Query 045327
Match_columns 162
No_of_seqs 181 out of 1136
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 12:09:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045327.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045327hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00018 AP2 DNA-binding domain 99.9 3E-22 6.6E-27 134.6 7.3 61 25-87 1-61 (61)
2 smart00380 AP2 DNA-binding dom 99.8 9.5E-21 2.1E-25 128.9 8.1 62 26-89 1-62 (64)
3 PHA00280 putative NHN endonucl 99.6 3.4E-15 7.3E-20 114.4 6.6 62 14-78 56-118 (121)
4 PF00847 AP2: AP2 domain; Int 99.2 1.6E-11 3.5E-16 80.5 4.7 52 25-76 1-56 (56)
5 PF08846 DUF1816: Domain of un 80.0 3.5 7.7E-05 28.8 4.0 42 37-78 9-50 (68)
6 PF13356 DUF4102: Domain of un 79.0 8.2 0.00018 27.0 5.8 37 37-73 36-74 (89)
7 PF14657 Integrase_AP2: AP2-li 78.2 7.1 0.00015 24.4 4.7 37 37-73 1-41 (46)
8 cd00801 INT_P4 Bacteriophage P 74.9 6.6 0.00014 32.5 5.0 39 35-73 9-49 (357)
9 PF05036 SPOR: Sporulation rel 58.8 13 0.00028 24.1 3.0 29 42-70 37-65 (76)
10 PRK09692 integrase; Provisiona 56.6 30 0.00064 30.3 5.7 37 30-66 33-75 (413)
11 PHA02601 int integrase; Provis 55.3 22 0.00048 29.8 4.5 44 29-73 2-46 (333)
12 PF08471 Ribonuc_red_2_N: Clas 55.1 12 0.00027 27.7 2.6 21 53-73 70-90 (93)
13 PF14112 DUF4284: Domain of un 47.4 13 0.00027 28.2 1.7 18 49-66 2-19 (122)
14 PF07494 Reg_prop: Two compone 42.9 20 0.00044 19.5 1.6 8 50-57 17-24 (24)
15 PLN00062 TATA-box-binding prot 36.8 1.6E+02 0.0035 23.8 6.7 49 23-74 32-81 (179)
16 cd04517 TLF TBP-like factors ( 35.0 1.4E+02 0.003 24.0 6.0 45 26-73 35-80 (174)
17 PF01182 Glucosamine_iso: Gluc 33.7 59 0.0013 26.1 3.7 36 54-89 95-145 (199)
18 PF00626 Gelsolin: Gelsolin re 30.0 89 0.0019 20.3 3.5 34 40-73 20-53 (76)
19 COG2185 Sbm Methylmalonyl-CoA 26.9 44 0.00095 26.5 1.8 30 37-66 30-59 (143)
20 cd08001 WGR_PARP1_like WGR dom 25.6 1.4E+02 0.0031 21.6 4.2 37 50-86 56-92 (104)
21 cd04518 TBP_archaea archaeal T 25.4 2.8E+02 0.006 22.3 6.2 49 23-74 32-81 (174)
22 PRK10927 essential cell divisi 25.4 95 0.0021 27.8 3.8 34 38-71 273-306 (319)
23 cd04516 TBP_eukaryotes eukaryo 24.6 3.5E+02 0.0076 21.7 6.7 49 23-74 32-81 (174)
24 PF00352 TBP: Transcription fa 24.3 2.1E+02 0.0046 19.8 4.8 47 24-73 35-82 (86)
25 PF10729 CedA: Cell division a 24.2 1.7E+02 0.0036 20.9 4.1 39 24-65 30-68 (80)
26 PTZ00285 glucosamine-6-phospha 23.5 1.1E+02 0.0023 25.5 3.6 34 54-87 109-151 (253)
27 PF12286 DUF3622: Protein of u 22.4 1.5E+02 0.0033 21.0 3.6 31 35-65 15-49 (71)
28 TIGR01198 pgl 6-phosphoglucono 21.4 1.1E+02 0.0024 25.2 3.3 30 58-87 103-147 (233)
29 cd00652 TBP_TLF TATA box bindi 21.1 3.6E+02 0.0077 21.5 6.1 48 23-73 32-80 (174)
30 PF06236 MelC1: Tyrosinase co- 20.0 50 0.0011 25.7 0.9 19 54-75 98-116 (125)
No 1
>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein). In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.
Probab=99.87 E-value=3e-22 Score=134.64 Aligned_cols=61 Identities=51% Similarity=0.922 Sum_probs=57.0
Q ss_pred CceeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 045327 25 RKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSM 87 (162)
Q Consensus 25 S~yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~ 87 (162)
|+|+||+++++|||+|+|+++..++++|||+|+|+|||+.|||.+++.++|.++ .+|||++
T Consensus 1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a--~~Nf~~~ 61 (61)
T cd00018 1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSA--VLNFPDS 61 (61)
T ss_pred CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCcc--ccCCCCC
Confidence 789999999899999999999545599999999999999999999999999999 9999974
No 2
>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs.
Probab=99.84 E-value=9.5e-21 Score=128.88 Aligned_cols=62 Identities=50% Similarity=0.935 Sum_probs=57.6
Q ss_pred ceeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCC
Q 045327 26 KYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSMLP 89 (162)
Q Consensus 26 ~yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~~~ 89 (162)
+|+||+++++|||+|+|+++..++++|||+|+|+||||.|||.+++.++|+++ .+|||....
T Consensus 1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a--~~Nf~~~~y 62 (64)
T smart00380 1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSA--RLNFPNSLY 62 (64)
T ss_pred CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCcc--ccCCCCccC
Confidence 59999998899999999997666799999999999999999999999999999 999998654
No 3
>PHA00280 putative NHN endonuclease
Probab=99.58 E-value=3.4e-15 Score=114.36 Aligned_cols=62 Identities=16% Similarity=0.138 Sum_probs=55.8
Q ss_pred CCCcccCCCCCCceeEEEECC-CCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCC
Q 045327 14 GSNIEENAAHQRKYKGIRRRK-WGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRS 78 (162)
Q Consensus 14 ~~N~~~~~~~~S~yrGVr~r~-~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a 78 (162)
..|+...++|+|||+||+|.+ .|||+|+|.+.++ +++||+|+|+|+|+.||+ ++.++||++|
T Consensus 56 ~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~~gK--~~~lG~f~~~e~A~~a~~-~~~~lhGeFa 118 (121)
T PHA00280 56 SWNMKTPKSNTSGLKGLSWSKEREMWRGTVTAEGK--QHNFRSRDLLEVVAWIYR-TRRELHGQFA 118 (121)
T ss_pred hcccCCCCCCCCCCCeeEEecCCCeEEEEEEECCE--EEEcCCCCCHHHHHHHHH-HHHHHhhccc
Confidence 456667789999999999874 7999999999988 999999999999999997 7789999998
No 4
>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes. Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.
Probab=99.22 E-value=1.6e-11 Score=80.46 Aligned_cols=52 Identities=33% Similarity=0.458 Sum_probs=45.3
Q ss_pred CceeEEEECC-CCcEEEEEecC---CCCceeeeecCCcHHHHHHHHHHHHHHhcCC
Q 045327 25 RKYKGIRRRK-WGKWVSEIRVP---GSQERLWLGSYATPEAAAMAHDVAFYCLRRP 76 (162)
Q Consensus 25 S~yrGVr~r~-~GkW~AeIr~~---~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~ 76 (162)
|+|+||++.+ .++|+|.|++. +++++++||.|+++|||+++|+.++..++|+
T Consensus 1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e 56 (56)
T PF00847_consen 1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE 56 (56)
T ss_dssp SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence 7899999875 79999999994 1136999999999999999999999999875
No 5
>PF08846 DUF1816: Domain of unknown function (DUF1816); InterPro: IPR014945 Q4C9H3 from SWISSPROT is associated with the IPR008213 from INTERPRO domain suggesting this protein could have a role in phycobilisomes.
Probab=80.04 E-value=3.5 Score=28.83 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcCCCC
Q 045327 37 KWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRRPRS 78 (162)
Q Consensus 37 kW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a 78 (162)
.|-++|.-..-+...|.|-|.|.+||..+..-....+-.+.+
T Consensus 9 aWWveI~T~~P~ctYyFGPF~s~~eA~~~~~gyieDL~~Ega 50 (68)
T PF08846_consen 9 AWWVEIETQNPNCTYYFGPFDSREEAEAALPGYIEDLESEGA 50 (68)
T ss_pred cEEEEEEcCCCCEEEEeCCcCCHHHHHHHhccHHHHHHhhCc
Confidence 577999887777789999999999999998777766655544
No 6
>PF13356 DUF4102: Domain of unknown function (DUF4102); PDB: 3JU0_A 3RMP_A 3JTZ_A 2KJ8_A.
Probab=78.95 E-value=8.2 Score=27.05 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.4
Q ss_pred cEEEEEecCCCCceeeeecCCc--HHHHHHHHHHHHHHh
Q 045327 37 KWVSEIRVPGSQERLWLGSYAT--PEAAAMAHDVAFYCL 73 (162)
Q Consensus 37 kW~AeIr~~~k~~ri~LGtf~T--~EeAA~AYD~aa~~~ 73 (162)
.|.-+.+.+++..++.||.|++ ..+|-.........+
T Consensus 36 t~~~r~~~~gk~~~~~lG~~p~~sl~~AR~~a~~~~~~~ 74 (89)
T PF13356_consen 36 TFYFRYRINGKRRRITLGRYPELSLAEAREKARELRALV 74 (89)
T ss_dssp EEEEEEEETTEEEEEEEEECTTS-HHHHHHHHHHHHHHH
T ss_pred EEEEEEEecceEEEeccCCCccCCHHHHHHHHHHHHHHH
Confidence 5999999999989999999986 555555544444333
No 7
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=78.17 E-value=7.1 Score=24.41 Aligned_cols=37 Identities=16% Similarity=0.130 Sum_probs=29.1
Q ss_pred cEEEEEe--c--CCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 37 KWVSEIR--V--PGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 37 kW~AeIr--~--~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
+|...|. . .|++.+++-+-|.|..||-.+...+...+
T Consensus 1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~ 41 (46)
T PF14657_consen 1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAEL 41 (46)
T ss_pred CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHH
Confidence 5777773 3 45667999999999999999988876655
No 8
>cd00801 INT_P4 Bacteriophage P4 integrase. P4-like integrases are found in temperate bacteriophages, integrative plasmids, pathogenicity and symbiosis islands, and other mobile genetic elements. They share the same fold in their catalytic domain and the overall reaction mechanism with the superfamily of DNA breaking-rejoining enzymes. The P4 integrase mediates integrative and excisive site-specific recombination between two sites, called attachment sites, located on the phage genome and the bacterial chromosome. The phage attachment site is often found adjacent to the integrase gene, while the host attachment sites are typically situated near tRNA genes.
Probab=74.92 E-value=6.6 Score=32.47 Aligned_cols=39 Identities=33% Similarity=0.405 Sum_probs=30.1
Q ss_pred CCcEEEEEecCCCCceeeeecCC--cHHHHHHHHHHHHHHh
Q 045327 35 WGKWVSEIRVPGSQERLWLGSYA--TPEAAAMAHDVAFYCL 73 (162)
Q Consensus 35 ~GkW~AeIr~~~k~~ri~LGtf~--T~EeAA~AYD~aa~~~ 73 (162)
.+.|..+++.++++.++.||+|+ |.++|....+.....+
T Consensus 9 ~~~~~~~~~~~g~~~~~~~g~~~~~~~~~A~~~~~~~~~~~ 49 (357)
T cd00801 9 SKSWRFRYRLAGKRKRLTLGSYPAVSLAEAREKADEARALL 49 (357)
T ss_pred CEEEEEEeccCCceeEEeCcCCCCCCHHHHHHHHHHHHHHH
Confidence 35799999999998899999996 6677776666654444
No 9
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=58.76 E-value=13 Score=24.09 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=21.2
Q ss_pred EecCCCCceeeeecCCcHHHHHHHHHHHH
Q 045327 42 IRVPGSQERLWLGSYATPEAAAMAHDVAF 70 (162)
Q Consensus 42 Ir~~~k~~ri~LGtf~T~EeAA~AYD~aa 70 (162)
+...+..-+|.+|.|+|.++|..+-+...
T Consensus 37 ~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 37 VSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 33333445899999999999988877654
No 10
>PRK09692 integrase; Provisional
Probab=56.57 E-value=30 Score=30.30 Aligned_cols=37 Identities=19% Similarity=0.270 Sum_probs=24.2
Q ss_pred EEECCCC--cEEEEEecC--CCCceeeeecCC--cHHHHHHHH
Q 045327 30 IRRRKWG--KWVSEIRVP--GSQERLWLGSYA--TPEAAAMAH 66 (162)
Q Consensus 30 Vr~r~~G--kW~AeIr~~--~k~~ri~LGtf~--T~EeAA~AY 66 (162)
|+-++.| .|..+.+.+ +++.++-||.|+ |..+|-.+-
T Consensus 33 l~v~~~G~k~~~~rY~~~~~gk~~~~~lG~yp~~sl~~AR~~a 75 (413)
T PRK09692 33 LLIKSSGSKIWQFRYYRPLTKTRAKKSFGPYPSVTLADARNYR 75 (413)
T ss_pred EEEECCCcEEEEEEEecCCCCceeeeeCCCCCCCCHHHHHHHH
Confidence 4444555 499998754 555568999999 565554433
No 11
>PHA02601 int integrase; Provisional
Probab=55.27 E-value=22 Score=29.75 Aligned_cols=44 Identities=27% Similarity=0.416 Sum_probs=28.1
Q ss_pred EEEECCCCcEEEEEecCC-CCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 29 GIRRRKWGKWVSEIRVPG-SQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 29 GVr~r~~GkW~AeIr~~~-k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
+|++.+.|+|.++|+..+ .++++. .+|.|..||-...+.....+
T Consensus 2 ~~~~~~~g~w~~~~~~~~~~g~r~~-~~f~tk~eA~~~~~~~~~~~ 46 (333)
T PHA02601 2 AVRKLKDGKWLCEIYPNGRDGKRIR-KRFATKGEALAFENYTMAEV 46 (333)
T ss_pred ceEEcCCCCEEEEEEECCCCCchhh-hhhcCHHHHHHHHHHHHHhc
Confidence 466667899999998642 112333 36999988876655544433
No 12
>PF08471 Ribonuc_red_2_N: Class II vitamin B12-dependent ribonucleotide reductase; InterPro: IPR013678 This domain is found to the N terminus of the ribonucleotide reductase barrel domain (IPR000788 from INTERPRO). It occurs in bacterial class II ribonucleotide reductase proteins which depend upon coenzyme B12 (deoxyadenosylcobalamine) []. ; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0050897 cobalt ion binding, 0055114 oxidation-reduction process
Probab=55.10 E-value=12 Score=27.68 Aligned_cols=21 Identities=38% Similarity=0.328 Sum_probs=18.6
Q ss_pred eecCCcHHHHHHHHHHHHHHh
Q 045327 53 LGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 53 LGtf~T~EeAA~AYD~aa~~~ 73 (162)
-|+|+|+|+|..=||..+..|
T Consensus 70 ~GYF~t~eDA~~FydEl~~mL 90 (93)
T PF08471_consen 70 GGYFATEEDAEAFYDELTYML 90 (93)
T ss_pred CCCcCCHHHHHHHHHHHHHHH
Confidence 399999999999999987765
No 13
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=47.36 E-value=13 Score=28.20 Aligned_cols=18 Identities=11% Similarity=0.521 Sum_probs=13.7
Q ss_pred ceeeeecCCcHHHHHHHH
Q 045327 49 ERLWLGSYATPEAAAMAH 66 (162)
Q Consensus 49 ~ri~LGtf~T~EeAA~AY 66 (162)
..||||+|.|.++=..=.
T Consensus 2 VsiWiG~f~s~~el~~Y~ 19 (122)
T PF14112_consen 2 VSIWIGNFKSEDELEEYF 19 (122)
T ss_pred eEEEEecCCCHHHHHHHh
Confidence 369999999987765544
No 14
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=42.86 E-value=20 Score=19.46 Aligned_cols=8 Identities=50% Similarity=1.535 Sum_probs=6.9
Q ss_pred eeeeecCC
Q 045327 50 RLWLGSYA 57 (162)
Q Consensus 50 ri~LGtf~ 57 (162)
+||+||+.
T Consensus 17 ~lWigT~~ 24 (24)
T PF07494_consen 17 NLWIGTYN 24 (24)
T ss_dssp CEEEEETS
T ss_pred CEEEEeCC
Confidence 89999974
No 15
>PLN00062 TATA-box-binding protein; Provisional
Probab=36.83 E-value=1.6e+02 Score=23.82 Aligned_cols=49 Identities=10% Similarity=0.102 Sum_probs=37.8
Q ss_pred CCCceeEEEEC-CCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhc
Q 045327 23 HQRKYKGIRRR-KWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLR 74 (162)
Q Consensus 23 ~~S~yrGVr~r-~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~ 74 (162)
+..+|-||..| ..-+-.+-|...|| +.+=-..+.|+|..|.+..+..+.
T Consensus 32 ePe~fpgli~Rl~~Pk~t~lIF~SGK---iviTGaks~e~a~~a~~~~~~~L~ 81 (179)
T PLN00062 32 NPKRFAAVIMRIREPKTTALIFASGK---MVCTGAKSEHDSKLAARKYARIIQ 81 (179)
T ss_pred CCccCcEEEEEeCCCcEEEEEECCCe---EEEEecCCHHHHHHHHHHHHHHHH
Confidence 44679998876 45677888888877 555556889999999999888773
No 16
>cd04517 TLF TBP-like factors (TLF; also called TLP, TRF, TRP), which are found in most metazoans. TLFs and TBPs have well-conserved core domains; however, they only share about 60% similarity. TLFs, like TBPs, interact with TFIIA and TFIIB, which are part of the basal transcription machinery. Yet, in contrast to TBPs, TLFs seem not to interact with the TATA-box and even have a negative effect on the transcription of TATA-containing promoters. Recent results indicate that TLFs are involved in the transcription via TATA-less promoters.
Probab=35.01 E-value=1.4e+02 Score=23.99 Aligned_cols=45 Identities=18% Similarity=0.187 Sum_probs=37.2
Q ss_pred ceeEEEEC-CCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 26 KYKGIRRR-KWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 26 ~yrGVr~r-~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
+|.||..| ..-+-.+-|...|| +.+=-..+.|+|..|.+..+..+
T Consensus 35 ~fpgli~R~~~Pk~t~lIF~sGK---iviTGaks~~~~~~a~~~~~~~l 80 (174)
T cd04517 35 RYPKVTMRLREPRATASVWSSGK---ITITGATSEEEAKQAARRAARLL 80 (174)
T ss_pred CCCEEEEEecCCcEEEEEECCCe---EEEEccCCHHHHHHHHHHHHHHH
Confidence 89999877 45677888988877 66666789999999999988877
No 17
>PF01182 Glucosamine_iso: Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase; InterPro: IPR006148 This domain is characteristic of the enzymes 6-phosphogluconolactonase (3.1.1.31 from EC), Glucosamine-6-phosphate isomerase (3.5.99.6 from EC), and Galactosamine-6-phosphate isomerase. 6-Phosphogluconolactonase is the enzyme responsible for the hydrolysis of 6-phosphogluconolactone to 6-phosphogluconate, the second step in the pentose phosphate pathway. Glucosamine-6-phosphate isomerase (or Glucosamine 6-phosphate deaminase) is the enzyme responsible for the conversion of D-glucosamine 6-phosphate into D-fructose 6-phosphate []. It is the last specific step in the pathway for N-acetylglucosamine (GlcNAC) utilization in bacteria such as Escherichia coli (gene nagB) or in fungi such as Candida albicans (gene NAG1).; GO: 0005975 carbohydrate metabolic process; PDB: 3CSS_A 3CH7_A 1Y89_B 3TX2_A 2BKX_B 2BKV_B 3E15_B 1HOR_B 1JT9_A 1HOT_A ....
Probab=33.69 E-value=59 Score=26.08 Aligned_cols=36 Identities=22% Similarity=0.218 Sum_probs=26.0
Q ss_pred ecCCcHHHHHHHHHHHHHHhc---------------CCCCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCLR---------------RPRSLDGLNFPSMLP 89 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~~---------------G~~a~~~lNFp~~~~ 89 (162)
|.-.+++++++.|+.....+. |++.++..|||....
T Consensus 95 ~~~~~~~~~~~~y~~~l~~~~~~~~~p~~Dl~lLG~G~DGH~aslfPg~~~ 145 (199)
T PF01182_consen 95 GEADDPEEAAERYEQELASLGGEAGFPGFDLVLLGMGEDGHTASLFPGSPA 145 (199)
T ss_dssp TTTSSHHHHHHHHHHHHHHHSSSEECESBSEEEEE--TTS-BTTB-TTCHT
T ss_pred CCCCCHHHHHHHHHHHHHHhccccCCCceeEEEeccccCCCeeccCCCCcc
Confidence 445789999999999887764 567778899998543
No 18
>PF00626 Gelsolin: Gelsolin repeat; InterPro: IPR007123 Gelsolin is a cytoplasmic, calcium-regulated, actin-modulating protein that binds to the barbed ends of actin filaments, preventing monomer exchange (end-blocking or capping) []. It can promote nucleation (the assembly of monomers into filaments), as well as sever existing filaments. In addition, this protein binds with high affinity to fibronectin. Plasma gelsolin and cytoplasmic gelsolin are derived from a single gene by alternate initiation sites and differential splicing. Sequence comparisons indicate an evolutionary relationship between gelsolin, villin, fragmin and severin []. Six large repeating segments occur in gelsolin and villin, and 3 similar segments in severin and fragmin. While the multiple repeats have yet to be related to any known function of the actin-severing proteins, the superfamily appears to have evolved from an ancestral sequence of 120 to 130 amino acid residues [].; PDB: 3FG6_F 1RGI_G 2FGH_A 1D0N_B 3EGD_B 2NUP_B 2NUT_B 3EGX_B 1JHW_A 1J72_A ....
Probab=30.00 E-value=89 Score=20.27 Aligned_cols=34 Identities=29% Similarity=0.368 Sum_probs=28.5
Q ss_pred EEEecCCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 40 SEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 40 AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
+-|-+.+..-.+|+|.-.+..+-..|.+.|....
T Consensus 20 ~yIld~~~~i~vW~G~~~~~~e~~~a~~~a~~~~ 53 (76)
T PF00626_consen 20 CYILDCGYEIFVWVGKKSSPEEKAFAAQLAQELL 53 (76)
T ss_dssp EEEEEESSEEEEEEHTTSHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCcEEEEeccCCHHHHHHHHHHHHHhh
Confidence 6677777777999999999999999988887665
No 19
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=26.93 E-value=44 Score=26.49 Aligned_cols=30 Identities=30% Similarity=0.337 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCceeeeecCCcHHHHHHHH
Q 045327 37 KWVSEIRVPGSQERLWLGSYATPEAAAMAH 66 (162)
Q Consensus 37 kW~AeIr~~~k~~ri~LGtf~T~EeAA~AY 66 (162)
|..+++.....=.-|++|.|.|+||++++-
T Consensus 30 kvia~~l~d~GfeVi~~g~~~tp~e~v~aA 59 (143)
T COG2185 30 KVIARALADAGFEVINLGLFQTPEEAVRAA 59 (143)
T ss_pred HHHHHHHHhCCceEEecCCcCCHHHHHHHH
Confidence 334444444444578999999999998874
No 20
>cd08001 WGR_PARP1_like WGR domain of poly(ADP-ribose) polymerase 1 and similar proteins. The WGR domain is found in a variety of eukaryotic poly(ADP-ribose) polymerases (PARPs). It has been called WGR after the most conserved central motif of the domain. The domain typically occurs together with a catalytic PARP domain, and is between 70 and 80 residues in length. It has been proposed to function as a nucleic acid binding domain. PARPs catalyze the NAD(+)-dependent synthesis of ADP-ribose polymers and their addition to various nuclear proteins. Higher eukaryotes contain several PARPs and and there may be up to 17 human PARP-like proteins, with three of them (PARP-1, PARP-2, and PARP-3) containing a WGR domain. The synthesis of poly-ADP-ribose requires multiple enzymatic activities for initiation, trans-ADP-ribosylation, elongation, branching, and release of the polymer from the enzyme. This subfamily is composed of vertebrate PARP-1 and similar proteins, including Arabidopsis thaliana
Probab=25.61 E-value=1.4e+02 Score=21.55 Aligned_cols=37 Identities=19% Similarity=0.109 Sum_probs=27.2
Q ss_pred eeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 045327 50 RLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPS 86 (162)
Q Consensus 50 ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~ 86 (162)
..-+-.|.+.++|..+++......-|..=....+|+.
T Consensus 56 q~~~~~~~~~~~A~~~F~k~f~~KTgn~w~~r~~f~k 92 (104)
T cd08001 56 GNKLEEFSSLEEAKMAFEELYEEKTGNDFENRKNFKK 92 (104)
T ss_pred ceEccCCCCHHHHHHHHHHHHHHHhCCCCccccCCcc
Confidence 4556789999999999999888877754323456654
No 21
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=25.40 E-value=2.8e+02 Score=22.29 Aligned_cols=49 Identities=16% Similarity=0.089 Sum_probs=37.9
Q ss_pred CCCceeEEEEC-CCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhc
Q 045327 23 HQRKYKGIRRR-KWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLR 74 (162)
Q Consensus 23 ~~S~yrGVr~r-~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~ 74 (162)
+..+|.||..| ..-+-.+-|...|| +.+=-..+.|+|..|-+..+..+.
T Consensus 32 ~P~~fpgli~Rl~~Pk~t~lIF~SGK---iv~tGaks~~~a~~a~~~~~~~L~ 81 (174)
T cd04518 32 NPDQFPGLVYRLEDPKIAALIFRSGK---MVCTGAKSVEDLHRAVKEIIKKLK 81 (174)
T ss_pred CCCcCcEEEEEccCCcEEEEEECCCe---EEEEccCCHHHHHHHHHHHHHHHH
Confidence 45789998877 34577788887776 555556899999999999888774
No 22
>PRK10927 essential cell division protein FtsN; Provisional
Probab=25.35 E-value=95 Score=27.77 Aligned_cols=34 Identities=18% Similarity=0.146 Sum_probs=25.8
Q ss_pred EEEEEecCCCCceeeeecCCcHHHHHHHHHHHHH
Q 045327 38 WVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFY 71 (162)
Q Consensus 38 W~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~ 71 (162)
+.|+|...+.-.||.||-|.+.++|-++.+...-
T Consensus 273 ~~A~I~~~g~~~RVrVGPf~sr~eAe~a~~rLk~ 306 (319)
T PRK10927 273 FDSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 306 (319)
T ss_pred CeeEEccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4566655555579999999999999999777543
No 23
>cd04516 TBP_eukaryotes eukaryotic TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=24.56 E-value=3.5e+02 Score=21.70 Aligned_cols=49 Identities=10% Similarity=0.110 Sum_probs=36.3
Q ss_pred CCCceeEEEEC-CCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhc
Q 045327 23 HQRKYKGIRRR-KWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLR 74 (162)
Q Consensus 23 ~~S~yrGVr~r-~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~ 74 (162)
+..+|-||..| ..-+-.+-|...|| +.+=-=.+.|+|..|.+..+..+.
T Consensus 32 ePe~fpgli~Rl~~Pk~t~lIF~SGK---iviTGaks~e~a~~a~~~i~~~L~ 81 (174)
T cd04516 32 NPKRFAAVIMRIREPKTTALIFSSGK---MVCTGAKSEDDSKLAARKYARIIQ 81 (174)
T ss_pred CCccCcEEEEEeCCCcEEEEEECCCe---EEEEecCCHHHHHHHHHHHHHHHH
Confidence 44688998866 45677888888887 444334688999999999888773
No 24
>PF00352 TBP: Transcription factor TFIID (or TATA-binding protein, TBP); InterPro: IPR000814 The TATA-box binding protein (TBP) is required for the initiation of transcription by RNA polymerases I, II and III, from promoters with or without a TATA box [, ]. TBP associates with a host of factors, including the general transcription factors TFIIA, -B, -D, -E, and -H, to form huge multi-subunit pre-initiation complexes on the core promoter. Through its association with different transcription factors, TBP can initiate transcription from different RNA polymerases. There are several related TBPs, including TBP-like (TBPL) proteins []. The C-terminal core of TBP (~180 residues) is highly conserved and contains two 77-amino acid repeats that produce a saddle-shaped structure that straddles the DNA; this region binds to the TATA box and interacts with transcription factors and regulatory proteins []. By contrast, the N-terminal region varies in both length and sequence.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0006367 transcription initiation from RNA polymerase II promoter; PDB: 1D3U_A 1PCZ_B 1AIS_A 1NGM_A 1TBP_A 1TBA_B 1YTB_A 1RM1_A 1YTF_A 1NH2_A ....
Probab=24.27 E-value=2.1e+02 Score=19.80 Aligned_cols=47 Identities=21% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCceeEEEEC-CCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 24 QRKYKGIRRR-KWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 24 ~S~yrGVr~r-~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
..+|.||..| ..-+-..-|...|+ -+..| -.+.|++..|.+.....+
T Consensus 35 Pe~fpgl~~r~~~p~~t~~IF~sGk--i~itG-aks~~~~~~a~~~i~~~L 82 (86)
T PF00352_consen 35 PERFPGLIYRLRNPKATVLIFSSGK--IVITG-AKSEEEAKKAIEKILPIL 82 (86)
T ss_dssp TTTESSEEEEETTTTEEEEEETTSE--EEEEE-ESSHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEeecCCcEEEEEEcCCE--EEEEe-cCCHHHHHHHHHHHHHHH
Confidence 3478898766 34567777877776 44444 578999999998876655
No 25
>PF10729 CedA: Cell division activator CedA; InterPro: IPR019666 CedA is made up of four antiparallel beta-strands and an alpha-helix. It activates cell division by inhibiting chromosome over-replication. This is mediated by binding to dsDNA via the beta-sheet [, ]. ; GO: 0003677 DNA binding, 0051301 cell division; PDB: 2BN8_A 2D35_A.
Probab=24.16 E-value=1.7e+02 Score=20.89 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=24.9
Q ss_pred CCceeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHH
Q 045327 24 QRKYKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMA 65 (162)
Q Consensus 24 ~S~yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~A 65 (162)
--+||-| |--.|||+|.|.....- .---.|..+|.|-+.
T Consensus 30 ~dgfrdv-w~lrgkyvafvl~ge~f--~rsp~fs~pesaqrw 68 (80)
T PF10729_consen 30 MDGFRDV-WQLRGKYVAFVLMGEHF--RRSPAFSVPESAQRW 68 (80)
T ss_dssp TTTECCE-CCCCCEEEEEEESSS-E--EE---BSSHHHHHHH
T ss_pred cccccce-eeeccceEEEEEecchh--ccCCCcCCcHHHHHH
Confidence 3578888 44459999999876652 223568888877665
No 26
>PTZ00285 glucosamine-6-phosphate isomerase; Provisional
Probab=23.49 E-value=1.1e+02 Score=25.49 Aligned_cols=34 Identities=12% Similarity=0.056 Sum_probs=25.9
Q ss_pred ecCCcHHHHHHHHHHHHHHh---------cCCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCL---------RRPRSLDGLNFPSM 87 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~---------~G~~a~~~lNFp~~ 87 (162)
|.-.++++++..|+.....+ -|++.++..|||..
T Consensus 109 ~~~~~~~~~~~~y~~~i~~~~~~Dl~lLG~G~DGH~AslfP~~ 151 (253)
T PTZ00285 109 GTAPDLEEECRRYEEKIRAVGGIDLFLAGIGTDGHIAFNEPGS 151 (253)
T ss_pred CCCcCHHHHHHHHHHHHHHhCCCcEEEeCCCCCCceeecCCCC
Confidence 33346788999999877655 27788888999986
No 27
>PF12286 DUF3622: Protein of unknown function (DUF3622); InterPro: IPR022069 This family of proteins is found in bacteria. Proteins in this family are typically between 72 and 107 amino acids in length. There is a conserved VSK sequence motif.
Probab=22.40 E-value=1.5e+02 Score=20.98 Aligned_cols=31 Identities=16% Similarity=0.258 Sum_probs=19.6
Q ss_pred CCcEEEEEecCCCCceeee----ecCCcHHHHHHH
Q 045327 35 WGKWVSEIRVPGSQERLWL----GSYATPEAAAMA 65 (162)
Q Consensus 35 ~GkW~AeIr~~~k~~ri~L----Gtf~T~EeAA~A 65 (162)
.+.|.|||...-...+.-+ --|+|+++|-.-
T Consensus 15 ~~~W~aEItR~vTsrkTvVSK~~~GF~SEaeAq~W 49 (71)
T PF12286_consen 15 RNGWTAEITRRVTSRKTVVSKRQDGFASEAEAQAW 49 (71)
T ss_pred CCceeeeeeeeecCceeEEEecccCcccHHHHHHH
Confidence 4889999986443222211 458998887544
No 28
>TIGR01198 pgl 6-phosphogluconolactonase. This enzyme of the pentose phosphate pathway is often found as a part of a multifunctional protein with
Probab=21.41 E-value=1.1e+02 Score=25.16 Aligned_cols=30 Identities=20% Similarity=0.130 Sum_probs=23.8
Q ss_pred cHHHHHHHHHHHHHHhc---------------CCCCCCCCCCCCC
Q 045327 58 TPEAAAMAHDVAFYCLR---------------RPRSLDGLNFPSM 87 (162)
Q Consensus 58 T~EeAA~AYD~aa~~~~---------------G~~a~~~lNFp~~ 87 (162)
++++++..|+.....+. |+++++..|||..
T Consensus 103 ~~~~~a~~y~~~i~~~~~~~~~p~fDl~lLGmG~DGHtASlFPg~ 147 (233)
T TIGR01198 103 DIEEAAELYEQELAAAFQPIVFPVFDLLLLGMGPDGHTASLFPHT 147 (233)
T ss_pred CHHHHHHHHHHHHHHhhcccCCCcccEEEECCcCCccceeCCCCC
Confidence 58899999998776553 5677789999984
No 29
>cd00652 TBP_TLF TATA box binding protein (TBP): Present in archaea and eukaryotes, TBPs are transcription factors that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA. New members of the TBP family, called TBP-like proteins (TBLP, TLF, TLP) or TBP-related factors (TRF1, TRF2,TRP), are similar to the core domain of TBPs, with identical or chemically similar amino acids at many
Probab=21.12 E-value=3.6e+02 Score=21.51 Aligned_cols=48 Identities=19% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCceeEEEECC-CCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 23 HQRKYKGIRRRK-WGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 23 ~~S~yrGVr~r~-~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
+..+|.||..|- .-+-.+-|...|| +.+=--.+.|+|..|.+..+..+
T Consensus 32 ePe~fpgli~R~~~P~~t~lIf~sGK---ivitGaks~~~~~~a~~~~~~~L 80 (174)
T cd00652 32 NPKRFPGVIMRLREPKTTALIFSSGK---MVITGAKSEEDAKLAARKYARIL 80 (174)
T ss_pred CCCccceEEEEcCCCcEEEEEECCCE---EEEEecCCHHHHHHHHHHHHHHH
Confidence 446899988773 4677788887776 55544578899999999988777
No 30
>PF06236 MelC1: Tyrosinase co-factor MelC1; InterPro: IPR010928 This family consists of several tyrosinase co-factor MELC1 proteins from a number of Streptomyces species. The melanin operon (melC) of Streptomyces antibioticus contains two genes, melC1 and melC2 (apotyrosinase). It is thought that MelC1 forms a transient binary complex with the downstream apotyrosinase MelC2 to facilitate the incorporation of copper ion and the secretion of tyrosinase indicating that MelC1 is a chaperone for the apotyrosinase MelC2 [].; GO: 0005507 copper ion binding, 0042438 melanin biosynthetic process; PDB: 1WX4_B 2ZWD_B 2ZMZ_B 1WX2_B 1WX5_D 3AWX_B 3AWS_B 2ZMY_B 3AX0_B 2ZWG_B ....
Probab=20.01 E-value=50 Score=25.71 Aligned_cols=19 Identities=47% Similarity=0.370 Sum_probs=14.1
Q ss_pred ecCCcHHHHHHHHHHHHHHhcC
Q 045327 54 GSYATPEAAAMAHDVAFYCLRR 75 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~~G 75 (162)
-.|+|+-+|+|| |...|.|
T Consensus 98 e~~pTpl~aARA---AVdeL~g 116 (125)
T PF06236_consen 98 ESYPTPLEAARA---AVDELGG 116 (125)
T ss_dssp EEESSHHHHHHH---HHHHHTT
T ss_pred cCCCCHHHHHHH---HHHHhCC
Confidence 568999999986 5555654
Done!