Query 045327
Match_columns 162
No_of_seqs 181 out of 1136
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 21:33:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045327.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045327hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gcc_A Ethylene responsive ele 99.9 4.9E-27 1.7E-31 159.9 6.6 62 25-88 1-63 (63)
2 3igm_B PF14_0633 protein; AP2 91.7 0.052 1.8E-06 37.8 1.1 28 21-48 2-30 (77)
3 3jtz_A Integrase; four strande 86.4 1.8 6.1E-05 30.0 5.9 44 30-73 28-75 (88)
4 1u3e_M HNH homing endonuclease 84.8 0.24 8.3E-06 37.9 0.7 38 27-67 109-146 (174)
5 3ju0_A Phage integrase; four s 78.9 4.2 0.00014 29.2 5.5 44 30-73 28-75 (108)
6 1z1b_A Integrase; protein-DNA 69.7 6.6 0.00023 31.3 5.1 41 29-73 15-55 (356)
7 1x60_A Sporulation-specific N- 54.8 10 0.00036 24.6 3.1 32 40-71 37-68 (79)
8 1uta_A FTSN, MSGA, cell divisi 52.7 15 0.00051 24.1 3.6 33 39-71 36-68 (81)
9 3lwd_A 6-phosphogluconolactona 46.7 20 0.00067 28.5 4.0 35 54-88 103-147 (226)
10 3hn6_A Glucosamine-6-phosphate 39.4 30 0.001 28.5 4.2 34 54-87 130-172 (289)
11 3tx2_A Probable 6-phosphogluco 38.8 30 0.001 27.7 4.0 31 57-87 119-165 (251)
12 3ico_A 6PGL, 6-phosphogluconol 38.8 30 0.001 28.1 4.0 31 57-87 135-181 (268)
13 3nwp_A 6-phosphogluconolactona 38.7 21 0.00071 28.4 3.0 34 54-87 107-150 (233)
14 3oc6_A 6-phosphogluconolactona 37.3 33 0.0011 27.4 4.0 31 57-87 119-163 (248)
15 1b69_A Protein (integrase); in 34.5 46 0.0016 22.3 3.7 30 23-52 8-38 (69)
16 3lhi_A Putative 6-phosphogluco 32.5 32 0.0011 27.1 3.2 33 55-87 105-148 (232)
17 1kcq_A Gelsolin, brevin, ADF, 31.4 56 0.0019 22.4 4.0 37 36-72 27-63 (104)
18 1svq_A Severin; actin-binding; 28.0 50 0.0017 23.2 3.3 34 39-72 40-73 (114)
19 1ne7_A Glucosamine-6-phosphate 27.6 72 0.0025 25.8 4.6 34 54-87 109-151 (289)
20 3eb9_A 6-phosphogluconolactona 25.1 69 0.0024 25.8 4.0 29 60-88 124-174 (266)
21 2ftc_I Mitochondrial ribosomal 23.7 1E+02 0.0036 22.2 4.4 37 37-75 79-115 (118)
No 1
>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A
Probab=99.94 E-value=4.9e-27 Score=159.86 Aligned_cols=62 Identities=45% Similarity=0.889 Sum_probs=57.7
Q ss_pred CceeEEEECCCCcEEEEEecCCC-CceeeeecCCcHHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Q 045327 25 RKYKGIRRRKWGKWVSEIRVPGS-QERLWLGSYATPEAAAMAHDVAFYCLRRPRSLDGLNFPSML 88 (162)
Q Consensus 25 S~yrGVr~r~~GkW~AeIr~~~k-~~ri~LGtf~T~EeAA~AYD~aa~~~~G~~a~~~lNFp~~~ 88 (162)
.+||||++++||||+|+|+++.+ ++++|||||+|+||||+|||.|+++++|.++ ++|||+++
T Consensus 1 ~~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a--~~NFp~~~ 63 (63)
T 1gcc_A 1 KHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRA--LLNFPLRV 63 (63)
T ss_dssp CCCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCC--CCSSCTTC
T ss_pred CCcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCccc--ccCCCCcC
Confidence 37999999999999999999975 4799999999999999999999999999999 99999863
No 2
>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}
Probab=91.73 E-value=0.052 Score=37.84 Aligned_cols=28 Identities=18% Similarity=0.302 Sum_probs=22.9
Q ss_pred CCCCCceeEEEECC-CCcEEEEEecCCCC
Q 045327 21 AAHQRKYKGIRRRK-WGKWVSEIRVPGSQ 48 (162)
Q Consensus 21 ~~~~S~yrGVr~r~-~GkW~AeIr~~~k~ 48 (162)
....|+|+||+|.+ .+.|+|.-.+++++
T Consensus 2 ~~~~Sg~pGVsw~kR~~~WlA~W~e~g~r 30 (77)
T 3igm_B 2 SHMSSGYPGVSWNKRMCAWLAFFYDGASR 30 (77)
T ss_dssp --CCSSSTTEEEETTTTEEEEEEEETTEE
T ss_pred CCCCCCCCcEEeecCCceEEEEEecCCeE
Confidence 35789999999986 79999999988764
No 3
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=86.44 E-value=1.8 Score=30.01 Aligned_cols=44 Identities=23% Similarity=0.393 Sum_probs=33.2
Q ss_pred EEECCCC--cEEEEEecCCCCceeeeecCCc--HHHHHHHHHHHHHHh
Q 045327 30 IRRRKWG--KWVSEIRVPGSQERLWLGSYAT--PEAAAMAHDVAFYCL 73 (162)
Q Consensus 30 Vr~r~~G--kW~AeIr~~~k~~ri~LGtf~T--~EeAA~AYD~aa~~~ 73 (162)
|+-.+.| .|+-+.+..++..++-||.|+. .++|-..-+.+...+
T Consensus 28 L~V~psG~K~w~~ryr~~Gk~~~~~LG~yp~~sL~~AR~~a~~~r~~l 75 (88)
T 3jtz_A 28 LLVKPGGSRHWYLKYRISGKESRIALGAYPAISLSDARQQREGIRKML 75 (88)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred EEEecCCCEEEEEEEEeCCeEEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence 4445544 5999999999888999999984 777777766665554
No 4
>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1
Probab=84.75 E-value=0.24 Score=37.91 Aligned_cols=38 Identities=13% Similarity=-0.006 Sum_probs=28.1
Q ss_pred eeEEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHH
Q 045327 27 YKGIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHD 67 (162)
Q Consensus 27 yrGVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD 67 (162)
++||.+...++|.+.|... + .++||.|+|.+|||++|.
T Consensus 109 ~~g~~~~~~~k~~~vi~~~-~--~~~~~~f~s~~eAa~~~G 146 (174)
T 1u3e_M 109 SKAQQIAKIKNQKPIIVIS-P--DGIEKEYPSTKCACEELG 146 (174)
T ss_dssp HHHHHHHHHHTCCCEEEEC-T--TSCEEEESCHHHHHHHHT
T ss_pred eeeeeeccCCCCceEEEEc-C--CceEEeeCCHHHHHHHHC
Confidence 3455442235688888877 4 678999999999999964
No 5
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=78.85 E-value=4.2 Score=29.20 Aligned_cols=44 Identities=27% Similarity=0.248 Sum_probs=32.5
Q ss_pred EEECCCC--cEEEEEecCCCCceeeeecCCc--HHHHHHHHHHHHHHh
Q 045327 30 IRRRKWG--KWVSEIRVPGSQERLWLGSYAT--PEAAAMAHDVAFYCL 73 (162)
Q Consensus 30 Vr~r~~G--kW~AeIr~~~k~~ri~LGtf~T--~EeAA~AYD~aa~~~ 73 (162)
|+-.+.| .|+-+.+..++..++-||.|+. ..+|-..-+.+...+
T Consensus 28 L~V~psG~K~w~~rYr~~GK~~~~~LG~yp~~SLa~AR~~a~~~r~~l 75 (108)
T 3ju0_A 28 LLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVSLADARQRRDEAKKLL 75 (108)
T ss_dssp EEECTTSCEEEEEEEEETTEEEEEEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCCEEEEEEEEEcCceEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 4444544 4999999999888999999985 677776666655544
No 6
>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*
Probab=69.68 E-value=6.6 Score=31.26 Aligned_cols=41 Identities=20% Similarity=0.084 Sum_probs=29.8
Q ss_pred EEEECCCCcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHh
Q 045327 29 GIRRRKWGKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCL 73 (162)
Q Consensus 29 GVr~r~~GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~ 73 (162)
||++++.|.|..++...|+ ++.+|. |..||......+...+
T Consensus 15 ~v~~~~~g~~~~r~~~~gk--~~~~g~--t~~eA~~~a~~~~~~~ 55 (356)
T 1z1b_A 15 NLYIRNNGYYCYRDPRTGK--EFGLGR--DRRIAITEAIQANIEL 55 (356)
T ss_dssp TEEEETTTEEEEECTTTCC--EEEEES--CHHHHHHHHHHHHHHH
T ss_pred cceecCCCeEEEEeecCCe--EEECCC--CHHHHHHHHHHHHHHH
Confidence 5777778999988776666 788896 8888877665544443
No 7
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=54.81 E-value=10 Score=24.56 Aligned_cols=32 Identities=13% Similarity=0.153 Sum_probs=22.7
Q ss_pred EEEecCCCCceeeeecCCcHHHHHHHHHHHHH
Q 045327 40 SEIRVPGSQERLWLGSYATPEAAAMAHDVAFY 71 (162)
Q Consensus 40 AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~ 71 (162)
+.|...+..-|+++|.|.+.++|..+-+....
T Consensus 37 ~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~ 68 (79)
T 1x60_A 37 SIVLLKDGLYKVQIGAFSSKDNADTLAARAKN 68 (79)
T ss_dssp EEEEEETTEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred eEEecCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 34433334459999999999999888766443
No 8
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=52.71 E-value=15 Score=24.11 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=23.9
Q ss_pred EEEEecCCCCceeeeecCCcHHHHHHHHHHHHH
Q 045327 39 VSEIRVPGSQERLWLGSYATPEAAAMAHDVAFY 71 (162)
Q Consensus 39 ~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~ 71 (162)
.+.|...+...||.+|-|.+.++|..+-+....
T Consensus 36 ~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~ 68 (81)
T 1uta_A 36 DSKITTNNGWNRVVIGPVKGKENADSTLNRLKM 68 (81)
T ss_dssp CEEEEECSSSEEEEESSCBTTTHHHHHHHHHHH
T ss_pred CeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHH
Confidence 344554444569999999999999888766544
No 9
>3lwd_A 6-phosphogluconolactonase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; 1.75A {Chromohalobacter salexigens}
Probab=46.75 E-value=20 Score=28.45 Aligned_cols=35 Identities=20% Similarity=0.109 Sum_probs=28.1
Q ss_pred ecCCcHHHHHHHHHHHHHHhc----------CCCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCLR----------RPRSLDGLNFPSML 88 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~~----------G~~a~~~lNFp~~~ 88 (162)
|.-.++|++++.|+.....+. |+++++.+|||...
T Consensus 103 ~~~~~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGH~as~fPg~~ 147 (226)
T 3lwd_A 103 TDDDTPEAGVETVAERLESLPWPASAVILGMGGDGHTASLFPDSE 147 (226)
T ss_dssp CSSSSHHHHHHHHHHHHHTSCSSBSEEEECCCTTSCBTTBCTTCT
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCCCEEEECcCCCCCeeecCCCCh
Confidence 555789999999999876642 67888899999863
No 10
>3hn6_A Glucosamine-6-phosphate deaminase; niaid, ssgcid, decode, UW, SBRI, infectious disease, LYME DI non-hodgkin lymphomas, neuroborreliosis; 2.20A {Borrelia burgdorferi}
Probab=39.43 E-value=30 Score=28.52 Aligned_cols=34 Identities=12% Similarity=0.123 Sum_probs=27.3
Q ss_pred ecCCcHHHHHHHHHHHHHHhc---------CCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCLR---------RPRSLDGLNFPSM 87 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~~---------G~~a~~~lNFp~~ 87 (162)
|.-+++|+++..|+.....+. |+++.+.+|||..
T Consensus 130 ~~~~d~~~~a~~Ye~~i~~~~~~Dl~lLGmG~DGH~asnfPg~ 172 (289)
T 3hn6_A 130 GNASNLKKECEEYEKKIKSFGGIMLFVGGIGPDGHIAFNEPGS 172 (289)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCSEEEEECCTTSCBTTBCTTC
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCEEEEccCCCCceeecCCCC
Confidence 334678999999999877653 7788889999986
No 11
>3tx2_A Probable 6-phosphogluconolactonase; ssgcid, hydrolase; 1.50A {Mycobacterium abscessus}
Probab=38.82 E-value=30 Score=27.71 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHHH-------h---------cCCCCCCCCCCCCC
Q 045327 57 ATPEAAAMAHDVAFYC-------L---------RRPRSLDGLNFPSM 87 (162)
Q Consensus 57 ~T~EeAA~AYD~aa~~-------~---------~G~~a~~~lNFp~~ 87 (162)
.++++++..|+..... + -|++.++.+|||..
T Consensus 119 ~~~~~~a~~Ye~~i~~~~~~~~~~~~~Dl~lLG~G~DGH~as~fPg~ 165 (251)
T 3tx2_A 119 TDLDAAALAYEQLLAANAEPGQDCPAFDVHLLGMGGEGHINSLFPHT 165 (251)
T ss_dssp TCHHHHHHHHHHHHHHTSCTTCSSCCCSEEEECCCTTCCBTTBCTTC
T ss_pred CCHHHHHHHHHHHHHhhhccccCCCCCCEEEECCCCCCceEEcCCcC
Confidence 5899999999998776 2 26777889999985
No 12
>3ico_A 6PGL, 6-phosphogluconolactonase; ssgcid, infectious disease, niaid, hydrolase, structural genomics; 2.15A {Mycobacterium tuberculosis}
Probab=38.81 E-value=30 Score=28.13 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=25.4
Q ss_pred CcHHHHHHHHHHHHHHh----------------cCCCCCCCCCCCCC
Q 045327 57 ATPEAAAMAHDVAFYCL----------------RRPRSLDGLNFPSM 87 (162)
Q Consensus 57 ~T~EeAA~AYD~aa~~~----------------~G~~a~~~lNFp~~ 87 (162)
+++|+++..|+.....+ -|+++.+.+|||..
T Consensus 135 ~~~~~~a~~Ye~~i~~~~~~~~~~p~~Dl~lLGmG~DGH~as~fPg~ 181 (268)
T 3ico_A 135 GDLDAAALAYEQVLAASAAPGDPAPNFDVHLLGMGPEGHINSLFPHS 181 (268)
T ss_dssp TCHHHHHHHHHHHHHHHSSTTCSSCCCSEEEECCCTTCCBTTBCTTC
T ss_pred cchhHHHHHHHHHHhhccCCCCCCCCcceEEeccCCcccccccCCCC
Confidence 68999999999987765 15677789999985
No 13
>3nwp_A 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, hydrolase; HET: MSE P6G PG4; 1.40A {Shewanella baltica}
Probab=38.75 E-value=21 Score=28.40 Aligned_cols=34 Identities=18% Similarity=0.118 Sum_probs=27.3
Q ss_pred ecCCcHHHHHHHHHHHHHHh----------cCCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCL----------RRPRSLDGLNFPSM 87 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~----------~G~~a~~~lNFp~~ 87 (162)
|.-.+++++++.|+.....+ -|+++++.+|||..
T Consensus 107 ~~~~~~~~~~~~ye~~i~~~~~~~Dl~lLG~G~dGHias~fPg~ 150 (233)
T 3nwp_A 107 NMFSTAEAGADMAAESLSNFPRPFDVVVLGMGNDGHTCSWFPCS 150 (233)
T ss_dssp CSSSSHHHHHHHHHHHTTTSCSSBSEEEECCCTTSCBTTBCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCCEEEEccCCCCCeeecCCCC
Confidence 55678999999999876554 26788889999986
No 14
>3oc6_A 6-phosphogluconolactonase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, carboxylic ester hydrolase; 2.10A {Mycobacterium smegmatis}
Probab=37.27 E-value=33 Score=27.42 Aligned_cols=31 Identities=19% Similarity=0.074 Sum_probs=25.3
Q ss_pred CcHHHHHHHHHHHHHH-----h---------cCCCCCCCCCCCCC
Q 045327 57 ATPEAAAMAHDVAFYC-----L---------RRPRSLDGLNFPSM 87 (162)
Q Consensus 57 ~T~EeAA~AYD~aa~~-----~---------~G~~a~~~lNFp~~ 87 (162)
.++|+++..|+..... + -|++.++.+|||..
T Consensus 119 ~~~~~~a~~Ye~~i~~~~~~~~~~~Dl~lLG~G~dGH~aslfPg~ 163 (248)
T 3oc6_A 119 DDLEAAAAGYAQLLSANFDSSVPGFDVHLLGMGGEGHVNSLFPDT 163 (248)
T ss_dssp TCHHHHHHHHHHHHHHHHTSSSCSEEEEEECCCTTCCBTTBCTTC
T ss_pred CCHHHHHHHHHHHHHHhcccCCCCCCEEEECCCCCCCEEEcCCCC
Confidence 5899999999987765 2 26788889999985
No 15
>1b69_A Protein (integrase); integrase, DNA binding, transposition, complex, beta-sheet recognition; HET: DNA; NMR {Enterococcus faecalis} SCOP: d.10.1.1 PDB: 1tn9_A* 1bb8_A 2bb8_A
Probab=34.49 E-value=46 Score=22.32 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=22.6
Q ss_pred CCCceeEEEECCCCcEEEEEecC-CCCceee
Q 045327 23 HQRKYKGIRRRKWGKWVSEIRVP-GSQERLW 52 (162)
Q Consensus 23 ~~S~yrGVr~r~~GkW~AeIr~~-~k~~ri~ 52 (162)
+.--+.|+++|+.|+|+.++.+. |+...||
T Consensus 8 gr~L~~GesqR~dG~Y~yry~d~~Gkr~~vY 38 (69)
T 1b69_A 8 GRILKTGESQRKDGRYLYKYIDSFGEPQFVY 38 (69)
T ss_dssp SSCCCTTEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCccCCCeEEccCCcEEEEEEcCCCCEEEEE
Confidence 34557789999999999999987 4444444
No 16
>3lhi_A Putative 6-phosphogluconolactonase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.33A {Neisseria gonorrhoeae}
Probab=32.47 E-value=32 Score=27.13 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=26.4
Q ss_pred cCCcHH--HHHHHHHHHHHHh---------cCCCCCCCCCCCCC
Q 045327 55 SYATPE--AAAMAHDVAFYCL---------RRPRSLDGLNFPSM 87 (162)
Q Consensus 55 tf~T~E--eAA~AYD~aa~~~---------~G~~a~~~lNFp~~ 87 (162)
.-.+++ +++..|+.....+ -|+++++.+|||..
T Consensus 105 ~~~~~~~~~~~~~ye~~i~~~~~~Dl~lLG~G~dGH~as~fPg~ 148 (232)
T 3lhi_A 105 DGKTETELHPDAVVDYALKHYKQPDVLILGMGNDGHTASIFPKA 148 (232)
T ss_dssp TTCCGGGCCHHHHHHHHHHHCCCCSEEEECCCTTSCBTTBCTTC
T ss_pred CCCChhhHHHHHHHHHHHhhCCCCCEEEEccCCCCCeeecCCCC
Confidence 346788 9999999987665 27788889999985
No 17
>1kcq_A Gelsolin, brevin, ADF, AGEL; alpha-beta structure, actin-binding protein, familial amyloi finnish type, cadmium binding, metal binding; 1.65A {Homo sapiens} SCOP: d.109.1.1
Probab=31.37 E-value=56 Score=22.39 Aligned_cols=37 Identities=19% Similarity=0.053 Sum_probs=30.6
Q ss_pred CcEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHH
Q 045327 36 GKWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYC 72 (162)
Q Consensus 36 GkW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~ 72 (162)
..--+.|-+.+....+|.|...+..|-..|-+.|...
T Consensus 27 ns~d~FILd~g~~iyvW~G~~s~~~Ek~~A~~~a~~i 63 (104)
T 1kcq_A 27 NNGDCFILDLGNNIHQWCGSNSNRYERLKATQVSKGI 63 (104)
T ss_dssp CTTSEEEEECSSEEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred CCCCeEEEeCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4445788888888899999999999999998887544
No 18
>1svq_A Severin; actin-binding; NMR {Dictyostelium discoideum} SCOP: d.109.1.1 PDB: 1svr_A 1svy_A
Probab=28.00 E-value=50 Score=23.19 Aligned_cols=34 Identities=21% Similarity=0.104 Sum_probs=28.3
Q ss_pred EEEEecCCCCceeeeecCCcHHHHHHHHHHHHHH
Q 045327 39 VSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYC 72 (162)
Q Consensus 39 ~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~ 72 (162)
-+.|-+.+....+|.|...+..|-+.|-+.|...
T Consensus 40 D~FILd~g~~iyvW~G~~ss~~Ek~~A~~~a~~i 73 (114)
T 1svq_A 40 DCFLLDAGLTIYQFNGSKSSPQEKNKAAEVARAI 73 (114)
T ss_dssp SEEEEEETTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred CeEEEecCCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 4677777777899999999999999998887653
No 19
>1ne7_A Glucosamine-6-phosphate isomerase; V-type like allosteric enzyme, conformational disorder, conformational differences, hydrolase; HET: GLC 16G AGP; 1.75A {Homo sapiens} SCOP: c.124.1.1
Probab=27.60 E-value=72 Score=25.75 Aligned_cols=34 Identities=18% Similarity=0.145 Sum_probs=27.2
Q ss_pred ecCCcHHHHHHHHHHHHHHhc---------CCCCCCCCCCCCC
Q 045327 54 GSYATPEAAAMAHDVAFYCLR---------RPRSLDGLNFPSM 87 (162)
Q Consensus 54 Gtf~T~EeAA~AYD~aa~~~~---------G~~a~~~lNFp~~ 87 (162)
|..+++|+++..|+.....+. |+++.+.+|||..
T Consensus 109 ~~~~~~e~~~~~ye~~i~~~~~~Dl~lLGiG~dGH~aslfPg~ 151 (289)
T 1ne7_A 109 GNAVDLQAECDAFEEKIKAAGGIELFVGGIGPDGHIAFNEPGS 151 (289)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCSEEEECCCTTCCSTTCCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCEEEEccCCCCcceecCCCC
Confidence 456799999999999777652 6777778999986
No 20
>3eb9_A 6-phosphogluconolactonase; catalytic mechanism, pentose phosphate pathway, hydrolase, zinc binding site; HET: FLC; 2.00A {Trypanosoma brucei} PDB: 2j0e_A* 3e7f_A*
Probab=25.12 E-value=69 Score=25.76 Aligned_cols=29 Identities=17% Similarity=0.039 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHh----------------------cCCCCCCCCCCCCCC
Q 045327 60 EAAAMAHDVAFYCL----------------------RRPRSLDGLNFPSML 88 (162)
Q Consensus 60 EeAA~AYD~aa~~~----------------------~G~~a~~~lNFp~~~ 88 (162)
++++..|+.....+ -|+++++.+|||...
T Consensus 124 ~~~a~~Ye~~i~~~~~~~~~~g~~~~~p~~Dl~lLGmG~DGH~as~fPg~~ 174 (266)
T 3eb9_A 124 MRVAEAYGKQLASLLPLKSVGEAGPKVPVFDVVLLGLGSDGHTASIFPGSQ 174 (266)
T ss_dssp HHHHHHHHHHHHHHSCEEETTTTSCEEECCSEEEECCCTTSCBTTBCTTCS
T ss_pred HHHHHHHHHHHHHhccccccccccccCCCCCEEEEccCCCCCeeecCCCCc
Confidence 99999999977654 166778899999853
No 21
>2ftc_I Mitochondrial ribosomal protein L16, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_I
Probab=23.70 E-value=1e+02 Score=22.23 Aligned_cols=37 Identities=14% Similarity=0.021 Sum_probs=27.0
Q ss_pred cEEEEEecCCCCceeeeecCCcHHHHHHHHHHHHHHhcC
Q 045327 37 KWVSEIRVPGSQERLWLGSYATPEAAAMAHDVAFYCLRR 75 (162)
Q Consensus 37 kW~AeIr~~~k~~ri~LGtf~T~EeAA~AYD~aa~~~~G 75 (162)
-|+|.|....- =+-++...+.+.|-.|...|+.+|-+
T Consensus 79 ~wva~Vk~G~i--lfEi~g~~~~~~a~eAlr~a~~KlP~ 115 (118)
T 2ftc_I 79 HYVTPVKAGRL--VVEMGGRCEFEEVQGFLDQVAHKLPF 115 (118)
T ss_pred EEEEEECCCCE--EEEEeccCCHHHHHHHHHHHHhhCCC
Confidence 49999985333 33455558899999999999988743
Done!