Query 045324
Match_columns 394
No_of_seqs 233 out of 721
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:31:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045324.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045324hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2wnf_A CMP-N-acetylneuraminate 100.0 4.8E-55 1.7E-59 428.4 13.6 232 116-384 49-298 (298)
2 1ro7_A Alpha-2,3/8-sialyltrans 99.8 6.5E-21 2.2E-25 183.3 9.5 176 172-375 2-204 (259)
3 2p2v_A Alpha-2,3-sialyltransfe 99.8 1.2E-20 4.1E-25 183.8 8.8 183 167-375 15-221 (288)
4 2wqq_A Alpha-2,3-/2,8-sialyltr 99.8 7.5E-20 2.6E-24 178.6 6.5 181 172-375 2-204 (291)
5 1jdm_A Sarcolipin; helix, memb 18.1 1.3E+02 0.0043 19.2 3.2 21 1-21 1-21 (31)
6 2ook_A Hypothetical protein; s 12.6 80 0.0028 25.9 1.7 17 168-184 82-98 (127)
7 2q3l_A Uncharacterized protein 9.9 85 0.0029 25.7 0.8 15 169-183 83-97 (126)
8 3ixv_A Hemocyanin AA6 chain; H 7.6 3.5E+02 0.012 28.6 4.6 72 66-137 294-372 (626)
9 1i96_V Translation initiation 7.6 69 0.0023 25.4 -0.6 32 187-221 6-37 (89)
10 1jb0_M Photosystem 1 reaction 7.1 3.7E+02 0.013 17.2 2.8 18 8-25 8-25 (31)
No 1
>2wnf_A CMP-N-acetylneuraminate-beta-galactosamide-alpha- 2,3-sialyltransferase; glycosyltransferase, disulfide bond, golgi apparatus, glycoprotein; HET: CG3 A2G GAL; 1.25A {Sus scrofa} PDB: 2wnb_A* 2wml_A
Probab=100.00 E-value=4.8e-55 Score=428.42 Aligned_cols=232 Identities=30% Similarity=0.484 Sum_probs=169.3
Q ss_pred ccCCchhHHhHHHhhhhchhhHhhhcchhHHHHHHHHhccCCccccCCCCCCCCCcceEEEEcCCCcCCCCCCCcccccc
Q 045324 116 TLRSPMFYRYWLDFRRNLNDWARKKKFQSDVMNDLVRLVKHSIDKHNGLIGSDKKYESCAVVGNSGILLNSNYGDLIDSH 195 (394)
Q Consensus 116 ~l~~~~~~~~Wl~~~~~~~~W~rl~~~~p~v~~~l~~~i~~p~~~~~~~~~~~~~c~rCAVVGNSGIL~gS~~G~eIDsh 195 (394)
..+++++++||+.++...+. .....+++++++++|.+.+.. ......+|++||||||||||+||+||+|||+|
T Consensus 49 ~~~~~~~~~~w~~l~~~~~~-----~~~~~v~~~l~~~lP~~~~~~--~~~~~~~~~~CAVVGNsGiL~~S~~G~eIDs~ 121 (298)
T 2wnf_A 49 AHLEEDTYKWWLRLQREKQP-----NNLNDTIRELFQVVPGNVDPL--LEKRLVSCRRCAVVGNSGNLKESYYGPQIDSH 121 (298)
T ss_dssp CCCCHHHHHHHHHHHCCSSC-----CCHHHHHHHHTTTSCSCCCTT--TTGGGCSCCEEEEECCBGGGTTCCCHHHHHTS
T ss_pred CCCCHHHHHHHHhccccccc-----ccHHHHHHHHHHhCCCccccc--cccccCCCCeEEEECCccccCCCCccccccch
Confidence 34567889999999987542 234568899999998864311 11234799999999999999999999999999
Q ss_pred chhhhcCcccccccccccCCCcccccccchhhhhhhccCCccccCCCCCCCeEEEEecccchhhhhhhcCC---------
Q 045324 196 EMVIRLNNARIERYEQHVGSKTSLSFVNSNILHLCARREGCFCHPYGENVPMIMYICQPMHFLDYTRCNGS--------- 266 (394)
Q Consensus 196 D~VIR~N~AP~~GfE~DVGsKTtl~~~n~sil~~~~~~~~~~~~~y~~~v~~vl~i~~P~~~ld~~~~~~~--------- 266 (394)
|||||||+|||+|||+|||+|||++++|++++. .+++++.++ ..|++..++.|....
T Consensus 122 D~ViR~N~aP~~gye~DVG~KTt~~~~n~~s~~-----------~~~~~~~~v---~~~~~~~~~~w~~~~~~~~~~~~~ 187 (298)
T 2wnf_A 122 DFVLRMNKAPTEGFEADVGSKTTHHFVYPESFR-----------ELAQEVSMI---LVPFKTTDLEWVISATTTGRISHT 187 (298)
T ss_dssp SEEEEETTCCCTTCHHHHCSCCSEEEEBTTBCC-----------CCCTTCEEE---ECCSSHHHHHHHHHHTTTCCCCBS
T ss_pred hheeccCcCCcCcccccCccCceeEEecccccc-----------ccCCCceEE---EeecCccchhhhhHhhcCCcccch
Confidence 999999999999999999999999999988642 345554444 357776666553110
Q ss_pred CC-CCcee--cCCccchhhhhhhhhcccchhhhhhhhhhhhhccccCCCccccChHHHHHHHHhhcCCeEEEeeeecCCC
Q 045324 267 HK-APLLI--TDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWGSAHEGSLFHYSSGMQAVMLSLGICDKVSIFGFGKSAA 343 (394)
Q Consensus 267 ~k-~~~~i--~~p~f~~l~~ri~~y~~~~~Fl~~t~~~~~~W~~~~~~~~~~pSTG~lav~lAL~lCDeV~vYGFg~~~~ 343 (394)
+. .+..+ ....+.+++|++++| ..+.|...+ ..+||||++++++||++||||+||||+++..
T Consensus 188 ~~~~~~~~~~~~~~v~i~~P~~~~~------------~~~~w~~~~---~~~pSTG~~~v~lAl~~CDeV~lYGF~~d~~ 252 (298)
T 2wnf_A 188 YVPVPAKIKVKKEKILIYHPAFIKY------------VFDRWLQGH---GRYPSTGILSVIFSLHICDEVDLYGFGADSK 252 (298)
T ss_dssp SSBCCSCCCCCGGGEEEBCHHHHHH------------HHHHTSTTC---SSSCCHHHHHHHHHHHHCSEEEEESCSCCTT
T ss_pred hhhhhHHhhccCCeEEEeCHHHHHH------------HHHHHHHhC---CCCCchhHHHHHHHHHhCCEEEEeeeccCCC
Confidence 00 00000 011233445555544 234576544 2479999999999999999999999999864
Q ss_pred -CcCcccCCCCC-----CCCCCChHHHHHHHHHHHHcCCCcccccCC
Q 045324 344 -AKHHYHTNQKA-----ELHLHDYNAEYVFYHDLVKNQRAVPFISDK 384 (394)
Q Consensus 344 -~~~HYye~~~~-----~~~~Hd~~~E~~~l~~L~~~~~~~~fit~k 384 (394)
.+|||||+.+. ..+.|+|+.|++++++||++ +.+++.+|+
T Consensus 253 ~~~~HYyd~~~~~~~~~~~~~H~~~~E~~~~~~Lh~~-G~i~l~~g~ 298 (298)
T 2wnf_A 253 GNWHHYWENNPSAGAFRKTGVHDGDFESNVTTILASI-NKIRIFKGR 298 (298)
T ss_dssp SCCCBTTC-----------CCSCHHHHHHHHHHHHHT-TSSEEECCC
T ss_pred CCceecccCccccccccCCCCCCcHHHHHHHHHHHHC-CCEEEEeCC
Confidence 47999998754 24689999999999999988 788887764
No 2
>1ro7_A Alpha-2,3/8-sialyltransferase; mixed alpha/beta, rossmann fold; HET: CSF; 1.80A {Campylobacter jejuni} SCOP: c.130.1.1 PDB: 1ro8_A* 2drj_A* 2x62_A* 2x61_A* 2x63_A*
Probab=99.83 E-value=6.5e-21 Score=183.28 Aligned_cols=176 Identities=14% Similarity=0.160 Sum_probs=107.2
Q ss_pred ceEEEEcCCCcCCCCCCCccccccchhhhcCcccccc-cccccCCCcccccccchhhhhhhccCCccc--cCCCCCCCeE
Q 045324 172 ESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIER-YEQHVGSKTSLSFVNSNILHLCARREGCFC--HPYGENVPMI 248 (394)
Q Consensus 172 ~rCAVVGNSGIL~gS~~G~eIDshD~VIR~N~AP~~G-fE~DVGsKTtl~~~n~sil~~~~~~~~~~~--~~y~~~v~~v 248 (394)
++|+||||||+|++..++. ||+.++|||||.++..+ | |||+||+++++||+++....+.-.... ..|+-+ .
T Consensus 2 k~c~ivGNGpsL~~id~~~-l~~~~~v~r~N~~~~~d~y--~VG~kt~~v~~NPsv~~~~~~~l~~~~~~~~~~~~---~ 75 (259)
T 1ro7_A 2 KKVIIAGNGPSLKEIDYSR-LPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYETE---L 75 (259)
T ss_dssp CEEEEECCSGGGGCCCTTS-CCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCEEE---E
T ss_pred ceEEEEeCcHHHhhhhhhh-hccCCeEEEEeChhhcCcc--ccccccceEEECcHHHHHHHHHHHHHHhhcccccc---e
Confidence 5899999999999888885 88877799999997764 5 599999999999998754221100000 011111 1
Q ss_pred EEEec---ccchhhhhhhcCC--CCCCceecCCccchhhhhhhhhcccchhhhhhhhhhhhhc---cccCCCccccChHH
Q 045324 249 MYICQ---PMHFLDYTRCNGS--HKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWG---SAHEGSLFHYSSGM 320 (394)
Q Consensus 249 l~i~~---P~~~ld~~~~~~~--~k~~~~i~~p~f~~l~~ri~~y~~~~~Fl~~t~~~~~~W~---~~~~~~~~~pSTG~ 320 (394)
+.|. |............ +...+ . ..| .+++. ....|. ........++|||+
T Consensus 76 -i~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--------~~~----~~~~~---l~~f~~~~~~~~~~~~~r~stGl 134 (259)
T 1ro7_A 76 -IMCSNYNQAHLENENFVKTFYDYFPDA-----H--------LGY----DFFKQ---LKDFNAYFKFHEIYFNQRITSGV 134 (259)
T ss_dssp -EEECCCSCTTTSCHHHHHTHHHHSTTC-----E--------ETH----HHHTT---SHHHHHHHHHHHHHHCCCCCHHH
T ss_pred -EeeecccccccchHHHHHHHHHhcCcc-----c--------cCc----hhhhH---HHHHHHhhhhcccccccCcCHHH
Confidence 1121 1100000000000 00000 0 000 11111 111232 11111134789999
Q ss_pred HHHHHHhhc-CCeEEEeee--------ecCCC-------CcCcccCCCCCCCCCCChHHHHHHHHHHHHcC
Q 045324 321 QAVMLSLGI-CDKVSIFGF--------GKSAA-------AKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQ 375 (394)
Q Consensus 321 lav~lAL~l-CDeV~vYGF--------g~~~~-------~~~HYye~~~~~~~~Hd~~~E~~~l~~L~~~~ 375 (394)
+|+.+|+.+ ||||++||| ++... ..+|||++... ...|+|+.|++.++.||+.+
T Consensus 135 ~~~~lA~~lGckeIyLyG~D~~~~~~~~~Y~~~~~~~~~i~~hy~d~~~~-~~~H~m~~Ef~al~~Lh~~g 204 (259)
T 1ro7_A 135 YMCAVAIALGYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNSH-YIGHSKNTDIKALEFLEKTY 204 (259)
T ss_dssp HHHHHHHHHTCCEEEEESCCTTTTSSCCSSCCCCHHHHHHCGGGGSSCCC-CTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEeEcCCCCCCCcCCCCCcccccccCcccccccCC-ccccCchHHHHHHHHHHHhC
Confidence 999999999 999999999 66432 35888887653 35799999999999999987
No 3
>2p2v_A Alpha-2,3-sialyltransferase; mixed alpha-beta; HET: CSF; 1.85A {Campylobacter jejuni} PDB: 2p56_A
Probab=99.82 E-value=1.2e-20 Score=183.84 Aligned_cols=183 Identities=15% Similarity=0.162 Sum_probs=113.7
Q ss_pred CCCCcceEEEEcCCCcCCCCCCCccccccchhhhcCccccc-ccccccCCCcccccccchhhhhhhccCCcc--ccCCCC
Q 045324 167 SDKKYESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIE-RYEQHVGSKTSLSFVNSNILHLCARREGCF--CHPYGE 243 (394)
Q Consensus 167 ~~~~c~rCAVVGNSGIL~gS~~G~eIDshD~VIR~N~AP~~-GfE~DVGsKTtl~~~n~sil~~~~~~~~~~--~~~y~~ 243 (394)
.....++|+||||||+|+++. |.+||+.|+|||||.++.. .| +||++|.++++||+.+......-... ...|+-
T Consensus 15 ~~~~~~~c~IvGNGPSL~~~~-~~~i~~~~~v~rvN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~l~~~~~y~~ 91 (288)
T 2p2v_A 15 VSKNMQNIIIAGNGPSLKNIN-YKRLPREYDVFRCNQFYFEDKY--YLGKKIKAVFFNPGVFLQQYHTAKQLILKNEYEI 91 (288)
T ss_dssp CCTTCCEEEEECCSGGGGGCC-GGGSCSSCEEEEETTGGGCSBC--TTCSEESEEEECGGGHHHHHHHHHHHHHTTSCEE
T ss_pred ccCCCCeEEEEecChhhcCCC-chhhccCCEEEEEcChHhcCcc--cccccceEEEECcHHHHHHHHHHHhhhhcccccc
Confidence 345688999999999999998 9999999999999999997 47 49999999999999875432100000 011211
Q ss_pred CCCeEEEEecccchhhhhhhcCCCCCCceecCCccchhhhhhhhhcc--cc--hhhhhhhhhhhhhcc---ccCCCcccc
Q 045324 244 NVPMIMYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYS--LK--GFVEETGKSLEEWGS---AHEGSLFHY 316 (394)
Q Consensus 244 ~v~~vl~i~~P~~~ld~~~~~~~~k~~~~i~~p~f~~l~~ri~~y~~--~~--~Fl~~t~~~~~~W~~---~~~~~~~~p 316 (394)
.. + + | +...... .+.+.. ...+...+. .. +++. .....|.. ..+....++
T Consensus 92 ~~--i-~-~-~~~~~~~--------------~~~~~~-~~~L~~~~~~~~~~~~~l~---~l~~fw~~~~~~~~~~~~r~ 148 (288)
T 2p2v_A 92 KN--I-F-C-STFNLPF--------------IESNDF-LHQFYNFFPDAKLGYEVIE---NLKEFYAYIKYNEIYFNKRI 148 (288)
T ss_dssp CC--E-E-E-CCCCCTT--------------TSCHHH-HHHHHHHCTTCEETHHHHT---TSHHHHHHHHHHHHHHCCCC
T ss_pred cE--E-E-e-eeccccc--------------chHHHH-HHHHHHhCCCceEeehhhh---HHHHHhhhhhhcccccccCc
Confidence 11 1 1 1 1110000 000000 000000000 00 1111 12233431 111123479
Q ss_pred ChHHHHHHHHhhc-CCeEEEeeeecC-CCCcCcccCCCCC------------CCCCCChHHHHHHHHHHHHcC
Q 045324 317 SSGMQAVMLSLGI-CDKVSIFGFGKS-AAAKHHYHTNQKA------------ELHLHDYNAEYVFYHDLVKNQ 375 (394)
Q Consensus 317 STG~lav~lAL~l-CDeV~vYGFg~~-~~~~~HYye~~~~------------~~~~Hd~~~E~~~l~~L~~~~ 375 (394)
|||++|+.+|+.+ ||||++|||... ...+|||++.... ....|+|+.|+..++.||+++
T Consensus 149 StGl~~l~iA~~lGckeIyLyGfD~~~~~~~yhYd~~~~~~~~~~~~~~~~k~~~~H~m~~e~~al~~Lh~~g 221 (288)
T 2p2v_A 149 TSGVYMCAIAIALGYKTIYLCGIDFYEGDVIYPFEAMSTNIKTIFPGIKDFKPSNCHSKEYDIEALKLLKSIY 221 (288)
T ss_dssp CHHHHHHHHHHHHTCCEEEEESCCTTCSSCCCSSCSSCHHHHHHSCC--CCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHcCCCEEEEeeecCCCCCCcccccCccccccccccccccccCCcccCCHHHHHHHHHHHHhc
Confidence 9999999999999 999999999643 3467997665331 246899999999999999995
No 4
>2wqq_A Alpha-2,3-/2,8-sialyltransferase; GTA, cstii, glycosyltransfer; HET: CSF; 2.25A {Campylobacter jejuni}
Probab=99.78 E-value=7.5e-20 Score=178.59 Aligned_cols=181 Identities=14% Similarity=0.143 Sum_probs=104.5
Q ss_pred ceEEEEcCCCcCCCCCCCccccccchhhhcCccccc-ccccccCCCcccccccchhhhhhhccCCcc--ccCCCCCCCeE
Q 045324 172 ESCAVVGNSGILLNSNYGDLIDSHEMVIRLNNARIE-RYEQHVGSKTSLSFVNSNILHLCARREGCF--CHPYGENVPMI 248 (394)
Q Consensus 172 ~rCAVVGNSGIL~gS~~G~eIDshD~VIR~N~AP~~-GfE~DVGsKTtl~~~n~sil~~~~~~~~~~--~~~y~~~v~~v 248 (394)
++|+||||||+|.++. |.+||++|+|||||.++.. .| +||++|.++++|++.+....+.-... ...|+ ...+
T Consensus 2 ~~c~IvGNGpSL~~~~-~~~i~~~~~vi~vN~~~~~~~~--~~g~~~~yv~~dp~~~~~~~~~l~~~~~~~~~~--~~~i 76 (291)
T 2wqq_A 2 KKVIIAGNGPSLKEID-YSRLPNDFDVFRCNQFYFEDKY--YLGKKCKAVFYNPSLFFEQYYTLKHLIQNQEYE--TELI 76 (291)
T ss_dssp CEEEEECCSGGGGCCC-GGGCCSSEEEEEETTGGGCSEE--TTCSEEEEEEECGGGHHHHHHHHHHHHHTTSCE--EEEE
T ss_pred CcEEEEeCchhhccCc-hhhhccCCeEEEEcCccccccc--ccccCccEEEEchHHHHHHHHHHHHHHhccccc--ccee
Confidence 5899999999999997 9999999999999999996 46 49999999999998765322100000 00111 0101
Q ss_pred EEEecccchhhhhhhcCCCCCCceecCCccchhhhhhhhhcccchhhhhhhhhhhhhc---cccCCCccccChHHHHHHH
Q 045324 249 MYICQPMHFLDYTRCNGSHKAPLLITDPRFDMLCSRIVKYYSLKGFVEETGKSLEEWG---SAHEGSLFHYSSGMQAVML 325 (394)
Q Consensus 249 l~i~~P~~~ld~~~~~~~~k~~~~i~~p~f~~l~~ri~~y~~~~~Fl~~t~~~~~~W~---~~~~~~~~~pSTG~lav~l 325 (394)
.+........ +..... -.+......+..++ +++.. ....|. ........+||||++|+.+
T Consensus 77 --~~~~~~~~~~-------~~~~~~--~~l~~~~~~v~~~~---~~l~~---l~~~~~~~~~~~~~~~~r~stGl~~lsl 139 (291)
T 2wqq_A 77 --MCSNYNQAHL-------ENENFV--KTFYDYFPDAHLGY---DFFKQ---LKDFNAYFKFHEIQFNQRITSGVYMCAV 139 (291)
T ss_dssp --EECCCSCTTT-------SCHHHH--HTHHHHSTTCEETH---HHHTT---CHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred --eeeeccchhh-------HHHHHH--HHHHhhcCceeccH---hhhhh---HHHHhhhhhccccccccCccHHHHHHHH
Confidence 1211100000 000000 00000000000010 11111 112232 1110012369999999999
Q ss_pred Hhhc-CCeEEEeee--------ecCC-------CCcCcccCCCCCCCCCCChHHHHHHHHHHHHcC
Q 045324 326 SLGI-CDKVSIFGF--------GKSA-------AAKHHYHTNQKAELHLHDYNAEYVFYHDLVKNQ 375 (394)
Q Consensus 326 AL~l-CDeV~vYGF--------g~~~-------~~~~HYye~~~~~~~~Hd~~~E~~~l~~L~~~~ 375 (394)
|+.+ |+||++||| ++.. ..++|||++.. ....|.|+.|++.++.||+++
T Consensus 140 A~~lGckeIyLyGfD~~~~~~~~~y~~~~~~~~~i~~hy~d~~~-~~~~H~mp~ef~al~~Lh~~g 204 (291)
T 2wqq_A 140 AIALGYKEIYLSGIDFYQNGSSYAFDTKQKNLLKLAPNFKNDNS-HYIGHSKNTDIKALEFLEKTY 204 (291)
T ss_dssp HHHTTCCEEEEESCCCC-----CCSCCCCHHHHHHCGGGC--------CCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEeecCCCCCCCCcCcCCccccccCCCccccccC-CCCCcCCHHHHHHHHHHHHhc
Confidence 9999 999999999 5432 12478888763 245799999999999999997
No 5
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=18.14 E-value=1.3e+02 Score=19.24 Aligned_cols=21 Identities=24% Similarity=0.382 Sum_probs=13.4
Q ss_pred CCCCCchhHHHHHHHHHHHHH
Q 045324 1 MKRPLRPVFTILLLTILAVTL 21 (394)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~ 21 (394)
|.|+.|-+|.=.-++..+++|
T Consensus 1 m~~n~qELf~NFt~vLI~vlL 21 (31)
T 1jdm_A 1 MGINTRELFLNFTIVLITVIL 21 (31)
T ss_dssp CCSCSSSSHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH
Confidence 889999998744444333433
No 6
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=12.65 E-value=80 Score=25.90 Aligned_cols=17 Identities=24% Similarity=0.433 Sum_probs=14.1
Q ss_pred CCCcceEEEEcCCCcCC
Q 045324 168 DKKYESCAVVGNSGILL 184 (394)
Q Consensus 168 ~~~c~rCAVVGNSGIL~ 184 (394)
...+.+|||||+..-+.
T Consensus 82 ~~~~~RiAvV~d~~W~~ 98 (127)
T 2ook_A 82 KSEFERVAILGNKDWQE 98 (127)
T ss_dssp SCCEEEEEEECCSSCCT
T ss_pred HhcCCEEEEEcChHHHH
Confidence 46799999999998763
No 7
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=9.85 E-value=85 Score=25.72 Aligned_cols=15 Identities=20% Similarity=0.605 Sum_probs=12.1
Q ss_pred CCcceEEEEcCCCcC
Q 045324 169 KKYESCAVVGNSGIL 183 (394)
Q Consensus 169 ~~c~rCAVVGNSGIL 183 (394)
..+.+|||||+..-+
T Consensus 83 ~~~~RiAvV~d~~W~ 97 (126)
T 2q3l_A 83 KEFKRVAIIGQGELQ 97 (126)
T ss_dssp GGEEEEEEECCSHHH
T ss_pred hcCCEEEEEcChHHH
Confidence 458899999998644
No 8
>3ixv_A Hemocyanin AA6 chain; HC, phenolxoidase activity, tyrosinase (TY), catecholoxidase (CO), enzyme, SDS, cryo-EM, single particle analysis; 6.80A {Androctonus australis} PDB: 3ixw_A
Probab=7.60 E-value=3.5e+02 Score=28.61 Aligned_cols=72 Identities=19% Similarity=0.354 Sum_probs=45.0
Q ss_pred ChhhHHHHHHHhcCCCCCCCc--ccccccc-ccc---cccccccc-ccCCCCCCCccccCCchhHHhHHHhhhhchhhH
Q 045324 66 EEKSKQEIERLLEGNFDSPGR--HRTFASW-RRF---HHDARSRL-SSSSSSSGISMTLRSPMFYRYWLDFRRNLNDWA 137 (394)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~---~~~~~~~~-~~~~~~~~~p~~l~~~~~~~~Wl~~~~~~~~W~ 137 (394)
+++--.-+-+|+||+.+|..+ |..+-.| |.. .||...+- ..-+.....-..|++|-+|+|+..+..-+.+|.
T Consensus 294 ~~~gIdiLG~iie~s~~S~n~~~YG~lhn~~h~~l~~~~dp~~k~~~~pgvm~~~~TalRDP~FYrlhk~Id~~f~~yK 372 (626)
T 3ixv_A 294 IEHGTDILGDIIESSDESKNVEYYGSLHNWGHVMMANITDPDHRFQENPGVMSDTSTSLRDPIFYRWHRFIDNIFQEHK 372 (626)
T ss_dssp TTTHHHHHHHHHHTCTTCSCHHHHCCHHHHHHHHHHTSSCSSCSSCCCCCGGGCTTTGGGSTHHHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHhccCCCCChhhccCHHHHHHHHhcCCcCcCCccccCCcccccccccccCHHHHHHHHHHHHHHHHHH
Confidence 445556667889999877752 2333334 331 34433221 122334556678999999999999998877773
No 9
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=7.58 E-value=69 Score=25.42 Aligned_cols=32 Identities=22% Similarity=0.443 Sum_probs=21.9
Q ss_pred CCCccccccchhhhcCcccccccccccCCCccccc
Q 045324 187 NYGDLIDSHEMVIRLNNARIERYEQHVGSKTSLSF 221 (394)
Q Consensus 187 ~~G~eIDshD~VIR~N~AP~~GfE~DVGsKTtl~~ 221 (394)
.+.+.||.|||=++++.|-- |-++ |.|.-+++
T Consensus 6 kl~p~Id~hD~~~K~k~a~~--FL~~-GdKVKvti 37 (89)
T 1i96_V 6 KFRVKIDEHDYQTKLGHIKR--FLQE-GHKVKVTI 37 (89)
T ss_pred EecCCcCcchHHHHHHHHHH--HHHC-CCEEEEEE
Confidence 45788999999999998743 4433 55554443
No 10
>1jb0_M Photosystem 1 reaction centre subunit XII; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.19.1 PDB: 3pcq_M*
Probab=7.10 E-value=3.7e+02 Score=17.24 Aligned_cols=18 Identities=33% Similarity=0.774 Sum_probs=12.2
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 045324 8 VFTILLLTILAVTLIFRI 25 (394)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~ 25 (394)
.|.+|+++...+.|.+|-
T Consensus 8 i~iAL~~Al~~~iLA~rL 25 (31)
T 1jb0_M 8 VYVALVIALLPAVLAFRL 25 (31)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456677777777777774
Done!