BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045325
(412 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|A4D0V7|CPED1_HUMAN Cadherin-like and PC-esterase domain-containing protein 1 OS=Homo
sapiens GN=CPED1 PE=2 SV=1
Length = 1026
Score = 40.8 bits (94), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/108 (24%), Positives = 51/108 (47%), Gaps = 19/108 (17%)
Query: 59 NRIKKLSSCDIFNGQWVVDNSEPLYKPGSCPFIDEAFNCFKNGRPDSDYLKYKWRPIGCQ 118
+ +K+ S D+ GQW+V +C N D+ + W+P CQ
Sbjct: 713 SELKRCPSGDM-KGQWIVP----------------CLSCSDNR--TCDWREITWQPHNCQ 753
Query: 119 LPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDSLKDKSRVY 166
++ + L G++++F+GDS NR + L+ L ++L++ +V+
Sbjct: 754 YGVLTKPQLQQCLGGRKILFIGDSTNRGIMYYLIERLNETLQEWQKVH 801
>sp|Q1LW89|CASD1_DANRE CAS1 domain-containing protein 1 OS=Danio rerio GN=casd1 PE=2 SV=2
Length = 781
Score = 38.5 bits (88), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 112 WRPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDSLKDKSRVYE 167
W+P GC L ++ + LR KR+ FVGDS R ++ S + + +K+ +E
Sbjct: 64 WQPYGCMLHKYKSTEAKFCLREKRIAFVGDSRIRQLFYSFIKMMNPEVKEVGNKHE 119
>sp|Q54X77|CETNB_DICDI Centrin-B OS=Dictyostelium discoideum GN=cenB PE=3 SV=1
Length = 150
Score = 36.2 bits (82), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 30/46 (65%), Gaps = 6/46 (13%)
Query: 91 IDEAFNCFK--NGRPDSDYLKYKWRPIGCQLPRFDGGKMLEMLRGK 134
I E+F+ FK NG+ D+D +KY ++ +GC++ + LE+++ K
Sbjct: 17 IKESFDMFKSDNGKLDNDQIKYAFKALGCEITE----ETLELIKKK 58
>sp|Q2G9P6|MIAB_NOVAD (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Novosphingobium aromaticivorans (strain DSM 12444)
GN=miaB PE=3 SV=1
Length = 443
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 110 YKWRPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDSLKDKSRVYEVS 169
++ + GCQ+ +DG +M E+L + + GD + ++ C +R+ K +VY
Sbjct: 14 FRVKSFGCQMNVYDGERMAELLAAQGMSAAGDGDDADLVVLNTCHIRE--KATEKVYSDI 71
Query: 170 GRQR 173
GR R
Sbjct: 72 GRLR 75
>sp|Q08BN9|NXPE3_DANRE NXPE family member 3 OS=Danio rerio GN=nxpe3 PE=2 SV=1
Length = 566
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Query: 103 PDSDYLKYKWRPIGCQLPR-FDGGKML-EMLRGKRLVFVGDSLNRNMWESLV 152
P Y + WRP+ +PR F+ ++ + LRGK L GDS R +E L+
Sbjct: 323 PSGYYYQGSWRPLSGVVPRQFNTSSLINQCLRGKMLYMYGDSTVRQWYEYLI 374
>sp|Q319I4|MIAB_PROM9 (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Prochlorococcus marinus (strain MIT 9312) GN=miaB
PE=3 SV=1
Length = 463
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 99 KNGRPDSDYLKYKWRPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDS 158
K + DS Y GCQ+ + D +M L D LN ++ C +RD+
Sbjct: 10 KEFQKDSTTRSYWITTFGCQMNKADSERMAGTLEKMGYTRADDELNADLVLYNTCTIRDN 69
Query: 159 LKDKSRVYEVSGRQRFRTQGFYSFKF 184
+ K VY GRQ R S K
Sbjct: 70 AEHK--VYSFLGRQAKRKHKIPSLKL 93
>sp|Q9H1Q7|PED1A_HUMAN PC-esterase domain-containing protein 1A OS=Homo sapiens GN=PCED1A
PE=1 SV=1
Length = 454
Score = 32.7 bits (73), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 113 RPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCAL-RDSLKDKSRV 165
RP+ + F ++ ++L K +V +GDS+ R +++ LV L +DSL +++
Sbjct: 12 RPLRSDMVHFQASEVQQLLHNKFVVILGDSIQRAVYKDLVLLLQKDSLLTAAQL 65
>sp|Q2N950|MIAB_ERYLH (Dimethylallyl)adenosine tRNA methylthiotransferase MiaB
OS=Erythrobacter litoralis (strain HTCC2594) GN=miaB
PE=3 SV=1
Length = 446
Score = 32.0 bits (71), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 102 RPDSDYLKYKWRPIGCQLPRFDGGKMLEMLRGKRLVFVGDSLNRNMWESLVCALRDSLKD 161
+P Y+ + GCQ+ +DG +M EML K + + + ++ C +R+ D
Sbjct: 2 KPTHSPKTYRVKSFGCQMNVYDGERMAEMLDEKGIEPAPEGEDADLVVLNTCHIREKAVD 61
Query: 162 KSRVYEVSGR 171
K VY GR
Sbjct: 62 K--VYSDIGR 69
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 159,451,983
Number of Sequences: 539616
Number of extensions: 6823660
Number of successful extensions: 12691
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 12686
Number of HSP's gapped (non-prelim): 14
length of query: 412
length of database: 191,569,459
effective HSP length: 120
effective length of query: 292
effective length of database: 126,815,539
effective search space: 37030137388
effective search space used: 37030137388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)