+ ++|++|+++ +|... .++..+..+. +|+++++++|
T Consensus 99 ~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n 177 (362)
T 3goz_A 99 ELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR-GNDLGIKSSDELIQILAAIPANVNSLNLRGN 177 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT-TSCGGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred HHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc-CCcCCHHHHHHHHHHHhcCCccccEeeecCC
Confidence 3344 677788887776655543 2 2232 477777777 66433 2233344444 7777777777
Q ss_pred eeeEE-eccHHhhhcCC-CCCcEEEeecCCCeeE-----EEeccCCCCCCceEEEEecccCCCCCc----cccccCcCCc
Q 045321 269 NLSCY-HSGVSNSLLGL-HKLECLKLVNESKLSR-----VVLSKYQFPLSLSHLSLSNTELMQDPM----PIMEKLPRLQ 337 (397)
Q Consensus 269 ~L~i~-~~~~~~~l~~l-~~L~~L~l~~~~~L~~-----L~l~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~ 337 (397)
.+.-. ...+...+... ++|+.|+++++. +.. +.-.+....++|++|++++|.+..... ..+..+++|+
T Consensus 178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 178 NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 55100 11223344445 477777777642 222 110111103477777777777655443 2235567777
Q ss_pred eEEEecccccCce------eEEeCCCCCCCCCEEEEecC
Q 045321 338 VLKLKQNSYLGRK------LACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 338 ~L~L~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~ 370 (397)
.|++++|...... +... ...+++|+.|+++++
T Consensus 257 ~L~L~~n~l~~i~~~~~~~l~~~-~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 257 TVYLDYDIVKNMSKEQCKALGAA-FPNIQKIILVDKNGK 294 (362)
T ss_dssp EEEEEHHHHTTCCHHHHHHHHTT-STTCCEEEEECTTSC
T ss_pred EEEeccCCccccCHHHHHHHHHH-hccCCceEEEecCCC
Confidence 7777666522111 1111 344556666666654
No 97
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.62 E-value=4.7e-16 Score=139.76 Aligned_cols=147 Identities=18% Similarity=0.156 Sum_probs=86.2
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEe
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNF 241 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l 241 (397)
..+++|++|++++|.+..+| .++.+++|++|++++|.+..+|. ++.+++|++|++++|.+..+|.... ++|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCcccc--CcccEEEc
Confidence 55566677777777666665 56666777777777776666665 6667777777777776666655322 66777777
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEeccc
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~ 321 (397)
+ +|....++ .++.+++|+.+++++|.+ ..++ .+..+++|+.|+++++ .++.+ -.+.. +++|+.|++++|.
T Consensus 114 ~-~N~l~~~~-~l~~l~~L~~L~Ls~N~i----~~~~-~l~~l~~L~~L~L~~N-~i~~~-~~l~~-l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 114 D-NNELRDTD-SLIHLKNLEILSIRNNKL----KSIV-MLGFLSKLEVLDLHGN-EITNT-GGLTR-LKKVNWIDLTGQK 183 (263)
T ss_dssp C-SSCCSBSG-GGTTCTTCCEEECTTSCC----CBCG-GGGGCTTCCEEECTTS-CCCBC-TTSTT-CCCCCEEEEEEEE
T ss_pred c-CCccCCCh-hhcCcccccEEECCCCcC----CCCh-HHccCCCCCEEECCCC-cCcch-HHhcc-CCCCCEEeCCCCc
Confidence 6 66555543 466666777777666644 2222 4555555555555542 22222 12333 5555555555554
Q ss_pred C
Q 045321 322 L 322 (397)
Q Consensus 322 l 322 (397)
+
T Consensus 184 ~ 184 (263)
T 1xeu_A 184 C 184 (263)
T ss_dssp E
T ss_pred c
Confidence 4
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=4.9e-15 Score=132.17 Aligned_cols=154 Identities=18% Similarity=0.130 Sum_probs=69.5
Q ss_pred eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEec
Q 045321 166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFG 242 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 242 (397)
.++.|+++++.+..++ ..++++++|++|++++|.+..++. .+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 3444444444444332 234444444444444444443332 234444444444444444444322 3444444444444
Q ss_pred CCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecc
Q 045321 243 SITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNT 320 (397)
Q Consensus 243 ~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~ 320 (397)
++....+|.. ++.+++|+.+++++|.+ ....+..++.+++|+.|+++++ .++.+.- .+.. +++|+.|++++|
T Consensus 116 -~N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~-l~~L~~L~l~~N 189 (251)
T 3m19_A 116 -GNQLKSLPSGVFDRLTKLKELRLNTNQL---QSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDR-LGKLQTITLFGN 189 (251)
T ss_dssp -SSCCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTT-CTTCCEEECCSC
T ss_pred -CCcCCCcChhHhccCCcccEEECcCCcC---CccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhC-CCCCCEEEeeCC
Confidence 4444444333 24444444444444433 1111223444445555555442 2222211 2344 677788888888
Q ss_pred cCCCC
Q 045321 321 ELMQD 325 (397)
Q Consensus 321 ~l~~~ 325 (397)
++...
T Consensus 190 ~~~c~ 194 (251)
T 3m19_A 190 QFDCS 194 (251)
T ss_dssp CBCTT
T ss_pred ceeCC
Confidence 76443
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.5e-15 Score=130.03 Aligned_cols=159 Identities=16% Similarity=0.109 Sum_probs=93.3
Q ss_pred CeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321 165 KYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF 241 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 241 (397)
+.|++|+++++.++.+|.. ++++++|++|++++|.++.+|.. +..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 4566666666666655443 45666666666666666666543 35666666666666666666544 466666666666
Q ss_pred cCCCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecc
Q 045321 242 GSITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNT 320 (397)
Q Consensus 242 ~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~ 320 (397)
+ ++....+|+. ++.+++|+.+++++|.+ ....+..+..+++|+.|++++++ +.+. +++|++|+++.|
T Consensus 108 ~-~N~l~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~l~~L~~L~l~~N~-------~~~~-~~~l~~L~~~~n 175 (208)
T 2o6s_A 108 N-TNQLQSLPDGVFDKLTQLKDLRLYQNQL---KSVPDGVFDRLTSLQYIWLHDNP-------WDCT-CPGIRYLSEWIN 175 (208)
T ss_dssp C-SSCCCCCCTTTTTTCTTCCEEECCSSCC---SCCCTTTTTTCTTCCEEECCSCC-------BCCC-TTTTHHHHHHHH
T ss_pred C-CCcCcccCHhHhccCCcCCEEECCCCcc---ceeCHHHhccCCCccEEEecCCC-------eecC-CCCHHHHHHHHH
Confidence 6 6655555544 45666666666666644 22222234555566666655532 2333 666777777776
Q ss_pred cCCCCCccccccCcC
Q 045321 321 ELMQDPMPIMEKLPR 335 (397)
Q Consensus 321 ~l~~~~~~~l~~l~~ 335 (397)
.+....+..++.++.
T Consensus 176 ~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 176 KHSGVVRNSAGSVAP 190 (208)
T ss_dssp HCTTTBBCTTSSBCT
T ss_pred hCCceeeccCccccC
Confidence 665555555555543
No 100
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.60 E-value=5.2e-16 Score=158.87 Aligned_cols=165 Identities=13% Similarity=0.045 Sum_probs=107.8
Q ss_pred CCCeEEEEEEeCccchhhcc-CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCce
Q 045321 114 LANVKRCFILEDLIEFIFLE-QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKH 192 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~~-~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~ 192 (397)
...++++.+..+........ ....+|+.+.+.............+..|..++.|++|+|++|.+..+|..++++.+|++
T Consensus 172 ~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 172 TPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 44567777753443332222 34444444444332211100112255568999999999999999999999999999999
Q ss_pred EecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeE
Q 045321 193 LKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSC 272 (397)
Q Consensus 193 L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i 272 (397)
|+|++|.+..+|..++++++|++|+|++|.+..+|..++.|++|++|+++ +|.+..+|..++.+++|+.|++++|.+
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-~N~l~~lp~~~~~l~~L~~L~L~~N~l-- 328 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFF-DNMVTTLPWEFGNLCNLQFLGVEGNPL-- 328 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECC-SSCCCCCCSSTTSCTTCCCEECTTSCC--
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECC-CCCCCccChhhhcCCCccEEeCCCCcc--
Confidence 99999999999999999999999999999999999999999999999999 998889999999999999999999977
Q ss_pred EeccHHhhhc
Q 045321 273 YHSGVSNSLL 282 (397)
Q Consensus 273 ~~~~~~~~l~ 282 (397)
....+..+.
T Consensus 329 -~~~~p~~~~ 337 (727)
T 4b8c_D 329 -EKQFLKILT 337 (727)
T ss_dssp -CSHHHHHHH
T ss_pred -CCCChHHHh
Confidence 445555543
No 101
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.59 E-value=5.6e-15 Score=126.76 Aligned_cols=127 Identities=13% Similarity=0.079 Sum_probs=76.0
Q ss_pred CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCCC
Q 045321 135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILNL 213 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 213 (397)
.+++|+.|.+.++... .++.+ ..+++|++|++++|.++.++ .+..+++|++|++++|.+.. .|..++.+++|
T Consensus 42 ~l~~L~~L~l~~n~i~-----~l~~l-~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L 114 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-----DLTGI-EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114 (197)
T ss_dssp HHHTCCEEEEESSCCS-----CCTTG-GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTC
T ss_pred hcCCccEEeccCCCcc-----ChHHH-hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCC
Confidence 3455666666665543 23333 56666666666666555443 55666666666666666653 55666666666
Q ss_pred cEEecCCccccc-chhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcCCCee
Q 045321 214 QTLEMPSSYVDH-SLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 214 ~~L~l~~~~l~~-lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~~~~L 270 (397)
++|++++|.+.. .|..++.+++|++|+++ +|. ...+| .++.+++|+.+++++|.+
T Consensus 115 ~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~-~n~~i~~~~-~l~~l~~L~~L~l~~n~i 171 (197)
T 4ezg_A 115 TLLDISHSAHDDSILTKINTLPKVNSIDLS-YNGAITDIM-PLKTLPELKSLNIQFDGV 171 (197)
T ss_dssp CEEECCSSBCBGGGHHHHTTCSSCCEEECC-SCTBCCCCG-GGGGCSSCCEEECTTBCC
T ss_pred CEEEecCCccCcHhHHHHhhCCCCCEEEcc-CCCCccccH-hhcCCCCCCEEECCCCCC
Confidence 666666665553 45556666666666666 554 55554 566666666666666533
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.59 E-value=7.6e-15 Score=137.57 Aligned_cols=215 Identities=13% Similarity=0.138 Sum_probs=110.1
Q ss_pred CeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCc-ccCc-cccCCCCCcEEec-CCcccccchh-hhhccccCcEE
Q 045321 165 KYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLK-CLPS-LLCTILNLQTLEM-PSSYVDHSLE-DIWMMQKLMHL 239 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~L~l-~~~~l~~lp~-~~~~L~~L~~L 239 (397)
+++++|++++|.|+.+|. .+.++++|++|++++|.+. .+|. .+.++++|+++.. .++++..+|+ .+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 345556666666665553 3555666666666666542 3432 3445555554333 3335555533 35556666666
Q ss_pred EecCCCCCCCCCcc-ccCCCCCcEEEcCCC-eeeEEeccHH-hhhcCC-CCCcEEEeecCCCeeEEEeccCCCCCCceEE
Q 045321 240 NFGSITLPAPPKNY-SSSLKNLIFISALNP-NLSCYHSGVS-NSLLGL-HKLECLKLVNESKLSRVVLSKYQFPLSLSHL 315 (397)
Q Consensus 240 ~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~-~L~i~~~~~~-~~l~~l-~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L 315 (397)
+++ ++....+|+. .....++..+++.++ .+ ..++ ..+..+ ..++.|++++ ..++.+.-.... ..+|++|
T Consensus 110 ~l~-~n~l~~~~~~~~~~~~~l~~l~l~~~~~i----~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~-~~~L~~l 182 (350)
T 4ay9_X 110 LIS-NTGIKHLPDVHKIHSLQKVLLDIQDNINI----HTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFN-GTQLDEL 182 (350)
T ss_dssp EEE-EECCSSCCCCTTCCBSSCEEEEEESCTTC----CEECTTSSTTSBSSCEEEECCS-SCCCEECTTSST-TEEEEEE
T ss_pred ccc-ccccccCCchhhcccchhhhhhhcccccc----ccccccchhhcchhhhhhcccc-ccccCCChhhcc-ccchhHH
Confidence 665 5554444432 223334444444321 11 1111 122232 2455566654 345544322222 4566777
Q ss_pred EEec-ccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccc
Q 045321 316 SLSN-TELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVN 392 (397)
Q Consensus 316 ~L~~-~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~ 392 (397)
++.+ +.+...+...++.+++|++|++++|.+... + ...|.+|+.|.+.++.+++.+|. ...+++|+.+++.
T Consensus 183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l--p---~~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL--P---SYGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC--C---SSSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hhccCCcccCCCHHHhccCcccchhhcCCCCcCcc--C---hhhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 7764 344333344567777777777766654322 1 34566777777777777776653 4456677666654
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.59 E-value=5.6e-15 Score=127.87 Aligned_cols=146 Identities=20% Similarity=0.163 Sum_probs=105.5
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
+.++.+++.+..+|..+ ..+|++|+++++.++.+|.. ++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls-~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS-TN 86 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC-CC
Confidence 46788888888888665 45899999999999988765 67899999999999988888875 6889999999999 88
Q ss_pred CCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321 246 LPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 246 ~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 324 (397)
....+|.. ++.+++|+.+++++|.+ ....+..+.. +++|++|++++|.+..
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~-------------------------l~~L~~L~l~~N~l~~ 138 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQL---QSLPDGVFDK-------------------------LTQLKDLRLYQNQLKS 138 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTT-------------------------CTTCCEEECCSSCCSC
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcC---cccCHhHhcc-------------------------CCcCCEEECCCCccce
Confidence 87777765 58899999999988755 2222222344 4455555555555443
Q ss_pred CCccccccCcCCceEEEecc
Q 045321 325 DPMPIMEKLPRLQVLKLKQN 344 (397)
Q Consensus 325 ~~~~~l~~l~~L~~L~L~~~ 344 (397)
.....+..+++|+.|++++|
T Consensus 139 ~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 139 VPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCTTTTTTCTTCCEEECCSC
T ss_pred eCHHHhccCCCccEEEecCC
Confidence 33333555556666665444
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.58 E-value=5e-15 Score=133.04 Aligned_cols=164 Identities=19% Similarity=0.184 Sum_probs=77.8
Q ss_pred eEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCC
Q 045321 167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITL 246 (397)
Q Consensus 167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~ 246 (397)
+..++++++.++.++ .+..+.+|++|++++|.+..+| .++.+++|++|++++|.+..+|. ++.+++|++|+++ ++.
T Consensus 21 l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~-~N~ 96 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN-RNR 96 (263)
T ss_dssp HHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC-SSC
T ss_pred HHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC-CCc
Confidence 344444555554444 3444555555555555555554 34555555555555555555544 5555555555555 444
Q ss_pred CCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCCCC
Q 045321 247 PAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQDP 326 (397)
Q Consensus 247 ~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~~~ 326 (397)
...+|.... ++|+.+++++|.+ ..+ ..+..+++|+.|+++++ .++.++ .+.. +++|+.|++++|.+...
T Consensus 97 l~~l~~~~~--~~L~~L~L~~N~l----~~~-~~l~~l~~L~~L~Ls~N-~i~~~~-~l~~-l~~L~~L~L~~N~i~~~- 165 (263)
T 1xeu_A 97 LKNLNGIPS--ACLSRLFLDNNEL----RDT-DSLIHLKNLEILSIRNN-KLKSIV-MLGF-LSKLEVLDLHGNEITNT- 165 (263)
T ss_dssp CSCCTTCCC--SSCCEEECCSSCC----SBS-GGGTTCTTCCEEECTTS-CCCBCG-GGGG-CTTCCEEECTTSCCCBC-
T ss_pred cCCcCcccc--CcccEEEccCCcc----CCC-hhhcCcccccEEECCCC-cCCCCh-HHcc-CCCCCEEECCCCcCcch-
Confidence 444433222 5555555555533 111 23445555555555542 222222 2333 45555555555554222
Q ss_pred ccccccCcCCceEEEecccc
Q 045321 327 MPIMEKLPRLQVLKLKQNSY 346 (397)
Q Consensus 327 ~~~l~~l~~L~~L~L~~~~~ 346 (397)
..+..+++|+.|++++|..
T Consensus 166 -~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 166 -GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp -TTSTTCCCCCEEEEEEEEE
T ss_pred -HHhccCCCCCEEeCCCCcc
Confidence 3445555555555544443
No 105
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.57 E-value=2.4e-15 Score=140.97 Aligned_cols=219 Identities=13% Similarity=0.082 Sum_probs=159.3
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCccc-ccchhh-hhccccCcEEEecCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYV-DHSLED-IWMMQKLMHLNFGSI 244 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l-~~lp~~-~~~L~~L~~L~l~~~ 244 (397)
++++.+++.++++|..+ ..++++|++++|+|+.+|+ .+.++++|++|++++|.+ +.+|.. +.++++++.+....+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 56788888899999877 3689999999999999996 579999999999999965 557654 788998887554415
Q ss_pred CCCCCCC-ccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccC
Q 045321 245 TLPAPPK-NYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTEL 322 (397)
Q Consensus 245 ~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l 322 (397)
+....+| ..++.+++|+.+++++|.+ ....+..+....++..|++.++.++..+.- .+......++.|++++|.+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l---~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i 166 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGI---KHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI 166 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECC---SSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred CcccccCchhhhhcccccccccccccc---ccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence 5677775 4578999999999998765 222223344556778888888778887753 3333135789999999997
Q ss_pred CCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEECCCccccccccccccccC
Q 045321 323 MQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTMGAGAMPKLESLIVNPCAY 396 (397)
Q Consensus 323 ~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~p~L~~L~i~~C~~ 396 (397)
.. ..+.....++|++|.+.+++.... ++......+++|+.|+++++ .++.++. +.+.+|+.|.+.+|.+
T Consensus 167 ~~-i~~~~f~~~~L~~l~l~~~n~l~~-i~~~~f~~l~~L~~LdLs~N-~l~~lp~--~~~~~L~~L~~l~~~~ 235 (350)
T 4ay9_X 167 QE-IHNSAFNGTQLDELNLSDNNNLEE-LPNDVFHGASGPVILDISRT-RIHSLPS--YGLENLKKLRARSTYN 235 (350)
T ss_dssp CE-ECTTSSTTEEEEEEECTTCTTCCC-CCTTTTTTEECCSEEECTTS-CCCCCCS--SSCTTCCEEECTTCTT
T ss_pred cC-CChhhccccchhHHhhccCCcccC-CCHHHhccCcccchhhcCCC-CcCccCh--hhhccchHhhhccCCC
Confidence 43 334445668899999965443333 33222578899999999986 5887764 4467777777766654
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.57 E-value=2.3e-14 Score=125.18 Aligned_cols=147 Identities=14% Similarity=0.168 Sum_probs=95.9
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~ 245 (397)
+.++++++.++.+|..+. .+|+.|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|+++ ++
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls-~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY-GN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC-SS
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC-CC
Confidence 467777777777776654 577888888888777665 577778888888888877766 5567778888888887 77
Q ss_pred CCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321 246 LPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 246 ~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 324 (397)
....+|.. ++.+++|+.+++++|.+ ....+..+.. +++|++|+|++|.+..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l---~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKI---NCLRVDAFQD-------------------------LHNLNLLSLYDNKLQT 142 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCC---CCCCTTTTTT-------------------------CTTCCEEECCSSCCSC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCC---CEeCHHHcCC-------------------------CCCCCEEECCCCcCCE
Confidence 77777765 46677777777777654 1222223333 4455555555555544
Q ss_pred CCccccccCcCCceEEEeccc
Q 045321 325 DPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 325 ~~~~~l~~l~~L~~L~L~~~~ 345 (397)
.....+..+++|+.|+|++|.
T Consensus 143 ~~~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 143 IAKGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp CCTTTTTTCTTCCEEECCSSC
T ss_pred ECHHHHhCCCCCCEEEeCCCC
Confidence 444445555666666665443
No 107
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.56 E-value=1.3e-14 Score=143.84 Aligned_cols=177 Identities=16% Similarity=0.122 Sum_probs=105.7
Q ss_pred CeeEEEEeCCCCccccccchhH-HhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEE
Q 045321 138 YLQSFLNHSSESDHLALIDCEN-FCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTL 216 (397)
Q Consensus 138 ~Lr~L~~~~~~~~~~~~~~l~~-~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L 216 (397)
+++.|.+.++... .++. + +++|++|++++|.++.+| +.+++|++|++++|.++.+|. +++ +|++|
T Consensus 60 ~L~~L~Ls~n~L~-----~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L 125 (571)
T 3cvr_A 60 QFSELQLNRLNLS-----SLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHL 125 (571)
T ss_dssp TCSEEECCSSCCS-----CCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEE
T ss_pred CccEEEeCCCCCC-----ccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEE
Confidence 5666666665543 2321 2 255666677766666666 345666677776666666666 544 66777
Q ss_pred ecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCC
Q 045321 217 EMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNES 296 (397)
Q Consensus 217 ~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~ 296 (397)
++++|.+..+|. .+++|+.|+++ ++....+|. .+++|+.+++++|.+ ..++. +. ++|+.|+++++
T Consensus 126 ~Ls~N~l~~lp~---~l~~L~~L~Ls-~N~l~~lp~---~l~~L~~L~Ls~N~L----~~lp~-l~--~~L~~L~Ls~N- 190 (571)
T 3cvr_A 126 DVDNNQLTMLPE---LPALLEYINAD-NNQLTMLPE---LPTSLEVLSVRNNQL----TFLPE-LP--ESLEALDVSTN- 190 (571)
T ss_dssp ECCSSCCSCCCC---CCTTCCEEECC-SSCCSCCCC---CCTTCCEEECCSSCC----SCCCC-CC--TTCCEEECCSS-
T ss_pred ECCCCcCCCCCC---cCccccEEeCC-CCccCcCCC---cCCCcCEEECCCCCC----CCcch-hh--CCCCEEECcCC-
Confidence 776666666665 46666777766 665555554 456666666666654 22443 33 56666666653
Q ss_pred CeeEEEeccCCCCCCc-------eEEEEecccCCCCCccccccCcCCceEEEecccccC
Q 045321 297 KLSRVVLSKYQFPLSL-------SHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 297 ~L~~L~l~~~~~l~~L-------~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
.++.++- +..+| +.|++++|.+. ..+..+..+++|+.|+|++|.+.+
T Consensus 191 ~L~~lp~----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 191 LLESLPA----VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp CCSSCCC----CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred CCCchhh----HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 3333221 12244 88888888874 345556668888888887776543
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=1.7e-14 Score=142.98 Aligned_cols=176 Identities=20% Similarity=0.151 Sum_probs=138.2
Q ss_pred CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCC
Q 045321 165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSI 244 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 244 (397)
.++++|+++++.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.+..+|. +.+ +|++|+++ +
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls-~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD-N 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC-S
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC-C
Confidence 389999999999999998774 79999999999999999 568999999999999988998 665 99999999 8
Q ss_pred CCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCCC
Q 045321 245 TLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELMQ 324 (397)
Q Consensus 245 ~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~~ 324 (397)
+....+|. .+++|+.+++++|.+ ..++. .+++|+.|+++++ .++.++- +.++|+.|++++|.+..
T Consensus 130 N~l~~lp~---~l~~L~~L~Ls~N~l----~~lp~---~l~~L~~L~Ls~N-~L~~lp~----l~~~L~~L~Ls~N~L~~ 194 (571)
T 3cvr_A 130 NQLTMLPE---LPALLEYINADNNQL----TMLPE---LPTSLEVLSVRNN-QLTFLPE----LPESLEALDVSTNLLES 194 (571)
T ss_dssp SCCSCCCC---CCTTCCEEECCSSCC----SCCCC---CCTTCCEEECCSS-CCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred CcCCCCCC---cCccccEEeCCCCcc----CcCCC---cCCCcCEEECCCC-CCCCcch----hhCCCCEEECcCCCCCc
Confidence 88877887 689999999999876 33444 5678999999874 3444321 24789999999998753
Q ss_pred CCccccccCcCC-------ceEEEecccccCceeEEeCCCCCCCCCEEEEecCC
Q 045321 325 DPMPIMEKLPRL-------QVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMY 371 (397)
Q Consensus 325 ~~~~~l~~l~~L-------~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 371 (397)
.+. +.. +| +.|+|++|.+. .++.. ...+++|+.|++++++
T Consensus 195 -lp~-~~~--~L~~~~~~L~~L~Ls~N~l~--~lp~~-l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 195 -LPA-VPV--RNHHSEETEIFFRCRENRIT--HIPEN-ILSLDPTCTIILEDNP 241 (571)
T ss_dssp -CCC-CC----------CCEEEECCSSCCC--CCCGG-GGGSCTTEEEECCSSS
T ss_pred -hhh-HHH--hhhcccccceEEecCCCcce--ecCHH-HhcCCCCCEEEeeCCc
Confidence 333 443 66 99999777664 33443 5568899999999875
No 109
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.54 E-value=3.9e-15 Score=147.74 Aligned_cols=92 Identities=24% Similarity=0.338 Sum_probs=78.0
Q ss_pred ccc-cccccccchhhhHHHHh-----------hhccCCCCCccChHHHHHHHHhc--CCCC----C-CHHHHHHHHHHHH
Q 045321 4 ILS-RTCSVWELSFHLKACGI-----------YLCVFPPSIKISTRQLRQLWIAE--GFIQ----Y-NSEETAEHYLKEL 64 (397)
Q Consensus 4 il~-L~lSY~~L~~~lk~cFl-----------~~a~fp~~~~i~~~~Li~~w~a~--g~i~----~-~~~~~~~~~~~~L 64 (397)
|.+ |++||++||.++|.||+ |||+||+|+.|+ +++|+|+ ||+. + ..+++++ ||++|
T Consensus 363 i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L 437 (549)
T 2a5y_B 363 VECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRL 437 (549)
T ss_dssp TCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHT
T ss_pred HHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHH
Confidence 445 79999999999999999 999999999998 8999999 9997 2 5888888 99999
Q ss_pred HhCCceeeEecCCCCceeEEEeCHHHHHHHHHHhccCCe
Q 045321 65 IHRGFFQVSKRRAGGTIKACYVPSLVYYSLLLVAEKTRF 103 (397)
Q Consensus 65 ~~~~ll~~~~~~~~~~~~~~~mhdli~dl~~~~~~~~~~ 103 (397)
+++||++....+ ....|+|||+||++|+.++.++++
T Consensus 438 ~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 438 SKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp TTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred HHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence 999999987653 336799999999999998876543
No 110
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.54 E-value=8.5e-17 Score=159.95 Aligned_cols=178 Identities=20% Similarity=0.171 Sum_probs=134.2
Q ss_pred cCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCC--------------CcccCccccCCCCCcEEe-cCCcccccc
Q 045321 162 EKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPS--------------LKCLPSLLCTILNLQTLE-MPSSYVDHS 226 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~--------------i~~lp~~~~~l~~L~~L~-l~~~~l~~l 226 (397)
...++|+.|++++|.++.+|++++++.+|+.|+++++. ....|..++.+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56778889999999999999999999999999986653 234567778888888888 555544444
Q ss_pred hh------hhhccc--cCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCe
Q 045321 227 LE------DIWMMQ--KLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKL 298 (397)
Q Consensus 227 p~------~~~~L~--~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L 298 (397)
+. .+..++ .|+.|+++ ++....+|. ++.+++|+.|++++|.+ ..+|..++.+++|+.|++++ ..+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls-~n~l~~lp~-~~~l~~L~~L~Ls~N~l----~~lp~~~~~l~~L~~L~Ls~-N~l 498 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLA-HKDLTVLCH-LEQLLLVTHLDLSHNRL----RALPPALAALRCLEVLQASD-NAL 498 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECT-TSCCSSCCC-GGGGTTCCEEECCSSCC----CCCCGGGGGCTTCCEEECCS-SCC
T ss_pred hhhhhhcccccccCccCceEEEec-CCCCCCCcC-ccccccCcEeecCcccc----cccchhhhcCCCCCEEECCC-CCC
Confidence 43 233322 68899999 888888886 99999999999998876 46778888888888888877 345
Q ss_pred eEEEeccCCCCCCceEEEEecccCCCCC-ccccccCcCCceEEEecccccC
Q 045321 299 SRVVLSKYQFPLSLSHLSLSNTELMQDP-MPIMEKLPRLQVLKLKQNSYLG 348 (397)
Q Consensus 299 ~~L~l~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~~~~~~ 348 (397)
+.++ .++. +++|+.|+|++|.+.... +..++.+++|+.|+|++|.+.+
T Consensus 499 ~~lp-~l~~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 499 ENVD-GVAN-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp CCCG-GGTT-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CCCc-ccCC-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 5544 5666 788888888888775554 6677888888888887666543
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.54 E-value=1.4e-14 Score=136.44 Aligned_cols=169 Identities=21% Similarity=0.208 Sum_probs=84.4
Q ss_pred EEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-c-CCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321 169 LLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-C-TILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 169 ~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~-~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 245 (397)
+++++++.++.+|..+. ..+++|++++|.+..+|... . ++++|++|++++|.+..+|. .+..+++|++|+++ ++
T Consensus 22 ~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~N 98 (361)
T 2xot_A 22 ILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS-SN 98 (361)
T ss_dssp EEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SS
T ss_pred EEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC-CC
Confidence 44555555555554332 23455555555555444332 2 45555555555555555443 25555555555555 44
Q ss_pred CCCCCCc-cccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEec-c---CCCCCCceEEEEecc
Q 045321 246 LPAPPKN-YSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLS-K---YQFPLSLSHLSLSNT 320 (397)
Q Consensus 246 ~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~-~---~~~l~~L~~L~L~~~ 320 (397)
.+..+|. .++.+++|+.|++++|.+ ....+..+..+++|+.|++++ ..++.++.. + .. +++|+.|+|++|
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i---~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~-l~~L~~L~L~~N 173 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHI---VVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNK-LPKLMLLDLSSN 173 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCC---CEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC-----CTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcc---cEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCccc-CCcCCEEECCCC
Confidence 4444433 244555555555555543 222234445555555555554 223332221 1 23 677777777777
Q ss_pred cCCCCCccccccCcC--CceEEEeccc
Q 045321 321 ELMQDPMPIMEKLPR--LQVLKLKQNS 345 (397)
Q Consensus 321 ~l~~~~~~~l~~l~~--L~~L~L~~~~ 345 (397)
.+...+...+..+++ ++.|+|.+|.
T Consensus 174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 174 KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred CCCccCHHHhhhccHhhcceEEecCCC
Confidence 765555555666665 3667776554
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.54 E-value=6.3e-14 Score=123.15 Aligned_cols=103 Identities=17% Similarity=0.144 Sum_probs=46.4
Q ss_pred CeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321 165 KYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF 241 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 241 (397)
+.|++|++++|.++.+ |..++++.+|++|++++|.+..+|.. +..+++|++|++++|.+..+|.. +..+++|++|++
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L 119 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM 119 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence 3444444444444433 33344444444444444444444432 24444444444444444444433 344444444444
Q ss_pred cCCCCCCCCCccccCCCCCcEEEcCCC
Q 045321 242 GSITLPAPPKNYSSSLKNLIFISALNP 268 (397)
Q Consensus 242 ~~~~~~~~~p~~i~~l~~L~~l~l~~~ 268 (397)
+ ++....+|..++.+++|+.+++++|
T Consensus 120 s-~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 120 C-CNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp C-SSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred c-CCcccccCcccccCCCCCEEECCCC
Confidence 4 4444444444444444444444443
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.53 E-value=5.3e-14 Score=122.86 Aligned_cols=147 Identities=14% Similarity=0.159 Sum_probs=90.7
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc--cccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS--LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSI 244 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~ 244 (397)
++++++++.++.+|..+. ..+++|++++|.+..++. .++.+++|++|++++|.+..++. .++.+++|++|+++ +
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls-~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLT-S 90 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC-S
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECC-C
Confidence 467777777777776554 345777777777776632 36777777777777777777665 47777777777777 7
Q ss_pred CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEeccCCCCCCceEEEEecccCC
Q 045321 245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVLSKYQFPLSLSHLSLSNTELM 323 (397)
Q Consensus 245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l~~~~~l~~L~~L~L~~~~l~ 323 (397)
+....+|.. ++.+++|+++++++|.+ ....+..+.. +++|++|+|++|.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l---~~~~~~~~~~-------------------------l~~L~~L~L~~N~l~ 142 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRI---TCVGNDSFIG-------------------------LSSVRLLSLYDNQIT 142 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCC---CCBCTTSSTT-------------------------CTTCSEEECTTSCCC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcC---CeECHhHcCC-------------------------CccCCEEECCCCcCC
Confidence 666655543 66777777777777644 1222233333 444555555555544
Q ss_pred CCCccccccCcCCceEEEeccc
Q 045321 324 QDPMPIMEKLPRLQVLKLKQNS 345 (397)
Q Consensus 324 ~~~~~~l~~l~~L~~L~L~~~~ 345 (397)
...+..+..+++|+.|++++|.
T Consensus 143 ~~~~~~~~~l~~L~~L~L~~N~ 164 (220)
T 2v70_A 143 TVAPGAFDTLHSLSTLNLLANP 164 (220)
T ss_dssp CBCTTTTTTCTTCCEEECCSCC
T ss_pred EECHHHhcCCCCCCEEEecCcC
Confidence 3334445555555555554443
No 114
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.52 E-value=8.8e-15 Score=137.77 Aligned_cols=233 Identities=10% Similarity=0.033 Sum_probs=162.1
Q ss_pred CCCeEEEEEEeCccchhhc----c--CCCC-CeeEEEEeCCCCccccccchhHHhcCC-CeeEEEEcCCCCccccc-cc-
Q 045321 114 LANVKRCFILEDLIEFIFL----E--QSGM-YLQSFLNHSSESDHLALIDCENFCEKF-KYLRLLNLGYAVLDQFP-LG- 183 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~~~----~--~~~~-~Lr~L~~~~~~~~~~~~~~l~~~~~~l-~~Lr~L~l~~~~i~~lp-~~- 183 (397)
...++++.+..+....... . ..++ +|++|.+.++.........+...+... +.|++|++++|.++..+ ..
T Consensus 21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 4568999998555444332 3 5677 999999999987642222332222343 99999999999988443 33
Q ss_pred ---ccCC-CCCceEecCCCCCcccCc-c----ccC-CCCCcEEecCCcccc-----cchhhhhccc-cCcEEEecCCCCC
Q 045321 184 ---LENL-ILLKHLKLNIPSLKCLPS-L----LCT-ILNLQTLEMPSSYVD-----HSLEDIWMMQ-KLMHLNFGSITLP 247 (397)
Q Consensus 184 ---~~~l-~~L~~L~l~~~~i~~lp~-~----~~~-l~~L~~L~l~~~~l~-----~lp~~~~~L~-~L~~L~l~~~~~~ 247 (397)
+..+ .+|++|++++|.+...+. . +.. .++|++|++++|.+. .++..+..++ +|++|+++ +|..
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls-~n~l 179 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLR-GNNL 179 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECT-TSCG
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeec-CCCC
Confidence 4455 899999999999986653 2 334 369999999999766 5667777776 99999999 8865
Q ss_pred CCCC-c----cccCC-CCCcEEEcCCCeeeEE-eccHHhhhcCC-CCCcEEEeecCCCeeEEEe-----ccCCCCCCceE
Q 045321 248 APPK-N----YSSSL-KNLIFISALNPNLSCY-HSGVSNSLLGL-HKLECLKLVNESKLSRVVL-----SKYQFPLSLSH 314 (397)
Q Consensus 248 ~~~p-~----~i~~l-~~L~~l~l~~~~L~i~-~~~~~~~l~~l-~~L~~L~l~~~~~L~~L~l-----~~~~~l~~L~~ 314 (397)
.... . .+... ++|+.+++++|.+.-. ...++..+... ++|+.|+++++ .+..... .+.. +++|+.
T Consensus 180 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~~~~-l~~L~~ 257 (362)
T 3goz_A 180 ASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENLKLLKDS-LKHLQT 257 (362)
T ss_dssp GGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHHHHTTTT-TTTCSE
T ss_pred chhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHHHHHHhc-CCCccE
Confidence 4433 2 34445 6999999999966210 11366677664 59999999985 3333211 3455 899999
Q ss_pred EEEecccCCCCCc-------cccccCcCCceEEEecccccCc
Q 045321 315 LSLSNTELMQDPM-------PIMEKLPRLQVLKLKQNSYLGR 349 (397)
Q Consensus 315 L~L~~~~l~~~~~-------~~l~~l~~L~~L~L~~~~~~~~ 349 (397)
|++++|.+..... ..+..+++|+.|++++|.....
T Consensus 258 L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 258 VYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp EEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred EEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 9999998433222 2456788899999977765443
No 115
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.51 E-value=2.9e-14 Score=116.40 Aligned_cols=126 Identities=17% Similarity=0.053 Sum_probs=97.5
Q ss_pred CCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCccccc-chhhhhccccCcEE
Q 045321 163 KFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDH-SLEDIWMMQKLMHL 239 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L 239 (397)
..+.|+.|++++|.+. .+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 4467888888888887 7888788888888888888888877 678888888888888887777 77777778888888
Q ss_pred EecCCCCCCCCC--ccccCCCCCcEEEcCCCeeeEEeccHH---hhhcCCCCCcEEEee
Q 045321 240 NFGSITLPAPPK--NYSSSLKNLIFISALNPNLSCYHSGVS---NSLLGLHKLECLKLV 293 (397)
Q Consensus 240 ~l~~~~~~~~~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~---~~l~~l~~L~~L~l~ 293 (397)
+++ +|....+| ..++.+++|+.+++++|.+ ....+ ..+..+++|+.|+++
T Consensus 94 ~ls-~N~i~~~~~~~~~~~l~~L~~L~l~~N~l---~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLS-GNKIKDLSTIEPLKKLENLKSLDLFNCEV---TNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECT-TSCCCSHHHHGGGGGCTTCCEEECTTCGG---GGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECC-CCcCCChHHHHHHhhCCCCCEEeCcCCcc---cchHHHHHHHHHHCCCcccccCC
Confidence 888 77766654 6788888888888888755 22211 357777788777664
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.51 E-value=3.5e-14 Score=118.46 Aligned_cols=126 Identities=17% Similarity=0.075 Sum_probs=92.8
Q ss_pred CCCeeEEEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCccccc-chhhhhccccCcEE
Q 045321 163 KFKYLRLLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDH-SLEDIWMMQKLMHL 239 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~-lp~~~~~L~~L~~L 239 (397)
..+.|++|++++|.+. .+|..++.+++|++|++++|.+..+ ..++.+++|++|++++|.+.. +|..++.+++|++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 4467888888888887 7787778888888888888888777 677888888888888887766 66667778888888
Q ss_pred EecCCCCCCCCC--ccccCCCCCcEEEcCCCeeeEEeccHH----hhhcCCCCCcEEEeec
Q 045321 240 NFGSITLPAPPK--NYSSSLKNLIFISALNPNLSCYHSGVS----NSLLGLHKLECLKLVN 294 (397)
Q Consensus 240 ~l~~~~~~~~~p--~~i~~l~~L~~l~l~~~~L~i~~~~~~----~~l~~l~~L~~L~l~~ 294 (397)
+++ +|....+| ..++.+++|+.+++++|.+ ...+ ..+..+++|+.|++++
T Consensus 101 ~Ls-~N~l~~~~~~~~l~~l~~L~~L~l~~N~l----~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 101 NLS-GNKLKDISTLEPLKKLECLKSLDLFNCEV----TNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp ECB-SSSCCSSGGGGGGSSCSCCCEEECCSSGG----GTSTTHHHHHHTTCSSCCEETTEE
T ss_pred ecc-CCccCcchhHHHHhcCCCCCEEEeeCCcC----cchHHHHHHHHHhCccCcEecCCC
Confidence 888 77777765 5777888888888887754 2222 2455555555555544
No 117
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=8.5e-14 Score=122.31 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=66.2
Q ss_pred CCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCccccccc-ccCCCCCceEecCCCCCcccCcc-ccCCCCC
Q 045321 137 MYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLG-LENLILLKHLKLNIPSLKCLPSL-LCTILNL 213 (397)
Q Consensus 137 ~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 213 (397)
++|+.|.+.++... .+ +..|..+++|++|++++|.+..+|.. +..+.+|++|++++|.++.+|.. +..+++|
T Consensus 40 ~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L 114 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHL 114 (229)
T ss_dssp TTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCCCEEEcCCCccC-----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhh
Confidence 55555555555543 22 33335555555555555555555432 35555555555555555555443 3455555
Q ss_pred cEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCC
Q 045321 214 QTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNP 268 (397)
Q Consensus 214 ~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~ 268 (397)
++|++++|.+..+|..+..+++|++|+++ ++....+|. .+..+++|+.+++++|
T Consensus 115 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 115 KELFMCCNKLTELPRGIERLTHLTHLALD-QNQLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CEEECCSSCCCSCCTTGGGCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEeccCCcccccCcccccCCCCCEEECC-CCcCCccCHHHHhCCCCCCEEEeeCC
Confidence 55555555555555555555555555555 554444443 2444555555555444
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.49 E-value=1.8e-13 Score=119.46 Aligned_cols=104 Identities=10% Similarity=0.090 Sum_probs=61.7
Q ss_pred eeEEEEcCCCCccccc--ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321 166 YLRLLNLGYAVLDQFP--LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF 241 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 241 (397)
.+++|++++|.++.++ ..++++++|++|++++|.++.+|+ .+..+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 112 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEEC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEEC
Confidence 3456666666666542 235566666666666666665544 466666666666666655555543 566666666666
Q ss_pred cCCCCCCCC-CccccCCCCCcEEEcCCCee
Q 045321 242 GSITLPAPP-KNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 242 ~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L 270 (397)
+ ++....+ |..++.+++|+.+++++|.+
T Consensus 113 s-~N~l~~~~~~~~~~l~~L~~L~L~~N~l 141 (220)
T 2v70_A 113 R-SNRITCVGNDSFIGLSSVRLLSLYDNQI 141 (220)
T ss_dssp T-TSCCCCBCTTSSTTCTTCSEEECTTSCC
T ss_pred C-CCcCCeECHhHcCCCccCCEEECCCCcC
Confidence 6 5554444 44566666666666666544
No 119
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.49 E-value=8.9e-16 Score=154.00 Aligned_cols=129 Identities=15% Similarity=0.046 Sum_probs=89.9
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCC-Cccc--ccccccCCCCCceEecCCCCCcc-----cCc
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYA-VLDQ--FPLGLENLILLKHLKLNIPSLKC-----LPS 205 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~-~i~~--lp~~~~~l~~L~~L~l~~~~i~~-----lp~ 205 (397)
..+++|++|.+.++.... ..+..+...+++|++|++++| .+.. ++....++++|++|++++|.+.. ++.
T Consensus 102 ~~~~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~ 178 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH 178 (594)
T ss_dssp HHCTTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG
T ss_pred HhCCCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH
Confidence 468899999999987642 122445347899999999999 4653 55556689999999999987543 434
Q ss_pred cccCCCCCcEEecCCcc--c--ccchhhhhccccCcEEEecCCCC-CCCCCccccCCCCCcEEEcC
Q 045321 206 LLCTILNLQTLEMPSSY--V--DHSLEDIWMMQKLMHLNFGSITL-PAPPKNYSSSLKNLIFISAL 266 (397)
Q Consensus 206 ~~~~l~~L~~L~l~~~~--l--~~lp~~~~~L~~L~~L~l~~~~~-~~~~p~~i~~l~~L~~l~l~ 266 (397)
....+++|++|++++|. + ..++..+..+++|++|+++ +|. ...+|..++.+++|+.+.++
T Consensus 179 ~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 179 FPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN-RAVPLEKLATLLQRAPQLEELGTG 243 (594)
T ss_dssp SCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC-TTSCHHHHHHHHHHCTTCSEEECS
T ss_pred HhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC-CCCcHHHHHHHHhcCCcceEcccc
Confidence 44577899999999985 2 2234445667999999999 772 22344445555555555543
No 120
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.8e-13 Score=119.49 Aligned_cols=102 Identities=14% Similarity=0.129 Sum_probs=48.9
Q ss_pred eeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEec
Q 045321 166 YLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFG 242 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~ 242 (397)
.+++|++++|.++.+|. .+..+++|++|++++|.+..+ |..+..+++|++|++++|.+..+|.. +..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44555555555444432 344455555555555554443 34445555555555555544444443 3445555555555
Q ss_pred CCCCCCCC-CccccCCCCCcEEEcCCC
Q 045321 243 SITLPAPP-KNYSSSLKNLIFISALNP 268 (397)
Q Consensus 243 ~~~~~~~~-p~~i~~l~~L~~l~l~~~ 268 (397)
++....+ |..++.+++|+.+++++|
T Consensus 113 -~N~l~~~~~~~~~~l~~L~~L~L~~N 138 (220)
T 2v9t_B 113 -ANKINCLRVDAFQDLHNLNLLSLYDN 138 (220)
T ss_dssp -SSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred -CCCCCEeCHHHcCCCCCCCEEECCCC
Confidence 4443333 233444555555555544
No 121
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.47 E-value=4.6e-14 Score=115.25 Aligned_cols=128 Identities=18% Similarity=0.182 Sum_probs=104.8
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~ 212 (397)
...++++.|.+.++.... ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus 14 ~~~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~ 89 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89 (149)
T ss_dssp CCGGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTT
T ss_pred CCCccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCC
Confidence 445778888888887641 13444558889999999999998877 778899999999999999887 7777778999
Q ss_pred CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEEcC
Q 045321 213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFISAL 266 (397)
Q Consensus 213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~l~ 266 (397)
|++|++++|.+..+| ..++.+++|++|+++ +|....+|. .++.+++|+.++++
T Consensus 90 L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 90 LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLF-NCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CCEEECTTSCCCSHHHHGGGGGCTTCCEEECT-TCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCEEECCCCcCCChHHHHHHhhCCCCCEEeCc-CCcccchHHHHHHHHHHCCCcccccCC
Confidence 999999999888876 678999999999999 887777765 57888999988765
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.46 E-value=5.4e-14 Score=117.29 Aligned_cols=130 Identities=18% Similarity=0.166 Sum_probs=93.3
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcc-cCccccCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKC-LPSLLCTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~-lp~~~~~l~~ 212 (397)
...++|+.|.+.++.... ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..++.+++
T Consensus 21 ~~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence 445677777777776530 13333446777788888888887766 667778888888888887776 6666666888
Q ss_pred CcEEecCCcccccch--hhhhccccCcEEEecCCCCCCCCCc----cccCCCCCcEEEcCCC
Q 045321 213 LQTLEMPSSYVDHSL--EDIWMMQKLMHLNFGSITLPAPPKN----YSSSLKNLIFISALNP 268 (397)
Q Consensus 213 L~~L~l~~~~l~~lp--~~~~~L~~L~~L~l~~~~~~~~~p~----~i~~l~~L~~l~l~~~ 268 (397)
|++|++++|.+..+| ..++.+++|++|+++ +|....+|. .++.+++|+.+++++|
T Consensus 97 L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~-~N~l~~~~~~~~~~~~~l~~L~~L~l~~n 157 (168)
T 2ell_A 97 LTHLNLSGNKLKDISTLEPLKKLECLKSLDLF-NCEVTNLNDYRESVFKLLPQLTYLDGYDR 157 (168)
T ss_dssp CCEEECBSSSCCSSGGGGGGSSCSCCCEEECC-SSGGGTSTTHHHHHHTTCSSCCEETTEET
T ss_pred CCEEeccCCccCcchhHHHHhcCCCCCEEEee-CCcCcchHHHHHHHHHhCccCcEecCCCC
Confidence 888888888777766 567778888888887 776666665 5777888888777765
No 123
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.5e-13 Score=115.54 Aligned_cols=103 Identities=16% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCCeeEEEEcCCCCcccccccccCCC-CCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhh-hccccCcEEE
Q 045321 163 KFKYLRLLNLGYAVLDQFPLGLENLI-LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDI-WMMQKLMHLN 240 (397)
Q Consensus 163 ~l~~Lr~L~l~~~~i~~lp~~~~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~-~~L~~L~~L~ 240 (397)
.+..|++|++++|.++.+|. +..+. +|++|++++|.+..+ +.++.+++|++|++++|.+..+|+.+ +.+++|++|+
T Consensus 17 ~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp CTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 34444555555554444432 22222 455555555444444 33444455555555555444444332 4444555555
Q ss_pred ecCCCCCCCCCc--cccCCCCCcEEEcCCC
Q 045321 241 FGSITLPAPPKN--YSSSLKNLIFISALNP 268 (397)
Q Consensus 241 l~~~~~~~~~p~--~i~~l~~L~~l~l~~~ 268 (397)
++ ++....+|. .++.+++|+.+++++|
T Consensus 95 L~-~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 95 LT-NNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp CC-SCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred CC-CCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 54 444444443 3444444444444444
No 124
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.45 E-value=1.1e-13 Score=116.44 Aligned_cols=129 Identities=12% Similarity=0.061 Sum_probs=111.1
Q ss_pred CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccc-cCCCC
Q 045321 134 QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLL-CTILN 212 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~-~~l~~ 212 (397)
..+++|+.|.+.++... .++.+....+.|++|++++|.++.+ +.++.+++|++|++++|.+..+|+.+ +.+++
T Consensus 16 ~~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 89 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD 89 (176)
T ss_dssp ECTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred CCcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence 67889999999998775 3444533344999999999999987 67899999999999999999998766 89999
Q ss_pred CcEEecCCcccccchh--hhhccccCcEEEecCCCCCCCCCcc----ccCCCCCcEEEcCCCe
Q 045321 213 LQTLEMPSSYVDHSLE--DIWMMQKLMHLNFGSITLPAPPKNY----SSSLKNLIFISALNPN 269 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~--~~~~L~~L~~L~l~~~~~~~~~p~~----i~~l~~L~~l~l~~~~ 269 (397)
|++|++++|.+..+|. .++.+++|++|+++ ++....+|.. ++.+++|+.++++++.
T Consensus 90 L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~-~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 90 LTELILTNNSLVELGDLDPLASLKSLTYLCIL-RNPVTNKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp CCEEECCSCCCCCGGGGGGGGGCTTCCEEECC-SSGGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred CCEEECCCCcCCcchhhHhhhcCCCCCEEEec-CCCCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence 9999999999999997 78999999999999 8887778875 8889999999888763
No 125
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.44 E-value=2.6e-13 Score=127.61 Aligned_cols=151 Identities=16% Similarity=0.095 Sum_probs=107.8
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhc-CCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCE-KFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTIL 211 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~-~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 211 (397)
.+.++.|.+.++... .+ +..|. .+++|++|++++|.+..++ ..+.++++|++|++++|.++.+|. .+..++
T Consensus 38 ~~~l~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 38 PSYTALLDLSHNNLS-----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CTTCSEEECCSSCCC-----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCCCC-----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 455788888887765 33 44445 7888888888888888665 457888888888888888887765 467888
Q ss_pred CCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCccc----cCCCCCcEEEcCCCeeeEEeccHHhhhcCCCC
Q 045321 212 NLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNYS----SSLKNLIFISALNPNLSCYHSGVSNSLLGLHK 286 (397)
Q Consensus 212 ~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~i----~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~ 286 (397)
+|++|++++|.+..+ |..+..+++|++|+++ ++....+|..+ +.+++|+.+++++|.+ ....+..+..++.
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~-~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l---~~l~~~~~~~l~~ 188 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS-QNQISRFPVELIKDGNKLPKLMLLDLSSNKL---KKLPLTDLQKLPA 188 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECC-SSCCCSCCGGGTC----CTTCCEEECCSSCC---CCCCHHHHHHSCH
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECC-CCcCCeeCHHHhcCcccCCcCCEEECCCCCC---CccCHHHhhhccH
Confidence 888888888877776 4457888888888888 77777777664 5688888888888765 2223345555655
Q ss_pred --CcEEEeecC
Q 045321 287 --LECLKLVNE 295 (397)
Q Consensus 287 --L~~L~l~~~ 295 (397)
++.|++.++
T Consensus 189 ~~l~~l~l~~N 199 (361)
T 2xot_A 189 WVKNGLYLHNN 199 (361)
T ss_dssp HHHTTEECCSS
T ss_pred hhcceEEecCC
Confidence 366777764
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.42 E-value=6.7e-13 Score=113.24 Aligned_cols=120 Identities=17% Similarity=0.123 Sum_probs=82.1
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc--ccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL--LCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSI 244 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~ 244 (397)
++++++++.++.+|..+.. +|++|++++|.+..+|.. ++.+++|++|++++|.+..+ |..++.+++|++|+++ +
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls-~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG-E 87 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC-S
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC-C
Confidence 5778888888777776654 788888888888777653 77888888888888877776 5567788888888887 7
Q ss_pred CCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEee
Q 045321 245 TLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLV 293 (397)
Q Consensus 245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~ 293 (397)
+....++.. ++.+++|+.+++++|.+ ....+..+..+++|+.|+++
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l---~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQI---SCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCC---CEECTTSSTTCTTCCEEECT
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcC---CeeCHHHhhcCCCCCEEEeC
Confidence 766655543 67777777777777755 22233444444444444443
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.40 E-value=5.4e-13 Score=132.56 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=47.2
Q ss_pred CceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCe
Q 045321 190 LKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPN 269 (397)
Q Consensus 190 L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~ 269 (397)
|++|++++|.++.+|. ++.+++|++|++++|.+..+|..++.+++|++|+++ ++....+| .++.+++|+.|++++|.
T Consensus 443 L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~lp-~l~~l~~L~~L~Ls~N~ 519 (567)
T 1dce_A 443 VRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQAS-DNALENVD-GVANLPRLQELLLCNNR 519 (567)
T ss_dssp CSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECC-SSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred ceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECC-CCCCCCCc-ccCCCCCCcEEECCCCC
Confidence 4445555554444443 444555555555555444454445555555555554 44444444 44445555555554443
Q ss_pred eeEEeccH-HhhhcCCCCCcEEEeec
Q 045321 270 LSCYHSGV-SNSLLGLHKLECLKLVN 294 (397)
Q Consensus 270 L~i~~~~~-~~~l~~l~~L~~L~l~~ 294 (397)
+ .... |..++.+++|+.|++++
T Consensus 520 l---~~~~~p~~l~~l~~L~~L~L~~ 542 (567)
T 1dce_A 520 L---QQSAAIQPLVSCPRLVLLNLQG 542 (567)
T ss_dssp C---CSSSTTGGGGGCTTCCEEECTT
T ss_pred C---CCCCCcHHHhcCCCCCEEEecC
Confidence 3 1111 44444555555555544
No 128
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.39 E-value=2.1e-12 Score=110.17 Aligned_cols=100 Identities=15% Similarity=0.172 Sum_probs=59.6
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSITL 246 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~~ 246 (397)
++++++++.++.+|..+. .+|++|++++|.+..+|..+..+++|++|++++|.+..++. .+..+++|++|+++ ++.
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls-~N~ 89 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILS-YNR 89 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SSC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECC-CCc
Confidence 355666666666665443 45666666666666666666666666666666666655553 35666666666666 555
Q ss_pred CCCCCc-cccCCCCCcEEEcCCCee
Q 045321 247 PAPPKN-YSSSLKNLIFISALNPNL 270 (397)
Q Consensus 247 ~~~~p~-~i~~l~~L~~l~l~~~~L 270 (397)
...+++ .++.+++|+.+++++|.+
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCC
Confidence 554443 355666666666665543
No 129
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.34 E-value=3.7e-14 Score=121.71 Aligned_cols=112 Identities=15% Similarity=0.071 Sum_probs=82.6
Q ss_pred chhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhcccc
Q 045321 156 DCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQK 235 (397)
Q Consensus 156 ~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~ 235 (397)
.++..+..+++|++|++++|.++.+| .++++++|++|++++|.+..+|..+..+++|++|++++|.+..+| .++.+++
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~ 116 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVN 116 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHH
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCC
Confidence 33334477788888888888877777 777788888888888877777777777778888888888777776 4777788
Q ss_pred CcEEEecCCCCCCCCCc--cccCCCCCcEEEcCCCee
Q 045321 236 LMHLNFGSITLPAPPKN--YSSSLKNLIFISALNPNL 270 (397)
Q Consensus 236 L~~L~l~~~~~~~~~p~--~i~~l~~L~~l~l~~~~L 270 (397)
|++|+++ ++....++. .++.+++|+.+++++|.+
T Consensus 117 L~~L~l~-~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMS-NNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEES-EEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECC-CCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 8888887 766665543 567777777777777644
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.31 E-value=1.1e-11 Score=105.82 Aligned_cols=105 Identities=15% Similarity=0.061 Sum_probs=93.3
Q ss_pred CeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchh-hhhccccCcEEEec
Q 045321 165 KYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFG 242 (397)
Q Consensus 165 ~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~ 242 (397)
+.|++|++++|.++.+|..+.++.+|++|++++|.++.++. .+..+++|++|++++|.+..+|. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 57999999999999999999999999999999999998874 58899999999999998888876 58999999999999
Q ss_pred CCCCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321 243 SITLPAPPKNY-SSSLKNLIFISALNPNL 270 (397)
Q Consensus 243 ~~~~~~~~p~~-i~~l~~L~~l~l~~~~L 270 (397)
++....+|.. +..+++|+.+++++|.+
T Consensus 111 -~N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 111 -GNDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp -SSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred -CCCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888775 78899999999998754
No 131
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=2.7e-12 Score=131.44 Aligned_cols=120 Identities=11% Similarity=-0.021 Sum_probs=99.3
Q ss_pred EcCCCCcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCCCCCCCC
Q 045321 171 NLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPP 250 (397)
Q Consensus 171 ~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~ 250 (397)
++..+.+...|..+..+.+|+.|+|++|.+..+|..+.++++|++|+|++|.+..+|..+++|++|++|+++ +|.+..+
T Consensus 207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls-~N~l~~l 285 (727)
T 4b8c_D 207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLS-HNRLTSL 285 (727)
T ss_dssp ---------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECT-TSCCSSC
T ss_pred cccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCc-CCcCCcc
Confidence 333444445577889999999999999999999999999999999999999999999999999999999999 9988899
Q ss_pred CccccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecC
Q 045321 251 KNYSSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNE 295 (397)
Q Consensus 251 p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~ 295 (397)
|..++.+++|+.|++++|.+ ..+|..++.+++|+.|+++++
T Consensus 286 p~~~~~l~~L~~L~L~~N~l----~~lp~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 286 PAELGSCFQLKYFYFFDNMV----TTLPWEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp CSSGGGGTTCSEEECCSSCC----CCCCSSTTSCTTCCCEECTTS
T ss_pred ChhhcCCCCCCEEECCCCCC----CccChhhhcCCCccEEeCCCC
Confidence 99999999999999999976 577888999999999999985
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.29 E-value=8.8e-12 Score=106.25 Aligned_cols=104 Identities=15% Similarity=0.110 Sum_probs=85.7
Q ss_pred eeEEEEcCCCCccccccc--ccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEe
Q 045321 166 YLRLLNLGYAVLDQFPLG--LENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNF 241 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp~~--~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l 241 (397)
.+++|++++|.+..++.. ++.+++|++|++++|.++.+ |..++.+++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788899999988877653 78889999999999888876 67788899999999999988887765 788899999999
Q ss_pred cCCCCCCCC-CccccCCCCCcEEEcCCCee
Q 045321 242 GSITLPAPP-KNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 242 ~~~~~~~~~-p~~i~~l~~L~~l~l~~~~L 270 (397)
+ ++....+ |..++.+++|+.+++++|.+
T Consensus 110 ~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 110 Y-DNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp C-SSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred C-CCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 8 7765544 66788889999999988754
No 133
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.25 E-value=4.4e-11 Score=100.41 Aligned_cols=98 Identities=16% Similarity=0.128 Sum_probs=46.8
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
+.++++++.+..+|..+. .+|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+++ ++
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH-EN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC-CC
Confidence 344555555554443332 3455555555555544432 34455555555555544444433 3455555555555 44
Q ss_pred CCCCCCcc-ccCCCCCcEEEcCCC
Q 045321 246 LPAPPKNY-SSSLKNLIFISALNP 268 (397)
Q Consensus 246 ~~~~~p~~-i~~l~~L~~l~l~~~ 268 (397)
....+|.. ++.+++|+.+++++|
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N 110 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTN 110 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CccccCHHHhhCCcccCEEECcCC
Confidence 44444433 344555555555444
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.21 E-value=6.4e-11 Score=99.17 Aligned_cols=100 Identities=22% Similarity=0.199 Sum_probs=80.6
Q ss_pred EEEEcCCCCcccccccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321 168 RLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 168 r~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
++++++++.+..+|..+. .+|++|++++|.+..+ |..++.+++|++|++++|.+..+|.. +..+++|++|+++ ++
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~-~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN-DN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC-SS
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC-CC
Confidence 678888888888887665 7888888888888877 45678888888888888888888876 5788888888888 87
Q ss_pred CCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321 246 LPAPPKNY-SSSLKNLIFISALNPNL 270 (397)
Q Consensus 246 ~~~~~p~~-i~~l~~L~~l~l~~~~L 270 (397)
....+|+. ++.+++|+.+++++|.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCc
Confidence 77777765 77888888888887744
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.20 E-value=1.1e-10 Score=98.02 Aligned_cols=106 Identities=16% Similarity=0.118 Sum_probs=87.2
Q ss_pred CCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCcccccchhh-hhccccCcEEE
Q 045321 164 FKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLN 240 (397)
Q Consensus 164 l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~ 240 (397)
.+.|++|+++++.+..+|. .++++.+|++|++++|.+..+|.. ++.+++|++|++++|.+..+|.. ++.+++|++|+
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~ 106 (177)
T 2o6r_A 27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA 106 (177)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence 4678899999998887765 458889999999999988888765 57899999999999988888765 68889999999
Q ss_pred ecCCCCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321 241 FGSITLPAPPKNY-SSSLKNLIFISALNPNL 270 (397)
Q Consensus 241 l~~~~~~~~~p~~-i~~l~~L~~l~l~~~~L 270 (397)
++ ++....+|.. +..+++|+.+++++|.+
T Consensus 107 l~-~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 107 LD-TNQLKSVPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CC-SSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred Cc-CCcceEeCHHHhcCCcccCEEEecCCCe
Confidence 98 8877777776 47788899998888754
No 136
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.19 E-value=8.1e-11 Score=98.13 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=85.9
Q ss_pred eEEEEcCCCCcccccccccCCCCCceEecCCCCCccc-CccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCC
Q 045321 167 LRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCL-PSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSI 244 (397)
Q Consensus 167 Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~ 244 (397)
.++++++++.++.+|..+. .+|++|++++|.++.+ |..+..+++|++|++++|.+..+|.. +..+++|++|+++ +
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN-D 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC-S
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC-C
Confidence 5688999999998987764 7899999999999887 56688999999999999988888876 5889999999999 8
Q ss_pred CCCCCCCcc-ccCCCCCcEEEcCCCee
Q 045321 245 TLPAPPKNY-SSSLKNLIFISALNPNL 270 (397)
Q Consensus 245 ~~~~~~p~~-i~~l~~L~~l~l~~~~L 270 (397)
+....+|+. ++.+++|+.+++++|.+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~ 114 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPW 114 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCC
Confidence 887777765 78899999999988744
No 137
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.18 E-value=1.3e-12 Score=112.09 Aligned_cols=120 Identities=21% Similarity=0.179 Sum_probs=89.7
Q ss_pred eEEEEcCCC--CcccccccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhhhhccccCcEEEecCC
Q 045321 167 LRLLNLGYA--VLDQFPLGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSI 244 (397)
Q Consensus 167 Lr~L~l~~~--~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~ 244 (397)
|+...+++. .++.+|..++.+++|++|++++|.+..+| .++.+++|++|++++|.+..+|..+..+++|++|+++ +
T Consensus 25 l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~-~ 102 (198)
T 1ds9_A 25 AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWIS-Y 102 (198)
T ss_dssp CSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEE-E
T ss_pred hheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECc-C
Confidence 334444443 34456668899999999999999988888 8899999999999999888899888888999999999 8
Q ss_pred CCCCCCCccccCCCCCcEEEcCCCeeeEEeccHH--hhhcCCCCCcEEEee
Q 045321 245 TLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVS--NSLLGLHKLECLKLV 293 (397)
Q Consensus 245 ~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~--~~l~~l~~L~~L~l~ 293 (397)
|....+| .++.+++|+.+++++|.+ ..++ ..+..+++|+.|+++
T Consensus 103 N~l~~l~-~~~~l~~L~~L~l~~N~i----~~~~~~~~l~~l~~L~~L~l~ 148 (198)
T 1ds9_A 103 NQIASLS-GIEKLVNLRVLYMSNNKI----TNWGEIDKLAALDKLEDLLLA 148 (198)
T ss_dssp EECCCHH-HHHHHHHSSEEEESEEEC----CCHHHHHHHTTTTTCSEEEEC
T ss_pred CcCCcCC-ccccCCCCCEEECCCCcC----CchhHHHHHhcCCCCCEEEec
Confidence 8777766 688888888888888755 3222 244444444444444
No 138
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.06 E-value=2.2e-10 Score=95.92 Aligned_cols=107 Identities=12% Similarity=0.059 Sum_probs=82.1
Q ss_pred eEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccc-cccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEe
Q 045321 140 QSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQF-PLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLE 217 (397)
Q Consensus 140 r~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~l-p~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~ 217 (397)
+++.+.++... .++. .-.+.|++|++++|.++.+ |..++++++|++|++++|.+..+|.. +.++++|++|+
T Consensus 15 ~~l~~~~n~l~-----~iP~--~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQNIRLA-----SVPA--GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCSSCCS-----SCCS--CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cEEEeCCCCCC-----ccCC--CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEE
Confidence 45566665543 3322 1137789999999998876 56788999999999999999988876 47899999999
Q ss_pred cCCcccccchhh-hhccccCcEEEecCCCCCCCCCccc
Q 045321 218 MPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNYS 254 (397)
Q Consensus 218 l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~i 254 (397)
+++|.+..+|.. +..+++|++|+++ ++.....+..+
T Consensus 88 L~~N~l~~l~~~~~~~l~~L~~L~L~-~N~~~c~~~~~ 124 (174)
T 2r9u_A 88 LNDNHLKSIPRGAFDNLKSLTHIYLY-NNPWDCECRDI 124 (174)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECC-SSCBCTTBGGG
T ss_pred CCCCccceeCHHHhccccCCCEEEeC-CCCcccccccH
Confidence 999988888876 8889999999998 77655555433
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.01 E-value=9.1e-10 Score=101.92 Aligned_cols=101 Identities=12% Similarity=-0.006 Sum_probs=59.6
Q ss_pred CCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCce-EEEEecccCCCCCccccccCc
Q 045321 257 LKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLS-HLSLSNTELMQDPMPIMEKLP 334 (397)
Q Consensus 257 l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~-~L~L~~~~l~~~~~~~l~~l~ 334 (397)
+++|+.+++++|.+ ...-...+..+++|+.+++.. +++.+.- .|.. +++|+ .+++.. .+.......|.+++
T Consensus 225 ~~~L~~l~L~~n~i---~~I~~~aF~~~~~L~~l~l~~--ni~~I~~~aF~~-~~~L~~~l~l~~-~l~~I~~~aF~~c~ 297 (329)
T 3sb4_A 225 MPNLVSLDISKTNA---TTIPDFTFAQKKYLLKIKLPH--NLKTIGQRVFSN-CGRLAGTLELPA-SVTAIEFGAFMGCD 297 (329)
T ss_dssp CTTCCEEECTTBCC---CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT-CTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred cCCCeEEECCCCCc---ceecHhhhhCCCCCCEEECCc--ccceehHHHhhC-ChhccEEEEEcc-cceEEchhhhhCCc
Confidence 56777777776544 222234567777777777764 3655533 3455 77777 787777 44444455677788
Q ss_pred CCceEEEecccccCceeEEeCCCCCCCCCEEE
Q 045321 335 RLQVLKLKQNSYLGRKLACVGSSSFPKLTVLH 366 (397)
Q Consensus 335 ~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~ 366 (397)
+|+.+.+..+.. ..+......++++|+.++
T Consensus 298 ~L~~l~l~~n~i--~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 298 NLRYVLATGDKI--TTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TEEEEEECSSCC--CEECTTTTCTTCCCCEEE
T ss_pred cCCEEEeCCCcc--CccchhhhcCCcchhhhc
Confidence 888888744433 122221244556666654
No 140
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=98.98 E-value=4.9e-10 Score=121.67 Aligned_cols=85 Identities=22% Similarity=0.280 Sum_probs=74.9
Q ss_pred cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEEe
Q 045321 7 RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYV 86 (397)
Q Consensus 7 L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m 86 (397)
+++||+.||+++|.||+|||+||+++.|+++.++.+|.++ ++.++.++++|++++|++.... +....|+|
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~~---~~~~~~~~ 437 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNRN---GKSFCYYL 437 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEES---SSSEEEEC
T ss_pred HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEecC---CCceEEEe
Confidence 6899999999999999999999999999999999999754 4668899999999999997653 33467999
Q ss_pred CHHHHHHHHHHhccC
Q 045321 87 PSLVYYSLLLVAEKT 101 (397)
Q Consensus 87 hdli~dl~~~~~~~~ 101 (397)
||++|++++..+.++
T Consensus 438 h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 438 HDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp CHHHHHHHHHHTGGG
T ss_pred cHHHHHHHHhhhhHH
Confidence 999999999887654
No 141
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=2.3e-09 Score=89.22 Aligned_cols=79 Identities=14% Similarity=0.024 Sum_probs=68.6
Q ss_pred CCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcC
Q 045321 189 LLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISAL 266 (397)
Q Consensus 189 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~ 266 (397)
..+.++++++.++++|..+. .+|++|++++|.+..+ |..++.+++|++|+++ ++.+..+|+. ++.+++|+.++++
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls-~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLD-NNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECC-SSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECC-CCCcCccChhhccCCCCCCEEECC
Confidence 35789999999999998774 8999999999999888 4568999999999999 8888888876 4789999999999
Q ss_pred CCee
Q 045321 267 NPNL 270 (397)
Q Consensus 267 ~~~L 270 (397)
+|.+
T Consensus 87 ~N~l 90 (170)
T 3g39_A 87 DNQL 90 (170)
T ss_dssp SSCC
T ss_pred CCcc
Confidence 8855
No 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=98.92 E-value=4.8e-10 Score=115.25 Aligned_cols=78 Identities=19% Similarity=0.150 Sum_probs=68.5
Q ss_pred cccccccchhhh-HHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEE
Q 045321 7 RTCSVWELSFHL-KACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACY 85 (397)
Q Consensus 7 L~lSY~~L~~~l-k~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~ 85 (397)
|++||+.||+++ |+||+|||+||+++.|+++.++.+|+++|. +.++.++++|+++||++... ....|+
T Consensus 359 LelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGe------edAe~~L~eLvdRSLLq~d~-----~~~rYr 427 (1221)
T 1vt4_I 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK------SDVMVVVNKLHKYSLVEKQP-----KESTIS 427 (1221)
T ss_dssp HHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS------HHHHHHHHHHHTSSSSSBCS-----SSSEEB
T ss_pred HHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH------HHHHHHHHHHHhhCCEEEeC-----CCCEEE
Confidence 699999999999 999999999999999999999999998862 45889999999999999831 225799
Q ss_pred eCHHHHHHHH
Q 045321 86 VPSLVYYSLL 95 (397)
Q Consensus 86 mhdli~dl~~ 95 (397)
|||++++++.
T Consensus 428 MHDLllELr~ 437 (1221)
T 1vt4_I 428 IPSIYLELKV 437 (1221)
T ss_dssp CCCHHHHHHH
T ss_pred ehHHHHHHhc
Confidence 9999999663
No 143
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.86 E-value=8.3e-09 Score=96.08 Aligned_cols=99 Identities=17% Similarity=0.084 Sum_probs=60.9
Q ss_pred EEcCCC-CcccccccccCCCCCceEecCC-CCCcccC-ccccCCCCCcEEecCCcccccchh-hhhccccCcEEEecCCC
Q 045321 170 LNLGYA-VLDQFPLGLENLILLKHLKLNI-PSLKCLP-SLLCTILNLQTLEMPSSYVDHSLE-DIWMMQKLMHLNFGSIT 245 (397)
Q Consensus 170 L~l~~~-~i~~lp~~~~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~-~~~~L~~L~~L~l~~~~ 245 (397)
++++++ .++.+|. ++.+.+|++|+|++ |.+..+| ..++.+++|++|+|++|.+..+|+ .++.|++|++|+++ ++
T Consensus 13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~-~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS-FN 90 (347)
T ss_dssp EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC-SS
T ss_pred EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC-CC
Confidence 456665 5666666 66666666666664 6666665 346666666666666666666554 35666666666666 66
Q ss_pred CCCCCCccccCCCCCcEEEcCCCee
Q 045321 246 LPAPPKNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 246 ~~~~~p~~i~~l~~L~~l~l~~~~L 270 (397)
.+..+|+.+.....|+.|++.+|.+
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPL 115 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCc
Confidence 6656665544333366666666533
No 144
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.79 E-value=1.8e-09 Score=101.54 Aligned_cols=134 Identities=15% Similarity=0.037 Sum_probs=70.7
Q ss_pred CCCeeEEEEeCCCCccccccchhHHhc-CCCeeEEEEcCCCCccc--ccccccCCCCCceEecCCCCCccc-----Cccc
Q 045321 136 GMYLQSFLNHSSESDHLALIDCENFCE-KFKYLRLLNLGYAVLDQ--FPLGLENLILLKHLKLNIPSLKCL-----PSLL 207 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l~~~~~-~l~~Lr~L~l~~~~i~~--lp~~~~~l~~L~~L~l~~~~i~~l-----p~~~ 207 (397)
.++|++|.+.++.........+...+. ..+.|++|++++|.+.. ...-...+.+|++|++++|.+... ...+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 455667777666654322222322222 23567777777777652 111122345677777777766422 1222
Q ss_pred -cCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCC-----CCccccCCCCCcEEEcCCCee
Q 045321 208 -CTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAP-----PKNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 208 -~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~-----~p~~i~~l~~L~~l~l~~~~L 270 (397)
...++|++|++++|.+.. ++..+...++|++|+++ +|.... ++..+...++|+++++++|.+
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls-~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLL-HTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECT-TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCC-CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 234667777777775443 44445666677777776 554321 223344555666666666543
No 145
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=3.8e-09 Score=97.70 Aligned_cols=240 Identities=11% Similarity=0.029 Sum_probs=137.4
Q ss_pred CCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCcccccccccCCCCCceEecCCCCCcccCc-cccC----
Q 045321 135 SGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLKHLKLNIPSLKCLPS-LLCT---- 209 (397)
Q Consensus 135 ~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~i~~lp~-~~~~---- 209 (397)
...+++.|.+.+.-.. ..+..+-..+++|++|||++|.+......-+.+..++++.+..+ ++|+ .+.+
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETT
T ss_pred hhCceeEEEEeccccH----HHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhcccccc
Confidence 4567888888765321 13344423378899999999998722211222333455555554 3332 3455
Q ss_pred ----CCCCcEEecCCcccccchhh-hhccccCcEEEecCCCCCCCCCcc-ccCCCCCcEEEcCCC---------------
Q 045321 210 ----ILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSITLPAPPKNY-SSSLKNLIFISALNP--------------- 268 (397)
Q Consensus 210 ----l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~~~~~~p~~-i~~l~~L~~l~l~~~--------------- 268 (397)
+++|+.+++.. .+..+++. +..+++|+.+++. .+....+++. +....++..+.....
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~-~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~ 173 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIR-KKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFI 173 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBC-CSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEE
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcC-CCCccccchhhhcCCCceEEecCcchhhhhccccccccccc
Confidence 89999999998 88888765 8999999999999 7765555543 555555555544331
Q ss_pred ---eee----EE-eccHHhhh----------------------------cCCCCCcEEEeecCCCeeEEEe-ccCCCCCC
Q 045321 269 ---NLS----CY-HSGVSNSL----------------------------LGLHKLECLKLVNESKLSRVVL-SKYQFPLS 311 (397)
Q Consensus 269 ---~L~----i~-~~~~~~~l----------------------------~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~ 311 (397)
.+. +. ...++..+ ..+++|+.+++.. .+++.+.- .|.. +++
T Consensus 174 ~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~~~aF~~-~~~ 251 (329)
T 3sb4_A 174 EGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIPDFTFAQ-KKY 251 (329)
T ss_dssp ESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEECTTTTTT-CTT
T ss_pred cccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceecHhhhhC-CCC
Confidence 000 00 01111111 0144555555543 22444432 3455 778
Q ss_pred ceEEEEecccCCCCCccccccCcCCc-eEEEecccccCceeEEeCCCCCCCCCEEEEecCCCcCcEEE-CCCcccccccc
Q 045321 312 LSHLSLSNTELMQDPMPIMEKLPRLQ-VLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSMYWQDEWTM-GAGAMPKLESL 389 (397)
Q Consensus 312 L~~L~L~~~~l~~~~~~~l~~l~~L~-~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~~p~L~~L 389 (397)
|+++++..+ +.......|.++++|+ .+.+.. . ...+......++++|+.+.+.+ ..++.++. ....+++|+.+
T Consensus 252 L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~--l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~l 326 (329)
T 3sb4_A 252 LLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-S--VTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLI 326 (329)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-T--CCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred CCEEECCcc-cceehHHHhhCChhccEEEEEcc-c--ceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhh
Confidence 888888776 4444455677888888 888844 2 1222222256677788888765 24565542 22345566655
Q ss_pred c
Q 045321 390 I 390 (397)
Q Consensus 390 ~ 390 (397)
.
T Consensus 327 y 327 (329)
T 3sb4_A 327 Y 327 (329)
T ss_dssp E
T ss_pred c
Confidence 3
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.71 E-value=3.1e-07 Score=87.09 Aligned_cols=190 Identities=8% Similarity=0.043 Sum_probs=93.2
Q ss_pred eeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecC
Q 045321 166 YLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGS 243 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~ 243 (397)
.|+.+.+.. .++.++ ..+.++.+|+.+++..+.+..+|.......+|+.+.+..+ +..++.. +..+++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~- 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP- 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC-
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecC-
Confidence 356666554 344333 3455666666666666666666655444566666666532 4444432 5556666666665
Q ss_pred CCCCCCCCcc-ccCCCCCcEEEcCCCeeeEEeccHHhhhcCCCCCcEEEeecCC----CeeEEEe-ccCCCCCCceEEEE
Q 045321 244 ITLPAPPKNY-SSSLKNLIFISALNPNLSCYHSGVSNSLLGLHKLECLKLVNES----KLSRVVL-SKYQFPLSLSHLSL 317 (397)
Q Consensus 244 ~~~~~~~p~~-i~~l~~L~~l~l~~~~L~i~~~~~~~~l~~l~~L~~L~l~~~~----~L~~L~l-~~~~~l~~L~~L~L 317 (397)
.. ...++.. +.+ .+|+.+.+..+ + ...-...+..+++|+.+.+.+.. .+..+.- .|.. +++|+.+++
T Consensus 235 ~~-l~~I~~~aF~~-~~L~~i~lp~~-i---~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~l~l 307 (401)
T 4fdw_A 235 EN-VSTIGQEAFRE-SGITTVKLPNG-V---TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLARFEI 307 (401)
T ss_dssp TT-CCEECTTTTTT-CCCSEEEEETT-C---CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCEECC
T ss_pred CC-ccCcccccccc-CCccEEEeCCC-c---cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCeEEe
Confidence 32 2223322 222 45555555432 1 11113345566666666665410 1112211 3334 666666666
Q ss_pred ecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEecC
Q 045321 318 SNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKSM 370 (397)
Q Consensus 318 ~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 370 (397)
..+ +.......+.++++|+.+.|..+ . ..+......++ +|+.+.+.+.
T Consensus 308 ~~~-i~~I~~~aF~~c~~L~~l~lp~~-l--~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 308 PES-IRILGQGLLGGNRKVTQLTIPAN-V--TQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp CTT-CCEECTTTTTTCCSCCEEEECTT-C--CEECTTSSSSS-CCCEEEECCS
T ss_pred CCc-eEEEhhhhhcCCCCccEEEECcc-c--cEEcHHhCCCC-CCCEEEEcCC
Confidence 632 33333444666677777777332 1 11111113444 6777776653
No 147
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.70 E-value=6.7e-07 Score=84.81 Aligned_cols=230 Identities=11% Similarity=0.085 Sum_probs=153.0
Q ss_pred CCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccc-cccCCCCCceEecCCCCCcccC-ccccCCCC
Q 045321 136 GMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPL-GLENLILLKHLKLNIPSLKCLP-SLLCTILN 212 (397)
Q Consensus 136 ~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~ 212 (397)
+..++.+.+.+.-. .+ ...|.++ .|+.+.+..+ ++.++. ++.+ .+|+.+.+.. .++.++ ..+.++.+
T Consensus 112 ~~~l~~i~ip~~i~------~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNSVK------SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTTCC------EECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEECCccC------EehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence 45666666655422 44 4444665 6999998766 665653 4555 4799999976 677665 45788999
Q ss_pred CcEEecCCcccccchhhhhccccCcEEEecCCCCCCCCCc-cccCCCCCcEEEcCCCeeeEEeccH-HhhhcCCCCCcEE
Q 045321 213 LQTLEMPSSYVDHSLEDIWMMQKLMHLNFGSITLPAPPKN-YSSSLKNLIFISALNPNLSCYHSGV-SNSLLGLHKLECL 290 (397)
Q Consensus 213 L~~L~l~~~~l~~lp~~~~~L~~L~~L~l~~~~~~~~~p~-~i~~l~~L~~l~l~~~~L~i~~~~~-~~~l~~l~~L~~L 290 (397)
|+.+++..+.+..+|...-...+|+.+.+. .. ...++. .+.++++|+.+.+..+ + ..+ ...+.. .+|+.+
T Consensus 182 L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp-~~-l~~I~~~aF~~~~~L~~l~l~~~-l----~~I~~~aF~~-~~L~~i 253 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFVYAGIEEVLLP-VT-LKEIGSQAFLKTSQLKTIEIPEN-V----STIGQEAFRE-SGITTV 253 (401)
T ss_dssp CCEEECTTSCCSEECTTTTTTCCCSEEECC-TT-CCEECTTTTTTCTTCCCEECCTT-C----CEECTTTTTT-CCCSEE
T ss_pred CCeeecCCCcceEechhhEeecccCEEEeC-Cc-hheehhhHhhCCCCCCEEecCCC-c----cCcccccccc-CCccEE
Confidence 999999999999998874446899999997 54 444443 4778899999998775 1 212 233444 688999
Q ss_pred EeecCCCeeEEEe-ccCCCCCCceEEEEecccCC-----CCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCE
Q 045321 291 KLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELM-----QDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTV 364 (397)
Q Consensus 291 ~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~-----~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~ 364 (397)
.+. .+++.+.- .|.. +++|+.+++.++... ......+.++++|+.+.|.. .. ..+......++++|+.
T Consensus 254 ~lp--~~i~~I~~~aF~~-c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i--~~I~~~aF~~c~~L~~ 327 (401)
T 4fdw_A 254 KLP--NGVTNIASRAFYY-CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SI--RILGQGLLGGNRKVTQ 327 (401)
T ss_dssp EEE--TTCCEECTTTTTT-CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TC--CEECTTTTTTCCSCCE
T ss_pred EeC--CCccEEChhHhhC-CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ce--EEEhhhhhcCCCCccE
Confidence 885 45666643 4566 999999999988653 13345678899999999953 22 2222222566789999
Q ss_pred EEEecCCCcCcEEEC-CCccccccccccc
Q 045321 365 LHLKSMYWQDEWTMG-AGAMPKLESLIVN 392 (397)
Q Consensus 365 L~l~~~~~l~~~~~~-~~~~p~L~~L~i~ 392 (397)
+.+.. ++..+... ...+ +|+.+.+.
T Consensus 328 l~lp~--~l~~I~~~aF~~~-~L~~l~l~ 353 (401)
T 4fdw_A 328 LTIPA--NVTQINFSAFNNT-GIKEVKVE 353 (401)
T ss_dssp EEECT--TCCEECTTSSSSS-CCCEEEEC
T ss_pred EEECc--cccEEcHHhCCCC-CCCEEEEc
Confidence 99854 34444211 2233 55555554
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.69 E-value=3.9e-08 Score=91.51 Aligned_cols=89 Identities=13% Similarity=0.058 Sum_probs=60.6
Q ss_pred chhHHhcCCCeeEEEEcCC-CCccccc-ccccCCCCCceEecCCCCCcccCc-cccCCCCCcEEecCCcccccchhhhhc
Q 045321 156 DCENFCEKFKYLRLLNLGY-AVLDQFP-LGLENLILLKHLKLNIPSLKCLPS-LLCTILNLQTLEMPSSYVDHSLEDIWM 232 (397)
Q Consensus 156 ~l~~~~~~l~~Lr~L~l~~-~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~l~~~~l~~lp~~~~~ 232 (397)
.++. +..+++|++|+|++ |.+..+| ..++++.+|++|+|++|.+..+|+ .++++++|++|+|++|.+..+|..+..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 3444 47777777777775 7777665 457777777777777777776654 457777777777777777777765433
Q ss_pred cccCcEEEecCCCC
Q 045321 233 MQKLMHLNFGSITL 246 (397)
Q Consensus 233 L~~L~~L~l~~~~~ 246 (397)
..+|+.|++. ++.
T Consensus 102 ~~~L~~l~l~-~N~ 114 (347)
T 2ifg_A 102 GLSLQELVLS-GNP 114 (347)
T ss_dssp SCCCCEEECC-SSC
T ss_pred cCCceEEEee-CCC
Confidence 3347777776 543
No 149
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.64 E-value=3.7e-08 Score=98.54 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=70.5
Q ss_pred cccccccchhhhHHHHhhhccCCCCCccChHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhCCceeeEecCCCCceeEEEe
Q 045321 7 RTCSVWELSFHLKACGIYLCVFPPSIKISTRQLRQLWIAEGFIQYNSEETAEHYLKELIHRGFFQVSKRRAGGTIKACYV 86 (397)
Q Consensus 7 L~lSY~~L~~~lk~cFl~~a~fp~~~~i~~~~Li~~w~a~g~i~~~~~~~~~~~~~~L~~~~ll~~~~~~~~~~~~~~~m 86 (397)
++.||+.||++.|.||+++|+||+|+.|+.+.++.+|.++ .+.++.++++|++++|++.... +....|+|
T Consensus 368 l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~ 437 (591)
T 1z6t_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYL 437 (591)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEEC
T ss_pred HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEE
Confidence 5899999999999999999999999999999999999653 3457889999999999996543 33467999
Q ss_pred CHHHHHHHHHHh
Q 045321 87 PSLVYYSLLLVA 98 (397)
Q Consensus 87 hdli~dl~~~~~ 98 (397)
|++++++++...
T Consensus 438 H~lv~~~~~~~~ 449 (591)
T 1z6t_A 438 HDLQVDFLTEKN 449 (591)
T ss_dssp CHHHHHHHHHHT
T ss_pred cHHHHHHHHhhh
Confidence 999999998773
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=3.3e-08 Score=92.94 Aligned_cols=153 Identities=14% Similarity=0.070 Sum_probs=106.8
Q ss_pred CCCeEEEEEEeCccchh----hcc---CCCCCeeEEEEeCCCCccccccchhHHhcCCCeeEEEEcCCCCccc-----cc
Q 045321 114 LANVKRCFILEDLIEFI----FLE---QSGMYLQSFLNHSSESDHLALIDCENFCEKFKYLRLLNLGYAVLDQ-----FP 181 (397)
Q Consensus 114 ~~~~r~L~l~~~~~~~~----~~~---~~~~~Lr~L~~~~~~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~~-----lp 181 (397)
...++.+.+..+..... ... ...++|++|.+.++.... ..+..+...+++|+.|++++|.+.. +.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~---~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~ 147 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP---AGLRTLLPVFLRARKLGLQLNSLGPEACKDLR 147 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH---HHHHHTHHHHHTEEEEECCSSCCCHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH---HHHHHHHHHHHhccHhhcCCCCCCHHHHHHHH
Confidence 34566777764443321 111 245799999999998753 1223444556789999999999863 22
Q ss_pred ccc-cCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccccc-----chhhhhccccCcEEEecCCCCCCC-
Q 045321 182 LGL-ENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYVDH-----SLEDIWMMQKLMHLNFGSITLPAP- 249 (397)
Q Consensus 182 ~~~-~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~-----lp~~~~~L~~L~~L~l~~~~~~~~- 249 (397)
..+ ....+|++|++++|.+.. ++..+...++|++|++++|.+.. ++..+...++|+.|+++ +|.+..
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls-~N~i~~~ 226 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVA-YNGAGDT 226 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECC-SSCCCHH
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECC-CCCCCHH
Confidence 223 246789999999999864 56667788999999999996654 45667788899999999 876542
Q ss_pred ----CCccccCCCCCcEEEcCCCee
Q 045321 250 ----PKNYSSSLKNLIFISALNPNL 270 (397)
Q Consensus 250 ----~p~~i~~l~~L~~l~l~~~~L 270 (397)
++..+...++|+++++++|.+
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHHHhCCCCCEEeccCCCC
Confidence 233455668888888888865
No 151
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.44 E-value=7.3e-08 Score=89.97 Aligned_cols=138 Identities=17% Similarity=0.139 Sum_probs=64.2
Q ss_pred chhhhhccccCcEEEecCCCCCCCCCccccCCCCCcEEEcCCCeeeEEeccHHhhhc--CCCCCcEEEeecC-------C
Q 045321 226 SLEDIWMMQKLMHLNFGSITLPAPPKNYSSSLKNLIFISALNPNLSCYHSGVSNSLL--GLHKLECLKLVNE-------S 296 (397)
Q Consensus 226 lp~~~~~L~~L~~L~l~~~~~~~~~p~~i~~l~~L~~l~l~~~~L~i~~~~~~~~l~--~l~~L~~L~l~~~-------~ 296 (397)
++..+..+++|+.|.+. ++....++. +. +.+|+.|.+..|.+ .......+. .+++|++|+++.+ .
T Consensus 164 L~~ll~~~P~L~~L~L~-g~~~l~l~~-~~-~~~L~~L~L~~~~l---~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~ 237 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIK-GTNNLSIGK-KP-RPNLKSLEIISGGL---PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG 237 (362)
T ss_dssp CHHHHHTCTTCCEEEEE-CCBTCBCCS-CB-CTTCSEEEEECSBC---CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred HHHHHhcCCCCcEEEEe-CCCCceecc-cc-CCCCcEEEEecCCC---ChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence 44445556666666666 543233333 22 55666666655533 222223332 5666666666421 1
Q ss_pred CeeEEEe--ccCCCCCCceEEEEecccCCCCCcccc---ccCcCCceEEEecccccCceeE--EeCCCCCCCCCEEEEec
Q 045321 297 KLSRVVL--SKYQFPLSLSHLSLSNTELMQDPMPIM---EKLPRLQVLKLKQNSYLGRKLA--CVGSSSFPKLTVLHLKS 369 (397)
Q Consensus 297 ~L~~L~l--~~~~~l~~L~~L~L~~~~l~~~~~~~l---~~l~~L~~L~L~~~~~~~~~~~--~~~~~~~~~L~~L~l~~ 369 (397)
.++.+.- .... +|+|++|++.+|.+.......+ ..+|+|++|+|+.|...+.... ..+...+++|+.|++++
T Consensus 238 ~~~~l~~~l~~~~-~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~ 316 (362)
T 2ra8_A 238 DMNVFRPLFSKDR-FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316 (362)
T ss_dssp CGGGTGGGSCTTT-CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCS
T ss_pred hHHHHHHHHhcCC-CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCC
Confidence 1111100 1123 5677777776665432111112 2356677777755544332110 00012356677777665
Q ss_pred C
Q 045321 370 M 370 (397)
Q Consensus 370 ~ 370 (397)
|
T Consensus 317 n 317 (362)
T 2ra8_A 317 N 317 (362)
T ss_dssp B
T ss_pred C
Confidence 5
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.26 E-value=1.3e-07 Score=78.16 Aligned_cols=84 Identities=13% Similarity=0.099 Sum_probs=44.0
Q ss_pred CceEEEEecccCCCCCccccccCcCCceEEEecccc-cCceeEEeCCCC----CCCCCEEEEecCCCcCcEE-ECCCccc
Q 045321 311 SLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSY-LGRKLACVGSSS----FPKLTVLHLKSMYWQDEWT-MGAGAMP 384 (397)
Q Consensus 311 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~~l~~~~-~~~~~~p 384 (397)
.|++|++++|.++...+..+..+++|++|+|+++.. .+..+.. +.. .++|+.|++++|++++.-. .....+|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~--L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLER--LSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHH--HHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHH--HHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence 466666666666555566666666666666655432 2222111 112 2356666666666555311 1112456
Q ss_pred cccccccccccC
Q 045321 385 KLESLIVNPCAY 396 (397)
Q Consensus 385 ~L~~L~i~~C~~ 396 (397)
+|+.|++++||+
T Consensus 140 ~L~~L~L~~c~~ 151 (176)
T 3e4g_A 140 NLKYLFLSDLPG 151 (176)
T ss_dssp TCCEEEEESCTT
T ss_pred CCCEEECCCCCC
Confidence 666666666664
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.21 E-value=1.7e-06 Score=72.75 Aligned_cols=109 Identities=13% Similarity=0.077 Sum_probs=48.4
Q ss_pred CCCCCeeEEEEeCC-CCccccccchhHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCcc-----
Q 045321 134 QSGMYLQSFLNHSS-ESDHLALIDCENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLKC----- 202 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~-~~~~~~~~~l~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~~----- 202 (397)
...+.|++|.+.++ .........+...+...+.|++|+|++|.+. .+...+....+|++|++++|.|..
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 44555555555554 4332111222222244455555555555544 122333344455555555555432
Q ss_pred cCccccCCCCCcEEec--CCccccc-----chhhhhccccCcEEEec
Q 045321 203 LPSLLCTILNLQTLEM--PSSYVDH-----SLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 203 lp~~~~~l~~L~~L~l--~~~~l~~-----lp~~~~~L~~L~~L~l~ 242 (397)
+...+...+.|++|++ ++|.+.. +...+...++|++|+++
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEecc
Confidence 3344444455555555 4443322 22333334445555554
No 154
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.16 E-value=1.7e-06 Score=72.69 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=80.2
Q ss_pred hhHHhcCCCeeEEEEcCCC-Ccc-----cccccccCCCCCceEecCCCCCcc-----cCccccCCCCCcEEecCCccccc
Q 045321 157 CENFCEKFKYLRLLNLGYA-VLD-----QFPLGLENLILLKHLKLNIPSLKC-----LPSLLCTILNLQTLEMPSSYVDH 225 (397)
Q Consensus 157 l~~~~~~l~~Lr~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~l~~ 225 (397)
+..++...+.|++|++++| .+. .+...+....+|++|++++|.+.. +...+...++|++|++++|.+..
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455588999999999999 776 355667778899999999998853 55566677889999999996654
Q ss_pred -----chhhhhccccCcEEEe--cCCCCCCC-----CCccccCCCCCcEEEcCCCe
Q 045321 226 -----SLEDIWMMQKLMHLNF--GSITLPAP-----PKNYSSSLKNLIFISALNPN 269 (397)
Q Consensus 226 -----lp~~~~~L~~L~~L~l--~~~~~~~~-----~p~~i~~l~~L~~l~l~~~~ 269 (397)
+...+...++|++|++ + ++.... +...+...++|+.+++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~-~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQ-SQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCC-SSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCC-CCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 5566777788999998 5 454321 22234445667777776663
No 155
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.13 E-value=1.9e-06 Score=80.41 Aligned_cols=153 Identities=18% Similarity=0.178 Sum_probs=72.9
Q ss_pred cccCCCCCceEecCCCCCcccCccccCCCCCcEEecCCcccccc-hhhhh--ccccCcEEEecCCC---CC-C----CCC
Q 045321 183 GLENLILLKHLKLNIPSLKCLPSLLCTILNLQTLEMPSSYVDHS-LEDIW--MMQKLMHLNFGSIT---LP-A----PPK 251 (397)
Q Consensus 183 ~~~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~l~~l-p~~~~--~L~~L~~L~l~~~~---~~-~----~~p 251 (397)
.+..+++|+.|+++++.-..+|. + .+++|++|++..|.+..- ...+. .+++|++|++. .+ .. . .+.
T Consensus 167 ll~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~-~~~~~~~~~~~~~~l~ 243 (362)
T 2ra8_A 167 VLDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY-VGVEDYGFDGDMNVFR 243 (362)
T ss_dssp HHHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE-CBCGGGTCCSCGGGTG
T ss_pred HHhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe-ccccccccchhHHHHH
Confidence 34455666666665542123333 2 256666666665533221 11222 56666666663 21 00 0 011
Q ss_pred ccc--cCCCCCcEEEcCCCeeeEEeccHHhhh---cCCCCCcEEEeecCCCeeE-----EEeccCCCCCCceEEEEeccc
Q 045321 252 NYS--SSLKNLIFISALNPNLSCYHSGVSNSL---LGLHKLECLKLVNESKLSR-----VVLSKYQFPLSLSHLSLSNTE 321 (397)
Q Consensus 252 ~~i--~~l~~L~~l~l~~~~L~i~~~~~~~~l---~~l~~L~~L~l~~~~~L~~-----L~l~~~~~l~~L~~L~L~~~~ 321 (397)
..+ +.+++|+.|.+.+|.+ .+.....+ ..+++|+.|+++.+ .+.. +.-.+.. +++|+.|+++.|.
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i---~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~-l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEE---QNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDK-IKHLKFINMKYNY 318 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTT---HHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHH-HTTCSEEECCSBB
T ss_pred HHHhcCCCCCcCEEeCCCCCC---chHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhccc-CCcceEEECCCCc
Confidence 111 2356666666665533 12122222 24567777777653 2221 1001123 6788899998887
Q ss_pred CCCCCcccccc-CcCCceEEEeccc
Q 045321 322 LMQDPMPIMEK-LPRLQVLKLKQNS 345 (397)
Q Consensus 322 l~~~~~~~l~~-l~~L~~L~L~~~~ 345 (397)
+.......+.. + ...++++.+.
T Consensus 319 i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 319 LSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp CCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCHHHHHHHHHHc--CCEEEecCCc
Confidence 65444444443 3 3456665443
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.93 E-value=1.3e-05 Score=71.11 Aligned_cols=80 Identities=24% Similarity=0.090 Sum_probs=57.7
Q ss_pred cCCCeeEEEEcCCCCcccc---cccccCCCCCceEecCCCCCcccCccccCCC--CCcEEecCCccccc-ch-------h
Q 045321 162 EKFKYLRLLNLGYAVLDQF---PLGLENLILLKHLKLNIPSLKCLPSLLCTIL--NLQTLEMPSSYVDH-SL-------E 228 (397)
Q Consensus 162 ~~l~~Lr~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~l~~~~l~~-lp-------~ 228 (397)
.+++.|++|+|++|.+..+ |..++.+++|++|+|++|.+..+ .++..+. +|++|++++|.+.. +| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 5678888888888887744 35566788888888888888766 3455555 88888888885542 33 2
Q ss_pred hhhccccCcEEEec
Q 045321 229 DIWMMQKLMHLNFG 242 (397)
Q Consensus 229 ~~~~L~~L~~L~l~ 242 (397)
.+..+++|+.|+-.
T Consensus 246 il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 246 IRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHCTTCCEESSC
T ss_pred HHHHCcccCeECCc
Confidence 36778888888654
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.80 E-value=5.2e-05 Score=62.51 Aligned_cols=77 Identities=12% Similarity=0.072 Sum_probs=35.5
Q ss_pred eeEEEEcCCCCccc-ccccccCCCCCceEecCCCC-Ccc-cCccccCC----CCCcEEecCCc-ccccch-hhhhccccC
Q 045321 166 YLRLLNLGYAVLDQ-FPLGLENLILLKHLKLNIPS-LKC-LPSLLCTI----LNLQTLEMPSS-YVDHSL-EDIWMMQKL 236 (397)
Q Consensus 166 ~Lr~L~l~~~~i~~-lp~~~~~l~~L~~L~l~~~~-i~~-lp~~~~~l----~~L~~L~l~~~-~l~~lp-~~~~~L~~L 236 (397)
.|+.||+++|.++. -...+.++++|++|++++|. ++. --..++.+ ++|++|++++| +++.-- ..+.++++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 46667776666552 12344555556666665553 331 00122222 24555555555 343311 123444555
Q ss_pred cEEEec
Q 045321 237 MHLNFG 242 (397)
Q Consensus 237 ~~L~l~ 242 (397)
++|+++
T Consensus 142 ~~L~L~ 147 (176)
T 3e4g_A 142 KYLFLS 147 (176)
T ss_dssp CEEEEE
T ss_pred CEEECC
Confidence 555555
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.77 E-value=0.00017 Score=68.00 Aligned_cols=200 Identities=15% Similarity=0.075 Sum_probs=95.9
Q ss_pred hHHhcCCCeeEEEEcCCCCccccc-ccccCCCCCceEecCCCCCcccC-ccccCCCCCcEEecCCcccccchhhhhcccc
Q 045321 158 ENFCEKFKYLRLLNLGYAVLDQFP-LGLENLILLKHLKLNIPSLKCLP-SLLCTILNLQTLEMPSSYVDHSLEDIWMMQK 235 (397)
Q Consensus 158 ~~~~~~l~~Lr~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~~ 235 (397)
...|..++.|+.+.+.++. ..++ ..+.++.+|+.+.+..+ ++.++ ..+.++..|+.+.+..+ ...+........+
T Consensus 155 ~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~-~~~i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS-LYYLGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC-ceEeehhhcccCC
Confidence 3445778888888876543 3232 45667777777777654 44433 23455666666655443 1111222222345
Q ss_pred CcEEEecCCCCCCCCC-ccccCCCCCcEEEcCCCeeeEEe-----------------ccHHhhhcCCCCCcEEEeecCCC
Q 045321 236 LMHLNFGSITLPAPPK-NYSSSLKNLIFISALNPNLSCYH-----------------SGVSNSLLGLHKLECLKLVNESK 297 (397)
Q Consensus 236 L~~L~l~~~~~~~~~p-~~i~~l~~L~~l~l~~~~L~i~~-----------------~~~~~~l~~l~~L~~L~l~~~~~ 297 (397)
|+.+.+. ... ..+. ..+..+.+|+.+.+..+...+.. ......+..+.+|+.+.+. .+
T Consensus 232 l~~i~ip-~~~-~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~~i~l~--~~ 307 (394)
T 4fs7_A 232 VKNIIIP-DSF-TELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLTEVKLL--DS 307 (394)
T ss_dssp CCEEEEC-TTC-CEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCCEEEEC--TT
T ss_pred CceEEEC-CCc-eecccccccccccceeEEcCCCcceeeccccccccccceeccCceeeccccccccccccccccc--cc
Confidence 5555554 221 1111 12334455555444433111100 0011223344555555553 23
Q ss_pred eeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321 298 LSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS 369 (397)
Q Consensus 298 L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 369 (397)
++.+.- .+.. +.+|+.++|..+ +.......+.++.+|+.+.+..+ . ..+......++++|+.+.+..
T Consensus 308 i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l--~~I~~~aF~~C~~L~~i~lp~ 375 (394)
T 4fs7_A 308 VKFIGEEAFES-CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-L--RKIGANAFQGCINLKKVELPK 375 (394)
T ss_dssp CCEECTTTTTT-CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTBTTCTTCCEEEEEG
T ss_pred cceechhhhcC-CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-c--cEehHHHhhCCCCCCEEEECC
Confidence 333321 3444 677777777543 32333445677788888777432 1 111111144566677776653
No 159
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.75 E-value=0.00079 Score=63.38 Aligned_cols=56 Identities=13% Similarity=0.071 Sum_probs=31.1
Q ss_pred CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEe
Q 045321 309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLK 368 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~ 368 (397)
+.+|+.+.+..+ +.......+.++.+|+.+.|..+ . ..+......++.+|+.+.+.
T Consensus 296 ~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v--~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 296 CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V--EEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C--CEECTTTTTTCTTCCEECCC
T ss_pred cccccccccccc-cceechhhhcCCCCCCEEEeCCc-c--cEEhHHhccCCCCCCEEEEC
Confidence 667777777654 22223344667788888877322 1 12211124456677777664
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.57 E-value=0.0018 Score=60.97 Aligned_cols=57 Identities=12% Similarity=0.124 Sum_probs=25.7
Q ss_pred CCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCCCCCCCEEEEec
Q 045321 309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSSFPKLTVLHLKS 369 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 369 (397)
+.+|+.++|..+ +....-..+.++.+|+.+.|..+-. .+......++++|+.+.+.+
T Consensus 310 c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~sv~---~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 310 CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSSVT---KIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTTCC---BCCGGGGTTCTTCCEEEESS
T ss_pred CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcccC---EEhHhHhhCCCCCCEEEECC
Confidence 556666666443 2222223455566666666632211 11111134555666666554
No 161
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.50 E-value=2.5e-05 Score=69.26 Aligned_cols=60 Identities=23% Similarity=0.214 Sum_probs=37.7
Q ss_pred cCCCCCceEecCCCCCccc---CccccCCCCCcEEecCCcccccchhhhhccc--cCcEEEecCCCC
Q 045321 185 ENLILLKHLKLNIPSLKCL---PSLLCTILNLQTLEMPSSYVDHSLEDIWMMQ--KLMHLNFGSITL 246 (397)
Q Consensus 185 ~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~l~~lp~~~~~L~--~L~~L~l~~~~~ 246 (397)
.++++|+.|+|++|.+..+ |..+..+++|++|+|++|.+..+. .+..+. +|+.|++. ++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~-~Np 231 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLD-GNS 231 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECT-TST
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEcc-CCc
Confidence 3566777777777776543 345556777777777777666552 244444 67777776 554
No 162
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.99 E-value=0.014 Score=54.64 Aligned_cols=80 Identities=10% Similarity=0.119 Sum_probs=45.7
Q ss_pred hhcCCCCCcEEEeecCCCeeEEEe-ccCCCCCCceEEEEecccCCCCCccccccCcCCceEEEecccccCceeEEeCCCC
Q 045321 280 SLLGLHKLECLKLVNESKLSRVVL-SKYQFPLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKLKQNSYLGRKLACVGSSS 358 (397)
Q Consensus 280 ~l~~l~~L~~L~l~~~~~L~~L~l-~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~ 358 (397)
.+..+.+|+.+.+. .+++.+.- .|.. +.+|+.+.+..+ +.......+.++++|+.+.+.++..... . ...
T Consensus 306 aF~~c~~L~~i~lp--~~v~~I~~~aF~~-C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~----~-~~~ 376 (394)
T 4gt6_A 306 VFAGCISLKSIDIP--EGITQILDDAFAG-CEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN----A-IST 376 (394)
T ss_dssp TTTTCTTCCEEECC--TTCCEECTTTTTT-CTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH----T-CBC
T ss_pred eecCCCCcCEEEeC--CcccEehHhHhhC-CCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh----h-hhc
Confidence 44555666666664 23444422 4556 899999999765 4444556788999999999965432211 1 334
Q ss_pred CCCCCEEEEe
Q 045321 359 FPKLTVLHLK 368 (397)
Q Consensus 359 ~~~L~~L~l~ 368 (397)
+..|+.+.+.
T Consensus 377 ~~~L~~i~i~ 386 (394)
T 4gt6_A 377 DSGLQNLPVA 386 (394)
T ss_dssp CCCC------
T ss_pred cCCCCEEEeC
Confidence 5566666554
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.73 E-value=0.067 Score=49.61 Aligned_cols=74 Identities=9% Similarity=-0.093 Sum_probs=34.5
Q ss_pred CCeEEEEEEeCccchhhcc--CCCCCeeEEEEeCCCCccccccch-hHHhcCCCeeEEEEcCCCCcccccccccCCCCCc
Q 045321 115 ANVKRCFILEDLIEFIFLE--QSGMYLQSFLNHSSESDHLALIDC-ENFCEKFKYLRLLNLGYAVLDQFPLGLENLILLK 191 (397)
Q Consensus 115 ~~~r~L~l~~~~~~~~~~~--~~~~~Lr~L~~~~~~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~~lp~~~~~l~~L~ 191 (397)
.+++.+.+. .....+... ..+.+|+++.+...-. .+ ...|..+ .|..+.+..+ ++.++.......+|+
T Consensus 46 ~~i~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~v~------~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~~L~ 116 (379)
T 4h09_A 46 DRISEVRVN-SGITSIGEANFNSCYNMTKVTVASTVT------SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGTDLD 116 (379)
T ss_dssp GGCSEEEEC-TTEEEECTTTTTTCTTCCEEEECTTCC------EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTCCCS
T ss_pred cCCEEEEeC-CCccChHHHHhhCCCCCCEEEeCCcce------EechhhhcCC-CCceEECCce-eeEeccceeccCCcc
Confidence 456666665 443333333 5666777776643311 33 3333554 3444444322 333333222223566
Q ss_pred eEecCC
Q 045321 192 HLKLNI 197 (397)
Q Consensus 192 ~L~l~~ 197 (397)
.+.+..
T Consensus 117 ~i~lp~ 122 (379)
T 4h09_A 117 DFEFPG 122 (379)
T ss_dssp EEECCT
T ss_pred cccCCC
Confidence 666654
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.46 E-value=0.052 Score=50.34 Aligned_cols=33 Identities=12% Similarity=0.163 Sum_probs=19.4
Q ss_pred CCCceEEEEecccCCCCCccccccCcCCceEEE
Q 045321 309 PLSLSHLSLSNTELMQDPMPIMEKLPRLQVLKL 341 (397)
Q Consensus 309 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L 341 (397)
+.+|+.+.+.++.+.......+.++.+|+.+.|
T Consensus 285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECCTTCCEECTTTTTTCTTCCEEEC
T ss_pred ccccccccccccccceehhhhhcCCCCCCEEEc
Confidence 566666666655443333344566666666666
No 165
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.40 E-value=0.027 Score=43.77 Aligned_cols=51 Identities=24% Similarity=0.307 Sum_probs=37.1
Q ss_pred EEEcCCCCcc--cccccccCCCCCceEecCCCCCcccCcc-ccCCCCCcEEecCCc
Q 045321 169 LLNLGYAVLD--QFPLGLENLILLKHLKLNIPSLKCLPSL-LCTILNLQTLEMPSS 221 (397)
Q Consensus 169 ~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~l~~~ 221 (397)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5677777777 7775443 4678888888888887754 466778888888776
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=95.37 E-value=0.021 Score=47.77 Aligned_cols=86 Identities=10% Similarity=0.015 Sum_probs=39.7
Q ss_pred CCCCCeeEEEEeCC-CCccccccch-hHHhcCCCeeEEEEcCCCCcc-----cccccccCCCCCceEecCCCCCc-----
Q 045321 134 QSGMYLQSFLNHSS-ESDHLALIDC-ENFCEKFKYLRLLNLGYAVLD-----QFPLGLENLILLKHLKLNIPSLK----- 201 (397)
Q Consensus 134 ~~~~~Lr~L~~~~~-~~~~~~~~~l-~~~~~~l~~Lr~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~i~----- 201 (397)
..-+.|+.|.+.++ .+.......+ ..+ ..-+.|+.|+|++|.|. .+-..+..-..|+.|+|++|.|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 34455555655543 3321111223 233 44555666666666654 22233333445566666555553
Q ss_pred ccCccccCCCCCcEEecCC
Q 045321 202 CLPSLLCTILNLQTLEMPS 220 (397)
Q Consensus 202 ~lp~~~~~l~~L~~L~l~~ 220 (397)
.+-+.+..-+.|++|++++
T Consensus 117 ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HHHHHTTTTCCCSEEECCC
T ss_pred HHHHHHhhCCceeEEECCC
Confidence 1333344444455555543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.81 E-value=0.043 Score=42.57 Aligned_cols=52 Identities=12% Similarity=0.160 Sum_probs=40.2
Q ss_pred ceEecCCCCCc--ccCccccCCCCCcEEecCCcccccchhh-hhccccCcEEEecCCC
Q 045321 191 KHLKLNIPSLK--CLPSLLCTILNLQTLEMPSSYVDHSLED-IWMMQKLMHLNFGSIT 245 (397)
Q Consensus 191 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~l~~~~l~~lp~~-~~~L~~L~~L~l~~~~ 245 (397)
..++-++.+++ .+|..+. .+|++|+|++|.+..+|.. +..+++|+.|++. ++
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~-~N 65 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLG-AN 65 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECC-SS
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEec-CC
Confidence 36777777787 8886543 4688999999988888875 6778888888888 54
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=93.75 E-value=0.074 Score=44.41 Aligned_cols=86 Identities=15% Similarity=0.172 Sum_probs=60.4
Q ss_pred hhHHhcCCCeeEEEEcCCC-Ccc-----cccccccCCCCCceEecCCCCCc-----ccCccccCCCCCcEEecCCccccc
Q 045321 157 CENFCEKFKYLRLLNLGYA-VLD-----QFPLGLENLILLKHLKLNIPSLK-----CLPSLLCTILNLQTLEMPSSYVDH 225 (397)
Q Consensus 157 l~~~~~~l~~Lr~L~l~~~-~i~-----~lp~~~~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~l~~~~l~~ 225 (397)
+..+..+-+.|+.|+|+++ .|. .+-..+..-..|+.|+|++|.|. .+.+.+..-+.|++|+|++|.+..
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3555577788999999986 665 34456666778999999998875 345556667788999998885543
Q ss_pred -----chhhhhccccCcEEEec
Q 045321 226 -----SLEDIWMMQKLMHLNFG 242 (397)
Q Consensus 226 -----lp~~~~~L~~L~~L~l~ 242 (397)
+-..+..-+.|+.|+++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~ 134 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKAD 134 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECC
T ss_pred HHHHHHHHHHhhCCceeEEECC
Confidence 33344445568888876
Done!