BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045323
(740 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 190/636 (29%), Positives = 292/636 (45%), Gaps = 66/636 (10%)
Query: 127 QGLCELVYLQEVNIDRNNLSGS--LPWCLAN-LTYLRLLDVSFNQLTENISSSPLMNLTY 183
G +L L+ +++ N++SG+ + W L++ L+ L +S N+++ ++ S +NL +
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204
Query: 184 IEELWLSNNHFQISISLEPFFNH-SKLKFFD-------GDIYAEIETSHSSLTPKFQLTS 235
++ +S+N+F I PF S L+ D GD I T + +L +
Sbjct: 205 LD---VSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-----ELKLLN 253
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP 295
IS + + P L+Y+ L+ T E P++L L L L +G
Sbjct: 254 IS----SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 309
Query: 296 FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
P L L +S+N G +P++ + L VL+++ N F+G +P S N
Sbjct: 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--- 366
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTK--LKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
L L LS+N+ G + K L+ L L N F G IP TLSNCS L L++
Sbjct: 367 -SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 425
Query: 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS- 472
S N +SG IP+ LG+LS L + + N LEG IP ++ LE L L N+++G +PS
Sbjct: 426 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485
Query: 473 CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL 532
S+ N+ + LS NRL IP W+ RL L L L+NN G +P
Sbjct: 486 LSNCTNLNWISLSN-------------NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
Query: 533 QLCWLNKLQLVDLSHNNLSGQIPHCLY----NISFNY---------REDNHDLFXXXXXX 579
+L L +DL+ N +G IP ++ I+ N+ + D
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592
Query: 580 XXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPL----HSMSGLDLSCNKLIGEIPL 635
N + + N T+ R+Y P SM LD+S N L G IP
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITS--RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 650
Query: 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695
+IG + + LNL HN+++G P ++ + LDLS N L+G+IP + L L
Sbjct: 651 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731
++ NNLSG P+ + QF TF + NP LCG PL
Sbjct: 711 LSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPL 745
Score = 102 bits (255), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 147/559 (26%), Positives = 241/559 (43%), Gaps = 85/559 (15%)
Query: 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT-PKFQLTSIS-------LF 239
+LSN+H S+S F ++ S +SL+ P LTS+ L
Sbjct: 83 FLSNSHINGSVS----------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 132
Query: 240 GHGDSGIFPKFL---YHQHDLEYVDLSHLNLT-REFPNWLLEKN-KKLKRLSLVNISLFG 294
++ FP + + LE +DLS +++ W+L +LK L++ + G
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192
Query: 295 PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWP 354
+ + NL LDVS+N IP +G+ L L+++ N +G +
Sbjct: 193 --DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAIST--- 245
Query: 355 WGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSN-CSALQGLYI 413
C L+ L +S+N G + L L+ L+L N F G+IP LS C L GL +
Sbjct: 246 --CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301
Query: 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISGSLPS 472
S N+ G +P G+ S L+++ + +N G +P ++R L++LDLS N SG LP
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361
Query: 473 CSS--PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
+ ++ + LS N GP+L +L N N+ L+ L L NNG G++
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-----------LQELYLQNNGFTGKI 410
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFXXXXXXXXXXXXXXXXX 590
P L ++L + LS N LSG IP L ++S
Sbjct: 411 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---------------------------- 442
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650
+ K N + E+ + ++ L L N L GEIP + + ++ ++LS+
Sbjct: 443 -KLRDLKLWLNMLEGE--IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 499
Query: 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVA 710
N LTGE P ++ + L LS N+ +G IP L + +L + N +G P +
Sbjct: 500 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM- 558
Query: 711 QFGTFEEDSYEGNPFLCGQ 729
F++ F+ G+
Sbjct: 559 ----FKQSGKIAANFIAGK 573
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 160/363 (44%), Gaps = 71/363 (19%)
Query: 405 CSA-LQGLYISDNNISGNIPT--RLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILD 460
CSA L L +S N++SG + T LG+ S L + + +N L+ P S +L LE+LD
Sbjct: 98 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 157
Query: 461 LSRNNISGS-------LPSCSSPFNIRRVHLSKNMLQGPL---------LGDLSYNRLNS 504
LS N+ISG+ C ++ + +S N + G + D+S N ++
Sbjct: 158 LSANSISGANVVGWVLSDGCGE---LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 214
Query: 505 NIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN 564
IP ++ L++L ++ N L G+ + +L+L+++S N G IP
Sbjct: 215 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----- 268
Query: 565 YREDNHDLFXXXXXXXXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHS-----M 619
K L + + +T E+ S +
Sbjct: 269 --------------------------------KSLQYLSLAENKFTGEIPDFLSGACDTL 296
Query: 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV-TFSHMKQVESLDLSYNNLN 678
+GLDLS N G +P G S + +L LS NN +GE P+ T M+ ++ LDLS+N +
Sbjct: 297 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356
Query: 679 GKIPPRLIELNA-LAVFSVAFNNLSGKTPDRVAQ--FGTFEEDSYEGNPFLCG-QPLLKS 734
G++P L L+A L ++ NN SG + Q T +E + N F P L +
Sbjct: 357 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416
Query: 735 CNE 737
C+E
Sbjct: 417 CSE 419
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 190/636 (29%), Positives = 292/636 (45%), Gaps = 66/636 (10%)
Query: 127 QGLCELVYLQEVNIDRNNLSGS--LPWCLAN-LTYLRLLDVSFNQLTENISSSPLMNLTY 183
G +L L+ +++ N++SG+ + W L++ L+ L +S N+++ ++ S +NL +
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 201
Query: 184 IEELWLSNNHFQISISLEPFFNH-SKLKFFD-------GDIYAEIETSHSSLTPKFQLTS 235
++ +S+N+F I PF S L+ D GD I T + +L +
Sbjct: 202 LD---VSSNNFSTGI---PFLGDCSALQHLDISGNKLSGDFSRAISTCT-----ELKLLN 250
Query: 236 ISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP 295
IS + + P L+Y+ L+ T E P++L L L L +G
Sbjct: 251 IS----SNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA 306
Query: 296 FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
P L L +S+N G +P++ + L VL+++ N F+G +P S N
Sbjct: 307 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNL--- 363
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTK--LKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
L L LS+N+ G + K L+ L L N F G IP TLSNCS L L++
Sbjct: 364 -SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHL 422
Query: 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS- 472
S N +SG IP+ LG+LS L + + N LEG IP ++ LE L L N+++G +PS
Sbjct: 423 SFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 482
Query: 473 CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL 532
S+ N+ + LS NRL IP W+ RL L L L+NN G +P
Sbjct: 483 LSNCTNLNWISLSN-------------NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 529
Query: 533 QLCWLNKLQLVDLSHNNLSGQIPHCLY----NISFNY---------REDNHDLFXXXXXX 579
+L L +DL+ N +G IP ++ I+ N+ + D
Sbjct: 530 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 589
Query: 580 XXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPL----HSMSGLDLSCNKLIGEIPL 635
N + + N T+ R+Y P SM LD+S N L G IP
Sbjct: 590 LLEFQGIRSEQLNRLSTRNPCNITS--RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK 647
Query: 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695
+IG + + LNL HN+++G P ++ + LDLS N L+G+IP + L L
Sbjct: 648 EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731
++ NNLSG P+ + QF TF + NP LCG PL
Sbjct: 708 LSNNNLSGPIPE-MGQFETFPPAKFLNNPGLCGYPL 742
Score = 102 bits (254), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 147/559 (26%), Positives = 241/559 (43%), Gaps = 85/559 (15%)
Query: 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT-PKFQLTSIS-------LF 239
+LSN+H S+S F ++ S +SL+ P LTS+ L
Sbjct: 80 FLSNSHINGSVS----------GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLN 129
Query: 240 GHGDSGIFPKFL---YHQHDLEYVDLSHLNLT-REFPNWLLEKN-KKLKRLSLVNISLFG 294
++ FP + + LE +DLS +++ W+L +LK L++ + G
Sbjct: 130 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 189
Query: 295 PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWP 354
+ + NL LDVS+N IP +G+ L L+++ N +G +
Sbjct: 190 --DVDVSRCVNLEFLDVSSNNFSTGIPF-LGDC-SALQHLDISGNKLSGDFSRAIST--- 242
Query: 355 WGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSN-CSALQGLYI 413
C L+ L +S+N G + L L+ L+L N F G+IP LS C L GL +
Sbjct: 243 --CTELKLLNISSNQFVGPI--PPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 298
Query: 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISGSLPS 472
S N+ G +P G+ S L+++ + +N G +P ++R L++LDLS N SG LP
Sbjct: 299 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 358
Query: 473 CSS--PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530
+ ++ + LS N GP+L +L N N+ L+ L L NNG G++
Sbjct: 359 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT-----------LQELYLQNNGFTGKI 407
Query: 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFXXXXXXXXXXXXXXXXX 590
P L ++L + LS N LSG IP L ++S
Sbjct: 408 PPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS---------------------------- 439
Query: 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650
+ K N + E+ + ++ L L N L GEIP + + ++ ++LS+
Sbjct: 440 -KLRDLKLWLNMLEGE--IPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSN 496
Query: 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVA 710
N LTGE P ++ + L LS N+ +G IP L + +L + N +G P +
Sbjct: 497 NRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM- 555
Query: 711 QFGTFEEDSYEGNPFLCGQ 729
F++ F+ G+
Sbjct: 556 ----FKQSGKIAANFIAGK 570
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 99/363 (27%), Positives = 160/363 (44%), Gaps = 71/363 (19%)
Query: 405 CSA-LQGLYISDNNISGNIPT--RLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILD 460
CSA L L +S N++SG + T LG+ S L + + +N L+ P S +L LE+LD
Sbjct: 95 CSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLD 154
Query: 461 LSRNNISGS-------LPSCSSPFNIRRVHLSKNMLQGPL---------LGDLSYNRLNS 504
LS N+ISG+ C ++ + +S N + G + D+S N ++
Sbjct: 155 LSANSISGANVVGWVLSDGCGE---LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFST 211
Query: 505 NIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN 564
IP ++ L++L ++ N L G+ + +L+L+++S N G IP
Sbjct: 212 GIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPL----- 265
Query: 565 YREDNHDLFXXXXXXXXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHS-----M 619
K L + + +T E+ S +
Sbjct: 266 --------------------------------KSLQYLSLAENKFTGEIPDFLSGACDTL 293
Query: 620 SGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV-TFSHMKQVESLDLSYNNLN 678
+GLDLS N G +P G S + +L LS NN +GE P+ T M+ ++ LDLS+N +
Sbjct: 294 TGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 353
Query: 679 GKIPPRLIELNA-LAVFSVAFNNLSGKTPDRVAQ--FGTFEEDSYEGNPFLCG-QPLLKS 734
G++P L L+A L ++ NN SG + Q T +E + N F P L +
Sbjct: 354 GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 413
Query: 735 CNE 737
C+E
Sbjct: 414 CSE 416
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 79/315 (25%), Positives = 126/315 (40%), Gaps = 78/315 (24%)
Query: 422 IPTRLGNLSFLDAIMMPN-NRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR 480
IP+ L NL +L+ + + N L GPIP A +L L L ++ N+SG+
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----------- 116
Query: 481 RVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540
IPD+++++ L L + N L G +P + L L
Sbjct: 117 -------------------------IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNL 151
Query: 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFXXXXXXXXXXXXXXXXXTNYHNHKYLT 600
+ N +SG IP D++ F K T
Sbjct: 152 VGITFDGNRISGAIP------------DSYGSF----------------------SKLFT 177
Query: 601 NFTTKQRLYTYEVQPLHS---MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE- 656
+ T + T ++ P + ++ +DLS N L G+ + G ++L+ N+L +
Sbjct: 178 SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL 237
Query: 657 SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFE 716
V S K + LDL N + G +P L +L L +V+FNNL G+ P + F+
Sbjct: 238 GKVGLS--KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294
Query: 717 EDSYEGNPFLCGQPL 731
+Y N LCG PL
Sbjct: 295 VSAYANNKCLCGSPL 309
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 69/224 (30%), Positives = 100/224 (44%), Gaps = 17/224 (7%)
Query: 345 IPSSFGNTWPWGCFYLEYLVLSN-NSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLS 403
IPSS N YL +L + N+L G + LT+L L + + G IP LS
Sbjct: 68 IPSSLANLP-----YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS 122
Query: 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHL-EILDLS 462
L L S N +SG +P + +L L I NR+ G IP ++ L + +S
Sbjct: 123 QIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP-------- 514
RN ++G +P + N+ V LS+NML+G ++ I N L
Sbjct: 183 RNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL 242
Query: 515 --QLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556
L L L NN + G +P L L L +++S NNL G+IP
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 64/235 (27%), Positives = 104/235 (44%), Gaps = 17/235 (7%)
Query: 245 GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHK 304
G P + L Y+ ++H N++ P++L + K L L +L G P I
Sbjct: 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLP 149
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
NL + N++ G IP G + ++ N G IP +F N L ++
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN------LNLAFVD 203
Query: 365 LSNNSLQGQ---LFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421
LS N L+G LF + N ++++L N D+ K + L GL + +N I G
Sbjct: 204 LSRNMLEGDASVLFGSDKN---TQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGT 259
Query: 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN-ISGS-LPSCS 474
+P L L FL ++ + N L G IP L+ ++ + N + GS LP+C+
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLPACT 313
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 93/359 (25%), Positives = 140/359 (38%), Gaps = 92/359 (25%)
Query: 6 EGCLEQEGYALLKLKHDFFN----------NHCC--QWACVECNTTTG--KVISLDLDGT 51
E C Q+ ALL++K D N CC W V C+T T +V +LDL G
Sbjct: 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSG- 59
Query: 52 RKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMAXXX 111
L + Y S + NL Y N + +N + +A
Sbjct: 60 --LNLPKPYPIPS----------------SLANLPYLNFLYIGGINNLVGPIPPAIA--- 98
Query: 112 XXXXXXXXXXGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE 171
+L L + I N+SG++P L+ + L LD S+N L+
Sbjct: 99 -------------------KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG 139
Query: 172 NI--SSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD-IYAEIETSHSSLT 228
+ S S L NL I FDG+ I I S+ S +
Sbjct: 140 TLPPSISSLPNLVGIT--------------------------FDGNRISGAIPDSYGSFS 173
Query: 229 PKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV 288
F TS+++ + +G P + +L +VDLS N+ + L +K +++ L
Sbjct: 174 KLF--TSMTISRNRLTGKIPP-TFANLNLAFVDLSR-NMLEGDASVLFGSDKNTQKIHLA 229
Query: 289 NISLFGPFPL-PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346
SL F L + KNL LD+ NN++ G +P + + L L LNV+ N G IP
Sbjct: 230 KNSL--AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP 285
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 5/115 (4%)
Query: 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMKQVE 668
TY V L +SGL+L IP + L ++ L + NNL G P + + Q+
Sbjct: 49 TYRVNNLD-LSGLNLPKPY---PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104
Query: 669 SLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723
L +++ N++G IP L ++ L ++N LSG P ++ +++GN
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGN 159
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/245 (25%), Positives = 102/245 (41%), Gaps = 21/245 (8%)
Query: 76 DLSILNFKNLEYFNMD---FCTAFSNSFLQMSELMAXXXXXXXXXXXXXGTILDQGLCEL 132
D S K LEY NMD + SN+F + L++ T+ ++ L
Sbjct: 322 DFSFQWLKYLEYLNMDDNNIPSTKSNTF---TGLVSLKYLSLSKTFTSLQTLTNETFVSL 378
Query: 133 VY--LQEVNIDRNNLS----GSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186
+ L +N+ +N++S G+ W L LR+LD+ N++ + +S L I E
Sbjct: 379 AHSPLLTLNLTKNHISKIANGTFSW----LGQLRILDLGLNEIEQKLSGQEWRGLRNIFE 434
Query: 187 LWLS-NNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG 245
++LS N + Q+S S + ++ S S P LT + L + +
Sbjct: 435 IYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPSPFRPLRNLTILDLSNNNIAN 494
Query: 246 IFPKFLYHQHDLEYVDLSHLNLTREF----PNWLLEKNKKLKRLSLVNISLFGPFPLPIH 301
I L +LE +D H NL R + P + K L L ++N+ G +P+
Sbjct: 495 INEDLLEGLENLEILDFQHNNLARLWKRANPGGPVNFLKGLSHLHILNLESNGLDEIPVG 554
Query: 302 CHKNL 306
KNL
Sbjct: 555 VFKNL 559
Score = 33.5 bits (75), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFN 699
S I LNL+HN L P F+ Q+ LD +N++ K+ P L + L L V ++ N
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSI-SKLEPELCQILPLLKVLNLQHN 83
Query: 700 NLSGKTPDRVAQFGT 714
LS + D+ F T
Sbjct: 84 ELS-QISDQTFVFCT 97
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 79/280 (28%), Positives = 120/280 (42%), Gaps = 53/280 (18%)
Query: 323 EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NL 381
+ E L +L VLN+A N N +F +G L+ L LS N L G+L+S F L
Sbjct: 284 RVFETLKDLKVLNLAYNKINKIADEAF-----YGLDNLQVLNLSYN-LLGELYSSNFYGL 337
Query: 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN--------------ISGNIPTRLG 427
K+ ++L NH +T LQ L + DN +SGN L
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397
Query: 428 NLSF-LDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI---SGSLPSCSSPFNIRRV 482
++ + I + NRLE I ++ HL+IL L++N SG +P ++ ++
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQL 456
Query: 483 HLSKNMLQ----GPLLGD------------LSYNRLNSNIPDWMNRLPQLRYLILANNGL 526
L +NMLQ L D L++N LNS P + L LR L L +N L
Sbjct: 457 FLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516
Query: 527 ----EGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562
++P L+++D+S N L P ++S
Sbjct: 517 TVLSHNDLP------ANLEILDISRNQLLAPNPDVFVSLS 550
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 36/92 (39%), Gaps = 13/92 (14%)
Query: 640 LSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL----NGKIPPRLIELNALAVFS 695
LS + L L+HN L P FSH+ + L L+ N L + +P L +
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPAN------LEILD 532
Query: 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727
++ N L PD + N F+C
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLD---ITHNKFIC 561
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 3/136 (2%)
Query: 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE--IPLQIGELSRIHTLNLSHNNL 653
H Y+ K L ++ L ++ LDLS N + LQ+ LS + TLNLSHN
Sbjct: 326 HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEP 385
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLSGKTPDRVAQF 712
G F Q+E LDL++ L+ P + L+ L V ++ + L +A
Sbjct: 386 LGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGL 445
Query: 713 GTFEEDSYEGNPFLCG 728
+ +GN F G
Sbjct: 446 PVLRHLNLKGNHFQDG 461
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 73/179 (40%), Gaps = 18/179 (10%)
Query: 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWL-- 189
L +LQ +N+ N G L LLD++F +L N SP NL +++ L L
Sbjct: 372 LSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTY 431
Query: 190 -----SNNHFQISISLEPFFNHSKLK---FFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241
SN H + P H LK F DG I T + L L + L
Sbjct: 432 CFLDTSNQHLLAGL---PVLRHLNLKGNHFQDGTI-----TKTNLLQTVGSLEVLILSSC 483
Query: 242 GDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300
G I + + + +VDLSH +LT + + L L+ +I++ P LPI
Sbjct: 484 GLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGIYLNLAANSINIISPRLLPI 542
Score = 37.0 bits (84), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 134/314 (42%), Gaps = 33/314 (10%)
Query: 384 LKRLNLDGNHFIGDIPKTLSNC-SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
++ LNL + F DI T C + LQ L ++ ++ G +P+ + L+ L +++ N
Sbjct: 253 VESLNLQEHRF-SDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHF 310
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG-----DL 497
+ CQ+ L+ I G N++++HL L+ LG DL
Sbjct: 311 D-----QLCQISAANFPSLTHLYIRG---------NVKKLHLGVGCLEK--LGNLQTLDL 354
Query: 498 SYNRLNSN--IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555
S+N + ++ + L L+ L L++N G +L+L+DL+ L P
Sbjct: 355 SHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
Query: 556 HCLY-NISFNYREDNHDLFXXXXXXXXXXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQ 614
+ N+ F + F N + + TK L +Q
Sbjct: 415 QSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNL----LQ 470
Query: 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674
+ S+ L LS L+ L ++ ++LSHN+LT +S + SH+K + L+L+
Sbjct: 471 TVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLSHLKGI-YLNLAA 529
Query: 675 NNLNGKIPPRLIEL 688
N++N I PRL+ +
Sbjct: 530 NSIN-IISPRLLPI 542
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 44/173 (25%), Positives = 70/173 (40%), Gaps = 34/173 (19%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP-TRLGNLSFLDAIMMP 438
NL+ L+ LNL N +G + C L+ L ++ + N P + NL FL + +
Sbjct: 371 NLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNL- 429
Query: 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLS 498
+C LD S ++ LP +R ++L N Q G ++
Sbjct: 430 ----------TYC------FLDTSNQHLLAGLPV------LRHLNLKGNHFQD---GTIT 464
Query: 499 YNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551
L + + L LIL++ GL L K+ VDLSHN+L+
Sbjct: 465 KTNL-------LQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLT 510
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 141/340 (41%), Gaps = 69/340 (20%)
Query: 355 WGCF-YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413
+ CF L+ L L+ L+G L S L LK+L L NHF + +N +L LYI
Sbjct: 271 FQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYI 329
Query: 414 SDN----NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLR-----HLEILDLSRN 464
N ++ +LGNL LD + +N +E S C L+ HL+ L+LS N
Sbjct: 330 RGNVKKLHLGVGCLEKLGNLQTLD---LSHNDIEA---SDCCSLQLKNLSHLQTLNLSHN 383
Query: 465 NISGSLPSCSSPFNIRRVHLSKNMLQGPLLG--DLSYNRLNSNIPDWMNRLPQLRYLILA 522
P ++ S+ + P L DL++ RL+ N P + L +L +
Sbjct: 384 ----------EPLGLQ----SQAFKECPQLELLDLAFTRLHINAPQ--SPFQNLHFLQVL 427
Query: 523 NNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY-NISFNYREDNHDLFXXXXXXXX 581
N L C+L D S+ +L +P + N+ N+ +D
Sbjct: 428 N--------LTYCFL------DTSNQHLLAGLPVLRHLNLKGNHFQDG------------ 461
Query: 582 XXXXXXXXXTNYHNHKYLTNFTTKQRLYTYEVQPLHS---MSGLDLSCNKLIGEIPLQIG 638
+ + L + L + + Q HS MS +DLS N L + +
Sbjct: 462 -TITKTNLLQTVGSLEVL--ILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTCDSIDSLS 518
Query: 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678
L I+ LNL+ N++ SP + Q +++LS+N L+
Sbjct: 519 HLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLD 557
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 350 GNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQ 409
G+ P C L+ +V +N +G + + L LDGN F +PK LSN L
Sbjct: 1 GSRCPTECTCLDTVVRCSN--KGLKVLPKGIPRDVTELYLDGNQFTL-VPKELSNYKHLT 57
Query: 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNIS 467
+ +S+N IS N++ L +++ NRL P F L+ L +L L N+IS
Sbjct: 58 LIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 54/105 (51%), Gaps = 8/105 (7%)
Query: 633 IPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNAL 691
+P ++ + ++LS+N ++ S +FS+M Q+ +L LSYN L IPPR + L +L
Sbjct: 46 VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSL 104
Query: 692 AVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCN 736
+ S+ N++S V G F + S + + PL CN
Sbjct: 105 RLLSLHGNDIS------VVPEGAFNDLSALSHLAIGANPLYCDCN 143
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 98/381 (25%), Positives = 160/381 (41%), Gaps = 84/381 (22%)
Query: 127 QGLCELVYLQEVNIDRN---NLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTY 183
+GLCE+ ++ +N+ ++ N+S + C + L L L ++L S L+ L+
Sbjct: 249 EGLCEM-SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSEL-----PSGLVGLST 302
Query: 184 IEELWLSNNHF----QISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLF 239
+++L LS N F QIS S P H +K G+ T + +L
Sbjct: 303 LKKLVLSANKFENLCQISASNFPSLTHLSIK---GN------------TKRLEL------ 341
Query: 240 GHGDSGIFPKFLYHQHDLEYVDLSHLNL-TREFPNWLLEKNKKLKRLSLVNISLFGPFPL 298
G G L + +L +DLSH ++ T + N L + L L +N+S P L
Sbjct: 342 GTG-------CLENLENLRELDLSHDDIETSDCCNLQL---RNLSHLQSLNLSYNEPLSL 391
Query: 299 PIHCHK---NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPW 355
K L +LD++ +L+ + L L VLN++ + + S
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS----------- 440
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHF-IGDIPKT--LSNCSALQGLY 412
QLF L L+ LNL GNHF G+I KT L L+ L
Sbjct: 441 ---------------SEQLFD---GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482
Query: 413 ISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
+S ++S +L ++ + + +NRL A L+ + L+L+ N+IS LPS
Sbjct: 483 LSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541
Query: 473 CSSPFNIRRVHLSKNMLQGPL 493
+ +R + N+ Q PL
Sbjct: 542 LLPILSQQR---TINLRQNPL 559
Score = 32.7 bits (73), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 91/364 (25%), Positives = 152/364 (41%), Gaps = 44/364 (12%)
Query: 177 PLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSI 236
PL N +E L+L +NH SI L F KLK D A S ++ Q T++
Sbjct: 124 PLHNQKTLESLYLGSNHIS-SIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182
Query: 237 SLFGHGD--SGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG 294
SL +G+ +GI P + LN LL K LK ++ ++ L G
Sbjct: 183 SLNLNGNDIAGIEPG------AFDSAVFQSLNFGG--TQNLLVIFKGLKNSTIQSLWL-G 233
Query: 295 PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV-LPNLVVLNVATNAFNG-------SIP 346
F +++ D+S +G + + + L N+++N F+ +
Sbjct: 234 TF-------EDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286
Query: 347 SSFGNTWPWGCF---YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI-PKTL 402
++ + P G L+ LVLS N + N L L++ GN ++ L
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346
Query: 403 SNCSALQGLYISDNNI--SGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
N L+ L +S ++I S +L NLS L ++ + N AF + LE+LD
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406
Query: 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLI 520
L+ + + SPF + +HL K + +LS++ L+ + + LP L++L
Sbjct: 407 LAFTRL--KVKDAQSPF--QNLHLLKVL-------NLSHSLLDISSEQLFDGLPALQHLN 455
Query: 521 LANN 524
L N
Sbjct: 456 LQGN 459
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 603 TTKQRLYTYEVQPLHSMSGLDLSCNKLIGE--IPLQIGELSRIHTLNLSHNNLTGESPVT 660
T + L T ++ L ++ LDLS + + LQ+ LS + +LNLS+N
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEA 395
Query: 661 FSHMKQVESLDLSYNNLNGK 680
F Q+E LDL++ L K
Sbjct: 396 FKECPQLELLDLAFTRLKVK 415
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
++P + NL +L + +NA G ++F G LE L LS+N+ +
Sbjct: 45 YVPAASFQSCRNLTILWLHSNALAGIDAAAFT-----GLTLLEQLDLSDNAQLRVVDPTT 99
Query: 379 FN-LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG---NIPTRLGNLSFLDA 434
F L L L+LD P +ALQ LY+ DNN+ N LGNL+ L
Sbjct: 100 FRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHL-- 157
Query: 435 IMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP 471
+ NR+ AF L L+ L L +N+++ P
Sbjct: 158 -FLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHP 193
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.4 bits (85), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 91/209 (43%), Gaps = 43/209 (20%)
Query: 362 YLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI---PKTL---------------- 402
Y +SN LQGQL ++F+ + L + + D+ P++
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVS 310
Query: 403 ----------SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLE--GPIPSAF 450
S S L S+N ++ + G+L+ L+ +++ N+L+ I
Sbjct: 311 GTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT 370
Query: 451 CQLRHLEILDLSRNNIS--GSLPSCSSPFNIRRVHLSKNMLQGPLLG---------DLSY 499
Q++ L+ LD+S+N++S CS ++ +++S N+L + DL
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHS 430
Query: 500 NRLNSNIPDWMNRLPQLRYLILANNGLEG 528
N++ S IP + +L L+ L +A+N L+
Sbjct: 431 NKIKS-IPKQVVKLEALQELNVASNQLKS 458
Score = 35.8 bits (81), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 41/142 (28%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
+PK LS + + L IS N IS + + +LS L +++ +NR++ S F + LE
Sbjct: 15 VPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELE 72
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNS-NIPDWMNRLPQL 516
LDLS N + SC N++ + DLS+N ++ I + QL
Sbjct: 73 YLDLSHNKLVK--ISCHPTVNLKHL-------------DLSFNAFDALPICKEFGNMSQL 117
Query: 517 RYLILANNGLEGEMPLQLCWLN 538
++L L+ LE L + LN
Sbjct: 118 KFLGLSTTHLEKSSVLPIAHLN 139
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRAELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++NNL+ ++P L N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLN 169
Score = 36.6 bits (83), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L R L + + G P+ L LD+S+N+LQ +P+ +G+ LP L VL+V+ N
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
+ P G +L+G L +L+ L L GN P
Sbjct: 113 T---------SLPLG------------ALRG--------LGELQELYLKGNELKTLPPGL 143
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450
L+ L+ L +++NN++ L L LD +++ N L IP F
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSN 191
L L +++ N L SLP L L +LDVSFN+LT ++ L L ++EL+L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 192 NHFQ 195
N +
Sbjct: 134 NELK 137
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRAELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++NNL+ ++P L N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLN 169
Score = 36.2 bits (82), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L R L + + G P+ L LD+S+N+LQ +P+ +G+ LP L VL+V+ N
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
+ P G +L+G L +L+ L L GN P
Sbjct: 113 T---------SLPLG------------ALRG--------LGELQELYLKGNELKTLPPGL 143
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450
L+ L+ L +++NN++ L L LD +++ N L IP F
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSN 191
L L +++ N L SLP L L +LDVSFN+LT ++ L L ++EL+L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 192 NHFQ 195
N +
Sbjct: 134 NELK 137
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 36.6 bits (83), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRAELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++NNL+ ++P L N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLN 169
Score = 36.6 bits (83), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L R L + + G P+ L LD+S+N+LQ +P+ +G+ LP L VL+V+ N
Sbjct: 62 LDRAELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
+ P G +L+G L +L+ L L GN P
Sbjct: 113 T---------SLPLG------------ALRG--------LGELQELYLKGNELKTLPPGL 143
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450
L+ L+ L +++NN++ L L LD +++ N L IP F
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 132 LVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSN 191
L L +++ N L SLP L L +LDVSFN+LT ++ L L ++EL+L
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKG 133
Query: 192 NHFQ 195
N +
Sbjct: 134 NELK 137
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L R L + + G P+ L LD+S+N+LQ +P+ +G+ LP L VL+V+ N
Sbjct: 62 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 112
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
+ P G +L+G L +L+ L L GN P
Sbjct: 113 T---------SLPLG------------ALRG--------LGELQELYLKGNELKTLPPGL 143
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450
L+ L+ L +++NN++ L L LD +++ N L IP F
Sbjct: 144 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 191
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRLT--------QL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++NNL+ ++P L N
Sbjct: 150 LEKLSLANNNLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 116 PLGALRGLGELQELYLKGNELK 137
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 36.6 bits (83), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 123 TILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182
TI L EL+ LQE+ + L+ P+ L YLR+L+VS NQLT + S ++
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVG 320
Query: 183 YIEELWLSNN 192
+E L L +N
Sbjct: 321 NLETLILDSN 330
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 74/162 (45%), Gaps = 14/162 (8%)
Query: 134 YLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNH 193
+L+E+ ++ N +S P NL LR L + N+L + I L+ + +L +S N
Sbjct: 57 HLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENK 115
Query: 194 FQISIS--LEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFL 251
I + + +N L+ D D+ + SH + + L ++L + I + L
Sbjct: 116 IVILLDYMFQDLYNLKSLEVGDNDL---VYISHRAFSGLNSLEQLTLEKCNLTSIPTEAL 172
Query: 252 YHQHDLEYVDLSHLNL--TREFPNWLLEKNKKLKRLSLVNIS 291
H H L + L HLN+ R++ K+L RL ++ IS
Sbjct: 173 SHLHGLIVLRLRHLNINAIRDY------SFKRLYRLKVLEIS 208
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 36.2 bits (82), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 46 TFSLATLMPYTRLT--------QL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 90
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 91 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 150
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++NNL+ ++P L N
Sbjct: 151 LEKLSLANNNLT-ELPAGLLN 170
Score = 36.2 bits (82), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 73/169 (43%), Gaps = 39/169 (23%)
Query: 282 LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
L R L + + G P+ L LD+S+N+LQ +P+ +G+ LP L VL+V+ N
Sbjct: 63 LDRCELTKLQVDGTLPV-------LGTLDLSHNQLQS-LPL-LGQTLPALTVLDVSFNRL 113
Query: 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKT 401
+ P G +L+G L +L+ L L GN P
Sbjct: 114 T---------SLPLG------------ALRG--------LGELQELYLKGNELKTLPPGL 144
Query: 402 LSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450
L+ L+ L +++NN++ L L LD +++ N L IP F
Sbjct: 145 LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKGF 192
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 59 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 116
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 117 PLGALRGLGELQELYLKGNELK 138
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 281 KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340
KL+RL L L LP K L+ L V N++ + + L ++V+ + TN
Sbjct: 101 KLERLYLSKNQLKE---LPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156
Query: 341 FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK 400
S N G L Y+ +++ ++ +LT+L +LDGN
Sbjct: 157 LKSS---GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAA 210
Query: 401 TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
+L + L L +S N+IS L N L + + NN+L +P ++++++
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY 269
Query: 461 LSRNNIS--GSLPSCSSPFNIRRVHLS 485
L NNIS GS C +N ++ S
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYS 296
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
+PK L +AL L + +N I+ NL L +++ NN++ P AF L LE
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 458 ILDLSRNNIS 467
L LS+N +
Sbjct: 104 RLYLSKNQLK 113
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 53/207 (25%), Positives = 89/207 (42%), Gaps = 13/207 (6%)
Query: 281 KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340
KL+RL L L LP K L+ L V N++ + + L ++V+ + TN
Sbjct: 101 KLERLYLSKNQLKE---LPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNP 156
Query: 341 FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK 400
S N G L Y+ +++ ++ +LT+L +LDGN
Sbjct: 157 LKSS---GIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAA 210
Query: 401 TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460
+L + L L +S N+IS L N L + + NN+L +P ++++++
Sbjct: 211 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVY 269
Query: 461 LSRNNIS--GSLPSCSSPFNIRRVHLS 485
L NNIS GS C +N ++ S
Sbjct: 270 LHNNNISAIGSNDFCPPGYNTKKASYS 296
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
+PK L +AL L + +N I+ NL L +++ NN++ P AF L LE
Sbjct: 46 VPKDLPPDTAL--LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 103
Query: 458 ILDLSRNNIS 467
L LS+N +
Sbjct: 104 RLYLSKNQLK 113
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS-NNH 193
L +N+ +N +S + L +L +LD+ N++ + ++ L I E++LS N +
Sbjct: 383 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 442
Query: 194 FQI---SISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
Q+ S +L P L+ +++S S P LT + L + + I
Sbjct: 443 LQLTRNSFALVPSLQRLMLRRV---ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 499
Query: 251 LYHQHDLEYVDLSHLNLTREF-------PNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH 303
L LE +DL H NL R + P + L K L L ++N+ G +P+
Sbjct: 500 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLESNGFDEIPVEVF 556
Query: 304 KN---LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
K+ L+++D+ N L +P + +L LN+ N FG
Sbjct: 557 KDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605
Score = 34.3 bits (77), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 79/304 (25%), Positives = 120/304 (39%), Gaps = 56/304 (18%)
Query: 306 LRVLDVSNNKLQGHIPIE-IGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEY-- 362
+R L +SN++L +G NL +L+++ N N SF F+LEY
Sbjct: 224 IRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNN 283
Query: 363 -LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK----TLSNCSALQGLYISDNN 417
L ++SL G + NL KR + + +PK + L+ L + DN+
Sbjct: 284 IQHLFSHSLHGLFNVRYLNL---KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340
Query: 418 ISG---NIPTRLGNLSFLD-------------------------AIMMPNNRLEGPIPSA 449
I G N+ T L NL +L + + N++ A
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400
Query: 450 FCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNM--------------LQGPL 493
F L HLE+LDL N I L NI ++LS N LQ +
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460
Query: 494 LGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQ 553
L ++ ++S+ P L L L L+NN + L L KL+++DL HNNL+
Sbjct: 461 LRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519
Query: 554 IPHC 557
H
Sbjct: 520 WKHA 523
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700
+ I LNL+HN L F+ Q+ SLD+ +N ++ P +L L V ++ N
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 701 LSGKTPDRVAQFGT 714
LS + D+ F T
Sbjct: 85 LS-QLSDKTFAFCT 97
>pdb|1WWL|A Chain A, Crystal Structure Of Cd14
pdb|1WWL|B Chain B, Crystal Structure Of Cd14
Length = 312
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 64/156 (41%), Gaps = 39/156 (25%)
Query: 601 NFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE-------IPLQIGELSRIHTLNLSHNNL 653
NF+ +Q V+ ++S LDLS N +GE PL+ L + N
Sbjct: 163 NFSCEQ------VRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 654 TGESPVTFSHMKQVESLDLSYNNLNGKI-------PPRLIELN---------------AL 691
+G + Q++ LDLS+N+L P +L LN L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276
Query: 692 AVFSVAFNNLS-GKTPDRVAQFGTFEEDSYEGNPFL 726
+V +++N L +PD + Q G S +GNPFL
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGNL---SLKGNPFL 309
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 64/136 (47%), Gaps = 21/136 (15%)
Query: 407 ALQGLYISDNNISG--NIPTRLGNLSF--LDAIMMPNNRLEGP--IPSAFCQLR-HLEIL 459
AL L +SDN G + + L L F L + + N +E P + SA R L+ L
Sbjct: 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGL 233
Query: 460 DLSRNNI--SGSLPSCSSPFNIRRVHLSKNMLQGPLLG--------DLSYNRLNSNI-PD 508
DLS N++ + PSC P + ++LS L+ G DLSYNRL+ N PD
Sbjct: 234 DLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPD 293
Query: 509 WMNRLPQLRYLILANN 524
LPQ+ L L N
Sbjct: 294 ---ELPQVGNLSLKGN 306
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 35.4 bits (80), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 69/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++N+L+ ++P L N
Sbjct: 150 LEKLSLANNDLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 11/75 (14%)
Query: 130 CELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
CEL LQ +++ N L SLP L L +LDVSFN+LT ++ L
Sbjct: 65 CELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRG 122
Query: 181 LTYIEELWLSNNHFQ 195
L ++EL+L N +
Sbjct: 123 LGELQELYLKGNELK 137
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS-NNH 193
L +N+ +N +S + L +L +LD+ N++ + ++ L I E++LS N +
Sbjct: 393 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 452
Query: 194 FQI---SISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
Q+ S +L P L+ +++S S P LT + L + + I
Sbjct: 453 LQLTRNSFALVPSLQRLMLRRV---ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 509
Query: 251 LYHQHDLEYVDLSHLNLTREF-------PNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH 303
L LE +DL H NL R + P + L K L L ++N+ G +P+
Sbjct: 510 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLESNGFDEIPVEVF 566
Query: 304 KN---LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
K+ L+++D+ N L +P + +L LN+ N FG
Sbjct: 567 KDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG 615
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 122/308 (39%), Gaps = 56/308 (18%)
Query: 302 CHKNLRVLDVSNNKLQGHIPIE-IGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYL 360
+ ++R L +SN++L +G NL +L+++ N N SF F+L
Sbjct: 230 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 289
Query: 361 EY---LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK----TLSNCSALQGLYI 413
EY L ++SL G + NL KR + + +PK + L+ L +
Sbjct: 290 EYNNIQHLFSHSLHGLFNVRYLNL---KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 346
Query: 414 SDNNISG---NIPTRLGNLSFLD-------------------------AIMMPNNRLEGP 445
DN+I G N+ T L NL +L + + N++
Sbjct: 347 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 406
Query: 446 IPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNM--------------L 489
AF L HLE+LDL N I L NI ++LS N L
Sbjct: 407 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 466
Query: 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549
Q +L ++ ++S+ P L L L L+NN + L L KL+++DL HNN
Sbjct: 467 QRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 525
Query: 550 LSGQIPHC 557
L+ H
Sbjct: 526 LARLWKHA 533
Score = 33.9 bits (76), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700
+ I LNL+HN L F+ Q+ SLD+ +N ++ P +L L V ++ N
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 701 LSGKTPDRVAQFGT 714
LS + D+ F T
Sbjct: 95 LS-QLSDKTFAFCT 107
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 98/230 (42%), Gaps = 21/230 (9%)
Query: 135 LQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS-NNH 193
L +N+ +N +S + L +L +LD+ N++ + ++ L I E++LS N +
Sbjct: 388 LHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY 447
Query: 194 FQI---SISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKF 250
Q+ S +L P L+ +++S S P LT + L + + I
Sbjct: 448 LQLTRNSFALVPSLQRLMLRRV---ALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDM 504
Query: 251 LYHQHDLEYVDLSHLNLTREF-------PNWLLEKNKKLKRLSLVNISLFGPFPLPIHCH 303
L LE +DL H NL R + P + L K L L ++N+ G +P+
Sbjct: 505 LEGLEKLEILDLQHNNLARLWKHANPGGPIYFL---KGLSHLHILNLESNGFDEIPVEVF 561
Query: 304 KN---LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFG 350
K+ L+++D+ N L +P + +L LN+ N FG
Sbjct: 562 KDLFELKIIDLGLNNLNT-LPASVFNNQVSLKSLNLQKNLITSVEKKVFG 610
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 79/308 (25%), Positives = 122/308 (39%), Gaps = 56/308 (18%)
Query: 302 CHKNLRVLDVSNNKLQGHIPIE-IGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYL 360
+ ++R L +SN++L +G NL +L+++ N N SF F+L
Sbjct: 225 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFL 284
Query: 361 EY---LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPK----TLSNCSALQGLYI 413
EY L ++SL G + NL KR + + +PK + L+ L +
Sbjct: 285 EYNNIQHLFSHSLHGLFNVRYLNL---KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNM 341
Query: 414 SDNNISG---NIPTRLGNLSFLD-------------------------AIMMPNNRLEGP 445
DN+I G N+ T L NL +L + + N++
Sbjct: 342 EDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKI 401
Query: 446 IPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNM--------------L 489
AF L HLE+LDL N I L NI ++LS N L
Sbjct: 402 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSL 461
Query: 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549
Q +L ++ ++S+ P L L L L+NN + L L KL+++DL HNN
Sbjct: 462 QRLMLRRVALKNVDSS-PSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNN 520
Query: 550 LSGQIPHC 557
L+ H
Sbjct: 521 LARLWKHA 528
Score = 33.9 bits (76), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700
+ I LNL+HN L F+ Q+ SLD+ +N ++ P +L L V ++ N
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 701 LSGKTPDRVAQFGT 714
LS + D+ F T
Sbjct: 90 LS-QLSDKTFAFCT 102
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 35.0 bits (79), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS 190
+LV L E+ +DRN L P +LT L L + +N+L +++ LT ++EL L
Sbjct: 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNEL-QSLPKGVFDKLTSLKELRLY 165
Query: 191 NNHFQ 195
NN +
Sbjct: 166 NNQLK 170
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 74/176 (42%), Gaps = 13/176 (7%)
Query: 385 KRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEG 444
K+L+L N K + L+ LY++DN + L L+ + + +N+L+
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQA 99
Query: 445 PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNS 504
F QL +L L L RN + SLP + +LS L YN L S
Sbjct: 100 LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLS-----------LGYNELQS 147
Query: 505 NIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYN 560
++L L+ L L NN L+ L +L+ + L +N L ++P ++
Sbjct: 148 LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFD 202
Score = 34.3 bits (77), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 67/164 (40%), Gaps = 36/164 (21%)
Query: 304 KNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYL 363
KNL L V++NKLQ +PI + + L NL L + N P F + L YL
Sbjct: 85 KNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL-----TKLTYL 138
Query: 364 VLSNNSLQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420
L N LQ +F K LT LK L L N + +P +G +
Sbjct: 139 SLGYNELQSLPKGVFDK---LTSLKELRLYNNQ-LKRVP---------EGAF-------- 177
Query: 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
L+ L + + NN+L+ AF L L++L L N
Sbjct: 178 ------DKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++N L+ ++P L N
Sbjct: 150 LEKLSLANNQLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 116 PLGALRGLGELQELYLKGNELK 137
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRL--------TQL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++N L+ ++P L N
Sbjct: 150 LEKLSLANNQLT-ELPAGLLN 169
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 116 PLGALRGLGELQELYLKGNELK 137
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 34.7 bits (78), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
H+P NL +L + +N ++F G LE L LS+N+ +
Sbjct: 45 HVPAASFRACRNLTILWLHSNVLARIDAAAFT-----GLALLEQLDLSDNAQLRSVDPAT 99
Query: 379 FN-LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG----------------- 420
F+ L +L L+LD P +ALQ LY+ DN +
Sbjct: 100 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 159
Query: 421 ------NIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
++P R L LD +++ NR+ P AF L L L L NN+S +LP+
Sbjct: 160 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 217
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%)
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
G L+YL L +N+LQ +L L L L GN + +L L +
Sbjct: 126 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 185
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
N ++ P +L L + + N L A LR L+ L L+ N
Sbjct: 186 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 234
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 34.3 bits (77), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 71/179 (39%), Gaps = 31/179 (17%)
Query: 319 HIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378
H+P NL +L + +N ++F G LE L LS+N+ +
Sbjct: 46 HVPAASFRACRNLTILWLHSNVLARIDAAAFT-----GLALLEQLDLSDNAQLRSVDPAT 100
Query: 379 FN-LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG----------------- 420
F+ L +L L+LD P +ALQ LY+ DN +
Sbjct: 101 FHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFL 160
Query: 421 ------NIPTR-LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS 472
++P R L LD +++ NR+ P AF L L L L NN+S +LP+
Sbjct: 161 HGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 43/109 (39%)
Query: 356 GCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415
G L+YL L +N+LQ +L L L L GN + +L L +
Sbjct: 127 GLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ 186
Query: 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464
N ++ P +L L + + N L A LR L+ L L+ N
Sbjct: 187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRLT--------QL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++N L+ ++P L N
Sbjct: 150 LEKLSLANNQLT-ELPAGLLN 169
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 116 PLGALRGLGELQELYLKGNELK 137
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 68/141 (48%), Gaps = 26/141 (18%)
Query: 430 SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489
+F A +MP RL QL +L+ +L++ + G+LP + + LS N L
Sbjct: 45 TFSLATLMPYTRLT--------QL-NLDRCELTKLQVDGTLPVLGT------LDLSHNQL 89
Query: 490 QG-PLLG---------DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNK 539
Q PLLG D+S+NRL S + L +L+ L L N L+ P L K
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPK 149
Query: 540 LQLVDLSHNNLSGQIPHCLYN 560
L+ + L++N L+ ++P L N
Sbjct: 150 LEKLSLANNQLT-ELPAGLLN 169
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 123 TILDQGLCELVYLQ---------EVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENI 173
T L+ CEL LQ +++ N L SLP L L +LDVSFN+LT ++
Sbjct: 58 TQLNLDRCELTKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SL 115
Query: 174 SSSPLMNLTYIEELWLSNNHFQ 195
L L ++EL+L N +
Sbjct: 116 PLGALRGLGELQELYLKGNELK 137
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 33.9 bits (76), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 113/244 (46%), Gaps = 33/244 (13%)
Query: 283 KRLSLVNISLFGPFP-LPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATN-- 339
+ L LVN FG FP L + K+L+ L ++NK G+ E+ LP+L L+++ N
Sbjct: 307 QHLELVNCK-FGQFPTLKL---KSLKRLTFTSNK-GGNAFSEVD--LPSLEFLDLSRNGL 359
Query: 340 AFNGSIPSS-FGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398
+F G S FG T L+YL LS N + + S L +L+ L+ ++
Sbjct: 360 SFKGCCSQSDFGTT------SLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL---- 408
Query: 399 PKTLSNCSALQGLY------ISDNNISGNIPTRLGNLSFLDAIMMPNNRL-EGPIPSAFC 451
K +S S L IS + LS L+ + M N E +P F
Sbjct: 409 -KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT 467
Query: 452 QLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWM 510
+LR+L LDLS+ + P+ +S +++ ++++ N L+ + D ++RL S W+
Sbjct: 468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS--VPDGIFDRLTSLQKIWL 525
Query: 511 NRLP 514
+ P
Sbjct: 526 HTNP 529
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG--NIPTRLGNLSFLDAIMM 437
+L+ L L L GN S S+LQ L + N++ N P +G+L L + +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131
Query: 438 PNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
+N ++ +P F L +LE LDLS N I
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS 190
+L+ + +++ N L LP LA L L +L S N L EN+ + NL ++EL L
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQELLLC 516
Query: 191 NNHFQISISLEPFFNHSKL 209
NN Q S +++P + +L
Sbjct: 517 NNRLQQSAAIQPLVSCPRL 535
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 33.9 bits (76), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLS 190
+L+ + +++ N L LP LA L L +L S N L EN+ + NL ++EL L
Sbjct: 461 QLLLVTHLDLSHNRLRA-LPPALAALRCLEVLQASDNAL-ENVDG--VANLPRLQELLLC 516
Query: 191 NNHFQISISLEPFFNHSKL 209
NN Q S +++P + +L
Sbjct: 517 NNRLQQSAAIQPLVSCPRL 535
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 33.9 bits (76), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
L L LQ++N N ++ P LANLT L LD+S N++++ S L LT +E L
Sbjct: 146 ALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 188 WLSNNHF 194
+NN
Sbjct: 201 IATNNQI 207
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis.
pdb|3IIE|B Chain B, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis
Length = 401
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 172 NISSSPLMN--LTYIEELWLSNNHF-QISISLEP-FFNHSKLKFFDGDIYAEIET 222
++ S+ +MN L YIE WL N QI + L P HS +++ DG I A++ T
Sbjct: 222 SVDSATMMNKGLEYIEARWLFNASAEQIEVVLHPQSVIHSMVRYHDGSILAQMGT 276
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 89/223 (39%), Gaps = 24/223 (10%)
Query: 131 ELVYLQEVNIDRNNLS--GSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188
+L L+ +++ RN LS G T L+ LD+SFN + SS + L +E L
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLD 402
Query: 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSIS----LFGHGDS 244
+++ + F + L IY +I +H+ + +S L G+S
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNL------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 456
Query: 245 ---GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS---LFGPFPL 298
P +L ++DLS L + P L L ++N+S F
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNNFFSLDTF 512
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
P C +L+VLD S N + E+ +L LN+ N F
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG--NIPTRLGNLSFLDAIMM 437
+L+ L L L GN S S+LQ L + N++ N P +G+L L + +
Sbjct: 74 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 131
Query: 438 PNNRLEG-PIPSAFCQLRHLEILDLSRNNISG 468
+N ++ +P F L +LE LDLS N I
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675
L +++ LDLS +L P LS + LN+SHNN + + ++ LD S N
Sbjct: 469 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 528
Query: 676 NL 677
++
Sbjct: 529 HI 530
Score = 29.6 bits (65), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 54/197 (27%), Positives = 76/197 (38%), Gaps = 45/197 (22%)
Query: 360 LEYLVLSNN--SLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNN 417
LE+L LS N S +G +F T LK L+L N G+ +N
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-----------------GVITMSSN 391
Query: 418 ISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS----RNNISGSLPSC 473
G L L LD +N + S F LR+L LD+S R +G
Sbjct: 392 FLG-----LEQLEHLD--FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444
Query: 474 SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ 533
SS + + ++ N Q L PD L L +L L+ LE P
Sbjct: 445 SS---LEVLKMAGNSFQENFL------------PDIFTELRNLTFLDLSQCQLEQLSPTA 489
Query: 534 LCWLNKLQLVDLSHNNL 550
L+ LQ++++SHNN
Sbjct: 490 FNSLSSLQVLNMSHNNF 506
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.5 bits (75), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 3/134 (2%)
Query: 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE--IPLQIGELSRIHTLNLSHNNLTG 655
Y+ K L T ++ L ++ LDLS + + LQ+ L + LNLS+N G
Sbjct: 330 YIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLSYNEPLG 389
Query: 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIE-LNALAVFSVAFNNLSGKTPDRVAQFGT 714
F Q+E LD+++ +L+ K P + L+ L V +++ L +A
Sbjct: 390 LEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQD 449
Query: 715 FEEDSYEGNPFLCG 728
+ +GN F G
Sbjct: 450 LRHLNLQGNSFQDG 463
Score = 32.7 bits (73), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Query: 640 LSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLI 686
L ++ L+LSHN+LTG+S SH+K + L+++ NN+ IPP L+
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIR-IIPPHLL 542
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.5 bits (75), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 88/223 (39%), Gaps = 24/223 (10%)
Query: 131 ELVYLQEVNIDRNNLS--GSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188
+L L ++++ N LS G T L+ LD+SFN + SS + L +E L
Sbjct: 50 KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI--TMSSNFLGLEQLEHLD 107
Query: 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSIS----LFGHGDS 244
+++ + F + L IY +I +H+ + +S L G+S
Sbjct: 108 FQHSNLKQMSEFSVFLSLRNL------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS 161
Query: 245 ---GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS---LFGPFPL 298
P +L ++DLS L + P L L ++N+S F
Sbjct: 162 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNNFFSLDTF 217
Query: 299 PIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
P C +L+VLD S N + E+ +L LN+ N F
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
+PD L L +L L+ LE P L+ LQ++++SHNN
Sbjct: 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF 211
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675
L +++ LDLS +L P LS + LN+SHNN + + ++ LD S N
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 233
Query: 676 NL 677
++
Sbjct: 234 HI 235
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 11/133 (8%)
Query: 304 KNLRVLDVSNNKLQGHIPIEI-GEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEY 362
K L+ L + N L+ + + + + +L L+V+ N+ N ++ T W L
Sbjct: 377 KRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH---AYDRTCAWAESIL-V 432
Query: 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN---NIS 419
L LS+N L G +F K+K L+L N I IPK +++ ALQ L ++ N ++
Sbjct: 433 LNLSSNMLTGSVF--RCLPPKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQLKSVP 489
Query: 420 GNIPTRLGNLSFL 432
+ RL +L ++
Sbjct: 490 DGVFDRLTSLQYI 502
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 32.7 bits (73), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 134/332 (40%), Gaps = 44/332 (13%)
Query: 156 LTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD 215
L L ++ S NQLT+ +PL NLT + ++ ++NN L N + L F+
Sbjct: 66 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 122
Query: 216 IYA-----------EIETSH---SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVD 261
I +E S S ++ LTS+ G+ K L + LE +D
Sbjct: 123 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLD 182
Query: 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIP 321
+S N + +L K L+ L N + PL I NL L ++ N+L+
Sbjct: 183 ISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK---- 233
Query: 322 IEIGEV--LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF 379
+IG + L NL L++A N + P S G L L L N + S
Sbjct: 234 -DIGTLASLTNLTDLDLANNQISNLAPLS-------GLTKLTELKLGANQISN--ISPLA 283
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
LT L L L+ N P +SN L L + NNIS P + +L+ L + N
Sbjct: 284 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFAN 339
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLP 471
N++ S+ L ++ L N IS P
Sbjct: 340 NKVSD--VSSLANLTNINWLSAGHNQISDLTP 369
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 89/332 (26%), Positives = 134/332 (40%), Gaps = 44/332 (13%)
Query: 156 LTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD 215
L L ++ S NQLT+ +PL NLT + ++ ++NN L N + L F+
Sbjct: 62 LNNLTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ 118
Query: 216 IYA-----------EIETSH---SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVD 261
I +E S S ++ LTS+ G+ K L + LE +D
Sbjct: 119 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLD 178
Query: 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIP 321
+S N + +L K L+ L N + PL I NL L ++ N+L+
Sbjct: 179 ISS-NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK---- 229
Query: 322 IEIGEV--LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF 379
+IG + L NL L++A N + P S G L L L N + S
Sbjct: 230 -DIGTLASLTNLTDLDLANNQISNLAPLS-------GLTKLTELKLGANQISN--ISPLA 279
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
LT L L L+ N P +SN L L + NNIS P + +L+ L + N
Sbjct: 280 GLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSN 335
Query: 440 NRLEGPIPSAFCQLRHLEILDLSRNNISGSLP 471
N++ S+ L ++ L N IS P
Sbjct: 336 NKVSD--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 28/225 (12%)
Query: 131 ELVYLQEVNIDRNNLSGSLPWCLANLTY----LRLLDVSFNQLTENISSSPLMNLTYIEE 186
+L L+ +++ RN LS C + + L+ LD+SFN + SS + L +E
Sbjct: 369 DLPSLEFLDLSRNGLS--FKGCCSQSDFGTISLKYLDLSFNGVI--TMSSNFLGLEQLEH 424
Query: 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSIS----LFGHG 242
L +++ + F + L IY +I +H+ + +S L G
Sbjct: 425 LDFQHSNLKQMSEFSVFLSLRNL------IYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 478
Query: 243 DS---GIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNIS---LFGPF 296
+S P +L ++DLS L + P L L ++N+S F
Sbjct: 479 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF----NSLSSLQVLNMSHNNFFSLD 534
Query: 297 PLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341
P C +L+VLD S N + E+ +L LN+ N F
Sbjct: 535 TFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 579
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG--NIPTRLGNLSFLDAIMM 437
+L+ L L L GN S S+LQ L + N++ N P +G+L L + +
Sbjct: 98 SLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFP--IGHLKTLKELNV 155
Query: 438 PNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
+N ++ +P F L +LE LDLS N I
Sbjct: 156 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%)
Query: 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675
L +++ LDLS +L P LS + LN+SHNN + + ++ LD S N
Sbjct: 493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN 552
Query: 676 NL 677
++
Sbjct: 553 HI 554
Score = 29.3 bits (64), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 77/195 (39%), Gaps = 37/195 (18%)
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS----------GNIPTRLGNLS 430
L LKRL N G + + +L+ L +S N +S G I + +LS
Sbjct: 348 LKSLKRLTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLS 405
Query: 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIR---------- 480
F I M +N F L LE LD +N+ + S ++R
Sbjct: 406 FNGVITMSSN---------FLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHT 455
Query: 481 --RVHLSK--NMLQGPLLGDLSYNRLNSN-IPDWMNRLPQLRYLILANNGLEGEMPLQLC 535
RV + N L + ++ N N +PD L L +L L+ LE P
Sbjct: 456 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 515
Query: 536 WLNKLQLVDLSHNNL 550
L+ LQ++++SHNN
Sbjct: 516 SLSSLQVLNMSHNNF 530
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
L L LQ+++ N ++ P LANLT L LD+S N++++ S L LT +E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 188 WLSNNHF 194
+NN
Sbjct: 201 IATNNQI 207
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 128 GLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187
L L LQ+++ N ++ P LANLT L LD+S N++++ S L LT +E L
Sbjct: 146 ALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSD---ISVLAKLTNLESL 200
Query: 188 WLSNNHF 194
+NN
Sbjct: 201 IATNNQI 207
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 33/90 (36%)
Query: 638 GELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697
G L + L L N LTG P F ++ L L N + + L+ L ++
Sbjct: 51 GRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLY 110
Query: 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727
N +S P + + NPF C
Sbjct: 111 DNQISCVMPGSFEHLNSLTSLNLASNPFNC 140
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 153 LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFF 212
LA L+ L++L + NQ+T NIS PL LT ++ L + NN L P N SKL
Sbjct: 131 LAGLSNLQVLYLDLNQIT-NIS--PLAGLTNLQYLSIGNNQVN---DLTPLANLSKLTTL 184
Query: 213 DGD 215
D
Sbjct: 185 RAD 187
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 44/329 (13%)
Query: 159 LRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA 218
L ++ S NQLT+ +PL NLT + ++ ++NN L N + L F+ I
Sbjct: 70 LTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 126
Query: 219 -----------EIETSH---SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSH 264
+E S S ++ LTS+ G+ K L + LE +D+S
Sbjct: 127 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186
Query: 265 LNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEI 324
N + +L K L+ L N + PL I NL L ++ N+L+ +I
Sbjct: 187 -NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK-----DI 236
Query: 325 GEV--LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382
G + L NL L++A N + P S G L L L N + S LT
Sbjct: 237 GTLASLTNLTDLDLANNQISNLAPLS-------GLTKLTELKLGANQISN--ISPLAGLT 287
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
L L L+ N P +SN L L + NNIS P + +L+ L + NN++
Sbjct: 288 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 343
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLP 471
S+ L ++ L N IS P
Sbjct: 344 SD--VSSLANLTNINWLSAGHNQISDLTP 370
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS +Q +L+ L L L GN S S+LQ L + N++
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 115
Query: 420 G--NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
N P +G+L L + + +N ++ +P F L +LE LDLS N I
Sbjct: 116 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.2 bits (69), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS +Q +L+ L L L GN S S+LQ L + N++
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 420 G--NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
N P +G+L L + + +N ++ +P F L +LE LDLS N I
Sbjct: 115 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS +Q +L+ L L L GN S S+LQ L + N++
Sbjct: 55 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 114
Query: 420 G--NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
N P +G+L L + + +N ++ +P F L +LE LDLS N I
Sbjct: 115 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 133/329 (40%), Gaps = 44/329 (13%)
Query: 159 LRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYA 218
L ++ S NQLT+ +PL NLT + ++ ++NN L N + L F+ I
Sbjct: 65 LTQINFSNNQLTD---ITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITD 121
Query: 219 -----------EIETSH---SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSH 264
+E S S ++ LTS+ G+ K L + LE +D+S
Sbjct: 122 IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISS 181
Query: 265 LNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEI 324
N + +L K L+ L N + PL I NL L ++ N+L+ +I
Sbjct: 182 -NKVSDIS--VLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLK-----DI 231
Query: 325 GEV--LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382
G + L NL L++A N + P S G L L L N + S LT
Sbjct: 232 GTLASLTNLTDLDLANNQISNLAPLS-------GLTKLTELKLGANQISN--ISPLAGLT 282
Query: 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442
L L L+ N P +SN L L + NNIS P + +L+ L + NN++
Sbjct: 283 ALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKV 338
Query: 443 EGPIPSAFCQLRHLEILDLSRNNISGSLP 471
S+ L ++ L N IS P
Sbjct: 339 SD--VSSLANLTNINWLSAGHNQISDLTP 365
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 59/120 (49%), Gaps = 15/120 (12%)
Query: 409 QGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNIS 467
Q LY+ DN I+ P +L L + + +N+L G +P F L L +LDL N ++
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 468 GSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLE 527
LP S+ F+ R VHL + + N+L + +P + RL L +L L N L+
Sbjct: 102 -VLP--SAVFD-RLVHLKELF--------MCCNKL-TELPRGIERLTHLTHLALDQNQLK 148
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS +Q +L+ L L L GN S S+LQ L + N++
Sbjct: 54 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113
Query: 420 G--NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
N P +G+L L + + +N ++ +P F L +LE LDLS N I
Sbjct: 114 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 398 IPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457
+PK +S + L L + +N+IS L L A+++ NN++ AF LR L+
Sbjct: 48 VPKEISPDTTL--LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105
Query: 458 ILDLSRNNISGSLPSCSSPFNIRRVH 483
L +S+N++ P+ S R+H
Sbjct: 106 KLYISKNHLVEIPPNLPSSLVELRIH 131
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
+L L++ +N+L +P + E L L L + N SIPS N P L L
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP----SLRRLD 137
Query: 365 LSNNSLQGQLFSKEFN-LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
L + F L L+ LNL G + DIP L+ L+ L +S N + P
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN-IRRV 482
L+ L + + + ++ +AF L+ LE L+LS NN+ +P + + RV
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERV 255
Query: 483 HLSKN 487
HL+ N
Sbjct: 256 HLNHN 260
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 30.8 bits (68), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 68/292 (23%), Positives = 124/292 (42%), Gaps = 49/292 (16%)
Query: 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFL 101
K+++ RKL A+L SF+Q+ELL+L+ L + ++ + + ++
Sbjct: 48 KIVTFKNSTMRKLP-------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100
Query: 102 QMSELMAXXXXXXXXXXXXXGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRL 161
+ + + + L + ++RN+LS N L
Sbjct: 101 GFNAI---------------RYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTT 145
Query: 162 LDVSFNQLTENISSSPLMNLTYIEELWLSNNHF-QISISLEPFFNHSKLKFFDGDIYA-- 218
L +S N L E I T ++ L LS+N + +SL P H+ + + A
Sbjct: 146 LSMSNNNL-ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIP 204
Query: 219 ----EIETSHSSLT-----PKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTR 269
E++ SH+S+ +LT + L + + +L + L VDLS+ L +
Sbjct: 205 IAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK 262
Query: 270 EFPNWLLEKNKKLKRL-----SLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
+ + K ++L+RL LV ++L+G P+P L+VLD+S+N L
Sbjct: 263 IMYHPFV-KMQRLERLYISNNRLVALNLYGQ-PIP-----TLKVLDLSHNHL 307
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 68/285 (23%), Positives = 122/285 (42%), Gaps = 38/285 (13%)
Query: 269 REFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVL 328
R+ P LL+ ++++ L+L ++ + ++ L + N ++ ++P + + +
Sbjct: 58 RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 116
Query: 329 PNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLN 388
P L VL + N S+P + P L L +SNN+L+ T L+ L
Sbjct: 117 PLLTVLVLERNDL-SSLPRGIFHNTPK----LTTLSMSNNNLERIEDDTFQATTSLQNLQ 171
Query: 389 LDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLG---NLSFLDAIMMPNNRLEGP 445
L N T + S + L+ + N+S N+ + L + LDA N + GP
Sbjct: 172 LSSNRL------THVDLSLIPSLFHA--NVSYNLLSTLAIPIAVEELDASHNSINVVRGP 223
Query: 446 IPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSN 505
+ L IL L NN++ + + P G + DLSYN L
Sbjct: 224 VNVE------LTILKLQHNNLTDTAWLLNYP--------------GLVEVDLSYNELEKI 263
Query: 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNL 550
+ ++ +L L ++NN L + L + L+++DLSHN+L
Sbjct: 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHL 307
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Query: 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419
L+ L LS +Q +L+ L L L GN S S+LQ L + N++
Sbjct: 56 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLA 115
Query: 420 G--NIPTRLGNLSFLDAIMMPNNRLEG-PIPSAFCQLRHLEILDLSRNNI 466
N P +G+L L + + +N ++ +P F L +LE LDLS N I
Sbjct: 116 SLENFP--IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 133 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187
Query: 419 S 419
S
Sbjct: 188 S 188
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 30.4 bits (67), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 40/76 (52%), Gaps = 7/76 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 134 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKNHI 188
Query: 419 SGNIPTR-LGNLSFLD 433
S R L NL L+
Sbjct: 189 SDLRALRGLKNLDVLE 204
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 136 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 419 S 419
S
Sbjct: 191 S 191
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 640 LSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFN 699
L+ + LNLS N L F ++ ++E LDLSYN++ + L L ++ N
Sbjct: 322 LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN 381
Query: 700 NLSGKTPDRV-AQFGTFEEDSYEGNPFLCGQP 730
L PD + + + ++ NP+ C P
Sbjct: 382 QLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP 412
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 81/199 (40%), Gaps = 19/199 (9%)
Query: 330 NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFS------------K 377
++ L+++ N F S+ F + ++ L+LSN+ G F K
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGT--KIQSLILSNSYNMGSSFGHTNFKDPDNFTFK 270
Query: 378 EFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMM 437
+ +K +L + + S+ + L+ L ++ N I+ L+ L + +
Sbjct: 271 GLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330
Query: 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNIS--GSLPSCSSPFNIRRVHLSKNMLQGPLLG 495
N L F L LE+LDLS N+I G P N++ + L N L+ +
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLP-NLKELALDTNQLKS--VP 387
Query: 496 DLSYNRLNSNIPDWMNRLP 514
D ++RL S W++ P
Sbjct: 388 DGIFDRLTSLQKIWLHTNP 406
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 134 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 188
Query: 419 S 419
S
Sbjct: 189 S 189
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 156 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 210
Query: 419 S 419
S
Sbjct: 211 S 211
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 136 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 190
Query: 419 S 419
S
Sbjct: 191 S 191
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.0 bits (66), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 6/102 (5%)
Query: 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG---KIPPRLIELNALAVFS 695
+L+ + LNL+HN L F + + LDLSYN L + +L +L L ++
Sbjct: 131 KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190
Query: 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNE 737
++ DR+ + + NP+ C P ++ +E
Sbjct: 191 NQLKSVPDGVFDRLT---SLQYIWLHDNPWDCTCPGIRYLSE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 419 S 419
S
Sbjct: 209 S 209
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 419 S 419
S
Sbjct: 209 S 209
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 154 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 208
Query: 419 S 419
S
Sbjct: 209 S 209
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 3/76 (3%)
Query: 380 NLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439
NLTK LNL NH + D+ LSN + L L ++++ + P + NL+ L ++ +
Sbjct: 130 NLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186
Query: 440 NRLEGPIPSAFCQLRH 455
N++E P A H
Sbjct: 187 NQIEDISPLASLTSLH 202
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 360 LEYLVLSNNSLQG-QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNI 418
LE L L NN + + S+ LTKL L+L+ N +P L+ + LQ LY+S N+I
Sbjct: 131 LESLYLGNNKITDITVLSR---LTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 185
Query: 419 S 419
S
Sbjct: 186 S 186
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 29.6 bits (65), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 53/185 (28%), Positives = 82/185 (44%), Gaps = 10/185 (5%)
Query: 305 NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLV 364
+L L++ +N+L +P + E L L L + N SIPS N P L L
Sbjct: 84 SLNTLELFDNRLTT-VPTQAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP----SLRRLD 137
Query: 365 LSNNSLQGQLFSKEFN-LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP 423
L + F L L+ LNL G + DIP L+ L+ L +S N + P
Sbjct: 138 LGELKRLEYISEAAFEGLVNLRYLNL-GMCNLKDIPN-LTALVRLEELELSGNRLDLIRP 195
Query: 424 TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN-IRRV 482
L+ L + + + ++ +AF L+ LE L+LS NN+ +P + + RV
Sbjct: 196 GSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERV 255
Query: 483 HLSKN 487
HL+ N
Sbjct: 256 HLNHN 260
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 29.6 bits (65), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 38/84 (45%)
Query: 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440
L L+ L + GNHF P + S+L+ L++ ++ +S L+ L + + +N
Sbjct: 217 LVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276
Query: 441 RLEGPIPSAFCQLRHLEILDLSRN 464
L F LR+L L L N
Sbjct: 277 NLSSLPHDLFTPLRYLVELHLHHN 300
>pdb|1MD7|A Chain A, Monomeric Structure Of The Zymogen Of Complement Protease
C1r
Length = 328
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 156 LTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD 215
LT L ++ N S + T +EEL NH +S+ P + + F+GD
Sbjct: 124 LTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGD 183
Query: 216 IY-AEIETSHS---SLTPKFQLTSISLFGHGDSGIFPKFLYHQ----HDLEYVDLSHLNL 267
I E+E S + +L P + + + G G F + HDL +V L N
Sbjct: 184 IALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVAN- 242
Query: 268 TREFPNWLLEKNK 280
+ NWL KN+
Sbjct: 243 PQACENWLRGKNR 255
>pdb|1MD8|A Chain A, Monomeric Structure Of The Active Catalytic Domain Of
Complement Protease C1r
Length = 329
Score = 29.3 bits (64), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 55/133 (41%), Gaps = 9/133 (6%)
Query: 156 LTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGD 215
LT L ++ N S + T +EEL NH +S+ P + + F+GD
Sbjct: 124 LTAAHTLYPKEHEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGD 183
Query: 216 IY-AEIETSHS---SLTPKFQLTSISLFGHGDSGIFPKFLYHQ----HDLEYVDLSHLNL 267
I E+E S + +L P + + + G G F + HDL +V L N
Sbjct: 184 IALLELENSVTLGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVAN- 242
Query: 268 TREFPNWLLEKNK 280
+ NWL KN+
Sbjct: 243 PQACENWLRGKNR 255
>pdb|2QY0|B Chain B, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
pdb|2QY0|D Chain D, Active Dimeric Structure Of The Catalytic Domain Of C1r
Reveals Enzyme-product Like Contacts
Length = 242
Score = 29.3 bits (64), Expect = 8.6, Method: Composition-based stats.
Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 9/122 (7%)
Query: 167 NQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDI-YAEIETSHS 225
++ N S + T +EEL NH +S+ P + + F+GDI E+E S +
Sbjct: 46 HEAQSNASLDVFLGHTNVEELMKLGNHPIRRVSVHPDYRQDESYNFEGDIALLELENSVT 105
Query: 226 ---SLTPKFQLTSISLFGHGDSGIFPKFLYHQ----HDLEYVDLSHLNLTREFPNWLLEK 278
+L P + + + G G F + HDL +V L N + NWL K
Sbjct: 106 LGPNLLPICLPDNDTFYDLGLMGYVSGFGVMEEKIAHDLRFVRLPVAN-PQACENWLRGK 164
Query: 279 NK 280
N+
Sbjct: 165 NR 166
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 29.3 bits (64), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 65/273 (23%), Positives = 115/273 (42%), Gaps = 42/273 (15%)
Query: 61 LNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMAXXXXXXXXXXXX 120
L A+L SF+Q+ELL+L+ L + ++ + + ++ + +
Sbjct: 66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125
Query: 121 XGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180
+L +RN+LS N L L +S N L E I
Sbjct: 126 TVLVL---------------ERNDLSSLPRGIFHNTPKLTTLSMSNNNL-ERIEDDTFQA 169
Query: 181 LTYIEELWLSNNHF-QISISLEPFFNHSKLKFFDGDIYA------EIETSHSSLT----- 228
T ++ L LS+N + +SL P H+ + + A E++ SH+S+
Sbjct: 170 TTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP 229
Query: 229 PKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRL--- 285
+LT + L + + +L + L VDLS+ L + + + K ++L+RL
Sbjct: 230 VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYIS 286
Query: 286 --SLVNISLFGPFPLPIHCHKNLRVLDVSNNKL 316
LV ++L+G P+P L+VLD+S+N L
Sbjct: 287 NNRLVALNLYGQ-PIPT-----LKVLDLSHNHL 313
>pdb|3FFZ|A Chain A, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
pdb|3FFZ|B Chain B, Domain Organization In Clostridium Butulinum Neurotoxin
Type E Is Unique: Its Implication In Faster
Translocation
Length = 1252
Score = 28.9 bits (63), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 145 LSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISL 200
L+ S+P+ L++ T ++L FN+ + I SS ++N+ Y + ++ + + +I++
Sbjct: 819 LNNSIPFKLSSYTDDKILISYFNKFFKRIKSSSVLNMRYKNDKYVDTSGYDSNINI 874
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,109,448
Number of Sequences: 62578
Number of extensions: 924434
Number of successful extensions: 2328
Number of sequences better than 100.0: 97
Number of HSP's better than 100.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 59
Number of HSP's that attempted gapping in prelim test: 1542
Number of HSP's gapped (non-prelim): 541
length of query: 740
length of database: 14,973,337
effective HSP length: 106
effective length of query: 634
effective length of database: 8,340,069
effective search space: 5287603746
effective search space used: 5287603746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)