Query 045323
Match_columns 740
No_of_seqs 423 out of 4487
Neff 10.4
Searched_HMMs 29240
Date Mon Mar 25 21:30:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045323.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045323hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-76 4.2E-81 683.9 51.8 694 6-739 7-752 (768)
2 3rgz_A Protein brassinosteroid 100.0 2.1E-63 7.1E-68 573.6 43.7 614 100-727 69-718 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 8.6E-58 2.9E-62 522.9 50.3 572 42-731 26-627 (680)
4 3t6q_A CD180 antigen; protein- 100.0 2.1E-52 7.2E-57 471.9 46.5 518 108-731 33-565 (606)
5 1ziw_A TOLL-like receptor 3; i 100.0 6.8E-52 2.3E-56 474.1 50.1 547 108-726 25-597 (680)
6 3vq2_A TLR4, TOLL-like recepto 100.0 5.7E-52 1.9E-56 468.4 38.9 515 108-732 32-564 (606)
7 3j0a_A TOLL-like receptor 5; m 100.0 3.2E-51 1.1E-55 477.0 40.0 501 100-732 40-566 (844)
8 3t6q_A CD180 antigen; protein- 100.0 2.5E-50 8.5E-55 455.0 43.6 519 83-706 33-564 (606)
9 3vq2_A TLR4, TOLL-like recepto 100.0 1.3E-48 4.4E-53 441.0 39.6 502 101-706 49-562 (606)
10 2z63_A TOLL-like receptor 4, v 100.0 1.5E-46 5.3E-51 421.2 39.6 502 109-732 29-537 (570)
11 3j0a_A TOLL-like receptor 5; m 100.0 6.6E-47 2.2E-51 440.7 37.5 538 29-706 14-564 (844)
12 4eco_A Uncharacterized protein 100.0 2.3E-47 8E-52 429.6 25.0 356 247-706 198-604 (636)
13 4ecn_A Leucine-rich repeat pro 100.0 5.8E-46 2E-50 423.7 36.7 363 232-731 492-871 (876)
14 2z81_A CD282 antigen, TOLL-lik 100.0 7E-46 2.4E-50 413.6 30.3 470 108-730 26-514 (549)
15 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-43 8.5E-48 401.0 40.2 513 109-731 53-585 (635)
16 2z63_A TOLL-like receptor 4, v 100.0 9E-44 3.1E-48 398.7 35.9 473 103-707 47-536 (570)
17 2z81_A CD282 antigen, TOLL-lik 100.0 1.8E-43 6.1E-48 394.2 35.7 500 28-706 3-514 (549)
18 2z7x_B TOLL-like receptor 1, v 100.0 9.6E-45 3.3E-49 401.2 23.4 439 108-731 21-486 (520)
19 4g8a_A TOLL-like receptor 4; l 100.0 1.2E-40 4.2E-45 378.7 38.4 521 42-703 53-581 (635)
20 2z7x_B TOLL-like receptor 1, v 100.0 7.7E-42 2.6E-46 378.0 26.6 373 83-552 21-413 (520)
21 4eco_A Uncharacterized protein 100.0 2.7E-42 9.4E-47 388.3 22.9 419 232-727 82-601 (636)
22 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.3E-41 4.5E-46 379.0 25.0 461 108-731 31-515 (562)
23 4ecn_A Leucine-rich repeat pro 100.0 1.8E-39 6.1E-44 370.4 31.2 423 231-727 323-841 (876)
24 3v47_A TOLL-like receptor 5B a 100.0 2.7E-38 9.2E-43 343.6 27.5 113 618-730 300-412 (455)
25 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.1E-37 3.8E-42 347.4 28.6 445 108-681 52-513 (562)
26 3v47_A TOLL-like receptor 5B a 100.0 3.3E-36 1.1E-40 327.1 29.7 365 255-707 30-413 (455)
27 1jl5_A Outer protein YOPM; leu 100.0 1.6E-36 5.4E-41 326.1 22.8 417 107-728 10-431 (454)
28 2id5_A Lingo-1, leucine rich r 100.0 7.9E-36 2.7E-40 325.9 28.3 305 359-731 33-338 (477)
29 1jl5_A Outer protein YOPM; leu 100.0 2.9E-34 9.9E-39 308.5 28.3 400 131-727 9-410 (454)
30 2id5_A Lingo-1, leucine rich r 100.0 7.3E-34 2.5E-38 310.3 23.1 247 283-551 14-261 (477)
31 1o6v_A Internalin A; bacterial 100.0 7.4E-33 2.5E-37 300.7 29.1 348 253-705 44-391 (466)
32 1o6v_A Internalin A; bacterial 100.0 1.9E-32 6.5E-37 297.5 31.3 345 230-679 45-389 (466)
33 3bz5_A Internalin-J, INLJ; leu 100.0 2.3E-32 7.7E-37 294.0 29.4 317 102-551 36-352 (457)
34 3o6n_A APL1; leucine-rich repe 100.0 6.9E-33 2.4E-37 294.0 24.7 335 303-730 44-378 (390)
35 3o6n_A APL1; leucine-rich repe 100.0 1.3E-32 4.5E-37 291.9 26.5 313 328-730 44-356 (390)
36 1ogq_A PGIP-2, polygalacturona 100.0 9.4E-33 3.2E-37 282.6 21.0 284 6-417 1-302 (313)
37 3oja_B Anopheles plasmodium-re 100.0 2.6E-32 8.9E-37 305.5 24.6 334 303-729 50-383 (597)
38 3bz5_A Internalin-J, INLJ; leu 100.0 4.5E-32 1.5E-36 291.7 25.4 360 248-709 35-394 (457)
39 1ogq_A PGIP-2, polygalacturona 100.0 8.1E-33 2.8E-37 283.1 17.0 259 383-736 51-313 (313)
40 3oja_B Anopheles plasmodium-re 100.0 2.3E-31 7.7E-36 297.9 26.3 313 328-730 50-362 (597)
41 4fmz_A Internalin; leucine ric 100.0 1.9E-30 6.6E-35 270.8 27.2 304 302-725 42-345 (347)
42 4fmz_A Internalin; leucine ric 100.0 5.2E-30 1.8E-34 267.5 28.7 306 277-702 41-346 (347)
43 2ft3_A Biglycan; proteoglycan, 100.0 2.4E-29 8.3E-34 260.4 27.7 195 330-551 34-230 (332)
44 1xku_A Decorin; proteoglycan, 100.0 1.1E-28 3.9E-33 255.2 29.8 269 359-723 53-329 (330)
45 1z7x_W Ribonuclease inhibitor; 100.0 8.5E-33 2.9E-37 300.9 -2.2 207 256-467 4-240 (461)
46 2ft3_A Biglycan; proteoglycan, 100.0 6.5E-29 2.2E-33 257.1 25.0 289 359-724 34-331 (332)
47 1xku_A Decorin; proteoglycan, 100.0 1.8E-28 6.1E-33 253.7 26.6 269 383-728 32-308 (330)
48 1z7x_W Ribonuclease inhibitor; 100.0 3.6E-32 1.2E-36 296.0 -6.7 94 250-343 51-156 (461)
49 2z80_A TOLL-like receptor 2, v 100.0 8.4E-29 2.9E-33 258.6 19.1 281 357-730 30-318 (353)
50 2z66_A Variable lymphocyte rec 100.0 1.6E-28 5.4E-33 251.3 18.8 251 385-730 10-265 (306)
51 3zyj_A Leucine-rich repeat-con 100.0 7.5E-28 2.6E-32 259.3 24.2 234 406-731 64-297 (440)
52 3zyi_A Leucine-rich repeat-con 100.0 1.1E-27 3.7E-32 258.9 23.6 115 616-732 195-309 (452)
53 1ozn_A Reticulon 4 receptor; N 99.9 1.1E-26 3.8E-31 234.8 19.8 114 618-731 130-243 (285)
54 2z66_A Variable lymphocyte rec 99.9 6.1E-27 2.1E-31 239.5 18.0 175 360-551 9-188 (306)
55 4fcg_A Uncharacterized protein 99.9 2.2E-26 7.6E-31 236.7 18.2 256 4-351 20-299 (328)
56 1ozn_A Reticulon 4 receptor; N 99.9 1E-25 3.5E-30 227.7 21.3 268 361-723 14-284 (285)
57 2z80_A TOLL-like receptor 2, v 99.9 3.1E-26 1.1E-30 239.1 17.7 277 332-681 34-317 (353)
58 3ogk_B Coronatine-insensitive 99.9 2E-28 6.9E-33 275.3 -2.2 249 25-288 38-326 (592)
59 3ogk_B Coronatine-insensitive 99.9 3.3E-28 1.1E-32 273.6 -1.0 403 253-720 110-545 (592)
60 4fcg_A Uncharacterized protein 99.9 1.3E-25 4.4E-30 230.9 18.4 237 381-704 80-316 (328)
61 3zyi_A Leucine-rich repeat-con 99.9 1.4E-24 4.8E-29 234.5 26.0 228 382-678 75-303 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.3E-24 4.6E-29 233.8 25.1 228 382-678 64-292 (440)
63 3oja_A Leucine-rich immune mol 99.9 4E-26 1.4E-30 247.7 10.8 248 405-732 33-288 (487)
64 3o53_A Protein LRIM1, AGAP0063 99.9 1.5E-26 5.1E-31 237.3 6.5 269 359-708 11-282 (317)
65 2z62_A TOLL-like receptor 4, v 99.9 1.2E-24 4.1E-29 218.7 19.6 166 509-730 71-241 (276)
66 2o6q_A Variable lymphocyte rec 99.9 4.5E-24 1.5E-28 213.5 22.4 206 455-730 17-222 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.9 1.8E-25 6E-30 229.3 12.4 260 383-722 11-271 (317)
68 1wwl_A Monocyte differentiatio 99.9 4E-26 1.4E-30 233.5 4.9 158 514-727 149-310 (312)
69 1p9a_G Platelet glycoprotein I 99.9 7E-24 2.4E-28 213.7 20.1 208 450-731 6-213 (290)
70 3g06_A SSPH2 (leucine-rich rep 99.9 2.2E-23 7.6E-28 230.4 25.7 246 359-712 62-307 (622)
71 3oja_A Leucine-rich immune mol 99.9 1.2E-24 4E-29 236.2 14.8 224 426-730 30-254 (487)
72 2p1m_B Transport inhibitor res 99.9 6.3E-27 2.2E-31 263.3 -5.8 411 253-723 103-541 (594)
73 3g06_A SSPH2 (leucine-rich rep 99.9 1.5E-22 5.1E-27 223.7 28.6 258 359-727 41-298 (622)
74 1wwl_A Monocyte differentiatio 99.9 2.4E-25 8.2E-30 227.7 5.4 248 359-704 44-311 (312)
75 2p1m_B Transport inhibitor res 99.9 1.1E-26 3.6E-31 261.5 -6.7 441 26-490 32-519 (594)
76 2z62_A TOLL-like receptor 4, v 99.9 3.8E-22 1.3E-26 200.4 21.4 86 618-704 150-239 (276)
77 3m19_A Variable lymphocyte rec 99.9 4.6E-22 1.6E-26 196.5 18.4 111 618-728 84-194 (251)
78 2o6q_A Variable lymphocyte rec 99.9 2.9E-21 9.8E-26 193.0 22.8 117 508-679 103-219 (270)
79 3rfs_A Internalin B, repeat mo 99.9 1.1E-21 3.8E-26 196.2 18.9 199 433-704 22-220 (272)
80 1p9a_G Platelet glycoprotein I 99.9 3.5E-21 1.2E-25 194.0 20.6 203 403-679 7-209 (290)
81 3rfs_A Internalin B, repeat mo 99.9 2.5E-21 8.6E-26 193.6 18.3 210 403-714 38-247 (272)
82 3goz_A Leucine-rich repeat-con 99.9 1.9E-22 6.5E-27 210.9 5.2 105 363-467 3-122 (362)
83 3goz_A Leucine-rich repeat-con 99.9 1.5E-22 5.2E-27 211.6 4.1 262 386-707 2-302 (362)
84 2xwt_C Thyrotropin receptor; s 99.8 6.5E-21 2.2E-25 186.8 13.7 200 431-724 32-237 (239)
85 2ast_B S-phase kinase-associat 99.8 8.8E-22 3E-26 204.2 7.8 255 359-711 48-315 (336)
86 2ca6_A RAN GTPase-activating p 99.8 6E-23 2.1E-27 217.1 -2.1 248 376-705 26-319 (386)
87 1h6u_A Internalin H; cell adhe 99.8 2.9E-20 9.8E-25 189.3 17.5 58 617-678 173-230 (308)
88 2v9t_B SLIT homolog 2 protein 99.8 1.5E-20 5.3E-25 180.9 14.5 158 517-732 14-171 (220)
89 4glp_A Monocyte differentiatio 99.8 1.5E-20 5E-25 192.1 13.6 205 454-727 91-308 (310)
90 3m19_A Variable lymphocyte rec 99.8 1.2E-19 4E-24 179.2 19.1 142 508-704 53-194 (251)
91 1h6u_A Internalin H; cell adhe 99.8 2.8E-20 9.7E-25 189.3 15.0 237 410-731 23-270 (308)
92 2ca6_A RAN GTPase-activating p 99.8 3.8E-22 1.3E-26 210.9 0.7 247 400-729 26-319 (386)
93 4glp_A Monocyte differentiatio 99.8 1.1E-20 3.9E-25 192.9 11.3 80 618-702 225-307 (310)
94 2v70_A SLIT-2, SLIT homolog 2 99.8 4.3E-20 1.5E-24 177.8 14.3 117 615-731 55-171 (220)
95 2xot_A Amphoterin-induced prot 99.8 2E-20 6.8E-25 195.2 12.3 163 514-731 39-207 (361)
96 2xwt_C Thyrotropin receptor; s 99.8 8.9E-20 3E-24 178.7 13.7 78 618-699 156-236 (239)
97 3e6j_A Variable lymphocyte rec 99.8 2.5E-19 8.5E-24 173.8 16.1 156 516-730 21-176 (229)
98 4ay9_X Follicle-stimulating ho 99.8 6.5E-20 2.2E-24 190.6 11.5 226 431-729 31-261 (350)
99 2ast_B S-phase kinase-associat 99.8 4.7E-20 1.6E-24 191.1 8.0 247 407-729 48-309 (336)
100 3cvr_A Invasion plasmid antige 99.8 1.3E-18 4.4E-23 189.8 14.6 74 407-490 60-133 (571)
101 2o6s_A Variable lymphocyte rec 99.8 6.8E-18 2.3E-22 161.4 16.3 151 513-725 27-177 (208)
102 2o6s_A Variable lymphocyte rec 99.8 1.7E-17 5.8E-22 158.6 18.1 163 477-714 28-190 (208)
103 2wfh_A SLIT homolog 2 protein 99.7 8.8E-18 3E-22 157.8 13.1 115 617-732 31-145 (193)
104 1w8a_A SLIT protein; signaling 99.7 9.8E-18 3.3E-22 157.6 12.5 114 618-731 30-144 (192)
105 1h6t_A Internalin B; cell adhe 99.7 3E-17 1E-21 165.3 15.5 80 618-703 135-214 (291)
106 3cvr_A Invasion plasmid antige 99.7 3.4E-17 1.2E-21 178.6 16.9 134 383-551 60-193 (571)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 4.4E-17 1.5E-21 156.7 15.9 87 618-704 82-168 (220)
108 2v9t_B SLIT homolog 2 protein 99.7 4.2E-17 1.4E-21 156.9 15.6 61 618-678 105-165 (220)
109 4ay9_X Follicle-stimulating ho 99.7 4.9E-17 1.7E-21 168.8 17.0 170 307-485 12-185 (350)
110 1m9s_A Internalin B; cell inva 99.7 8.5E-17 2.9E-21 177.7 15.9 123 407-551 22-144 (605)
111 1h6t_A Internalin B; cell adhe 99.7 1.1E-16 3.8E-21 161.1 14.8 172 403-679 43-214 (291)
112 3e6j_A Variable lymphocyte rec 99.7 2.6E-16 8.7E-21 152.5 16.3 85 618-703 89-173 (229)
113 2xot_A Amphoterin-induced prot 99.7 1.5E-16 5.1E-21 165.8 15.0 136 512-702 62-202 (361)
114 1m9s_A Internalin B; cell inva 99.7 2.5E-16 8.7E-21 173.9 16.7 178 403-661 40-217 (605)
115 4ezg_A Putative uncharacterize 99.7 2.3E-16 7.8E-21 149.1 13.0 81 618-702 113-194 (197)
116 4ezg_A Putative uncharacterize 99.7 1.6E-16 5.5E-21 150.1 10.9 152 511-725 41-193 (197)
117 1xeu_A Internalin C; cellular 99.7 2E-16 6.8E-21 156.6 10.2 151 450-680 37-187 (263)
118 2o6r_A Variable lymphocyte rec 99.7 6.6E-16 2.3E-20 143.2 12.8 114 617-730 28-141 (177)
119 1w8a_A SLIT protein; signaling 99.6 1.5E-15 5.1E-20 142.6 14.3 162 515-735 30-192 (192)
120 1dce_A Protein (RAB geranylger 99.6 1.7E-18 5.8E-23 190.1 -7.2 100 617-719 463-566 (567)
121 1xeu_A Internalin C; cellular 99.6 5.5E-16 1.9E-20 153.4 11.3 174 452-707 17-190 (263)
122 1dce_A Protein (RAB geranylger 99.6 2.1E-18 7.3E-23 189.3 -8.2 203 404-696 347-567 (567)
123 3g39_A Variable lymphocyte rec 99.6 1.1E-15 3.9E-20 140.1 10.1 110 618-730 10-119 (170)
124 3sb4_A Hypothetical leucine ri 99.6 9.9E-16 3.4E-20 157.5 8.9 102 616-719 225-327 (329)
125 2ell_A Acidic leucine-rich nuc 99.6 6.8E-15 2.3E-19 135.1 12.1 136 513-705 23-163 (168)
126 4fdw_A Leucine rich hypothetic 99.6 1.3E-13 4.5E-18 144.5 23.1 99 359-463 114-212 (401)
127 3sb4_A Hypothetical leucine ri 99.6 4.2E-15 1.5E-19 152.8 11.1 76 618-695 251-327 (329)
128 2r9u_A Variable lymphocyte rec 99.6 4.7E-15 1.6E-19 136.4 10.2 109 619-730 14-122 (174)
129 4b8c_D Glucose-repressible alc 99.6 1.3E-15 4.5E-20 172.7 6.4 101 618-725 294-403 (727)
130 2je0_A Acidic leucine-rich nuc 99.6 1.2E-14 4.3E-19 130.3 10.8 129 513-698 16-149 (149)
131 2ell_A Acidic leucine-rich nuc 99.6 6.4E-15 2.2E-19 135.2 8.9 108 617-726 49-160 (168)
132 4b8c_D Glucose-repressible alc 99.5 1.1E-15 3.9E-20 173.2 3.2 182 445-703 215-405 (727)
133 2wfh_A SLIT homolog 2 protein 99.5 5.6E-14 1.9E-18 131.7 13.8 86 618-703 55-140 (193)
134 4fs7_A Uncharacterized protein 99.5 4.8E-13 1.6E-17 141.1 22.7 239 399-718 155-393 (394)
135 2je0_A Acidic leucine-rich nuc 99.5 5.9E-15 2E-19 132.4 6.8 105 616-722 41-149 (149)
136 4fdw_A Leucine rich hypothetic 99.5 5.8E-13 2E-17 139.6 23.0 124 328-463 112-235 (401)
137 2o6r_A Variable lymphocyte rec 99.5 9.4E-14 3.2E-18 128.6 13.0 89 618-706 53-141 (177)
138 4fs7_A Uncharacterized protein 99.5 2E-12 6.9E-17 136.3 23.4 238 376-694 156-393 (394)
139 1a9n_A U2A', U2A'; complex (nu 99.5 9.8E-14 3.4E-18 128.3 8.5 135 509-703 14-154 (176)
140 1a9n_A U2A', U2A'; complex (nu 99.4 2.4E-13 8.3E-18 125.6 10.0 105 618-725 43-152 (176)
141 2ifg_A High affinity nerve gro 99.4 1.7E-13 5.8E-18 142.2 9.9 110 620-732 11-122 (347)
142 1ds9_A Outer arm dynein; leuci 99.4 2.6E-15 8.9E-20 141.9 -7.4 87 618-707 71-158 (198)
143 3g39_A Variable lymphocyte rec 99.4 2.8E-12 9.7E-17 117.3 11.3 90 617-706 30-119 (170)
144 1ds9_A Outer arm dynein; leuci 99.3 4.3E-14 1.5E-18 133.5 -3.6 136 506-703 40-186 (198)
145 2r9u_A Variable lymphocyte rec 99.3 7.2E-12 2.5E-16 115.0 11.3 90 617-706 33-122 (174)
146 4gt6_A Cell surface protein; l 99.3 3.5E-10 1.2E-14 119.2 25.0 101 616-722 287-387 (394)
147 4gt6_A Cell surface protein; l 99.3 6.5E-10 2.2E-14 117.1 24.4 110 611-724 259-368 (394)
148 3un9_A NLR family member X1; l 99.2 1E-12 3.4E-17 136.4 -3.9 62 618-679 184-253 (372)
149 3un9_A NLR family member X1; l 99.1 1.7E-12 5.8E-17 134.7 -3.0 175 476-709 71-259 (372)
150 2ifg_A High affinity nerve gro 99.1 9E-11 3.1E-15 121.5 9.1 114 616-730 30-145 (347)
151 4h09_A Hypothetical leucine ri 99.0 9E-08 3.1E-12 100.1 26.8 57 277-337 43-99 (379)
152 4h09_A Hypothetical leucine ri 99.0 5.3E-08 1.8E-12 101.9 24.7 99 612-713 258-356 (379)
153 2ra8_A Uncharacterized protein 98.8 3.7E-09 1.3E-13 108.5 6.3 84 615-700 250-341 (362)
154 2ra8_A Uncharacterized protein 98.5 2.2E-07 7.6E-12 95.3 9.4 187 251-465 135-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.4 6.3E-08 2.1E-12 89.5 1.7 85 618-702 66-164 (185)
156 3rfe_A Platelet glycoprotein I 98.4 2.9E-07 9.9E-12 78.9 5.3 62 668-731 11-73 (130)
157 1io0_A Tropomodulin; LRR prote 98.4 9.7E-08 3.3E-12 88.2 1.8 121 507-678 29-164 (185)
158 3rw6_A Nuclear RNA export fact 98.3 1.1E-07 3.8E-12 92.2 1.1 80 638-719 167-257 (267)
159 3rw6_A Nuclear RNA export fact 98.2 1.7E-06 5.8E-11 83.8 6.4 80 614-695 167-257 (267)
160 3e4g_A ATP synthase subunit S, 98.1 6.8E-07 2.3E-11 80.0 0.7 84 618-701 62-151 (176)
161 3e4g_A ATP synthase subunit S, 97.9 1.6E-06 5.5E-11 77.6 -0.3 95 634-728 54-154 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 4E-05 1.4E-09 69.9 0.8 110 614-723 38-167 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.3 6.3E-05 2.2E-09 68.6 1.5 88 615-702 68-170 (197)
164 3rfe_A Platelet glycoprotein I 96.9 0.0018 6.1E-08 55.1 6.7 57 620-678 11-68 (130)
165 2lz0_A Uncharacterized protein 61.7 9.5 0.00032 30.0 4.4 42 421-463 11-52 (100)
166 2lz0_A Uncharacterized protein 59.8 19 0.00064 28.2 5.9 45 394-439 8-52 (100)
167 2juy_A Neopetrosiamide A; amph 43.9 5.2 0.00018 21.4 0.1 17 723-739 3-22 (28)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-76 Score=683.93 Aligned_cols=694 Identities=29% Similarity=0.396 Sum_probs=581.4
Q ss_pred CCCcHHHHHHHHHHhhc---------CC-CCCCccccceEecCCCCceEEEECCCCCCCCCCCcccccccccccccccee
Q 045323 6 EGCLEQEGYALLKLKHD---------FF-NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELL 75 (740)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---------~~-~~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~L 75 (740)
....+.|+.|+++||++ |. +.+||.|.||.|+ +++|+.+||++..+. |....-++.|.+++.|+.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~~l~~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~--g~~~~l~~~l~~L~~L~~l 82 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKNLLPDWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLN--VGFSAVSSSLLSLTGLESL 82 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTTSSTTCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCC--EEHHHHHHHTTTCTTCCEE
T ss_pred ccCCHHHHHHHHHHHhhCCCcccccCCCCCCCCcCCcceEEC--CCcEEEEECCCCCcC--CccCccChhHhccCccccc
Confidence 44578899999999975 86 7899999999998 689999999998772 2111023567888999999
Q ss_pred eCCC----------CCCCCCcEEeCCCCCCcCcccch--hcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCC
Q 045323 76 DLSI----------LNFKNLEYFNMDFCTAFSNSFLQ--MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRN 143 (740)
Q Consensus 76 dls~----------~~l~~L~~L~l~~~~~~~~~~~~--~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n 143 (740)
+++. .++++|++|+|+ .+.+.+.+|. .++.+++|++|++++|.+.+.++...+.++++|++|++++|
T Consensus 83 ~~~~~~~~~l~~~~~~l~~L~~L~Ls-~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n 161 (768)
T 3rgz_A 83 FLSNSHINGSVSGFKCSASLTSLDLS-RNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161 (768)
T ss_dssp ECTTSCEEECCCCCCCCTTCCEEECC-SSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred CCcCCCcCCCchhhccCCCCCEEECC-CCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence 8876 467899999999 8888888888 89999999999999999987777644589999999999999
Q ss_pred ccccccccc---CcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCcccc
Q 045323 144 NLSGSLPWC---LANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI 220 (740)
Q Consensus 144 ~l~~~~~~~---l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 220 (740)
.+++..+.. +.++++|++|++++|.+++.++ +..+++|++|++++|.+.+.++. +.++++|++|+++.....
T Consensus 162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls~n~l~ 236 (768)
T 3rgz_A 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLS 236 (768)
T ss_dssp CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB---CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECCSSCCC
T ss_pred ccCCcCChhhhhhccCCCCCEEECCCCcccccCC---cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECcCCcCC
Confidence 999888877 8899999999999999987443 48899999999999999865554 889999999999886544
Q ss_pred ccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCC
Q 045323 221 ETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPI 300 (740)
Q Consensus 221 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l 300 (740)
......+..+.+|+.|++++|.+.+.+|.. .+++|++|++++|.+.+.+|..++..+++|++|++++|.+.+..|..+
T Consensus 237 ~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~ 314 (768)
T 3rgz_A 237 GDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFF 314 (768)
T ss_dssp SCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGG
T ss_pred CcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHH
Confidence 333445667789999999999988777765 789999999999999988888775556999999999999988888999
Q ss_pred CCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccC
Q 045323 301 HCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFN 380 (740)
Q Consensus 301 ~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 380 (740)
..+++|++|++++|.+++.+|......+++|++|++++|.+.+.+|..+..... +|++|++++|.+.+..+..+..
T Consensus 315 ~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~----~L~~L~Ls~N~l~~~~~~~~~~ 390 (768)
T 3rgz_A 315 GSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSA----SLLTLDLSSNNFSGPILPNLCQ 390 (768)
T ss_dssp GGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTT----TCSEEECCSSEEEEECCTTTTC
T ss_pred hcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhc----CCcEEEccCCCcCCCcChhhhh
Confidence 999999999999999998899875555899999999999999888888776542 7999999999998877777665
Q ss_pred --CCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCE
Q 045323 381 --LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEI 458 (740)
Q Consensus 381 --l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~ 458 (740)
+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++
T Consensus 391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 470 (768)
T 3rgz_A 391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET 470 (768)
T ss_dssp STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence 788999999999999999999999999999999999999899999999999999999999999999999999999999
Q ss_pred EECCCCcCcccCCCCCC-CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCC
Q 045323 459 LDLSRNNISGSLPSCSS-PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWL 537 (740)
Q Consensus 459 L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l 537 (740)
|++++|.+.+..|.... +++|+.|++++|+++ +.+|.+++.+++|++|++++|++.+.+|..+..+
T Consensus 471 L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l 537 (768)
T 3rgz_A 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-------------GEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC
T ss_pred EEecCCcccCcCCHHHhcCCCCCEEEccCCccC-------------CcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC
Confidence 99999999987776544 899999999988776 4678889999999999999999999999999999
Q ss_pred CCCCEEEccCCcCcCCCCccccccccccccCCC------------------------CccCCCchhhccchhhHHhhhcc
Q 045323 538 NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH------------------------DLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 538 ~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~------------------------~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++|+.|++++|++.+.+|..+............ ......+..+..++.+.......
T Consensus 538 ~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 617 (768)
T 3rgz_A 538 RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS 617 (768)
T ss_dssp TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS
T ss_pred CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc
Confidence 999999999999999999887664311100000 00011111111222111111110
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCC
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 673 (740)
+.. .......+..+++|+.||+++|+++|.+|..|..+++|+.|+|++|++++.+|..|+.+++|++|||+
T Consensus 618 ~~~---------~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs 688 (768)
T 3rgz_A 618 RVY---------GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLS 688 (768)
T ss_dssp CEE---------EEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECC
T ss_pred cee---------cccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECC
Confidence 000 00112245678899999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCCCCCCCCC
Q 045323 674 YNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCNENG 739 (740)
Q Consensus 674 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~~~~~ 739 (740)
+|++++.+|+.+..+++|+.|++++|+++|.+|.. +.+.++...++.|||++|+.|+. +|...+
T Consensus 689 ~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~ 752 (768)
T 3rgz_A 689 SNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCGYPLP-RCDPSN 752 (768)
T ss_dssp SSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEESTTSC-CCCSCC
T ss_pred CCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcCCCCc-CCCCCc
Confidence 99999999999999999999999999999999986 78899999999999999999987 896554
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.1e-63 Score=573.64 Aligned_cols=614 Identities=26% Similarity=0.329 Sum_probs=338.2
Q ss_pred cchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccc--cCcCCCCCCEEEcCCCCCCCCCCccc
Q 045323 100 FLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPW--CLANLTYLRLLDVSFNQLTENISSSP 177 (740)
Q Consensus 100 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~i~~~~ 177 (740)
++..+..+++|+.++++.+.+. .++. .|+++++|++|+|++|.+++.+|. .++++++|++|++++|.+.+.++...
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~-~l~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~ 146 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHIN-GSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSG 146 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEE-ECCC-CCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCS
T ss_pred cChhHhccCcccccCCcCCCcC-CCch-hhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHH
Confidence 4444444444444444444432 2222 344445555555555544444444 44445555555555554444333322
Q ss_pred cCCCCCCCEEeccCCcccccCCccc--cccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCC
Q 045323 178 LMNLTYIEELWLSNNHFQISISLEP--FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQH 255 (740)
Q Consensus 178 l~~l~~L~~L~l~~n~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 255 (740)
+.++++|++|++++|.+.+..+... +.++++|+.|+++....... .....+.+|++|++++|.+.+.+|. ++.++
T Consensus 147 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 147 GLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD--VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp CCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESC--CBCTTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred hccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCccccc--CCcccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 2444455555555544442222111 34444444444444322111 1113333455555555544444443 44445
Q ss_pred CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEe
Q 045323 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLN 335 (740)
Q Consensus 256 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~ 335 (740)
+|++|++++|.+.+.+|..+ ..+++|++|++++|.+.+..|.. .+++|++|++++|.+++.+|..++..+++|++|+
T Consensus 224 ~L~~L~Ls~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~ 300 (768)
T 3rgz_A 224 ALQHLDISGNKLSGDFSRAI-STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300 (768)
T ss_dssp SCCEEECCSSCCCSCHHHHT-TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEE
T ss_pred CCCEEECcCCcCCCcccHHH-hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEE
Confidence 55555555555444444332 34455555555555444333322 4444555555555544444444443334455555
Q ss_pred ccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCccc-ccCCCCCCeeecCCCcceecCCcCCCCCC-CCceEeC
Q 045323 336 VATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSK-EFNLTKLKRLNLDGNHFIGDIPKTLSNCS-ALQGLYI 413 (740)
Q Consensus 336 l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~~-~L~~L~l 413 (740)
+++|.+++..|..+..+. +|++|++++|.+.+..+.. +..+++|++|++++|.+.+.+|..+..++ +|++|++
T Consensus 301 Ls~n~l~~~~p~~~~~l~-----~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L 375 (768)
T 3rgz_A 301 LSGNHFYGAVPPFFGSCS-----LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDL 375 (768)
T ss_dssp CCSSEEEECCCGGGGGCT-----TCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEEC
T ss_pred CcCCcCCCccchHHhcCC-----CccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEc
Confidence 555554444444444333 4555555555444333322 44444555555555544444444444443 4555555
Q ss_pred CCcccccCCCcCCCC--CCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCC-CCcccEEEcCCCccc
Q 045323 414 SDNNISGNIPTRLGN--LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSS-PFNIRRVHLSKNMLQ 490 (740)
Q Consensus 414 ~~n~i~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~-~~~L~~L~l~~n~i~ 490 (740)
++|.+.+..+..+.. +++|++|++++|.+++..|..+.++++|++|++++|.+.+..|.... +++|+.|++++|.++
T Consensus 376 s~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~ 455 (768)
T 3rgz_A 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455 (768)
T ss_dssp CSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCccc
Confidence 555444444444333 44455555555544444444444445555555555544443333222 444555555444444
Q ss_pred CcCc-----------cccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccc
Q 045323 491 GPLL-----------GDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLY 559 (740)
Q Consensus 491 ~~~~-----------~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~ 559 (740)
+..+ +++++|++++.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++.+.+|..+.
T Consensus 456 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 535 (768)
T 3rgz_A 456 GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELG 535 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHc
Confidence 3221 34444455567788888899999999999999988888899999999999999999888887665
Q ss_pred ccc---cccccCCCCccCCCchhhccchhhHHhhhcc-cccceeeeee------------eccccceeecccCCCccEEE
Q 045323 560 NIS---FNYREDNHDLFDQDPQILYQLPQLQILYTNY-HNHKYLTNFT------------TKQRLYTYEVQPLHSMSGLD 623 (740)
Q Consensus 560 ~l~---~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~------------~~~~~~~~~~~~~~~L~~L~ 623 (740)
.+. ...+..+.... ..+..+..+..+..+.... .......... .........+..++.+..++
T Consensus 536 ~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 536 DCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccc
Confidence 543 11111111111 1111111111111110000 0000000000 00000111223345566677
Q ss_pred cccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCccccc
Q 045323 624 LSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 624 ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 703 (740)
++.+.+.|.+|..+..+++|+.|+|++|++++.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|||++|+++|
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred cccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCccccccccCCCCC
Q 045323 704 KTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 704 ~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
.+|..++.+++|+++++++|+..-
T Consensus 695 ~ip~~l~~l~~L~~L~ls~N~l~g 718 (768)
T 3rgz_A 695 RIPQAMSALTMLTEIDLSNNNLSG 718 (768)
T ss_dssp CCCGGGGGCCCCSEEECCSSEEEE
T ss_pred cCChHHhCCCCCCEEECcCCcccc
Confidence 999999999999999999998753
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.6e-58 Score=522.95 Aligned_cols=572 Identities=24% Similarity=0.238 Sum_probs=413.6
Q ss_pred ceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCC
Q 045323 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLN 121 (740)
Q Consensus 42 ~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 121 (740)
+++.+|+++|.+ ..++...|.++++|++||++++++. +..|..++.+++|++|++++|.++
T Consensus 26 ~l~~L~Ls~n~l-----~~~~~~~~~~l~~L~~L~Ls~n~l~--------------~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 26 NITVLNLTHNQL-----RRLPAANFTRYSQLTSLDVGFNTIS--------------KLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp TCSEEECCSSCC-----CCCCGGGGGGGTTCSEEECCSSCCC--------------CCCTTHHHHCTTCCEEECCSSCCC
T ss_pred CCcEEECCCCCC-----CCcCHHHHhCCCcCcEEECCCCccC--------------ccCHHHHhcccCcCEEECCCCccC
Confidence 455555555555 2344445555555555555544332 222344555666666666666655
Q ss_pred CccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCcc
Q 045323 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLE 201 (740)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~ 201 (740)
.++...|.++++|++|++++|.+++..+.+|+++++|++|++++|.+++..+. .+.++++|++|++++|.+++ ++..
T Consensus 87 -~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~-~~~~ 163 (680)
T 1ziw_A 87 -QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG-TQVQLENLQELLLSNNKIQA-LKSE 163 (680)
T ss_dssp -CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC-SSSCCTTCCEEECCSSCCCC-BCHH
T ss_pred -ccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCch-hhcccccCCEEEccCCcccc-cCHH
Confidence 44444466666666666666666555555566666666666666665553333 45566666666666665542 1111
Q ss_pred ccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHh--cC
Q 045323 202 PFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLE--KN 279 (740)
Q Consensus 202 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~--~~ 279 (740)
.+ ......+|+.|++++|.+.+..+..+..+++|+.|+++++.+.......+.. ..
T Consensus 164 ~~----------------------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~ 221 (680)
T 1ziw_A 164 EL----------------------DIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELAN 221 (680)
T ss_dssp HH----------------------GGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTT
T ss_pred Hh----------------------hccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhh
Confidence 11 1122347888888888888888888888889999999888765332222211 34
Q ss_pred CCCCEEEccCCcccccCCCCCCCCCC--CCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCcccc
Q 045323 280 KKLKRLSLVNISLFGPFPLPIHCHKN--LRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGC 357 (740)
Q Consensus 280 ~~L~~L~L~~~~~~~~~~~~l~~~~~--L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~ 357 (740)
++|++|++++|.+.+..+..+..++. |++|++++|.+++..|..+.. +++|++|++++|.+.+..+..+..+.
T Consensus 222 ~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~---- 296 (680)
T 1ziw_A 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQHLFSHSLHGLF---- 296 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSCCBSEECTTTTTTCT----
T ss_pred ccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccC-cccccEeeCCCCccCccChhhhcCCC----
Confidence 78899999998888777777777654 999999999888555554444 78899999999988877777777655
Q ss_pred CCccEEEccCCCCCC-----cCc----ccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc--CCCcCC
Q 045323 358 FYLEYLVLSNNSLQG-----QLF----SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG--NIPTRL 426 (740)
Q Consensus 358 ~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~--~~~~~~ 426 (740)
+|++|++++|...+ ..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.. .....|
T Consensus 297 -~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f 375 (680)
T 1ziw_A 297 -NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375 (680)
T ss_dssp -TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTT
T ss_pred -CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhh
Confidence 79999998765432 112 256678889999999998888878888888999999998886432 222334
Q ss_pred CC--CCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC--CCCCCCcccEEEcCCCcccCcCccccCCCcC
Q 045323 427 GN--LSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRL 502 (740)
Q Consensus 427 ~~--l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 502 (740)
.. .++|+.|++++|.+++..+..|..+++|++|++++|.+.+.++ .+..+++|+.|++++|++.+
T Consensus 376 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~----------- 444 (680)
T 1ziw_A 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQ----------- 444 (680)
T ss_dssp GGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEE-----------
T ss_pred cccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcce-----------
Confidence 33 2578999999998888888888889999999999998876554 34558889999998887753
Q ss_pred CCCCCcccCCCCCCcEEecccCccc--ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhh
Q 045323 503 NSNIPDWMNRLPQLRYLILANNGLE--GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQIL 580 (740)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~ 580 (740)
..+..+..+++|+.|++++|.+. +..|..+..+++|+.|++++|.+++..|..+.+
T Consensus 445 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~-------------------- 502 (680)
T 1ziw_A 445 --LTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG-------------------- 502 (680)
T ss_dssp --CCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------
T ss_pred --eChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc--------------------
Confidence 34556778889999999998876 456778888999999999999887555444433
Q ss_pred ccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccCh--------hhhhcCCCCcEEECcCCc
Q 045323 581 YQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP--------LQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 581 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--------~~l~~l~~L~~L~L~~N~ 652 (740)
+++|+.|++++|++.+..+ ..|.++++|++|+|++|+
T Consensus 503 -----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~ 547 (680)
T 1ziw_A 503 -----------------------------------LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNG 547 (680)
T ss_dssp -----------------------------------CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC
T ss_pred -----------------------------------ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCC
Confidence 3489999999999875422 237889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCccc-CCCCccccccccCCCCCCcCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVA-QFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~-~~~~l~~l~l~~Np~~c~~~l 731 (740)
++...+..|+.+++|+.|+|++|++++..+..|..+++|+.|++++|++++.++..++ .+++|+.+++++|||.|+|++
T Consensus 548 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 548 FDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred CCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence 9977777899999999999999999977777889999999999999999999988777 789999999999999999986
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.1e-52 Score=471.91 Aligned_cols=518 Identities=19% Similarity=0.199 Sum_probs=413.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
+++++|++++|.++ .+++..|.++++|++|++++|.+++..|.+|+++++|++|++++|++++..+. .+.++++|++|
T Consensus 33 ~~l~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEE
T ss_pred CcCcEEEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEe
Confidence 47999999999998 56555899999999999999999988899999999999999999999875555 89999999999
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+++ ++...+ ..+.+|++|++++|.+.+.....+..+++|++|++++|.+
T Consensus 111 ~L~~n~i~~-l~~~~~------------------------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 165 (606)
T 3t6q_A 111 FFIQTGISS-IDFIPL------------------------HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAI 165 (606)
T ss_dssp ECTTSCCSC-GGGSCC------------------------TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCC
T ss_pred eccccCccc-CCcchh------------------------ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcc
Confidence 999999873 222223 3344777788888877774434444588899999999888
Q ss_pred CCCCChhHHhcCCCCC--EEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc--
Q 045323 268 TREFPNWLLEKNKKLK--RLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG-- 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~--~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~-- 343 (740)
.+..+.. +..+++|+ +|++++|.+....+..+.. .+|+.|++++|.. ++..+.. +.++....+....+.+
T Consensus 166 ~~~~~~~-~~~l~~L~~l~L~l~~n~l~~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~-l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 166 HYLSKED-MSSLQQATNLSLNLNGNDIAGIEPGAFDS-AVFQSLNFGGTQN---LLVIFKG-LKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CEECHHH-HHTTTTCCSEEEECTTCCCCEECTTTTTT-CEEEEEECTTCSC---HHHHHHH-TTTCEEEEEECCCCTTSC
T ss_pred cccChhh-hhhhcccceeEEecCCCccCccChhHhhh-ccccccccCCchh---HHHHhhh-ccccchhheechhhcccc
Confidence 8544444 47888888 8888888887766655544 5788999988862 2333222 4444333332222211
Q ss_pred ---cCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc
Q 045323 344 ---SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG 420 (740)
Q Consensus 344 ---~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~ 420 (740)
..+..+.... ..++++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+
T Consensus 240 ~~~i~~~~~~~l~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~ 315 (606)
T 3t6q_A 240 DEDISPAVFEGLC---EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN 315 (606)
T ss_dssp CCCCCGGGGGGGG---GSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB
T ss_pred ccccChhHhchhh---cCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc
Confidence 1111222211 126899999999998877777888999999999999887 667778889999999999999987
Q ss_pred CCCcCCCCCCCCCEEeCCCCcCcCCc-hhhhcCCCCCCEEECCCCcCcccC--C-CCCCCCcccEEEcCCCcccCcCccc
Q 045323 421 NIPTRLGNLSFLDAIMMPNNRLEGPI-PSAFCQLRHLEILDLSRNNISGSL--P-SCSSPFNIRRVHLSKNMLQGPLLGD 496 (740)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n~~~~~~--~-~~~~~~~L~~L~l~~n~i~~~~~~~ 496 (740)
..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+.. + .+..+++|++|++++|++.+
T Consensus 316 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----- 390 (606)
T 3t6q_A 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS----- 390 (606)
T ss_dssp GGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEE-----
T ss_pred CchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCc-----
Confidence 77788889999999999999887444 445888999999999999988653 3 45558899999999887753
Q ss_pred cCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+.+..|..+..
T Consensus 391 --------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--------------- 447 (606)
T 3t6q_A 391 --------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG--------------- 447 (606)
T ss_dssp --------ECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT---------------
T ss_pred --------CCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC---------------
Confidence 4466788899999999999999866554 4888999999999999987666654433
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc---ChhhhhcCCCCcEEECcCCc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE---IPLQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~---~~~~l~~l~~L~~L~L~~N~ 652 (740)
+++|+.|++++|++.+. .+..+..+++|++|+|++|+
T Consensus 448 ----------------------------------------l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~ 487 (606)
T 3t6q_A 448 ----------------------------------------LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCD 487 (606)
T ss_dssp ----------------------------------------CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSC
T ss_pred ----------------------------------------CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCc
Confidence 34899999999999763 33678999999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+++..|..|+.+++|++|+|++|++++.+|..+..++.| .|++++|++++.+|+.+..+++|+.+++++|||.|+|++
T Consensus 488 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 565 (606)
T 3t6q_A 488 LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSN 565 (606)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGG
T ss_pred cCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCc
Confidence 999999999999999999999999999999999999999 999999999999999899999999999999999999984
No 5
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.8e-52 Score=474.12 Aligned_cols=547 Identities=20% Similarity=0.187 Sum_probs=326.4
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
+++++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|.+++ ++...+.++++|++|
T Consensus 25 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ-LSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC-CCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc-cChhhhccCCCCCEE
Confidence 56777777777766 4444457777777777777777776666667777777777777777654 554456677777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+. .++...+.+++ +|++|++++|.+.+..+..++.+++|++|++++|.+
T Consensus 103 ~L~~n~l~-~~~~~~~~~l~------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 157 (680)
T 1ziw_A 103 HLMSNSIQ-KIKNNPFVKQK------------------------NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157 (680)
T ss_dssp ECCSSCCC-CCCSCTTTTCT------------------------TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCC
T ss_pred ECCCCccC-ccChhHccccC------------------------CCCEEECCCCcccccCchhhcccccCCEEEccCCcc
Confidence 77777665 33333333333 444444444544444445555555555555555555
Q ss_pred CCCCChhHH-hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhh--cCCCCcEEeccCCccccc
Q 045323 268 TREFPNWLL-EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGE--VLPNLVVLNVATNAFNGS 344 (740)
Q Consensus 268 ~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~--~l~~L~~L~l~~n~~~~~ 344 (740)
.+..+..+. ..+++|++|++++|.+....+..+..+++|+.|++.++.+.+.....+.. ..++|+.|++++|.+.+.
T Consensus 158 ~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~ 237 (680)
T 1ziw_A 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237 (680)
T ss_dssp CCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEE
T ss_pred cccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCccccc
Confidence 533333220 12355556666555555555555555555555655555443222111110 124566666666655555
Q ss_pred CCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCccccc----
Q 045323 345 IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISG---- 420 (740)
Q Consensus 345 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~---- 420 (740)
.+..+..+. .++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|...+
T Consensus 238 ~~~~~~~l~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~ 314 (680)
T 1ziw_A 238 SNTTFLGLK---WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL 314 (680)
T ss_dssp CTTTTGGGG---GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC----
T ss_pred ChhHhhccC---cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhccccc
Confidence 555444332 1236666666666555555555555666666666666555555555556666666665543221
Q ss_pred -CCC----cCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc--CCCCC---CCCcccEEEcCCCccc
Q 045323 421 -NIP----TRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS--LPSCS---SPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 421 -~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~--~~~~~---~~~~L~~L~l~~n~i~ 490 (740)
.+| ..|..+++|++|++++|.+.+..+..|.++++|++|++++|.+... ....+ ..++|+.|++++|+++
T Consensus 315 ~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~ 394 (680)
T 1ziw_A 315 ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKIS 394 (680)
T ss_dssp --CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCC
T ss_pred ccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCC
Confidence 111 2455556666666666666555555556666666666665543211 11111 1235555655555544
Q ss_pred CcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCC
Q 045323 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569 (740)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~ 569 (740)
+ ..+..+..+++|+.|++++|.+.+.++ ..+..+++|+.|++++|++.+..+.
T Consensus 395 ~-------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~------------- 448 (680)
T 1ziw_A 395 K-------------IESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRN------------- 448 (680)
T ss_dssp E-------------ECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTT-------------
T ss_pred e-------------EChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChh-------------
Confidence 2 233445555555555555555554333 3455555555555555554432222
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
.|..+++|+.+.+..+.+... ......+..+++|+.|++++|++.+..+..|..+++|++|+|+
T Consensus 449 ---------~~~~~~~L~~L~l~~n~l~~~-------~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls 512 (680)
T 1ziw_A 449 ---------SFALVPSLQRLMLRRVALKNV-------DSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQ 512 (680)
T ss_dssp ---------TTTTCTTCCEEECTTSCCBCT-------TCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred ---------hhhcCcccccchhcccccccc-------ccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCC
Confidence 222333444443333222110 0011234566799999999999998888889999999999999
Q ss_pred CCcCcccCC--------ccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccc
Q 045323 650 HNNLTGESP--------VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYE 721 (740)
Q Consensus 650 ~N~l~~~~~--------~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~ 721 (740)
+|++++..+ ..|+.+++|+.|+|++|+++...+..|..+++|+.|++++|++++.++..|..+++|+.|+++
T Consensus 513 ~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~ 592 (680)
T 1ziw_A 513 HNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQ 592 (680)
T ss_dssp SSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECC
Confidence 999986532 347889999999999999996555679999999999999999999999989999999999999
Q ss_pred cCCCC
Q 045323 722 GNPFL 726 (740)
Q Consensus 722 ~Np~~ 726 (740)
+|...
T Consensus 593 ~N~l~ 597 (680)
T 1ziw_A 593 KNLIT 597 (680)
T ss_dssp TSCCC
T ss_pred CCcCC
Confidence 99754
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.7e-52 Score=468.40 Aligned_cols=515 Identities=19% Similarity=0.157 Sum_probs=406.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|++++..|. .+.++++|++|
T Consensus 32 ~~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLK-ILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEE
T ss_pred CCcCEEECCCCCcC-EeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEE
Confidence 67888888888887 55555788888888899888888887788888888889998888888774454 78888888888
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.+.+ ++...+. .+.+|++|++++|.+.+ .+|..++++++|++|++++|.
T Consensus 110 ~L~~n~l~~-~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~ 164 (606)
T 3vq2_A 110 VAVETKLAS-LESFPIG------------------------QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNY 164 (606)
T ss_dssp ECTTSCCCC-SSSSCCT------------------------TCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSC
T ss_pred EccCCcccc-ccccccC------------------------CCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCc
Confidence 888888762 3322233 33467777777787765 468889999999999999999
Q ss_pred CCCCCChhHHhcCCC----CCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCccc
Q 045323 267 LTREFPNWLLEKNKK----LKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~----L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 342 (740)
+.+..+..+ ..+++ +++|++++|.+....+..+... +|+.|++++|.+.+.........++.++.+++..+.+.
T Consensus 165 l~~~~~~~~-~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 242 (606)
T 3vq2_A 165 IQTITVNDL-QFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242 (606)
T ss_dssp CCEECTTTT-HHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCT
T ss_pred ceecChhhh-hhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccc
Confidence 986555543 44444 4589999999876666555554 89999999998864444444444888888887654433
Q ss_pred ccC------CCCccCcCccccCCccEEEc-cCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCC
Q 045323 343 GSI------PSSFGNTWPWGCFYLEYLVL-SNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISD 415 (740)
Q Consensus 343 ~~~------~~~~~~~~~~~~~~L~~L~l-~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~ 415 (740)
+.. +..+..+. .-.++.+++ ..+.+.+..+. +..+++|+.|++++|.+.. ++ .+..+++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~l~---~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~ 316 (606)
T 3vq2_A 243 DERNLEIFEPSIMEGLC---DVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIR 316 (606)
T ss_dssp TSCCCSCCCGGGGTTGG---GSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEES
T ss_pred cCCcccccChHHhhhhh---hccHhheeccccccccccccc-cccCCCCCEEEecCccchh-hh-hccccccCCEEEccc
Confidence 211 11111111 114777777 56677766665 8888999999999998864 44 678889999999999
Q ss_pred cccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc---CCCCCCCCcccEEEcCCCcccCc
Q 045323 416 NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS---LPSCSSPFNIRRVHLSKNMLQGP 492 (740)
Q Consensus 416 n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~---~~~~~~~~~L~~L~l~~n~i~~~ 492 (740)
|.+. .+| .+ .+++|++|++++|..... ..+..+++|++|++++|.+.+. ...+..+++|+.|++++|.++
T Consensus 317 n~l~-~lp-~~-~l~~L~~L~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~-- 389 (606)
T 3vq2_A 317 CQLK-QFP-TL-DLPFLKSLTLTMNKGSIS--FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-- 389 (606)
T ss_dssp CCCS-SCC-CC-CCSSCCEEEEESCSSCEE--CCCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEE--
T ss_pred ccCc-ccc-cC-CCCccceeeccCCcCccc--hhhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccc--
Confidence 9994 667 45 899999999999965432 2567899999999999998765 233445889999999999876
Q ss_pred CccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCC
Q 045323 493 LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHD 571 (740)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~ 571 (740)
.+|..+..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..
T Consensus 390 ------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------- 446 (606)
T 3vq2_A 390 ------------IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG----------- 446 (606)
T ss_dssp ------------EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-----------
T ss_pred ------------cchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-----------
Confidence 345678889999999999999987766 57889999999999999988766654443
Q ss_pred ccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccc-cChhhhhcCCCCcEEECcC
Q 045323 572 LFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG-EIPLQIGELSRIHTLNLSH 650 (740)
Q Consensus 572 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~ 650 (740)
+++|+.|++++|++.+ ..|..|..+++|++|+|++
T Consensus 447 --------------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 447 --------------------------------------------LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp --------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred --------------------------------------------CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCC
Confidence 3489999999999987 4788899999999999999
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCC-CccccccccCCCCCCc
Q 045323 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFG-TFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 651 N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~-~l~~l~l~~Np~~c~~ 729 (740)
|++++..|..|+.+++|++|++++|++++.+|..+..+++|+.|++++|+++..++. +..++ +|+++++++|||.|+|
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~-~~~l~~~L~~l~l~~N~~~c~c 561 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI-LQHFPKSLAFFNLTNNSVACIC 561 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC-GGGSCTTCCEEECCSCCCCCSS
T ss_pred CcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh-HhhhcccCcEEEccCCCcccCC
Confidence 999999999999999999999999999998899999999999999999999965544 78886 6999999999999999
Q ss_pred CCC
Q 045323 730 PLL 732 (740)
Q Consensus 730 ~l~ 732 (740)
++.
T Consensus 562 ~~~ 564 (606)
T 3vq2_A 562 EHQ 564 (606)
T ss_dssp TTH
T ss_pred ccH
Confidence 863
No 7
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.2e-51 Score=476.98 Aligned_cols=501 Identities=23% Similarity=0.188 Sum_probs=379.0
Q ss_pred cchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCc-ccc
Q 045323 100 FLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISS-SPL 178 (740)
Q Consensus 100 ~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~-~~l 178 (740)
.+..+..+++|++|++++|...+.++...|.++++|++|+|++|.+++..|.+|+++++|++|++++|.+++.++. ..+
T Consensus 40 ~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~ 119 (844)
T 3j0a_A 40 TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYF 119 (844)
T ss_dssp CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCC
T ss_pred ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccc
Confidence 3445566777777777777555566555677777777777777777777777777777777777777777664443 136
Q ss_pred CCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCC
Q 045323 179 MNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLE 258 (740)
Q Consensus 179 ~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 258 (740)
.++++|++|++++|.+.+.. .+..++++++|+
T Consensus 120 ~~L~~L~~L~Ls~N~l~~~~------------------------------------------------~~~~~~~L~~L~ 151 (844)
T 3j0a_A 120 RNLKALTRLDLSKNQIRSLY------------------------------------------------LHPSFGKLNSLK 151 (844)
T ss_dssp SSCSSCCEEEEESCCCCCCC------------------------------------------------CCGGGGTCSSCC
T ss_pred cccCCCCEEECCCCcccccc------------------------------------------------cchhHhhCCCCC
Confidence 67777777777777665221 123455666666
Q ss_pred EEEcCCCCCCCCCChhHHhcC--CCCCEEEccCCcccccCCCCCCCCCC------CCEEEccCCcccccCchhhhhcC--
Q 045323 259 YVDLSHLNLTREFPNWLLEKN--KKLKRLSLVNISLFGPFPLPIHCHKN------LRVLDVSNNKLQGHIPIEIGEVL-- 328 (740)
Q Consensus 259 ~L~L~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~~~~------L~~L~l~~~~l~~~~~~~~~~~l-- 328 (740)
+|++++|.+.+..+..+ ..+ ++|+.|++++|.+....+..+..+++ |+.|++++|.+++..+..+...+
T Consensus 152 ~L~Ls~N~i~~~~~~~l-~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~ 230 (844)
T 3j0a_A 152 SIDFSSNQIFLVCEHEL-EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISK 230 (844)
T ss_dssp EEEEESSCCCCCCSGGG-HHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCS
T ss_pred EEECCCCcCCeeCHHHc-ccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCc
Confidence 66666666665555443 333 66666666666665555554444443 88888888877766666655432
Q ss_pred CCCcEEeccCCcc---------cccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCC
Q 045323 329 PNLVVLNVATNAF---------NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP 399 (740)
Q Consensus 329 ~~L~~L~l~~n~~---------~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 399 (740)
..++.+.+..+.+ .+.....+... .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+
T Consensus 231 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l---~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~ 307 (844)
T 3j0a_A 231 SQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL---ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD 307 (844)
T ss_dssp CCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT---TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT
T ss_pred ccccceecccccccccccccccCCCChhhhhcc---ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh
Confidence 3566777663322 22222223322 23589999999999998888888999999999999999998888
Q ss_pred cCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcc
Q 045323 400 KTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNI 479 (740)
Q Consensus 400 ~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L 479 (740)
..+..+++|++|++++|.+.+..+..|..+++|+.|++++|.+....+..|.++++|++|++++|.+++.. .+++|
T Consensus 308 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~----~~~~L 383 (844)
T 3j0a_A 308 EAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH----FIPSI 383 (844)
T ss_dssp TTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCS----SCCSC
T ss_pred HHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCccc----CCCCc
Confidence 88999999999999999999888889999999999999999999888888999999999999999987432 27789
Q ss_pred cEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccc
Q 045323 480 RRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCL 558 (740)
Q Consensus 480 ~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~ 558 (740)
+.+++++|+++ .+|.. ..+++.|++++|++.+... ..+..+++|+.|++++|++.+..+...
T Consensus 384 ~~L~l~~N~l~--------------~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~ 446 (844)
T 3j0a_A 384 PDIFLSGNKLV--------------TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT 446 (844)
T ss_dssp SEEEEESCCCC--------------CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS
T ss_pred chhccCCCCcc--------------ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc
Confidence 99999999876 33332 4679999999999985432 345689999999999999874433210
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-----ccC
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-----GEI 633 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-----~~~ 633 (740)
...+++|+.|++++|.+. +..
T Consensus 447 ------------------------------------------------------~~~~~~L~~L~Ls~N~l~~~~~~~~~ 472 (844)
T 3j0a_A 447 ------------------------------------------------------PSENPSLEQLFLGENMLQLAWETELC 472 (844)
T ss_dssp ------------------------------------------------------SCSCTTCCBCEEESCCCSSSCCSCCC
T ss_pred ------------------------------------------------------cccCCccccccCCCCccccccccccc
Confidence 122458999999999986 344
Q ss_pred hhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCC
Q 045323 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFG 713 (740)
Q Consensus 634 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~ 713 (740)
+..|.++++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+. ++|+.|++++|++++.+|+.+ .
T Consensus 473 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~ 547 (844)
T 3j0a_A 473 WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---V 547 (844)
T ss_dssp SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---S
T ss_pred hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---C
Confidence 56788999999999999999999999999999999999999999977777666 899999999999999999754 5
Q ss_pred CccccccccCCCCCCcCCC
Q 045323 714 TFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 714 ~l~~l~l~~Np~~c~~~l~ 732 (740)
+|+.+++++|||.|+|++.
T Consensus 548 ~L~~l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 548 SLSVLDITHNKFICECELS 566 (844)
T ss_dssp SCCEEEEEEECCCCSSSCC
T ss_pred CcCEEEecCCCcccccccH
Confidence 8899999999999999864
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-50 Score=454.99 Aligned_cols=519 Identities=20% Similarity=0.168 Sum_probs=417.6
Q ss_pred CCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEE
Q 045323 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162 (740)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 162 (740)
+++++|+++ .+.+.+..+..+..+++|++|++++|.+. .+.+..|.++++|++|++++|.+++..|.+|+++++|++|
T Consensus 33 ~~l~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFS-FNVLPTIQNTTFSRLINLTFLDLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECT-TCCCSEECTTTSTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEcc-CCccCcCChhHhccCccceEEECCCCccc-eeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 456777777 66677666788899999999999999998 4544589999999999999999998889999999999999
Q ss_pred EcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCC
Q 045323 163 DVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHG 242 (740)
Q Consensus 163 ~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 242 (740)
++++|++++ ++...+.++++|++|++++|.+.+ ++.. .+.++.+|+.|++++|.
T Consensus 111 ~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~-~~~~------------------------~~~~l~~L~~L~L~~n~ 164 (606)
T 3t6q_A 111 FFIQTGISS-IDFIPLHNQKTLESLYLGSNHISS-IKLP------------------------KGFPTEKLKVLDFQNNA 164 (606)
T ss_dssp ECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCC-CCCC------------------------TTCCCTTCCEEECCSSC
T ss_pred eccccCccc-CCcchhccCCcccEEECCCCcccc-cCcc------------------------cccCCcccCEEEcccCc
Confidence 999999987 433378999999999999999873 2211 22234578888888888
Q ss_pred CCCCCChhhcCCCCCC--EEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCC--CEEEccCC---c
Q 045323 243 DSGIFPKFLYHQHDLE--YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNL--RVLDVSNN---K 315 (740)
Q Consensus 243 ~~~~~~~~l~~l~~L~--~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L--~~L~l~~~---~ 315 (740)
+.+..+..++.+++|+ .|++++|.+.+..|..+ ...+|++|+++++.... ..+..+.++ +.+.+... .
T Consensus 165 l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~--~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~l~~~~~~~~~ 239 (606)
T 3t6q_A 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF--DSAVFQSLNFGGTQNLL---VIFKGLKNSTIQSLWLGTFEDMD 239 (606)
T ss_dssp CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT--TTCEEEEEECTTCSCHH---HHHHHTTTCEEEEEECCCCTTSC
T ss_pred ccccChhhhhhhcccceeEEecCCCccCccChhHh--hhccccccccCCchhHH---HHhhhccccchhheechhhcccc
Confidence 8877788888888888 88999998886655543 45688899998876322 122222222 23333221 1
Q ss_pred ccccCchhhhhcCC--CCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCc
Q 045323 316 LQGHIPIEIGEVLP--NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH 393 (740)
Q Consensus 316 l~~~~~~~~~~~l~--~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 393 (740)
.. .++...+..+. +|+.+++++|.+.+..+..+..+. +|++|++++|.++ ..|..+..+++|++|++++|.
T Consensus 240 ~~-~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~-----~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 240 DE-DISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS-----GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANK 312 (606)
T ss_dssp CC-CCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCT-----TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCC
T ss_pred cc-ccChhHhchhhcCceeEEEeecCccCccCHHHhcccc-----CCCEEeccCCccC-CCChhhcccccCCEEECccCC
Confidence 11 22222222222 789999999999877777677655 8999999999998 566778889999999999999
Q ss_pred ceecCCcCCCCCCCCceEeCCCcccccCCC-cCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccC
Q 045323 394 FIGDIPKTLSNCSALQGLYISDNNISGNIP-TRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSL 470 (740)
Q Consensus 394 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~ 470 (740)
+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..
T Consensus 313 l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 392 (606)
T 3t6q_A 313 FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLK 392 (606)
T ss_dssp CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEEC
T ss_pred cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCC
Confidence 988878888999999999999998875554 45889999999999999998665 678899999999999999998776
Q ss_pred CCCC-CCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 471 PSCS-SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 471 ~~~~-~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
+... .+++|+.|++++|++++. ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|+
T Consensus 393 ~~~~~~l~~L~~L~l~~n~l~~~------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 393 TEAFKECPQLELLDLAFTRLKVK------------DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTTTTTCTTCSEEECTTCCEECC------------TTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred HHHhcCCccCCeEECCCCcCCCc------------ccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6554 489999999999988642 123457889999999999999998888889999999999999999
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
+.+..+.. ...+..+++|+.|++++|++
T Consensus 461 l~~~~~~~----------------------------------------------------~~~~~~l~~L~~L~Ls~n~l 488 (606)
T 3t6q_A 461 FPKGNIQK----------------------------------------------------TNSLQTLGRLEILVLSFCDL 488 (606)
T ss_dssp CGGGEECS----------------------------------------------------SCGGGGCTTCCEEECTTSCC
T ss_pred CCcccccc----------------------------------------------------chhhccCCCccEEECCCCcc
Confidence 86421110 01133456999999999999
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
.+..|..|..+++|++|+|++|++++..|..|..+++| .|++++|++++.+|..+..+++|+.|++++|++.+.-+
T Consensus 489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 564 (606)
T 3t6q_A 489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS 564 (606)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence 98899999999999999999999999999999999999 99999999998888899999999999999999987544
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.3e-48 Score=440.96 Aligned_cols=502 Identities=19% Similarity=0.136 Sum_probs=337.5
Q ss_pred chhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCC
Q 045323 101 LQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMN 180 (740)
Q Consensus 101 ~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~ 180 (740)
+..+..+++|++|++++|.++ .+++..|.++++|++|++++|.+++..|.+|+++++|++|++++|++++ ++...+.+
T Consensus 49 ~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~ 126 (606)
T 3vq2_A 49 SYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS-LESFPIGQ 126 (606)
T ss_dssp TTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCC-SSSSCCTT
T ss_pred hhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccc-ccccccCC
Confidence 344555667777777776665 3433356666777777777776666666666777777777777776655 33225666
Q ss_pred CCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCcc----ccEEEecCCCCCCCCChhhcCCCC
Q 045323 181 LTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQ----LTSISLFGHGDSGIFPKFLYHQHD 256 (740)
Q Consensus 181 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~----L~~L~l~~~~~~~~~~~~l~~l~~ 256 (740)
+++|++|++++|.+.+...+..+.++++|+.|+++...........+....+ ++.+++++|.+.+..+..+... +
T Consensus 127 l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~ 205 (606)
T 3vq2_A 127 LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-K 205 (606)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-E
T ss_pred CCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCc-e
Confidence 6777777777766653111233444443333333322111111111111111 2245555555444333333222 4
Q ss_pred CCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCC--CCcEE
Q 045323 257 LEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP--NLVVL 334 (740)
Q Consensus 257 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~--~L~~L 334 (740)
|++|++++|.+.+......+..++.++.+++....+... . .+. .++......+. .++.+
T Consensus 206 L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~----------~l~-~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 206 LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------R----------NLE-IFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp EEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------C----------CCS-CCCGGGGTTGGGSEEEEE
T ss_pred eeeeeccCCccchhHHHHHhccccccccccccccccccC--------C----------ccc-ccChHHhhhhhhccHhhe
Confidence 555555555444222222234444444444432221100 0 000 11111111111 45566
Q ss_pred ec-cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeC
Q 045323 335 NV-ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYI 413 (740)
Q Consensus 335 ~l-~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l 413 (740)
++ ..+.+.+..+. +..+ ++|++|++++|.+.. .+ .+..+++|++|++++|.+ +.+| .+ .+++|++|++
T Consensus 267 ~l~~~~~~~~~~~~-~~~l-----~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l 335 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCL-----ANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTL 335 (606)
T ss_dssp EECCCTTCCGGGGS-CGGG-----TTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEE
T ss_pred eccccccccccccc-cccC-----CCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeec
Confidence 66 55666655555 4443 378999999888864 33 677888899999999988 5666 44 8889999999
Q ss_pred CCcccccCCCcCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccC
Q 045323 414 SDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 414 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 491 (740)
++|...+.. .+..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+....+..+++|+.|++++|++.+
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~ 413 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKR 413 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEES
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCC
Confidence 998655433 5678899999999999887553 778889999999999999988766666678999999999998863
Q ss_pred cCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCC-CCccccccccccccCC
Q 045323 492 PLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQ-IPHCLYNISFNYREDN 569 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~~~~~~~ 569 (740)
..+ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+. +|..+.
T Consensus 414 -------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---------- 470 (606)
T 3vq2_A 414 -------------VTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA---------- 470 (606)
T ss_dssp -------------TTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT----------
T ss_pred -------------ccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhc----------
Confidence 233 5678899999999999999988888899999999999999998753 444333
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
.+++|+.|++++|++++..|..|..+++|++|+|+
T Consensus 471 ---------------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 505 (606)
T 3vq2_A 471 ---------------------------------------------NTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS 505 (606)
T ss_dssp ---------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ---------------------------------------------cCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence 34589999999999998899999999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC-cCceeeccCcccccCCC
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN-ALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~-~L~~L~ls~N~l~~~~~ 706 (740)
+|++++..|..|+.+++|++|++++|+++ .+|+.+..++ +|+.|++++|++.+.-+
T Consensus 506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 99999999999999999999999999999 6777788887 59999999999987554
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-46 Score=421.22 Aligned_cols=502 Identities=19% Similarity=0.195 Sum_probs=341.1
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
++++|++++|.++ .++...|.++++|++|++++|.+++..+.+|+++++|++|++++|++++ ++...+.++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCc-cCHhhhcCcccccccc
Confidence 4455555555544 3333345555555555555555554444445555555555555555443 2222445555555555
Q ss_pred ccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCCC
Q 045323 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 189 l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
+++|.+. .++...+ ..+.+|++|++++|.+.+ .+|..++++++|++|++++|.+
T Consensus 107 L~~n~l~-~l~~~~~------------------------~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l 161 (570)
T 2z63_A 107 AVETNLA-SLENFPI------------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161 (570)
T ss_dssp CTTSCCC-CSTTCSC------------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCC
T ss_pred ccccccc-cCCCccc------------------------cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcc
Confidence 5555443 1111111 122244444444444444 2577788888889999988888
Q ss_pred CCCCChhHHhcCCCC----CEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc
Q 045323 268 TREFPNWLLEKNKKL----KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L----~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 343 (740)
.+..+..+ ..+++| +++++++|.+....+..+... +|+.|++++|.............++.++...+....+..
T Consensus 162 ~~~~~~~~-~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 239 (570)
T 2z63_A 162 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239 (570)
T ss_dssp CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred ceecHHHc-cchhccchhhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence 75444443 566666 788888888877666666655 788888888754322222222336666655554332211
Q ss_pred cCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCC-cceecCCcCCCCCCCCceEeCCCcccccCC
Q 045323 344 SIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGN-HFIGDIPKTLSNCSALQGLYISDNNISGNI 422 (740)
Q Consensus 344 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~ 422 (740)
. . .++.+ ....+ ..+..+ .++.+++.++ .+.+..+..+..+++|++|++++|.+. .+
T Consensus 240 ~--~-----------~l~~~--~~~~~-----~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l 297 (570)
T 2z63_A 240 E--G-----------NLEKF--DKSAL-----EGLCNL-TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RV 297 (570)
T ss_dssp C--S-----------SCEEC--CTTTT-----GGGGGS-EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SC
T ss_pred c--h-----------hhhhc--chhhh-----cccccc-chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hh
Confidence 0 0 11111 11111 111111 2556666666 556666777777888888888888877 56
Q ss_pred CcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcC
Q 045323 423 PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRL 502 (740)
Q Consensus 423 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~ 502 (740)
|..+..+ +|++|++++|.+. .+|. ..+++|++|++++|.+.+..+. ..+++|+.|++++|.+++..
T Consensus 298 ~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~l~~~~--------- 363 (570)
T 2z63_A 298 KDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNGLSFKG--------- 363 (570)
T ss_dssp CBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSCCBEEE---------
T ss_pred hhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCccCccc---------
Confidence 7777777 8888888888877 3333 4678888888888887765555 56888899998888775321
Q ss_pred CCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhcc
Q 045323 503 NSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQ 582 (740)
Q Consensus 503 ~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~ 582 (740)
..+..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..|..
T Consensus 364 --~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~------------------------- 415 (570)
T 2z63_A 364 --CCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS------------------------- 415 (570)
T ss_dssp --EEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-------------------------
T ss_pred --cccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-------------------------
Confidence 1256677899999999999999855444 889999999999999987544421
Q ss_pred chhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCc-ccCCccc
Q 045323 583 LPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLT-GESPVTF 661 (740)
Q Consensus 583 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~-~~~~~~l 661 (740)
.+..+++|+.|++++|++.+..|..+..+++|++|+|++|+++ +.+|..+
T Consensus 416 -----------------------------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~ 466 (570)
T 2z63_A 416 -----------------------------VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466 (570)
T ss_dssp -----------------------------TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred -----------------------------hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhh
Confidence 1234458999999999999889999999999999999999998 5788999
Q ss_pred cCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 662 SHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 662 ~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
..+++|++|++++|++++..|..+..+++|+.|++++|++++.+|..+..+++|+++++++||+.|+|+..
T Consensus 467 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred hcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 99999999999999999888999999999999999999999999998999999999999999999999853
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.6e-47 Score=440.71 Aligned_cols=538 Identities=20% Similarity=0.142 Sum_probs=410.5
Q ss_pred ccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCccc-chhcccC
Q 045323 29 CQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSF-LQMSELM 107 (740)
Q Consensus 29 c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~-~~~l~~l 107 (740)
|.|..|.+ .+..++.+||++|.+ ..+.+..|..+++|++||++++.. .+.+ +..+..+
T Consensus 14 ~~L~~vP~--lp~~l~~LdLs~N~i-----~~i~~~~~~~l~~L~~LdLs~n~~--------------~~~i~~~~f~~L 72 (844)
T 3j0a_A 14 CNLTQVPQ--VLNTTERLLLSFNYI-----RTVTASSFPFLEQLQLLELGSQYT--------------PLTIDKEAFRNL 72 (844)
T ss_dssp CCSSCCCS--SCTTCCEEEEESCCC-----CEECSSSCSSCCSCSEEEECTTCC--------------CCEECTTTTSSC
T ss_pred CCCCCCCC--CCCCcCEEECCCCcC-----CccChhHCcccccCeEEeCCCCCC--------------ccccCHHHhcCC
Confidence 33555554 467899999999988 456667788888888888876532 2333 5677889
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCccccccccc--CcCCCCCCEEEcCCCCCCCCCCccccCCCCCCC
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWC--LANLTYLRLLDVSFNQLTENISSSPLMNLTYIE 185 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~ 185 (740)
++|++|+|++|.+. .+.+..|.++++|++|+|++|.+++..+.. |+++++|++|++++|.+++..+...+.++++|+
T Consensus 73 ~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~ 151 (844)
T 3j0a_A 73 PNLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK 151 (844)
T ss_dssp TTCCEEECTTCCCC-EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred CCCCEEECCCCcCc-ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence 99999999999998 443448999999999999999998766654 999999999999999998755544789999999
Q ss_pred EEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCC------CCE
Q 045323 186 ELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHD------LEY 259 (740)
Q Consensus 186 ~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~------L~~ 259 (740)
+|++++|.+.+.. ...+..+. ..+|+.|++++|.+.+..+..+..+++ |+.
T Consensus 152 ~L~Ls~N~i~~~~-~~~l~~l~----------------------~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~ 208 (844)
T 3j0a_A 152 SIDFSSNQIFLVC-EHELEPLQ----------------------GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEI 208 (844)
T ss_dssp EEEEESSCCCCCC-SGGGHHHH----------------------HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSE
T ss_pred EEECCCCcCCeeC-HHHccccc----------------------CCccceEECCCCccccccccchhhcCCccccCceeE
Confidence 9999999987432 22222220 026778888888877776666665554 999
Q ss_pred EEcCCCCCCCCCChhHHhcC--CCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhh-cCCCCcEEec
Q 045323 260 VDLSHLNLTREFPNWLLEKN--KKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGE-VLPNLVVLNV 336 (740)
Q Consensus 260 L~L~~~~~~~~~~~~~~~~~--~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~-~l~~L~~L~l 336 (740)
|++++|.+.+..+..+.... ..++.+.+..+..... +..+.+.+..+..+.. ..++|+.|++
T Consensus 209 L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~---------------~~~~~l~~~~~~~f~~l~~~~L~~L~L 273 (844)
T 3j0a_A 209 LDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---------------FGFHNIKDPDQNTFAGLARSSVRHLDL 273 (844)
T ss_dssp EBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS---------------SSCSSSTTGGGTTTTTTTTSCCCEEEC
T ss_pred EecCCCcCchhHHHHHHhhcCcccccceeccccccccc---------------ccccccCCCChhhhhccccCCccEEEC
Confidence 99999988877777654332 4566776664332110 1112222111111111 1368889999
Q ss_pred cCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCc
Q 045323 337 ATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDN 416 (740)
Q Consensus 337 ~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n 416 (740)
++|.+.+..+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|
T Consensus 274 s~n~l~~~~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 348 (844)
T 3j0a_A 274 SHGFVFSLNSRVFETLK-----DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348 (844)
T ss_dssp TTCCCCEECSCCSSSCC-----CCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSC
T ss_pred CCCcccccChhhhhcCC-----CCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCC
Confidence 99988877777777655 7999999999998877888888999999999999998888888899999999999999
Q ss_pred ccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccc
Q 045323 417 NISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGD 496 (740)
Q Consensus 417 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 496 (740)
.+....+..|..+++|+.|++++|.++.. ..+++|+.|++++|++. .++.. ..+++.+++++|++++.
T Consensus 349 ~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N~l~-~l~~~--~~~l~~L~ls~N~l~~l---- 416 (844)
T 3j0a_A 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTI-----HFIPSIPDIFLSGNKLV-TLPKI--NLTANLIHLSENRLENL---- 416 (844)
T ss_dssp CCCCCCSSCSCSCCCCCEEEEETCCSCCC-----SSCCSCSEEEEESCCCC-CCCCC--CTTCCEEECCSCCCCSS----
T ss_pred CCCccChhhhcCCCCCCEEECCCCCCCcc-----cCCCCcchhccCCCCcc-ccccc--ccccceeecccCccccC----
Confidence 99877777889999999999999988743 23789999999999988 33332 56788999999988643
Q ss_pred cCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 497 LSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 497 l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
..+..+..+++|+.|++++|++++..+. .+..+++|+.|++++|.+....+....
T Consensus 417 --------~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~---------------- 472 (844)
T 3j0a_A 417 --------DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELC---------------- 472 (844)
T ss_dssp --------TTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCC----------------
T ss_pred --------chhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccc----------------
Confidence 1233466899999999999999865433 456689999999999998743322110
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 655 (740)
...+..+++|+.|++++|++++..|..|..+++|++|+|++|++++
T Consensus 473 ----------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 518 (844)
T 3j0a_A 473 ----------------------------------WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV 518 (844)
T ss_dssp ----------------------------------SSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS
T ss_pred ----------------------------------hhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc
Confidence 0123445689999999999998889889999999999999999998
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 656 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
..+..+. ++|+.|+|++|++++.+|..+ .+|+.|++++|++...-+
T Consensus 519 l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 519 LSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECE 564 (844)
T ss_dssp CCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSS
T ss_pred cChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccc
Confidence 8887776 899999999999999888776 479999999999876433
No 12
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-47 Score=429.58 Aligned_cols=356 Identities=19% Similarity=0.250 Sum_probs=196.4
Q ss_pred CChhhcCCCCCCEEEcCCCCCCCC-----------------CChhHHh--cCCCCCEEEccCCcccccCCCCCCCCCCCC
Q 045323 247 FPKFLYHQHDLEYVDLSHLNLTRE-----------------FPNWLLE--KNKKLKRLSLVNISLFGPFPLPIHCHKNLR 307 (740)
Q Consensus 247 ~~~~l~~l~~L~~L~L~~~~~~~~-----------------~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 307 (740)
+|..++++++|++|++++|.+.+. +|..+ . .+++|++|++++|.+.+..|..+..+++|+
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ 276 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence 566667777777777777777653 55543 3 566666666666666666666666677777
Q ss_pred EEEccCCc-ccc-cCchhhhhc-----CCCCcEEeccCCcccccCCC--CccCcCccccCCccEEEccCCCCCCcCcccc
Q 045323 308 VLDVSNNK-LQG-HIPIEIGEV-----LPNLVVLNVATNAFNGSIPS--SFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE 378 (740)
Q Consensus 308 ~L~l~~~~-l~~-~~~~~~~~~-----l~~L~~L~l~~n~~~~~~~~--~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 378 (740)
+|++++|. +++ .+|..+... +++|++|++++|.++ .+|. .+..+. +|++|++++|.+.+.+| .+
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~-----~L~~L~L~~N~l~g~ip-~~ 349 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMK-----KLGMLECLYNQLEGKLP-AF 349 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCT-----TCCEEECCSCCCEEECC-CC
T ss_pred EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCC-----CCCEEeCcCCcCccchh-hh
Confidence 77777776 665 566655541 145555555555554 3443 333332 34444444444443333 44
Q ss_pred cCCCCCCeeecCCCcceecCCcCCCCCCC-CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCC
Q 045323 379 FNLTKLKRLNLDGNHFIGDIPKTLSNCSA-LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLE 457 (740)
Q Consensus 379 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~ 457 (740)
..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+..++ +++|+
T Consensus 350 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~----------------------l~~L~ 405 (636)
T 4eco_A 350 GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKS----------------------VSVMS 405 (636)
T ss_dssp EEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTC----------------------SSCEE
T ss_pred CCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcc----------------------cCccC
Confidence 44444444444444444 33333444444 444444444444 3333333322 12455
Q ss_pred EEECCCCcCcccCCCCC--------CCCcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccc
Q 045323 458 ILDLSRNNISGSLPSCS--------SPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEG 528 (740)
Q Consensus 458 ~L~l~~n~~~~~~~~~~--------~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~ 528 (740)
+|++++|.+.+..|... .+++|+.|++++|+++ .+| ..+..+++|++|++++|.++.
T Consensus 406 ~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~--------------~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS--------------KFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp EEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC--------------SCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred EEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC--------------cCCHHHHccCCCCCEEECCCCCCCC
Confidence 55555555443333211 2334455555444443 222 233445666666666666662
Q ss_pred cCCccccCC-------CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeee
Q 045323 529 EMPLQLCWL-------NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTN 601 (740)
Q Consensus 529 ~~~~~~~~l-------~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~ 601 (740)
..+..+... ++|+.|++++|.++ .+|..+..
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------------- 509 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------------- 509 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST-----------------------------------------
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh-----------------------------------------
Confidence 222222222 26667777766665 34432210
Q ss_pred eeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEEC------cCCcCcccCCccccCCCCCCEEeCCCC
Q 045323 602 FTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNL------SHNNLTGESPVTFSHMKQVESLDLSYN 675 (740)
Q Consensus 602 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L------~~N~l~~~~~~~l~~l~~L~~L~Ls~n 675 (740)
..+++|+.|++++|++.+ +|..+..+++|++|+| ++|++.+.+|..+..+++|++|+|++|
T Consensus 510 ------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N 576 (636)
T 4eco_A 510 ------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN 576 (636)
T ss_dssp ------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred ------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC
Confidence 123366677777777764 6666667777777777 456677777777777778888888888
Q ss_pred ccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
++. .+|..+. ++|+.|++++|++.....
T Consensus 577 ~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~~ 604 (636)
T 4eco_A 577 DIR-KVNEKIT--PNISVLDIKDNPNISIDL 604 (636)
T ss_dssp CCC-BCCSCCC--TTCCEEECCSCTTCEEEC
T ss_pred cCC-ccCHhHh--CcCCEEECcCCCCccccH
Confidence 774 6666554 677888888887765543
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=5.8e-46 Score=423.72 Aligned_cols=363 Identities=16% Similarity=0.193 Sum_probs=219.7
Q ss_pred cccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC-CCC-CCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 045323 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN-LTR-EFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309 (740)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~-~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 309 (740)
+|+.|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+. .++ ..+..+++|+.|
T Consensus 492 ~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~-----------------~~~~~l~~L~~L 553 (876)
T 4ecn_A 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLA-----------------DDEDTGPKIQIF 553 (876)
T ss_dssp TCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHH-----------------HCTTTTTTCCEE
T ss_pred CCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhh-----------------hcccccCCccEE
Confidence 34444444444444455555566666666666665 544 4444331 111 023344577777
Q ss_pred EccCCcccccCch--hhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCC-CCe
Q 045323 310 DVSNNKLQGHIPI--EIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTK-LKR 386 (740)
Q Consensus 310 ~l~~~~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~ 386 (740)
++++|.++ .+|. .+.. +++|+.|++++|.+. .+| .+..+. +|++|++++|.+. .+|..+..+++ |+.
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~-L~~L~~L~Ls~N~l~-~lp-~~~~L~-----~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~ 623 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQK-MVKLGLLDCVHNKVR-HLE-AFGTNV-----KLTDLKLDYNQIE-EIPEDFCAFTDQVEG 623 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTT-CTTCCEEECTTSCCC-BCC-CCCTTS-----EESEEECCSSCCS-CCCTTSCEECTTCCE
T ss_pred EeeCCcCC-ccCChhhhhc-CCCCCEEECCCCCcc-cch-hhcCCC-----cceEEECcCCccc-cchHHHhhccccCCE
Confidence 77777776 6666 4444 677777777777766 555 555443 6777777777777 55666677777 777
Q ss_pred eecCCCcceecCCcCCCCCC--CCceEeCCCcccccCCCcCC---C--CCCCCCEEeCCCCcCcCCchhhhcCCCCCCEE
Q 045323 387 LNLDGNHFIGDIPKTLSNCS--ALQGLYISDNNISGNIPTRL---G--NLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459 (740)
Q Consensus 387 L~l~~n~~~~~~~~~l~~~~--~L~~L~l~~n~i~~~~~~~~---~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 459 (740)
|++++|.+. .+|..+...+ +|+.|++++|.+.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|
T Consensus 624 L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L 702 (876)
T 4ecn_A 624 LGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTI 702 (876)
T ss_dssp EECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEE
T ss_pred EECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEE
Confidence 777777776 5565555543 37778888877775444221 2 23467777777777774444444567777777
Q ss_pred ECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcccc--C
Q 045323 460 DLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC--W 536 (740)
Q Consensus 460 ~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~ 536 (740)
++++|.+. .+|. ... ..+..+.++++|+.|++++|+++ .+|..+. .
T Consensus 703 ~Ls~N~L~-~ip~~~~~-----------------------------~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~ 751 (876)
T 4ecn_A 703 ILSNNLMT-SIPENSLK-----------------------------PKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATT 751 (876)
T ss_dssp ECCSCCCS-CCCTTSSS-----------------------------CTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTT
T ss_pred ECCCCcCC-ccChHHhc-----------------------------cccccccccCCccEEECCCCCCc-cchHHhhhcc
Confidence 77777666 2221 110 00011223446666666666666 4455444 5
Q ss_pred CCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccC
Q 045323 537 LNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPL 616 (740)
Q Consensus 537 l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 616 (740)
+++|+.|++++|++.+ +|..+.. +
T Consensus 752 l~~L~~L~Ls~N~L~~-lp~~l~~-------------------------------------------------------L 775 (876)
T 4ecn_A 752 LPYLSNMDVSYNCFSS-FPTQPLN-------------------------------------------------------S 775 (876)
T ss_dssp CTTCCEEECCSSCCSS-CCCGGGG-------------------------------------------------------C
T ss_pred CCCcCEEEeCCCCCCc-cchhhhc-------------------------------------------------------C
Confidence 6666666666666553 3332222 2
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++|+.|++++|+ ++++|++.+.+|..|..+++|+.|+|++|++ +.+|..+. ++|+.|+|
T Consensus 776 ~~L~~L~Ls~N~------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdL 834 (876)
T 4ecn_A 776 SQLKAFGIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDI 834 (876)
T ss_dssp TTCCEEECCCCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEEC
T ss_pred CCCCEEECCCCC------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEEC
Confidence 255555555544 3455777777787788888888888888888 46666654 57888888
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCC--CcCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC--GQPL 731 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c--~~~l 731 (740)
++|++....+..+.....+..+.+.+|++.| +|+-
T Consensus 835 s~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 835 ADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp CSCTTCEEECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCCCCccChHHccccccchheeecCCCccccCCCCC
Confidence 8888877777666555566677777777765 7763
No 14
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7e-46 Score=413.57 Aligned_cols=470 Identities=20% Similarity=0.201 Sum_probs=314.2
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.++ .++...|.++++|++|++++|++++..+.+|+++++|++|++++|++++ ++...+.++++|++|
T Consensus 26 ~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS-LSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCC-EECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS-CCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccC-ccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc-cCHHHhccCCCCcEE
Confidence 57777777777776 3433367777777777777777777666777777777777777777765 444357777777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
++++|.+.+. ..+..++.+++|++|++++|.+
T Consensus 104 ~Ls~n~l~~~------------------------------------------------~~~~~~~~l~~L~~L~L~~n~~ 135 (549)
T 2z81_A 104 NLMGNPYQTL------------------------------------------------GVTSLFPNLTNLQTLRIGNVET 135 (549)
T ss_dssp ECTTCCCSSS------------------------------------------------CSSCSCTTCTTCCEEEEEESSS
T ss_pred ECCCCccccc------------------------------------------------chhhhhhccCCccEEECCCCcc
Confidence 7777766421 1234556677788888888775
Q ss_pred CCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccC--
Q 045323 268 TREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSI-- 345 (740)
Q Consensus 268 ~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~-- 345 (740)
.+.++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+...+++|++|++++|.+.+..
T Consensus 136 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 214 (549)
T 2z81_A 136 FSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFS 214 (549)
T ss_dssp CCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCC
T ss_pred ccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCcccccccc
Confidence 44565444567888888888888887777888888889999999988876 667766666889999999999887532
Q ss_pred CCCccCcCccccCCccEEEccCCCCCCcCc----ccccCCCCCCeeecCCCcceecCC------cCCCCCCCCceEeCCC
Q 045323 346 PSSFGNTWPWGCFYLEYLVLSNNSLQGQLF----SKEFNLTKLKRLNLDGNHFIGDIP------KTLSNCSALQGLYISD 415 (740)
Q Consensus 346 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~------~~l~~~~~L~~L~l~~ 415 (740)
+..+.. .+++|++|++++|.+.+..+ ..+..+++|+.+++++|.+.+... ..+..+++++.|++.+
T Consensus 215 ~~~~~~----~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~ 290 (549)
T 2z81_A 215 PLPVDE----VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290 (549)
T ss_dssp CCSSCC----CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEES
T ss_pred ccchhh----hhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccc
Confidence 111111 23478888888887765332 233456778888888887654311 1234456666666666
Q ss_pred cccccCC-----CcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCccc
Q 045323 416 NNISGNI-----PTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 416 n~i~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~ 490 (740)
+.+.... +..+...++|+.|++++|.+.......+.++++|++|++++|.+.+..+.
T Consensus 291 ~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~------------------ 352 (549)
T 2z81_A 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLK------------------ 352 (549)
T ss_dssp CBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHH------------------
T ss_pred cccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCcccccccc------------------
Confidence 6544210 00111234555555555555522222224455555555555555432110
Q ss_pred CcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC--ccccCCCCCCEEEccCCcCcCCCCccccccccccccC
Q 045323 491 GPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP--LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRED 568 (740)
Q Consensus 491 ~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~ 568 (740)
.+..++.+++|++|++++|.+++..+ ..+..+++|+.|++++|++. .+|..+.
T Consensus 353 ---------------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~--------- 407 (549)
T 2z81_A 353 ---------------NSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQ--------- 407 (549)
T ss_dssp ---------------HHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCC---------
T ss_pred ---------------chhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhc---------
Confidence 01224556777777777777764322 34666777777777777765 3443222
Q ss_pred CCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEEC
Q 045323 569 NHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNL 648 (740)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L 648 (740)
.+++|+.|++++|++. .+|..+ .++|++|+|
T Consensus 408 ----------------------------------------------~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~L 438 (549)
T 2z81_A 408 ----------------------------------------------WPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDV 438 (549)
T ss_dssp ----------------------------------------------CCTTCCEEECTTSCCS-CCCTTS--CTTCSEEEC
T ss_pred ----------------------------------------------ccccccEEECCCCCcc-cccchh--cCCceEEEC
Confidence 2346777888888776 344333 268888888
Q ss_pred cCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCC
Q 045323 649 SHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 649 ~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
++|++++.. ..+++|++|+|++|+++ .+|+ ...+++|+.|++++|++++.+|..++.+++|+.+++++|||.|+
T Consensus 439 s~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 512 (549)
T 2z81_A 439 SNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 512 (549)
T ss_dssp CSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred CCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence 888888543 46788999999999998 5665 46788999999999999998888888999999999999999999
Q ss_pred cC
Q 045323 729 QP 730 (740)
Q Consensus 729 ~~ 730 (740)
|+
T Consensus 513 ~~ 514 (549)
T 2z81_A 513 CP 514 (549)
T ss_dssp HH
T ss_pred Cc
Confidence 97
No 15
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-43 Score=401.01 Aligned_cols=513 Identities=19% Similarity=0.149 Sum_probs=331.6
Q ss_pred CCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEe
Q 045323 109 SLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELW 188 (740)
Q Consensus 109 ~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~ 188 (740)
++++|||++|.|+ .+++.+|.++++|++|+|++|+|++..+.+|+++++|++|+|++|++++ ++...|.++++|++|+
T Consensus 53 ~~~~LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~-l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 53 STKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQKLV 130 (635)
T ss_dssp TCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE-ECGGGGTTCTTCCEEE
T ss_pred CCCEEEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC-CCHHHhcCCCCCCEEE
Confidence 3444444444444 3333344444444444444444444444444444444444444444433 3333344444444444
Q ss_pred ccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCCC
Q 045323 189 LSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLNL 267 (740)
Q Consensus 189 l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~~ 267 (740)
+++|.++ .++...+.+++ +|+.|++++|.+.. ..|..++.+++|++|++++|.+
T Consensus 131 Ls~N~l~-~l~~~~~~~L~------------------------~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLK------------------------TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCT------------------------TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCC-CCChhhhhcCc------------------------ccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 4444443 22222222222 33333333343332 2456677788888888888888
Q ss_pred CCCCChhHHhcCC----CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc
Q 045323 268 TREFPNWLLEKNK----KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG 343 (740)
Q Consensus 268 ~~~~~~~~~~~~~----~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~ 343 (740)
.+..+..+ ..+. ....++++.+.+....+..+ ....+..+++.++.....++......++.++...+..+....
T Consensus 186 ~~~~~~~l-~~L~~l~~~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~ 263 (635)
T 4g8a_A 186 QSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 263 (635)
T ss_dssp CEECGGGG-HHHHTCTTCCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTT
T ss_pred cccccccc-cchhhhhhhhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCccccccccccccccc
Confidence 75555443 3333 23467777777655444333 334567788887765544444444556666665554332211
Q ss_pred ------cCCCCccCcCccccCCccEEEccCCCCCC---cCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCC
Q 045323 344 ------SIPSSFGNTWPWGCFYLEYLVLSNNSLQG---QLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYIS 414 (740)
Q Consensus 344 ------~~~~~~~~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~ 414 (740)
.....+.. ...+...++..+.... .....+....+++.+.+.++.+....+ +.....++.|++.
T Consensus 264 ~~~l~~~~~~~~~~-----~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~~~~~L~~L~l~ 336 (635)
T 4g8a_A 264 EGNLEKFDKSALEG-----LCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELV 336 (635)
T ss_dssp SCCCSCCCTTTTGG-----GGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGG--GGSCCCCSEEEEE
T ss_pred cccccccccccccc-----ccchhhhhhhhhhhcccccchhhhhhhhcccccccccccccccccc--cccchhhhhhhcc
Confidence 11112222 2245555544433221 223344556778888888887765432 4455788888888
Q ss_pred CcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC---CCCCCCcccEEEcCCCcccC
Q 045323 415 DNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP---SCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 415 ~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~---~~~~~~~L~~L~l~~n~i~~ 491 (740)
+|.+..... ..+..|+.+.+..|..... .....+++|+.+++++|.+..... ......+|+.+++..+.+.
T Consensus 337 ~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~- 410 (635)
T 4g8a_A 337 NCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI- 410 (635)
T ss_dssp SCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-
T ss_pred cccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-
Confidence 888774433 3456788888888776532 234578889999999888763221 1223678888888887664
Q ss_pred cCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCC
Q 045323 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~ 570 (740)
..+..+..+++|+.++++.+......+ ..+..+++++.+++++|.+.+..|..+.
T Consensus 411 -------------~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~----------- 466 (635)
T 4g8a_A 411 -------------TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN----------- 466 (635)
T ss_dssp -------------EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT-----------
T ss_pred -------------cccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc-----------
Confidence 334556778899999998887764443 4577889999999999988755554333
Q ss_pred CccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-ccChhhhhcCCCCcEEECc
Q 045323 571 DLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-GEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 571 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~ 649 (740)
.++.++.|++++|.+. +..|..|..+++|++|+|+
T Consensus 467 --------------------------------------------~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 467 --------------------------------------------GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp --------------------------------------------TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred --------------------------------------------cchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 3348999999999754 4578889999999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCC-CCccccccccCCCCCC
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF-GTFEEDSYEGNPFLCG 728 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~-~~l~~l~l~~Np~~c~ 728 (740)
+|++++..|..|+.+++|++|+|++|+|++..|..|..+++|+.|++++|++++.+|..+..+ ++|+.|++++|||.|+
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 999999999999999999999999999998888999999999999999999999999999888 6899999999999999
Q ss_pred cCC
Q 045323 729 QPL 731 (740)
Q Consensus 729 ~~l 731 (740)
|.+
T Consensus 583 C~~ 585 (635)
T 4g8a_A 583 CEH 585 (635)
T ss_dssp GGG
T ss_pred CCc
Confidence 985
No 16
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=9e-44 Score=398.72 Aligned_cols=473 Identities=20% Similarity=0.176 Sum_probs=251.0
Q ss_pred hcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCC
Q 045323 103 MSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLT 182 (740)
Q Consensus 103 ~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~ 182 (740)
.+..+++|++|++++|.+. .++...|.++++|++|++++|.+++..+.+|+++++|++|++++|++++ ++...+++++
T Consensus 47 ~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~~~~~~l~ 124 (570)
T 2z63_A 47 SFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLAS-LENFPIGHLK 124 (570)
T ss_dssp TTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCC-STTCSCTTCT
T ss_pred HhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccccc-CCCccccccc
Confidence 3444556666666666554 3433355556666666666666555555556666666666666665544 3332455566
Q ss_pred CCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCC----C
Q 045323 183 YIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDL----E 258 (740)
Q Consensus 183 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L----~ 258 (740)
+|++|++++|.+.+...+..+.+++ +|++|++++|.+.+..+..++.+++| +
T Consensus 125 ~L~~L~L~~n~l~~~~lp~~~~~l~------------------------~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 125 TLKELNVAHNLIQSFKLPEYFSNLT------------------------NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCT------------------------TCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred cccEEecCCCccceecChhhhcccC------------------------CCCEEeCcCCccceecHHHccchhccchhhh
Confidence 6666666665554211112233333 33334444444433333444444444 4
Q ss_pred EEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccc-cCCCCCCCCCCCCEEEccCCcccc-----cCchhhhhcCC--C
Q 045323 259 YVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG-PFPLPIHCHKNLRVLDVSNNKLQG-----HIPIEIGEVLP--N 330 (740)
Q Consensus 259 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~-~~~~~l~~~~~L~~L~l~~~~l~~-----~~~~~~~~~l~--~ 330 (740)
.+++++|.+.+..+..+ .. .+|++|+++++.... ..+..+..+++++.+.+....+.. .++...+..++ .
T Consensus 181 ~L~l~~n~l~~~~~~~~-~~-~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~ 258 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAF-KE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258 (570)
T ss_dssp EEECTTCCCCEECTTTT-TT-CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSE
T ss_pred hcccCCCCceecCHHHh-cc-CcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccc
Confidence 55555555443333222 11 245555554442110 111222233333333322111100 11111111111 2
Q ss_pred CcEEeccCC-cccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCc
Q 045323 331 LVVLNVATN-AFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQ 409 (740)
Q Consensus 331 L~~L~l~~n-~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 409 (740)
++.+++.++ .+.+..+..+.... +|++|++++|.+.. .+..+..+ +|++|++++|.+. .+|. ..+++|+
T Consensus 259 l~~l~l~~~~~~~~~~~~~~~~l~-----~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~ 328 (570)
T 2z63_A 259 IEEFRLAYLDYYLDDIIDLFNCLT-----NVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLK 328 (570)
T ss_dssp EEEEEEEETTEEESCSTTTTGGGT-----TCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCC
T ss_pred hhhhhhhcchhhhhhchhhhcCcC-----cccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccC
Confidence 334444444 33333444443322 45555555555542 33334444 5555555555544 2222 2344555
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCc--hhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPI--PSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
+|++++|.+.+..+. ..+++|++|++++|.+++.. +..+.++++|++|++++|.+.+
T Consensus 329 ~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~------------------- 387 (570)
T 2z63_A 329 RLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT------------------- 387 (570)
T ss_dssp EEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEE-------------------
T ss_pred EEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccc-------------------
Confidence 555555554433222 34555555555555554322 3444455555555555554442
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYR 566 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~ 566 (740)
++..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+..
T Consensus 388 ------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------ 443 (570)
T 2z63_A 388 ------------------MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG------ 443 (570)
T ss_dssp ------------------EEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTT------
T ss_pred ------------------ccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhc------
Confidence 22335566777777777777765544 35667777777777777766554443332
Q ss_pred cCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc-ccChhhhhcCCCCcE
Q 045323 567 EDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI-GEIPLQIGELSRIHT 645 (740)
Q Consensus 567 ~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~-~~~~~~l~~l~~L~~ 645 (740)
+++|+.|++++|++. +.+|..+..+++|++
T Consensus 444 -------------------------------------------------l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~ 474 (570)
T 2z63_A 444 -------------------------------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474 (570)
T ss_dssp -------------------------------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCE
T ss_pred -------------------------------------------------CCcCcEEECcCCcCccccchhhhhcccCCCE
Confidence 337777777777776 457777888888888
Q ss_pred EECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCC
Q 045323 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 646 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
|+|++|++++..|..|..+++|++|++++|++++.+|..+..+++|+.|++++|++++..|.
T Consensus 475 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred EECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence 88888888877788888888888888888888877777788888888888888888877665
No 17
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.8e-43 Score=394.17 Aligned_cols=500 Identities=18% Similarity=0.172 Sum_probs=309.7
Q ss_pred CccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccC
Q 045323 28 CCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELM 107 (740)
Q Consensus 28 ~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l 107 (740)
.|.|.|+ |+. +++++ ..++...+ ++|++||++++++ .+..+..+..+
T Consensus 3 ~C~~~~~-c~~----------~~~~l-----~~ip~~~~---~~L~~L~Ls~n~l--------------~~~~~~~~~~l 49 (549)
T 2z81_A 3 SCDASGV-CDG----------RSRSF-----TSIPSGLT---AAMKSLDLSFNKI--------------TYIGHGDLRAC 49 (549)
T ss_dssp EECTTSE-EEC----------TTSCC-----SSCCSCCC---TTCCEEECCSSCC--------------CEECSSTTSSC
T ss_pred cCCCCce-EEC----------CCCcc-----ccccccCC---CCccEEECcCCcc--------------CccChhhhhcC
Confidence 4788887 743 44444 33444332 5666666666544 34445667789
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCC-CCCccccCCCCCCCE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTE-NISSSPLMNLTYIEE 186 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-~i~~~~l~~l~~L~~ 186 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..+..|+++++|++|++++|++++ .++. .+.++++|++
T Consensus 50 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~~l~~L~~ 127 (549)
T 2z81_A 50 ANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS-LFPNLTNLQT 127 (549)
T ss_dssp TTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSC-SCTTCTTCCE
T ss_pred CcccEEECCCCCcC-ccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhh-hhhccCCccE
Confidence 99999999999998 5555589999999999999999998888889999999999999999976 2344 7899999999
Q ss_pred EeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC
Q 045323 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 187 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 266 (740)
|++++|.+.+.++...+. .+.+|+.|++++|.+.+..|..++.+++|++|++++|.
T Consensus 128 L~L~~n~~~~~~~~~~~~------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 128 LRIGNVETFSEIRRIDFA------------------------GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp EEEEESSSCCEECTTTTT------------------------TCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred EECCCCccccccCHhhhh------------------------cccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 999999854444433333 34478888888888888888999999999999999998
Q ss_pred CCCCCChhHHhcCCCCCEEEccCCcccccC--C-CCCCCCCCCCEEEccCCcccccCchhhh---hcCCCCcEEeccCCc
Q 045323 267 LTREFPNWLLEKNKKLKRLSLVNISLFGPF--P-LPIHCHKNLRVLDVSNNKLQGHIPIEIG---EVLPNLVVLNVATNA 340 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~--~-~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~l~~L~~L~l~~n~ 340 (740)
+. .++..++..+++|++|++++|.+.+.. + .....+++|+.|++++|.+++..+..+. ..+++|+.+++++|.
T Consensus 184 ~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~ 262 (549)
T 2z81_A 184 SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCT 262 (549)
T ss_dssp ST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCE
T ss_pred cc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccccccc
Confidence 76 677777677999999999999886532 1 2334578899999999988865555443 235788888888887
Q ss_pred ccccCCCCccCc-CccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccc
Q 045323 341 FNGSIPSSFGNT-WPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNIS 419 (740)
Q Consensus 341 ~~~~~~~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~ 419 (740)
+.+......... ....+.+++.+++.++.+..... +.. .+..+...++|++|++++|.+.
T Consensus 263 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~-----------------l~~~~~~~~~L~~L~l~~n~l~ 323 (549)
T 2z81_A 263 LNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL--FYD-----------------LSTVYSLLEKVKRITVENSKVF 323 (549)
T ss_dssp EECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG--SCC-----------------CCHHHHHSTTCCEEEEESSCCC
T ss_pred ccccccccccchhhhhhhcccccccccccccchhhh--ccc-----------------chhhhhhcccceEEEeccCccc
Confidence 764221100000 00012245555555554432100 000 0000112245566666666555
Q ss_pred cCCCcCC-CCCCCCCEEeCCCCcCcCCchh---hhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCcc
Q 045323 420 GNIPTRL-GNLSFLDAIMMPNNRLEGPIPS---AFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLG 495 (740)
Q Consensus 420 ~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~---~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 495 (740)
.+|..+ ..+++|+.|++++|.+++..+. .+..+++|++|++++|++++..+
T Consensus 324 -~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------------------------ 378 (549)
T 2z81_A 324 -LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK------------------------ 378 (549)
T ss_dssp -CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHH------------------------
T ss_pred -cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccccccc------------------------
Confidence 334333 3456666666666665544332 24556666666666665542110
Q ss_pred ccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCC
Q 045323 496 DLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQ 575 (740)
Q Consensus 496 ~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~ 575 (740)
.+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+.+ +|..
T Consensus 379 ----------~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~------------------ 428 (549)
T 2z81_A 379 ----------TGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTC------------------ 428 (549)
T ss_dssp ----------HHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTT------------------
T ss_pred ----------chhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccch------------------
Confidence 0012333444555555555444 334444445555555555555431 1110
Q ss_pred CchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc
Q 045323 576 DPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG 655 (740)
Q Consensus 576 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~ 655 (740)
.+++|+.|++++|++++.. ..+++|++|+|++|+++
T Consensus 429 ---------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~- 464 (549)
T 2z81_A 429 ---------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK- 464 (549)
T ss_dssp ---------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-
T ss_pred ---------------------------------------hcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-
Confidence 0124555566666555322 34566666666666666
Q ss_pred cCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCC
Q 045323 656 ESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTP 706 (740)
Q Consensus 656 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~ 706 (740)
.+|. ...+++|+.|+|++|++++.+|..+..+++|+.|++++|++.+..|
T Consensus 465 ~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 465 TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 3343 2455666666666666665555566666666666666666655444
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=9.6e-45 Score=401.21 Aligned_cols=439 Identities=20% Similarity=0.180 Sum_probs=267.0
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|++++..|.+|+++++|++|++++|++++ +|. . .+++|++|
T Consensus 21 ~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISC-H--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EEC-C--CCCCCSEE
T ss_pred ccccEEECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCc-c--ccCCccEE
Confidence 45555555555554 3333345555555555555555555545555555555555555555542 443 1 44555555
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCC-CCChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSG-IFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.+. + .+|..++.+++|++|++++|.
T Consensus 96 ~L~~N~l~-------------------------------------------------~~~~p~~~~~l~~L~~L~L~~n~ 126 (520)
T 2z7x_B 96 DLSFNAFD-------------------------------------------------ALPICKEFGNMSQLKFLGLSTTH 126 (520)
T ss_dssp ECCSSCCS-------------------------------------------------SCCCCGGGGGCTTCCEEEEEESS
T ss_pred eccCCccc-------------------------------------------------cccchhhhccCCcceEEEecCcc
Confidence 55555443 2 245667777888888888887
Q ss_pred CCCCCChhHHhcCCCC--CEEEccCCcc--cccCCCCCCCCC-CCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcc
Q 045323 267 LTREFPNWLLEKNKKL--KRLSLVNISL--FGPFPLPIHCHK-NLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L--~~L~L~~~~~--~~~~~~~l~~~~-~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~ 341 (740)
+.+ .. +..+++| ++|++++|.+ ....|..+..+. +...+++++|.+.+.++...+..++
T Consensus 127 l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~------------ 190 (520)
T 2z7x_B 127 LEK---SS-VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVA------------ 190 (520)
T ss_dssp CCG---GG-GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCS------------
T ss_pred cch---hh-ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhhhhhhhhccc------------
Confidence 764 11 3455666 6666666665 444444443332 1223344444443333332222233
Q ss_pred cccCCCCccCcCccccCCccEEEccCCC-------CCCcCcccccCCCCCCeeecCCCcceecCCcCC---CCCCCCceE
Q 045323 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNS-------LQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTL---SNCSALQGL 411 (740)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l---~~~~~L~~L 411 (740)
+|+.+++++|. +.+..+ .+..+++|+.|++++|.+.+.....+ ...++|++|
T Consensus 191 -----------------~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 191 -----------------NLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp -----------------EEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred -----------------ceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 45555555554 332222 45566777777777766554211111 112477788
Q ss_pred eCCCcccccCCCcCC-----CCCCCCCEEeCCCCcCcCCchhhhcCC---CCCCEEECCCCcCcccCCCCCCCCcccEEE
Q 045323 412 YISDNNISGNIPTRL-----GNLSFLDAIMMPNNRLEGPIPSAFCQL---RHLEILDLSRNNISGSLPSCSSPFNIRRVH 483 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~ 483 (740)
++++|.+.+.+|..+ ..++.|+.+++++|.+ ......+..+ ++|+.|++++|.+....
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~------------- 318 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHML------------- 318 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCC-------------
T ss_pred EeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCcccccc-------------
Confidence 888887776677666 6777777777777777 2222333333 56777777777654211
Q ss_pred cCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcC--CCCcccccc
Q 045323 484 LSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG--QIPHCLYNI 561 (740)
Q Consensus 484 l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l 561 (740)
.+..+++|++|++++|.+++..|..+..+++|+.|++++|.+.+ .+|..
T Consensus 319 -------------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---- 369 (520)
T 2z7x_B 319 -------------------------CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM---- 369 (520)
T ss_dssp -------------------------CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH----
T ss_pred -------------------------chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH----
Confidence 01345666667777776666566666667777777777776652 11111
Q ss_pred ccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhh-hhcC
Q 045323 562 SFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ-IGEL 640 (740)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~-l~~l 640 (740)
+..+++|+.|++++|++.+.+|.. +..+
T Consensus 370 ---------------------------------------------------~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 370 ---------------------------------------------------TTQMKSLQQLDISQNSVSYDEKKGDCSWT 398 (520)
T ss_dssp ---------------------------------------------------HTTCTTCCEEECCSSCCBCCGGGCSCCCC
T ss_pred ---------------------------------------------------HhhCCCCCEEECCCCcCCcccccchhccC
Confidence 123446777777777777545543 6777
Q ss_pred CCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCcccccc
Q 045323 641 SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSY 720 (740)
Q Consensus 641 ~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l 720 (740)
++|++|+|++|++++..|..+. ++|+.|++++|+++ .+|+.+..+++|+.|++++|+++..++..+..+++|+++++
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l 475 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWL 475 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEEC
Confidence 8888888888888877776654 78899999999988 77777778899999999999988766655788889999999
Q ss_pred ccCCCCCCcCC
Q 045323 721 EGNPFLCGQPL 731 (740)
Q Consensus 721 ~~Np~~c~~~l 731 (740)
++||+.|+|++
T Consensus 476 ~~N~~~c~c~~ 486 (520)
T 2z7x_B 476 HTNPWDCSCPR 486 (520)
T ss_dssp CSSCBCCCHHH
T ss_pred cCCCCcccCCc
Confidence 99999999874
No 19
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=1.2e-40 Score=378.75 Aligned_cols=521 Identities=19% Similarity=0.160 Sum_probs=320.7
Q ss_pred ceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCC
Q 045323 42 KVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLN 121 (740)
Q Consensus 42 ~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~ 121 (740)
.++.|||++|.+ ..+++.+|.++++|++|||++|+++.+. +..+..+++|++|+|++|+++
T Consensus 53 ~~~~LdLs~N~i-----~~l~~~~f~~l~~L~~L~Ls~N~i~~i~--------------~~~f~~L~~L~~L~Ls~N~l~ 113 (635)
T 4g8a_A 53 STKNLDLSFNPL-----RHLGSYSFFSFPELQVLDLSRCEIQTIE--------------DGAYQSLSHLSTLILTGNPIQ 113 (635)
T ss_dssp TCCEEECTTSCC-----CEECTTTTTTCTTCCEEECTTCCCCEEC--------------TTTTTTCTTCCEEECTTCCCC
T ss_pred CCCEEEeeCCCC-----CCCCHHHHhCCCCCCEEECCCCcCCCcC--------------hhHhcCCCCCCEEEccCCcCC
Confidence 566777777766 4455666666666666666665543321 233445667777777777665
Q ss_pred CccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCC-CCccccCCCCCCCEEeccCCcccccCCc
Q 045323 122 GTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTEN-ISSSPLMNLTYIEELWLSNNHFQISISL 200 (740)
Q Consensus 122 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-i~~~~l~~l~~L~~L~l~~n~~~~~~~~ 200 (740)
.++...|.++++|++|++++|++++..+..|+++++|++|++++|++.+. ++. .+..+++|++|++++|.+++ +..
T Consensus 114 -~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~L~~N~l~~-~~~ 190 (635)
T 4g8a_A 114 -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPE-YFSNLTNLEHLDLSSNKIQS-IYC 190 (635)
T ss_dssp -EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCG-GGGGCTTCCEEECCSSCCCE-ECG
T ss_pred -CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCch-hhccchhhhhhcccCccccc-ccc
Confidence 55555566777777777777777665555667777777777777766542 233 55666777777777766652 222
Q ss_pred cccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCC
Q 045323 201 EPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNK 280 (740)
Q Consensus 201 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~ 280 (740)
..+..+.++.. ....++++.+.+....+..+ ....++.+++.++......+...+..+.
T Consensus 191 ~~l~~L~~l~~--------------------~~~~~~ls~n~l~~i~~~~~-~~~~~~~l~l~~n~~~~~~~~~~~~~l~ 249 (635)
T 4g8a_A 191 TDLRVLHQMPL--------------------LNLSLDLSLNPMNFIQPGAF-KEIRLHKLTLRNNFDSLNVMKTCIQGLA 249 (635)
T ss_dssp GGGHHHHTCTT--------------------CCCEEECTTCCCCEECTTTT-TTCEEEEEEEESCCSSHHHHHHHHHTTT
T ss_pred ccccchhhhhh--------------------hhhhhhcccCcccccCcccc-cchhhhhhhhhcccccccccchhhcCCc
Confidence 33332222110 22344455554444333222 2234455666655444333333344555
Q ss_pred CCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccc---cCCCCccCcCcccc
Q 045323 281 KLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNG---SIPSSFGNTWPWGC 357 (740)
Q Consensus 281 ~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~---~~~~~~~~~~~~~~ 357 (740)
.++...+......... .+. ............+....+..+.... .....+.. .
T Consensus 250 ~l~~~~l~~~~~~~~~------------------~l~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~-----~ 305 (635)
T 4g8a_A 250 GLEVHRLVLGEFRNEG------------------NLE-KFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNC-----L 305 (635)
T ss_dssp TCEEEEEEEECCTTSC------------------CCS-CCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGG-----G
T ss_pred cccccccccccccccc------------------ccc-cccccccccccchhhhhhhhhhhcccccchhhhhhh-----h
Confidence 5554444322111000 000 0000000112223333222221110 11111221 2
Q ss_pred CCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeC
Q 045323 358 FYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMM 437 (740)
Q Consensus 358 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l 437 (740)
.+++.+++.++.+... ..+.....++.|++.+|.+....+ ..++.|+.+++..+.+... .....+++|+.+++
T Consensus 306 ~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~l 378 (635)
T 4g8a_A 306 TNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDL 378 (635)
T ss_dssp TTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEEESCCSCCB--CCCCBCTTCCEEEC
T ss_pred cccccccccccccccc--cccccchhhhhhhcccccccCcCc---ccchhhhhcccccccCCCC--cccccccccccchh
Confidence 2566666666655432 223445667777777776654333 2345677777777765532 23446777888888
Q ss_pred CCCcCcC--CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCC
Q 045323 438 PNNRLEG--PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515 (740)
Q Consensus 438 ~~n~~~~--~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 515 (740)
+.|.+.. ..+..+..+.+|+.+++..+........+..+++|+.+++.++..... ..+..+..+++
T Consensus 379 s~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~------------~~~~~~~~l~~ 446 (635)
T 4g8a_A 379 SRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM------------SEFSVFLSLRN 446 (635)
T ss_dssp CSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEEST------------TSSCTTTTCTT
T ss_pred hccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccc------------ccccccccccc
Confidence 8777642 344556677888888888888776666666788888888887766432 22345677888
Q ss_pred CcEEecccCcccccCCccccCCCCCCEEEccCCcCcC-CCCccccccccccccCCCCccCCCchhhccchhhHHhhhccc
Q 045323 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSG-QIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYH 594 (740)
Q Consensus 516 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~ 594 (740)
++.++++.|.+....+..+..+++|+.|++++|.+.. ..|..|
T Consensus 447 l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~------------------------------------ 490 (635)
T 4g8a_A 447 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF------------------------------------ 490 (635)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCC------------------------------------
T ss_pred cccccccccccccccccccccchhhhhhhhhhcccccccCchhh------------------------------------
Confidence 9999999999887778888888999999999887542 233322
Q ss_pred ccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCC
Q 045323 595 NHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY 674 (740)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~ 674 (740)
..+++|+.||+++|++.+..|..|.++++|++|+|++|++++..|..|+.+++|+.|+|++
T Consensus 491 -------------------~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~ 551 (635)
T 4g8a_A 491 -------------------TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 551 (635)
T ss_dssp -------------------TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTT
T ss_pred -------------------hhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCC
Confidence 3345888999999999888888899999999999999999988888888999999999999
Q ss_pred CccCccCCcccccC-CcCceeeccCccccc
Q 045323 675 NNLNGKIPPRLIEL-NALAVFSVAFNNLSG 703 (740)
Q Consensus 675 n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~ 703 (740)
|++++..|..+..+ ++|+.|++++|++..
T Consensus 552 N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 552 NHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp SCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 99998888888887 689999999998864
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=7.7e-42 Score=377.96 Aligned_cols=373 Identities=17% Similarity=0.173 Sum_probs=225.2
Q ss_pred CCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEE
Q 045323 83 KNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLL 162 (740)
Q Consensus 83 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L 162 (740)
++|++|+++ .+.+.+..+..+..+++|++|++++|.++ .+++..|.++++|++|++++|+++. +|.. .+++|++|
T Consensus 21 ~~L~~L~Ls-~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L 95 (520)
T 2z7x_B 21 QKTTILNIS-QNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHL 95 (520)
T ss_dssp TTCSEEECC-SSCCCCCCHHHHTTCTTCCEEECCSSCCC-EEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEE
T ss_pred ccccEEECC-CCcccccChhhccccccccEEecCCCccC-CcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEE
Confidence 456667777 56666666788899999999999999998 4544489999999999999999994 5554 89999999
Q ss_pred EcCCCCCCC-CCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCC
Q 045323 163 DVSFNQLTE-NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGH 241 (740)
Q Consensus 163 ~l~~n~l~~-~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 241 (740)
++++|++++ .+|. .++++++|++|++++|.+.+
T Consensus 96 ~L~~N~l~~~~~p~-~~~~l~~L~~L~L~~n~l~~--------------------------------------------- 129 (520)
T 2z7x_B 96 DLSFNAFDALPICK-EFGNMSQLKFLGLSTTHLEK--------------------------------------------- 129 (520)
T ss_dssp ECCSSCCSSCCCCG-GGGGCTTCCEEEEEESSCCG---------------------------------------------
T ss_pred eccCCccccccchh-hhccCCcceEEEecCcccch---------------------------------------------
Confidence 999999987 3555 79999999999999998752
Q ss_pred CCCCCCChhhcCCCCC--CEEEcCCCCC--CCCCChhHHhcCC-CCCEEEccCCcccccC-CCCCCCCCCCCEEEccCCc
Q 045323 242 GDSGIFPKFLYHQHDL--EYVDLSHLNL--TREFPNWLLEKNK-KLKRLSLVNISLFGPF-PLPIHCHKNLRVLDVSNNK 315 (740)
Q Consensus 242 ~~~~~~~~~l~~l~~L--~~L~L~~~~~--~~~~~~~~~~~~~-~L~~L~L~~~~~~~~~-~~~l~~~~~L~~L~l~~~~ 315 (740)
..+..+++| ++|++++|.+ .+..|..+ ..+. +...+++++|.+.+.. ...+..+++|+.+++++|.
T Consensus 130 -------~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l-~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 201 (520)
T 2z7x_B 130 -------SSVLPIAHLNISKVLLVLGETYGEKEDPEGL-QDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201 (520)
T ss_dssp -------GGGGGGTTSCEEEEEEEECTTTTSSCCTTTT-TTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECC
T ss_pred -------hhccccccceeeEEEeecccccccccccccc-cccccceEEEEeccCcchhhhhhhhhhcccceeeccccccc
Confidence 123344556 9999999999 66666654 3333 2336677777765544 3456789999999999986
Q ss_pred -------ccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeee
Q 045323 316 -------LQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLN 388 (740)
Q Consensus 316 -------l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 388 (740)
+.+.++ .+.. +++|+.|++++|.+.+..+..+.... .+++|++|++++|.+.+..|..+...
T Consensus 202 ~~~~~~~~~~~~~-~l~~-l~~L~~L~l~~~~l~~~~~~~~~~~~--~~~~L~~L~l~~n~l~~~~p~~~~~~------- 270 (520)
T 2z7x_B 202 EDNKCSYFLSILA-KLQT-NPKLSNLTLNNIETTWNSFIRILQLV--WHTTVWYFSISNVKLQGQLDFRDFDY------- 270 (520)
T ss_dssp STTTTHHHHHHHH-GGGG-CTTCCEEEEEEEEEEHHHHHHHHHHH--HTSSCSEEEEEEEEEESCCCCCCCCC-------
T ss_pred cccccceeecchh-hhcc-ccchhhccccccccCHHHHHHHHHHh--hhCcccEEEeecccccCccccchhhc-------
Confidence 554444 3333 67788888877766543221111000 01245555555555554444444000
Q ss_pred cCCCcceecCCcCCCCCCCCceEeCCCcccccCCC-cCCCCC---CCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCC
Q 045323 389 LDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP-TRLGNL---SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRN 464 (740)
Q Consensus 389 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~-~~~~~l---~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n 464 (740)
....+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|
T Consensus 271 ------------~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 271 ------------SGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp ------------CSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ------------ccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 004444455555555444 122 222222 34555555555543221 1135556666666666
Q ss_pred cCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCc-cccCCCCCCE
Q 045323 465 NISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPL-QLCWLNKLQL 542 (740)
Q Consensus 465 ~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~ 542 (740)
.+.+..+.. ..+++|+.|++++|++++. +.+|..+..+++|++|++++|.+.+.+|. .+..+++|+.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l-----------~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKEL-----------SKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBH-----------HHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCcc-----------ccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 555322221 1233333333333333210 01234455566666666666666643332 3555566666
Q ss_pred EEccCCcCcC
Q 045323 543 VDLSHNNLSG 552 (740)
Q Consensus 543 L~l~~n~~~~ 552 (740)
|++++|.+++
T Consensus 404 L~Ls~N~l~~ 413 (520)
T 2z7x_B 404 LNMSSNILTD 413 (520)
T ss_dssp EECCSSCCCG
T ss_pred EECcCCCCCc
Confidence 6666665543
No 21
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.7e-42 Score=388.30 Aligned_cols=419 Identities=17% Similarity=0.224 Sum_probs=339.3
Q ss_pred cccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCC------CC------CCChhHHh----------------------
Q 045323 232 QLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNL------TR------EFPNWLLE---------------------- 277 (740)
Q Consensus 232 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~------~~------~~~~~~~~---------------------- 277 (740)
+++.|+++++.+.+.+|..++++++|++|++++|.+ .+ .+|.....
T Consensus 82 ~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~ 161 (636)
T 4eco_A 82 RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDL 161 (636)
T ss_dssp CEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHH
T ss_pred CEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHH
Confidence 799999999999999999999999999999999965 11 11111000
Q ss_pred -----------------cCCCCCEEEcc--CCcccccCCCCCCCCCCCCEEEccCCccccc-----------------Cc
Q 045323 278 -----------------KNKKLKRLSLV--NISLFGPFPLPIHCHKNLRVLDVSNNKLQGH-----------------IP 321 (740)
Q Consensus 278 -----------------~~~~L~~L~L~--~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~-----------------~~ 321 (740)
....++.+.+. .|.+.+ +|..+..+++|++|++++|.+++. +|
T Consensus 162 ~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 00112222222 345665 788899999999999999999864 88
Q ss_pred hhhh--hcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCC-CCC-cCcccccCC------CCCCeeecCC
Q 045323 322 IEIG--EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS-LQG-QLFSKEFNL------TKLKRLNLDG 391 (740)
Q Consensus 322 ~~~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~l------~~L~~L~l~~ 391 (740)
..+. . +++|++|++++|.+.+.+|..+..+. +|++|++++|. +++ ..|..+..+ ++|++|++++
T Consensus 241 ~~l~~~~-l~~L~~L~L~~n~l~~~~p~~l~~l~-----~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~ 314 (636)
T 4eco_A 241 EDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALP-----EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGY 314 (636)
T ss_dssp SCCCGGG-CTTCCEEEEECCTTCSSCCTTTTTCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCS
T ss_pred hhhhhcc-cCCCCEEEecCCcCCccChHHHhcCC-----CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCC
Confidence 8776 5 89999999999999989998888766 79999999998 887 677777665 8999999999
Q ss_pred CcceecCCc--CCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC-CCEEECCCCcCcc
Q 045323 392 NHFIGDIPK--TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH-LEILDLSRNNISG 468 (740)
Q Consensus 392 n~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~~ 468 (740)
|.+. .+|. .+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.+.
T Consensus 315 n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~- 390 (636)
T 4eco_A 315 NNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK- 390 (636)
T ss_dssp SCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-
T ss_pred CcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-
Confidence 9998 7777 78899999999999999998888 8889999999999999998 67778889998 999999999998
Q ss_pred cCCCCCC---CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccC-------CCCCCcEEecccCcccccCCccccCCC
Q 045323 469 SLPSCSS---PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN-------RLPQLRYLILANNGLEGEMPLQLCWLN 538 (740)
Q Consensus 469 ~~~~~~~---~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~-------~~~~L~~L~ls~n~l~~~~~~~~~~l~ 538 (740)
.+|.... +++|+.|++++|.+++ .+|..+. .+++|++|++++|.++...+..+..++
T Consensus 391 ~lp~~~~~~~l~~L~~L~Ls~N~l~~-------------~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~ 457 (636)
T 4eco_A 391 YIPNIFDAKSVSVMSAIDFSYNEIGS-------------VDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGS 457 (636)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTT-------------TTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTC
T ss_pred ccchhhhhcccCccCEEECcCCcCCC-------------cchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCC
Confidence 5555433 3489999999988764 3444454 678999999999999955445567789
Q ss_pred CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCC
Q 045323 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618 (740)
Q Consensus 539 ~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (740)
+|+.|++++|.+. .+|....... ......+++
T Consensus 458 ~L~~L~Ls~N~l~-~i~~~~~~~~-----------------------------------------------~~~~~~l~~ 489 (636)
T 4eco_A 458 PLSSINLMGNMLT-EIPKNSLKDE-----------------------------------------------NENFKNTYL 489 (636)
T ss_dssp CCSEEECCSSCCS-BCCSSSSEET-----------------------------------------------TEECTTGGG
T ss_pred CCCEEECCCCCCC-CcCHHHhccc-----------------------------------------------cccccccCC
Confidence 9999999999987 5554321100 001234458
Q ss_pred ccEEEcccCcccccChhhhh--cCCCCcEEECcCCcCcccCCccccCCCCCCEEeC------CCCccCccCCcccccCCc
Q 045323 619 MSGLDLSCNKLIGEIPLQIG--ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL------SYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L------s~n~l~~~~~~~l~~l~~ 690 (740)
|+.|++++|+++ .+|..+. .+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|..+..+++
T Consensus 490 L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~ 567 (636)
T 4eco_A 490 LTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPS 567 (636)
T ss_dssp CCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSS
T ss_pred ccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCC
Confidence 999999999998 7888886 99999999999999997 8889999999999999 567788899999999999
Q ss_pred CceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 691 LAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|+.|++++|++ +.+|..+. ++|+.|++++||+.|
T Consensus 568 L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 568 LTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred CCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence 99999999999 55676544 899999999999987
No 22
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.3e-41 Score=379.00 Aligned_cols=461 Identities=20% Similarity=0.129 Sum_probs=248.6
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
...+++++++|.++ .+|. .+. ++|++|++++|.+++..+.+|+++++|++|++++|++++..+. .+.++++|++|
T Consensus 31 ~~~~~l~ls~~~L~-~ip~-~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 105 (562)
T 3a79_B 31 ELESMVDYSNRNLT-HVPK-DLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFH-VFLFNQDLEYL 105 (562)
T ss_dssp --CCEEECTTSCCC-SCCT-TSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTT-TTTTCTTCCEE
T ss_pred CCCcEEEcCCCCCc-cCCC-CCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHH-HhCCCCCCCEE
Confidence 34466777777666 4554 232 5677777777777666666677777777777777776653233 56667777777
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCC-CChhhcCCCCCCEEEcCCCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGI-FPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~L~~~~ 266 (740)
++++|.++ .++.. .+.+|+.|++++|.+.+. .|..++++++|++|++++|.
T Consensus 106 ~Ls~N~l~-~lp~~---------------------------~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~ 157 (562)
T 3a79_B 106 DVSHNRLQ-NISCC---------------------------PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK 157 (562)
T ss_dssp ECTTSCCC-EECSC---------------------------CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred ECCCCcCC-ccCcc---------------------------ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence 77776654 22210 111333333333333331 24555666666666666665
Q ss_pred CCCCCChhHHhcCCCC--CEEEccCCcc--cccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCccc
Q 045323 267 LTREFPNWLLEKNKKL--KRLSLVNISL--FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFN 342 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L--~~L~L~~~~~--~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~ 342 (740)
+.+.. +..+++| ++|++++|.+ ....+..+..+.. ..-.+++++|.+.
T Consensus 158 l~~~~----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~------------------------~~l~l~l~~n~~~ 209 (562)
T 3a79_B 158 FRQLD----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNT------------------------TVLHLVFHPNSLF 209 (562)
T ss_dssp CCTTT----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCE------------------------EEEEEEECSSSCC
T ss_pred cccCc----hhhhhhceeeEEEeecccccccccCcccccccCc------------------------ceEEEEecCccch
Confidence 54311 1233333 5555555544 3322222222110 0112344444443
Q ss_pred ccCCCCccCcCccccCCccEEEccCCCCC----CcCcccccCCCCCCeeecCCCcceec----CCcCCCCCCCCceEeCC
Q 045323 343 GSIPSSFGNTWPWGCFYLEYLVLSNNSLQ----GQLFSKEFNLTKLKRLNLDGNHFIGD----IPKTLSNCSALQGLYIS 414 (740)
Q Consensus 343 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~ 414 (740)
+..+..... .+++|+.+++++|... ......+..+++|+.+++.++.+.+. .+.. ...++|++|+++
T Consensus 210 ~~~~~~~~~----~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~-~~~~~L~~L~l~ 284 (562)
T 3a79_B 210 SVQVNMSVN----ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQF-FWPRPVEYLNIY 284 (562)
T ss_dssp CCCCEEEES----SEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHH-HTTSSEEEEEEE
T ss_pred hhhhhhccc----ccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHh-hhcccccEEEEe
Confidence 322221111 1225666666666421 01123345667777777766654331 1111 122478888888
Q ss_pred CcccccCCCcCC-----CCCCCCCEEeCCCCcCcCCchhhhc---CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 415 DNNISGNIPTRL-----GNLSFLDAIMMPNNRLEGPIPSAFC---QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 415 ~n~i~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~~~l~---~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
+|.+.+.+|..+ ..++.|+.+++..+.+. .....+. ...+|++|++++|.+.... .
T Consensus 285 ~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~-~p~~~~~~~~~~~~L~~L~l~~n~~~~~~-~-------------- 348 (562)
T 3a79_B 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYSVFAEMNIKMLSISDTPFIHMV-C-------------- 348 (562)
T ss_dssp EEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCS-SCHHHHHHHHHTCCCSEEEEESSCCCCCC-C--------------
T ss_pred ccEeeccccchhhhcccccchheehhhcccceee-cChhhhhhhhccCcceEEEccCCCccccc-C--------------
Confidence 888877677665 55666666666666551 2212222 2256777777777654211 1
Q ss_pred CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCC--Cccccccccc
Q 045323 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQI--PHCLYNISFN 564 (740)
Q Consensus 487 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~~ 564 (740)
...+++|++|++++|.+++..+..+..+++|+.|++++|.+.+.. |..
T Consensus 349 -----------------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~------- 398 (562)
T 3a79_B 349 -----------------------PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM------- 398 (562)
T ss_dssp -----------------------CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT-------
T ss_pred -----------------------ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh-------
Confidence 123455556666666555555555555666666666666554210 111
Q ss_pred cccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh-hhhcCCCC
Q 045323 565 YREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL-QIGELSRI 643 (740)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~l~~l~~L 643 (740)
+..+++|+.|++++|++.+.+|. .+..+++|
T Consensus 399 ------------------------------------------------~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 399 ------------------------------------------------TKNMSSLETLDVSLNSLNSHAYDRTCAWAESI 430 (562)
T ss_dssp ------------------------------------------------TTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred ------------------------------------------------hcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence 12233566666666666553333 35566777
Q ss_pred cEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccC
Q 045323 644 HTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 644 ~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~N 723 (740)
++|+|++|++++..|..+. ++|+.|+|++|+++ .+|+.+..+++|+.|++++|++++.++..++.+++|+.+++++|
T Consensus 431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N 507 (562)
T 3a79_B 431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507 (562)
T ss_dssp CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC
T ss_pred CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC
Confidence 7777777777665555543 56777777777776 55555557777777777777777555544667777777777777
Q ss_pred CCCCCcCC
Q 045323 724 PFLCGQPL 731 (740)
Q Consensus 724 p~~c~~~l 731 (740)
||.|+|++
T Consensus 508 ~~~c~c~~ 515 (562)
T 3a79_B 508 PWDCTCPG 515 (562)
T ss_dssp CBCCCHHH
T ss_pred CcCCCcch
Confidence 77777753
No 23
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.8e-39 Score=370.37 Aligned_cols=423 Identities=17% Similarity=0.208 Sum_probs=340.3
Q ss_pred ccccEEEecCCCCCCCCChhhcCCCCCCEEEc-CCCCCCCCCChh-----------------------------------
Q 045323 231 FQLTSISLFGHGDSGIFPKFLYHQHDLEYVDL-SHLNLTREFPNW----------------------------------- 274 (740)
Q Consensus 231 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L-~~~~~~~~~~~~----------------------------------- 274 (740)
.+++.|+++++.+.+.+|..+++++.|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 47999999999999999999999999999999 777654432210
Q ss_pred -----HH----------hcCCCCCEEEccC--CcccccCCCCCCCCCCCCEEEccCCcccc-----------------cC
Q 045323 275 -----LL----------EKNKKLKRLSLVN--ISLFGPFPLPIHCHKNLRVLDVSNNKLQG-----------------HI 320 (740)
Q Consensus 275 -----~~----------~~~~~L~~L~L~~--~~~~~~~~~~l~~~~~L~~L~l~~~~l~~-----------------~~ 320 (740)
+. .....++.+.+.. |.+.+ +|..+..+++|+.|++++|.+++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 00 0011233333332 55555 78889999999999999999997 38
Q ss_pred chhhh-hcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCC-CCC-cCcccccC-------CCCCCeeecC
Q 045323 321 PIEIG-EVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNS-LQG-QLFSKEFN-------LTKLKRLNLD 390 (740)
Q Consensus 321 ~~~~~-~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~-~~~~~~~~-------l~~L~~L~l~ 390 (740)
|..+. ..+++|+.|++++|.+.+.+|..+..+. +|++|++++|+ +++ .+|..+.. +++|+.|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~-----~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls 556 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLP-----ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCS-----SCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCC-----CCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEee
Confidence 88774 2389999999999999999998888766 89999999998 886 56665544 4599999999
Q ss_pred CCcceecCCc--CCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC-CCEEECCCCcCc
Q 045323 391 GNHFIGDIPK--TLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH-LEILDLSRNNIS 467 (740)
Q Consensus 391 ~n~~~~~~~~--~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~n~~~ 467 (740)
+|.+. .+|. .+..+++|+.|++++|.+. .+| .|..+++|+.|++++|.+. .+|..+.++++ |++|++++|.+.
T Consensus 557 ~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~ 632 (876)
T 4ecn_A 557 YNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK 632 (876)
T ss_dssp SSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred CCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence 99998 7777 7899999999999999999 777 8999999999999999999 78888999999 999999999998
Q ss_pred ccCCCCCC-C--CcccEEEcCCCcccCcCccccCCCcCCCCCCcccC--CCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 468 GSLPSCSS-P--FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN--RLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 468 ~~~~~~~~-~--~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
.+|.... . ++|+.|++++|++.+..+ .++..+. .+++|+.|++++|.+....+..+..+++|+.
T Consensus 633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip----------~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~ 701 (876)
T 4ecn_A 633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGR----------NISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST 701 (876)
T ss_dssp -SCCSCCCTTCSSCEEEEECCSSCTTTTSS----------SCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred -cCchhhhccccCCCCEEECcCCcCCCccc----------cchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence 5555444 3 459999999999875322 1222222 3468999999999999443344568999999
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+. .+|..+.... ......+++|+.|
T Consensus 702 L~Ls~N~L~-~ip~~~~~~~-----------------------------------------------~~~l~nl~~L~~L 733 (876)
T 4ecn_A 702 IILSNNLMT-SIPENSLKPK-----------------------------------------------DGNYKNTYLLTTI 733 (876)
T ss_dssp EECCSCCCS-CCCTTSSSCT-----------------------------------------------TSCCTTGGGCCEE
T ss_pred EECCCCcCC-ccChHHhccc-----------------------------------------------cccccccCCccEE
Confidence 999999998 6665432211 0011234589999
Q ss_pred EcccCcccccChhhhh--cCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCC------CccCccCCcccccCCcCcee
Q 045323 623 DLSCNKLIGEIPLQIG--ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSY------NNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~--~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~------n~l~~~~~~~l~~l~~L~~L 694 (740)
++++|++. .+|..+. .+++|+.|+|++|++++ +|..+..+++|+.|+|++ |++.+.+|..+..+++|+.|
T Consensus 734 ~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L 811 (876)
T 4ecn_A 734 DLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811 (876)
T ss_dssp ECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence 99999998 7888887 89999999999999996 788899999999999977 78888999999999999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
+|++|++ +.+|..+. ++|+.|++++||+..
T Consensus 812 ~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 812 QIGSNDI-RKVDEKLT--PQLYILDIADNPNIS 841 (876)
T ss_dssp ECCSSCC-CBCCSCCC--SSSCEEECCSCTTCE
T ss_pred ECCCCCC-CccCHhhc--CCCCEEECCCCCCCc
Confidence 9999999 66676543 699999999999864
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.7e-38 Score=343.62 Aligned_cols=113 Identities=23% Similarity=0.315 Sum_probs=70.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..|..|..+++|++|+|++|++++..|..|+.+++|++|+|++|++++..|..+..+++|+.|+++
T Consensus 300 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 300 DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 55555555555555555556666666666666666665556666666666666666666665556666666666666666
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+|++++.++..++.+++|++|++++||+.|+|+
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 666666555555666666666666666666665
No 25
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.1e-37 Score=347.36 Aligned_cols=445 Identities=19% Similarity=0.175 Sum_probs=266.4
Q ss_pred CCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEE
Q 045323 108 ASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEEL 187 (740)
Q Consensus 108 ~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L 187 (740)
++|++|++++|.+. .++...|.++++|++|++++|.+++..|.+|+++++|++|++++|+++. +|. . .+++|++|
T Consensus 52 ~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~-~--~l~~L~~L 126 (562)
T 3a79_B 52 PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISC-C--PMASLRHL 126 (562)
T ss_dssp TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECS-C--CCTTCSEE
T ss_pred CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCc-c--ccccCCEE
Confidence 78999999999998 5665589999999999999999998888999999999999999999974 777 3 89999999
Q ss_pred eccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCC--CCCCChhhcCCC-CCCEEEcCC
Q 045323 188 WLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGD--SGIFPKFLYHQH-DLEYVDLSH 264 (740)
Q Consensus 188 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~l~~l~-~L~~L~L~~ 264 (740)
++++|.+.+......+.++++|++|+++...........+... +|+.|++++|.+ .+..+..+..++ ..-.+++++
T Consensus 127 ~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~ 205 (562)
T 3a79_B 127 DLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHL-HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHP 205 (562)
T ss_dssp ECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTS-CEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECS
T ss_pred ECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhc-eeeEEEeecccccccccCcccccccCcceEEEEecC
Confidence 9999998742223567777766666665533222111111111 235666655555 444444444432 111334455
Q ss_pred CCCCCCCChhHHhcCCCCCEEEccCCcc----cccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCc
Q 045323 265 LNLTREFPNWLLEKNKKLKRLSLVNISL----FGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNA 340 (740)
Q Consensus 265 ~~~~~~~~~~~~~~~~~L~~L~L~~~~~----~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~ 340 (740)
|.+.+.++...+..+++|+.+++++|.. .......+..+++|+.++++++.+.+.....+..
T Consensus 206 n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~-------------- 271 (562)
T 3a79_B 206 NSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ-------------- 271 (562)
T ss_dssp SSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH--------------
T ss_pred ccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH--------------
Confidence 5554444433333444455555544420 0000112233344444444443332211111000
Q ss_pred ccccCCCCccCcCccccCCccEEEccCCCCCCcCcccc-----cCCCCCCeeecCCCcceecCC-cCCC---CCCCCceE
Q 045323 341 FNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKE-----FNLTKLKRLNLDGNHFIGDIP-KTLS---NCSALQGL 411 (740)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~~~~~~~-~~l~---~~~~L~~L 411 (740)
.+ ..++|++|++++|.+.+..|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|
T Consensus 272 -------~~------~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L 336 (562)
T 3a79_B 272 -------FF------WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKML 336 (562)
T ss_dssp -------HH------TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEE
T ss_pred -------hh------hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEE
Confidence 00 01145555555555554444433 2333333333333332 111 0000 11357777
Q ss_pred eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccC
Q 045323 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQG 491 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~ 491 (740)
++++|.+.... ....+++|++|++++|.+++..+..+.++++|++|++++|++.+..
T Consensus 337 ~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--------------------- 393 (562)
T 3a79_B 337 SISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF--------------------- 393 (562)
T ss_dssp EEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT---------------------
T ss_pred EccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc---------------------
Confidence 77777665321 1256777888888888877777777788888888888888776211
Q ss_pred cCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCC
Q 045323 492 PLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNH 570 (740)
Q Consensus 492 ~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~ 570 (740)
.+|..+..+++|++|++++|.+.+.+| ..+..+++|+.|++++|.+++.+|..+.
T Consensus 394 -------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~----------- 449 (562)
T 3a79_B 394 -------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP----------- 449 (562)
T ss_dssp -------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC-----------
T ss_pred -------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc-----------
Confidence 123345667778888888887776344 3467778888888888877644332211
Q ss_pred CccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcC
Q 045323 571 DLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH 650 (740)
Q Consensus 571 ~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~ 650 (740)
++|+.|++++|+++ .+|..+..+++|++|+|++
T Consensus 450 ----------------------------------------------~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~ 482 (562)
T 3a79_B 450 ----------------------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVAS 482 (562)
T ss_dssp ----------------------------------------------TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCS
T ss_pred ----------------------------------------------CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCC
Confidence 26777788888776 5666666788888888888
Q ss_pred CcCcccCCccccCCCCCCEEeCCCCccCccC
Q 045323 651 NNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681 (740)
Q Consensus 651 N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 681 (740)
|++++..+..|..+++|+.|++++|++.+..
T Consensus 483 N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c 513 (562)
T 3a79_B 483 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513 (562)
T ss_dssp SCCCCCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred CCCCCCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence 8888444444777788888888888777543
No 26
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.3e-36 Score=327.11 Aligned_cols=365 Identities=17% Similarity=0.154 Sum_probs=240.3
Q ss_pred CCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCccccc-CCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcE
Q 045323 255 HDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP-FPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVV 333 (740)
Q Consensus 255 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~ 333 (740)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+... .+..+..+++|++|++++|.+++..|..+.. +++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~-~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSF-SRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNG-LANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTT-SSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTT-CTTCCE
T ss_pred CccCEEEecCCccCcCChhHh-ccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccC-cccCCE
Confidence 456666666666654334332 4555666666665555422 2344555666666666666655333444433 556666
Q ss_pred EeccCCcccccCCCC--ccCcCccccCCccEEEccCCCCCCcCccc-ccCCCCCCeeecCCCcceecCCcCCCCC--CCC
Q 045323 334 LNVATNAFNGSIPSS--FGNTWPWGCFYLEYLVLSNNSLQGQLFSK-EFNLTKLKRLNLDGNHFIGDIPKTLSNC--SAL 408 (740)
Q Consensus 334 L~l~~n~~~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~l~~~--~~L 408 (740)
|++++|.+++..+.. +..+. +|++|++++|.+.+..+.. +..+++|++|++++|.+.+..+..+..+ .+|
T Consensus 108 L~L~~n~l~~~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFKPLT-----SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHF 182 (455)
T ss_dssp EECTTSCCBTHHHHSSTTTTCT-----TCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEE
T ss_pred EeCCCCCCCccccCcccccCcc-----cCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccc
Confidence 666666555422221 33322 5666666666666554443 5566666666666666665555555444 456
Q ss_pred ceEeCCCcccccCCCcC--------CCCCCCCCEEeCCCCcCcCCchhhhcCC---CCCCEEECCCCcCcccCCCCCCCC
Q 045323 409 QGLYISDNNISGNIPTR--------LGNLSFLDAIMMPNNRLEGPIPSAFCQL---RHLEILDLSRNNISGSLPSCSSPF 477 (740)
Q Consensus 409 ~~L~l~~n~i~~~~~~~--------~~~l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~l~~n~~~~~~~~~~~~~ 477 (740)
+.|++++|.+.+..+.. +..+++|++|++++|.+++..+..+... ++|+.|++++|...+....
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~----- 257 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG----- 257 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTT-----
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccc-----
Confidence 66666666665433322 2244566666666666655555544332 5566666666554322111
Q ss_pred cccEEEcCCCcccCcCccccCCCcCCCCCCcccC--CCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCC
Q 045323 478 NIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN--RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIP 555 (740)
Q Consensus 478 ~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~--~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p 555 (740)
.+.+....+..+. ..++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..|
T Consensus 258 ---------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 316 (455)
T 3v47_A 258 ---------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDD 316 (455)
T ss_dssp ---------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT
T ss_pred ---------------------hhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccCh
Confidence 1111111112222 24789999999999998888889999999999999999986655
Q ss_pred ccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChh
Q 045323 556 HCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPL 635 (740)
Q Consensus 556 ~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~ 635 (740)
..+.+ +++|+.|++++|++.+..|.
T Consensus 317 ~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l~~~~~~ 341 (455)
T 3v47_A 317 NAFWG-------------------------------------------------------LTHLLKLNLSQNFLGSIDSR 341 (455)
T ss_dssp TTTTT-------------------------------------------------------CTTCCEEECCSSCCCEECGG
T ss_pred hHhcC-------------------------------------------------------cccCCEEECCCCccCCcChh
Confidence 54443 34899999999999988899
Q ss_pred hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCC
Q 045323 636 QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 636 ~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
.|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++++..|.
T Consensus 342 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 342 MFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp GGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred HhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCc
Confidence 999999999999999999999999999999999999999999977777888999999999999999988874
No 27
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.6e-36 Score=326.09 Aligned_cols=417 Identities=23% Similarity=0.264 Sum_probs=181.1
Q ss_pred CCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCE
Q 045323 107 MASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEE 186 (740)
Q Consensus 107 l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~ 186 (740)
.++|++|++++|.+ +.+|. .++++++|++|++++|.+.+..|..++++++|+.+++.+|.. .++++
T Consensus 10 ~~~L~~L~l~~n~l-~~iP~-~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~------------~~l~~ 75 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEMPV-EAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD------------RQAHE 75 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH------------HTCSE
T ss_pred cccchhhhcccCch-hhCCh-hHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc------------cCCCE
Confidence 46777777777777 46775 677777777777777777777777777766653333332210 12333
Q ss_pred EeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCC
Q 045323 187 LWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLN 266 (740)
Q Consensus 187 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~ 266 (740)
|++++|.+++ ++. + ..+|+.|++++|.+.+ +|.. .++|++|++++|.
T Consensus 76 L~l~~~~l~~-lp~--------------------------~--~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~ 122 (454)
T 1jl5_A 76 LELNNLGLSS-LPE--------------------------L--PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNN 122 (454)
T ss_dssp EECTTSCCSC-CCS--------------------------C--CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSC
T ss_pred EEecCCcccc-CCC--------------------------C--cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCc
Confidence 4444433321 000 0 0022222222222222 1211 1345555555554
Q ss_pred CCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCC
Q 045323 267 LTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIP 346 (740)
Q Consensus 267 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 346 (740)
+.+ ++. .. ++|++|++++|.++ .+| .+. .+++|++|++++|.+++ +|
T Consensus 123 l~~-l~~----~~------------------------~~L~~L~L~~n~l~-~lp-~~~-~l~~L~~L~l~~N~l~~-lp 169 (454)
T 1jl5_A 123 LKA-LSD----LP------------------------PLLEYLGVSNNQLE-KLP-ELQ-NSSFLKIIDVDNNSLKK-LP 169 (454)
T ss_dssp CSC-CCS----CC------------------------TTCCEEECCSSCCS-SCC-CCT-TCTTCCEEECCSSCCSC-CC
T ss_pred cCc-ccC----CC------------------------CCCCEEECcCCCCC-CCc-ccC-CCCCCCEEECCCCcCcc-cC
Confidence 442 221 01 34555555555554 244 222 24555555555555542 23
Q ss_pred CCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCC
Q 045323 347 SSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRL 426 (740)
Q Consensus 347 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~ 426 (740)
..+ .+|++|++++|.+.+ .+ .+..+++|++|++++|.+.+ +|.. .++|++|++++|.+. .+| .+
T Consensus 170 ~~~--------~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 170 DLP--------PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp CCC--------TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred CCc--------ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 221 146666666666664 23 45666667777777666654 2221 146777777777666 444 36
Q ss_pred CCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCC
Q 045323 427 GNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNI 506 (740)
Q Consensus 427 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~ 506 (740)
..+++|++|++++|.+++ +|. .+++|++|++++|.+.+ ++.. +++|+.|++++|++++.
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~--~~~L~~L~ls~N~l~~l-------------- 292 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL--PQSLTFLDVSENIFSGL-------------- 292 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC--CTTCCEEECCSSCCSEE--------------
T ss_pred CCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc--cCcCCEEECcCCccCcc--------------
Confidence 667777777777776664 222 23567777777777664 2221 35666677666665421
Q ss_pred CcccCCCCCCcEEecccCcccccCCccccCC-CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 507 PDWMNRLPQLRYLILANNGLEGEMPLQLCWL-NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+. -.++|+.|++++|.+++. + .+ ++|+.|++++|.+.+ +|..
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~i-~----~~~~~L~~L~Ls~N~l~~-lp~~---------------------------- 335 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRSL-C----DLPPSLEELNVSNNKLIE-LPAL---------------------------- 335 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSEE-C----CCCTTCCEEECCSSCCSC-CCCC----------------------------
T ss_pred cC---cCCcCCEEECcCCcCCcc-c----CCcCcCCEEECCCCcccc-cccc----------------------------
Confidence 11 014677777777766632 1 22 467777777776653 2221
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcc--cCCccccC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTG--ESPVTFSH 663 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~--~~~~~l~~ 663 (740)
+++|+.|++++|+++ .+|. .+++|++|+|++|++++ .+|..+..
T Consensus 336 ------------------------------~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 336 ------------------------------PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp ------------------------------CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred ------------------------------CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 136677777777776 3444 35677777777777775 34444332
Q ss_pred CCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccC--CCCcccCCCCccccccccCCCCCC
Q 045323 664 MKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK--TPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 664 l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~--~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
| +.|...+.+|.. +++|+.|++++|++++. +| ++++.+.+.+|.+.|.
T Consensus 382 ------L--~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~ 431 (454)
T 1jl5_A 382 ------L--RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDP 431 (454)
T ss_dssp ------E--ECCC------------------------------------------------------
T ss_pred ------h--hhcccccccccc---cCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCc
Confidence 2 234444455542 36788888888888763 33 3456666777766654
No 28
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.9e-36 Score=325.88 Aligned_cols=305 Identities=19% Similarity=0.187 Sum_probs=236.7
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 112 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDIS 112 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECT
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECC
Confidence 46666666666665555566666667777777776666666666666777777777776665545556667777777777
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|.+....+..|..+++|++|++++|.+.+..+. +..+++|+.|++++|++++ ..+..+..+++|+
T Consensus 113 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~l~~l~~L~ 179 (477)
T 2id5_A 113 ENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-------------IPTEALSHLHGLI 179 (477)
T ss_dssp TSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-------------CCHHHHTTCTTCC
T ss_pred CCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-------------cChhHhcccCCCc
Confidence 7776666666667777777777777776655443 3336677777777766542 2335678889999
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
.|++++|.+.+..+..+..+++|+.|++++|+..+.+|.....
T Consensus 180 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~------------------------------------- 222 (477)
T 2id5_A 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLY------------------------------------- 222 (477)
T ss_dssp EEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTT-------------------------------------
T ss_pred EEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccccc-------------------------------------
Confidence 9999999998877778999999999999998876555432211
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
..+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++
T Consensus 223 ------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 223 ------------------GLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp ------------------TCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred ------------------CccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCcc
Confidence 12799999999999866667899999999999999999988888999999999999999999
Q ss_pred CccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 678 NGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 678 ~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++..|..+..+++|+.|++++|++++..+..+..+++|+.|++++|||.|+|.+
T Consensus 285 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~ 338 (477)
T 2id5_A 285 AVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRL 338 (477)
T ss_dssp SEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGG
T ss_pred ceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccch
Confidence 998899999999999999999999999888889999999999999999999975
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.9e-34 Score=308.48 Aligned_cols=400 Identities=24% Similarity=0.308 Sum_probs=224.0
Q ss_pred CCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCcc
Q 045323 131 ELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLK 210 (740)
Q Consensus 131 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~ 210 (740)
+..+|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|. .++.+.+|+.+++..|...
T Consensus 9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~--------------- 71 (454)
T 1jl5_A 9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDR--------------- 71 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHH---------------
T ss_pred ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhcc---------------
Confidence 346777777777777 46676777777777777777776666666 5666666666555554321
Q ss_pred EEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCC
Q 045323 211 FFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNI 290 (740)
Q Consensus 211 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 290 (740)
+++.|++++|.+++ +|. ..++|++|++++|
T Consensus 72 ---------------------~l~~L~l~~~~l~~-------------------------lp~----~~~~L~~L~l~~n 101 (454)
T 1jl5_A 72 ---------------------QAHELELNNLGLSS-------------------------LPE----LPPHLESLVASCN 101 (454)
T ss_dssp ---------------------TCSEEECTTSCCSC-------------------------CCS----CCTTCSEEECCSS
T ss_pred ---------------------CCCEEEecCCcccc-------------------------CCC----CcCCCCEEEccCC
Confidence 34445555544443 222 1234444444444
Q ss_pred cccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCC
Q 045323 291 SLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSL 370 (740)
Q Consensus 291 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l 370 (740)
.+.+ +|.. .++|++|++++|.++ .++.. .++|++|++++|.+++ +| .+..+. +|++|++++|.+
T Consensus 102 ~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~~----~~~L~~L~L~~n~l~~-lp-~~~~l~-----~L~~L~l~~N~l 165 (454)
T 1jl5_A 102 SLTE-LPEL---PQSLKSLLVDNNNLK-ALSDL----PPLLEYLGVSNNQLEK-LP-ELQNSS-----FLKIIDVDNNSL 165 (454)
T ss_dssp CCSS-CCCC---CTTCCEEECCSSCCS-CCCSC----CTTCCEEECCSSCCSS-CC-CCTTCT-----TCCEEECCSSCC
T ss_pred cCCc-cccc---cCCCcEEECCCCccC-cccCC----CCCCCEEECcCCCCCC-Cc-ccCCCC-----CCCEEECCCCcC
Confidence 4433 2221 256777777777776 34321 2588888888888875 55 455544 788888888888
Q ss_pred CCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhh
Q 045323 371 QGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAF 450 (740)
Q Consensus 371 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 450 (740)
++ .+.. .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|.. .++|++|++++|.++ .+| .+
T Consensus 166 ~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~ 233 (454)
T 1jl5_A 166 KK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-EL 233 (454)
T ss_dssp SC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CC
T ss_pred cc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-cc
Confidence 75 3332 2578888888888775 44 47788888888888888774 3332 257888888888877 445 37
Q ss_pred cCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccC
Q 045323 451 CQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEM 530 (740)
Q Consensus 451 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~ 530 (740)
..+++|++|++++|++.+ ++. .+++|+.|++++|++++ +|.. .++|++|++++|.+++.
T Consensus 234 ~~l~~L~~L~l~~N~l~~-l~~--~~~~L~~L~l~~N~l~~--------------l~~~---~~~L~~L~ls~N~l~~l- 292 (454)
T 1jl5_A 234 QNLPFLTTIYADNNLLKT-LPD--LPPSLEALNVRDNYLTD--------------LPEL---PQSLTFLDVSENIFSGL- 292 (454)
T ss_dssp TTCTTCCEEECCSSCCSS-CCS--CCTTCCEEECCSSCCSC--------------CCCC---CTTCCEEECCSSCCSEE-
T ss_pred CCCCCCCEEECCCCcCCc-ccc--cccccCEEECCCCcccc--------------cCcc---cCcCCEEECcCCccCcc-
Confidence 788888888888888774 332 24678888888777652 2322 36788888888877742
Q ss_pred CccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccce
Q 045323 531 PLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYT 610 (740)
Q Consensus 531 ~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~ 610 (740)
+. ..++|+.|++++|.+.+ ++.
T Consensus 293 ~~---~~~~L~~L~l~~N~l~~-i~~------------------------------------------------------ 314 (454)
T 1jl5_A 293 SE---LPPNLYYLNASSNEIRS-LCD------------------------------------------------------ 314 (454)
T ss_dssp SC---CCTTCCEEECCSSCCSE-ECC------------------------------------------------------
T ss_pred cC---cCCcCCEEECcCCcCCc-ccC------------------------------------------------------
Confidence 21 12577888888877652 110
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc--cCCcccccC
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG--KIPPRLIEL 688 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~~~~l~~l 688 (740)
..++|+.|++++|++.+ +|.. +++|++|+|++|++++ +|. .+++|++|++++|++++ .+|..+..
T Consensus 315 ----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~- 381 (454)
T 1jl5_A 315 ----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED- 381 (454)
T ss_dssp ----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE-
T ss_pred ----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh-
Confidence 11367888888888874 5543 5788888888888883 444 36788888888888886 45554432
Q ss_pred CcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 689 NALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 689 ~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
++.|.+.+.+|. .+++|++|++++|++..
T Consensus 382 -------L~~n~~~~~i~~---~~~~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 382 -------LRMNSHLAEVPE---LPQNLKQLHVETNPLRE 410 (454)
T ss_dssp -------EECCC---------------------------
T ss_pred -------hhhccccccccc---ccCcCCEEECCCCcCCc
Confidence 345666666665 35889999999999875
No 30
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=7.3e-34 Score=310.28 Aligned_cols=247 Identities=19% Similarity=0.224 Sum_probs=145.1
Q ss_pred CEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccE
Q 045323 283 KRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEY 362 (740)
Q Consensus 283 ~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~ 362 (740)
+.++.++..+.. +|..+ .++++.|++++|.+++..+..+. .+++|++|++++|.+.+..|..|..+. +|++
T Consensus 14 ~~v~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~ 84 (477)
T 2id5_A 14 RAVLCHRKRFVA-VPEGI--PTETRLLDLGKNRIKTLNQDEFA-SFPHLEELELNENIVSAVEPGAFNNLF-----NLRT 84 (477)
T ss_dssp TEEECCSCCCSS-CCSCC--CTTCSEEECCSSCCCEECTTTTT-TCTTCCEEECTTSCCCEECTTTTTTCT-----TCCE
T ss_pred CEEEeCCCCcCc-CCCCC--CCCCcEEECCCCccceECHhHcc-CCCCCCEEECCCCccCEeChhhhhCCc-----cCCE
Confidence 455555554432 33322 24677777777777643333333 367777777777777766666666544 6777
Q ss_pred EEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcC
Q 045323 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRL 442 (740)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~ 442 (740)
|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+
T Consensus 85 L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 85 LGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp EECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred EECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 77777777765555566677777777777777766666677777777777777777666666677777777777777777
Q ss_pred cCCchhhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEec
Q 045323 443 EGPIPSAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLIL 521 (740)
Q Consensus 443 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l 521 (740)
+...+..+.++++|+.|++++|.+.+..+.. ..+++|+.|++++|.+.+ .++.......+|++|++
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~-------------~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLD-------------TMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCC-------------EECTTTTTTCCCSEEEE
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcccc-------------ccCcccccCccccEEEC
Confidence 7666666777777777777777666443322 224455555555443321 11222222234555555
Q ss_pred ccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 522 ANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 522 s~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
++|.++...+..+..+++|+.|++++|++.
T Consensus 232 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 261 (477)
T 2id5_A 232 THCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261 (477)
T ss_dssp ESSCCCSCCHHHHTTCTTCCEEECCSSCCC
T ss_pred cCCcccccCHHHhcCccccCeeECCCCcCC
Confidence 555444322233444445555555544443
No 31
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7.4e-33 Score=300.74 Aligned_cols=348 Identities=22% Similarity=0.326 Sum_probs=277.3
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCc
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLV 332 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~ 332 (740)
.+++++.|+++++.+. .+|. +..+++|++|++++|.+....+ +..+++|++|++++|.++ .++. +. .+++|+
T Consensus 44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~~-~l~~L~ 115 (466)
T 1o6v_A 44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP-LA-NLTNLT 115 (466)
T ss_dssp HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG-GT-TCTTCC
T ss_pred HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh-hc-CCCCCC
Confidence 3568999999999887 4665 4688999999999998876544 888999999999999998 4444 33 489999
Q ss_pred EEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEe
Q 045323 333 VLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLY 412 (740)
Q Consensus 333 ~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 412 (740)
+|++++|.+.+..+ +.. +++|++|++++|.+.+. ..+..+++|+.|+++ +.+.+.. .+..+++|++|+
T Consensus 116 ~L~L~~n~l~~~~~--~~~-----l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~ 183 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKN-----LTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLD 183 (466)
T ss_dssp EEECCSSCCCCCGG--GTT-----CTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEE
T ss_pred EEECCCCCCCCChH--HcC-----CCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEE
Confidence 99999998875432 444 34899999999988863 247788999999996 4443332 377889999999
Q ss_pred CCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCc
Q 045323 413 ISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGP 492 (740)
Q Consensus 413 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~ 492 (740)
+++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ ++.+..+++|+.|++++|.+++.
T Consensus 184 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 184 ISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-IGTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCCC
T ss_pred CcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-chhhhcCCCCCEEECCCCccccc
Confidence 999988753 457888999999999999886655 6778999999999998874 45555688999999999887632
Q ss_pred CccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCc
Q 045323 493 LLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDL 572 (740)
Q Consensus 493 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~ 572 (740)
+. +..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..|
T Consensus 259 --------------~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----------------- 304 (466)
T 1o6v_A 259 --------------AP-LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----------------- 304 (466)
T ss_dssp --------------GG-GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG-----------------
T ss_pred --------------hh-hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh-----------------
Confidence 22 6778999999999999885443 7788999999999998764222
Q ss_pred cCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCc
Q 045323 573 FDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN 652 (740)
Q Consensus 573 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~ 652 (740)
+..+++|+.|++++|++.+..| +..+++|++|++++|+
T Consensus 305 ----------------------------------------~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~ 342 (466)
T 1o6v_A 305 ----------------------------------------ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNK 342 (466)
T ss_dssp ----------------------------------------GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSC
T ss_pred ----------------------------------------hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCc
Confidence 2344589999999999986655 7889999999999999
Q ss_pred CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCC
Q 045323 653 LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 653 l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
+++. ..+..+++|+.|++++|++++..| +..+++|+.|++++|++++.+
T Consensus 343 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 343 VSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECCC
T ss_pred cCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCCc
Confidence 9865 467889999999999999997666 788999999999999998753
No 32
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.9e-32 Score=297.50 Aligned_cols=345 Identities=26% Similarity=0.334 Sum_probs=285.6
Q ss_pred CccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEE
Q 045323 230 KFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVL 309 (740)
Q Consensus 230 ~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L 309 (740)
..+++.|++.++.+... + .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+....+ +..+++|++|
T Consensus 45 l~~l~~L~l~~~~i~~l-~-~~~~l~~L~~L~Ls~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L 117 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKSI-D-GVEYLNNLTQINFSNNQLTD-ITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGL 117 (466)
T ss_dssp HHTCCEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEE
T ss_pred hccccEEecCCCCCccC-c-chhhhcCCCEEECCCCccCC-chh--hhccccCCEEECCCCccccChh--hcCCCCCCEE
Confidence 34899999999988763 4 47889999999999999985 444 4789999999999999876554 8899999999
Q ss_pred EccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeec
Q 045323 310 DVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNL 389 (740)
Q Consensus 310 ~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 389 (740)
++++|.++ .++. + ..+++|++|++++|.+.+. + .+.. +++|++|+++ +.+.+.. .+..+++|+.|++
T Consensus 118 ~L~~n~l~-~~~~-~-~~l~~L~~L~l~~n~l~~~-~-~~~~-----l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l 184 (466)
T 1o6v_A 118 TLFNNQIT-DIDP-L-KNLTNLNRLELSSNTISDI-S-ALSG-----LTSLQQLSFG-NQVTDLK--PLANLTTLERLDI 184 (466)
T ss_dssp ECCSSCCC-CCGG-G-TTCTTCSEEEEEEEEECCC-G-GGTT-----CTTCSEEEEE-ESCCCCG--GGTTCTTCCEEEC
T ss_pred ECCCCCCC-CChH-H-cCCCCCCEEECCCCccCCC-h-hhcc-----CCcccEeecC-CcccCch--hhccCCCCCEEEC
Confidence 99999998 4554 3 4489999999999998753 2 3444 3489999997 4454332 3788999999999
Q ss_pred CCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc
Q 045323 390 DGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS 469 (740)
Q Consensus 390 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~ 469 (740)
++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 185 ~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~ 258 (466)
T 1o6v_A 185 SSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNL 258 (466)
T ss_dssp CSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCC
T ss_pred cCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccc
Confidence 99998754 347888999999999999986544 77899999999999999854 4688999999999999999865
Q ss_pred CCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 470 LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 470 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
.+ +..+++|+.|++++|.+++ ++. +..+++|+.|++++|.+.+..+ +..+++|+.|++++|+
T Consensus 259 ~~-~~~l~~L~~L~l~~n~l~~--------------~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~ 320 (466)
T 1o6v_A 259 AP-LSGLTKLTELKLGANQISN--------------ISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNN 320 (466)
T ss_dssp GG-GTTCTTCSEEECCSSCCCC--------------CGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSC
T ss_pred hh-hhcCCCCCEEECCCCccCc--------------ccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCc
Confidence 44 6679999999999998863 223 7789999999999999986544 7889999999999999
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
+.+..| + ..+++|+.|++++|++
T Consensus 321 l~~~~~--~-------------------------------------------------------~~l~~L~~L~l~~n~l 343 (466)
T 1o6v_A 321 ISDISP--V-------------------------------------------------------SSLTKLQRLFFYNNKV 343 (466)
T ss_dssp CSCCGG--G-------------------------------------------------------GGCTTCCEEECCSSCC
T ss_pred CCCchh--h-------------------------------------------------------ccCccCCEeECCCCcc
Confidence 875433 1 2345899999999999
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
.+. ..+..+++|++|++++|++++..| +..+++|+.|++++|++++
T Consensus 344 ~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 344 SDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 854 468999999999999999998777 7899999999999999995
No 33
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=2.3e-32 Score=294.01 Aligned_cols=317 Identities=22% Similarity=0.219 Sum_probs=187.5
Q ss_pred hhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEEccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCC
Q 045323 102 QMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVNIDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNL 181 (740)
Q Consensus 102 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l 181 (740)
..++.+++|++|++++|.+. .+| .+..+++|++|++++|.+++. + ++.+++|++|++++|++++ ++ +..+
T Consensus 36 ~~~~~l~~L~~L~Ls~n~l~-~~~--~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l 105 (457)
T 3bz5_A 36 ISEEQLATLTSLDCHNSSIT-DMT--GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPL 105 (457)
T ss_dssp EEHHHHTTCCEEECCSSCCC-CCT--TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTC
T ss_pred cChhHcCCCCEEEccCCCcc-cCh--hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCC
Confidence 34566788888888888877 454 578888888888888888764 3 7788888888888888766 32 6778
Q ss_pred CCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEE
Q 045323 182 TYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVD 261 (740)
Q Consensus 182 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 261 (740)
++|++|++++|.+++ ++ ++.+++|++|+
T Consensus 106 ~~L~~L~L~~N~l~~-l~---------------------------------------------------~~~l~~L~~L~ 133 (457)
T 3bz5_A 106 TKLTYLNCDTNKLTK-LD---------------------------------------------------VSQNPLLTYLN 133 (457)
T ss_dssp TTCCEEECCSSCCSC-CC---------------------------------------------------CTTCTTCCEEE
T ss_pred CcCCEEECCCCcCCe-ec---------------------------------------------------CCCCCcCCEEE
Confidence 888888888877652 11 23334455555
Q ss_pred cCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcc
Q 045323 262 LSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAF 341 (740)
Q Consensus 262 L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~ 341 (740)
+++|++.+ ++ +..+++|++|++++|...+.. .+..+++|++|++++|.++ .+| + ..+++|+.|++++|.+
T Consensus 134 l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~-~l~--l-~~l~~L~~L~l~~N~l 203 (457)
T 3bz5_A 134 CARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT-ELD--V-SQNKLLNRLNCDTNNI 203 (457)
T ss_dssp CTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC-CCC--C-TTCTTCCEEECCSSCC
T ss_pred CCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc-eec--c-ccCCCCCEEECcCCcC
Confidence 55554443 22 234455555555555332222 2445556666666666655 233 2 2245666666666655
Q ss_pred cccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC
Q 045323 342 NGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN 421 (740)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~ 421 (740)
++. .+.. +++|++|++++|.+++ +| +..+++|+.|++++|++.+.. +..+++|+.|+++++
T Consensus 204 ~~~---~l~~-----l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n----- 264 (457)
T 3bz5_A 204 TKL---DLNQ-----NIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT----- 264 (457)
T ss_dssp SCC---CCTT-----CTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC-----
T ss_pred Cee---cccc-----CCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC-----
Confidence 532 1222 2256666666666665 22 555666666666666665432 234455666665543
Q ss_pred CCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCc
Q 045323 422 IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNR 501 (740)
Q Consensus 422 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~ 501 (740)
+|+.|++++|.+.+..| +..+++|+.|++++|...+.++. ...+|+.++
T Consensus 265 ---------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~--~~~~L~~L~------------------ 313 (457)
T 3bz5_A 265 ---------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC--QAAGITELD------------------ 313 (457)
T ss_dssp ---------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC--TTCCCSCCC------------------
T ss_pred ---------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc--CCCcceEec------------------
Confidence 23445555565544444 34566677777766665444332 122233222
Q ss_pred CCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 502 LNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 502 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
+..+++|++|++++|++++. + +..+++|+.|++++|+++
T Consensus 314 --------l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~ 352 (457)
T 3bz5_A 314 --------LSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQ 352 (457)
T ss_dssp --------CTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCC
T ss_pred --------hhhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCC
Confidence 33446778888888888763 2 677788888888888775
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=6.9e-33 Score=294.05 Aligned_cols=335 Identities=19% Similarity=0.215 Sum_probs=216.5
Q ss_pred CCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCC
Q 045323 303 HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382 (740)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 382 (740)
+++++.|+++++.++ .+|..++..+++|++|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+..++
T Consensus 44 l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCC-----CcCEEECCCCCCCcCCHHHhcCCC
Confidence 578889999999887 77877766688999999999888866666666654 788888888888877777778888
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++... +..+++|+.|+++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~ 194 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 194 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECC
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecc
Confidence 8888888888887555555677888888888888888766777888888888888888877542 4556778888888
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+. ..+++|+.|++++|.++.. +. ...++|+.|++++|.+++. ..+..+++|+.
T Consensus 195 ~n~l~~~----~~~~~L~~L~l~~n~l~~~--------------~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~ 252 (390)
T 3o6n_A 195 YNLLSTL----AIPIAVEELDASHNSINVV--------------RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVE 252 (390)
T ss_dssp SSCCSEE----ECCSSCSEEECCSSCCCEE--------------EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred ccccccc----CCCCcceEEECCCCeeeec--------------cc--cccccccEEECCCCCCccc--HHHcCCCCccE
Confidence 8776532 1234566666666665421 11 1135566666666666532 34555666666
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+.. +++|+.|
T Consensus 253 L~Ls~n~l~~~~~~~~~~-------------------------------------------------------l~~L~~L 277 (390)
T 3o6n_A 253 VDLSYNELEKIMYHPFVK-------------------------------------------------------MQRLERL 277 (390)
T ss_dssp EECCSSCCCEEESGGGTT-------------------------------------------------------CSSCCEE
T ss_pred EECCCCcCCCcChhHccc-------------------------------------------------------cccCCEE
Confidence 666666655433333222 2356666
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|++.+ +|..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|+++.. + +..+++|+.|++++|++.
T Consensus 278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 666666652 3444455566666666666665 3444455556666666666666533 2 444556666666666665
Q ss_pred cCCCCcccCCCCccccccccCCCCCCcC
Q 045323 703 GKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 703 ~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
..... ..+..+....+.+++..|.++
T Consensus 353 ~~~~~--~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 353 CNSLR--ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp HHHHH--HHTTTCCTTTBCCCCSCCCTT
T ss_pred chhHH--HHHHHHHhhcccccCceeccc
Confidence 43221 233444555555666666554
No 35
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.3e-32 Score=291.86 Aligned_cols=313 Identities=19% Similarity=0.174 Sum_probs=256.6
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++++.+++.++.+....+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~-----~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 118 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCceEEEecCCchhhCChhHhcccc-----cCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCC
Confidence 57899999999988754433345444 7999999999998777778889999999999999998888888889999
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+....+..|..+++|++|++++|.++...+..+.++++|++|++++|.+++. ....+++|+.+++++|
T Consensus 119 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 196 (390)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeecccc
Confidence 99999999999865555678899999999999999888888899999999999999998754 2345788999999988
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
.+++ +...++|++|++++|.+... +. ...++|+.|++++|.+.+. ..
T Consensus 197 ~l~~------------------~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~---------- 243 (390)
T 3o6n_A 197 LLST------------------LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AW---------- 243 (390)
T ss_dssp CCSE------------------EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GG----------
T ss_pred cccc------------------cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HH----------
Confidence 7652 22346799999999998854 32 2357899999999987632 11
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
+..+++|+.|++++|++.+..|..|..+++|++|+
T Consensus 244 ---------------------------------------------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 278 (390)
T 3o6n_A 244 ---------------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 278 (390)
T ss_dssp ---------------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ---------------------------------------------HcCCCCccEEECCCCcCCCcChhHccccccCCEEE
Confidence 23445899999999999988888999999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++|++++ +|..+..+++|++|++++|+++ .+|+.+..+++|+.|++++|+++... +..+++|++|++++|||.|
T Consensus 279 L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~ 353 (390)
T 3o6n_A 279 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 353 (390)
T ss_dssp CCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccc
Confidence 99999985 4556678899999999999998 67777888999999999999998663 5678899999999999999
Q ss_pred CcC
Q 045323 728 GQP 730 (740)
Q Consensus 728 ~~~ 730 (740)
+|.
T Consensus 354 ~~~ 356 (390)
T 3o6n_A 354 NSL 356 (390)
T ss_dssp HHH
T ss_pred hhH
Confidence 874
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=9.4e-33 Score=282.60 Aligned_cols=284 Identities=25% Similarity=0.355 Sum_probs=176.7
Q ss_pred CCCcHHHHHHHHHHhhc---------CC-CCCCcc--ccceEecCCC--CceEEEECCCCCCCCCCCccccccccccccc
Q 045323 6 EGCLEQEGYALLKLKHD---------FF-NNHCCQ--WACVECNTTT--GKVISLDLDGTRKLGDGEGYLNASLFTSFQQ 71 (740)
Q Consensus 6 ~~~~~~~~~~~~~~~~~---------~~-~~~~c~--~~~~~c~~~~--~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~ 71 (740)
+.|.+.|..|+++||++ |. ..+||. |.||.|...+ ++|+.++++++.+
T Consensus 1 ~~c~~~~~~aL~~~k~~~~~~~~l~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l------------------ 62 (313)
T 1ogq_A 1 ELCNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL------------------ 62 (313)
T ss_dssp CCSCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCC------------------
T ss_pred CCCCHHHHHHHHHHHHhcCCcccccCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCc------------------
Confidence 46999999999999987 76 678998 9999998654 7899999988766
Q ss_pred cceeeCCCCCCCCCcEEeCCCCCCcCc--ccchhcccCCCCCEEECCC-CCCCCccChhhhcCCCCCCEEEccCCccccc
Q 045323 72 LELLDLSILNFKNLEYFNMDFCTAFSN--SFLQMSELMASLKYLSLSN-SYLNGTILDQGLCELVYLQEVNIDRNNLSGS 148 (740)
Q Consensus 72 L~~Ldls~~~l~~L~~L~l~~~~~~~~--~~~~~l~~l~~L~~L~Ls~-n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 148 (740)
.+ .+|..+..+++|++|++++ |.+.+.+|. .|.++++|++|++++|.+++.
T Consensus 63 -------------------------~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~l~~~ 116 (313)
T 1ogq_A 63 -------------------------PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP-AIAKLTQLHYLYITHTNVSGA 116 (313)
T ss_dssp -------------------------SSCEECCGGGGGCTTCSEEEEEEETTEESCCCG-GGGGCTTCSEEEEEEECCEEE
T ss_pred -------------------------cCCcccChhHhCCCCCCeeeCCCCCcccccCCh-hHhcCCCCCEEECcCCeeCCc
Confidence 22 3445566677777777773 666655654 677777777777777777766
Q ss_pred ccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccccccccCCCC
Q 045323 149 LPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEIETSHSSLT 228 (740)
Q Consensus 149 ~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 228 (740)
.|..|.++++|++|++++|.+++.+|. .+..+++|++|++++|.+.+.
T Consensus 117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~------------------------------- 164 (313)
T 1ogq_A 117 IPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGA------------------------------- 164 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEE-------------------------------
T ss_pred CCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCc-------------------------------
Confidence 777777777777777777777665555 566677777777777665422
Q ss_pred CCccccEEEecCCCCCCCCChhhcCCC-CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCC
Q 045323 229 PKFQLTSISLFGHGDSGIFPKFLYHQH-DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLR 307 (740)
Q Consensus 229 ~~~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~ 307 (740)
+|..+..++ +|++|++++|.+.+.+|..+ ..++ |++|++++|.+....+..+..+++|+
T Consensus 165 ------------------~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~ 224 (313)
T 1ogq_A 165 ------------------IPDSYGSFSKLFTSMTISRNRLTGKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQ 224 (313)
T ss_dssp ------------------CCGGGGCCCTTCCEEECCSSEEEEECCGGG-GGCC-CSEEECCSSEEEECCGGGCCTTSCCS
T ss_pred ------------------CCHHHhhhhhcCcEEECcCCeeeccCChHH-hCCc-ccEEECcCCcccCcCCHHHhcCCCCC
Confidence 233344444 56666666666555555543 3333 55555555555544455555555666
Q ss_pred EEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCee
Q 045323 308 VLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRL 387 (740)
Q Consensus 308 ~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 387 (740)
.|++++|.+++..|. + ..++ +|++|++++|.+++..|..+..+++|++|
T Consensus 225 ~L~L~~N~l~~~~~~-~-~~l~-----------------------------~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L 273 (313)
T 1ogq_A 225 KIHLAKNSLAFDLGK-V-GLSK-----------------------------NLNGLDLRNNRIYGTLPQGLTQLKFLHSL 273 (313)
T ss_dssp EEECCSSEECCBGGG-C-CCCT-----------------------------TCCEEECCSSCCEECCCGGGGGCTTCCEE
T ss_pred EEECCCCceeeecCc-c-cccC-----------------------------CCCEEECcCCcccCcCChHHhcCcCCCEE
Confidence 666666655433222 1 1133 44555555555544444455555555555
Q ss_pred ecCCCcceecCCcCCCCCCCCceEeCCCcc
Q 045323 388 NLDGNHFIGDIPKTLSNCSALQGLYISDNN 417 (740)
Q Consensus 388 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~ 417 (740)
++++|++++.+|.. ..+++|+.+++++|+
T Consensus 274 ~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 274 NVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 55555555555543 445555555555554
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.6e-32 Score=305.49 Aligned_cols=334 Identities=19% Similarity=0.212 Sum_probs=203.9
Q ss_pred CCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCC
Q 045323 303 HKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLT 382 (740)
Q Consensus 303 ~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~ 382 (740)
+.+++.++++++.+. .+|..++..+++|+.|++++|.+.+..+..+..+. +|++|++++|.+.+..+..+..++
T Consensus 50 l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 50 LNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH-----TIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCT-----TCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCC-----CCCEEECCCCcCCCCCHHHHcCCC
Confidence 467888889888887 67777666688888888888888876666776654 788888888888877777777888
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|+.|++++|.+++.. +..+++|+.|+++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~ 200 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVS 200 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcc
Confidence 8888888888877665556677788888888888887777777778888888888888777542 4456777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+. ..+++|+.|++++|.++.. +.. ..++|+.|++++|.+++ +..+..+++|+.
T Consensus 201 ~n~l~~l----~~~~~L~~L~ls~n~l~~~--------------~~~--~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~ 258 (597)
T 3oja_B 201 YNLLSTL----AIPIAVEELDASHNSINVV--------------RGP--VNVELTILKLQHNNLTD--TAWLLNYPGLVE 258 (597)
T ss_dssp SSCCSEE----ECCTTCSEEECCSSCCCEE--------------ECS--CCSCCCEEECCSSCCCC--CGGGGGCTTCSE
T ss_pred cCccccc----cCCchhheeeccCCccccc--------------ccc--cCCCCCEEECCCCCCCC--ChhhccCCCCCE
Confidence 7766532 1234566666666655321 111 12455556666655553 234555555555
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+.. +++|+.|
T Consensus 259 L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~~L 283 (597)
T 3oja_B 259 VDLSYNELEKIMYHPFVK-------------------------------------------------------MQRLERL 283 (597)
T ss_dssp EECCSSCCCEEESGGGTT-------------------------------------------------------CSSCCEE
T ss_pred EECCCCccCCCCHHHhcC-------------------------------------------------------ccCCCEE
Confidence 555555555443333222 2255555
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|.+.+ +|..+..+++|+.|+|++|.++ .+|..+..+++|+.|+|++|++++. | +..+++|+.|++++|++.
T Consensus 284 ~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 284 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp ECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred ECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCC
Confidence 555555543 3444444555555555555555 3444445555555555555555532 1 334445555555555554
Q ss_pred cCCCCcccCCCCccccccccCCCCCCc
Q 045323 703 GKTPDRVAQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 703 ~~~~~~~~~~~~l~~l~l~~Np~~c~~ 729 (740)
+.... ..+..+....+.+++..|..
T Consensus 359 ~~~~~--~~~~~~~~~~~~~~~~~C~~ 383 (597)
T 3oja_B 359 CNSLR--ALFRNVARPAVDDADQHCKI 383 (597)
T ss_dssp HHHHH--HHTTTCCTTTBCCCCCCCCT
T ss_pred ChhHH--HHHHHHhhhccccccccCCc
Confidence 43221 22333444444555555543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=4.5e-32 Score=291.70 Aligned_cols=360 Identities=18% Similarity=0.158 Sum_probs=218.8
Q ss_pred ChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhc
Q 045323 248 PKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEV 327 (740)
Q Consensus 248 ~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~ 327 (740)
+..++.+++|++|++++|.+.+ +|. +..+++|++|++++|.+... .+..+++|++|++++|.+++ ++ +. .
T Consensus 35 ~~~~~~l~~L~~L~Ls~n~l~~-~~~--l~~l~~L~~L~Ls~n~l~~~---~~~~l~~L~~L~Ls~N~l~~-~~--~~-~ 104 (457)
T 3bz5_A 35 TISEEQLATLTSLDCHNSSITD-MTG--IEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTN-LD--VT-P 104 (457)
T ss_dssp EEEHHHHTTCCEEECCSSCCCC-CTT--GGGCTTCSEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CT-T
T ss_pred ccChhHcCCCCEEEccCCCccc-Chh--hcccCCCCEEEccCCcCCeE---ccccCCCCCEEECcCCCCce-ee--cC-C
Confidence 3445556666666666666653 342 34566666666666665442 25566666666666666653 33 22 2
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++|++|++++|.+++. + +..+ ++|++|++++|.+++. .+..+++|++|++++|+..+.+ .+..+++
T Consensus 105 l~~L~~L~L~~N~l~~l-~--~~~l-----~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~ 171 (457)
T 3bz5_A 105 LTKLTYLNCDTNKLTKL-D--VSQN-----PLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQ 171 (457)
T ss_dssp CTTCCEEECCSSCCSCC-C--CTTC-----TTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTT
T ss_pred CCcCCEEECCCCcCCee-c--CCCC-----CcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCc
Confidence 56666666666666542 2 3332 2566666666666652 2455666666666666443333 2455666
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+++ ++ +..+++|+.|++++|.+++. .+..+++|++|++++|++.+ +| +..+++|+.|++++|
T Consensus 172 L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L~~L~l~~N 243 (457)
T 3bz5_A 172 LTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID-VTPLTQLTYFDCSVN 243 (457)
T ss_dssp CCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC-CTTCTTCSEEECCSS
T ss_pred CCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC-ccccCCCCEEEeeCC
Confidence 6666666666664 22 55666666666666666643 25566666666666666664 33 444666666666666
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
++++.....+. .+....-...+|+.|++++|.+.+..| +..+++|+.|++++|+..+.+|.....+.
T Consensus 244 ~l~~~~~~~l~------~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~----- 310 (457)
T 3bz5_A 244 PLTELDVSTLS------KLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGIT----- 310 (457)
T ss_dssp CCSCCCCTTCT------TCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCS-----
T ss_pred cCCCcCHHHCC------CCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcce-----
Confidence 65532110000 000000011245556666666554444 45678888888888877665553222211
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
. ..+..+++|+.|++++|++++. + +..+++|+.|+
T Consensus 311 --------------------~----------------------L~l~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~ 345 (457)
T 3bz5_A 311 --------------------E----------------------LDLSQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLS 345 (457)
T ss_dssp --------------------C----------------------CCCTTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEE
T ss_pred --------------------E----------------------echhhcccCCEEECCCCccccc-c--cccCCcCcEEE
Confidence 1 1133456899999999999874 3 88999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcc
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRV 709 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~ 709 (740)
+++|++++ ++.|+.|++++|.+.+. ..+..|..+++++|+++|.+|..+
T Consensus 346 l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 346 CVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp CCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred CCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 99999985 35677888999999865 355678899999999999988653
No 39
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.1e-33 Score=283.08 Aligned_cols=259 Identities=31% Similarity=0.542 Sum_probs=189.1
Q ss_pred CCCeeecCCCccee--cCCcCCCCCCCCceEeCCC-cccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEE
Q 045323 383 KLKRLNLDGNHFIG--DIPKTLSNCSALQGLYISD-NNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEIL 459 (740)
Q Consensus 383 ~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L 459 (740)
+++.|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 34444444444443 3444444444444444442 44444444444444444444444444444444444444455555
Q ss_pred ECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCC-
Q 045323 460 DLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLN- 538 (740)
Q Consensus 460 ~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~- 538 (740)
++++|.+. +.+|..+..+++|++|++++|.+++..|..+..++
T Consensus 131 ~Ls~N~l~------------------------------------~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 131 DFSYNALS------------------------------------GTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp ECCSSEEE------------------------------------SCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred eCCCCccC------------------------------------CcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 44444433 24456677788888888888888877888888887
Q ss_pred CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCC
Q 045323 539 KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHS 618 (740)
Q Consensus 539 ~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (740)
+|+.|++++|.+.+.+|..+.. + .
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~-------------------------------------------------------l-~ 198 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFAN-------------------------------------------------------L-N 198 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGG-------------------------------------------------------C-C
T ss_pred cCcEEECcCCeeeccCChHHhC-------------------------------------------------------C-c
Confidence 8899999999887666654332 2 2
Q ss_pred ccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccC
Q 045323 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAF 698 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 698 (740)
|+.|++++|++.+..|..|..+++|++|+|++|++++..|. +..+++|++|++++|++++.+|..+..+++|+.|++++
T Consensus 199 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 88899999999988999999999999999999999976666 78899999999999999999999999999999999999
Q ss_pred cccccCCCCcccCCCCccccccccCCCCCCcCCCCCCC
Q 045323 699 NNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSCN 736 (740)
Q Consensus 699 N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~~ 736 (740)
|++++.+|.. +.+++|+.+++++||+.|+.|+. +|+
T Consensus 278 N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~p~~-~C~ 313 (313)
T 1ogq_A 278 NNLCGEIPQG-GNLQRFDVSAYANNKCLCGSPLP-ACT 313 (313)
T ss_dssp SEEEEECCCS-TTGGGSCGGGTCSSSEEESTTSS-CCC
T ss_pred CcccccCCCC-ccccccChHHhcCCCCccCCCCC-CCC
Confidence 9999999996 88999999999999999998876 574
No 40
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.98 E-value=2.3e-31 Score=297.88 Aligned_cols=313 Identities=19% Similarity=0.182 Sum_probs=250.7
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+++++.+++.+|.+....+..+..+. +|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~-----~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFR-----QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCC-----CCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCC-----CCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 56888999998888754444455443 7999999999988777778888899999999999988887878888899
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n 487 (740)
|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+. ....+++|+.|++++|
T Consensus 125 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYN 202 (597)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC--CGGGCTTCSEEECCSS
T ss_pred CCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc--ChhhhhhhhhhhcccC
Confidence 99999999998866666678899999999999999888888888899999999999988754 2344778899999888
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccccc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRE 567 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~ 567 (740)
.+++ +...++|+.|++++|.+....+. + .++|+.|++++|.+.+. ..
T Consensus 203 ~l~~------------------l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~---------- 249 (597)
T 3oja_B 203 LLST------------------LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AW---------- 249 (597)
T ss_dssp CCSE------------------EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GG----------
T ss_pred cccc------------------ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hh----------
Confidence 7652 23346789999999988744322 2 36899999999987631 11
Q ss_pred CCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEE
Q 045323 568 DNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLN 647 (740)
Q Consensus 568 ~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~ 647 (740)
+..+++|+.|++++|.+.+..|..|..+++|+.|+
T Consensus 250 ---------------------------------------------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 284 (597)
T 3oja_B 250 ---------------------------------------------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284 (597)
T ss_dssp ---------------------------------------------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred ---------------------------------------------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence 23345888999999999888888899999999999
Q ss_pred CcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 648 LSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 648 L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|++|.+++ +|..+..+++|+.|+|++|+++ .+|..+..+++|+.|++++|++++.. +..+++|+.|++++|||.|
T Consensus 285 Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 285 ISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCC
Confidence 99999985 4666677889999999999998 67778888899999999999988663 4677889999999999998
Q ss_pred CcC
Q 045323 728 GQP 730 (740)
Q Consensus 728 ~~~ 730 (740)
+|.
T Consensus 360 ~~~ 362 (597)
T 3oja_B 360 NSL 362 (597)
T ss_dssp HHH
T ss_pred hhH
Confidence 874
No 41
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=1.9e-30 Score=270.81 Aligned_cols=304 Identities=22% Similarity=0.345 Sum_probs=163.2
Q ss_pred CCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCC
Q 045323 302 CHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNL 381 (740)
Q Consensus 302 ~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l 381 (740)
.+++|++|+++++.+. .++. +. .+++|++|++++|.+++..+ +..+ ++|++|++++|.+.+. ..+..+
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~-~~-~~~~L~~L~l~~n~i~~~~~--~~~l-----~~L~~L~L~~n~i~~~--~~~~~l 109 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG-IE-YLTNLEYLNLNGNQITDISP--LSNL-----VKLTNLYIGTNKITDI--SALQNL 109 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT-GG-GCTTCCEEECCSSCCCCCGG--GTTC-----TTCCEEECCSSCCCCC--GGGTTC
T ss_pred hcccccEEEEeCCccc-cchh-hh-hcCCccEEEccCCccccchh--hhcC-----CcCCEEEccCCcccCc--hHHcCC
Confidence 4455666666666655 3332 22 25555555555555543221 2222 2455555555555432 234445
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++|++|++++|.+.+..+ +..+++|+.|++++|..... ...+..+++|++|++++|.+....+ +..+++|++|++
T Consensus 110 ~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l 184 (347)
T 4fmz_A 110 TNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSL 184 (347)
T ss_dssp TTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEEC
T ss_pred CcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEc
Confidence 555555555555443221 44445555555555533322 1224444445555555444443222 344444444444
Q ss_pred CCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCC
Q 045323 462 SRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQ 541 (740)
Q Consensus 462 ~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 541 (740)
++|.+.+ ++. +..+++|+.|++++|.+.+..+ +..+++|+
T Consensus 185 ~~n~l~~-------------------------------------~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~ 224 (347)
T 4fmz_A 185 NYNQIED-------------------------------------ISP-LASLTSLHYFTAYVNQITDITP--VANMTRLN 224 (347)
T ss_dssp TTSCCCC-------------------------------------CGG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCC
T ss_pred cCCcccc-------------------------------------ccc-ccCCCccceeecccCCCCCCch--hhcCCcCC
Confidence 4444431 111 4455666666666666653322 55566666
Q ss_pred EEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccE
Q 045323 542 LVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG 621 (740)
Q Consensus 542 ~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 621 (740)
.|++++|.+.+..+ +..+++|+.
T Consensus 225 ~L~l~~n~l~~~~~---------------------------------------------------------~~~l~~L~~ 247 (347)
T 4fmz_A 225 SLKIGNNKITDLSP---------------------------------------------------------LANLSQLTW 247 (347)
T ss_dssp EEECCSSCCCCCGG---------------------------------------------------------GTTCTTCCE
T ss_pred EEEccCCccCCCcc---------------------------------------------------------hhcCCCCCE
Confidence 66666666542111 123346666
Q ss_pred EEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCccc
Q 045323 622 LDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 622 L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l 701 (740)
|++++|.+.+ + ..+..+++|++|++++|++++. ..+..+++|+.|++++|++++..|..+..+++|+.|++++|++
T Consensus 248 L~l~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 248 LEIGTNQISD-I-NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp EECCSSCCCC-C-GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred EECCCCccCC-C-hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 6777666653 2 3466667777777777777643 3456677777777777777766666677777777777777777
Q ss_pred ccCCCCcccCCCCccccccccCCC
Q 045323 702 SGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 702 ~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++..| ++.+++|+++++++|+.
T Consensus 324 ~~~~~--~~~l~~L~~L~l~~N~i 345 (347)
T 4fmz_A 324 TDIRP--LASLSKMDSADFANQVI 345 (347)
T ss_dssp CCCGG--GGGCTTCSEESSSCC--
T ss_pred ccccC--hhhhhccceeehhhhcc
Confidence 66655 56677777777777764
No 42
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.97 E-value=5.2e-30 Score=267.55 Aligned_cols=306 Identities=23% Similarity=0.315 Sum_probs=207.4
Q ss_pred hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccc
Q 045323 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWG 356 (740)
Q Consensus 277 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~ 356 (740)
..+++|++|+++++.+... + .+..+++|++|++++|.++ .++. +..+++|++|++++|.+++ ++ .+..
T Consensus 41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~----- 108 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITD-IS-ALQN----- 108 (347)
T ss_dssp HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCC-CG-GGTT-----
T ss_pred hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccC-ch-HHcC-----
Confidence 5789999999999988653 2 4788999999999999998 5555 4448999999999999874 32 3444
Q ss_pred cCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEe
Q 045323 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436 (740)
Q Consensus 357 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 436 (740)
+++|++|++++|.+.+..+ +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|+
T Consensus 109 l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~ 183 (347)
T 4fmz_A 109 LTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS 183 (347)
T ss_dssp CTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred CCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence 4489999999999986543 7889999999999997665444 37889999999999999885433 88999999999
Q ss_pred CCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCC
Q 045323 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516 (740)
Q Consensus 437 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L 516 (740)
+++|.+.+..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++ ++. +..+++|
T Consensus 184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~--------------~~~-~~~l~~L 245 (347)
T 4fmz_A 184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITD--------------LSP-LANLSQL 245 (347)
T ss_dssp CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC--------------CGG-GTTCTTC
T ss_pred ccCCccccccc--ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCC--------------Ccc-hhcCCCC
Confidence 99999986544 7889999999999998873322 3334445555554444431 111 3344444
Q ss_pred cEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccc
Q 045323 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596 (740)
Q Consensus 517 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 596 (740)
++|++++|.+++. ..+..++
T Consensus 246 ~~L~l~~n~l~~~--~~~~~l~---------------------------------------------------------- 265 (347)
T 4fmz_A 246 TWLEIGTNQISDI--NAVKDLT---------------------------------------------------------- 265 (347)
T ss_dssp CEEECCSSCCCCC--GGGTTCT----------------------------------------------------------
T ss_pred CEEECCCCccCCC--hhHhcCC----------------------------------------------------------
Confidence 4444444444321 2233444
Q ss_pred ceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045323 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676 (740)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 676 (740)
+|+.|++++|++.+. ..+..+++|++|+|++|++++..+..++.+++|+.|++++|+
T Consensus 266 ---------------------~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 266 ---------------------KLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp ---------------------TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred ---------------------CcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 455555555555422 235555666666666666655555555556666666666666
Q ss_pred cCccCCcccccCCcCceeeccCcccc
Q 045323 677 LNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 677 l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
+++..| +..+++|+.|++++|+++
T Consensus 323 l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 323 ITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp CCCCGG--GGGCTTCSEESSSCC---
T ss_pred cccccC--hhhhhccceeehhhhccc
Confidence 654333 555566666666666553
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=2.4e-29 Score=260.35 Aligned_cols=195 Identities=25% Similarity=0.308 Sum_probs=110.9
Q ss_pred CCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCc
Q 045323 330 NLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQ 409 (740)
Q Consensus 330 ~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 409 (740)
+++.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~-------~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 105 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS-------PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQ 105 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC-------TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCC
T ss_pred cCCEEECCCCCcc-ccCCCCC-------CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCC
Confidence 4566666666555 3443332 1567777777776655555666777777777777777766666677777777
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcc--cCCCCCCCCcccEEEcCCC
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISG--SLPSCSSPFNIRRVHLSKN 487 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~--~~~~~~~~~~L~~L~l~~n 487 (740)
+|++++|.+. .+|..+. ++|++|++++|.++...+..|.++++|++|++++|.+.. ..+......+|+.|++++|
T Consensus 106 ~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n 182 (332)
T 2ft3_A 106 KLYISKNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA 182 (332)
T ss_dssp EEECCSSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSS
T ss_pred EEECCCCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCC
Confidence 7777777776 3443333 677777777777776666667777777777777777642 2222222114444444444
Q ss_pred cccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 488 MLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 488 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
++++ +|..+. ++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 183 ~l~~--------------l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~ 230 (332)
T 2ft3_A 183 KLTG--------------IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIR 230 (332)
T ss_dssp BCSS--------------CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCC
T ss_pred CCCc--------------cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCC
Confidence 4431 122111 34555555555554444344444444444444444443
No 44
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.1e-28 Score=255.19 Aligned_cols=269 Identities=19% Similarity=0.220 Sum_probs=158.8
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+. ++|++|+++
T Consensus 53 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~--~~L~~L~l~ 129 (330)
T 1xku_A 53 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP--KTLQELRVH 129 (330)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC--TTCCEEECC
T ss_pred CCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc--ccccEEECC
Confidence 5666666666666555556666777777777777776666666777777777777777776 3343332 677777777
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++...+..|.++++|++|++++|.+... +..+..+..+++|++
T Consensus 130 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~----------------------------------~~~~~~~~~l~~L~~ 175 (330)
T 1xku_A 130 ENEITKVRKSVFNGLNQMIVVELGTNPLKSS----------------------------------GIENGAFQGMKKLSY 175 (330)
T ss_dssp SSCCCBBCHHHHTTCTTCCEEECCSSCCCGG----------------------------------GBCTTGGGGCTTCCE
T ss_pred CCcccccCHhHhcCCccccEEECCCCcCCcc----------------------------------CcChhhccCCCCcCE
Confidence 7777766666777777777777777766421 012233444555555
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.++. +|..+. ++|+.|++++|.+.+..|..+.
T Consensus 176 L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~--------------------------------------- 213 (330)
T 1xku_A 176 IRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLK--------------------------------------- 213 (330)
T ss_dssp EECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGT---------------------------------------
T ss_pred EECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhc---------------------------------------
Confidence 5555555542 222221 4555555555555433332222
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|++.+..+..+..+++|++|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus 214 ----------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~ 276 (330)
T 1xku_A 214 ----------------GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276 (330)
T ss_dssp ----------------TCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence 1225555666666665555555666666666666666666 55555666666666666666666
Q ss_pred ccCCccccc------CCcCceeeccCccccc--CCCCcccCCCCccccccccC
Q 045323 679 GKIPPRLIE------LNALAVFSVAFNNLSG--KTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 679 ~~~~~~l~~------l~~L~~L~ls~N~l~~--~~~~~~~~~~~l~~l~l~~N 723 (740)
+..+..|.. .+.|+.+++++|++.. ..|..|..+.+++.+++++|
T Consensus 277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 544444432 2456666666666642 44555666666666766666
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=8.5e-33 Score=300.88 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=115.3
Q ss_pred CCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccc----cCCCCCCCCCCCCEEEccCCcccccCchhhhhcCC--
Q 045323 256 DLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFG----PFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLP-- 329 (740)
Q Consensus 256 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~-- 329 (740)
+|++|+++++++.+.....++..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+...++
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~ 83 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 83 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence 455666666665543333334556666666666666543 22344555667777777777766544545544444
Q ss_pred --CCcEEeccCCccccc----CCCCccCcCccccCCccEEEccCCCCCCcCccccc-----CCCCCCeeecCCCcceecC
Q 045323 330 --NLVVLNVATNAFNGS----IPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-----NLTKLKRLNLDGNHFIGDI 398 (740)
Q Consensus 330 --~L~~L~l~~n~~~~~----~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~ 398 (740)
+|++|++++|.+.+. ++..+... ++|++|++++|.+++..+..+. ..++|++|++++|.+++..
T Consensus 84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~-----~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTL-----PTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TCCCCEEECTTSCCBGGGHHHHHHHTTSC-----TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred CCceeEEEccCCCCCHHHHHHHHHHHccC-----CceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 577777777666532 23333332 2566666666666543222221 2345677777776665422
Q ss_pred ----CcCCCCCCCCceEeCCCcccccCCCcCCC-----CCCCCCEEeCCCCcCcCC----chhhhcCCCCCCEEECCCCc
Q 045323 399 ----PKTLSNCSALQGLYISDNNISGNIPTRLG-----NLSFLDAIMMPNNRLEGP----IPSAFCQLRHLEILDLSRNN 465 (740)
Q Consensus 399 ----~~~l~~~~~L~~L~l~~n~i~~~~~~~~~-----~l~~L~~L~l~~n~~~~~----~~~~l~~l~~L~~L~l~~n~ 465 (740)
+..+..+++|++|++++|.+.+..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 33344456677777776666533222221 244667777777766643 34555666777777777766
Q ss_pred Cc
Q 045323 466 IS 467 (740)
Q Consensus 466 ~~ 467 (740)
+.
T Consensus 239 l~ 240 (461)
T 1z7x_W 239 LG 240 (461)
T ss_dssp CH
T ss_pred CC
Confidence 55
No 46
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=6.5e-29 Score=257.12 Aligned_cols=289 Identities=19% Similarity=0.200 Sum_probs=219.1
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++.++++++.+.. +|..+ .++++.|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 58889999888874 44444 2688999999998887777788888999999999998887778888889999999999
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC-CCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCc
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS-CSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLR 517 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~ 517 (740)
+|.++. +|..+. ++|++|++++|.+.+..+. +..+++|+.|++++|.++.. +..+..+..+ +|+
T Consensus 111 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~-----------~~~~~~~~~l-~L~ 175 (332)
T 2ft3_A 111 KNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS-----------GFEPGAFDGL-KLN 175 (332)
T ss_dssp SSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGG-----------GSCTTSSCSC-CCS
T ss_pred CCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccC-----------CCCcccccCC-ccC
Confidence 988884 343333 7889999998888855554 34588888888888877521 1334555556 888
Q ss_pred EEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 518 YLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 518 ~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
.|++++|.+++ +|..+. ++|+.|++++|.+.+..|..+.
T Consensus 176 ~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~-------------------------------------- 214 (332)
T 2ft3_A 176 YLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLL-------------------------------------- 214 (332)
T ss_dssp CCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSST--------------------------------------
T ss_pred EEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhc--------------------------------------
Confidence 88888888874 444332 6888888888887755444333
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
.+++|+.|++++|++.+..+..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 215 -----------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l 276 (332)
T 2ft3_A 215 -----------------RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNI 276 (332)
T ss_dssp -----------------TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCC
T ss_pred -----------------CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCC
Confidence 2347888889999888777778888899999999999888 6777788888999999999998
Q ss_pred CccCCcccccC------CcCceeeccCcccc--cCCCCcccCCCCccccccccCC
Q 045323 678 NGKIPPRLIEL------NALAVFSVAFNNLS--GKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 678 ~~~~~~~l~~l------~~L~~L~ls~N~l~--~~~~~~~~~~~~l~~l~l~~Np 724 (740)
++..+..+... ..|+.|++++|++. +..|..+..+++|+.+++++|+
T Consensus 277 ~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 277 TKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred CccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 87666666543 56888999999887 6777778888888888888874
No 47
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=1.8e-28 Score=253.70 Aligned_cols=269 Identities=22% Similarity=0.287 Sum_probs=203.4
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+++.++++++.+. .+|..+. +.++.|++++|.+++..+..|..+++|++|++++|.+++..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 3445555554443 2232222 455666666666665544556666666666666666665556666666677777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccc--cCCccccCCCCC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEG--EMPLQLCWLNKL 540 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~--~~~~~~~~l~~L 540 (740)
+|.+....... .++|++|++++|.+++ ..+..+..+++|++|++++|.+.. ..+..+..+++|
T Consensus 109 ~n~l~~l~~~~--~~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 109 KNQLKELPEKM--PKTLQELRVHENEITK-------------VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp SSCCSBCCSSC--CTTCCEEECCSSCCCB-------------BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred CCcCCccChhh--cccccEEECCCCcccc-------------cCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCc
Confidence 77666322222 2577777777776652 334568889999999999999963 567788999999
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.. +|..+ .++|+
T Consensus 174 ~~L~l~~n~l~~-l~~~~---------------------------------------------------------~~~L~ 195 (330)
T 1xku_A 174 SYIRIADTNITT-IPQGL---------------------------------------------------------PPSLT 195 (330)
T ss_dssp CEEECCSSCCCS-CCSSC---------------------------------------------------------CTTCS
T ss_pred CEEECCCCcccc-CCccc---------------------------------------------------------cccCC
Confidence 999999999863 33211 14899
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|++|++++|+++ .+|..+..+++|+.|++++|+
T Consensus 196 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 196 ELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCc
Confidence 9999999999888999999999999999999999888889999999999999999999 788899999999999999999
Q ss_pred cccCCCCcccCC------CCccccccccCCCCCC
Q 045323 701 LSGKTPDRVAQF------GTFEEDSYEGNPFLCG 728 (740)
Q Consensus 701 l~~~~~~~~~~~------~~l~~l~l~~Np~~c~ 728 (740)
+++..+..|... .+++.+++++||+.+.
T Consensus 275 i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~ 308 (330)
T 1xku_A 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 308 (330)
T ss_dssp CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred CCccChhhcCCcccccccccccceEeecCccccc
Confidence 999988877543 7788999999999763
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=3.6e-32 Score=295.97 Aligned_cols=94 Identities=21% Similarity=0.156 Sum_probs=48.1
Q ss_pred hhcCCCCCCEEEcCCCCCCCCCChhHHhcCC----CCCEEEccCCcccc----cCCCCCCCCCCCCEEEccCCcccccCc
Q 045323 250 FLYHQHDLEYVDLSHLNLTREFPNWLLEKNK----KLKRLSLVNISLFG----PFPLPIHCHKNLRVLDVSNNKLQGHIP 321 (740)
Q Consensus 250 ~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~----~L~~L~L~~~~~~~----~~~~~l~~~~~L~~L~l~~~~l~~~~~ 321 (740)
.+..+++|++|++++|.+.+..+..++..++ +|++|++++|.+.. ..+..+..+++|++|++++|.+++..+
T Consensus 51 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~ 130 (461)
T 1z7x_W 51 ALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 130 (461)
T ss_dssp HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHH
T ss_pred HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHH
Confidence 3444455555555555544333333333333 45555555555442 224455666777777777777664434
Q ss_pred hhhhhc----CCCCcEEeccCCcccc
Q 045323 322 IEIGEV----LPNLVVLNVATNAFNG 343 (740)
Q Consensus 322 ~~~~~~----l~~L~~L~l~~n~~~~ 343 (740)
..+... .++|++|++++|.+++
T Consensus 131 ~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 131 QLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHhcCCCcceEEECCCCCCCH
Confidence 433322 2346666666665543
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=8.4e-29 Score=258.64 Aligned_cols=281 Identities=19% Similarity=0.210 Sum_probs=197.2
Q ss_pred cCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEe
Q 045323 357 CFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIM 436 (740)
Q Consensus 357 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 436 (740)
|+.....+.+++.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|+
T Consensus 30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 4445557777777774 333333 5788888888888776666788888888888888888877777788888888888
Q ss_pred CCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCC
Q 045323 437 MPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQL 516 (740)
Q Consensus 437 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L 516 (740)
+++|.++...+..|.++++|++|++++|++.+... ...+..+++|
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~-----------------------------------~~~~~~l~~L 151 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGE-----------------------------------TSLFSHLTKL 151 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCS-----------------------------------SCSCTTCTTC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCc-----------------------------------hhhhccCCCC
Confidence 88888887666668888888888888887763221 0134556666
Q ss_pred cEEecccC-cccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccc
Q 045323 517 RYLILANN-GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595 (740)
Q Consensus 517 ~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 595 (740)
++|++++| .+....+..+..+++|+.|++++|.+.+..|..+..
T Consensus 152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~----------------------------------- 196 (353)
T 2z80_A 152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS----------------------------------- 196 (353)
T ss_dssp CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-----------------------------------
T ss_pred cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-----------------------------------
Confidence 66777666 355444556666777777777777666444443332
Q ss_pred cceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCcccc---CCCCCCEEeC
Q 045323 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFS---HMKQVESLDL 672 (740)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~---~l~~L~~L~L 672 (740)
+++|+.|++++|++....+..+..+++|++|+|++|++++..+..+. ..+.++.++|
T Consensus 197 --------------------l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L 256 (353)
T 2z80_A 197 --------------------IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256 (353)
T ss_dssp --------------------CSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred --------------------cccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhcccc
Confidence 23667777777776533333345577788888888877765544332 3566788888
Q ss_pred CCCccCc----cCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 673 SYNNLNG----KIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 673 s~n~l~~----~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+++.+++ .+|+.+..+++|+.|++++|+++..++..++.+++|+++++++||+.|+|+
T Consensus 257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp ESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 8888774 467778888889999999999887666656888889999999999999886
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.6e-28 Score=251.27 Aligned_cols=251 Identities=20% Similarity=0.240 Sum_probs=145.3
Q ss_pred CeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCC--chhhhcCCCCCCEEECC
Q 045323 385 KRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGP--IPSAFCQLRHLEILDLS 462 (740)
Q Consensus 385 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~--~~~~l~~l~~L~~L~l~ 462 (740)
+.++.+++.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 45667666665 3343332 5777788887777754444567777777777777777632 24555667777777777
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC-ccccCCCCCC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP-LQLCWLNKLQ 541 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~l~~L~ 541 (740)
+|.+... +..+..+++|++|++++|.+.+..+ ..+..+++|+
T Consensus 87 ~n~i~~l-------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 87 FNGVITM-------------------------------------SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp SCSEEEE-------------------------------------EEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred CCccccC-------------------------------------hhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 7766533 2334445555555555555543322 3445555555
Q ss_pred EEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccE
Q 045323 542 LVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSG 621 (740)
Q Consensus 542 ~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 621 (740)
.|++++|.+.+..|..+. .+++|+.
T Consensus 130 ~L~l~~n~l~~~~~~~~~-------------------------------------------------------~l~~L~~ 154 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFN-------------------------------------------------------GLSSLEV 154 (306)
T ss_dssp EEECTTSCCEECSTTTTT-------------------------------------------------------TCTTCCE
T ss_pred EEECCCCcCCccchhhcc-------------------------------------------------------cCcCCCE
Confidence 555555554433332221 1225555
Q ss_pred EEcccCcccc-cChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 622 LDLSCNKLIG-EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 622 L~ls~n~l~~-~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
|++++|.+.+ ..|..+..+++|++|+|++|++++..|..|..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus 155 L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 155 LKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp EECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred EECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCC
Confidence 5555555543 345555556666666666666665555666666666666666666665555555556666666666666
Q ss_pred cccCCCCcccCC-CCccccccccCCCCCCcC
Q 045323 701 LSGKTPDRVAQF-GTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 701 l~~~~~~~~~~~-~~l~~l~l~~Np~~c~~~ 730 (740)
+++..|..+..+ ++|+++++++||+.|+|+
T Consensus 235 l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~ 265 (306)
T 2z66_A 235 IMTSKKQELQHFPSSLAFLNLTQNDFACTCE 265 (306)
T ss_dssp CCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred CcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence 666666555555 356666666666666665
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=7.5e-28 Score=259.26 Aligned_cols=234 Identities=22% Similarity=0.269 Sum_probs=165.9
Q ss_pred CCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcC
Q 045323 406 SALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLS 485 (740)
Q Consensus 406 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~ 485 (740)
++++.|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++++|.++...
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~--------------- 128 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP--------------- 128 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---------------
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---------------
Confidence 34555555555555554555555566666666666555555555666666666666666554221
Q ss_pred CCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCcccccccccc
Q 045323 486 KNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNY 565 (740)
Q Consensus 486 ~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~ 565 (740)
+..|..+++|++|++++|.+....+..+..+++|+.|++++|+..+.++..
T Consensus 129 ---------------------~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-------- 179 (440)
T 3zyj_A 129 ---------------------NGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-------- 179 (440)
T ss_dssp ---------------------TTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT--------
T ss_pred ---------------------HhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc--------
Confidence 223455666666666666666555556666677777777664432222210
Q ss_pred ccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcE
Q 045323 566 REDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHT 645 (740)
Q Consensus 566 ~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~ 645 (740)
.+..+++|+.|++++|++. .+| .+..+++|++
T Consensus 180 ----------------------------------------------~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~ 211 (440)
T 3zyj_A 180 ----------------------------------------------AFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDE 211 (440)
T ss_dssp ----------------------------------------------TTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCE
T ss_pred ----------------------------------------------hhhcccccCeecCCCCcCc-ccc-ccCCCcccCE
Confidence 1223446777777777776 445 3778899999
Q ss_pred EECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 646 LNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 646 L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
|+|++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|++++..++.+..+++|+.|++++|||
T Consensus 212 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 212 LDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp EECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred EECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 99999999988899999999999999999999988888999999999999999999999998889999999999999999
Q ss_pred CCCcCC
Q 045323 726 LCGQPL 731 (740)
Q Consensus 726 ~c~~~l 731 (740)
.|+|.+
T Consensus 292 ~CdC~l 297 (440)
T 3zyj_A 292 NCNCDI 297 (440)
T ss_dssp ECSSTT
T ss_pred cCCCCc
Confidence 999975
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=1.1e-27 Score=258.93 Aligned_cols=115 Identities=21% Similarity=0.293 Sum_probs=97.2
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
+++|+.|++++|++.+ +| .+..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+
T Consensus 195 l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 272 (452)
T 3zyi_A 195 LFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELN 272 (452)
T ss_dssp CTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEE
Confidence 3467777777777763 34 367788888999999998888888888899999999999999888888888899999999
Q ss_pred ccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+++|++++.+++.+..+++|+.|++++|||.|+|.+.
T Consensus 273 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 273 LAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp CCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred CCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence 9999999888888888999999999999999999854
No 53
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.1e-26 Score=234.78 Aligned_cols=114 Identities=20% Similarity=0.255 Sum_probs=57.0
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++++|++++..|..+..+++|+.|+++
T Consensus 130 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 34444444444443333334445555555555555554444445555555555555555554445555555555555555
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+|++++.++..+..+++|+++++++||+.|+|++
T Consensus 210 ~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 243 (285)
T 1ozn_A 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (285)
T ss_dssp SSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred CCcCCcCCHHHcccCcccCEEeccCCCccCCCCc
Confidence 5555554444445555555555555555555543
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.95 E-value=6.1e-27 Score=239.45 Aligned_cols=175 Identities=21% Similarity=0.191 Sum_probs=119.0
Q ss_pred ccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC--CCcCCCCCCCCCEEeC
Q 045323 360 LEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN--IPTRLGNLSFLDAIMM 437 (740)
Q Consensus 360 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~l 437 (740)
-+.++.+++.++. +|..+. +++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++
T Consensus 9 ~~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 85 (306)
T 2z66_A 9 GTEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDL 85 (306)
T ss_dssp TTEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEEC
T ss_pred CCEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEEC
Confidence 4678888888874 344333 6899999999999866666789999999999999998733 2456667899999999
Q ss_pred CCCcCcCCchhhhcCCCCCCEEECCCCcCcccCC--CCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCC
Q 045323 438 PNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLP--SCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQ 515 (740)
Q Consensus 438 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~ 515 (740)
++|.+. .++..+..+++|++|++++|.+.+..+ .+..+++|+.|++++|.+++ ..+..+..+++
T Consensus 86 s~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~ 151 (306)
T 2z66_A 86 SFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-------------AFNGIFNGLSS 151 (306)
T ss_dssp CSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-------------CSTTTTTTCTT
T ss_pred CCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-------------cchhhcccCcC
Confidence 999998 466678899999999999998875433 23335555555555554431 22333444555
Q ss_pred CcEEecccCcccc-cCCccccCCCCCCEEEccCCcCc
Q 045323 516 LRYLILANNGLEG-EMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 516 L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
|++|++++|.+.+ ..|..+..+++|+.|++++|.+.
T Consensus 152 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~ 188 (306)
T 2z66_A 152 LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188 (306)
T ss_dssp CCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred CCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC
Confidence 5555555555543 23444444555555555555444
No 55
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=2.2e-26 Score=236.65 Aligned_cols=256 Identities=18% Similarity=0.196 Sum_probs=126.9
Q ss_pred ccCCCcHHHHHHHHHHhhc-----------CC-----CCCCccccceEecC--------CCCceEEEECCCCCCCCCCCc
Q 045323 4 WSEGCLEQEGYALLKLKHD-----------FF-----NNHCCQWACVECNT--------TTGKVISLDLDGTRKLGDGEG 59 (740)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~-----------~~-----~~~~c~~~~~~c~~--------~~~~v~~ldl~~~~~~~~~~~ 59 (740)
|..++...++.|++++|.. |. ..++|.|.|+.|.. ...+|+.+|++++.+
T Consensus 20 ~~~~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l------ 93 (328)
T 4fcg_A 20 QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPL------ 93 (328)
T ss_dssp C--CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCC------
T ss_pred eccccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCc------
Confidence 4466788899999999985 62 56778888888842 112333333333322
Q ss_pred cccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCcccchhcccCCCCCEEECCCCCCCCccChhhhcCCCCCCEEE
Q 045323 60 YLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSNSFLQMSELMASLKYLSLSNSYLNGTILDQGLCELVYLQEVN 139 (740)
Q Consensus 60 ~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~~l~~L~~L~ 139 (740)
. .+|..+..+++|++|++++|.+. .+|. .+.++++|++|+
T Consensus 94 -----------------------~---------------~lp~~l~~l~~L~~L~L~~n~l~-~lp~-~~~~l~~L~~L~ 133 (328)
T 4fcg_A 94 -----------------------P---------------QFPDQAFRLSHLQHMTIDAAGLM-ELPD-TMQQFAGLETLT 133 (328)
T ss_dssp -----------------------S---------------SCCSCGGGGTTCSEEEEESSCCC-CCCS-CGGGGTTCSEEE
T ss_pred -----------------------h---------------hcChhhhhCCCCCEEECCCCCcc-chhH-HHhccCCCCEEE
Confidence 1 12233334555555555555554 4443 455555555555
Q ss_pred ccCCcccccccccCcCCCCCCEEEcCCCCCCCCCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCccc
Q 045323 140 IDRNNLSGSLPWCLANLTYLRLLDVSFNQLTENISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAE 219 (740)
Q Consensus 140 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~ 219 (740)
+++|.++ .+|..+.++++|++|++++|.+.+.+|. .+.. ..+.
T Consensus 134 Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~-~~~~------~~~~----------------------------- 176 (328)
T 4fcg_A 134 LARNPLR-ALPASIASLNRLRELSIRACPELTELPE-PLAS------TDAS----------------------------- 176 (328)
T ss_dssp EESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCS-CSEE------EC-C-----------------------------
T ss_pred CCCCccc-cCcHHHhcCcCCCEEECCCCCCccccCh-hHhh------ccch-----------------------------
Confidence 5555555 3444555555555555555544444443 2211 0000
Q ss_pred cccccCCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccCCCC
Q 045323 220 IETSHSSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPFPLP 299 (740)
Q Consensus 220 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~ 299 (740)
..+..+.+|+.|++++|.++ .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+..|..
T Consensus 177 -----~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l-~~l~~L~~L~Ls~n~~~~~~p~~ 248 (328)
T 4fcg_A 177 -----GEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAI-HHLPKLEELDLRGCTALRNYPPI 248 (328)
T ss_dssp -----CCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGG-GGCTTCCEEECTTCTTCCBCCCC
T ss_pred -----hhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhh-ccCCCCCEEECcCCcchhhhHHH
Confidence 00011123333333333333 24445555556666666666555 244332 45555555555555555555555
Q ss_pred CCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccC
Q 045323 300 IHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGN 351 (740)
Q Consensus 300 l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 351 (740)
+..+++|++|++++|.+.+.+|..+.. +++|+.|++++|.+.+.+|..+..
T Consensus 249 ~~~l~~L~~L~L~~n~~~~~~p~~~~~-l~~L~~L~L~~n~~~~~iP~~l~~ 299 (328)
T 4fcg_A 249 FGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEKLDLRGCVNLSRLPSLIAQ 299 (328)
T ss_dssp TTCCCCCCEEECTTCTTCCBCCTTGGG-CTTCCEEECTTCTTCCCCCGGGGG
T ss_pred hcCCCCCCEEECCCCCchhhcchhhhc-CCCCCEEeCCCCCchhhccHHHhh
Confidence 555555555555555554445544433 444444444444444444444443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=1e-25 Score=227.73 Aligned_cols=268 Identities=22% Similarity=0.256 Sum_probs=174.8
Q ss_pred cEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCC
Q 045323 361 EYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNN 440 (740)
Q Consensus 361 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n 440 (740)
++++.+++.++.. |..+ .+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~i-p~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSC-CTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccC-CcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 4555555555532 2222 245666666666666555555666666666666666666555566666666666666666
Q ss_pred c-CcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEE
Q 045323 441 R-LEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYL 519 (740)
Q Consensus 441 ~-~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L 519 (740)
. +....+..|..+++|++|++++|.+.+. .+..+..+++|++|
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~------------------------------------~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQEL------------------------------------GPGLFRGLAALQYL 134 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCC------------------------------------CTTTTTTCTTCCEE
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEE------------------------------------CHhHhhCCcCCCEE
Confidence 5 5544455666666666666666655422 23445566777777
Q ss_pred ecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccccee
Q 045323 520 ILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYL 599 (740)
Q Consensus 520 ~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~ 599 (740)
++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~----------------------------------------- 173 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAF----------------------------------------- 173 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTT-----------------------------------------
T ss_pred ECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHh-----------------------------------------
Confidence 777777765555556777777777777777653322222
Q ss_pred eeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 600 TNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
..+++|+.|++++|++.+..|..|..+++|++|+|++|++++..+..+..+++|+.|++++|++..
T Consensus 174 --------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 174 --------------RGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp --------------TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred --------------cCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 223477778888888877778888888889999999998887777778888899999999998874
Q ss_pred cCCcccccCCcCceeeccCcccccCCCCcccC--CCCccccccccC
Q 045323 680 KIPPRLIELNALAVFSVAFNNLSGKTPDRVAQ--FGTFEEDSYEGN 723 (740)
Q Consensus 680 ~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~--~~~l~~l~l~~N 723 (740)
..+. ..-...++.+..+.+.+....|..+.+ +..++..+++||
T Consensus 240 ~~~~-~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 240 DCRA-RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp SGGG-HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred CCCc-HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 3322 122245677778888888888876644 355666666664
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.1e-26 Score=239.14 Aligned_cols=277 Identities=18% Similarity=0.158 Sum_probs=188.7
Q ss_pred cEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceE
Q 045323 332 VVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGL 411 (740)
Q Consensus 332 ~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L 411 (740)
...+.+++.++ .+|..+.. +|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 34 ~~c~~~~~~l~-~iP~~~~~-------~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (353)
T 2z80_A 34 GICKGSSGSLN-SIPSGLTE-------AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL 105 (353)
T ss_dssp SEEECCSTTCS-SCCTTCCT-------TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred eEeeCCCCCcc-cccccccc-------cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence 34455555554 33433321 57777777777776555567777778888888887777767777777888888
Q ss_pred eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCc-CcccCCC-CCCCCcccEEEcCCCc
Q 045323 412 YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNN-ISGSLPS-CSSPFNIRRVHLSKNM 488 (740)
Q Consensus 412 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-~~~~~~~-~~~~~~L~~L~l~~n~ 488 (740)
++++|.+++..+..+..+++|++|++++|.++.... ..+.++++|++|++++|. +....+. +..+++|++|++++|.
T Consensus 106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~ 185 (353)
T 2z80_A 106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185 (353)
T ss_dssp ECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred ECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC
Confidence 888888775444457778888888888887775444 467778888888888874 5544333 3447777888777776
Q ss_pred ccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccC
Q 045323 489 LQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYRED 568 (740)
Q Consensus 489 i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~ 568 (740)
+++ ..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+..
T Consensus 186 l~~-------------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~-------- 244 (353)
T 2z80_A 186 LQS-------------YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST-------- 244 (353)
T ss_dssp CCE-------------ECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------------
T ss_pred cCc-------------cCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccc--------
Confidence 652 34566778888999999988887444444556788999999999887543332211
Q ss_pred CCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccc----cChhhhhcCCCCc
Q 045323 569 NHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG----EIPLQIGELSRIH 644 (740)
Q Consensus 569 ~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~l~~l~~L~ 644 (740)
....+.++.++++++.+.+ .+|..+..+++|+
T Consensus 245 --------------------------------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~ 280 (353)
T 2z80_A 245 --------------------------------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLL 280 (353)
T ss_dssp ----------------------------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCC
T ss_pred --------------------------------------------ccccchhhccccccccccCcchhhhHHHHhcccCCC
Confidence 0122356666777666654 3677788888888
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC
Q 045323 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI 681 (740)
Q Consensus 645 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~ 681 (740)
+|+|++|+++...+..|+.+++|++|++++|++.+..
T Consensus 281 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred EEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 8888888888554455688888888888888887543
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=2e-28 Score=275.33 Aligned_cols=249 Identities=16% Similarity=0.119 Sum_probs=128.9
Q ss_pred CCCCccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCC------------------------
Q 045323 25 NNHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSIL------------------------ 80 (740)
Q Consensus 25 ~~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~------------------------ 80 (740)
+.-|.+|.++.+.. -..+.+.+. . .......+.++++|++|+++++
T Consensus 38 s~vck~W~~~~~~~----~~~l~~~~~-~-----~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 38 SLVCRRWFKIDSET----REHVTMALC-Y-----TATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107 (592)
T ss_dssp TTSCHHHHHHHHHH----CCEEEESCG-G-----GSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHhHHHHHhhhcc----ccEEEEeec-c-----ccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH
Confidence 35567898875322 112233221 1 1233456778889999999652
Q ss_pred --CCCCCcEEeCCCCCCcCcccchhccc-CC-CCCEEECCCCCC-CCccChhhhcCCCCCCEEEccCCccccc----ccc
Q 045323 81 --NFKNLEYFNMDFCTAFSNSFLQMSEL-MA-SLKYLSLSNSYL-NGTILDQGLCELVYLQEVNIDRNNLSGS----LPW 151 (740)
Q Consensus 81 --~l~~L~~L~l~~~~~~~~~~~~~l~~-l~-~L~~L~Ls~n~~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 151 (740)
.+++|+.|+++ .+.+.+..+..+.. ++ +|++|++++|.. ........+.++++|++|+|++|.+++. ++.
T Consensus 108 ~~~~~~L~~L~L~-~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~ 186 (592)
T 3ogk_B 108 SNNLRQLKSVHFR-RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHE 186 (592)
T ss_dssp HHHCTTCCEEEEE-SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHH
T ss_pred HhhCCCCCeEEee-ccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHH
Confidence 45667777776 44555554444443 23 377777776651 1000011234667777777777766544 223
Q ss_pred cCcCCCCCCEEEcCCCCCCC----CCCccccCCCCCCCEEeccCCcccccCCccccccCCCccEEeCCCcccc---cccc
Q 045323 152 CLANLTYLRLLDVSFNQLTE----NISSSPLMNLTYIEELWLSNNHFQISISLEPFFNHSKLKFFDGDIYAEI---ETSH 224 (740)
Q Consensus 152 ~l~~l~~L~~L~l~~n~l~~----~i~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~~~ 224 (740)
.+..+++|++|++++|.+++ .++. .+..+++|++|++++|.+.+ ++ ..+.++++|+.+++...... ....
T Consensus 187 ~~~~~~~L~~L~L~~n~~~~~~~~~l~~-~~~~~~~L~~L~L~~~~~~~-l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 187 LAQHNTSLEVLNFYMTEFAKISPKDLET-IARNCRSLVSVKVGDFEILE-LV-GFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHHHCCCCCEEECTTCCCSSCCHHHHHH-HHHHCTTCCEEECSSCBGGG-GH-HHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred HHhcCCCccEEEeeccCCCccCHHHHHH-HHhhCCCCcEEeccCccHHH-HH-HHHhhhhHHHhhcccccccccchHHHH
Confidence 34566777777777776652 1121 33456777777777766653 22 34556666666666532111 1112
Q ss_pred CCCCCCccccEEEecCCCCCCCCChhhcCCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEcc
Q 045323 225 SSLTPKFQLTSISLFGHGDSGIFPKFLYHQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLV 288 (740)
Q Consensus 225 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~ 288 (740)
..+..+.+|+.+.+.+.. ...++..+..+++|++|++++|.+.+.....++..+++|++|++.
T Consensus 264 ~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp SCCCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred HHhhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 233334455555555432 222444445555555555555554433222223445555555555
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=3.3e-28 Score=273.56 Aligned_cols=403 Identities=12% Similarity=0.057 Sum_probs=262.3
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCC-CCEEEccCCcccc--cCCCCCCCCCCCCEEEccCCcccccCch---hhhh
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKK-LKRLSLVNISLFG--PFPLPIHCHKNLRVLDVSNNKLQGHIPI---EIGE 326 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~-L~~L~L~~~~~~~--~~~~~l~~~~~L~~L~l~~~~l~~~~~~---~~~~ 326 (740)
.+++|++|++++|.+.+..+.++...+++ |++|++++|.... ..+.....+++|++|++++|.+++.... .+..
T Consensus 110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 67889999999988776666555433455 9999998886321 1122234678899999999987754322 2333
Q ss_pred cCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcce---ecCCcCCC
Q 045323 327 VLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFI---GDIPKTLS 403 (740)
Q Consensus 327 ~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l~ 403 (740)
.+++|++|++++|.+.+.....+.... ..+++|++|++++|.+.+ .+..+..+++|++|+++.+... ......+.
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~-~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIA-RNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHH-HHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHH-hhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 478999999998887632222221111 134589999999988775 4566778899999999754322 12334567
Q ss_pred CCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCcCcccCCCC-CCCCcccE
Q 045323 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISGSLPSC-SSPFNIRR 481 (740)
Q Consensus 404 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~~~~~~-~~~~~L~~ 481 (740)
.+++|+.++++++... .++..+..+++|++|++++|.+++... ..+.++++|++|+++++...+.++.. ..+++|++
T Consensus 268 ~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~ 346 (592)
T 3ogk_B 268 FPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKR 346 (592)
T ss_dssp CCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred ccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCE
Confidence 7788999988876433 556677788899999999988764433 34678999999999843222222222 23778999
Q ss_pred EEcCC-----------CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccC-CCCCCEEEccC--
Q 045323 482 VHLSK-----------NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCW-LNKLQLVDLSH-- 547 (740)
Q Consensus 482 L~l~~-----------n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~l~~-- 547 (740)
|++++ +.+++. .++.....+++|++|+++.+.+++..+..+.. +++|+.|++++
T Consensus 347 L~L~~g~~~~~~~~~~~~~~~~------------~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~ 414 (592)
T 3ogk_B 347 LRIERGADEQGMEDEEGLVSQR------------GLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414 (592)
T ss_dssp EEEECCCCSSTTSSTTCCCCHH------------HHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECS
T ss_pred EEeecCccccccccccCccCHH------------HHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecC
Confidence 99983 333211 11223445889999999888888666655554 88999999973
Q ss_pred --CcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcc
Q 045323 548 --NNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLS 625 (740)
Q Consensus 548 --n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls 625 (740)
|.+++...+. .+.. .+..+++|+.|+++
T Consensus 415 ~~n~l~~~p~~~---------------------------~~~~-----------------------~~~~~~~L~~L~L~ 444 (592)
T 3ogk_B 415 REERITDLPLDN---------------------------GVRS-----------------------LLIGCKKLRRFAFY 444 (592)
T ss_dssp CCSCCSSCCCHH---------------------------HHHH-----------------------HHHHCTTCCEEEEE
T ss_pred CCccccCchHHH---------------------------HHHH-----------------------HHHhCCCCCEEEEe
Confidence 3443210000 0000 02235688888887
Q ss_pred cCc--ccccChhhhhc-CCCCcEEECcCCcCccc-CCccccCCCCCCEEeCCCCccCcc-CCcccccCCcCceeeccCcc
Q 045323 626 CNK--LIGEIPLQIGE-LSRIHTLNLSHNNLTGE-SPVTFSHMKQVESLDLSYNNLNGK-IPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 626 ~n~--l~~~~~~~l~~-l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~ls~N~ 700 (740)
+|. +++..+..+.. +++|++|+|++|++++. .+..+..+++|++|++++|++++. ++.....+++|+.|++++|+
T Consensus 445 ~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 445 LRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB
T ss_pred cCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc
Confidence 544 55555555544 78899999999988763 344557788899999999988744 34455678889999999998
Q ss_pred cccCCCCcc-cCCCCcccccc
Q 045323 701 LSGKTPDRV-AQFGTFEEDSY 720 (740)
Q Consensus 701 l~~~~~~~~-~~~~~l~~l~l 720 (740)
++......+ ..++.+....+
T Consensus 525 it~~~~~~l~~~~p~l~~~~~ 545 (592)
T 3ogk_B 525 ASMTGQDLMQMARPYWNIELI 545 (592)
T ss_dssp CCTTCTTGGGGCCTTEEEEEE
T ss_pred CCHHHHHHHHHhCCCcEEEEe
Confidence 765533222 34455544333
No 60
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.93 E-value=1.3e-25 Score=230.93 Aligned_cols=237 Identities=19% Similarity=0.249 Sum_probs=178.0
Q ss_pred CCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEE
Q 045323 381 LTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILD 460 (740)
Q Consensus 381 l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~ 460 (740)
.+.++.|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+.++++|++|+
T Consensus 80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 477888888888887 56666777888888888888888 77888888888888888888888 6677788888888888
Q ss_pred CCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 461 LSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 461 l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
+++|.+.+.+|.... .. ..+..+..+++|++|++++|.++ .+|..+..+++|
T Consensus 157 L~~n~~~~~~p~~~~-----~~----------------------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L 208 (328)
T 4fcg_A 157 IRACPELTELPEPLA-----ST----------------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNL 208 (328)
T ss_dssp EEEETTCCCCCSCSE-----EE----------------------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTC
T ss_pred CCCCCCccccChhHh-----hc----------------------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCC
Confidence 888776655543211 11 11233556788888888888887 667778888888
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.+ +|..+. .+++|+
T Consensus 209 ~~L~L~~N~l~~-l~~~l~-------------------------------------------------------~l~~L~ 232 (328)
T 4fcg_A 209 KSLKIRNSPLSA-LGPAIH-------------------------------------------------------HLPKLE 232 (328)
T ss_dssp CEEEEESSCCCC-CCGGGG-------------------------------------------------------GCTTCC
T ss_pred CEEEccCCCCCc-Cchhhc-------------------------------------------------------cCCCCC
Confidence 888888888763 332222 234778
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcc
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNN 700 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~ 700 (740)
.|++++|++.+.+|..+..+++|++|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|+.+..+++|+.++++.|.
T Consensus 233 ~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 233 ELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp EEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred EEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 88888888777778778888888888888887777778778888888888888888877888888888888888877766
Q ss_pred cccC
Q 045323 701 LSGK 704 (740)
Q Consensus 701 l~~~ 704 (740)
+...
T Consensus 313 ~~~l 316 (328)
T 4fcg_A 313 QAQL 316 (328)
T ss_dssp SCC-
T ss_pred HHHH
Confidence 5433
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.4e-24 Score=234.52 Aligned_cols=228 Identities=22% Similarity=0.193 Sum_probs=115.0
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++++.|++++|.+.+..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34455555555555444444555555555555555555444445555555555555555555444444555555555555
Q ss_pred CCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 462 SRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 462 ~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
++|.+....+.. ..+++|+.|++++|... ....+..|..+++|++|++++|.+++. | .+..+++|
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l------------~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L 220 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKL------------EYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGL 220 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTC------------CEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCc------------cccChhhccCCCCCCEEECCCCccccc-c-cccccccc
Confidence 555544322211 11333333333332110 001122355566666666666666532 2 35555666
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|.+.+..|..|.+ +++|+
T Consensus 221 ~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~ 245 (452)
T 3zyi_A 221 EELEMSGNHFPEIRPGSFHG-------------------------------------------------------LSSLK 245 (452)
T ss_dssp CEEECTTSCCSEECGGGGTT-------------------------------------------------------CTTCC
T ss_pred cEEECcCCcCcccCcccccC-------------------------------------------------------ccCCC
Confidence 66666666655433332222 22555
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 246 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 246 KLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred EEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 6666666665555555555666666666666666555555555566666666666554
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=1.3e-24 Score=233.84 Aligned_cols=228 Identities=27% Similarity=0.257 Sum_probs=127.2
Q ss_pred CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEEC
Q 045323 382 TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDL 461 (740)
Q Consensus 382 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l 461 (740)
++++.|++++|.+....+..|..+++|++|++++|.+....+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 44555555555555555555555555555555555555444455555566666666666555554455556666666666
Q ss_pred CCCcCcccCCCC-CCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCC
Q 045323 462 SRNNISGSLPSC-SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKL 540 (740)
Q Consensus 462 ~~n~~~~~~~~~-~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L 540 (740)
++|.+....+.. ..+++|+.|++++|... ....+..|..+++|++|++++|.++ .+| .+..+++|
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l------------~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L 209 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRL------------SYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKL 209 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTC------------CEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSC
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCc------------ceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCccc
Confidence 666555333221 12344444444432211 0111234556677777777777766 233 35566666
Q ss_pred CEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCcc
Q 045323 541 QLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMS 620 (740)
Q Consensus 541 ~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 620 (740)
+.|++++|++.+..|..|.+ +++|+
T Consensus 210 ~~L~Ls~N~l~~~~~~~~~~-------------------------------------------------------l~~L~ 234 (440)
T 3zyj_A 210 DELDLSGNHLSAIRPGSFQG-------------------------------------------------------LMHLQ 234 (440)
T ss_dssp CEEECTTSCCCEECTTTTTT-------------------------------------------------------CTTCC
T ss_pred CEEECCCCccCccChhhhcc-------------------------------------------------------CccCC
Confidence 66666666665444433322 23666
Q ss_pred EEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 621 GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 621 ~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 235 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 235 KLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred EEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 6666666666666666666666666666666666666666666666666666666654
No 63
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4e-26 Score=247.71 Aligned_cols=248 Identities=22% Similarity=0.211 Sum_probs=164.5
Q ss_pred CCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEc
Q 045323 405 CSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHL 484 (740)
Q Consensus 405 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l 484 (740)
+++|++|++++|.+.+..+..|..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+..+ .++|+.|++
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3455555555555555444555555666666666665554333 5556666666666666553322 256666666
Q ss_pred CCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccc
Q 045323 485 SKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFN 564 (740)
Q Consensus 485 ~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~ 564 (740)
++|.+++. + ...+++|+.|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 107 ~~N~l~~~--------------~--~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~----- 165 (487)
T 3oja_A 107 ANNNISRV--------------S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA----- 165 (487)
T ss_dssp CSSCCCCE--------------E--ECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGG-----
T ss_pred cCCcCCCC--------------C--ccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHh-----
Confidence 66665422 1 12356778888888887776666777778888888888877655444332
Q ss_pred cccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCc
Q 045323 565 YREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIH 644 (740)
Q Consensus 565 ~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~ 644 (740)
..+++|+.|++++|.+++..+ +..+++|+
T Consensus 166 -------------------------------------------------~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~ 194 (487)
T 3oja_A 166 -------------------------------------------------ASSDTLEHLNLQYNFIYDVKG--QVVFAKLK 194 (487)
T ss_dssp -------------------------------------------------GGTTTCCEEECTTSCCCEEEC--CCCCTTCC
T ss_pred -------------------------------------------------hhCCcccEEecCCCccccccc--cccCCCCC
Confidence 123477788888888775522 33578888
Q ss_pred EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc-cCCCCcccCCCCccccccc--
Q 045323 645 TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS-GKTPDRVAQFGTFEEDSYE-- 721 (740)
Q Consensus 645 ~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~-~~~~~~~~~~~~l~~l~l~-- 721 (740)
+|+|++|.+++.+|. +..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.++.+++.
T Consensus 195 ~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~~~ 272 (487)
T 3oja_A 195 TLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (487)
T ss_dssp EEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecccc
Confidence 888888888865444 7778888888888888884 6667777888888888888876 5566667777788888876
Q ss_pred -----cCCCCCCcCCC
Q 045323 722 -----GNPFLCGQPLL 732 (740)
Q Consensus 722 -----~Np~~c~~~l~ 732 (740)
+||+.|+|+..
T Consensus 273 ~~~~~~~~~~c~~~~~ 288 (487)
T 3oja_A 273 KKLTGQNEEECTVPTL 288 (487)
T ss_dssp HHHTSSSSCCCSSTTC
T ss_pred ccccCCCcccccCCcc
Confidence 88999988643
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=1.5e-26 Score=237.29 Aligned_cols=269 Identities=20% Similarity=0.180 Sum_probs=190.5
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 46666677666654444445566788888888888887666777888888888888888875443 7788888888888
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.+++.. ..++|++|++++|.+.+..+.. +++|+.|++++|++++ ..+..+..+++|++
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~N~l~~-------------~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR--GQGKKNIYLANNKITM-------------LRDLDEGCRSRVQY 148 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC--CSSCEEEECCSSCCCS-------------GGGBCTGGGSSEEE
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCccc--cCCCCEEECCCCCCCC-------------ccchhhhccCCCCE
Confidence 88876432 3478888888888877554332 5678888887777653 23345666778888
Q ss_pred EecccCcccccCCccc-cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccc
Q 045323 519 LILANNGLEGEMPLQL-CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHK 597 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~ 597 (740)
|++++|.+.+..+..+ ..+++|+.|++++|.+.+. |.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~----------------------------------------- 186 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG----------------------------------------- 186 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-----------------------------------------
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc-----------------------------------------
Confidence 8888888876655554 3577888888888876522 10
Q ss_pred eeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCcc
Q 045323 598 YLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNL 677 (740)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l 677 (740)
...+++|+.|++++|++.+. |..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++
T Consensus 187 ---------------~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 187 ---------------QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ---------------CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ---------------ccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 11245788888888888744 344777888888888888888 4566677788888888888888
Q ss_pred C-ccCCcccccCCcCceeeccCc-ccccCCCCc
Q 045323 678 N-GKIPPRLIELNALAVFSVAFN-NLSGKTPDR 708 (740)
Q Consensus 678 ~-~~~~~~l~~l~~L~~L~ls~N-~l~~~~~~~ 708 (740)
. +.+|..+..+++|+.+++++| .+.+..|..
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 7 667777777888888888855 466665543
No 65
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.2e-24 Score=218.74 Aligned_cols=166 Identities=22% Similarity=0.255 Sum_probs=116.5
Q ss_pred ccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 509 WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
.+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------------------------------ 120 (276)
T 2z62_A 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI------------------------------ 120 (276)
T ss_dssp TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC------------------------------
T ss_pred HccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCccccCchhc------------------------------
Confidence 34455666666666666665555556666666666666666653322211
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc-ChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE-IPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~-~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
..+++|+.|++++|++.+. +|..+..+++|++|+|++|++++..+..+..+++|
T Consensus 121 -------------------------~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 121 -------------------------GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp -------------------------TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred -------------------------ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 2234677777777777643 47778888888888888888887777777766666
Q ss_pred C----EEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 668 E----SLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 668 ~----~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+ +|++++|++++..+..+. ..+|+.|++++|++++.++..++.+++|+++++++||+.|+|+
T Consensus 176 ~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 176 PLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred cccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 6 788888888855554443 3478888888888888877777888888888899999988886
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.5e-24 Score=213.46 Aligned_cols=206 Identities=21% Similarity=0.260 Sum_probs=166.8
Q ss_pred CCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccc
Q 045323 455 HLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQL 534 (740)
Q Consensus 455 ~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~ 534 (740)
..+.++++++.++. +|.. .++++++|++++|.+++ ..+..|..+++|++|++++|.++...+..+
T Consensus 17 ~~~~l~~~~~~l~~-ip~~-~~~~l~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~ 81 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSN-IPADTKKLDLQSNKLSS-------------LPSKAFHRLTKLRLLYLNDNKLQTLPAGIF 81 (270)
T ss_dssp TTTEEECTTSCCSS-CCSC-CCTTCSEEECCSSCCSC-------------CCTTSSSSCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCCEEEccCCCCCc-cCCC-CCCCCCEEECcCCCCCe-------------eCHHHhcCCCCCCEEECCCCccCeeChhhh
Confidence 35566666666653 2221 13466677776666542 233467788999999999999986666667
Q ss_pred cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecc
Q 045323 535 CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQ 614 (740)
Q Consensus 535 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 614 (740)
..+++|+.|++++|.+.+..+..+.
T Consensus 82 ~~l~~L~~L~l~~n~l~~~~~~~~~------------------------------------------------------- 106 (270)
T 2o6q_A 82 KELKNLETLWVTDNKLQALPIGVFD------------------------------------------------------- 106 (270)
T ss_dssp SSCTTCCEEECCSSCCCCCCTTTTT-------------------------------------------------------
T ss_pred cCCCCCCEEECCCCcCCcCCHhHcc-------------------------------------------------------
Confidence 8899999999999988744433322
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|++|++++|++++..+..+..+++|+.|
T Consensus 107 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 186 (270)
T 2o6q_A 107 QLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTL 186 (270)
T ss_dssp TCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred cccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEE
Confidence 34489999999999998888889999999999999999998888889999999999999999998777789999999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 187 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred ECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence 999999999888888999999999999999999997
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.92 E-value=1.8e-25 Score=229.31 Aligned_cols=260 Identities=20% Similarity=0.189 Sum_probs=206.0
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
.++..+++.+.+.......+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 34556677776655444455667789999999999997777788999999999999999886554 8889999999999
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+.+..+ .++|+.|++++|.+++. + ...+++|++|++++|.+++..+..+..+++|+.
T Consensus 89 ~n~l~~l~~----~~~L~~L~l~~n~l~~~--------------~--~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 89 NNYVQELLV----GPSIETLHAANNNISRV--------------S--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp SSEEEEEEE----CTTCCEEECCSSCCSEE--------------E--ECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred CCccccccC----CCCcCEEECCCCccCCc--------------C--ccccCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 998875432 37899999999887632 1 223678999999999998777778888899999
Q ss_pred EEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEE
Q 045323 543 VDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGL 622 (740)
Q Consensus 543 L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L 622 (740)
|++++|.+.+..|..+. ..+++|+.|
T Consensus 149 L~Ls~N~l~~~~~~~~~------------------------------------------------------~~l~~L~~L 174 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELA------------------------------------------------------ASSDTLEHL 174 (317)
T ss_dssp EECTTSCCCEEEGGGGG------------------------------------------------------GGTTTCCEE
T ss_pred EECCCCCCCcccHHHHh------------------------------------------------------hccCcCCEE
Confidence 99999988754433221 134589999
Q ss_pred EcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccc
Q 045323 623 DLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 623 ~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
++++|.+++. +. ...+++|++|+|++|++++..+ .+..+++|+.|++++|+++ .+|+.+..+++|+.|++++|++.
T Consensus 175 ~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 175 NLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp ECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCB
T ss_pred ECCCCcCccc-cc-ccccccCCEEECCCCcCCcchh-hhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCcc
Confidence 9999999854 32 3458999999999999996544 4888999999999999998 56778888999999999999998
Q ss_pred -cCCCCcccCCCCcccccccc
Q 045323 703 -GKTPDRVAQFGTFEEDSYEG 722 (740)
Q Consensus 703 -~~~~~~~~~~~~l~~l~l~~ 722 (740)
+..|..+..++.|+.+++++
T Consensus 251 ~~~~~~~~~~~~~L~~l~l~~ 271 (317)
T 3o53_A 251 CGTLRDFFSKNQRVQTVAKQT 271 (317)
T ss_dssp HHHHHHHHHTCHHHHHHHHHH
T ss_pred CcCHHHHHhccccceEEECCC
Confidence 77788888889999999883
No 68
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.92 E-value=4e-26 Score=233.54 Aligned_cols=158 Identities=24% Similarity=0.291 Sum_probs=112.6
Q ss_pred CCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcc
Q 045323 514 PQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++|++|++++|.+.+..+..+..+++|+.|++++|++.+.++..
T Consensus 149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~------------------------------------ 192 (312)
T 1wwl_A 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI------------------------------------ 192 (312)
T ss_dssp TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH------------------------------------
T ss_pred CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH------------------------------------
Confidence 67777777777777666677777778888888877764321100
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccc---cChhhhhcCCCCcEEECcCCcCcccCC-ccccCCCCCCE
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIG---EIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHMKQVES 669 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~---~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l~~L~~ 669 (740)
....+..+++|+.|++++|++.+ .....+..+++|++|+|++|++++..| ..+..+++|+.
T Consensus 193 ---------------~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~ 257 (312)
T 1wwl_A 193 ---------------SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNS 257 (312)
T ss_dssp ---------------HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCE
T ss_pred ---------------HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCE
Confidence 00011344578888888888762 122334567888888888888887664 45566788889
Q ss_pred EeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 670 LDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 670 L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
|+|++|+++ .+|..+. ++|+.|++++|++++. |. +..+++|+++++++||+..
T Consensus 258 L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 258 LNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp EECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred EECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 999998888 6676665 7888899999988877 55 7888888889999888753
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=7e-24 Score=213.70 Aligned_cols=208 Identities=25% Similarity=0.253 Sum_probs=165.4
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCccccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
+.+++++++++++++.++...+.. ++.++.|++++|.+++ ..+..+..+++|+.|++++|.+++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~--~~~l~~L~L~~N~l~~-------------~~~~~~~~l~~L~~L~L~~n~l~~~ 70 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYT-------------FSLATLMPYTRLTQLNLDRAELTKL 70 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSE-------------EEGGGGTTCTTCCEEECTTSCCCEE
T ss_pred ccccCCccEEECCCCCCCcCCCCC--CCCCCEEEcCCCcCCc-------------cCHHHhhcCCCCCEEECCCCccCcc
Confidence 345566666666666665332222 3566777777666542 3356678899999999999999854
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 609 (740)
.+ ...+++|+.|++++|.+. .+|..+
T Consensus 71 ~~--~~~l~~L~~L~Ls~N~l~-~l~~~~--------------------------------------------------- 96 (290)
T 1p9a_G 71 QV--DGTLPVLGTLDLSHNQLQ-SLPLLG--------------------------------------------------- 96 (290)
T ss_dssp EC--CSCCTTCCEEECCSSCCS-SCCCCT---------------------------------------------------
T ss_pred cC--CCCCCcCCEEECCCCcCC-cCchhh---------------------------------------------------
Confidence 33 367899999999999886 344322
Q ss_pred eeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCC
Q 045323 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN 689 (740)
Q Consensus 610 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~ 689 (740)
..+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..+..++
T Consensus 97 ----~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~ 172 (290)
T 1p9a_G 97 ----QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172 (290)
T ss_dssp ----TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCT
T ss_pred ----ccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcC
Confidence 2345899999999999977778899999999999999999988888899999999999999999976667788899
Q ss_pred cCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 690 ALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 690 ~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
+|+.|++++|+++.. |..+....+|+.+++++|||.|+|.+
T Consensus 173 ~L~~L~L~~N~l~~i-p~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 173 NLDTLLLQENSLYTI-PKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp TCCEEECCSSCCCCC-CTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCCEEECCCCcCCcc-ChhhcccccCCeEEeCCCCccCcCcc
Confidence 999999999999965 55556778999999999999999974
No 70
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=2.2e-23 Score=230.36 Aligned_cols=246 Identities=25% Similarity=0.333 Sum_probs=143.9
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
+|++|++++|.++. ++. .+++|++|++++|++++ +|. .+++|++|++++|.+++ ++. .+++|+.|+++
T Consensus 62 ~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 62 HITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLTH-LPA---LPSGLCKLWIF 129 (622)
T ss_dssp TCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCCC-CCC---CCTTCCEEECC
T ss_pred CCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCCC-CCC---CCCCcCEEECC
Confidence 45555555555542 222 23555555555555542 222 34555555665555553 222 34555666666
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++. +|. .+++|++|++++|.+.+. +. .+.+|+.|++++|.++ .+| ..+++|+.
T Consensus 130 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~l-~~--~~~~L~~L~L~~N~l~--------------~l~---~~~~~L~~ 185 (622)
T 3g06_A 130 GNQLTS-LPV---LPPGLQELSVSDNQLASL-PA--LPSELCKLWAYNNQLT--------------SLP---MLPSGLQE 185 (622)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCC-CC--CCTTCCEEECCSSCCS--------------CCC---CCCTTCCE
T ss_pred CCCCCc-CCC---CCCCCCEEECcCCcCCCc-CC--ccCCCCEEECCCCCCC--------------CCc---ccCCCCcE
Confidence 665553 222 235666666666666532 21 2456666666666654 223 23566777
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.+++ +|. .+++|+.|++++|.+.. +|.
T Consensus 186 L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~~------------------------------------------ 218 (622)
T 3g06_A 186 LSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS-LPA------------------------------------------ 218 (622)
T ss_dssp EECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-CCC------------------------------------------
T ss_pred EECCCCCCCC-CCC---ccchhhEEECcCCcccc-cCC------------------------------------------
Confidence 7777777763 332 23677777777776652 221
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|++++ +| ..+++|++|+|++|+++ .+|. .+++|+.|+|++|+++
T Consensus 219 ----------------~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~ 274 (622)
T 3g06_A 219 ----------------LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT 274 (622)
T ss_dssp ----------------CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC
Confidence 11367777777777764 44 34577778888888777 3443 4567778888888777
Q ss_pred ccCCcccccCCcCceeeccCcccccCCCCcccCC
Q 045323 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF 712 (740)
Q Consensus 679 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~ 712 (740)
.+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 275 -~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 275 -RLPESLIHLSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp -SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred -cCCHHHhhccccCEEEecCCCCCCcCHHHHHhc
Confidence 667777777788888888888777766654444
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.91 E-value=1.2e-24 Score=236.19 Aligned_cols=224 Identities=20% Similarity=0.155 Sum_probs=191.5
Q ss_pred CCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCC
Q 045323 426 LGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSN 505 (740)
Q Consensus 426 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~ 505 (740)
...+++|+.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|+.|++++|.+++.
T Consensus 30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l------------- 95 (487)
T 3oja_A 30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL------------- 95 (487)
T ss_dssp STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEE-------------
T ss_pred cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCC-------------
Confidence 3456799999999999998888999999999999999999987665 67799999999999998732
Q ss_pred CCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 506 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+ ..++|+.|++++|.+.+..+. .+++|+.|++++|.+.+..|..+..
T Consensus 96 -~----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~------------------------- 142 (487)
T 3oja_A 96 -L----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC------------------------- 142 (487)
T ss_dssp -E----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-------------------------
T ss_pred -C----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-------------------------
Confidence 2 238999999999999865543 4689999999999998765554433
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhh-cCCCCcEEECcCCcCcccCCccccCC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG-ELSRIHTLNLSHNNLTGESPVTFSHM 664 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~-~l~~L~~L~L~~N~l~~~~~~~l~~l 664 (740)
+++|+.|++++|.+.+..|..+. .+++|++|+|++|.+++..+ +..+
T Consensus 143 ------------------------------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l 190 (487)
T 3oja_A 143 ------------------------------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVF 190 (487)
T ss_dssp ------------------------------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCC
T ss_pred ------------------------------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccC
Confidence 34899999999999988888886 79999999999999997643 3468
Q ss_pred CCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 665 KQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 665 ~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++|+.|+|++|.+++. |+.+..+++|+.|++++|.+++. |..+..+++|+.+++++||+.|++.
T Consensus 191 ~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 191 AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred CCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCCCCcCcch
Confidence 9999999999999965 44588999999999999999985 5557899999999999999998764
No 72
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=6.3e-27 Score=263.30 Aligned_cols=411 Identities=15% Similarity=0.132 Sum_probs=201.4
Q ss_pred CCCCCCEEEcCCCCCCCCCChhHHhcCCCCCEEEccCCccccc--CCCCCCCCCCCCEEEccCCcccccCchhhh---hc
Q 045323 253 HQHDLEYVDLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGP--FPLPIHCHKNLRVLDVSNNKLQGHIPIEIG---EV 327 (740)
Q Consensus 253 ~l~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~--~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~---~~ 327 (740)
.+++|++|++++|.+.+..+..+...+++|++|++.+|..... .+.....+++|++|++++|.+++..+..+. ..
T Consensus 103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 4455555555555554444444333455555555555522111 122223445555555555554433222221 12
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCc-------ceecCCc
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNH-------FIGDIPK 400 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-------~~~~~~~ 400 (740)
+++|++|++++|. .......+..+.. .+++|++|++++|......+..+..+++|+.|++..+. +.+ ++.
T Consensus 183 ~~~L~~L~l~~~~-~~~~~~~l~~l~~-~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~ 259 (594)
T 2p1m_B 183 YTSLVSLNISCLA-SEVSFSALERLVT-RCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSV 259 (594)
T ss_dssp CCCCCEEECTTCC-SCCCHHHHHHHHH-HCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHH
T ss_pred CCcCcEEEecccC-CcCCHHHHHHHHH-hCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHH
Confidence 3455555555553 0000011111000 12355555555552111233334445555555543332 111 111
Q ss_pred CCCCCCCCceE-eCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCch-hhhcCCCCCCEEECCCCcCcc-cCCCCC-CC
Q 045323 401 TLSNCSALQGL-YISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIP-SAFCQLRHLEILDLSRNNISG-SLPSCS-SP 476 (740)
Q Consensus 401 ~l~~~~~L~~L-~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~n~~~~-~~~~~~-~~ 476 (740)
.+.++++|+.+ .+.+.... .++..+..+++|++|++++|.+++... ..+..+++|++|++++| +.. .++... .+
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~ 337 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTC 337 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHC
T ss_pred HHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhC
Confidence 33445555555 22221111 222223345666667776666543222 22446666777766666 221 111111 25
Q ss_pred CcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCcccccCCcccc-CCCCCCEEEcc--C----C
Q 045323 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGEMPLQLC-WLNKLQLVDLS--H----N 548 (740)
Q Consensus 477 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~--~----n 548 (740)
++|++|++.++.-.+ ....+.+++... .....+++|+.|.++.+.+++.....+. .+++|+.|+++ + +
T Consensus 338 ~~L~~L~L~~~~~~g----~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~ 413 (594)
T 2p1m_B 338 KDLRELRVFPSEPFV----MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPD 413 (594)
T ss_dssp TTCCEEEEECSCTTC----SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCC
T ss_pred CCCCEEEEecCcccc----cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcc
Confidence 566666663321000 000111111111 1112356677776666666644333333 36677777776 2 1
Q ss_pred cCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCc
Q 045323 549 NLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNK 628 (740)
Q Consensus 549 ~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~ 628 (740)
.+++ .|. . .. +. ..+..+++|+.|++++ .
T Consensus 414 ~l~~-~~~--------------------~---~~---~~-----------------------~l~~~~~~L~~L~L~~-~ 442 (594)
T 2p1m_B 414 YLTL-EPL--------------------D---IG---FG-----------------------AIVEHCKDLRRLSLSG-L 442 (594)
T ss_dssp TTTC-CCT--------------------H---HH---HH-----------------------HHHHHCTTCCEEECCS-S
T ss_pred cccC-Cch--------------------h---hH---HH-----------------------HHHhhCCCccEEeecC-c
Confidence 2210 000 0 00 00 0123456899999987 6
Q ss_pred ccccChhhhhc-CCCCcEEECcCCcCcccCCccc-cCCCCCCEEeCCCCccCccCCc-ccccCCcCceeeccCcccccCC
Q 045323 629 LIGEIPLQIGE-LSRIHTLNLSHNNLTGESPVTF-SHMKQVESLDLSYNNLNGKIPP-RLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 629 l~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~~~-~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|++|+|++|++++..+. ....+++|+.|++++|+++...
T Consensus 443 l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 522 (594)
T 2p1m_B 443 LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGA 522 (594)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHH
T ss_pred ccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHH
Confidence 76666666665 8999999999999987655555 6689999999999999754443 4445889999999999884332
Q ss_pred CCcc-cCCCCccccccccC
Q 045323 706 PDRV-AQFGTFEEDSYEGN 723 (740)
Q Consensus 706 ~~~~-~~~~~l~~l~l~~N 723 (740)
...+ ..++.+....+.++
T Consensus 523 ~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 523 CKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp HHHHHHHCTTEEEEEECSS
T ss_pred HHHHHHhCCCCEEEEecCC
Confidence 2222 34466655455544
No 73
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.91 E-value=1.5e-22 Score=223.74 Aligned_cols=258 Identities=24% Similarity=0.281 Sum_probs=208.9
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.+++|++++|.++ .+|..+. ++|+.|++++|.+.. +|. .+++|++|++++|.++. +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5788888888887 4454444 799999999999884 444 46899999999999984 554 77999999999
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcE
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRY 518 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~ 518 (740)
+|.++.. |. .+++|+.|++++|+++. +|. .+++|+.|++++|++++ +|. ..++|+.
T Consensus 110 ~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~--~l~~L~~L~Ls~N~l~~--------------l~~---~~~~L~~ 165 (622)
T 3g06_A 110 SNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPV--LPPGLQELSVSDNQLAS--------------LPA---LPSELCK 165 (622)
T ss_dssp SCCCCCC-CC---CCTTCCEEECCSSCCSC-CCC--CCTTCCEEECCSSCCSC--------------CCC---CCTTCCE
T ss_pred CCcCCCC-CC---CCCCcCEEECCCCCCCc-CCC--CCCCCCEEECcCCcCCC--------------cCC---ccCCCCE
Confidence 9999854 33 67899999999999985 333 25899999999998863 232 3478999
Q ss_pred EecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccce
Q 045323 519 LILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKY 598 (740)
Q Consensus 519 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~ 598 (740)
|++++|.++. +| ..+++|+.|++++|.+.+ +|.
T Consensus 166 L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~------------------------------------------ 198 (622)
T 3g06_A 166 LWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT------------------------------------------ 198 (622)
T ss_dssp EECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC------------------------------------------
T ss_pred EECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC------------------------------------------
Confidence 9999999985 44 457899999999999863 221
Q ss_pred eeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 599 LTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
.+++|+.|++++|.+. .+|. .+++|++|+|++|++++ +| ..+++|+.|+|++|+++
T Consensus 199 ----------------~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~ 254 (622)
T 3g06_A 199 ----------------LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT 254 (622)
T ss_dssp ----------------CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred ----------------ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC
Confidence 1247999999999998 5554 35899999999999995 55 45689999999999999
Q ss_pred ccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 679 GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 679 ~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
.+|. .+++|+.|++++|+++ .+|..+..+++|+.|++++||+..
T Consensus 255 -~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~ 298 (622)
T 3g06_A 255 -SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSE 298 (622)
T ss_dssp -CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred -cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCC
Confidence 5665 5688999999999999 457778999999999999999864
No 74
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=2.4e-25 Score=227.75 Aligned_cols=248 Identities=23% Similarity=0.284 Sum_probs=158.1
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCccee-cCCcCCC-------CCCCCceEeCCCcccccCCCcCC--CC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIG-DIPKTLS-------NCSALQGLYISDNNISGNIPTRL--GN 428 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~l~-------~~~~L~~L~l~~n~i~~~~~~~~--~~ 428 (740)
+|+++++++|.+ ..|..+... |+.|++++|.+.. ..+..+. .+++|++|++++|.+++..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 466666666666 334333322 6666666666632 3333222 45677777777777766666554 66
Q ss_pred CCCCCEEeCCCCcCcCCchhhhcCC-----CCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCC
Q 045323 429 LSFLDAIMMPNNRLEGPIPSAFCQL-----RHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLN 503 (740)
Q Consensus 429 l~~L~~L~l~~n~~~~~~~~~l~~l-----~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~ 503 (740)
+++|++|++++|.+++. |..+..+ ++|++|++++|++.+.
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~---------------------------------- 164 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNF---------------------------------- 164 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCC----------------------------------
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccc----------------------------------
Confidence 77777777777777655 5555444 6666666666655522
Q ss_pred CCCCcccCCCCCCcEEecccCccccc--CCccc--cCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchh
Q 045323 504 SNIPDWMNRLPQLRYLILANNGLEGE--MPLQL--CWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQI 579 (740)
Q Consensus 504 ~~~~~~~~~~~~L~~L~ls~n~l~~~--~~~~~--~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~ 579 (740)
.+..++.+++|++|++++|++.+. .+..+ ..+++|+.|++++|.+.+. +...
T Consensus 165 --~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~--------------------- 220 (312)
T 1wwl_A 165 --SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-SGVC--------------------- 220 (312)
T ss_dssp --CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-HHHH---------------------
T ss_pred --hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-HHHH---------------------
Confidence 234556677777777777776543 12223 6677888888888776521 1000
Q ss_pred hccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccCh-hhhhcCCCCcEEECcCCcCcccCC
Q 045323 580 LYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIP-LQIGELSRIHTLNLSHNNLTGESP 658 (740)
Q Consensus 580 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~ 658 (740)
...+..+++|+.|++++|++.+..| ..+..+++|++|+|++|+++ .+|
T Consensus 221 ------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 221 ------------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp ------------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred ------------------------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 0001234578888888888876654 34556788889999998888 666
Q ss_pred ccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 659 VTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 659 ~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
..+. ++|++|+|++|++++. |. +..+++|+.|++++|++++.
T Consensus 270 ~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 270 KGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp SSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred hhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 6665 7889999999998855 55 88888999999999988753
No 75
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.90 E-value=1.1e-26 Score=261.45 Aligned_cols=441 Identities=14% Similarity=0.090 Sum_probs=257.0
Q ss_pred CCCccccceEecCCCCceEEEECCCCCCCCCCCccccccccccccccceeeCCCCCCCCCcEEeCCCCCCcCc----ccc
Q 045323 26 NHCCQWACVECNTTTGKVISLDLDGTRKLGDGEGYLNASLFTSFQQLELLDLSILNFKNLEYFNMDFCTAFSN----SFL 101 (740)
Q Consensus 26 ~~~c~~~~~~c~~~~~~v~~ldl~~~~~~~~~~~~l~~~~f~~~~~L~~Ldls~~~l~~L~~L~l~~~~~~~~----~~~ 101 (740)
.-|++|.++.. .....+++..... ..+...+.++++|++|+++++.. +....+. ...+.+ .+.
T Consensus 32 ~vck~W~~~~~----~~~~~l~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~--~~~~~l~-~~~~~~~~~~~l~ 98 (594)
T 2p1m_B 32 LVCKSWYEIER----WCRRKVFIGNCYA------VSPATVIRRFPKVRSVELKGKPH--FADFNLV-PDGWGGYVYPWIE 98 (594)
T ss_dssp TSCHHHHHHHH----HHCCEEEESSTTS------SCHHHHHHHCTTCCEEEEECSCG--GGGGTCS-CTTSCCBCHHHHH
T ss_pred HHHHHHHHhhh----hhceEEeeccccc------cCHHHHHhhCCCceEEeccCCCc--hhhcccc-cccccchhhHHHH
Confidence 56777888721 2334555554322 22345677888899998887421 1111110 001111 112
Q ss_pred hhcccCCCCCEEECCCCCCCCccChhhhc-CCCCCCEEEccCC-ccccc-ccccCcCCCCCCEEEcCCCCCCCCCCc---
Q 045323 102 QMSELMASLKYLSLSNSYLNGTILDQGLC-ELVYLQEVNIDRN-NLSGS-LPWCLANLTYLRLLDVSFNQLTENISS--- 175 (740)
Q Consensus 102 ~~l~~l~~L~~L~Ls~n~~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~i~~--- 175 (740)
.....+++|++|++++|.+++..+. .+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+++..+.
T Consensus 99 ~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~ 177 (594)
T 2p1m_B 99 AMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLS 177 (594)
T ss_dssp HHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred HHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence 2234567777777777776543332 333 5677777777777 34322 333344677777777777765542221
Q ss_pred cccCCCCCCCEEeccCCcccccCCccc----cccCCCccEEeCCCccccccccCCCCCCccccEEEecCCCCC------C
Q 045323 176 SPLMNLTYIEELWLSNNHFQISISLEP----FFNHSKLKFFDGDIYAEIETSHSSLTPKFQLTSISLFGHGDS------G 245 (740)
Q Consensus 176 ~~l~~l~~L~~L~l~~n~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~ 245 (740)
.....+++|++|++++|. +.+.... ..++++|+.|++..+.........+..+++|+.|.+..+... .
T Consensus 178 ~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 255 (594)
T 2p1m_B 178 HFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255 (594)
T ss_dssp GSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH
T ss_pred HHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH
Confidence 022356677777777765 1122121 234577777777664322221122233457777776554321 0
Q ss_pred CCChhhcCCCCCCEE-EcCCCCCCCCCChhHHhcCCCCCEEEccCCcccccC-CCCCCCCCCCCEEEccCCcccccCchh
Q 045323 246 IFPKFLYHQHDLEYV-DLSHLNLTREFPNWLLEKNKKLKRLSLVNISLFGPF-PLPIHCHKNLRVLDVSNNKLQGHIPIE 323 (740)
Q Consensus 246 ~~~~~l~~l~~L~~L-~L~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~-~~~l~~~~~L~~L~l~~~~l~~~~~~~ 323 (740)
.++..+.++++|+.| .+.+... +.++.. ...+++|++|++++|.+.... ...+..+++|++|++++| +.+.....
T Consensus 256 ~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~-~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~ 332 (594)
T 2p1m_B 256 GLSVALSGCKELRCLSGFWDAVP-AYLPAV-YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEV 332 (594)
T ss_dssp HHHHHHHTCTTCCEEECCBTCCG-GGGGGG-HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHH
T ss_pred HHHHHHhcCCCcccccCCcccch-hhHHHH-HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHH
Confidence 123456778888888 3443322 233332 346788888888888754322 223457788888988887 44333344
Q ss_pred hhhcCCCCcEEeccCC---------cccccCCCCccCcCccccCCccEEEccCCCCCCcCccccc-CCCCCCeeecC--C
Q 045323 324 IGEVLPNLVVLNVATN---------AFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEF-NLTKLKRLNLD--G 391 (740)
Q Consensus 324 ~~~~l~~L~~L~l~~n---------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~--~ 391 (740)
+...+++|++|++.++ .+++.....+.. .+++|++|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~----~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSM----GCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHH----HCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHH----hchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 4445788999888442 333221111111 245889998888888765444444 57889999988 3
Q ss_pred ----Ccceec-----CCcCCCCCCCCceEeCCCcccccCCCcCCCC-CCCCCEEeCCCCcCcCCchhhh-cCCCCCCEEE
Q 045323 392 ----NHFIGD-----IPKTLSNCSALQGLYISDNNISGNIPTRLGN-LSFLDAIMMPNNRLEGPIPSAF-CQLRHLEILD 460 (740)
Q Consensus 392 ----n~~~~~-----~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~L~ 460 (740)
+.++.. ++..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++.....+ .++++|++|+
T Consensus 409 ~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~ 487 (594)
T 2p1m_B 409 PKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487 (594)
T ss_dssp TTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEE
T ss_pred CCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEE
Confidence 333311 111245678899999977 555443334444 7889999999998876555555 6789999999
Q ss_pred CCCCcCcccCC--CCCCCCcccEEEcCCCccc
Q 045323 461 LSRNNISGSLP--SCSSPFNIRRVHLSKNMLQ 490 (740)
Q Consensus 461 l~~n~~~~~~~--~~~~~~~L~~L~l~~n~i~ 490 (740)
+++|.+++... ....+++|+.|++++|+++
T Consensus 488 L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 488 IRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp EESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred CcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999854322 1223789999999999874
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=3.8e-22 Score=200.43 Aligned_cols=86 Identities=23% Similarity=0.240 Sum_probs=41.1
Q ss_pred CccEEEcccCcccccChhhhhcCCCCc----EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCce
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIH----TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAV 693 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~----~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~ 693 (740)
+|+.|++++|++.+..+..+..+++|+ +|++++|++++..+..+.. .+|+.|++++|++++..+..+..+++|+.
T Consensus 150 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 228 (276)
T 2z62_A 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQK 228 (276)
T ss_dssp TCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCE
T ss_pred CCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccE
Confidence 344444444444433333444443333 5555555555444444332 24555555555555444444455555555
Q ss_pred eeccCcccccC
Q 045323 694 FSVAFNNLSGK 704 (740)
Q Consensus 694 L~ls~N~l~~~ 704 (740)
|++++|++.+.
T Consensus 229 L~l~~N~~~c~ 239 (276)
T 2z62_A 229 IWLHTNPWDCS 239 (276)
T ss_dssp EECCSSCBCCC
T ss_pred EEccCCccccc
Confidence 55555555543
No 77
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.6e-22 Score=196.50 Aligned_cols=111 Identities=22% Similarity=0.308 Sum_probs=61.7
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..+..+..+++|+.|+++
T Consensus 84 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 163 (251)
T 3m19_A 84 ELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLS 163 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECC
Confidence 45555555555554444445555555555555555554444455555555555555555554444455555555555555
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~ 728 (740)
+|++++.++..+..+++|+.+++++||+.|+
T Consensus 164 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 164 TNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 5555555555555555555555555555555
No 78
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.88 E-value=2.9e-21 Score=193.05 Aligned_cols=117 Identities=25% Similarity=0.263 Sum_probs=77.1
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhH
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 587 (740)
..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 103 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---------------------------- 154 (270)
T 2o6q_A 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD---------------------------- 154 (270)
T ss_dssp TTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT----------------------------
T ss_pred hHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHcc----------------------------
Confidence 3456677777777777777766666677777777777777776533222222
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|
T Consensus 155 ---------------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L 207 (270)
T 2o6q_A 155 ---------------------------KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207 (270)
T ss_dssp ---------------------------TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred ---------------------------CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCC
Confidence 23366777777777765555556667777777777777776666666667777
Q ss_pred CEEeCCCCccCc
Q 045323 668 ESLDLSYNNLNG 679 (740)
Q Consensus 668 ~~L~Ls~n~l~~ 679 (740)
+.|+|++|++..
T Consensus 208 ~~L~l~~N~~~c 219 (270)
T 2o6q_A 208 KMLQLQENPWDC 219 (270)
T ss_dssp CEEECCSSCBCC
T ss_pred CEEEecCCCeeC
Confidence 777777777653
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.88 E-value=1.1e-21 Score=196.19 Aligned_cols=199 Identities=21% Similarity=0.208 Sum_probs=122.4
Q ss_pred CEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCC
Q 045323 433 DAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR 512 (740)
Q Consensus 433 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~ 512 (740)
..+++..+.+.+. ..+..+++|+.|++++|.+. .++.+..+++|+.|++++|.+++ + ..+..
T Consensus 22 ~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~-~~~~l~~l~~L~~L~l~~n~l~~--------------~-~~l~~ 83 (272)
T 3rfs_A 22 IKANLKKKSVTDA--VTQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYLALGGNKLHD--------------I-SALKE 83 (272)
T ss_dssp HHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCC-CCTTGGGCTTCCEEECTTSCCCC--------------C-GGGTT
T ss_pred HHHHhcCcccccc--cccccccceeeeeeCCCCcc-cccccccCCCCcEEECCCCCCCC--------------c-hhhcC
Confidence 3444444444432 22446778888888888876 44455556777777777766542 1 24556
Q ss_pred CCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..+.
T Consensus 84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------------- 130 (272)
T 3rfs_A 84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFD--------------------------------- 130 (272)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT---------------------------------
T ss_pred CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhc---------------------------------
Confidence 66777777777776655555566667777777777766543332222
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|+.|++
T Consensus 131 ----------------------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 188 (272)
T 3rfs_A 131 ----------------------KLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL 188 (272)
T ss_dssp ----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------cCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence 2236666666666666555555566666666666666666655555666666666666
Q ss_pred CCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 673 SYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 673 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
++|++++..|..+..+++|+.|++++|++.+.
T Consensus 189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCCcCCccCHHHHhCCcCCCEEEccCCCcccc
Confidence 66666665555566666666666666666543
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=3.5e-21 Score=193.96 Aligned_cols=203 Identities=23% Similarity=0.175 Sum_probs=145.7
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..++++++++++++.++ .+|..+. +.++.|++++|.++...+..|.++++|++|++++|.+++..+ ...+++|+.|
T Consensus 7 ~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 82 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTL 82 (290)
T ss_dssp ECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEE
T ss_pred cccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC-CCCCCcCCEE
Confidence 44566777777777666 3444332 567777777777776667777777888888888887774333 3456777777
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
++++|+++ .+|..+..+++|++|++++|++++..+..|..+++|+.|++++|.+.+..+..|.
T Consensus 83 ~Ls~N~l~--------------~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~--- 145 (290)
T 1p9a_G 83 DLSHNQLQ--------------SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLT--- 145 (290)
T ss_dssp ECCSSCCS--------------SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTT---
T ss_pred ECCCCcCC--------------cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcc---
Confidence 77777665 4566677788888888888888866667788888888888888888744333222
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
.+++|+.|++++|++++..+..|..+++
T Consensus 146 ----------------------------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 173 (290)
T 1p9a_G 146 ----------------------------------------------------PTPKLEKLSLANNNLTELPAGLLNGLEN 173 (290)
T ss_dssp ----------------------------------------------------TCTTCCEEECTTSCCSCCCTTTTTTCTT
T ss_pred ----------------------------------------------------cccCCCEEECCCCcCCccCHHHhcCcCC
Confidence 2347888888888887655566777888
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
|++|+|++|+++ .+|..+...++|+.|+|++|++..
T Consensus 174 L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 174 LDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 888888888888 566666677788888888888763
No 81
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2.5e-21 Score=193.62 Aligned_cols=210 Identities=20% Similarity=0.252 Sum_probs=151.8
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+
T Consensus 38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~-------------- 99 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-------------- 99 (272)
T ss_dssp HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCC--------------
T ss_pred ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCc--------------
Confidence 3445666666666655521 2345555566666665555532 244555555555555554442
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+.
T Consensus 100 ----------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--- 154 (272)
T 3rfs_A 100 ----------------------LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD--- 154 (272)
T ss_dssp ----------------------CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT---
T ss_pred ----------------------cChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhc---
Confidence 2234466778888888888888866666778888888888888888754443322
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
.+++|+.|++++|++++..+..|..+++
T Consensus 155 ----------------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 182 (272)
T 3rfs_A 155 ----------------------------------------------------KLTNLTELDLSYNQLQSLPEGVFDKLTQ 182 (272)
T ss_dssp ----------------------------------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred ----------------------------------------------------cCccCCEEECCCCCcCccCHHHhcCCcc
Confidence 3348888999999998777777889999
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCC
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGT 714 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 714 (740)
|++|+|++|++++..+..|..+++|+.|++++|++.+. ++.|+.++++.|.++|.+|..++.++.
T Consensus 183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 183 LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred CCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 99999999999988888899999999999999998854 457999999999999999987766543
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.9e-22 Score=210.88 Aligned_cols=105 Identities=15% Similarity=0.164 Sum_probs=54.9
Q ss_pred EEccCCCCCCcCcccccCCCCCCeeecCCCcceecCC----cCCCCCC-CCceEeCCCcccccCCCcCCCCC-----CCC
Q 045323 363 LVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIP----KTLSNCS-ALQGLYISDNNISGNIPTRLGNL-----SFL 432 (740)
Q Consensus 363 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~~~-~L~~L~l~~n~i~~~~~~~~~~l-----~~L 432 (740)
++++.|.+++..+..+...++|++|++++|.+.+..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3455555555444444444446666666666554433 3444455 56666666666554444433332 556
Q ss_pred CEEeCCCCcCcCCchhh----hcCC-CCCCEEECCCCcCc
Q 045323 433 DAIMMPNNRLEGPIPSA----FCQL-RHLEILDLSRNNIS 467 (740)
Q Consensus 433 ~~L~l~~n~~~~~~~~~----l~~l-~~L~~L~l~~n~~~ 467 (740)
++|++++|.+++..+.. +..+ ++|++|++++|.+.
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~ 122 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFS 122 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCC
Confidence 66666666655444442 2233 56666666666654
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.85 E-value=1.5e-22 Score=211.63 Aligned_cols=262 Identities=18% Similarity=0.173 Sum_probs=192.4
Q ss_pred eeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCC----cCCCCCC-CCCEEeCCCCcCcCCchhhhcCC-----CC
Q 045323 386 RLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIP----TRLGNLS-FLDAIMMPNNRLEGPIPSAFCQL-----RH 455 (740)
Q Consensus 386 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l-----~~ 455 (740)
.+++++|.+.+.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 35788888888777766666779999999999987665 6777888 89999999999998777777664 99
Q ss_pred CCEEECCCCcCcccCCC-----CCCC-CcccEEEcCCCcccCcCccccCCCcCCCCCCcccCC-CCCCcEEecccCcccc
Q 045323 456 LEILDLSRNNISGSLPS-----CSSP-FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNR-LPQLRYLILANNGLEG 528 (740)
Q Consensus 456 L~~L~l~~n~~~~~~~~-----~~~~-~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~-~~~L~~L~ls~n~l~~ 528 (740)
|++|++++|.+.+..+. +..+ ++|+.|++++|.+++..... +...+.. .++|++|++++|.+++
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~---------l~~~l~~~~~~L~~L~Ls~N~l~~ 152 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSE---------FKQAFSNLPASITSLNLRGNDLGI 152 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH---------HHHHHTTSCTTCCEEECTTSCGGG
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHH---------HHHHHHhCCCceeEEEccCCcCCH
Confidence 99999999998865543 2233 78999999999886432211 1122444 3689999999999885
Q ss_pred cCC----ccccCCC-CCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeee
Q 045323 529 EMP----LQLCWLN-KLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFT 603 (740)
Q Consensus 529 ~~~----~~~~~l~-~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~ 603 (740)
... ..+..++ +|+.|++++|.+++..+..+...
T Consensus 153 ~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~------------------------------------------ 190 (362)
T 3goz_A 153 KSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKF------------------------------------------ 190 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH------------------------------------------
T ss_pred HHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHH------------------------------------------
Confidence 433 3345555 99999999998875544333221
Q ss_pred eccccceeecccC-CCccEEEcccCccccc----Chhhhhc-CCCCcEEECcCCcCcccCC----ccccCCCCCCEEeCC
Q 045323 604 TKQRLYTYEVQPL-HSMSGLDLSCNKLIGE----IPLQIGE-LSRIHTLNLSHNNLTGESP----VTFSHMKQVESLDLS 673 (740)
Q Consensus 604 ~~~~~~~~~~~~~-~~L~~L~ls~n~l~~~----~~~~l~~-l~~L~~L~L~~N~l~~~~~----~~l~~l~~L~~L~Ls 673 (740)
+... ++|+.||+++|.+.+. ++..+.. .++|++|+|++|.+++..+ ..+..+++|+.|+|+
T Consensus 191 ---------l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~ 261 (362)
T 3goz_A 191 ---------LASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD 261 (362)
T ss_dssp ---------HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred ---------HHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence 1222 3899999999998864 4455555 4599999999999987554 445677899999999
Q ss_pred CCccCcc-------CCcccccCCcCceeeccCcccccCCCC
Q 045323 674 YNNLNGK-------IPPRLIELNALAVFSVAFNNLSGKTPD 707 (740)
Q Consensus 674 ~n~l~~~-------~~~~l~~l~~L~~L~ls~N~l~~~~~~ 707 (740)
+|.+.+. ++..+..+++|+.||+++|++....+.
T Consensus 262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 9985533 334667788899999999998766443
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=6.5e-21 Score=186.84 Aligned_cols=200 Identities=15% Similarity=0.120 Sum_probs=137.7
Q ss_pred CCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCc-CcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcc
Q 045323 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNN-ISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDW 509 (740)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~ 509 (740)
+|++|++++|.++...+..|.++++|++|++++|+ +.. ..+..
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~------------------------------------i~~~~ 75 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ------------------------------------LESHS 75 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCE------------------------------------ECTTT
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcce------------------------------------eCHhH
Confidence 55555555555554444455555666666665554 431 11234
Q ss_pred cCCCCCCcEEeccc-CcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 510 MNRLPQLRYLILAN-NGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 510 ~~~~~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
|..+++|++|++++ |.++...+..|..+++|+.|++++|++.+ +|. +..+.
T Consensus 76 f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~-------------------------- 127 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY-------------------------- 127 (239)
T ss_dssp EESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC--------------------------
T ss_pred cCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc--------------------------
Confidence 56677788888877 77776666677778888888888887763 332 22211
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccC-cccccChhhhhcCCCCc-EEECcCCcCcccCCccccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCN-KLIGEIPLQIGELSRIH-TLNLSHNNLTGESPVTFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~ 666 (740)
.+..|+.|++++| ++.+..+..|..+++|+ +|++++|+++...+..|.. ++
T Consensus 128 --------------------------~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~ 180 (239)
T 2xwt_C 128 --------------------------STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TK 180 (239)
T ss_dssp --------------------------BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CE
T ss_pred --------------------------ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CC
Confidence 1112338888888 88766677788888999 9999999888555556655 78
Q ss_pred CCEEeCCCCc-cCccCCcccccC-CcCceeeccCcccccCCCCcccCCCCccccccccCC
Q 045323 667 VESLDLSYNN-LNGKIPPRLIEL-NALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 667 L~~L~Ls~n~-l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np 724 (740)
|+.|++++|+ ++...+..+..+ ++|+.|++++|++++.++. .+++|+.|++++++
T Consensus 181 L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp EEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9999999995 887777788888 8899999999998866554 67788888888764
No 85
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=8.8e-22 Score=204.21 Aligned_cols=255 Identities=16% Similarity=0.173 Sum_probs=174.6
Q ss_pred CccEEEccCCCCCCcCcccccCC--CCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccC-CCcCCCCCCCCCEE
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNL--TKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGN-IPTRLGNLSFLDAI 435 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L 435 (740)
.++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777776655 2333444 6677777777776655444 34567777777777766543 45556667777777
Q ss_pred eCCCCcCcCCchhhhcCCCCCCEEECCCC-cCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCC
Q 045323 436 MMPNNRLEGPIPSAFCQLRHLEILDLSRN-NISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLP 514 (740)
Q Consensus 436 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n-~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~ 514 (740)
++++|.+++..+..+..+++|++|++++| .+++. .++..+..++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~-----------------------------------~l~~~~~~~~ 168 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF-----------------------------------ALQTLLSSCS 168 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------------------HHHHHHHHCT
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------------------HHHHHHhcCC
Confidence 77777766566666666777777777766 33310 1234466678
Q ss_pred CCcEEecccC-ccccc-CCccccCCC-CCCEEEccCCc--Cc-CCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 515 QLRYLILANN-GLEGE-MPLQLCWLN-KLQLVDLSHNN--LS-GQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 515 ~L~~L~ls~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
+|++|++++| .+++. .+..+..++ +|+.|++++|. ++ +.+|.
T Consensus 169 ~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~-------------------------------- 216 (336)
T 2ast_B 169 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST-------------------------------- 216 (336)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH--------------------------------
T ss_pred CCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH--------------------------------
Confidence 8888888888 77754 455677788 99999999884 32 11111
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCc-ccccChhhhhcCCCCcEEECcCCc-CcccCCccccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNK-LIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~ 666 (740)
.+..+++|+.|++++|. +++..+..+..+++|++|+|++|. ++......++.+++
T Consensus 217 -----------------------~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~ 273 (336)
T 2ast_B 217 -----------------------LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 273 (336)
T ss_dssp -----------------------HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTT
T ss_pred -----------------------HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCC
Confidence 11235689999999998 676778889999999999999995 44333346788999
Q ss_pred CCEEeCCCCccCccCCcccccC-CcCceeeccCcccccCCCCcccC
Q 045323 667 VESLDLSYNNLNGKIPPRLIEL-NALAVFSVAFNNLSGKTPDRVAQ 711 (740)
Q Consensus 667 L~~L~Ls~n~l~~~~~~~l~~l-~~L~~L~ls~N~l~~~~~~~~~~ 711 (740)
|+.|++++| ++. +.+..+ ..|+.|++++|++++..|..++.
T Consensus 274 L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~~~~ 315 (336)
T 2ast_B 274 LKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPTIGN 315 (336)
T ss_dssp CCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSSCSS
T ss_pred CCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCcccc
Confidence 999999999 432 344444 35888889999999999887654
No 86
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=6e-23 Score=217.06 Aligned_cols=248 Identities=19% Similarity=0.239 Sum_probs=146.3
Q ss_pred ccccCCCCCCeeecCCCcceecC----CcCCCCCCCCceEeCCCcccc---cCCCcCC-------CCCCCCCEEeCCCCc
Q 045323 376 SKEFNLTKLKRLNLDGNHFIGDI----PKTLSNCSALQGLYISDNNIS---GNIPTRL-------GNLSFLDAIMMPNNR 441 (740)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~l~~n~i~---~~~~~~~-------~~l~~L~~L~l~~n~ 441 (740)
..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 44455677777777777766542 234566777777777775433 2333332 566777777777777
Q ss_pred CcC----CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCC----
Q 045323 442 LEG----PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRL---- 513 (740)
Q Consensus 442 ~~~----~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~---- 513 (740)
++. .++..+..+++|++|++++|.+....+. .++..+..+
T Consensus 106 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~--------------------------------~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 106 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGA--------------------------------KIARALQELAVNK 153 (386)
T ss_dssp CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHH--------------------------------HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHH--------------------------------HHHHHHHHHhhhh
Confidence 765 2555666677777777777766421110 011112222
Q ss_pred -----CCCcEEecccCcccc-cCC---ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccch
Q 045323 514 -----PQLRYLILANNGLEG-EMP---LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLP 584 (740)
Q Consensus 514 -----~~L~~L~ls~n~l~~-~~~---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~ 584 (740)
++|++|++++|+++. ..+ ..+..+++|+.|++++|.+.......+
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l-------------------------- 207 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL-------------------------- 207 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH--------------------------
T ss_pred hcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH--------------------------
Confidence 566777777776652 222 245556677777777776541000000
Q ss_pred hhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccc----ccChhhhhcCCCCcEEECcCCcCccc----
Q 045323 585 QLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLI----GEIPLQIGELSRIHTLNLSHNNLTGE---- 656 (740)
Q Consensus 585 ~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~----~~~~~~l~~l~~L~~L~L~~N~l~~~---- 656 (740)
....+..+++|+.|++++|.+. ..+|..+..+++|++|+|++|.+++.
T Consensus 208 ------------------------~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~ 263 (386)
T 2ca6_A 208 ------------------------LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 263 (386)
T ss_dssp ------------------------HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHH
T ss_pred ------------------------HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHH
Confidence 0001223446777777777764 45666677777777777777777754
Q ss_pred CCcccc--CCCCCCEEeCCCCccCc----cCCccc-ccCCcCceeeccCcccccCC
Q 045323 657 SPVTFS--HMKQVESLDLSYNNLNG----KIPPRL-IELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 657 ~~~~l~--~l~~L~~L~Ls~n~l~~----~~~~~l-~~l~~L~~L~ls~N~l~~~~ 705 (740)
++..+. .+++|+.|+|++|++++ .+|..+ .++++|+.|++++|++++..
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 345553 36777777777777775 366655 45677777777777777665
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=2.9e-20 Score=189.30 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=32.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
++|+.|++++|++.+..+ +..+++|++|+|++|++++..+ +..+++|+.|++++|+++
T Consensus 173 ~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp TTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred CCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 356666666666653222 5556666666666666654332 455566666666666665
No 88
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.84 E-value=1.5e-20 Score=180.95 Aligned_cols=158 Identities=22% Similarity=0.296 Sum_probs=132.8
Q ss_pred cEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhccccc
Q 045323 517 RYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNH 596 (740)
Q Consensus 517 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~ 596 (740)
+.++++++.++ .+|..+. ++|+.|++++|.+.+..+..|.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~------------------------------------- 53 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFS------------------------------------- 53 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSST-------------------------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhh-------------------------------------
Confidence 46777777776 4454332 6788888888887644333332
Q ss_pred ceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc
Q 045323 597 KYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN 676 (740)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~ 676 (740)
.+++|+.|++++|++.+..|..|.++++|++|+|++|+++...+..|..+++|+.|+|++|+
T Consensus 54 ------------------~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 115 (220)
T 2v9t_B 54 ------------------PYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANK 115 (220)
T ss_dssp ------------------TCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ------------------CCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCC
Confidence 33478888999999888888999999999999999999997777888999999999999999
Q ss_pred cCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 677 LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 677 l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+++..|..|..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|.+.
T Consensus 116 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l~ 171 (220)
T 2v9t_B 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLK 171 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCccH
Confidence 99888899999999999999999999999988999999999999999999999863
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.5e-20 Score=192.06 Aligned_cols=205 Identities=21% Similarity=0.260 Sum_probs=149.6
Q ss_pred CCCCEEECCCCcCcccCCCC---CCCCcccEEEcCCCcccCcCccccCCCcCCCCCC-cccCCCCCCcEEecccCccccc
Q 045323 454 RHLEILDLSRNNISGSLPSC---SSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIP-DWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 454 ~~L~~L~l~~n~~~~~~~~~---~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~-~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
++|++|++++|.+.+..+.. ..+++|++|++++|.+++..+ .++ ..+..+++|++|++++|.+.+.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~----------~~~~~~~~~~~~L~~L~Ls~n~l~~~ 160 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS----------WLAELQQWLKPGLKVLSIAQAHSPAF 160 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS----------SHHHHHTTBCSCCCEEEEECCSSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh----------hhHHHHhhhccCCCEEEeeCCCcchh
Confidence 44666666666665554443 335666666666665542110 001 2344688999999999999877
Q ss_pred CCccccCCCCCCEEEccCCcCcCC--CCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQ--IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQR 607 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~ 607 (740)
.+..+..+++|++|++++|++.+. ++.
T Consensus 161 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--------------------------------------------------- 189 (310)
T 4glp_A 161 SCEQVRAFPALTSLDLSDNPGLGERGLMA--------------------------------------------------- 189 (310)
T ss_dssp CTTSCCCCTTCCEEECCSCTTCHHHHHHT---------------------------------------------------
T ss_pred hHHHhccCCCCCEEECCCCCCccchhhhH---------------------------------------------------
Confidence 778888999999999999987531 100
Q ss_pred cceeecccCCCccEEEcccCcccccChh----hhhcCCCCcEEECcCCcCcccCCccccCC---CCCCEEeCCCCccCcc
Q 045323 608 LYTYEVQPLHSMSGLDLSCNKLIGEIPL----QIGELSRIHTLNLSHNNLTGESPVTFSHM---KQVESLDLSYNNLNGK 680 (740)
Q Consensus 608 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~----~l~~l~~L~~L~L~~N~l~~~~~~~l~~l---~~L~~L~Ls~n~l~~~ 680 (740)
......+++|+.|++++|+++ .++. .+..+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .
T Consensus 190 --~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~ 265 (310)
T 4glp_A 190 --ALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-Q 265 (310)
T ss_dssp --TSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-S
T ss_pred --HHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-c
Confidence 001134568999999999986 3333 35788999999999999998878777776 69999999999999 6
Q ss_pred CCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCC
Q 045323 681 IPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLC 727 (740)
Q Consensus 681 ~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c 727 (740)
+|..+. ++|+.|++++|++++. |. +..+++|+.|++++||+..
T Consensus 266 lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 266 VPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred hhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 677664 7999999999999976 33 5788999999999998853
No 90
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.83 E-value=1.2e-19 Score=179.16 Aligned_cols=142 Identities=21% Similarity=0.212 Sum_probs=87.3
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhH
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQ 587 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~ 587 (740)
..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~---------------------------- 104 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD---------------------------- 104 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT----------------------------
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhc----------------------------
Confidence 3455566666666666666655555566666666666666666533332222
Q ss_pred HhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCC
Q 045323 588 ILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQV 667 (740)
Q Consensus 588 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L 667 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|+.+++|
T Consensus 105 ---------------------------~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 157 (251)
T 3m19_A 105 ---------------------------HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNL 157 (251)
T ss_dssp ---------------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred ---------------------------ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCC
Confidence 22366666666666665555555666666666666666665555566666666
Q ss_pred CEEeCCCCccCccCCcccccCCcCceeeccCcccccC
Q 045323 668 ESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGK 704 (740)
Q Consensus 668 ~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~ 704 (740)
+.|+|++|++++..+..+..+++|+.|++++|++.+.
T Consensus 158 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 158 QTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp CEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred CEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 6666666666655555666666666666666666554
No 91
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.83 E-value=2.8e-20 Score=189.32 Aligned_cols=237 Identities=16% Similarity=0.238 Sum_probs=181.6
Q ss_pred eEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcc
Q 045323 410 GLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNML 489 (740)
Q Consensus 410 ~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i 489 (740)
.+.+..+.+.+. .....+++|++|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|+.|++++|++
T Consensus 23 ~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l 97 (308)
T 1h6u_A 23 KIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPL 97 (308)
T ss_dssp HHHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCC
T ss_pred HHHhCCCCcCce--ecHHHcCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcC
Confidence 344555555432 2345688999999999999853 3 58899999999999999986554 67799999999999988
Q ss_pred cCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCC
Q 045323 490 QGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDN 569 (740)
Q Consensus 490 ~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~ 569 (740)
++ + ..+..+++|++|++++|.+++. + .+..+++|+.|++++|.+.+..+
T Consensus 98 ~~--------------~-~~~~~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~-------------- 146 (308)
T 1h6u_A 98 KN--------------V-SAIAGLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP-------------- 146 (308)
T ss_dssp SC--------------C-GGGTTCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--------------
T ss_pred CC--------------c-hhhcCCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--------------
Confidence 63 2 3578899999999999999854 3 38899999999999998863221
Q ss_pred CCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECc
Q 045323 570 HDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLS 649 (740)
Q Consensus 570 ~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~ 649 (740)
+..+++|+.|++++|++.+ ++. +..+++|++|+|+
T Consensus 147 -------------------------------------------l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~ 181 (308)
T 1h6u_A 147 -------------------------------------------LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKAD 181 (308)
T ss_dssp -------------------------------------------GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECC
T ss_pred -------------------------------------------ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECC
Confidence 2344589999999999985 443 8899999999999
Q ss_pred CCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCC-----------CCcccc
Q 045323 650 HNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF-----------GTFEED 718 (740)
Q Consensus 650 ~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~-----------~~l~~l 718 (740)
+|++++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|++++........+ ..+...
T Consensus 182 ~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 257 (308)
T 1h6u_A 182 DNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPA 257 (308)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCEECCSEEEEECCCBCTTSCBCCCS
T ss_pred CCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCeeecccEeccceeECCCCCCCCCC
Confidence 999996554 789999999999999999554 38889999999999999987533221111 113345
Q ss_pred ccccCCCCCCcCC
Q 045323 719 SYEGNPFLCGQPL 731 (740)
Q Consensus 719 ~l~~Np~~c~~~l 731 (740)
+++.|.+.|.+.+
T Consensus 258 ~is~~g~y~~~~~ 270 (308)
T 1h6u_A 258 TISDNGTYASPNL 270 (308)
T ss_dssp EEGGGCEEETTEE
T ss_pred ccccCCEEeCCce
Confidence 5666766665543
No 92
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=3.8e-22 Score=210.94 Aligned_cols=247 Identities=16% Similarity=0.184 Sum_probs=171.6
Q ss_pred cCCCCCCCCceEeCCCcccccCC----CcCCCCCCCCCEEeCCCCcCc---CCchhhh-------cCCCCCCEEECCCCc
Q 045323 400 KTLSNCSALQGLYISDNNISGNI----PTRLGNLSFLDAIMMPNNRLE---GPIPSAF-------CQLRHLEILDLSRNN 465 (740)
Q Consensus 400 ~~l~~~~~L~~L~l~~n~i~~~~----~~~~~~l~~L~~L~l~~n~~~---~~~~~~l-------~~l~~L~~L~l~~n~ 465 (740)
..+..+++|++|++++|.+.... +..+..+++|++|++++|.+. +.+|..+ ..+++|++|++++|.
T Consensus 26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 105 (386)
T 2ca6_A 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA 105 (386)
T ss_dssp HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence 34455566777777777665432 233556666666666665332 2223322 455555555555555
Q ss_pred CcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcc----ccCC----
Q 045323 466 ISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQ----LCWL---- 537 (740)
Q Consensus 466 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~----~~~l---- 537 (740)
+.... . ..++..+..+++|++|++++|.++...+.. +..+
T Consensus 106 l~~~~-----------------------~---------~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~ 153 (386)
T 2ca6_A 106 FGPTA-----------------------Q---------EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153 (386)
T ss_dssp CCTTT-----------------------H---------HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHH-----------------------H---------HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhh
Confidence 44110 0 024556778899999999999997543333 3333
Q ss_pred -----CCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceee
Q 045323 538 -----NKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYE 612 (740)
Q Consensus 538 -----~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~ 612 (740)
++|+.|++++|++..... +.+.. .
T Consensus 154 ~~~~~~~L~~L~L~~n~l~~~~~----------------------------~~l~~-----------------------~ 182 (386)
T 2ca6_A 154 KAKNAPPLRSIICGRNRLENGSM----------------------------KEWAK-----------------------T 182 (386)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGH----------------------------HHHHH-----------------------H
T ss_pred hcccCCCCcEEECCCCCCCcHHH----------------------------HHHHH-----------------------H
Confidence 899999999999862111 10000 1
Q ss_pred cccCCCccEEEcccCcccc-----cChhhhhcCCCCcEEECcCCcCc----ccCCccccCCCCCCEEeCCCCccCcc---
Q 045323 613 VQPLHSMSGLDLSCNKLIG-----EIPLQIGELSRIHTLNLSHNNLT----GESPVTFSHMKQVESLDLSYNNLNGK--- 680 (740)
Q Consensus 613 ~~~~~~L~~L~ls~n~l~~-----~~~~~l~~l~~L~~L~L~~N~l~----~~~~~~l~~l~~L~~L~Ls~n~l~~~--- 680 (740)
+..+++|+.|++++|++.. ..+..+..+++|++|+|++|.++ ..+|..+..+++|+.|+|++|++++.
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~ 262 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA 262 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHH
Confidence 2345589999999999873 34447889999999999999996 56788899999999999999999865
Q ss_pred -CCccccc--CCcCceeeccCccccc----CCCCcc-cCCCCccccccccCCCCCCc
Q 045323 681 -IPPRLIE--LNALAVFSVAFNNLSG----KTPDRV-AQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 681 -~~~~l~~--l~~L~~L~ls~N~l~~----~~~~~~-~~~~~l~~l~l~~Np~~c~~ 729 (740)
+|..+.. +++|+.|++++|++++ .+|..+ ..+++|+.|++++|++....
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 5666644 8999999999999998 366655 66899999999999988655
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.1e-20 Score=192.87 Aligned_cols=80 Identities=30% Similarity=0.346 Sum_probs=47.8
Q ss_pred CccEEEcccCcccccChhhhhcC---CCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGEL---SRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l---~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+|+.||+++|++.+..|..+..+ ++|++|+|++|+++ .+|..+. ++|++|+|++|++++. |. +..+++|+.|
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L 299 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNL 299 (310)
T ss_dssp CCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCE
T ss_pred CCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEE
Confidence 45555555555554444444444 46666666666666 4455443 5677777777777643 32 4566677777
Q ss_pred eccCcccc
Q 045323 695 SVAFNNLS 702 (740)
Q Consensus 695 ~ls~N~l~ 702 (740)
++++|+++
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 77777765
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.83 E-value=4.3e-20 Score=177.79 Aligned_cols=117 Identities=19% Similarity=0.254 Sum_probs=101.6
Q ss_pred cCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
.+++|+.|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+..+++|+.|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 34578888888888887777788888999999999999988888888888999999999999988888888888999999
Q ss_pred eccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++++|++++..|..+..+++|+.+++++|||.|+|++
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 171 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL 171 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence 9999999988888888889999999999999999875
No 95
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.82 E-value=2e-20 Score=195.25 Aligned_cols=163 Identities=23% Similarity=0.222 Sum_probs=135.6
Q ss_pred CCCcEEecccCcccccCCcccc-CCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 514 PQLRYLILANNGLEGEMPLQLC-WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 514 ~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
+.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..|..|.
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~--------------------------------- 85 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV--------------------------------- 85 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT---------------------------------
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhcc---------------------------------
Confidence 4578888888888877677676 888999999999988754443333
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|
T Consensus 86 ----------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L 143 (361)
T 2xot_A 86 ----------------------PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYL 143 (361)
T ss_dssp ----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred ----------------------CCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEEC
Confidence 3348899999999998777778999999999999999999888999999999999999
Q ss_pred CCCccCccCCccc---ccCCcCceeeccCcccccCCCCcccCCCC--ccccccccCCCCCCcCC
Q 045323 673 SYNNLNGKIPPRL---IELNALAVFSVAFNNLSGKTPDRVAQFGT--FEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 673 s~n~l~~~~~~~l---~~l~~L~~L~ls~N~l~~~~~~~~~~~~~--l~~l~l~~Np~~c~~~l 731 (740)
++|+++...+..+ ..+++|+.|+|++|++++..+..+..++. ++.|++.+|||.|+|.+
T Consensus 144 ~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l 207 (361)
T 2xot_A 144 SQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL 207 (361)
T ss_dssp CSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred CCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence 9999996554455 56899999999999999888777788877 48899999999999975
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.81 E-value=8.9e-20 Score=178.72 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=41.5
Q ss_pred Ccc-EEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCC-CCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 618 SMS-GLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHM-KQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 618 ~L~-~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l-~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+|+ .|++++|++....+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|+++. +|.. .+++|+.|
T Consensus 156 ~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L 231 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL 231 (239)
T ss_dssp SSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred cceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence 444 4555555554222222333 566666666663 665555566666 666666666666663 3322 34556666
Q ss_pred eccCc
Q 045323 695 SVAFN 699 (740)
Q Consensus 695 ~ls~N 699 (740)
+++++
T Consensus 232 ~l~~~ 236 (239)
T 2xwt_C 232 IARNT 236 (239)
T ss_dssp ECTTC
T ss_pred eccCc
Confidence 66554
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.81 E-value=2.5e-19 Score=173.78 Aligned_cols=156 Identities=19% Similarity=0.256 Sum_probs=129.9
Q ss_pred CcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccc
Q 045323 516 LRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHN 595 (740)
Q Consensus 516 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~ 595 (740)
-+.++.+++.++ .+|..+ .++|+.|++++|.+.+..|..|..
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~----------------------------------- 62 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDS----------------------------------- 62 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-----------------------------------
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhC-----------------------------------
Confidence 456777777776 444433 278888888888887655554433
Q ss_pred cceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCC
Q 045323 596 HKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN 675 (740)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n 675 (740)
+++|+.|++++|++....+..|..+++|++|+|++|++++..+..|..+++|+.|+|++|
T Consensus 63 --------------------l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N 122 (229)
T 3e6j_A 63 --------------------LINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCN 122 (229)
T ss_dssp --------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred --------------------ccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCC
Confidence 337888888888887666667889999999999999999888888899999999999999
Q ss_pred ccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+++ .+|..+..+++|+.|++++|++++..+..+..+++|+.+++++|||.|+|+
T Consensus 123 ~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 123 KLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred ccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 999 788888999999999999999999888888999999999999999999996
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=6.5e-20 Score=190.57 Aligned_cols=226 Identities=22% Similarity=0.215 Sum_probs=126.3
Q ss_pred CCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCC--CCCCCcccE-EEcCCCcccCcCccccCCCcCCCCCC
Q 045323 431 FLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPS--CSSPFNIRR-VHLSKNMLQGPLLGDLSYNRLNSNIP 507 (740)
Q Consensus 431 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~--~~~~~~L~~-L~l~~n~i~~~~~~~l~~~~~~~~~~ 507 (740)
++++|++++|+++.+.+.+|.++++|++|++++|++.+.++. +..++++.+ +.+++|+++ ...+
T Consensus 31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-------------~l~~ 97 (350)
T 4ay9_X 31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-------------YINP 97 (350)
T ss_dssp TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-------------EECT
T ss_pred CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-------------ccCc
Confidence 444444444444433333444555555555555544332221 122333332 222223332 2334
Q ss_pred cccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCC-cCcCCCCccccccccccccCCCCccCCCchhhccchhh
Q 045323 508 DWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHN-NLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQL 586 (740)
Q Consensus 508 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L 586 (740)
..|..+++|++|++++|++....+..+....++..+++.++ .+....+..|..+
T Consensus 98 ~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~------------------------- 152 (350)
T 4ay9_X 98 EAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL------------------------- 152 (350)
T ss_dssp TSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS-------------------------
T ss_pred hhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhc-------------------------
Confidence 55667777777777777777555555555566677777553 3332111111111
Q ss_pred HHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcC-CcCcccCCccccCCC
Q 045323 587 QILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMK 665 (740)
Q Consensus 587 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~ 665 (740)
...++.|++++|+++. +|.......+|++|++++ |.++...++.|+.++
T Consensus 153 -----------------------------~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~ 202 (350)
T 4ay9_X 153 -----------------------------SFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGAS 202 (350)
T ss_dssp -----------------------------BSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEE
T ss_pred -----------------------------chhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCc
Confidence 1257778888888874 443444556788888874 667756666778888
Q ss_pred CCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCc
Q 045323 666 QVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 666 ~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~ 729 (740)
+|+.|||++|+|+...+..+.++++|+.+++ +.+. ..|. +..+++|+.+++. ||+.|.|
T Consensus 203 ~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~-~lP~-l~~l~~L~~l~l~-~~~~c~~ 261 (350)
T 4ay9_X 203 GPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT-LEKLVALMEASLT-YPSHCCA 261 (350)
T ss_dssp CCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCC-CCCC-TTTCCSCCEEECS-CHHHHHH
T ss_pred ccchhhcCCCCcCccChhhhccchHhhhccC--CCcC-cCCC-chhCcChhhCcCC-CCccccc
Confidence 8888888888888555555555555444443 2333 3454 5677888888874 6677744
No 99
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.79 E-value=4.7e-20 Score=191.13 Aligned_cols=247 Identities=18% Similarity=0.198 Sum_probs=172.5
Q ss_pred CCceEeCCCcccccCCCcCCCCC--CCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCccc-CCC-CCCCCcccEE
Q 045323 407 ALQGLYISDNNISGNIPTRLGNL--SFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGS-LPS-CSSPFNIRRV 482 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~-~~~~~~L~~L 482 (740)
.++.++++++.+. +..+..+ +.++.+++.+|.+.+..+. +..+++|++|++++|.+.+. ++. +..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3677788777665 2334444 6777888888777765554 44677788888887776543 332 3346777777
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccC-ccccc-CCccccCCCCCCEEEccCC-cCcCC-CCccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN-GLEGE-MPLQLCWLNKLQLVDLSHN-NLSGQ-IPHCL 558 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~l~~n-~~~~~-~p~~~ 558 (740)
++++|.+++ ..+..+..+++|++|++++| .+++. .+..+..+++|+.|++++| .+++. ++
T Consensus 124 ~L~~~~l~~-------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~--- 187 (336)
T 2ast_B 124 SLEGLRLSD-------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ--- 187 (336)
T ss_dssp ECTTCBCCH-------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH---
T ss_pred eCcCcccCH-------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH---
Confidence 777776542 33455666777888888777 56542 4445666777888888777 65421 11
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCC-CccEEEcccC--ccc-ccCh
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLH-SMSGLDLSCN--KLI-GEIP 634 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~~L~ls~n--~l~-~~~~ 634 (740)
..+..++ +|+.|++++| .++ +.+|
T Consensus 188 ----------------------------------------------------~~~~~l~~~L~~L~l~~~~~~~~~~~l~ 215 (336)
T 2ast_B 188 ----------------------------------------------------VAVAHVSETITQLNLSGYRKNLQKSDLS 215 (336)
T ss_dssp ----------------------------------------------------HHHHHSCTTCCEEECCSCGGGSCHHHHH
T ss_pred ----------------------------------------------------HHHHhcccCCCEEEeCCCcccCCHHHHH
Confidence 1123456 8999999999 454 4567
Q ss_pred hhhhcCCCCcEEECcCCc-CcccCCccccCCCCCCEEeCCCCc-cCccCCcccccCCcCceeeccCcccccCCCCcccCC
Q 045323 635 LQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQVESLDLSYNN-LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQF 712 (740)
Q Consensus 635 ~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~ 712 (740)
..+..+++|++|+|++|. +++..+..+..+++|+.|++++|. +.......+..+++|+.|++++| ..++.+..+
T Consensus 216 ~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~----i~~~~~~~l 291 (336)
T 2ast_B 216 TLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI----VPDGTLQLL 291 (336)
T ss_dssp HHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS----SCTTCHHHH
T ss_pred HHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc----cCHHHHHHH
Confidence 778899999999999999 787888889999999999999995 33222236788999999999999 334445555
Q ss_pred -CCccccccccCCCCCCc
Q 045323 713 -GTFEEDSYEGNPFLCGQ 729 (740)
Q Consensus 713 -~~l~~l~l~~Np~~c~~ 729 (740)
.++..|++++|.+.-..
T Consensus 292 ~~~l~~L~l~~n~l~~~~ 309 (336)
T 2ast_B 292 KEALPHLQINCSHFTTIA 309 (336)
T ss_dssp HHHSTTSEESCCCSCCTT
T ss_pred HhhCcceEEecccCcccc
Confidence 45888999888776433
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=1.3e-18 Score=189.83 Aligned_cols=74 Identities=24% Similarity=0.396 Sum_probs=42.8
Q ss_pred CCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
+++.|++++|.+++ +|..+ .++|+.|++++|.++ .+| ..+++|++|++++|.+++ +|.+. .+|+.|++++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~--~~L~~L~Ls~ 129 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELP--ASLKHLDVDN 129 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEECCS
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhh--cCCCEEECCC
Confidence 67777777777774 44433 256777777777766 334 345666666666666664 33311 1455555555
Q ss_pred Cccc
Q 045323 487 NMLQ 490 (740)
Q Consensus 487 n~i~ 490 (740)
|+++
T Consensus 130 N~l~ 133 (571)
T 3cvr_A 130 NQLT 133 (571)
T ss_dssp SCCS
T ss_pred CcCC
Confidence 5443
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=6.8e-18 Score=161.36 Aligned_cols=151 Identities=23% Similarity=0.140 Sum_probs=99.3
Q ss_pred CCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhc
Q 045323 513 LPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTN 592 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~ 592 (740)
.++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|.
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------------------------- 73 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN--------------------------------- 73 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT---------------------------------
T ss_pred CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcC---------------------------------
Confidence 35677777777777755555667777777777777776633332222
Q ss_pred ccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeC
Q 045323 593 YHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDL 672 (740)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~L 672 (740)
.+++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus 74 ----------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 131 (208)
T 2o6s_A 74 ----------------------KLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL 131 (208)
T ss_dssp ----------------------TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred ----------------------CCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEEC
Confidence 2336777777777777555555677777777777777777666666677777777777
Q ss_pred CCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 673 SYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 673 s~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++|++++..+..+..+++|+.|++++|++.+.. ++++++++.+|.+
T Consensus 132 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~L~~~~n~~ 177 (208)
T 2o6s_A 132 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKH 177 (208)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT-------TTTHHHHHHHHHC
T ss_pred CCCccceeCHHHhccCCCccEEEecCCCeecCC-------CCHHHHHHHHHhC
Confidence 777777655555677777777777777665432 3445555444433
No 102
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.76 E-value=1.7e-17 Score=158.56 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=128.2
Q ss_pred CcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCc
Q 045323 477 FNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPH 556 (740)
Q Consensus 477 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~ 556 (740)
+++++|++++|.+++ ..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|.+.+..+.
T Consensus 28 ~~l~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 94 (208)
T 2o6s_A 28 AQTTYLDLETNSLKS-------------LPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG 94 (208)
T ss_dssp TTCSEEECCSSCCCC-------------CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCcEEEcCCCccCc-------------CChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence 355566665555441 2334567788899999999988866666678889999999999988744333
Q ss_pred cccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhh
Q 045323 557 CLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQ 636 (740)
Q Consensus 557 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~ 636 (740)
.+. .+++|+.|++++|++.+..+..
T Consensus 95 ~~~-------------------------------------------------------~l~~L~~L~L~~N~l~~~~~~~ 119 (208)
T 2o6s_A 95 VFD-------------------------------------------------------KLTQLKELALNTNQLQSLPDGV 119 (208)
T ss_dssp TTT-------------------------------------------------------TCTTCCEEECCSSCCCCCCTTT
T ss_pred Hhc-------------------------------------------------------CccCCCEEEcCCCcCcccCHhH
Confidence 222 3448899999999998777777
Q ss_pred hhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCC
Q 045323 637 IGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGT 714 (740)
Q Consensus 637 l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~ 714 (740)
|..+++|++|+|++|++++..+..|..+++|+.|++++|++.+ .++.|+.|+++.|+++|.+|..++.++.
T Consensus 120 ~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~~ 190 (208)
T 2o6s_A 120 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVAP 190 (208)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCccccC
Confidence 8999999999999999998888888999999999999998874 3457999999999999999988776643
No 103
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.8e-18 Score=157.77 Aligned_cols=115 Identities=23% Similarity=0.363 Sum_probs=108.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++++.|++++|++. .+|..|..+++|++|+|++|++++..+..|..+++|++|+|++|++++..|..|..+++|+.|++
T Consensus 31 ~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L 109 (193)
T 2wfh_A 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSL 109 (193)
T ss_dssp TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEEC
T ss_pred CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEEC
Confidence 37899999999998 77889999999999999999999988899999999999999999999888889999999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
++|++++..+..+..+++|+.+++++|||.|+|.+.
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~ 145 (193)
T 2wfh_A 110 HGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQ 145 (193)
T ss_dssp CSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGGGH
T ss_pred CCCCCCeeChhhhhcCccccEEEeCCCCeecCCcCH
Confidence 999999998888999999999999999999999853
No 104
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=9.8e-18 Score=157.59 Aligned_cols=114 Identities=24% Similarity=0.335 Sum_probs=107.1
Q ss_pred CccEEEcccCcccccChh-hhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPL-QIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~-~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+++.|++++|++.+..+. .|..+++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+..+++|+.|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 788999999999866664 4899999999999999999999999999999999999999999988888999999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
++|++++..|..++.+++|+++++++|||.|+|++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l 144 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence 99999999999999999999999999999999985
No 105
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.73 E-value=3e-17 Score=165.32 Aligned_cols=80 Identities=23% Similarity=0.369 Sum_probs=42.8
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+. ..+..+++|++|+|++|++++..+ +..+++|+.|++++|++++ +| .+..+++|+.|+++
T Consensus 135 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~ 208 (291)
T 1h6t_A 135 QLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF 208 (291)
T ss_dssp TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred CCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECc
Confidence 555555555555432 345555555555555555554333 4555555555555555553 22 25555555556666
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|+++.
T Consensus 209 ~n~i~~ 214 (291)
T 1h6t_A 209 SQECLN 214 (291)
T ss_dssp EEEEEC
T ss_pred CCcccC
Confidence 555544
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=3.4e-17 Score=178.59 Aligned_cols=134 Identities=26% Similarity=0.386 Sum_probs=94.6
Q ss_pred CCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECC
Q 045323 383 KLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLS 462 (740)
Q Consensus 383 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~ 462 (740)
+++.|++++|.+.+ +|..+ +++|++|++++|.++ .+| ..+++|+.|++++|.+++ +|. +.+ +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 78888888888875 55444 267888888888888 455 456888888888888886 454 544 88888888
Q ss_pred CCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCE
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQL 542 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 542 (740)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|+.|++++|.+++ +|. +. ++|+.
T Consensus 129 ~N~l~~-lp~--~l~~L~~L~Ls~N~l~~--------------lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~ 184 (571)
T 3cvr_A 129 NNQLTM-LPE--LPALLEYINADNNQLTM--------------LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEA 184 (571)
T ss_dssp SSCCSC-CCC--CCTTCCEEECCSSCCSC--------------CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCE
T ss_pred CCcCCC-CCC--cCccccEEeCCCCccCc--------------CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCE
Confidence 888876 444 56777777777777652 333 35677777777777764 444 44 67777
Q ss_pred EEccCCcCc
Q 045323 543 VDLSHNNLS 551 (740)
Q Consensus 543 L~l~~n~~~ 551 (740)
|++++|.++
T Consensus 185 L~Ls~N~L~ 193 (571)
T 3cvr_A 185 LDVSTNLLE 193 (571)
T ss_dssp EECCSSCCS
T ss_pred EECcCCCCC
Confidence 777777665
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.73 E-value=4.4e-17 Score=156.68 Aligned_cols=87 Identities=21% Similarity=0.239 Sum_probs=55.0
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|++|++++..|..+..+++|+.|+++
T Consensus 82 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 161 (220)
T 2v70_A 82 GVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLL 161 (220)
T ss_dssp TCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEec
Confidence 56666666666665555556666666666666666666666666666666666666666665556666666666666666
Q ss_pred CcccccC
Q 045323 698 FNNLSGK 704 (740)
Q Consensus 698 ~N~l~~~ 704 (740)
+|++.+.
T Consensus 162 ~N~l~c~ 168 (220)
T 2v70_A 162 ANPFNCN 168 (220)
T ss_dssp SCCEECS
T ss_pred CcCCcCC
Confidence 6666543
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.73 E-value=4.2e-17 Score=156.85 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=30.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
+|+.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|++.
T Consensus 105 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 105 SLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 4445555555554444444445555555555555555444444444555555555555443
No 109
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.73 E-value=4.9e-17 Score=168.82 Aligned_cols=170 Identities=21% Similarity=0.160 Sum_probs=93.3
Q ss_pred CEEEccCCcccccCchhhhhcCCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcC-cccccCCCCCC
Q 045323 307 RVLDVSNNKLQGHIPIEIGEVLPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQL-FSKEFNLTKLK 385 (740)
Q Consensus 307 ~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~ 385 (740)
++++.+++.++ .+|..+ .+++++|++++|.++...+..|..+. +|++|++++|.+.+.+ +..|.++++++
T Consensus 12 ~~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~-----~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFG-----DLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCT-----TCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCC-----CCCEEECcCCCCCCccChhHhhcchhhh
Confidence 46777777776 666544 24667777777776644444555544 5666666666664433 23455555555
Q ss_pred e-eecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCC-CcCcCCchhhhcCCC-CCCEEECC
Q 045323 386 R-LNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN-NRLEGPIPSAFCQLR-HLEILDLS 462 (740)
Q Consensus 386 ~-L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~-~L~~L~l~ 462 (740)
+ +.+.+|++....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..|..+. .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 34445566655566666666666666666666644444445555555565543 344433333444432 45555666
Q ss_pred CCcCcccCCCCCCCCcccEEEcC
Q 045323 463 RNNISGSLPSCSSPFNIRRVHLS 485 (740)
Q Consensus 463 ~n~~~~~~~~~~~~~~L~~L~l~ 485 (740)
+|.++...+..+...+|+++++.
T Consensus 163 ~N~i~~i~~~~f~~~~L~~l~l~ 185 (350)
T 4ay9_X 163 KNGIQEIHNSAFNGTQLDELNLS 185 (350)
T ss_dssp SSCCCEECTTSSTTEEEEEEECT
T ss_pred cccccCCChhhccccchhHHhhc
Confidence 66555444443344444444443
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=8.5e-17 Score=177.65 Aligned_cols=123 Identities=19% Similarity=0.290 Sum_probs=70.3
Q ss_pred CCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCC
Q 045323 407 ALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSK 486 (740)
Q Consensus 407 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~ 486 (740)
.+..+.+..+.+.+.. .+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++
T Consensus 22 ~l~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~ 96 (605)
T 1m9s_A 22 ETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDE 96 (605)
T ss_dssp HHHHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCS
T ss_pred HHHHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcC
Confidence 4445556655555332 234567777788887777643 2 46777778888777777764333 44455666666666
Q ss_pred CcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCc
Q 045323 487 NMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLS 551 (740)
Q Consensus 487 n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 551 (740)
|.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.
T Consensus 97 N~l~~--------------l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 97 NKIKD--------------LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp SCCCC--------------CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred CCCCC--------------Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence 55542 11 344555566666665555532 23455555555555555544
No 111
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.70 E-value=1.1e-16 Score=161.14 Aligned_cols=172 Identities=20% Similarity=0.362 Sum_probs=108.4
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... ..+..+++|+.|++++|.+++..+ +..+++|++|++++|.+.+ ++
T Consensus 43 ~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~----------- 106 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS----------- 106 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-----------
T ss_pred hhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-----------
Confidence 3456677777777766633 235566666666666666664433 5566666666666665542 11
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
.+..+++|++|++++|.+.+. ..+..+++|+.|++++|.+.+. ..
T Consensus 107 --------------------------~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~----- 151 (291)
T 1h6t_A 107 --------------------------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TV----- 151 (291)
T ss_dssp --------------------------GGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GG-----
T ss_pred --------------------------hhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hh-----
Confidence 255566777777777776642 3466677777777777766531 11
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
+..+++|+.|++++|++.+..+ +..+++
T Consensus 152 --------------------------------------------------l~~l~~L~~L~L~~N~l~~~~~--l~~l~~ 179 (291)
T 1h6t_A 152 --------------------------------------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTK 179 (291)
T ss_dssp --------------------------------------------------GGGCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred --------------------------------------------------hccCCCCCEEEccCCccccchh--hcCCCc
Confidence 1233467777777777764433 777788
Q ss_pred CcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCc
Q 045323 643 IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
|++|+|++|.+++. + .+..+++|+.|++++|+++.
T Consensus 180 L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence 88888888877743 3 36777788888888887764
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.70 E-value=2.6e-16 Score=152.48 Aligned_cols=85 Identities=22% Similarity=0.210 Sum_probs=44.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++++..+..|..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++++..+..+..+++|+.|+++
T Consensus 89 ~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 89 QLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 4555555555555444444455555555555555555 444445555555555555555554444445555555555555
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|++.+
T Consensus 168 ~N~~~c 173 (229)
T 3e6j_A 168 GNPWDC 173 (229)
T ss_dssp TSCBCT
T ss_pred CCCccC
Confidence 555543
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.69 E-value=1.5e-16 Score=165.82 Aligned_cols=136 Identities=24% Similarity=0.218 Sum_probs=83.9
Q ss_pred CCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 512 RLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 512 ~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.+++|++|++++|++.+..+..|..+++|+.|++++|++.+..+..|.
T Consensus 62 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-------------------------------- 109 (361)
T 2xot_A 62 RLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-------------------------------- 109 (361)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT--------------------------------
T ss_pred cccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhC--------------------------------
Confidence 566666666666666655555666666666777666666533322222
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccc---cCCCCCC
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTF---SHMKQVE 668 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l---~~l~~L~ 668 (740)
.+++|+.|++++|++.+..|..|..+++|++|+|++|++++..+..| ..+++|+
T Consensus 110 -----------------------~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 110 -----------------------DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp -----------------------TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC
T ss_pred -----------------------CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC
Confidence 23366667777777666666667777777777777777775444444 4566777
Q ss_pred EEeCCCCccCccCCcccccCCc--CceeeccCcccc
Q 045323 669 SLDLSYNNLNGKIPPRLIELNA--LAVFSVAFNNLS 702 (740)
Q Consensus 669 ~L~Ls~n~l~~~~~~~l~~l~~--L~~L~ls~N~l~ 702 (740)
.|+|++|+|+...+..+..++. |+.|++++|++.
T Consensus 167 ~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 167 LLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp EEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred EEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 7777777776554455666665 366777777664
No 114
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.68 E-value=2.5e-16 Score=173.86 Aligned_cols=178 Identities=23% Similarity=0.336 Sum_probs=126.8
Q ss_pred CCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEE
Q 045323 403 SNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRV 482 (740)
Q Consensus 403 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L 482 (740)
..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.+ ++.+..+++|+.|
T Consensus 40 ~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~~l~~l~~L~~L 114 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LSSLKDLKKLKSL 114 (605)
T ss_dssp HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CTTSTTCTTCCEE
T ss_pred hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-ChhhccCCCCCEE
Confidence 3455666666666666532 2 45666777777777777665444 6677777777777777763 4555667788888
Q ss_pred EcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccc
Q 045323 483 HLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNIS 562 (740)
Q Consensus 483 ~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~ 562 (740)
++++|.+.+ + ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+..| +
T Consensus 115 ~Ls~N~l~~--------------l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l---- 171 (605)
T 1m9s_A 115 SLEHNGISD--------------I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--L---- 171 (605)
T ss_dssp ECTTSCCCC--------------C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--G----
T ss_pred EecCCCCCC--------------C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--h----
Confidence 888777652 2 3477899999999999999864 568889999999999998874433 2
Q ss_pred cccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCC
Q 045323 563 FNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR 642 (740)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~ 642 (740)
..+++|+.|+|++|++.+ ++ .+..+++
T Consensus 172 ---------------------------------------------------~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~ 198 (605)
T 1m9s_A 172 ---------------------------------------------------AGLTKLQNLYLSKNHISD-LR-ALAGLKN 198 (605)
T ss_dssp ---------------------------------------------------TTCTTCCEEECCSSCCCB-CG-GGTTCTT
T ss_pred ---------------------------------------------------ccCCCCCEEECcCCCCCC-Ch-HHccCCC
Confidence 234588888888888874 33 5788888
Q ss_pred CcEEECcCCcCcccCCccc
Q 045323 643 IHTLNLSHNNLTGESPVTF 661 (740)
Q Consensus 643 L~~L~L~~N~l~~~~~~~l 661 (740)
|+.|+|++|++++.....+
T Consensus 199 L~~L~L~~N~l~~~p~~~~ 217 (605)
T 1m9s_A 199 LDVLELFSQECLNKPINHQ 217 (605)
T ss_dssp CSEEECCSEEEECCCCCCC
T ss_pred CCEEEccCCcCcCCccccc
Confidence 8888888888875544333
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.3e-16 Score=149.09 Aligned_cols=81 Identities=17% Similarity=0.328 Sum_probs=41.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+|+.|++++|++.+..|..+..+++|++|+|++|. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|+.|++
T Consensus 113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l 188 (197)
T 4ezg_A 113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA 188 (197)
T ss_dssp TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence 45555555555554455555555555555555555 43 222 34555555555555555553 22 4455555555555
Q ss_pred cCcccc
Q 045323 697 AFNNLS 702 (740)
Q Consensus 697 s~N~l~ 702 (740)
++|++.
T Consensus 189 ~~N~i~ 194 (197)
T 4ezg_A 189 FSQTIG 194 (197)
T ss_dssp CBC---
T ss_pred eCcccC
Confidence 555543
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.67 E-value=1.6e-16 Score=150.12 Aligned_cols=152 Identities=16% Similarity=0.301 Sum_probs=129.2
Q ss_pred CCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhh
Q 045323 511 NRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILY 590 (740)
Q Consensus 511 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~ 590 (740)
..+++|+.|++++|.+. .++ .+..+++|+.|++++|.+.. +..
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~--------------------------------- 83 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNP--------------------------------- 83 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGG---------------------------------
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chh---------------------------------
Confidence 45788999999999998 445 58889999999999996641 111
Q ss_pred hcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEE
Q 045323 591 TNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESL 670 (740)
Q Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|++.+..+..+..+++|++|+|++|++++..|..++.+++|++|
T Consensus 84 ----------------------l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L 141 (197)
T 4ezg_A 84 ----------------------ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSI 141 (197)
T ss_dssp ----------------------GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEE
T ss_pred ----------------------hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEE
Confidence 2345689999999999998788889999999999999999998889999999999999
Q ss_pred eCCCCc-cCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCC
Q 045323 671 DLSYNN-LNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 671 ~Ls~n~-l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++++|+ ++ .+| .+..+++|+.|++++|++++.. .+..+++|+.|++++|+.
T Consensus 142 ~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 142 DLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC--
T ss_pred EccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCccc
Confidence 999998 66 555 6899999999999999998754 578999999999999986
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.65 E-value=2e-16 Score=156.64 Aligned_cols=151 Identities=23% Similarity=0.283 Sum_probs=88.8
Q ss_pred hcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCccccc
Q 045323 450 FCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGE 529 (740)
Q Consensus 450 l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~ 529 (740)
+..+++|++|++++|.+. .++.+..+++|+.|++++|+++ .++. +..+++|+.|++++|++++.
T Consensus 37 ~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~--------------~~~~-l~~l~~L~~L~L~~N~l~~l 100 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQIS--------------DLSP-LKDLTKLEELSVNRNRLKNL 100 (263)
T ss_dssp HHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCC--------------CCGG-GTTCSSCCEEECCSSCCSCC
T ss_pred hhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccC--------------CChh-hccCCCCCEEECCCCccCCc
Confidence 344455555555555544 2222223444444444444433 2222 66677788888888877743
Q ss_pred CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccc
Q 045323 530 MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLY 609 (740)
Q Consensus 530 ~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~ 609 (740)
+. +.. ++|+.|++++|.+.+. + .
T Consensus 101 -~~-~~~-~~L~~L~L~~N~l~~~-~-~---------------------------------------------------- 123 (263)
T 1xeu_A 101 -NG-IPS-ACLSRLFLDNNELRDT-D-S---------------------------------------------------- 123 (263)
T ss_dssp -TT-CCC-SSCCEEECCSSCCSBS-G-G----------------------------------------------------
T ss_pred -Cc-ccc-CcccEEEccCCccCCC-h-h----------------------------------------------------
Confidence 22 222 7777777777776531 1 0
Q ss_pred eeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCcc
Q 045323 610 TYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGK 680 (740)
Q Consensus 610 ~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~ 680 (740)
+..+++|+.|++++|++++. + .+..+++|++|+|++|++++. ..+..+++|+.|++++|++++.
T Consensus 124 ---l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 124 ---LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 12344777777777777643 3 567777777777777777755 5566777777777777777644
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=6.6e-16 Score=143.21 Aligned_cols=114 Identities=21% Similarity=0.270 Sum_probs=106.1
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
++|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 48999999999999777777899999999999999999888888899999999999999999877778899999999999
Q ss_pred cCcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 697 AFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 697 s~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++|++++.++..+..+++|+++++++||+.|+|+
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 9999999988888899999999999999999997
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.64 E-value=1.5e-15 Score=142.61 Aligned_cols=162 Identities=22% Similarity=0.247 Sum_probs=110.7
Q ss_pred CCcEEecccCcccccCCc-cccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcc
Q 045323 515 QLRYLILANNGLEGEMPL-QLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNY 593 (740)
Q Consensus 515 ~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~ 593 (740)
++++|++++|.+.+..+. .+..+++|+.|++++|.+++..|..|..
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~--------------------------------- 76 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG--------------------------------- 76 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT---------------------------------
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC---------------------------------
Confidence 777888888887755543 4777888888888888877655554433
Q ss_pred cccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCC
Q 045323 594 HNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLS 673 (740)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls 673 (740)
+++|+.|++++|++.+..+..|..+++|++|+|++|++++..|..|..+++|+.|+|+
T Consensus 77 ----------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (192)
T 1w8a_A 77 ----------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134 (192)
T ss_dssp ----------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred ----------------------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeC
Confidence 2378888888888887777778888888888888888888888888888888899999
Q ss_pred CCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCCCCCC
Q 045323 674 YNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLLKSC 735 (740)
Q Consensus 674 ~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~~~~ 735 (740)
+|++.+..+... -...++...+..+......|. .+......++..+.+.|..+-...|
T Consensus 135 ~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~---~l~~~~l~~l~~~~~~C~~~~~~~c 192 (192)
T 1w8a_A 135 SNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS---KVRDVQIKDLPHSEFKCSSENSEGC 192 (192)
T ss_dssp TCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST---TTTTSBGGGSCTTTCCCCCC---CC
T ss_pred CCCccCcCcchH-HHHHHHHcCCCCCCCCCCCCh---HHcCCChhhCcHhhcCcCCCCCCCC
Confidence 988885443211 111233334455555444454 3344566677888888876544433
No 120
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.64 E-value=1.7e-18 Score=190.15 Aligned_cols=100 Identities=20% Similarity=0.243 Sum_probs=72.5
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC-CcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI-PPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 695 (740)
++|+.|++++|++. .+|..|..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.+ |..+..+++|+.|+
T Consensus 463 ~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~ 539 (567)
T 1dce_A 463 LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN 539 (567)
T ss_dssp TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence 36777777777776 667777778888888888888775 45 6777788888888888887665 77777788888888
Q ss_pred ccCcccccCCCCc---ccCCCCccccc
Q 045323 696 VAFNNLSGKTPDR---VAQFGTFEEDS 719 (740)
Q Consensus 696 ls~N~l~~~~~~~---~~~~~~l~~l~ 719 (740)
+++|++++.+|.. +..+++|+.|+
T Consensus 540 L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 540 LQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred ecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8888887776643 22356666664
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.5e-16 Score=153.44 Aligned_cols=174 Identities=18% Similarity=0.234 Sum_probs=140.3
Q ss_pred CCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCC
Q 045323 452 QLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMP 531 (740)
Q Consensus 452 ~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~ 531 (740)
.+.+++.++++++.+.+.. ....+++|+.|++++|.++ .++ .+..+++|++|++++|.+++..+
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~--------------~l~-~l~~l~~L~~L~L~~N~i~~~~~ 80 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQ--------------SLA-GMQFFTNLKELHLSHNQISDLSP 80 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCC--------------CCT-TGGGCTTCCEEECCSSCCCCCGG
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcc--------------cch-HHhhCCCCCEEECCCCccCCChh
Confidence 3556778889998887443 4555889999999999876 334 57788999999999999985544
Q ss_pred ccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeecccccee
Q 045323 532 LQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTY 611 (740)
Q Consensus 532 ~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~ 611 (740)
+..+++|+.|++++|++.+ +|..
T Consensus 81 --l~~l~~L~~L~L~~N~l~~-l~~~------------------------------------------------------ 103 (263)
T 1xeu_A 81 --LKDLTKLEELSVNRNRLKN-LNGI------------------------------------------------------ 103 (263)
T ss_dssp --GTTCSSCCEEECCSSCCSC-CTTC------------------------------------------------------
T ss_pred --hccCCCCCEEECCCCccCC-cCcc------------------------------------------------------
Confidence 8889999999999998863 2210
Q ss_pred ecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcC
Q 045323 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691 (740)
Q Consensus 612 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 691 (740)
.. ++|+.|++++|++.+ ++ .+..+++|++|+|++|++++. + .++.+++|+.|++++|++++. +.+..+++|
T Consensus 104 --~~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L 174 (263)
T 1xeu_A 104 --PS-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKV 174 (263)
T ss_dssp --CC-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCC
T ss_pred --cc-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCC
Confidence 01 489999999999985 44 588999999999999999965 3 688999999999999999965 678889999
Q ss_pred ceeeccCcccccCCCC
Q 045323 692 AVFSVAFNNLSGKTPD 707 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~~ 707 (740)
+.|++++|++++....
T Consensus 175 ~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 175 NWIDLTGQKCVNEPVK 190 (263)
T ss_dssp CEEEEEEEEEECCCEE
T ss_pred CEEeCCCCcccCCccc
Confidence 9999999999877443
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=2.1e-18 Score=189.32 Aligned_cols=203 Identities=20% Similarity=0.184 Sum_probs=125.1
Q ss_pred CCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCc-------------CcCCchhhhcCCCCCCEEE-CCCCcCccc
Q 045323 404 NCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNR-------------LEGPIPSAFCQLRHLEILD-LSRNNISGS 469 (740)
Q Consensus 404 ~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~L~~L~-l~~n~~~~~ 469 (740)
.++.|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+.++++|+.|+ ++.|.+.
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 3456666666666665 456666666666666665443 2333444445555555555 4443322
Q ss_pred CCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCc
Q 045323 470 LPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNN 549 (740)
Q Consensus 470 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~ 549 (740)
.|..+.+++|.++. ++ ...|+.|++++|.+++ +|. +..+++|+.|++++|.
T Consensus 424 --------~L~~l~l~~n~i~~--------------l~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~ 474 (567)
T 1dce_A 424 --------DLRSKFLLENSVLK--------------ME-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNR 474 (567)
T ss_dssp --------HHHHHHHHHHHHHH--------------HH-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSC
T ss_pred --------hhhhhhhhcccccc--------------cC-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccc
Confidence 33333344443321 11 1247778888887774 454 7777788888888887
Q ss_pred CcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcc
Q 045323 550 LSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKL 629 (740)
Q Consensus 550 ~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l 629 (740)
++ .+|..+.. +++|+.|++++|++
T Consensus 475 l~-~lp~~~~~-------------------------------------------------------l~~L~~L~Ls~N~l 498 (567)
T 1dce_A 475 LR-ALPPALAA-------------------------------------------------------LRCLEVLQASDNAL 498 (567)
T ss_dssp CC-CCCGGGGG-------------------------------------------------------CTTCCEEECCSSCC
T ss_pred cc-ccchhhhc-------------------------------------------------------CCCCCEEECCCCCC
Confidence 76 55544333 33777788888887
Q ss_pred cccChhhhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEEeCCCCccCccCCc---ccccCCcCceeec
Q 045323 630 IGEIPLQIGELSRIHTLNLSHNNLTGES-PVTFSHMKQVESLDLSYNNLNGKIPP---RLIELNALAVFSV 696 (740)
Q Consensus 630 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~---~l~~l~~L~~L~l 696 (740)
++ +| .+..+++|++|+|++|++++.. |..|+.+++|+.|+|++|++++.+|. .+..+++|+.|++
T Consensus 499 ~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 499 EN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 74 56 6777888888888888887665 77777888888888888888755442 2233677777754
No 123
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.62 E-value=1.1e-15 Score=140.11 Aligned_cols=110 Identities=24% Similarity=0.278 Sum_probs=101.9
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
..+.+++++|+++ .+|..+ .++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|+++
T Consensus 10 ~~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 10 SGTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp ETTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4678999999998 577665 3899999999999999989999999999999999999998777788999999999999
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
+|++++..+..++.+++|++|++++|||.|+|+
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 999999999889999999999999999999996
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.60 E-value=9.9e-16 Score=157.54 Aligned_cols=102 Identities=12% Similarity=0.091 Sum_probs=92.9
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCC-EEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVE-SLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~-~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+++|+.+++++|+++.+.+..|.++++|++|+|.+| ++.+.+.+|.++++|+ .+++.+ .++.+.+.+|..+++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 578999999999998777888999999999999998 8878899999999999 999999 7887778899999999999
Q ss_pred eccCcccccCCCCcccCCCCccccc
Q 045323 695 SVAFNNLSGKTPDRVAQFGTFEEDS 719 (740)
Q Consensus 695 ~ls~N~l~~~~~~~~~~~~~l~~l~ 719 (740)
++++|.++.+.+..|..+++|+.+.
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 9999999999999999999998775
No 125
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.59 E-value=6.8e-15 Score=135.08 Aligned_cols=136 Identities=21% Similarity=0.211 Sum_probs=106.6
Q ss_pred CCCCcEEecccCccc-ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 513 LPQLRYLILANNGLE-GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.++|+.|++++|.+. +.+|..+..+++|+.|++++|.+.+. ..
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~---------------------------------- 66 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SN---------------------------------- 66 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SS----------------------------------
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hh----------------------------------
Confidence 477888888888887 56677778888888888888887632 11
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccC-CccccCCCCCCEE
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGES-PVTFSHMKQVESL 670 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~-~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|++.+.+|..+..+++|++|+|++|++++.. +..+..+++|+.|
T Consensus 67 ---------------------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L 125 (168)
T 2ell_A 67 ---------------------LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125 (168)
T ss_dssp ---------------------CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEE
T ss_pred ---------------------hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEE
Confidence 234458888999999888768887888899999999999988643 2678888999999
Q ss_pred eCCCCccCccCC---cccccCCcCceeeccCcccccCC
Q 045323 671 DLSYNNLNGKIP---PRLIELNALAVFSVAFNNLSGKT 705 (740)
Q Consensus 671 ~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~N~l~~~~ 705 (740)
++++|++++..+ ..+..+++|+.|++++|.+....
T Consensus 126 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 163 (168)
T 2ell_A 126 DLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP 163 (168)
T ss_dssp ECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred EeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence 999999985554 47888889999999999887553
No 126
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=1.3e-13 Score=144.54 Aligned_cols=99 Identities=12% Similarity=0.055 Sum_probs=49.0
Q ss_pred CccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCC
Q 045323 359 YLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMP 438 (740)
Q Consensus 359 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 438 (740)
.++.+.+.. .++......|.++ +|+.+.+..+ +..+...+|.++ +|+.+.+.. .+......+|.+|++|+.+++.
T Consensus 114 ~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~ 188 (401)
T 4fdw_A 114 GYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLS 188 (401)
T ss_dssp SCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECT
T ss_pred CccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecC
Confidence 455555543 2333333444442 4666665544 444444455553 456665554 3443444555555566666665
Q ss_pred CCcCcCCchhhhcCCCCCCEEECCC
Q 045323 439 NNRLEGPIPSAFCQLRHLEILDLSR 463 (740)
Q Consensus 439 ~n~~~~~~~~~l~~l~~L~~L~l~~ 463 (740)
.|.++.+...+|. +.+|+.+.+..
T Consensus 189 ~n~l~~I~~~aF~-~~~L~~l~lp~ 212 (401)
T 4fdw_A 189 KTKITKLPASTFV-YAGIEEVLLPV 212 (401)
T ss_dssp TSCCSEECTTTTT-TCCCSEEECCT
T ss_pred CCcceEechhhEe-ecccCEEEeCC
Confidence 5555544444443 35555555553
No 127
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=4.2e-15 Score=152.80 Aligned_cols=76 Identities=12% Similarity=-0.007 Sum_probs=45.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCc-EEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIH-TLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~-~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
+|+.+++.+| +..+.+.+|.++++|+ .++|.+ .++.+.+.+|.++++|+++++++|.++.+.+..|.++++|+.++
T Consensus 251 ~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 251 YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555554 4444555566666666 666665 55555566666666666666666666655555666666666554
No 128
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.58 E-value=4.7e-15 Score=136.40 Aligned_cols=109 Identities=18% Similarity=0.243 Sum_probs=100.3
Q ss_pred ccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccC
Q 045323 619 MSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAF 698 (740)
Q Consensus 619 L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~ 698 (740)
-+.++++++++. .+|..+. ++|++|+|++|++++..|..|..+++|+.|+|++|+|++..+..|..+++|+.|++++
T Consensus 14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 478999999997 7777664 8999999999999999899999999999999999999977667789999999999999
Q ss_pred cccccCCCCcccCCCCccccccccCCCCCCcC
Q 045323 699 NNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 699 N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
|++++.++..++.+++|+.|++++|||.|+|+
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~ 122 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR 122 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence 99999988889999999999999999999996
No 129
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.56 E-value=1.3e-15 Score=172.71 Aligned_cols=101 Identities=13% Similarity=0.112 Sum_probs=33.4
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCC-CCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQ-VESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~-L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+|+.|+|++|.+. .+|..|..+++|++|+|++|.+++.+|..+..+.. +..++|++|.+++.+|.. |+.|++
T Consensus 294 ~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l 366 (727)
T 4b8c_D 294 QLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEI 366 (727)
T ss_dssp TCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC------------
T ss_pred CCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEe
Confidence 4555555555554 44544555555555555555555555544433211 122455555555444432 344445
Q ss_pred cCc--------ccccCCCCcccCCCCccccccccCCC
Q 045323 697 AFN--------NLSGKTPDRVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 697 s~N--------~l~~~~~~~~~~~~~l~~l~l~~Np~ 725 (740)
++| .+.+..+..+..+..+....++.|-+
T Consensus 367 ~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 367 NTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -----------------------------------CC
T ss_pred ecccccccccCCccccccchhhcccccceeeeecccc
Confidence 544 23333333333334444455566643
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.56 E-value=1.2e-14 Score=130.32 Aligned_cols=129 Identities=18% Similarity=0.208 Sum_probs=97.7
Q ss_pred CCCCcEEecccCccc-ccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhh
Q 045323 513 LPQLRYLILANNGLE-GEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYT 591 (740)
Q Consensus 513 ~~~L~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~ 591 (740)
.++|+.|++++|.++ +.+|..+..+++|+.|++++|.+.+. ..
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~---------------------------------- 59 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--AN---------------------------------- 59 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TT----------------------------------
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hh----------------------------------
Confidence 367888888888887 56677778888888888888887632 11
Q ss_pred cccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCccc-CCccccCCCCCCEE
Q 045323 592 NYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGE-SPVTFSHMKQVESL 670 (740)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~l~~l~~L~~L 670 (740)
+..+++|+.|++++|.+.+.+|..+..+++|++|++++|++++. .+..++.+++|+.|
T Consensus 60 ---------------------~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 60 ---------------------LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp ---------------------CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred ---------------------hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 22345788888888888866787777788888888888888864 34677888888888
Q ss_pred eCCCCccCccCC---cccccCCcCceeeccC
Q 045323 671 DLSYNNLNGKIP---PRLIELNALAVFSVAF 698 (740)
Q Consensus 671 ~Ls~n~l~~~~~---~~l~~l~~L~~L~ls~ 698 (740)
++++|++++..+ ..+..+++|+.|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888886555 4677788888888763
No 131
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.55 E-value=6.4e-15 Score=135.24 Aligned_cols=108 Identities=17% Similarity=0.124 Sum_probs=96.6
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccC-CcccccCCcCceee
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKI-PPRLIELNALAVFS 695 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-~~~l~~l~~L~~L~ 695 (740)
++|+.|++++|.+.+. ..+..+++|++|+|++|++++.+|..+..+++|+.|++++|++++.. +..+..+++|+.|+
T Consensus 49 ~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~ 126 (168)
T 2ell_A 49 VNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLD 126 (168)
T ss_dssp GGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEE
T ss_pred CCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEE
Confidence 4899999999999855 67899999999999999999878888888999999999999999542 27889999999999
Q ss_pred ccCcccccCCC---CcccCCCCccccccccCCCC
Q 045323 696 VAFNNLSGKTP---DRVAQFGTFEEDSYEGNPFL 726 (740)
Q Consensus 696 ls~N~l~~~~~---~~~~~~~~l~~l~l~~Np~~ 726 (740)
+++|++++..+ ..+..+++|++|++++|+..
T Consensus 127 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 127 LFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 99999998877 57889999999999998763
No 132
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.54 E-value=1.1e-15 Score=173.18 Aligned_cols=182 Identities=20% Similarity=0.162 Sum_probs=104.6
Q ss_pred CchhhhcCCCCCCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccC
Q 045323 445 PIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANN 524 (740)
Q Consensus 445 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n 524 (740)
..+..+..++.|+.|+|++|.+.......+.+++|+.|++++|.|+ .+|..+..+++|+.|+|++|
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~--------------~lp~~~~~l~~L~~L~Ls~N 280 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT--------------ELPAEIKNLSNLRVLDLSHN 280 (727)
T ss_dssp -------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS--------------CCCGGGGGGTTCCEEECTTS
T ss_pred cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc--------------ccChhhhCCCCCCEEeCcCC
Confidence 3445555666666666666666533333444566666666666554 56777888999999999999
Q ss_pred cccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeee
Q 045323 525 GLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTT 604 (740)
Q Consensus 525 ~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~ 604 (740)
.++ .+|..+..+++|+.|+|++|.+. .+|..|..
T Consensus 281 ~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~-------------------------------------------- 314 (727)
T 4b8c_D 281 RLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGN-------------------------------------------- 314 (727)
T ss_dssp CCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTS--------------------------------------------
T ss_pred cCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhc--------------------------------------------
Confidence 999 67888999999999999999886 55654443
Q ss_pred ccccceeecccCCCccEEEcccCcccccChhhhhcCCC-CcEEECcCCcCcccCCccccCCCCCCEEeCCCC--------
Q 045323 605 KQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSR-IHTLNLSHNNLTGESPVTFSHMKQVESLDLSYN-------- 675 (740)
Q Consensus 605 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~-L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n-------- 675 (740)
+++|+.|+|++|.+.+.+|..+..+.. +..|+|++|.+++.+|.. |+.|++++|
T Consensus 315 -----------l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~ 377 (727)
T 4b8c_D 315 -----------LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYD 377 (727)
T ss_dssp -----------CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-----------------------
T ss_pred -----------CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecccccccccC
Confidence 348999999999999888888766522 234789999998777754 456677777
Q ss_pred ccCccCCcccccCCcCceeeccCccccc
Q 045323 676 NLNGKIPPRLIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 676 ~l~~~~~~~l~~l~~L~~L~ls~N~l~~ 703 (740)
.+.+..+..+..+..+....+++|-+.+
T Consensus 378 ~l~~~~~~~~~~l~~~~~~~ls~Nil~~ 405 (727)
T 4b8c_D 378 SLQQSTEHLATDLAKRTFTVLSYNTLCQ 405 (727)
T ss_dssp ------------------------CCCG
T ss_pred Cccccccchhhcccccceeeeecccccc
Confidence 3444455556667777888888998753
No 133
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.54 E-value=5.6e-14 Score=131.71 Aligned_cols=86 Identities=26% Similarity=0.293 Sum_probs=54.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|+++
T Consensus 55 ~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~ 134 (193)
T 2wfh_A 55 HLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134 (193)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeC
Confidence 56666666666665555556666666666666666666666666666666666666666665444456666666666666
Q ss_pred Cccccc
Q 045323 698 FNNLSG 703 (740)
Q Consensus 698 ~N~l~~ 703 (740)
+|++..
T Consensus 135 ~N~~~C 140 (193)
T 2wfh_A 135 ANPLYC 140 (193)
T ss_dssp SSCEEC
T ss_pred CCCeec
Confidence 666643
No 134
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.54 E-value=4.8e-13 Score=141.12 Aligned_cols=239 Identities=11% Similarity=0.035 Sum_probs=142.2
Q ss_pred CcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCCCcCcccCCCCCCCCc
Q 045323 399 PKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSRNNISGSLPSCSSPFN 478 (740)
Q Consensus 399 ~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 478 (740)
..+|.++++|+.+.+.++... ....+|.++.+|+.+.+..+ ++.+...+|.+++.|+.+.+..+... .......+..
T Consensus 155 ~~aF~~c~~L~~i~l~~~~~~-I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~~~~~~~~~ 231 (394)
T 4fs7_A 155 DEAFATCESLEYVSLPDSMET-LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LGDFALSKTG 231 (394)
T ss_dssp TTTTTTCTTCCEEECCTTCCE-ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-ECTTTTTTCC
T ss_pred hhhhcccCCCcEEecCCccce-eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-eehhhcccCC
Confidence 345666666666666544322 44456666666666666554 33344456666666666666554332 2222333445
Q ss_pred ccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccc
Q 045323 479 IRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCL 558 (740)
Q Consensus 479 L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~ 558 (740)
|+.+.+....- ......+..+..++.+.+..+... .....|..+..++.+......+.
T Consensus 232 l~~i~ip~~~~--------------~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~------- 289 (394)
T 4fs7_A 232 VKNIIIPDSFT--------------ELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP------- 289 (394)
T ss_dssp CCEEEECTTCC--------------EECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC-------
T ss_pred CceEEECCCce--------------ecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec-------
Confidence 55555533211 012344556677777777655433 44455666666666655543221
Q ss_pred cccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhh
Q 045323 559 YNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIG 638 (740)
Q Consensus 559 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~ 638 (740)
...+..+.+|+.+.+..+ +..+...+|.
T Consensus 290 ---------------------------------------------------~~~F~~~~~L~~i~l~~~-i~~I~~~aF~ 317 (394)
T 4fs7_A 290 ---------------------------------------------------EKTFYGCSSLTEVKLLDS-VKFIGEEAFE 317 (394)
T ss_dssp ---------------------------------------------------TTTTTTCTTCCEEEECTT-CCEECTTTTT
T ss_pred ---------------------------------------------------cccccccccccccccccc-cceechhhhc
Confidence 112234457777777654 5545667788
Q ss_pred cCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeeccCcccccCCCCcccCCCCcccc
Q 045323 639 ELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEED 718 (740)
Q Consensus 639 ~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l 718 (740)
++++|+.++|..+ ++.+...+|.++++|+++++..+ ++.+...+|..+++|+.+++..+ +.. +...|...++|+.+
T Consensus 318 ~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~-~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 318 SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQ-YRYDFEDTTKFKWI 393 (394)
T ss_dssp TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGG-GGGGBCTTCEEEEE
T ss_pred CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEE-hhheecCCCCCcEE
Confidence 8888888888744 77677888888888888888776 66566778888888888888765 221 23446666665543
No 135
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=5.9e-15 Score=132.44 Aligned_cols=105 Identities=15% Similarity=0.134 Sum_probs=93.3
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCcc-CCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGK-IPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L 694 (740)
+++|+.|++++|.+.+. ..+..+++|++|+|++|.+++.+|..+..+++|+.|++++|++++. .+..+..+++|+.|
T Consensus 41 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L 118 (149)
T 2je0_A 41 FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL 118 (149)
T ss_dssp CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence 44899999999999865 6789999999999999999987888888899999999999999964 34789999999999
Q ss_pred eccCcccccCCC---CcccCCCCcccccccc
Q 045323 695 SVAFNNLSGKTP---DRVAQFGTFEEDSYEG 722 (740)
Q Consensus 695 ~ls~N~l~~~~~---~~~~~~~~l~~l~l~~ 722 (740)
++++|++++..+ ..+..+++|+.|++++
T Consensus 119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred eCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998877 5688899999999864
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.54 E-value=5.8e-13 Score=139.60 Aligned_cols=124 Identities=14% Similarity=0.194 Sum_probs=70.2
Q ss_pred CCCCcEEeccCCcccccCCCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecCCcCCCCCCC
Q 045323 328 LPNLVVLNVATNAFNGSIPSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSA 407 (740)
Q Consensus 328 l~~L~~L~l~~n~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~ 407 (740)
+..++.+.+.+. ++.....+|.. | +|+.+.+..+ +.......|.+ .+|+.+.+.. .+..+...+|.+|++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~-----~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~ 181 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRN-----S-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYN 181 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTT-----C-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTT
T ss_pred cCCccEEEECCc-cCEehHhhccc-----C-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCccc
Confidence 345566655543 22233334433 1 4666666554 44444445555 3566776664 445455566666777
Q ss_pred CceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCC
Q 045323 408 LQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463 (740)
Q Consensus 408 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 463 (740)
|+.+++.+|.++.....+|. +.+|+.+.+..+ ++.+...+|.+|++|+.+++..
T Consensus 182 L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 182 LKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred CCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence 77777776666654445555 466777776633 4445555666666666666654
No 137
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=9.4e-14 Score=128.59 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=58.6
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
+|+.|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+..+..+++|+.|+++
T Consensus 53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 132 (177)
T 2o6r_A 53 QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLH 132 (177)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEec
Confidence 56666666666665555556667777777777777776666666667777777777777765555555666777777777
Q ss_pred CcccccCCC
Q 045323 698 FNNLSGKTP 706 (740)
Q Consensus 698 ~N~l~~~~~ 706 (740)
+|++.+..|
T Consensus 133 ~N~~~~~~~ 141 (177)
T 2o6r_A 133 TNPWDCSCP 141 (177)
T ss_dssp SSCBCCCHH
T ss_pred CCCeeccCc
Confidence 777665544
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.50 E-value=2e-12 Score=136.33 Aligned_cols=238 Identities=10% Similarity=0.051 Sum_probs=140.6
Q ss_pred ccccCCCCCCeeecCCCcceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCC
Q 045323 376 SKEFNLTKLKRLNLDGNHFIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRH 455 (740)
Q Consensus 376 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~ 455 (740)
..|.++.+|+.+.+.++. ......+|.++.+|+.+.+..+ +......+|.++..|+.+.+..+... +...+.....
T Consensus 156 ~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~ 231 (394)
T 4fs7_A 156 EAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTG 231 (394)
T ss_dssp TTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCC
T ss_pred hhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCC
Confidence 345556666666665432 2244455666666666666554 33344455666666666665544332 2222334456
Q ss_pred CCEEECCCCcCcccCCCCCCCCcccEEEcCCCcccCcCccccCCCcCCCCCCcccCCCCCCcEEecccCcccccCCcccc
Q 045323 456 LEILDLSRNNISGSLPSCSSPFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMNRLPQLRYLILANNGLEGEMPLQLC 535 (740)
Q Consensus 456 L~~L~l~~n~~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~ 535 (740)
|+.+.+......-....+..+..++.+.+..+... .....|..+..++.+......+ ....+.
T Consensus 232 l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~--------------i~~~~F~~~~~l~~~~~~~~~i---~~~~F~ 294 (394)
T 4fs7_A 232 VKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR--------------IGGSLFYNCSGLKKVIYGSVIV---PEKTFY 294 (394)
T ss_dssp CCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE--------------ECSCTTTTCTTCCEEEECSSEE---CTTTTT
T ss_pred CceEEECCCceecccccccccccceeEEcCCCcce--------------eeccccccccccceeccCceee---cccccc
Confidence 66666654322211223334666666666554321 2234566677777777665433 234567
Q ss_pred CCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeeccc
Q 045323 536 WLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQP 615 (740)
Q Consensus 536 ~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 615 (740)
.+.+|+.+.+.++ +...... .+..
T Consensus 295 ~~~~L~~i~l~~~-i~~I~~~-------------------------------------------------------aF~~ 318 (394)
T 4fs7_A 295 GCSSLTEVKLLDS-VKFIGEE-------------------------------------------------------AFES 318 (394)
T ss_dssp TCTTCCEEEECTT-CCEECTT-------------------------------------------------------TTTT
T ss_pred ccccccccccccc-cceechh-------------------------------------------------------hhcC
Confidence 7788888877654 2211111 2234
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+.+|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.++++|+++++..+ +. .+...|.++++|+.+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 447777777643 55566778889999999999877 77778889999999999999765 33 334567788887764
No 139
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=9.8e-14 Score=128.25 Aligned_cols=135 Identities=15% Similarity=0.098 Sum_probs=97.9
Q ss_pred ccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchhhHH
Q 045323 509 WMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQI 588 (740)
Q Consensus 509 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~ 588 (740)
.+..+++|+.|++++|.++. ++......++|+.|++++|.+.+. .
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~-------------------------------- 58 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--D-------------------------------- 58 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--C--------------------------------
T ss_pred hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--c--------------------------------
Confidence 35567888889999888884 344333334888888888887632 1
Q ss_pred hhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCc--cccCCCC
Q 045323 589 LYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPV--TFSHMKQ 666 (740)
Q Consensus 589 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~--~l~~l~~ 666 (740)
.+..+++|+.|++++|++.+..+..+..+++|++|+|++|+++. +|. .+..+++
T Consensus 59 -----------------------~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~l~~l~~ 114 (176)
T 1a9n_A 59 -----------------------GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVE-LGDLDPLASLKS 114 (176)
T ss_dssp -----------------------CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCC-GGGGGGGGGCTT
T ss_pred -----------------------ccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCc-chhhHhhhcCCC
Confidence 12344578888888888886555556888888888888888873 444 6778888
Q ss_pred CCEEeCCCCccCccCCcc----cccCCcCceeeccCccccc
Q 045323 667 VESLDLSYNNLNGKIPPR----LIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 667 L~~L~Ls~n~l~~~~~~~----l~~l~~L~~L~ls~N~l~~ 703 (740)
|+.|++++|+++ .+|.. +..+++|+.||+++|....
T Consensus 115 L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 115 LTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 888888888887 44553 7778888888888887653
No 140
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=2.4e-13 Score=125.61 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=72.8
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCc--ccccCCcCceee
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPP--RLIELNALAVFS 695 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~--~l~~l~~L~~L~ 695 (740)
+|+.|++++|++.+. ..|..+++|++|+|++|++++..+..|..+++|+.|++++|+++ .+|+ .+..+++|+.|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 677777777777654 45677777777777777777555555577777777777777776 3444 666777777777
Q ss_pred ccCcccccCCCC---cccCCCCccccccccCCC
Q 045323 696 VAFNNLSGKTPD---RVAQFGTFEEDSYEGNPF 725 (740)
Q Consensus 696 ls~N~l~~~~~~---~~~~~~~l~~l~l~~Np~ 725 (740)
+++|+++...+. .+..+++|+.+++++|+.
T Consensus 120 l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 120 ILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred ecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 777777654332 356777777777777653
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.44 E-value=1.7e-13 Score=142.20 Aligned_cols=110 Identities=18% Similarity=0.251 Sum_probs=101.2
Q ss_pred cEEEcccC-cccccChhhhhcCCCCcEEECcC-CcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeecc
Q 045323 620 SGLDLSCN-KLIGEIPLQIGELSRIHTLNLSH-NNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSVA 697 (740)
Q Consensus 620 ~~L~ls~n-~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ls 697 (740)
..++++++ +++ .+|. |..+++|++|+|++ |.+++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 45799998 887 6888 99999999999996 99998888999999999999999999999999999999999999999
Q ss_pred CcccccCCCCcccCCCCccccccccCCCCCCcCCC
Q 045323 698 FNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPLL 732 (740)
Q Consensus 698 ~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l~ 732 (740)
+|+|++.++..+..++ |+.|++.+|++.|+|.+.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~ 122 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALR 122 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGH
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccH
Confidence 9999999888887776 999999999999999853
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.39 E-value=2.6e-15 Score=141.94 Aligned_cols=87 Identities=18% Similarity=0.157 Sum_probs=45.5
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCC-cccccCCcCceeec
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIP-PRLIELNALAVFSV 696 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~-~~l~~l~~L~~L~l 696 (740)
+|+.|++++|++. .+|..+..+++|++|+|++|++++ +| .+..+++|+.|++++|+++...+ +.+..+++|+.|++
T Consensus 71 ~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l 147 (198)
T 1ds9_A 71 NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLL 147 (198)
T ss_dssp TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEE
T ss_pred CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEe
Confidence 5555555555554 444444555555555555555553 22 34555555555555555553221 34555555555555
Q ss_pred cCcccccCCCC
Q 045323 697 AFNNLSGKTPD 707 (740)
Q Consensus 697 s~N~l~~~~~~ 707 (740)
++|++.+..|.
T Consensus 148 ~~N~l~~~~~~ 158 (198)
T 1ds9_A 148 AGNPLYNDYKE 158 (198)
T ss_dssp CSCHHHHHHHT
T ss_pred cCCcccccccc
Confidence 55555554443
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=2.8e-12 Score=117.35 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=83.2
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+.|+.|++++|++++..|..|.++++|++|+|++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|++
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 109 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL 109 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence 37899999999999888999999999999999999999888888999999999999999999777778999999999999
Q ss_pred cCcccccCCC
Q 045323 697 AFNNLSGKTP 706 (740)
Q Consensus 697 s~N~l~~~~~ 706 (740)
++|++....+
T Consensus 110 ~~N~~~c~c~ 119 (170)
T 3g39_A 110 LNNPWDCACS 119 (170)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCCCCCch
Confidence 9999987654
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=4.3e-14 Score=133.49 Aligned_cols=136 Identities=19% Similarity=0.251 Sum_probs=108.8
Q ss_pred CCcccCCCCCCcEEecccCcccccCCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhccchh
Q 045323 506 IPDWMNRLPQLRYLILANNGLEGEMPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILYQLPQ 585 (740)
Q Consensus 506 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~ 585 (740)
+|..+..+++|++|++++|.+.+ +| .+..+++|+.|++++|.+. .+|..+.
T Consensus 40 l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-------------------------- 90 (198)
T 1ds9_A 40 MDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-------------------------- 90 (198)
T ss_dssp CHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH--------------------------
T ss_pred hhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh--------------------------
Confidence 44577888999999999999985 55 7888999999999999886 3443221
Q ss_pred hHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCC-ccccCC
Q 045323 586 LQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESP-VTFSHM 664 (740)
Q Consensus 586 L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~l~~l 664 (740)
.+++|+.|++++|++.+ +| .+..+++|++|+|++|++++..+ ..+..+
T Consensus 91 -----------------------------~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 91 -----------------------------VADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139 (198)
T ss_dssp -----------------------------HHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTT
T ss_pred -----------------------------cCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcC
Confidence 12378999999999985 45 68899999999999999996443 578899
Q ss_pred CCCCEEeCCCCccCccCCcc----------cccCCcCceeeccCccccc
Q 045323 665 KQVESLDLSYNNLNGKIPPR----------LIELNALAVFSVAFNNLSG 703 (740)
Q Consensus 665 ~~L~~L~Ls~n~l~~~~~~~----------l~~l~~L~~L~ls~N~l~~ 703 (740)
++|+.|++++|++.+.+|.. +..+++|+.|| +|+++.
T Consensus 140 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp TTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 99999999999998765543 77889999887 777754
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.32 E-value=7.2e-12 Score=114.99 Aligned_cols=90 Identities=21% Similarity=0.206 Sum_probs=82.0
Q ss_pred CCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceeec
Q 045323 617 HSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFSV 696 (740)
Q Consensus 617 ~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~l 696 (740)
+.|+.|++++|++.+..|..|..+++|++|+|++|++++..+..|..+++|+.|+|++|+|++..+..+..+++|+.|++
T Consensus 33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 112 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112 (174)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence 37899999999999888999999999999999999999887778899999999999999999766667999999999999
Q ss_pred cCcccccCCC
Q 045323 697 AFNNLSGKTP 706 (740)
Q Consensus 697 s~N~l~~~~~ 706 (740)
++|++....+
T Consensus 113 ~~N~~~c~~~ 122 (174)
T 2r9u_A 113 YNNPWDCECR 122 (174)
T ss_dssp CSSCBCTTBG
T ss_pred CCCCcccccc
Confidence 9999986644
No 146
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.30 E-value=3.5e-10 Score=119.17 Aligned_cols=101 Identities=7% Similarity=0.081 Sum_probs=52.4
Q ss_pred CCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCceee
Q 045323 616 LHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVFS 695 (740)
Q Consensus 616 ~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~ 695 (740)
++.|+.+++. +.+..+....|.++.+|++++|..+ ++.+...+|.++++|+++.|..+ ++.+...+|.++++|+.++
T Consensus 287 c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~ 363 (394)
T 4gt6_A 287 CPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIE 363 (394)
T ss_dssp CTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEE
T ss_pred ccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEE
Confidence 3455555554 2343344555666666666666543 55455666666666666666543 4434455666666666666
Q ss_pred ccCcccccCCCCcccCCCCcccccccc
Q 045323 696 VAFNNLSGKTPDRVAQFGTFEEDSYEG 722 (740)
Q Consensus 696 ls~N~l~~~~~~~~~~~~~l~~l~l~~ 722 (740)
+.++.... ..+....+|+.+.+..
T Consensus 364 ~~~~~~~~---~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 364 YSGSRSQW---NAISTDSGLQNLPVAP 387 (394)
T ss_dssp ESSCHHHH---HTCBCCCCC-------
T ss_pred ECCceeeh---hhhhccCCCCEEEeCC
Confidence 66664321 2234445555555544
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.26 E-value=6.5e-10 Score=117.07 Aligned_cols=110 Identities=7% Similarity=0.118 Sum_probs=92.3
Q ss_pred eecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCc
Q 045323 611 YEVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNA 690 (740)
Q Consensus 611 ~~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~ 690 (740)
..+..+..|+.+.+..+... +....|.+++.|+.+.+. +.++.....+|.++++|++++|..+ ++.+...+|..+++
T Consensus 259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 35567788999999766543 667789999999999996 5677788899999999999999865 66566789999999
Q ss_pred CceeeccCcccccCCCCcccCCCCccccccccCC
Q 045323 691 LAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNP 724 (740)
Q Consensus 691 L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np 724 (740)
|+.+.+..+ ++.+....|..+.+|+.+++.+|.
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 999999765 777778889999999999998875
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.15 E-value=1e-12 Score=136.43 Aligned_cols=62 Identities=23% Similarity=0.231 Sum_probs=30.6
Q ss_pred CccEEEcccCcccccC----hhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCc
Q 045323 618 SMSGLDLSCNKLIGEI----PLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNG 679 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~----~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~ 679 (740)
+|+.||+++|.+.+.. +..+...++|++|+|++|.+++. ++..+...++|++|+|++|.|+.
T Consensus 184 ~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 184 SVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp SCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 4555555555543221 33344455555555555555532 22333344556666666665553
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.14 E-value=1.7e-12 Score=134.69 Aligned_cols=175 Identities=18% Similarity=0.204 Sum_probs=122.1
Q ss_pred CCcccEEEcCCCcccCcCccccCCCcCCCCCCcccC-CCCCCcEEecccCcccccCCccc-cCCCCCCEEEccCCcCcCC
Q 045323 476 PFNIRRVHLSKNMLQGPLLGDLSYNRLNSNIPDWMN-RLPQLRYLILANNGLEGEMPLQL-CWLNKLQLVDLSHNNLSGQ 553 (740)
Q Consensus 476 ~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~~~~~~-~~~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~ 553 (740)
.+.|+.|++++|.++..... .+...+. ..++|++|++++|.++......+ ..+++|+.|++++|.+++.
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~---------~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~ 141 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCT---------VVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPE 141 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHH---------HHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHH
T ss_pred HhhCCEEEecCCCCCHHHHH---------HHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHH
Confidence 57889999999887633211 1122233 23689999999999875433332 3456899999999987632
Q ss_pred CCccccccccccccCCCCccCCCchhhccchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc-
Q 045323 554 IPHCLYNISFNYREDNHDLFDQDPQILYQLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE- 632 (740)
Q Consensus 554 ~p~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~- 632 (740)
....+...- ....+.|+.|++++|.++..
T Consensus 142 ~~~~L~~~L--------------------------------------------------~~~~~~L~~L~Ls~n~l~~~~ 171 (372)
T 3un9_A 142 ACKDLRDLL--------------------------------------------------LHDQCQITTLRLSNNPLTAAG 171 (372)
T ss_dssp HHHHHHHHH--------------------------------------------------HSTTCCCCEEECCSSCCHHHH
T ss_pred HHHHHHHHH--------------------------------------------------HhcCCccceeeCCCCCCChHH
Confidence 222111100 02345899999999998753
Q ss_pred ---ChhhhhcCCCCcEEECcCCcCcccC----CccccCCCCCCEEeCCCCccCcc----CCcccccCCcCceeeccCccc
Q 045323 633 ---IPLQIGELSRIHTLNLSHNNLTGES----PVTFSHMKQVESLDLSYNNLNGK----IPPRLIELNALAVFSVAFNNL 701 (740)
Q Consensus 633 ---~~~~l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~----~~~~l~~l~~L~~L~ls~N~l 701 (740)
++..+..+++|++|+|++|.+++.. +..+...++|++|+|++|.|+.. ++..+...++|+.|+|++|++
T Consensus 172 ~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp HHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred HHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 3445577899999999999998643 56677888999999999999853 445566679999999999999
Q ss_pred ccCCCCcc
Q 045323 702 SGKTPDRV 709 (740)
Q Consensus 702 ~~~~~~~~ 709 (740)
+......+
T Consensus 252 ~~~g~~~L 259 (372)
T 3un9_A 252 SSEGRQVL 259 (372)
T ss_dssp CHHHHHHH
T ss_pred CHHHHHHH
Confidence 76544433
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.12 E-value=9e-11 Score=121.53 Aligned_cols=114 Identities=15% Similarity=0.173 Sum_probs=89.4
Q ss_pred CCCccEEEccc-CcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcCcee
Q 045323 616 LHSMSGLDLSC-NKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNALAVF 694 (740)
Q Consensus 616 ~~~L~~L~ls~-n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 694 (740)
+++|+.|+|++ |.+.+..+..|.++++|+.|+|++|++++..|..|..+++|+.|+|++|+|++..+..+..++ |+.|
T Consensus 30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l 108 (347)
T 2ifg_A 30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL 108 (347)
T ss_dssp CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence 34899999996 999988888999999999999999999999999999999999999999999976666666666 9999
Q ss_pred eccCcccccCCC-CcccCCCCccccccccCCCCCCcC
Q 045323 695 SVAFNNLSGKTP-DRVAQFGTFEEDSYEGNPFLCGQP 730 (740)
Q Consensus 695 ~ls~N~l~~~~~-~~~~~~~~l~~l~l~~Np~~c~~~ 730 (740)
++++|++...-. ..+..+.......+..+.+.|..+
T Consensus 109 ~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~ 145 (347)
T 2ifg_A 109 VLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQ 145 (347)
T ss_dssp ECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSS
T ss_pred EeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCC
Confidence 999999975422 111111122334455677777654
No 151
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.02 E-value=9e-08 Score=100.14 Aligned_cols=57 Identities=7% Similarity=-0.021 Sum_probs=32.7
Q ss_pred hcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCchhhhhcCCCCcEEecc
Q 045323 277 EKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPIEIGEVLPNLVVLNVA 337 (740)
Q Consensus 277 ~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~L~~L~l~ 337 (740)
....+|+.+.+... ++.....+|.++.+|+.+++..+ ++ .++...+..+ +|+.+.+.
T Consensus 43 ~~~~~i~~v~ip~~-vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~ 99 (379)
T 4h09_A 43 KDRDRISEVRVNSG-ITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGM 99 (379)
T ss_dssp GGGGGCSEEEECTT-EEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEEC
T ss_pred ccccCCEEEEeCCC-ccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECC
Confidence 45667777777542 44445566777777777777543 43 4444444433 45555443
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.01 E-value=5.3e-08 Score=101.93 Aligned_cols=99 Identities=12% Similarity=0.081 Sum_probs=74.8
Q ss_pred ecccCCCccEEEcccCcccccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccCccCCcccccCCcC
Q 045323 612 EVQPLHSMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLNGKIPPRLIELNAL 691 (740)
Q Consensus 612 ~~~~~~~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L 691 (740)
.+..+.+|+.+++..+ +.......|.++++|+.+.+.++.++.+...+|.++++|++++|..+ ++.+...+|.++++|
T Consensus 258 aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L 335 (379)
T 4h09_A 258 LLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKAL 335 (379)
T ss_dssp TTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCC
Confidence 3445567888888654 44455667888999999999988888888889999999999999765 665666788889999
Q ss_pred ceeeccCcccccCCCCcccCCC
Q 045323 692 AVFSVAFNNLSGKTPDRVAQFG 713 (740)
Q Consensus 692 ~~L~ls~N~l~~~~~~~~~~~~ 713 (740)
+.+.+..+ ++.+....|...+
T Consensus 336 ~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 336 STISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCCCCCTT-CCEECTTTTTTSS
T ss_pred CEEEECCc-cCEEchhHhhCCC
Confidence 99988755 5555566665543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.80 E-value=3.7e-09 Score=108.50 Aligned_cols=84 Identities=17% Similarity=0.201 Sum_probs=54.7
Q ss_pred cCCCccEEEcccCcccccChhhhh---cCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCccCccCCccccc
Q 045323 615 PLHSMSGLDLSCNKLIGEIPLQIG---ELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNNLNGKIPPRLIE 687 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~~~~~l~---~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~ 687 (740)
.+++|+.|++++|.+....+..+. .+++|++|+|+.|.+++. ++..+..+++|+.|+|++|.|+...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 356788888888877644444443 367888888888888764 3344455678888888888877433223332
Q ss_pred -CCcCceeeccCcc
Q 045323 688 -LNALAVFSVAFNN 700 (740)
Q Consensus 688 -l~~L~~L~ls~N~ 700 (740)
+ ...++++.++
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 3557888776
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.51 E-value=2.2e-07 Score=95.25 Aligned_cols=187 Identities=16% Similarity=0.140 Sum_probs=98.7
Q ss_pred hcCCCCCCEEEcCCCCCCC--------CCChhHHhcCCCCCEEEccCCcccccCCCCCCCCCCCCEEEccCCcccccCch
Q 045323 251 LYHQHDLEYVDLSHLNLTR--------EFPNWLLEKNKKLKRLSLVNISLFGPFPLPIHCHKNLRVLDVSNNKLQGHIPI 322 (740)
Q Consensus 251 l~~l~~L~~L~L~~~~~~~--------~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~~~ 322 (740)
...+++|+.|.+....... .....++..+|+|++|+++++.... .+. + .+++|++|++..+.+......
T Consensus 135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~-l~~-~-~~~~L~~L~L~~~~l~~~~l~ 211 (362)
T 2ra8_A 135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS-IGK-K-PRPNLKSLEIISGGLPDSVVE 211 (362)
T ss_dssp HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB-CCS-C-BCTTCSEEEEECSBCCHHHHH
T ss_pred hhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce-ecc-c-cCCCCcEEEEecCCCChHHHH
Confidence 4566788888886543210 1122344677889999988773221 222 3 267888888888776643333
Q ss_pred hhhh-cCCCCcEEeccCC--cccccC-CCCccCcCccccCCccEEEccCCCCCCcCcccccCCCCCCeeecCCCcceecC
Q 045323 323 EIGE-VLPNLVVLNVATN--AFNGSI-PSSFGNTWPWGCFYLEYLVLSNNSLQGQLFSKEFNLTKLKRLNLDGNHFIGDI 398 (740)
Q Consensus 323 ~~~~-~l~~L~~L~l~~n--~~~~~~-~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 398 (740)
.+.. .+|+|+.|+++.+ ...+.. ...+.... ....+|+|+.|++.+|.+.+..
T Consensus 212 ~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l-----------------------~~~~~p~Lr~L~L~~~~i~~~~ 268 (362)
T 2ra8_A 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF-----------------------SKDRFPNLKWLGIVDAEEQNVV 268 (362)
T ss_dssp HHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGS-----------------------CTTTCTTCCEEEEESCTTHHHH
T ss_pred HHHHccCCCCcEEEEeccccccccchhHHHHHHHH-----------------------hcCCCCCcCEEeCCCCCCchHH
Confidence 3332 3678888877532 111000 00000000 0013456666666665554321
Q ss_pred CcCC---CCCCCCceEeCCCcccccC----CCcCCCCCCCCCEEeCCCCcCcCCchhhhcC-CCCCCEEECCCCc
Q 045323 399 PKTL---SNCSALQGLYISDNNISGN----IPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQ-LRHLEILDLSRNN 465 (740)
Q Consensus 399 ~~~l---~~~~~L~~L~l~~n~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~-l~~L~~L~l~~n~ 465 (740)
+..+ ..+++|++|+++.|.+.+. ++..+..+++|+.|++++|.+++.....+.. + ...++++.+.
T Consensus 269 ~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 269 VEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 1111 2356677777777766542 2223345677777777777766444444433 2 3556776655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=6.3e-08 Score=89.50 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=49.3
Q ss_pred CccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeC--CCCccCcc----CCc
Q 045323 618 SMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDL--SYNNLNGK----IPP 683 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~L--s~n~l~~~----~~~ 683 (740)
.|++|++++|++... +...+...++|++|+|++|.+++. +...+...++|++|+| ++|.|... +..
T Consensus 66 ~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~ 145 (185)
T 1io0_A 66 YVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIAN 145 (185)
T ss_dssp SCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHH
T ss_pred CcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHH
Confidence 455555555555432 233344456666666666666643 3445556666777777 66766632 334
Q ss_pred ccccCCcCceeeccCcccc
Q 045323 684 RLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 684 ~l~~l~~L~~L~ls~N~l~ 702 (740)
.+...+.|+.|++++|.+.
T Consensus 146 ~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 146 MLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHCSSCCEEECCCSSHH
T ss_pred HHHhCCCcCEEeccCCCCC
Confidence 4555567777777777664
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=98.38 E-value=2.9e-07 Score=78.92 Aligned_cols=62 Identities=18% Similarity=0.300 Sum_probs=48.7
Q ss_pred CEEeCCCCccC-ccCCcccccCCcCceeeccCcccccCCCCcccCCCCccccccccCCCCCCcCC
Q 045323 668 ESLDLSYNNLN-GKIPPRLIELNALAVFSVAFNNLSGKTPDRVAQFGTFEEDSYEGNPFLCGQPL 731 (740)
Q Consensus 668 ~~L~Ls~n~l~-~~~~~~l~~l~~L~~L~ls~N~l~~~~~~~~~~~~~l~~l~l~~Np~~c~~~l 731 (740)
..++.++++++ ..+|..+. ++|+.|+|++|+|+.+.+..|..+++|+.|+|.+|||.|+|.+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l 73 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL 73 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence 36777777775 34554433 3688888888888888888888889999999999999999985
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.35 E-value=9.7e-08 Score=88.23 Aligned_cols=121 Identities=10% Similarity=0.108 Sum_probs=87.5
Q ss_pred CcccCCCCCCcEEecccC-ccccc----CCccccCCCCCCEEEccCCcCcCCCCccccccccccccCCCCccCCCchhhc
Q 045323 507 PDWMNRLPQLRYLILANN-GLEGE----MPLQLCWLNKLQLVDLSHNNLSGQIPHCLYNISFNYREDNHDLFDQDPQILY 581 (740)
Q Consensus 507 ~~~~~~~~~L~~L~ls~n-~l~~~----~~~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~ 581 (740)
...+...++|++|++++| .+... +...+...++|++|++++|.+.+.....+..
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~--------------------- 87 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE--------------------- 87 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH---------------------
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH---------------------
Confidence 345667889999999998 88743 2344666789999999999876322111111
Q ss_pred cchhhHHhhhcccccceeeeeeeccccceeecccCCCccEEEcccCccccc----ChhhhhcCCCCcEEEC--cCCcCcc
Q 045323 582 QLPQLQILYTNYHNHKYLTNFTTKQRLYTYEVQPLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNL--SHNNLTG 655 (740)
Q Consensus 582 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L--~~N~l~~ 655 (740)
.+...+.|+.|++++|.+... +...+...++|++|+| ++|.++.
T Consensus 88 ------------------------------~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 88 ------------------------------MLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp ------------------------------HHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred ------------------------------HHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 112335799999999998754 3556777789999999 8899986
Q ss_pred c----CCccccCCCCCCEEeCCCCccC
Q 045323 656 E----SPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 656 ~----~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
. +...+...++|++|+|++|.+.
T Consensus 138 ~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 138 NVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 4 3456666789999999999986
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=1.1e-07 Score=92.18 Aligned_cols=80 Identities=21% Similarity=0.221 Sum_probs=54.7
Q ss_pred hcCCCCcEEECcCCcCccc--CCccccCCCCCCEEeCCCCccCccCCcccccCC--cCceeeccCcccccCCCC------
Q 045323 638 GELSRIHTLNLSHNNLTGE--SPVTFSHMKQVESLDLSYNNLNGKIPPRLIELN--ALAVFSVAFNNLSGKTPD------ 707 (740)
Q Consensus 638 ~~l~~L~~L~L~~N~l~~~--~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~--~L~~L~ls~N~l~~~~~~------ 707 (740)
.++++|+.|+|++|++++. +|..+..+++|+.|+|++|+|++. +.+..+. +|+.|++++|++++..|+
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 4577888888888888763 345566778888888888888754 3334444 788888888888765552
Q ss_pred -cccCCCCccccc
Q 045323 708 -RVAQFGTFEEDS 719 (740)
Q Consensus 708 -~~~~~~~l~~l~ 719 (740)
.+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 345667777665
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=1.7e-06 Score=83.83 Aligned_cols=80 Identities=24% Similarity=0.308 Sum_probs=64.7
Q ss_pred ccCCCccEEEcccCcccc--cChhhhhcCCCCcEEECcCCcCcccCCccccCCC--CCCEEeCCCCccCccCC-------
Q 045323 614 QPLHSMSGLDLSCNKLIG--EIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMK--QVESLDLSYNNLNGKIP------- 682 (740)
Q Consensus 614 ~~~~~L~~L~ls~n~l~~--~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~--~L~~L~Ls~n~l~~~~~------- 682 (740)
..+++|+.|+|++|++.+ .+|..+..+++|+.|+|++|++++. ..+..++ +|++|+|++|++.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 356799999999999987 4456778999999999999999965 2334444 99999999999997665
Q ss_pred cccccCCcCceee
Q 045323 683 PRLIELNALAVFS 695 (740)
Q Consensus 683 ~~l~~l~~L~~L~ 695 (740)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2466788998876
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.06 E-value=6.8e-07 Score=80.02 Aligned_cols=84 Identities=10% Similarity=0.061 Sum_probs=68.3
Q ss_pred CccEEEcccCcccccChhhhhcCCCCcEEECcCCc-CcccCCccccCC----CCCCEEeCCCCc-cCccCCcccccCCcC
Q 045323 618 SMSGLDLSCNKLIGEIPLQIGELSRIHTLNLSHNN-LTGESPVTFSHM----KQVESLDLSYNN-LNGKIPPRLIELNAL 691 (740)
Q Consensus 618 ~L~~L~ls~n~l~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~l~~l----~~L~~L~Ls~n~-l~~~~~~~l~~l~~L 691 (740)
.|+.||+++|.++......+.++++|++|+|++|. +++..-..+..+ ++|++|+|++|. |++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 78999999999887777778899999999999994 887665566654 479999999985 876545567788999
Q ss_pred ceeeccCccc
Q 045323 692 AVFSVAFNNL 701 (740)
Q Consensus 692 ~~L~ls~N~l 701 (740)
+.|++++++-
T Consensus 142 ~~L~L~~c~~ 151 (176)
T 3e4g_A 142 KYLFLSDLPG 151 (176)
T ss_dssp CEEEEESCTT
T ss_pred CEEECCCCCC
Confidence 9999999863
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.87 E-value=1.6e-06 Score=77.57 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=73.1
Q ss_pred hhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCc-cCccCCcccccC----CcCceeeccCcc-cccCCCC
Q 045323 634 PLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNN-LNGKIPPRLIEL----NALAVFSVAFNN-LSGKTPD 707 (740)
Q Consensus 634 ~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~~~~l~~l----~~L~~L~ls~N~-l~~~~~~ 707 (740)
|.....-..|++|||+++.+++..-..+..+++|++|+|++|. |++..-..+..+ ++|+.|+|++|. ++..--.
T Consensus 54 P~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~ 133 (176)
T 3e4g_A 54 PTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133 (176)
T ss_dssp CCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH
T ss_pred CcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH
Confidence 4333334689999999999998888888999999999999995 775444445553 479999999996 6544334
Q ss_pred cccCCCCccccccccCCCCCC
Q 045323 708 RVAQFGTFEEDSYEGNPFLCG 728 (740)
Q Consensus 708 ~~~~~~~l~~l~l~~Np~~c~ 728 (740)
.++.+++|++|+++++|..=+
T Consensus 134 ~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 134 ALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HGGGCTTCCEEEEESCTTCCC
T ss_pred HHhcCCCCCEEECCCCCCCCc
Confidence 457789999999999876544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.33 E-value=4e-05 Score=69.92 Aligned_cols=110 Identities=6% Similarity=0.058 Sum_probs=77.8
Q ss_pred ccCCCccEEEcccC-ccccc----ChhhhhcCCCCcEEECcCCcCcccC----CccccCCCCCCEEeCCCCccCcc----
Q 045323 614 QPLHSMSGLDLSCN-KLIGE----IPLQIGELSRIHTLNLSHNNLTGES----PVTFSHMKQVESLDLSYNNLNGK---- 680 (740)
Q Consensus 614 ~~~~~L~~L~ls~n-~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~~----~~~l~~l~~L~~L~Ls~n~l~~~---- 680 (740)
..-+.|++|+++++ ++... +.+.+..-+.|++|+|++|++.+.. .+.+..-+.|++|+|++|.|...
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 34568999999986 66432 4556677799999999999998643 44555678899999999999842
Q ss_pred CCcccccCCcCceeeccCccc---cc----CCCCcccCCCCccccccccC
Q 045323 681 IPPRLIELNALAVFSVAFNNL---SG----KTPDRVAQFGTFEEDSYEGN 723 (740)
Q Consensus 681 ~~~~l~~l~~L~~L~ls~N~l---~~----~~~~~~~~~~~l~~l~l~~N 723 (740)
+.+.+...+.|+.|+|++|.. .. .+.+.+..-++|++++++.|
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 445566677899999987633 21 12233444578888888754
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.28 E-value=6.3e-05 Score=68.64 Aligned_cols=88 Identities=14% Similarity=0.151 Sum_probs=68.6
Q ss_pred cCCCccEEEcccCccccc----ChhhhhcCCCCcEEECcCCcCccc----CCccccCCCCCCEEeCCCCc---cCc----
Q 045323 615 PLHSMSGLDLSCNKLIGE----IPLQIGELSRIHTLNLSHNNLTGE----SPVTFSHMKQVESLDLSYNN---LNG---- 679 (740)
Q Consensus 615 ~~~~L~~L~ls~n~l~~~----~~~~l~~l~~L~~L~L~~N~l~~~----~~~~l~~l~~L~~L~Ls~n~---l~~---- 679 (740)
.-+.|+.|+|++|++... +.+.+..-+.|++|+|++|.|+.. +.+++..-+.|++|+|++|. +..
T Consensus 68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 345899999999999654 345566779999999999999964 44567777889999999764 342
Q ss_pred cCCcccccCCcCceeeccCcccc
Q 045323 680 KIPPRLIELNALAVFSVAFNNLS 702 (740)
Q Consensus 680 ~~~~~l~~l~~L~~L~ls~N~l~ 702 (740)
.+.+.+...+.|+.|+++.|.+.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCCHH
T ss_pred HHHHHHHhCCCcCeEeccCCCcc
Confidence 24566777899999999988754
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.89 E-value=0.0018 Score=55.14 Aligned_cols=57 Identities=21% Similarity=0.247 Sum_probs=46.8
Q ss_pred cEEEcccCccc-ccChhhhhcCCCCcEEECcCCcCcccCCccccCCCCCCEEeCCCCccC
Q 045323 620 SGLDLSCNKLI-GEIPLQIGELSRIHTLNLSHNNLTGESPVTFSHMKQVESLDLSYNNLN 678 (740)
Q Consensus 620 ~~L~ls~n~l~-~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~l~~l~~L~~L~Ls~n~l~ 678 (740)
..++.+++.++ ..+|..+. .+|++|+|++|+|+.+.+..|..+++|+.|+|++|++.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 47889998886 35665432 57999999999999888888899999999999999886
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=61.70 E-value=9.5 Score=29.98 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=21.9
Q ss_pred CCCcCCCCCCCCCEEeCCCCcCcCCchhhhcCCCCCCEEECCC
Q 045323 421 NIPTRLGNLSFLDAIMMPNNRLEGPIPSAFCQLRHLEILDLSR 463 (740)
Q Consensus 421 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~ 463 (740)
....+|.+|.+|+++.|..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33445555555555555543 2334445555666666665544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=59.76 E-value=19 Score=28.22 Aligned_cols=45 Identities=9% Similarity=0.176 Sum_probs=25.7
Q ss_pred ceecCCcCCCCCCCCceEeCCCcccccCCCcCCCCCCCCCEEeCCC
Q 045323 394 FIGDIPKTLSNCSALQGLYISDNNISGNIPTRLGNLSFLDAIMMPN 439 (740)
Q Consensus 394 ~~~~~~~~l~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~ 439 (740)
++.+...+|.+|.+|+.+.+..+ ++.....+|.+|.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666543 3334455666666666666654
No 167
>2juy_A Neopetrosiamide A; amphipathic, antitumor protein; HET: SME; NMR {Neopetrosia SP}
Probab=43.92 E-value=5.2 Score=21.42 Aligned_cols=17 Identities=29% Similarity=0.694 Sum_probs=12.0
Q ss_pred CCCCC---CcCCCCCCCCCC
Q 045323 723 NPFLC---GQPLLKSCNENG 739 (740)
Q Consensus 723 Np~~c---~~~l~~~~~~~~ 739 (740)
+|+-| +|-.+.+||+.|
T Consensus 3 cpfgcalvdcgpnrpcrdtg 22 (28)
T 2juy_A 3 CPFGCALVDCGPNRPCRDTG 22 (28)
T ss_dssp CSSSSTTTTSCTTSCCEEEE
T ss_pred ccccceEeecCCCCcccccC
Confidence 45555 677888998866
Done!