BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045328
(501 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 72/358 (20%), Positives = 135/358 (37%), Gaps = 20/358 (5%)
Query: 76 GLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDI 135
GL M + P+ Q G+ + + + +++ L+ S+PI + F+ + ++ + +
Sbjct: 66 GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 136 ARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLS 195
A Y I + A LR + T P M I + + PL ++ Y
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLN-WIFVYGK 184
Query: 196 LGVP-----GIAISNFITNFNSLFFLLCYMFVTRASDEXXXXXXXXXXXXXXXXXXXXXX 250
G P G ++ I + L LL Y+ ++
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQP---------- 234
Query: 251 XGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLP 310
E L RL P A+ E + + +L L + +A + + +SL++ P
Sbjct: 235 --KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFP 290
Query: 311 MALSSSVSTRVGNELGAGRPVKARLATVVAIXXXXXXXXXXXXXXXXXREAWGRVFTNDV 370
M++ ++VS RVG++LG A +A V + RE ++T +
Sbjct: 291 MSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQ 350
Query: 371 QVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVL 428
V+ L +L + + + Q + G LRG F S++++G P +L
Sbjct: 351 VVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYIL 408
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 73/172 (42%)
Query: 293 LATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIXXXXXXXXXXX 352
+A + I + ++Y +P ++ S+ + R+G LG +AR + V++
Sbjct: 276 VAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYISGVSLVSGWVLAVITV 335
Query: 353 XXXXXXREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATI 412
R ++ +D VL + TVL GL + A+ Q + LRG + I
Sbjct: 336 LSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFI 395
Query: 413 NFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWE 464
+ +F+ G +LA+ + +G G L+ + V+++ + K E
Sbjct: 396 HAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAVALVWCLEKYSME 447
>pdb|1U7O|A Chain A, Magnesium Dependent Phosphatase 1 (Mdp-1)
pdb|1U7P|A Chain A, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|B Chain B, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|C Chain C, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
pdb|1U7P|D Chain D, X-Ray Crystal Structure Of The Hypothetical
Phosphotyrosine Phosphatase Mdp-1 Of The Haloacid
Dehalogenase Superfamily
Length = 164
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 5 QNSQKYPTMPEVLDELKRMTDIGFPIAAMS 34
QN Q YP +PEVL R+ +G P+AA S
Sbjct: 43 QNIQLYPEVPEVLG---RLQSLGVPVAAAS 69
>pdb|1NOZ|A Chain A, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
pdb|1NOZ|B Chain B, T4 Dna Polymerase Fragment (Residues 1-388) At 110k
pdb|1NOY|A Chain A, Dna Polymerase (e.c.2.7.7.7)/dna Complex
pdb|1NOY|B Chain B, Dna Polymerase (e.c.2.7.7.7)/dna Complex
Length = 388
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 8 QKYPTMPEVLDELKRMTDIGFPIAAMS 34
QK+P+M + D +KRM DIG M+
Sbjct: 58 QKFPSMKDARDWMKRMEDIGLEALGMN 84
>pdb|1K9E|A Chain A, Crystal Structure Of A Mutated Family-67
Alpha-D-Glucuronidase (E285n) From Bacillus
Stearothermophilus T-6, Complexed With 4-O-Methyl-
Glucuronic Acid
pdb|1K9F|A Chain A, Crystal Structure Of A Mutated Family-67
Alpha-D-Glucuronidase (E285n) From Bacillus
Stearothermophilus T-6, Complexed With Aldotetraouronic
Acid
Length = 679
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 121 KLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRI 161
K E +++ H PD+A VA ++ Y I ++ ++ P+ I
Sbjct: 204 KTETKLITDHFLPDVAEVADIFRTYGIKTFLSINYASPIEI 244
>pdb|1K9D|A Chain A, The 1.7 A Crystal Structure Of Alpha-D-Glucuronidase, A
Family-67 Glycoside Hydrolase From Bacillus
Stearothermophilus T-1
pdb|1L8N|A Chain A, The 1.5a Crystal Structure Of Alpha-d-glucuronidase From
Bacillus Stearothermophilus T-1, Complexed With
4-o-methyl-glucuronic Acid And Xylotriose
pdb|1MQQ|A Chain A, The Crystal Structure Of Alpha-D-Glucuronidase From
Bacillus Stearothermophilus T-1 Complexed With
Glucuronic Acid
Length = 679
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 121 KLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRI 161
K E +++ H PD+A VA ++ Y I ++ ++ P+ I
Sbjct: 204 KTETKLITDHFLPDVAEVADIFRTYGIKTFLSINYASPIEI 244
>pdb|1MQP|A Chain A, The Crystal Structure Of Alpha-D-Glucuronidase From
Bacillus Stearothermophilus T-6
Length = 679
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 121 KLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRI 161
K E +++ H PD+A VA ++ Y I ++ ++ P+ I
Sbjct: 204 KTETKLITDHFLPDVAEVADIFRTYGIKTFLSINYASPIEI 244
>pdb|1MQR|A Chain A, The Crystal Structure Of Alpha-D-Glucuronidase (E386q)
From Bacillus Stearothermophilus T-6
Length = 679
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 121 KLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRI 161
K E +++ H PD+A VA ++ Y I ++ ++ P+ I
Sbjct: 204 KTETKLITDHFLPDVAEVADIFRTYGIKTFLSINYASPIEI 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.432
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,680,434
Number of Sequences: 62578
Number of extensions: 388197
Number of successful extensions: 784
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 772
Number of HSP's gapped (non-prelim): 11
length of query: 501
length of database: 14,973,337
effective HSP length: 103
effective length of query: 398
effective length of database: 8,527,803
effective search space: 3394065594
effective search space used: 3394065594
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)