BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045325
         (412 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3H2G|A Chain A, Crystal Structure Of A Rice Cell Wall Degrading Esterase
           Lipa From Xanthomonas Oryzae
 pdb|3H2J|A Chain A, Crystal Structure Of The Rice Cell Wall Degrading Esterase
           Lipa From Xanthomonas Oryzae
 pdb|3H2K|A Chain A, Crystal Structure Of A Ligand-Bound Form Of The Rice Cell
           Wall Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 30.8 bits (68), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 333 MRVLESVIAEMKTPVFYLNITRMTDYRQDGHPSIYRQREI 372
           MR   SV+  +KTP+       ++ Y Q GH ++  QREI
Sbjct: 152 MRAARSVLQHLKTPLS--GKVMLSGYSQGGHTAMATQREI 189


>pdb|3H2I|A Chain A, Crystal Structure Of N228w Mutant Of The Rice Cell Wall
           Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 333 MRVLESVIAEMKTPVFYLNITRMTDYRQDGHPSIYRQREI 372
           MR   SV+  +KTP+       ++ Y Q GH ++  QREI
Sbjct: 152 MRAARSVLQHLKTPLS--GKVMLSGYSQGGHTAMATQREI 189


>pdb|3H2H|A Chain A, Crystal Structure Of G231f Mutant Of The Rice Cell Wall
           Degrading Esterase Lipa From Xanthomonas Oryzae
          Length = 397

 Score = 30.8 bits (68), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)

Query: 333 MRVLESVIAEMKTPVFYLNITRMTDYRQDGHPSIYRQREI 372
           MR   SV+  +KTP+       ++ Y Q GH ++  QREI
Sbjct: 152 MRAARSVLQHLKTPLS--GKVMLSGYSQGGHTAMATQREI 189


>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
           Vulgaris At 1.9 Angstroms Resolution
          Length = 1021

 Score = 28.5 bits (62), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 63/171 (36%), Gaps = 15/171 (8%)

Query: 102 RPDSDYLKYKWRPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDSLKD 161
           RPD    +++    G   P F     L  L       VG+S   N+ +++V A   S  +
Sbjct: 493 RPDGTAWRHEGNYPGYSFPAFKNASQLIYLLRDTPFSVGESGWNNLKKAMVSAWIYS--N 550

Query: 162 KSRVYEVSGRQRFRT-------QGFYSFKFRDYMCSIDFIKSPFLVQESKFSDKSGAR-G 213
                 ++GR  F +       QG+Y             + S +L    K  ++S A  G
Sbjct: 551 PEVGLPLAGRHPFNSPSLKSVAQGYYWLAMSAKSSPDKTLASIYLAISDKTQNESTAIFG 610

Query: 214 ETLR-LDMIQGSSTKYGDADIIIFNTGHWWTHHKTFKGYNYFQEGSHVYNK 263
           ET+    + QG     G A    F    W     T K YN     S +YNK
Sbjct: 611 ETITPASLPQGFYAFNGGA----FGIHRWQDKMVTLKAYNTNVWSSEIYNK 657


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.437 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,078,907
Number of Sequences: 62578
Number of extensions: 571340
Number of successful extensions: 1027
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1026
Number of HSP's gapped (non-prelim): 5
length of query: 412
length of database: 14,973,337
effective HSP length: 101
effective length of query: 311
effective length of database: 8,652,959
effective search space: 2691070249
effective search space used: 2691070249
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)