Query 045328
Match_columns 501
No_of_seqs 264 out of 1943
Neff 10.2
Searched_HMMs 46136
Date Fri Mar 29 12:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045328.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045328hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 5.1E-56 1.1E-60 444.3 54.4 435 16-470 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 1.3E-51 2.9E-56 416.4 56.2 434 18-465 26-466 (478)
3 PRK00187 multidrug efflux prot 100.0 6.5E-51 1.4E-55 411.4 55.1 428 16-460 5-443 (464)
4 PRK01766 multidrug efflux prot 100.0 9.5E-49 2.1E-53 397.1 55.8 438 12-465 3-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 9.3E-49 2E-53 395.2 51.9 424 17-460 8-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 2E-48 4.3E-53 389.7 52.2 423 17-465 5-434 (441)
7 TIGR01695 mviN integral membra 100.0 5.2E-36 1.1E-40 308.5 51.9 412 23-461 2-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 9.5E-36 2.1E-40 305.5 47.0 416 24-461 2-434 (488)
9 TIGR00797 matE putative efflux 100.0 1E-35 2.2E-40 291.0 43.8 337 29-383 1-341 (342)
10 KOG1347 Uncharacterized membra 100.0 3.9E-37 8.4E-42 305.3 32.9 446 16-478 23-469 (473)
11 PRK15099 O-antigen translocase 100.0 5.5E-34 1.2E-38 285.6 45.1 405 23-460 3-411 (416)
12 PF03023 MVIN: MviN-like prote 100.0 5.6E-29 1.2E-33 249.6 49.2 386 51-461 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 8E-28 1.7E-32 236.8 50.1 421 20-462 6-438 (518)
14 PRK10459 colanic acid exporter 100.0 6E-28 1.3E-32 247.6 45.7 398 20-460 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 4.1E-25 8.9E-30 226.1 40.8 403 18-458 3-408 (480)
16 COG0534 NorM Na+-driven multid 99.9 2E-20 4.3E-25 187.8 27.4 209 252-463 13-223 (455)
17 PRK10367 DNA-damage-inducible 99.9 1.7E-20 3.8E-25 188.2 26.4 208 251-460 4-211 (441)
18 PRK00187 multidrug efflux prot 99.9 4.4E-20 9.6E-25 186.9 26.7 208 15-223 230-444 (464)
19 PRK10189 MATE family multidrug 99.9 3.9E-20 8.4E-25 187.4 24.7 207 251-460 24-236 (478)
20 PRK09575 vmrA multidrug efflux 99.9 5.2E-20 1.1E-24 186.1 25.2 209 251-461 7-215 (453)
21 PRK01766 multidrug efflux prot 99.9 3.2E-19 6.9E-24 181.2 27.4 208 251-461 7-218 (456)
22 TIGR01695 mviN integral membra 99.8 1.4E-17 3.1E-22 171.6 31.2 207 15-223 217-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 1.3E-16 2.8E-21 150.6 32.8 272 23-325 1-273 (273)
24 TIGR00797 matE putative efflux 99.8 3.2E-16 6.9E-21 153.3 25.3 194 264-460 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 2.9E-15 6.2E-20 150.7 32.1 211 13-225 190-405 (451)
26 COG0728 MviN Uncharacterized m 99.7 4E-14 8.8E-19 140.3 36.0 214 11-226 222-440 (518)
27 PF01554 MatE: MatE; InterPro 99.7 6.1E-18 1.3E-22 146.4 8.1 162 264-427 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 3.2E-15 6.9E-20 153.6 26.7 202 16-222 220-433 (488)
29 PF01554 MatE: MatE; InterPro 99.7 1.4E-17 3.1E-22 144.1 6.5 160 29-189 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 2.5E-13 5.3E-18 139.6 35.4 201 16-222 202-404 (492)
31 PRK15099 O-antigen translocase 99.6 4.9E-14 1.1E-18 141.4 25.3 200 15-221 209-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 1.4E-12 3E-17 121.6 31.6 248 39-324 2-251 (251)
33 COG2244 RfbX Membrane protein 99.6 1.4E-12 2.9E-17 133.8 27.4 187 16-208 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 1.6E-08 3.4E-13 102.8 33.7 428 24-460 4-469 (549)
35 KOG1347 Uncharacterized membra 99.2 1.1E-09 2.4E-14 109.6 18.9 206 252-461 24-230 (473)
36 KOG2864 Nuclear division RFT1 99.1 7.1E-07 1.5E-11 85.0 33.7 426 20-461 7-449 (530)
37 PF07260 ANKH: Progressive ank 98.9 6.2E-06 1.3E-10 75.4 29.9 314 18-356 8-343 (345)
38 PF14667 Polysacc_synt_C: Poly 98.5 1.4E-05 3.1E-10 67.3 18.1 82 143-226 2-83 (146)
39 PF04506 Rft-1: Rft protein; 98.4 7.9E-05 1.7E-09 76.2 21.7 203 20-223 252-470 (549)
40 PF01943 Polysacc_synt: Polysa 98.2 0.00027 5.9E-09 66.2 19.5 187 260-460 3-190 (273)
41 KOG2864 Nuclear division RFT1 97.9 0.0057 1.2E-07 59.1 22.7 201 20-222 238-448 (530)
42 PF13440 Polysacc_synt_3: Poly 97.9 0.0029 6.3E-08 58.5 20.1 165 278-459 6-171 (251)
43 PF14667 Polysacc_synt_C: Poly 97.8 0.00011 2.4E-09 61.9 9.1 79 380-461 2-80 (146)
44 PF07260 ANKH: Progressive ank 97.8 0.015 3.2E-07 53.9 21.8 156 251-416 6-168 (345)
45 COG4267 Predicted membrane pro 97.7 0.048 1E-06 51.6 35.1 320 69-429 72-413 (467)
46 PF00558 Vpu: Vpu protein; In 83.9 1.4 2.9E-05 32.1 3.1 38 452-489 24-63 (81)
47 COG4267 Predicted membrane pro 80.3 60 0.0013 31.6 18.4 134 310-460 77-210 (467)
48 PF05684 DUF819: Protein of un 78.6 56 0.0012 32.2 13.3 23 437-459 144-166 (378)
49 COG2211 MelB Na+/melibiose sym 75.3 99 0.0021 31.4 31.1 50 20-69 11-63 (467)
50 PF03547 Mem_trans: Membrane t 75.0 16 0.00035 36.1 8.8 15 341-355 34-48 (385)
51 PF04505 Dispanin: Interferon- 65.4 39 0.00084 24.9 6.8 40 312-351 35-74 (82)
52 PF10160 Tmemb_40: Predicted m 58.4 1.4E+02 0.0031 27.3 10.3 86 328-416 109-194 (261)
53 TIGR00822 EII-Sor PTS system, 57.7 1.6E+02 0.0035 27.3 17.5 33 306-338 109-141 (265)
54 PRK09757 PTS system N-acetylga 52.5 2E+02 0.0043 26.8 15.9 34 306-339 110-143 (267)
55 PF01102 Glycophorin_A: Glycop 49.6 16 0.00034 29.3 2.5 9 438-446 68-76 (122)
56 PF06963 FPN1: Ferroportin1 (F 46.4 3.3E+02 0.0071 27.5 16.4 57 290-356 37-93 (432)
57 COG3715 ManY Phosphotransferas 43.5 2.7E+02 0.0059 25.8 12.6 56 311-366 114-170 (265)
58 PF08229 SHR3_chaperone: ER me 38.4 1.9E+02 0.0042 25.4 7.7 32 349-380 18-51 (196)
59 TIGR00881 2A0104 phosphoglycer 38.1 2.9E+02 0.0063 26.4 10.3 11 317-327 49-59 (379)
60 PF07074 TRAP-gamma: Transloco 36.9 2.3E+02 0.005 24.2 7.5 39 421-459 29-67 (170)
61 PRK01637 hypothetical protein; 36.6 3.7E+02 0.0079 25.3 16.8 15 315-329 110-124 (286)
62 PRK13852 type IV secretion sys 36.1 3.1E+02 0.0068 25.9 9.2 54 300-354 29-82 (295)
63 KOG2533 Permease of the major 35.9 5.1E+02 0.011 26.7 29.5 68 153-220 153-224 (495)
64 PF04791 LMBR1: LMBR1-like mem 33.6 3E+02 0.0064 28.1 9.7 51 297-347 75-129 (471)
65 COG0798 ACR3 Arsenite efflux p 31.2 4.9E+02 0.011 25.1 15.2 193 27-230 143-336 (342)
66 PF06422 PDR_CDR: CDR ABC tran 29.4 21 0.00045 27.7 0.4 31 432-462 47-77 (103)
67 KOG4694 Predicted membrane pro 29.4 3E+02 0.0065 22.8 6.8 26 418-445 94-119 (174)
68 PF15176 LRR19-TM: Leucine-ric 28.1 1.2E+02 0.0025 23.3 4.0 14 456-469 36-49 (102)
69 PF11446 DUF2897: Protein of u 26.9 50 0.0011 22.2 1.8 16 443-458 11-26 (55)
70 PF03904 DUF334: Domain of unk 25.5 5E+02 0.011 23.4 8.3 38 93-130 142-179 (230)
71 PRK14472 F0F1 ATP synthase sub 25.2 35 0.00075 29.4 1.0 40 435-474 12-51 (175)
72 KOG3832 Predicted amino acid t 24.4 3.8E+02 0.0083 23.7 7.0 31 399-430 24-54 (319)
73 PRK08476 F0F1 ATP synthase sub 24.0 42 0.0009 27.8 1.2 35 441-475 7-41 (141)
74 PF02592 DUF165: Uncharacteriz 23.8 4.2E+02 0.0091 21.9 12.2 105 76-187 8-116 (145)
75 COG3462 Predicted membrane pro 23.8 86 0.0019 24.3 2.7 22 436-457 46-67 (117)
76 CHL00118 atpG ATP synthase CF0 23.1 71 0.0015 26.9 2.5 33 442-474 23-55 (156)
77 PRK03612 spermidine synthase; 22.7 8.8E+02 0.019 25.2 21.2 30 28-57 21-51 (521)
78 PF06946 Phage_holin_5: Phage 22.4 3.5E+02 0.0076 20.5 6.9 52 173-224 34-86 (93)
79 PRK08475 F0F1 ATP synthase sub 21.9 72 0.0016 27.3 2.3 33 442-474 23-55 (167)
80 KOG1607 Protein transporter of 21.5 7.2E+02 0.016 23.8 10.1 16 370-385 198-213 (318)
81 COG4736 CcoQ Cbb3-type cytochr 21.4 2.7E+02 0.0059 19.2 4.5 8 457-464 28-35 (60)
82 smart00786 SHR3_chaperone ER m 21.4 58 0.0012 28.4 1.6 36 348-383 17-54 (196)
83 PRK13453 F0F1 ATP synthase sub 21.0 48 0.001 28.5 1.1 34 441-474 18-51 (173)
84 PRK10263 DNA translocase FtsK; 20.4 1.3E+03 0.029 27.1 11.9 19 434-452 158-176 (1355)
85 COG0833 LysP Amino acid transp 20.1 7.9E+02 0.017 25.5 9.4 18 176-193 193-210 (541)
86 PRK14473 F0F1 ATP synthase sub 20.0 53 0.0011 27.9 1.1 35 441-475 8-42 (164)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=5.1e-56 Score=444.34 Aligned_cols=435 Identities=26% Similarity=0.356 Sum_probs=413.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS 95 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 95 (501)
.++..|+++++++|++++++.+.+++.+|++++||+|++++|+.+++.++..+. ..+..|++.|.++.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 667899999999999999999999999999999999999999999999999998 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Q 045328 96 LVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMW 174 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (501)
++++..++++.++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+...+.+.+|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999888876 88999999999998999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-hc-CCcchhHHHHHHHHHHHHHHHHHHHHhccCC--CCCCCCcccCCCCCCCCcCCCCCc
Q 045328 175 STLISIAFHFPLIIYLTFY-LS-LGVPGIAISNFITNFNSLFFLLCYMFVTRAS--DEPLSTPLKTSQTLPTSSLTNSSS 250 (501)
Q Consensus 175 ~~i~~~i~~i~l~~~li~~-~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 250 (501)
.+++++++|+++|++|+++ ++ +|+.|+++||++++.+.+++..++++++++. .+.. ..++
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~ 234 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKK----------------KLLK 234 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhh----------------hccC
Confidence 9999999999999999998 46 9999999999999999999999999877642 1111 2223
Q ss_pred -chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 045328 251 -LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGR 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~ 329 (501)
+++.+|++++.|.|..+++..+...+...+.++++++ ++++|+|+++.++.++.++++.|++++..|++++++|+||
T Consensus 235 ~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~ 312 (455)
T COG0534 235 PDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGN 312 (455)
T ss_pred CCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 8999999999999999999999999999999999997 9999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcch
Q 045328 330 PVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIG 409 (501)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~ 409 (501)
++++|+..+.+.++++.++...++.+++++++++++|++|+|+.+.+..++++.++.+++++++.+..+++||.||++.+
T Consensus 313 ~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~ 392 (455)
T COG0534 313 YKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIP 392 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Q 045328 410 ATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKA 470 (501)
Q Consensus 410 ~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~ 470 (501)
+..++.+.|.+.+|+.+++.... +|..|+|++...++.+..++..+++++.+|+++....
T Consensus 393 ~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 393 FIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 99999999999999999999876 8999999999999999999999999999998765443
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=1.3e-51 Score=416.43 Aligned_cols=434 Identities=15% Similarity=0.136 Sum_probs=398.9
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHH
Q 045328 18 DELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLV 97 (501)
Q Consensus 18 ~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~ 97 (501)
+..|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++.++.++|++|++|++++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~~~~~ 104 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRDRRRA 104 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 3489999999999999999999999999999999999999999999999887 889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Q 045328 98 SLTLQRTILMLLIASIPIALL-WFKLEPLMLSLH--QTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMW 174 (501)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (501)
++..+.++.++++++++.+++ +.+.+++..++. .|+|+.+.+.+|+++..++.++..+...+.+++|+.||++.++.
T Consensus 105 ~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 184 (478)
T PRK10189 105 RAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPLL 184 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhHH
Confidence 999999999999999988876 778899999984 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhh----cCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc
Q 045328 175 STLISIAFHFPLIIYLTFYL----SLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS 250 (501)
Q Consensus 175 ~~i~~~i~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (501)
.++++.++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++++...+.+. + .....+
T Consensus 185 i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~------~----~~~~~~- 253 (478)
T PRK10189 185 INGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISL------K----SYFKPL- 253 (478)
T ss_pred HHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeee------c----cccccC-
Confidence 99999999999999999864 78999999999999999988876666543221111110 0 000112
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
+++.+|++++.|+|..++.........+.+.++++++ ++++|+|+++.++.++.+++..|++++..|++++++|+||.
T Consensus 254 ~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~ 331 (478)
T PRK10189 254 NFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQI 331 (478)
T ss_pred CHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 6789999999999999999999988888888899986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchH
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGA 410 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (501)
+++|+..+.+.++++++++..+++++++++++..+|++|+|+.+.+..++++.++..++++.+.+..+.++|.||++.++
T Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~ 411 (478)
T PRK10189 332 AQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAM 411 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHH
Q 045328 411 TINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWER 465 (501)
Q Consensus 411 ~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~ 465 (501)
+.++.+.|++.+|+.+++....++|+.|+|++..+++.+.+++.++++++.+|++
T Consensus 412 ~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~ 466 (478)
T PRK10189 412 WVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW 466 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence 9999999999999999998877899999999999999999999999999999987
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=6.5e-51 Score=411.44 Aligned_cols=428 Identities=26% Similarity=0.319 Sum_probs=392.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS 95 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 95 (501)
.++..|++++.++|.+++++...+.+.+|+++++|+|++++++++++.++.++. ..+..|++++.++.++|++|++|++
T Consensus 5 ~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~~ 83 (464)
T PRK00187 5 PTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDIE 83 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChh
Confidence 456799999999999999999999999999999999999999999999999988 7889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 045328 96 LVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWS 175 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (501)
++++.++.++.+.++++++..++..+.+|++.+++.|+|+.+.+.+|+++..++.++..+...+++++|+.|+++.+++.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~ 163 (464)
T PRK00187 84 GATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVI 163 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999988776557799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhh----cCCcchhHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCcccCCCCCCCCcCCCCCc
Q 045328 176 TLISIAFHFPLIIYLTFYL----SLGVPGIAISNFITNFNSLFFLLCYMFVTRASD-EPLSTPLKTSQTLPTSSLTNSSS 250 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 250 (501)
++++.++|+++++++++++ ++|+.|+++|+.+++....+.+.++++++++.+ .+.+. ..++
T Consensus 164 ~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 229 (464)
T PRK00187 164 SLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK--------------GLSR 229 (464)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc--------------cccC
Confidence 9999999999999999864 489999999999999888877766665443221 11100 1122
Q ss_pred -chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 045328 251 -LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGR 329 (501)
Q Consensus 251 -~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~ 329 (501)
+++.+|++++.|+|.++.+..+.....+++.++++++ ++++++++++.++..+.+++..+++++..+.+++++|+||
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 7888999999999999999999999999999999986 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC--cH---HHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcC
Q 045328 330 PVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTN--DV---QVLELTKTVLPIIGLCELANCPQTTSCGILRGSA 404 (501)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 404 (501)
.+++++..+.++.++++++++.+++++++++++.++|++ |+ |+.+.+..++++.+++.++++++.+..+++++.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 999999999999999999999999999999999999974 44 6788899999999999999999999999999999
Q ss_pred CCcchHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 405 RPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 405 ~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
|++.+++.++++.|++++|+.+++.+.+++|+.|+|+++.+++++..++...+++.
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998888999999999999999998887776644
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=9.5e-49 Score=397.06 Aligned_cols=438 Identities=22% Similarity=0.327 Sum_probs=401.1
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCC
Q 045328 12 TMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGS 91 (501)
Q Consensus 12 ~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~ 91 (501)
++++.++..|+++++++|.+++++...+.+.+|..+++++|++++++++++.++..+. ..+..|++.+..+.+||++|+
T Consensus 3 ~~~~~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~ 81 (456)
T PRK01766 3 ETQKYKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGA 81 (456)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcC
Confidence 4556788899999999999999999999999999999999999999999999987776 788899999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCc
Q 045328 92 RNLSLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTW 170 (501)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~ 170 (501)
+|+++.++.++.++.++++++++++++ +.+.+++..+++.++|..+.+.+|+++.+++.++..+...+++++++.|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~ 161 (456)
T PRK01766 82 GRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTK 161 (456)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 999999999999999999999888876 6778899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh----hcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCcccCCCCCCCCcC
Q 045328 171 PLMWSTLISIAFHFPLIIYLTFY----LSLGVPGIAISNFITNFNSLFFLLCYMFVTRASD-EPLSTPLKTSQTLPTSSL 245 (501)
Q Consensus 171 ~~~~~~i~~~i~~i~l~~~li~~----~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 245 (501)
.+++.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.+++++.+ .+... .
T Consensus 162 ~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~------------~ 229 (456)
T PRK01766 162 PTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFK------------G 229 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhc------------c
Confidence 99999999999999999999864 2589999999999999999998887776543321 11100 0
Q ss_pred CCCCcchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 045328 246 TNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNEL 325 (501)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~ 325 (501)
.... +++.+|++++.++|..+++..+...+.++..++++++ ++++++++++.++.++..+++.+++.+..+.+++++
T Consensus 230 ~~~~-~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~ 306 (456)
T PRK01766 230 LYKP-DWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFEL 306 (456)
T ss_pred ccCC-CHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0112 7788999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCC
Q 045328 326 GAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSAR 405 (501)
Q Consensus 326 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~ 405 (501)
|+||++++|+..+.++++++.++++.+++++.+++++..+|++|+|+.+.+..++++..+..++.+++....+++++.||
T Consensus 307 Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~ 386 (456)
T PRK01766 307 GAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKD 386 (456)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHH
Q 045328 406 PGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWER 465 (501)
Q Consensus 406 ~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~ 465 (501)
++.+++.++.+.|++.+|..+++...+++|+.|+|+++.+++.+.+++.++++++.+|+.
T Consensus 387 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 387 TRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998899999999998888899999999999999999999998888776654
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=9.3e-49 Score=395.19 Aligned_cols=424 Identities=17% Similarity=0.147 Sum_probs=389.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328 17 LDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS 95 (501)
Q Consensus 17 ~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 95 (501)
++..|+++++++|.+++++...+++.+|+.++++ +|++++++++++.++..+. ..+..+++.+.++.++|++|++|+|
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4568999999999999999999999999999999 5999999999999999987 7888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Q 045328 96 LVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMW 174 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (501)
++++..+.++.++.+++++.+++ +.+.+|++.+++.+++..+.+.+|+++..++.++..+...+..++|+.|+++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999988876 77899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chh
Q 045328 175 STLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGH 253 (501)
Q Consensus 175 ~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 253 (501)
.++++.++|+++++++++.+++|+.|+++|+++++.+..++..+++++++.. .+++. +.++ +++
T Consensus 167 ~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~-~~~~~--------------~~~~~~~~ 231 (453)
T PRK09575 167 LMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRAN-IRLTL--------------KELRFNWS 231 (453)
T ss_pred HHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCce-eEEee--------------ccCCcCHH
Confidence 9999999999999999988889999999999999999999887776544332 22211 2233 788
Q ss_pred hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHH
Q 045328 254 EWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKA 333 (501)
Q Consensus 254 ~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~ 333 (501)
.+|++++.|.|..+++....+...+.+.++++++ +++++|+|+++.++..+..++..+++++..|.+|+++|+||+|++
T Consensus 232 ~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g-~~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~ 310 (453)
T PRK09575 232 LAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYG-SALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNI 310 (453)
T ss_pred HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHH
Confidence 8999999999999999999999999889999887 357899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC-cHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHH
Q 045328 334 RLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTN-DVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATI 412 (501)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 412 (501)
++..+.++++++..+++.+++++.+++++..+|++ |+|+.+.+.+++++.+++.+++++..+..+++++.||++.++..
T Consensus 311 ~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 390 (453)
T PRK09575 311 KKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFI 390 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999999999999999999999995 78899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 413 NFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 413 ~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
++.. +++.+|+.+++... +|+.|+|+++.+++.+..++...++++
T Consensus 391 ~~~~-~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 391 SIGN-MLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHh-HHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9886 67889999988654 699999999999999988888766654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=2e-48 Score=389.69 Aligned_cols=423 Identities=18% Similarity=0.137 Sum_probs=374.1
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328 17 LDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRL-GSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS 95 (501)
Q Consensus 17 ~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~l-g~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 95 (501)
.++.|+++++++|.++++++..+.+.+|+.+++++ |++++++++++.++..+. ..+..+++.+.++.+||++|+||+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45689999999999999999999999999999997 677999999999999988 8888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHH
Q 045328 96 LVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMW 174 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 174 (501)
++++..++++.+++++++++.++ ..+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+++|+.||++.+++
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999999988866 67888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-c-h
Q 045328 175 STLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-L-G 252 (501)
Q Consensus 175 ~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~ 252 (501)
.++++.++|+++++++++++++|+.|+++|+.+++.+..++..++++++++.+ +++. ..++ + +
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~-~~~~--------------~~~~~~~~ 228 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLR-GISL--------------EMLKTAWR 228 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccH--------------HHhhhhhH
Confidence 99999999999999999988999999999999999999888777776533211 1100 1122 3 3
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHH
Q 045328 253 HEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVK 332 (501)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~ 332 (501)
+.+|++++.|.|..+++..+...+.+.+.++++++ ++++|+|+++.++.++.+++..|++++..|.+++++|+||+++
T Consensus 229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~ 306 (441)
T PRK10367 229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQ 306 (441)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHH
Confidence 57899999999999999999999999999999986 8899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCC---Ccch
Q 045328 333 ARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSAR---PGIG 409 (501)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~ 409 (501)
+|+..+.+.++++.++.+.+++++++++++..+|++|+|+.+.+..++++.++..+......+...++++.+| ++.+
T Consensus 307 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~ 386 (441)
T PRK10367 307 LLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNS 386 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999988764433344444555666665 9999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHH
Q 045328 410 ATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWER 465 (501)
Q Consensus 410 ~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~ 465 (501)
+..++++.|+..++. +++|+.|+|++..+++.++.++..++++++ |++
T Consensus 387 ~~~~~~~~~~~~~~~-------~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 387 MAVAAAGFALTLLTL-------PWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHHHHHH-------HHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 999999866422222 236999999999999999999988877664 754
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=5.2e-36 Score=308.48 Aligned_cols=412 Identities=15% Similarity=0.137 Sum_probs=348.5
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHH-HHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhCCCChhHHHH
Q 045328 23 MTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLEL-AGGALAIGFTNITGYSVL-SGLAMGMEPLCGQGFGSRNLSLVSL 99 (501)
Q Consensus 23 i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~-~~~~~~~~l~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~ 99 (501)
+.|.+.-..++++++.+++++|.++++| +|++++ ++++++.++...+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 5788899999999999999999999999 999999 899999999877633333 468888777776654322 56777
Q ss_pred HHHHHHHHHHHHHH-HHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 045328 100 TLQRTILMLLIASI-PIALL-WFKLEPLMLSL--HQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWS 175 (501)
Q Consensus 100 ~~~~~~~~~~~~~~-~~~il-~~~~~~i~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (501)
.+..+.....+.+. +.+++ +.+.+++..++ +.+++..+.+.+|++++.++.++..+....++++|+.+|++.++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 77766665554444 34444 67778888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhH--HHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-ch
Q 045328 176 TLISIAFHFPLIIYLTFYLSLGVPGIA--ISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LG 252 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~~~~~g~~g~a--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 252 (501)
+++.++++++..+++. .++|..|++ ++++++..+..++..++.++++.. ++ ++++ ++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~---~~---------------~~~~~~~ 219 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFL---LK---------------PRFNFRD 219 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc---cc---------------CcCCCCC
Confidence 9999887776543333 378999988 999999999988877766544311 11 2222 67
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCChH
Q 045328 253 HEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYT-LPMALSSSVSTRVGNELGAGRPV 331 (501)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~p~~s~~~g~~~~~ 331 (501)
+.+|++++++.|..+++...++...+|+.+.+.++ ++++++|+.+.++.++... +..+++++..|.+++++|+||.+
T Consensus 220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 88999999999999999999999999998866654 8899999999999998765 56899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCc
Q 045328 332 KARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTN----DVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPG 407 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 407 (501)
++++..+++.++...++.+.++++.++++++..+|.+ |+|..+.+..++++++++.++.+++.+..+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 9999999999999999999999999999999999976 567788899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 408 IGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 408 ~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
.+++.++.+ .++++++.+++... +|..|+|+++.+++.+..++..++++|+
T Consensus 378 ~~~~~~~~~-~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVIS-VVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHH-HHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999997 67888888887654 7999999999999999999888777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=9.5e-36 Score=305.51 Aligned_cols=416 Identities=12% Similarity=0.130 Sum_probs=348.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHH
Q 045328 24 TDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQ 102 (501)
Q Consensus 24 ~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~ 102 (501)
.|.+.|.+++++...+.+++|..+++| +|++++|+++.+.++..++......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 467899999999999999999999999 8999999999999998887444557999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 045328 103 RTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIA 181 (501)
Q Consensus 103 ~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i 181 (501)
.++.+..+.+++.+++ +.+.+++...+..+++. ..++++..+..++..+.....+++|+.+|++..+..++++.+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999999988876 66777777766655543 246788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhh-----cCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chhhH
Q 045328 182 FHFPLIIYLTFYL-----SLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGHEW 255 (501)
Q Consensus 182 ~~i~l~~~li~~~-----~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 255 (501)
+++.+...++..+ +.|+.|+++++.++..+..++..++.+++++.+.+.+. . ...+ +++.+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-----------~--~~~~~~~~~~ 224 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPF-----------F--DYKSEGKALL 224 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc-----------c--ccCcchHHHH
Confidence 9887766655422 45678888999999999988876665544332111100 0 1111 67789
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC--h---h---hHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHhhc
Q 045328 256 GILIRLAIPSCMAVCLEWWWYEFMTILAGYLRN--P---Q---AALATS-ALVIQTTSLMYTLPMALSSSVSTRVGNELG 326 (501)
Q Consensus 256 ~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~--g---~---~~~a~~-~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g 326 (501)
|+++++|+|.+++++...+...+|++++++... | . +.++.| +++.++..+...+..+++++..|.+++++|
T Consensus 225 k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~ 304 (488)
T TIGR02900 225 FDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMA 304 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998876420 0 1 233444 466778888888889999999999999999
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCC
Q 045328 327 AGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARP 406 (501)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 406 (501)
++|.++.++..+++.++...++.|.++++.++++++..++.++++ +..+++++++..++.+++.+..+++++.||+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 380 (488)
T TIGR02900 305 KKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQ 380 (488)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999999986543 5778999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 407 GIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 407 ~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
|..++.++.+ .++++++.+.+...+.+|..|+|+++.+++.+..++..++.+|.
T Consensus 381 ~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 381 KVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred hHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 67888888877644568999999999999999999988887653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=1e-35 Score=291.05 Aligned_cols=337 Identities=28% Similarity=0.410 Sum_probs=308.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 045328 29 PIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILML 108 (501)
Q Consensus 29 p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 108 (501)
|.+++++...+.+.+|+.+++++|++++|+++++.++..+. ..+..|++++..+.++++.|++|+|+.++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999988877 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Q 045328 109 LIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLI 187 (501)
Q Consensus 109 ~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~ 187 (501)
.+.+++.+++ +.+.+++..+++.+++..+.+..++++++++.++.++..+..+++++.||++.....++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999998876 788999999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hhc-CCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chhhHHHHHHHHhh
Q 045328 188 IYLTF-YLS-LGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGHEWGILIRLAIP 264 (501)
Q Consensus 188 ~~li~-~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p 264 (501)
+++++ .++ +|+.|+++++.+++++..++..++.+++++.+.+++ +.++ +++.+|+++++|.|
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~k~~~~~~~P 224 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWE---------------GLLKPDWEVLKRLLKLGLP 224 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccc---------------cccCCCHHHHHHHHHhCch
Confidence 98887 567 889999999999999999988777765333322211 1222 78899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 045328 265 SCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLA 344 (501)
Q Consensus 265 ~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~ 344 (501)
.+++++..++...+++.+++.++ ++++++|+++.++.++...++.+++++..|.++++++++|.++.++..+++.++.
T Consensus 225 ~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (342)
T TIGR00797 225 IAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLS 302 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999998875 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHH
Q 045328 345 LLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPII 383 (501)
Q Consensus 345 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~ 383 (501)
+.++++.++++.++++++.++|++|+|+.+.+..++++.
T Consensus 303 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 303 LLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888888764
No 10
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=3.9e-37 Score=305.30 Aligned_cols=446 Identities=35% Similarity=0.581 Sum_probs=421.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChh
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLS 95 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~ 95 (501)
...+.|++++++.|.++..+.+...+.++..++||+|+.++++.+++.+..+..+..+..|+..+..+.++|++|+++++
T Consensus 23 ~~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~ 102 (473)
T KOG1347|consen 23 LVTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFT 102 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccc
Confidence 36789999999999999999999999999999999999999999999999999888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 045328 96 LVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWS 175 (501)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (501)
....+.+++..+....+++..+++.+.+|+...+++++++...+..|.++..+..+.+.....+..+++++++.....+.
T Consensus 103 ~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~ 182 (473)
T KOG1347|consen 103 ALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVI 182 (473)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chhh
Q 045328 176 TLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGHE 254 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 254 (501)
.....++++.+++++++..++|..|++++..+++.........|..... ....| ..+. +.+.
T Consensus 183 ~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w----------------~~~s~~~~~ 245 (473)
T KOG1347|consen 183 GLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAW----------------SGFSGEFDS 245 (473)
T ss_pred HHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhh----------------hhhhHhhhh
Confidence 9999999999999999999999999999999999999999888875443 23333 3332 5778
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHH
Q 045328 255 WGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKAR 334 (501)
Q Consensus 255 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~ 334 (501)
+++.+++++|..+....++..+.+..+..|.+++...+++..++..++....++++.+++.+...++++.+|+|+++.+|
T Consensus 246 ~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar 325 (473)
T KOG1347|consen 246 WGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRAR 325 (473)
T ss_pred HHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhh
Confidence 89999999999999999999999999999999876789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHH
Q 045328 335 LATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINF 414 (501)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 414 (501)
.....+...++..+...+..+...++.+..+|++|+|+.+...+..++++...++++.+.+..++.++.|+.++..+.++
T Consensus 326 ~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl 405 (473)
T KOG1347|consen 326 VSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINL 405 (473)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHcccCC
Q 045328 415 YSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLVGKSN 478 (501)
Q Consensus 415 ~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (501)
.+..++++|....+....++|..|.|.++..+..+..........+.+|+++.++++++...+.
T Consensus 406 ~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~ 469 (473)
T KOG1347|consen 406 VAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASL 469 (473)
T ss_pred eeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhc
Confidence 9999999999999998888999999999999988888888888889999999999998877653
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=5.5e-34 Score=285.62 Aligned_cols=405 Identities=11% Similarity=0.019 Sum_probs=343.0
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHH
Q 045328 23 MTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTL 101 (501)
Q Consensus 23 i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 101 (501)
+.|.+.+...++++..+.+++...+++| +|++++|.++...++..++......|++++.++.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 6788889999999999999999999999 99999999999999988875555889999999999988 68889999999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Q 045328 102 QRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISI 180 (501)
Q Consensus 102 ~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~ 180 (501)
+.++.+.++.+++++++ +.+.+|+...+..+++. ..+..+..+..+...+.....+.+|+.+|++.++...+++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998876 78889998878766652 23566666666677778889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chhhHHHHH
Q 045328 181 AFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGHEWGILI 259 (501)
Q Consensus 181 i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 259 (501)
++|+.+ +++... ..|+.|+++++++++.+..+...++.++++..+.+. .+++ +++.+|+++
T Consensus 157 ~~~i~l-~i~~~~-~~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~k~ll 218 (416)
T PRK15099 157 LIGVAA-YYLCYR-LGGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSY----------------LKPSWDNGLAGQLG 218 (416)
T ss_pred HHHHHH-HHHHHH-HhcchHHHHHHHHHHHHHHHHHHHHHHHccceehHh----------------hhccCCHHHHHHHH
Confidence 999877 444443 249999999999999999887777665544321111 1222 788899999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 045328 260 RLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSL-MYTLPMALSSSVSTRVGNELGAGRPVKARLATV 338 (501)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~ 338 (501)
++|.|..+++...++....++.++++.. |++++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..+
T Consensus 219 ~~g~p~~~~~~~~~i~~~~~~~~l~~~~-g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~ 294 (416)
T PRK15099 219 KFTLMALITSVTLPVAYVMMRNLLAAHY-SWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIV 294 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC-CHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHH
Confidence 9999999999999999999999997433 48999999999999874 5788899999999999995 67889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHH
Q 045328 339 VAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFY 418 (501)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 418 (501)
+..+....++++.++.+++++++++.++.+|+ ++.+.+++++++++.++...+...+..+.+.++++......+.. .
T Consensus 295 ~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~-~ 371 (416)
T PRK15099 295 KALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQ-F 371 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H
Confidence 99999999999999999999999999999865 56678899999999999888888888788888888777777775 7
Q ss_pred HHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 419 LVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 419 i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
++.+++.+++.+. +|..|++++..+++++...+..+...+
T Consensus 372 ~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~~ 411 (416)
T PRK15099 372 TLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFLL 411 (416)
T ss_pred HHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888998888765 799999999999999999887766653
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=5.6e-29 Score=249.65 Aligned_cols=386 Identities=16% Similarity=0.148 Sum_probs=336.2
Q ss_pred cChh-HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 045328 51 LGSL-ELAGGALAIGFTNITGYSVL-SGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALL-WFKLEPLML 127 (501)
Q Consensus 51 lg~~-~~~~~~~~~~l~~~~~~~~~-~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~ 127 (501)
+|.. +..+|.++.++..++...+. .+++++..|..++.. ++++++.++..+..+.+..+.+++++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5654 45578999999998844554 568999999999998 8899999999999998888888888876 888899988
Q ss_pred Hc--CCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC---cchhH
Q 045328 128 SL--HQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLG---VPGIA 202 (501)
Q Consensus 128 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g---~~g~a 202 (501)
.+ +.+++..+.+.++++++.+..++..+..++.+++++++|+..+....++.++..++..+++.. ..| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHH
Confidence 87 457888899999999999999999999999999999999999999999988776654333333 567 88999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCcchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 045328 203 ISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTIL 282 (501)
Q Consensus 203 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~ 282 (501)
+|.+++.++..++.....+|.+...+.. .++ +.+..|++++...|..+.....++...+++.+
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~----------------~~~-~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~l 224 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPK----------------FDW-RDPNLKRFLKLAIPLLLSSSISQINILVDRAL 224 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCccccc----------------CCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999888776544331111 222 56779999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 045328 283 AGYLRNPQAALATSALVIQTTSLMYTL-PMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREA 361 (501)
Q Consensus 283 ~~~~~~g~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (501)
.+.++ +..+++++.++++.++...+ ..+++++..|.+++...++|.++.++..++.++..+.+.+|.+++++.++++
T Consensus 225 aS~l~--~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~ 302 (451)
T PF03023_consen 225 ASFLG--EGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEP 302 (451)
T ss_pred HhCCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 99986 88999999999999998755 5799999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC----cHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHHHHHHHHHHhcccch
Q 045328 362 WGRVFTN----DVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFV 437 (501)
Q Consensus 362 i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~ 437 (501)
+++++.. |.|..+....++.+++++.++.+++......+++.||+|.+++.++.+ .++++.+.+.+... +|..
T Consensus 303 iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~-~~lni~l~~~l~~~--~g~~ 379 (451)
T PF03023_consen 303 IVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVIS-VVLNIILSILLVPF--FGVA 379 (451)
T ss_pred HHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHH-HHHHHHHHHHHHHH--HHHH
Confidence 9998852 566688899999999999999999999999999999999999999998 77888888777655 7999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 438 GLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 438 G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
|+++++.++..+..++....++|+
T Consensus 380 Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 380 GLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988888776
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=8e-28 Score=236.76 Aligned_cols=421 Identities=14% Similarity=0.091 Sum_probs=356.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChh-HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhhhCCCChhH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSL-ELAGGALAIGFTNITGYSVLSG-LAMGMEPLCGQGFGSRNLSL 96 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~-~~~~~~~~~~l~~~~~~~~~~g-l~~~~~~~is~~~g~~~~~~ 96 (501)
...++|.+.-....++++.+.+++...+++. +|.. ...++.+++++.+++...+..| ++++..|...++..+++.|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 4557788888888999999999999999999 8984 5668999999999986666655 79999999999998887788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC-C--CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHH
Q 045328 97 VSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLH-Q--TPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPL 172 (501)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~-~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (501)
.++..+........+.+.++++ .++.+.+..... . +++....+....+++.+.+++.++.....+.+++.+|+..+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 8877777776777777777877 556666663442 2 23333468888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCcch
Q 045328 173 MWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLG 252 (501)
Q Consensus 173 ~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (501)
....+..++..+.....+.........+.+++..++.+.+.++.+...+|.+-..++. ..+ +.
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~----------------~~~-~~ 228 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPR----------------FGF-KD 228 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC----------------CCC-Cc
Confidence 9999999888775555555443224678999999999999999999887655333222 233 66
Q ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHhhcCCChH
Q 045328 253 HEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYT-LPMALSSSVSTRVGNELGAGRPV 331 (501)
Q Consensus 253 ~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~-~~~~~~~~~~p~~s~~~g~~~~~ 331 (501)
+.+|++.+.-.|..++....++...+|+.+.+.+. +.+++.++.+.++.++... +..+++++..|.+|++..++|.+
T Consensus 229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~--~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~ 306 (518)
T COG0728 229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLA--EGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWP 306 (518)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChH
Confidence 89999999999999999999999999999999996 8899999999999999985 55999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC----cHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCc
Q 045328 332 KARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTN----DVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPG 407 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 407 (501)
+.++..+.+++.+++.++|.++++.++++++++++.. +++........+..++++.++..+..+....+++.+|+|
T Consensus 307 ~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~k 386 (518)
T COG0728 307 EFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTK 386 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCC
Confidence 9999999999999999999999999999999998842 455578889999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhcC
Q 045328 408 IGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKTD 462 (501)
Q Consensus 408 ~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~ 462 (501)
.++++.+++ .++++.+.+.+. +.+|..|++++..++..+.+.+.++..+|+.
T Consensus 387 tP~~i~ii~-~~~n~~l~~~l~--~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 387 TPMKIAIIS-LVVNILLNLLLI--PPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred cChHHHHHH-HHHHHHHHHHHH--hhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999998 778888875554 4479999999999998888888888777653
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=6e-28 Score=247.62 Aligned_cols=398 Identities=11% Similarity=0.075 Sum_probs=321.5
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVS 98 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~ 98 (501)
.++..+.+.+..++++...+.+++...+++| +|++++|.++.+..+.+++......|++++.. |.. +++ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~~-~~~----~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QRQ-DIS----H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hcc-cCC----H
Confidence 4678889999999999999999999999999 99999999999999999885666778877653 221 112 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Q 045328 99 LTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTL 177 (501)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i 177 (501)
+.....+.+..+.+++++++ +.+.+++..++ ++++. ...+++.++..++..+.....+.+++.++++.....+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFY-HNPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CChhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455566667777766655 45555555444 44443 34577778888888888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCcchhhHHH
Q 045328 178 ISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGI 257 (501)
Q Consensus 178 ~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (501)
...++..++.+.+.. .+.|+.+.+++.+++..+..+...+..+ ++ .+++ ..+ +++..|+
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~-~~-~~~~-----------------~~~-~~~~~k~ 208 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGR-KI-YRPA-----------------LHF-SLASVKP 208 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhc-cc-CCcc-----------------cee-cHHHHHH
Confidence 888887777666554 3789999999999998887765433332 22 2111 112 6778999
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCChHHHHHH
Q 045328 258 LIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLP-MALSSSVSTRVGNELGAGRPVKARLA 336 (501)
Q Consensus 258 ~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~p~~s~~~g~~~~~~~~~~ 336 (501)
+++++.|...+++..++...+|+++++.+. |++++|.|+.+.++.+...... ..++++..|.+++. ++|.++.++.
T Consensus 209 ll~~~~~~~~~~~~~~~~~~~d~~~lg~~l-g~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~ 285 (492)
T PRK10459 209 NLSFGAWQTAERIINYLNTNIDTILIGRIL-GAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVG 285 (492)
T ss_pred HHhhhHHHHHHHHHHHHHhcCchhhhhHhh-chHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHH
Confidence 999999999999999999999999999987 7999999999999998765544 55788999999986 5788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHH
Q 045328 337 TVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYS 416 (501)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 416 (501)
.++..+....+++|+++++.+++++++.++.+++ +..+...++++++..++..........+++.||+|..++.+++.
T Consensus 286 ~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~ 363 (492)
T PRK10459 286 FLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK 363 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH
Confidence 9999999999999999999999999999988754 67789999999999999999999999999999999999999887
Q ss_pred HHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 417 FYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 417 ~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
.++.+|..+.+... +|..|+++++.+++.+...+..+...|
T Consensus 364 -~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 364 -TFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -HHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677776665543 699999999999999988888876633
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=4.1e-25 Score=226.09 Aligned_cols=403 Identities=17% Similarity=0.185 Sum_probs=316.5
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhH
Q 045328 18 DELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSL 96 (501)
Q Consensus 18 ~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 96 (501)
+..+++.|.+.....+++...+.+++....++| +|++++|.++.+.++..++......|++.+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 346788999999999999999999999999999 9999999999999999999666779999999999999876655555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 045328 97 VSLT-LQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWS 175 (501)
Q Consensus 97 ~~~~-~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (501)
.... .........+.+++.........+. ++ .....+++..+..+.........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 5544 4444444444444433332222222 12 22334677888899999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCc-chhh
Q 045328 176 TLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSS-LGHE 254 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 254 (501)
.+.+ ..-+...+.+. .....+..++...+..........+..++++...+ +.++ .++.
T Consensus 153 ~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~ 211 (480)
T COG2244 153 IVSS-IFLLAAVFALL---FAALGLAVWALVLGAVVSLLVLLILLGKKKRGLKR-----------------PILRFSLAL 211 (480)
T ss_pred HHHH-HHHHHHHHHHH---HHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccc-----------------cccCchhHH
Confidence 5444 11111111121 13455667777777777666665555422221111 1111 3789
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHH
Q 045328 255 WGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKAR 334 (501)
Q Consensus 255 ~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~ 334 (501)
.|+.+++|.|...++....+...+|+++++++. |++++|.|+.+.++......+..+++.+..|.+++.++++|.++.+
T Consensus 212 ~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l-~~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~ 290 (480)
T COG2244 212 LKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFL-GPAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALK 290 (480)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHh-hhhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 999999999999999999999999999999998 7999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHH
Q 045328 335 LATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINF 414 (501)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 414 (501)
+..+++.++...++.|..+++.++++++..++.+++ +..+...+.++++..++.++.......+++.|+++..++.+.
T Consensus 291 ~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 368 (480)
T COG2244 291 KLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISL 368 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHH
Confidence 999999999999999999999999999999998876 344889999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHH
Q 045328 415 YSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVV 458 (501)
Q Consensus 415 ~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~ 458 (501)
.+ .+.++.+.+.+... +|..|+..+. .+.........+..
T Consensus 369 ~~-~i~~~~l~~~li~~--~g~~g~~~a~-~~~~~~~~~~~~~~ 408 (480)
T COG2244 369 IS-ALLNLILNLLLIPR--FGLIGAAIAT-ASVIALALLLFYIL 408 (480)
T ss_pred HH-HHHHHHHHhHHHHh--hhhhhHHHHH-HHHHHHHHHHHHHH
Confidence 98 56777777766554 6889988888 44333333333333
No 16
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.88 E-value=2e-20 Score=187.83 Aligned_cols=209 Identities=24% Similarity=0.250 Sum_probs=200.3
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChH
Q 045328 252 GHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPV 331 (501)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~ 331 (501)
++..|+++++++|.+++++.......+|+.++|+++ ++++|+-+++.++..+...+..+++.+..+.+++++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 558899999999999999999999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHH
Q 045328 332 KARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGAT 411 (501)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 411 (501)
++++....++..+++++++..+....+++++..++.+++|+.+.+.+|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHH-hc-ccchhhhHHHHHHHHHHHHHHHHHHHhcCh
Q 045328 412 INFYSFYLVGAPLAIVLAFV-WK-LGFVGLCYGLLGAQIACVVSILTVVFKTDW 463 (501)
Q Consensus 412 ~~~~~~~i~~i~~~~~l~~~-~~-~g~~G~~~a~~i~~~i~~~~~~~~~~~~~~ 463 (501)
.++++ .++++.+.+++.+. ++ +|+.|+++|+.+++.+..++..+++.|.+.
T Consensus 171 ~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 171 ILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 99998 88999999999988 46 999999999999999999999988877553
No 17
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.88 E-value=1.7e-20 Score=188.18 Aligned_cols=208 Identities=21% Similarity=0.119 Sum_probs=195.2
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
-++..|++++.++|.+++++...+...+|+.++++++ |++++++.+++.++.++...+..+++.+..+.+++++|+||+
T Consensus 4 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~-g~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 82 (441)
T PRK10367 4 LTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLD-SPVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNP 82 (441)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 3567899999999999999999999999999999996 588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchH
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGA 410 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (501)
+++++..+.++.++++.+++..+....+.+++..+++.|+|+.+.+.+|+++..++.++..+......++++.||++.++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 162 (441)
T PRK10367 83 QALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPV 162 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 99999999999999999999988888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 411 TINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 411 ~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
+.++++ .++++++.+++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 163 ~~~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 163 ILLVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 6889999999988888999999999999999988877666654
No 18
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.87 E-value=4.4e-20 Score=186.93 Aligned_cols=208 Identities=19% Similarity=0.176 Sum_probs=192.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh
Q 045328 15 EVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL 94 (501)
Q Consensus 15 ~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 94 (501)
..++..|++++.++|.++.++.......+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|+
T Consensus 230 ~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~~ 308 (464)
T PRK00187 230 PSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGRL 308 (464)
T ss_pred CCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3566799999999999999999999999999999999999999999999999988 899999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCC
Q 045328 95 SLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQ--TP---DIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGT 168 (501)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~ 168 (501)
+++++..+.++.++.+.+++.+++ +.+.+++.+.+.. ++ |+.+.+..|+++.+++.++..+..++.+++|+.|+
T Consensus 309 ~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~ 388 (464)
T PRK00187 309 LEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKD 388 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCc
Confidence 999999999999999999988876 7789999988853 33 68889999999999999999999999999999999
Q ss_pred CcHHHHHHHHHH-HHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 045328 169 TWPLMWSTLISI-AFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVT 223 (501)
Q Consensus 169 ~~~~~~~~i~~~-i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 223 (501)
++.+++.+++.. ++++++++++.+.+++|+.|+++++.+++.+..+.....++++
T Consensus 389 ~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 389 ARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 8999999999987789999999999999999988876666544
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.86 E-value=3.9e-20 Score=187.43 Aligned_cols=207 Identities=20% Similarity=0.174 Sum_probs=192.3
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
+.+..|++++.++|.+++++...+...+|+.++++++ ++++|+++++.++..+...+..+++++..+.+++++|++|+
T Consensus 24 ~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~ 101 (478)
T PRK10189 24 RVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDR 101 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 4556999999999999999999999999999999986 89999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccC--CcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcc
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFT--NDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGI 408 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 408 (501)
+++++..+.++.+++.++++.+++.+++++++..++. .|+|+.+.+..++++..++.++..+.....+++++.||++.
T Consensus 102 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~ 181 (478)
T PRK10189 102 RRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKI 181 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHH
Confidence 9999999999999999999999999999999999995 58999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHH----hcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 409 GATINFYSFYLVGAPLAIVLAFV----WKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 409 ~~~~~~~~~~i~~i~~~~~l~~~----~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
+++.++.+ +++++++.+.+... +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 182 ~~~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 182 PLLINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred hHHHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999996 78889998888764 37899999999999999988877655543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.86 E-value=5.2e-20 Score=186.08 Aligned_cols=209 Identities=16% Similarity=0.132 Sum_probs=196.6
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
+++..|++++.++|.+++++...+...+|+.+++++. |++++++++++.++..+...+..+++.+..+.+++++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~-g~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYV-GAEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 5678899999999999999999999999999999974 489999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchH
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGA 410 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (501)
|++++..+.++.++++++++.++++.++++++..++..|+|+.+.+.+++++..++.++..+......++++.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 411 TINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 411 ~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
..++.+ .++++++.+++...+++|+.|+++|+.+++.+..++..++++++
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~ 215 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSS 215 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 999998 68899999999888789999999999999999988877666543
No 21
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.85 E-value=3.2e-19 Score=181.15 Aligned_cols=208 Identities=18% Similarity=0.119 Sum_probs=193.5
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
.++.+|+++++++|.+++++...+...+|+.++++++ ++++++++++.++..+...+..+++.+..|.+++++|++|.
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 5788999999999999999999999999999999986 88999999999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchH
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGA 410 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (501)
++.++..+.++.+.+.++++.+++++++++++..++..|+|+.+.+..++++.+++.++..+.....+++++.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH----hcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 411 TINFYSFYLVGAPLAIVLAFV----WKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 411 ~~~~~~~~i~~i~~~~~l~~~----~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
+.++++ .++++++.+++.+. +.+|+.|+++++.+++++..++..++.+|+
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999998 57889988887643 457999999999999999999888777654
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.82 E-value=1.4e-17 Score=171.55 Aligned_cols=207 Identities=16% Similarity=0.094 Sum_probs=187.2
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh
Q 045328 15 EVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL 94 (501)
Q Consensus 15 ~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 94 (501)
..++..|++++.+.|..++++...+...+|+.+.+.+|++++++|+.+.++..+....+..+++++..|.+++.+|++|+
T Consensus 217 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~ 296 (502)
T TIGR01695 217 FRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNW 296 (502)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 35567899999999999999999999999998855599999999999999998873456789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC
Q 045328 95 SLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQ----TPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTT 169 (501)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~ 169 (501)
++.++.++++..+....+++.+++ ..+++++..++.+ ++|..+.+..++++++++.++..+...+.+.+++.||+
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~ 376 (502)
T TIGR01695 297 NELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDT 376 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCC
Confidence 999999999999999999998876 7889999988865 56778889999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 045328 170 WPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVT 223 (501)
Q Consensus 170 ~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 223 (501)
+.+++.++.+.+++++++++++. .+|+.|+++++.+++.+..++..++.+|+
T Consensus 377 ~~~~~~~~~~~~i~i~l~~~l~~--~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 377 RTPFINSVISVVLNALLSLLLIF--PLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998876 57999999999999999999887777544
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.81 E-value=1.3e-16 Score=150.59 Aligned_cols=272 Identities=16% Similarity=0.203 Sum_probs=210.6
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHH
Q 045328 23 MTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTL 101 (501)
Q Consensus 23 i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 101 (501)
+.|.+.....+++...+.+++...+++| +|++++|.++...++.+++......|++++..+.+++...+ +++.+.+.
T Consensus 1 l~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 1 LLKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3577888999999999999999999999 99999999999999999885566899999999999887432 34555555
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Q 045328 102 QRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIA 181 (501)
Q Consensus 102 ~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i 181 (501)
........+.+++....... ...+..++ ... .+........++........+++++.++.+.....++...+
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~----~~~~~~~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLI----ASFFGNPS-LSL---ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSL 150 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHcCCch-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555444444433333222 12333332 222 12222222225677888889999999999999999999988
Q ss_pred HHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCcchhhHHHHHHH
Q 045328 182 FHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRL 261 (501)
Q Consensus 182 ~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (501)
...++..+++.. +.++.+..++..++..+..++..++.+|+.+. ++ ... +++..|+++++
T Consensus 151 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~-~~~~~~~~~~~ 210 (273)
T PF01943_consen 151 LSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRP--RF----------------SFF-SKKFFKEILRF 210 (273)
T ss_pred HHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--cc----------------ccc-chHHHHHHHHH
Confidence 887776666654 44588999999999999988888887654432 11 222 68899999999
Q ss_pred HhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q 045328 262 AIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNEL 325 (501)
Q Consensus 262 ~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~ 325 (501)
+.|..++++...+....|.++++++. |++++|.|+++.++......+..++.++..|.+++.+
T Consensus 211 ~~~~~~~~~~~~~~~~~d~~ii~~~~-g~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l~ 273 (273)
T PF01943_consen 211 GLPLFLSSLLSWLYSQIDRLIIGYFL-GPEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRLW 273 (273)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999999999998 7999999999999999999999999999999999863
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.76 E-value=3.2e-16 Score=153.26 Aligned_cols=194 Identities=23% Similarity=0.220 Sum_probs=178.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 045328 264 PSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGL 343 (501)
Q Consensus 264 p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~ 343 (501)
|.+++++...+...+++.++++++ ++++++|+.+.++..+...+..+++++..|.+++++|++|++++++..+....+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 678889999999999999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHH
Q 045328 344 ALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAP 423 (501)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 423 (501)
....+++.++++.++++++..+++.|++..+.+..++++++++.++.+++....+++++.||.+...+.++++ .++.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888888999999999999999999999999999999999999999997 567888
Q ss_pred HHHHHHH-Hhc-ccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 424 LAIVLAF-VWK-LGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 424 ~~~~l~~-~~~-~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
..+.+.. ..+ +|+.|++++..+++.+..++..++.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877776 555 779999999999999988888776655
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.75 E-value=2.9e-15 Score=150.73 Aligned_cols=211 Identities=17% Similarity=0.144 Sum_probs=193.9
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCC
Q 045328 13 MPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSR 92 (501)
Q Consensus 13 ~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~ 92 (501)
.....+..|++++...|..++....++...+|+.+.+++++.+++++.++.++.++....+..++++...|..++...++
T Consensus 190 ~~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~ 269 (451)
T PF03023_consen 190 FDWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEG 269 (451)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445669999999999999999999999999999999999999999999999999867888899999999999999999
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcC
Q 045328 93 NLSLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLH----QTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKG 167 (501)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 167 (501)
|.++.++.+++.+...+.+.++.++. ..+++|++..+. -++|..+.....++++++++++..+...+...+.+.+
T Consensus 270 d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~ 349 (451)
T PF03023_consen 270 DWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALG 349 (451)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999976 889999998774 3567778888999999999999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccC
Q 045328 168 TTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRA 225 (501)
Q Consensus 168 ~~~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~ 225 (501)
|+|.++..++++.++|++++.++.. .+|+.|.++++.++..+..++..+..+|+..
T Consensus 350 ~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 350 DTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred CcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999988887 6899999999999999999998888866544
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.73 E-value=4e-14 Score=140.26 Aligned_cols=214 Identities=14% Similarity=0.075 Sum_probs=193.0
Q ss_pred CCchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 045328 11 PTMPEVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFG 90 (501)
Q Consensus 11 ~~~~~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g 90 (501)
++........|++.+...|..++...+++..++|+.+.+.+.+.+.+.+.++.++.++....+..++++...|..|++..
T Consensus 222 p~~~~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 222 PRFGFKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 33333447899999999999999999999999999999999999999999999999999779999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q 045328 91 SRNLSLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLH----QTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRS 165 (501)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 165 (501)
++|.++.++..+.++.++++.+++.++. ..+++|+...+. -+++........++.+++++++..+..++...+.+
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976 889999998773 24566677788999999999999999999999999
Q ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCC
Q 045328 166 KGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRAS 226 (501)
Q Consensus 166 ~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~ 226 (501)
.+|+|.++...+++.++|+.+++.+.. .+|..|.++++.++.++++.+.++..+|+...
T Consensus 382 r~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~~~ 440 (518)
T COG0728 382 REDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRLVY 440 (518)
T ss_pred ccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999977666 68889999999999999999888877665544
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.73 E-value=6.1e-18 Score=146.42 Aligned_cols=162 Identities=25% Similarity=0.341 Sum_probs=157.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 045328 264 PSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGL 343 (501)
Q Consensus 264 p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~ 343 (501)
|..++++.+.+...+++.++++++ ++++++++++.++.++..++..+++++..+.+++++|++|++++++..+.++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 788999999999999999999995 999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHH
Q 045328 344 ALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAP 423 (501)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~ 423 (501)
...++++.++.+.++++++..+|++|+|+.+.+.+++++..++.++..+.....+++++.||++..++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 045328 424 LAIV 427 (501)
Q Consensus 424 ~~~~ 427 (501)
+.|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.71 E-value=3.2e-15 Score=153.55 Aligned_cols=202 Identities=17% Similarity=0.197 Sum_probs=173.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChh---------HHHHH-HHHHHHHHHHHHHHHHHHHhhHHHH
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSL---------ELAGG-ALAIGFTNITGYSVLSGLAMGMEPL 84 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~---------~~~~~-~~~~~l~~~~~~~~~~gl~~~~~~~ 84 (501)
.++..|++++.++|..++++...+...+|+.++++ ++++ .+|.+ +.+.++..+. ..+..+++++..|.
T Consensus 220 ~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~ 298 (488)
T TIGR02900 220 GKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPD 298 (488)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHH
Confidence 45689999999999999999999999999999988 5322 22222 3455666666 67788999999999
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q 045328 85 CGQGFGSRNLSLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYL 163 (501)
Q Consensus 85 is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 163 (501)
++++.|++|+++.++..++...++.+++++.++. ..+.+++..++.+++ .+.++++++++..++..+.....+.+
T Consensus 299 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l 374 (488)
T TIGR02900 299 ISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSIL 374 (488)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988876 778899988887543 35678999999999999999999999
Q ss_pred HhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 045328 164 RSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFV 222 (501)
Q Consensus 164 ~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 222 (501)
++.||+|..++.++++.+++++++++++....+|+.|+++++++++.+..++..++.+|
T Consensus 375 ~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 375 QGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988873337899999999999999999998887754
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.70 E-value=1.4e-17 Score=144.14 Aligned_cols=160 Identities=23% Similarity=0.355 Sum_probs=154.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHH
Q 045328 29 PIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILML 108 (501)
Q Consensus 29 p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~ 108 (501)
|.++++++..+...+|..+++++|++++++++++.++..+. ..+..|++.|..+.++|++|++|++++++..+.++.++
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 88999999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH-HHHHHH
Q 045328 109 LIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISI-AFHFPL 186 (501)
Q Consensus 109 ~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-i~~i~l 186 (501)
.+++++++++ +.+.+++..+++.++|..+.+.+|+++..+..++..+.....+++++.||++..++.++++. ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999987 88899999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 045328 187 IIY 189 (501)
Q Consensus 187 ~~~ 189 (501)
+++
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.68 E-value=2.5e-13 Score=139.60 Aligned_cols=201 Identities=16% Similarity=0.142 Sum_probs=174.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL 94 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 94 (501)
.++..|++++++.|...+++...+...+|+.++++ +|++++|.|+.+.++.++....+...++....|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 45678999999999999999999999999999999 89999999999999988764555666777888988886 6788
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHH
Q 045328 95 SLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLM 173 (501)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (501)
++.++.+.+...+...++++.++. ..+++|++.++.+++ +..+...++++++...+..+.......+++.||+|...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 899999999999999999998875 778899988876544 56678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 045328 174 WSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFV 222 (501)
Q Consensus 174 ~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 222 (501)
..+++..++.++..+++.. .+|+.|+++++.+++.+......++..|
T Consensus 358 ~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888888877666654 6799999999999999998888777643
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.65 E-value=4.9e-14 Score=141.44 Aligned_cols=200 Identities=7% Similarity=-0.027 Sum_probs=172.8
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCC
Q 045328 15 EVLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRN 93 (501)
Q Consensus 15 ~~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~ 93 (501)
.+++..|++++++.|..++++...+....|+.++++ +|++++|.|+.+.++...+...+..+++++..|.+++. +|
T Consensus 209 ~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~ 285 (416)
T PRK15099 209 WDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TE 285 (416)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CC
Confidence 356778999999999999999999999999999985 99999999999999977543788999999999999995 56
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHH
Q 045328 94 LSLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPL 172 (501)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (501)
+++.++..++........+++.+++ ++++++++.++.+++ .+.+.+++++++++..+...+..+...+.+.++.+..
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~ 363 (416)
T PRK15099 286 KRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFY 363 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888899999999988888888866 688999999887655 3446678889888888888877777777788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHH
Q 045328 173 MWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMF 221 (501)
Q Consensus 173 ~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~ 221 (501)
....+...++++++++++++ .+|..|+++++.+++.+...++.+...
T Consensus 364 ~~~~~~~~~l~i~l~~~li~--~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 364 ILAEVSQFTLLTGFAHWLIP--LHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888899999999887 589999999999999999988776654
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.63 E-value=1.4e-12 Score=121.55 Aligned_cols=248 Identities=17% Similarity=0.228 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 045328 39 LKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIAL 117 (501)
Q Consensus 39 ~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 117 (501)
..+++..++++| +|++++|.++....+..+.......|+++.... . .++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR----S-AARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH----h-hccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888999 999999999999999998844456777666655 2 2456666777766666554444444433
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045328 118 LWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLG 197 (501)
Q Consensus 118 l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g 197 (501)
+.. .+..++ .+++. ..++....+..+...........+++++|.+..........+....+...+... +.+
T Consensus 77 ~~~---~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 LAI---LIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred HHH---HHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 311 111223 33332 234556667778888889999999999999999999999988775554444443 458
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCCCCcchhhHHHHHHHHhhhHHHHHHHHHHHH
Q 045328 198 VPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYE 277 (501)
Q Consensus 198 ~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 277 (501)
+.+..++..++.++..++.....+ ++.+.+ + +.+..| ..+.+.|..+.++..+....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~---~~~~~~-~~~~~~~~~~~~~~~~~~~~ 204 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLR--RKLRLS-----------------F---KFSWRR-LLKYGLPFSLSSLLSWLLSQ 204 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--cccCCC-----------------c---hhhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 888889988888887776555332 111111 1 233334 79999999999999999999
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHh
Q 045328 278 FMTILAGYLRNPQAALATSALVIQTTSLMY-TLPMALSSSVSTRVGNE 324 (501)
Q Consensus 278 i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~-~~~~~~~~~~~p~~s~~ 324 (501)
+|.++++.+. |.+++|.|+++.++..... .+..++++...|.++|.
T Consensus 205 ~~~~li~~~l-~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 205 IDRLLIGYFL-GPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999955 5999999999999999888 89999999999999863
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.57 E-value=1.4e-12 Score=133.75 Aligned_cols=187 Identities=21% Similarity=0.256 Sum_probs=171.2
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh
Q 045328 16 VLDELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL 94 (501)
Q Consensus 16 ~~~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 94 (501)
.++..|++++.++|..++++...+.+.+|++++++ +|++++|.|+.+.++.... ..+...++....|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 57889999999999999999999999999999999 8999999999888888887 888999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHH
Q 045328 95 SLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLM 173 (501)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 173 (501)
++.++..++........+++..+. ..+++|++..+.+++. ..+...+.++++..++..+.......+++.|+.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999976 7888899988776553 2267788899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHH
Q 045328 174 WSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFIT 208 (501)
Q Consensus 174 ~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~ 208 (501)
..+.++.++|++++++++. .+|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~--~~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIP--RFGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHH--hhhhhhHHHHH-HH
Confidence 9999999999999999988 67999999999 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.30 E-value=1.6e-08 Score=102.84 Aligned_cols=428 Identities=12% Similarity=0.000 Sum_probs=252.4
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHH
Q 045328 24 TDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTN-ITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTL 101 (501)
Q Consensus 24 ~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~-~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~ 101 (501)
.+.+.-.++.+++..+.+++-+-++-| ++++.+|..++-..+.. -+....-.++-.+..+.-.+...++|.++..+..
T Consensus 4 ~~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~ 83 (549)
T PF04506_consen 4 AKGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLL 83 (549)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhcc
Confidence 345566788899999999998777777 99999988754443332 2224445677666665433332222334444444
Q ss_pred HHHHHHHHHHHHHHHHHHH--hhHHHH----HHcCCC-HH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc----C
Q 045328 102 QRTILMLLIASIPIALLWF--KLEPLM----LSLHQT-PD---IARVAGVYCRYAIPDLVANSFLHPLRIYLRSK----G 167 (501)
Q Consensus 102 ~~~~~~~~~~~~~~~il~~--~~~~i~----~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~----~ 167 (501)
+....+..+.+++++.+++ ...|.. .+.... ++ ..+.....+.+...+.....+...+....|.. -
T Consensus 84 wls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~ 163 (549)
T PF04506_consen 84 WLSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKL 163 (549)
T ss_pred cccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhe
Confidence 4433444444443332211 111111 111111 11 11222233444455555555555554444444 4
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHhh-cCCc-----ch-hHHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCcccCCCC
Q 045328 168 TTWPLMWSTLISIAFHFPLIIYLTFYL-SLGV-----PG-IAISNFITNFNSLFFLLCYMFVTRASD-EPLSTPLKTSQT 239 (501)
Q Consensus 168 ~~~~~~~~~i~~~i~~i~l~~~li~~~-~~g~-----~g-~a~a~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 239 (501)
|.+.-........+++..+.+...... +++. .+ +.++..+++....+............. ..+ +..
T Consensus 164 Rv~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~------s~~ 237 (549)
T PF04506_consen 164 RVKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSF------SDL 237 (549)
T ss_pred eeEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccch------hhc
Confidence 444444444444444433322221110 1111 11 233444455444332221111111111 111 000
Q ss_pred CCCCcCCCCCcchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHHHHHH-HHhHHHHHHH
Q 045328 240 LPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGY--LRNPQAALATSALVIQTTSLM-YTLPMALSSS 316 (501)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~--~~~g~~~~a~~~~~~~i~~~~-~~~~~~~~~~ 316 (501)
+ |.....+-++...-+++++........++.-.+...-|.+++.. +. ..++-|.|+++++..+++ -.+...+-.+
T Consensus 238 l-p~i~~~~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~-t~~~QGvY~lv~N~GSLvaR~lF~PiEEs 315 (549)
T PF04506_consen 238 L-PKISSGNPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLL-TFEDQGVYALVSNYGSLVARLLFQPIEES 315 (549)
T ss_pred c-ccccccccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccC-CHHHhhHHHHHhhHHHHHHHHHhCcHHHH
Confidence 0 00000000011123677888888888888888999999999998 76 489999999999998877 4455789999
Q ss_pred HHHHHHHhhcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHH
Q 045328 317 VSTRVGNELGAGRP---------VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCE 387 (501)
Q Consensus 317 ~~p~~s~~~g~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~ 387 (501)
.....++...+++. ++..+.....++....++++...+...+++.+..++.++.=....+...++..+...
T Consensus 316 ~~~~Fsk~l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi 395 (549)
T PF04506_consen 316 SRLYFSKLLSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYI 395 (549)
T ss_pred HHHHHHHHhcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHH
Confidence 99999988776543 345666777788888888777777778888888887653322233688899999999
Q ss_pred hhcchhHHHHHHHhhcCCCcchHHHHHHH--HHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 388 LANCPQTTSCGILRGSARPGIGATINFYS--FYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 388 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~--~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
++.+++.+...+.++....+.....+-.- ..++.+..++++... ++|..|..+|.++.+.++.+.+..+++|
T Consensus 396 ~~la~NGi~EaF~~s~a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 396 PFLAINGITEAFVFSVASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999887766655332 233445566666654 6899999999999999999999888765
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.20 E-value=1.1e-09 Score=109.64 Aligned_cols=206 Identities=17% Similarity=0.085 Sum_probs=187.9
Q ss_pred hhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHhhcCCCh
Q 045328 252 GHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSL-MYTLPMALSSSVSTRVGNELGAGRP 330 (501)
Q Consensus 252 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~-~~~~~~~~~~~~~p~~s~~~g~~~~ 330 (501)
++..|++.+++.|..+....+.....++..++|+++ +.++++.+++++..+. .+.+..++..+..|..++++|.+++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 678899999999999999999999999999999997 6799999999988876 4667789999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchH
Q 045328 331 VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGA 410 (501)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 410 (501)
+.......++........++.+. ++.+.+++...+..|+++...+..+.++.....+.+.........+++.+++....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999998888877777754 55566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 411 TINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 411 ~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
++.... .++.+++.+++.+..++|..|+.++..+++.........+....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~ 230 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLS 230 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheec
Confidence 999997 88999999999999999999999999999999888777766543
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=7.1e-07 Score=85.00 Aligned_cols=426 Identities=10% Similarity=-0.001 Sum_probs=246.0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhhhCCCChhHH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LGSLELAGGALAIGFTNIT-GYSVLSGLAMGMEPLCGQGFGSRNLSLV 97 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~~~~~~~~l~~~~-~~~~~~gl~~~~~~~is~~~g~~~~~~~ 97 (501)
.....+.+.-.+..++...+.++..+.++-| ++++.+|..++-..+..-. ....-.++.-|..+.-++. +++..+.
T Consensus 7 L~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sTiLFlsREair~A~l~~gs~~--~d~~te~ 84 (530)
T KOG2864|consen 7 LESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQSTILFLSREAIRLAELRIGSEP--ADTWTEF 84 (530)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHHHHHhhHHHHHHHhccCCCCC--CccHHHH
Confidence 4445566667777888888888776666666 9999999876655443322 1222344444444332222 1224455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHH
Q 045328 98 SLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPD--IARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWS 175 (501)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 175 (501)
.+..+.+.-+..+.++.+.-+|+. +....++ ..+.-..-+.+...+.+...+...+.-..|..-+.+.....
T Consensus 85 ~n~~wlS~~L~~~i~~~~i~~wl~------~~~s~d~i~~~p~y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~ 158 (530)
T KOG2864|consen 85 INLLWLSVPLQTAINVACIYFWLG------FLSSSDEISYSPLYAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRAIA 158 (530)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHH------HhhccchhhcCchHhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 555555555555555554433221 1111111 11111222334444444444555555555666666666666
Q ss_pred HHHHHHHHHHHHHHHHH-hh-cCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcc----cCCCCCCCCcCCCCC
Q 045328 176 TLISIAFHFPLIIYLTF-YL-SLGVPGIAISNFITNFNSLFFLLCYMFVTRASDEPLSTPL----KTSQTLPTSSLTNSS 249 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~-~~-~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 249 (501)
.-+..+++.++.+.... +. ..++.-.|+|.......-.+-+.+++.+.++ .++...|. ++-||-.++.+...|
T Consensus 159 e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~-s~~~~~~~~r~Sdllpk~~~n~~~~ff 237 (530)
T KOG2864|consen 159 EGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRG-SIPETEPFSRFSDLLPKVSENERGIFF 237 (530)
T ss_pred hHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcC-CcccccchhhhhhhccCCCCCCccccc
Confidence 66666666333333332 22 3445555666655555444422333332222 11111111 112222222222233
Q ss_pred cchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHhhcC
Q 045328 250 SLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRN-PQAALATSALVIQTTSLM-YTLPMALSSSVSTRVGNELGA 327 (501)
Q Consensus 250 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~-g~~~~a~~~~~~~i~~~~-~~~~~~~~~~~~p~~s~~~g~ 327 (501)
|++..|...+.-...++ -++...-+..+++...- .-++-|.|.++++..++. -++...+-.......++...+
T Consensus 238 -d~d~~~~~~s~~~Qs~l----KqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~ 312 (530)
T KOG2864|consen 238 -DNDLLKLTKSFTFQSFL----KQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSR 312 (530)
T ss_pred -cHHHHHHHHHHHHHHHH----HHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhc
Confidence 55555555555444444 44444556666553221 245668999999998766 455688999999999998888
Q ss_pred CChHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcC
Q 045328 328 GRPVKARLAT---VVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSA 404 (501)
Q Consensus 328 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g 404 (501)
++.|+.|+.. ...++....+++....+...+++.+..++.++.=....+...+++.++..++.+++.+..++..+.+
T Consensus 313 ~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~ 392 (530)
T KOG2864|consen 313 DNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVA 392 (530)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 7777666554 4556666666666666667778888888866432222356889999999999999999999999988
Q ss_pred CCcchHHHHHHH--HHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHhc
Q 045328 405 RPGIGATINFYS--FYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFKT 461 (501)
Q Consensus 405 ~~~~~~~~~~~~--~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~ 461 (501)
..+.....+-.- ..+..+.+.+++... +|..|..+|.++.+.++-+....++++.
T Consensus 393 t~~qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 393 TSRQIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred cHHHHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 766555433211 133456677777766 5889999999999999888887766653
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.94 E-value=6.2e-06 Score=75.43 Aligned_cols=314 Identities=13% Similarity=0.028 Sum_probs=188.1
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccC---hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh
Q 045328 18 DELKRMTDIGFPIAAMSLVNYLKNMVLVVCMGRLG---SLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL 94 (501)
Q Consensus 18 ~~~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~lg---~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~ 94 (501)
..++++.++-+|..+++++..+...+.+.-++|-. .+.+++|+++..+.-++ ......+......++ .+++
T Consensus 8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~-~sp~~~~~~igl~~V-----~s~r 81 (345)
T PF07260_consen 8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFF-ASPLSMFHHIGLVFV-----NSKR 81 (345)
T ss_pred chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHH-hChhhhhHHHHHHHh-----cchh
Confidence 45788999999999999999999999888888732 24589999999998887 666666655555444 3322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcH
Q 045328 95 SLVSLTLQRTILMLLIASIPIALL-WF-KLEPLM-LSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWP 171 (501)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~il-~~-~~~~i~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 171 (501)
++ ++..........+.+.+..++ +- +...++ ..++.+|++.+.++..+.++.+.-.+.++....++++--++++..
T Consensus 82 sr-r~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SR-RKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22 222222222222222222222 22 233333 456789999999999999999999999999999999987777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHH---HHHHHHHHH-HHHHHHHHhccCCCCCCCCcccCCCCCCCCcCCC
Q 045328 172 LMWSTLISIAFHFPLIIYLTFYLSLGVPGIAIS---NFITNFNSL-FFLLCYMFVTRASDEPLSTPLKTSQTLPTSSLTN 247 (501)
Q Consensus 172 ~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a---~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (501)
....++...+..+++..+++....-......+. ...+..+-+ .++.-|+..-.....+... .
T Consensus 161 V~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~--------------~ 226 (345)
T PF07260_consen 161 VGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSG--------------L 226 (345)
T ss_pred eehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC--------------c
Confidence 777776666555555545553211111222222 222222211 1111122111111111100 0
Q ss_pred CCcchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChh----hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045328 248 SSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQ----AALATSALVIQTTSLMYTLPMALSSSVSTRVGN 323 (501)
Q Consensus 248 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~----~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~ 323 (501)
.-++...+++++++..|.+.....+..+--+.++++++..+|. ++++...+.+.+.-..+.-..- ..+..|..-+
T Consensus 227 ~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~-~r~~~paf~~ 305 (345)
T PF07260_consen 227 EKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTE-LRAVYPAFDK 305 (345)
T ss_pred ccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHh-HHhhCchhhc
Confidence 0116778999999999999999999999999999999944354 6677666665555444433221 2233444432
Q ss_pred hhcCCChHHH--------HHHHHHHHHHHHHHHHHHHHHHH
Q 045328 324 ELGAGRPVKA--------RLATVVAIGLALLVSLFGLLGTT 356 (501)
Q Consensus 324 ~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 356 (501)
+ ++.++. +..+++....++.+++..+..++
T Consensus 306 ~---~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 306 N---NPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred c---CcccccccccCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 222222 33566666666666666655543
No 38
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.52 E-value=1.4e-05 Score=67.33 Aligned_cols=82 Identities=22% Similarity=0.201 Sum_probs=74.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 045328 143 CRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFV 222 (501)
Q Consensus 143 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 222 (501)
+++.+++.++.++....++.+++.||++.....++++.++|+++++++++ ++|..|+++++.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788899999999999999999999999999999999999999999987 7899999999999999999998888866
Q ss_pred ccCC
Q 045328 223 TRAS 226 (501)
Q Consensus 223 ~~~~ 226 (501)
+.+.
T Consensus 80 ~~~~ 83 (146)
T PF14667_consen 80 KIGI 83 (146)
T ss_pred HhCC
Confidence 5433
No 39
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.36 E-value=7.9e-05 Score=76.19 Aligned_cols=203 Identities=12% Similarity=0.027 Sum_probs=159.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCCh--
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR---LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNL-- 94 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~---lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~-- 94 (501)
-+++++++.....+.+...+.+.-|++++.. .+.++.|.|+++.++-+++.-.+...+..+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 5889999999999999999999999999998 47789999999999999988888889999998888888765433
Q ss_pred -------hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 045328 95 -------SLVSLTLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSK 166 (501)
Q Consensus 95 -------~~~~~~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 166 (501)
++..+.+...+.+...+++++..+ ...++.++.+++++.=..+.+...+++++..+|+.+++.+.-++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 345556677777777777766655 556666666664332222334667889999999999999999999998
Q ss_pred CCCcHHHHHH---HHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhc
Q 045328 167 GTTWPLMWST---LISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVT 223 (501)
Q Consensus 167 ~~~~~~~~~~---i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~ 223 (501)
...+.....+ ....++-+..++++... ++|..|..+|+++....-.+++..++++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8776664444 33456666777777775 78999999999999999999998888553
No 40
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.16 E-value=0.00027 Score=66.23 Aligned_cols=187 Identities=16% Similarity=0.118 Sum_probs=116.1
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 045328 260 RLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALATSALVIQTTSLMYTL-PMALSSSVSTRVGNELGAGRPVKARLATV 338 (501)
Q Consensus 260 ~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~-~~~~~~~~~p~~s~~~g~~~~~~~~~~~~ 338 (501)
|-+......+....+...+...++.+.. |+++.|.|+....+.++...+ ..|+.++..-..++...+ .+..++...
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l-~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYL-GPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 3444555556666555666666666666 699999999999999988776 578888888888776433 233333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHH
Q 045328 339 VAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFY 418 (501)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 418 (501)
.......+..+.......... +.++++.. ..+........++.........++++.++.+.....++...
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 149 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIAS------FFGNPSLS---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS- 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HcCCchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 333333333222222222222 33333321 12222222222577788888999999999999888888873
Q ss_pred HHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 419 LVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 419 i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
+..+.....+... ..+..+..++..++..+..++.....+|
T Consensus 150 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444433 2358889999999988888877777665
No 41
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.92 E-value=0.0057 Score=59.13 Aligned_cols=201 Identities=9% Similarity=0.002 Sum_probs=147.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHh--c-cChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMG--R-LGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSL 96 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~--~-lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~ 96 (501)
-++..+...-..-..+.-.+.+--|.+++. . ++-++-|.|.+..++-++....+...+.-....+.+|...++++|+
T Consensus 238 d~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~ 317 (530)
T KOG2864|consen 238 DNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQEN 317 (530)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhh
Confidence 466777777777788888888888888887 3 5667888899998888887778888888888888888887766665
Q ss_pred HHH---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHH
Q 045328 97 VSL---TLQRTILMLLIASIPIALL-WFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPL 172 (501)
Q Consensus 97 ~~~---~~~~~~~~~~~~~~~~~il-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 172 (501)
.++ ++...+.+...++++.+.+ ....++++.+.+++.=....+...+++++..+++.+++.+..+++.+....+..
T Consensus 318 ~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi 397 (530)
T KOG2864|consen 318 VKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQI 397 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHH
Confidence 554 4555666666666555554 556666777665443222334467899999999999999999999888766554
Q ss_pred H---HHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHh
Q 045328 173 M---WSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFV 222 (501)
Q Consensus 173 ~---~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~ 222 (501)
- ...++.++.-++++++++.+ +|..|..+|+++...+..+....++++
T Consensus 398 ~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 398 DKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 33445566777888888884 677899999888888887777666643
No 42
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.86 E-value=0.0029 Score=58.49 Aligned_cols=165 Identities=15% Similarity=0.138 Sum_probs=106.0
Q ss_pred HHHHHHhcCCChhhHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045328 278 FMTILAGYLRNPQAALATSALVIQTTSLMYTLP-MALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTT 356 (501)
Q Consensus 278 i~~~~~~~~~~g~~~~a~~~~~~~i~~~~~~~~-~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (501)
+...++++.. |+++.|.|+....+..+...+. .++.+...- ..++|.++.++..........+.+++..+...
T Consensus 6 ~~~~~lar~l-~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T PF13440_consen 6 LFLILLARYL-GPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAILAI 79 (251)
T ss_pred HHHHHHHHHC-CHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556655 5999999999999999888764 444443332 23356666666666665554444444433322
Q ss_pred hhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHHHHHHHHHHhcccc
Q 045328 357 LGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGF 436 (501)
Q Consensus 357 ~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~ 436 (501)
.... .+ ++++ ...++..+.+..++..........+++.+|.+........... ..+.....+. ..+.+.
T Consensus 80 ~~~~----~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 148 (251)
T PF13440_consen 80 LIAY----FF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLL-YLGLNL 148 (251)
T ss_pred HHHH----Hh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHH-HHHhhH
Confidence 2222 23 3333 3345566677777888889999999999999999998888733 3333333333 323488
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 045328 437 VGLCYGLLGAQIACVVSILTVVF 459 (501)
Q Consensus 437 ~G~~~a~~i~~~i~~~~~~~~~~ 459 (501)
.+..++..++..+..+......+
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 149 WSILLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 88899988888887776665433
No 43
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=97.84 E-value=0.00011 Score=61.90 Aligned_cols=79 Identities=19% Similarity=0.161 Sum_probs=71.9
Q ss_pred HHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 045328 380 LPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVF 459 (501)
Q Consensus 380 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~ 459 (501)
+++++++.++.++....++++++.||+|..++.++.+ .++++++.+.+. +++|..|+++++.+++.+..++..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~li--~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYILI--PRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999998 788899988884 4479999999999999999999988887
Q ss_pred hc
Q 045328 460 KT 461 (501)
Q Consensus 460 ~~ 461 (501)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 44
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=97.76 E-value=0.015 Score=53.87 Aligned_cols=156 Identities=13% Similarity=0.004 Sum_probs=112.0
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhc-CCChhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCC
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGY-LRNPQAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGR 329 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~-~~~g~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~ 329 (501)
+.....+++++-+|..+++....+.-++.+.-+++ ..+..+.+|.|+++..+.-++..+...+-++....+.. +
T Consensus 6 ~~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~ 80 (345)
T PF07260_consen 6 SLTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----K 80 (345)
T ss_pred ccchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----h
Confidence 45677899999999999999999999998877776 33334669999999999999998888877766665532 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhhh-hhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhc
Q 045328 330 PVKARLATVVAIGLALLVSLFGLLG-----TTLGREA-WGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGS 403 (501)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 403 (501)
.+ |+ ++.......++..+.+ .-.+... +-+++.-|+++.+.+...+.++.+..+++++.....+++.=.
T Consensus 81 rs--rr---~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~ 155 (345)
T PF07260_consen 81 RS--RR---KAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKH 155 (345)
T ss_pred hh--hH---HHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhc
Confidence 22 11 1222222222222222 2222233 445666788999999999999999999999999999888866
Q ss_pred CCCcchHHHHHHH
Q 045328 404 ARPGIGATINFYS 416 (501)
Q Consensus 404 g~~~~~~~~~~~~ 416 (501)
.++......++..
T Consensus 156 r~s~iV~~aSI~~ 168 (345)
T PF07260_consen 156 RHSWIVGSASIAD 168 (345)
T ss_pred cceeEeehHHHHH
Confidence 7777777776665
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.70 E-value=0.048 Score=51.56 Aligned_cols=320 Identities=13% Similarity=0.024 Sum_probs=178.4
Q ss_pred HHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhh
Q 045328 69 TGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIP 148 (501)
Q Consensus 69 ~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~ 148 (501)
+...++.|++...++.+|...=++|.+++...+.-...+....+..++.+.. ....+..... =.....
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf-------~~~~~~si~y-----k~l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF-------FVNNQYSIVY-----KILACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh-------hhcCchhHHH-----HHHHHH
Confidence 3356678888889999999888887777766665555544444444442111 1111221111 112333
Q ss_pred hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHHHHHhccCCCC
Q 045328 149 DLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYLSLGVPGIAISNFITNFNSLFFLLCYMFVTRASDE 228 (501)
Q Consensus 149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~ 228 (501)
..+..+..-+...++.+.++.+.....-.++.++.+.+..++- +.+..|..++..++..+.......+..|..+.+.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 4455566666778899999999999999999988888876654 4689999999999999988887777765443333
Q ss_pred CCCCcccCCCCCCCCcCCCCCcchhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcCCChhhHHHH------HHHHHHH
Q 045328 229 PLSTPLKTSQTLPTSSLTNSSSLGHEWGILIRLAIPSCMAVCLEWWWYEFMTILAGYLRNPQAALAT------SALVIQT 302 (501)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~~~~~~~~~~g~~~~a~------~~~~~~i 302 (501)
+. .+ | .+ +..+-=...++......+.-.+|+.+-=.-++|.+..+. |.+..-.
T Consensus 217 ~i-----------------~F-d--FL-~~~~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ 275 (467)
T COG4267 217 RI-----------------GF-D--FL-LYRRKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFY 275 (467)
T ss_pred cc-----------------ce-e--hh-hhhhcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHH
Confidence 22 11 1 11 111222333445556666666666553332222222221 3332222
Q ss_pred HHHHHHhH-----HHHHHHHHHHHHHhh----cCCCh-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Q 045328 303 TSLMYTLP-----MALSSSVSTRVGNEL----GAGRP-------VKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVF 366 (501)
Q Consensus 303 ~~~~~~~~-----~~~~~~~~p~~s~~~----g~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 366 (501)
......|. ..+-+...+.--+.+ |.+.. ++.....+..+.-.+-+-...++.++++++.+...+
T Consensus 276 ayl~~iPs~vvF~i~lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~ 355 (467)
T COG4267 276 AYLFIIPSMVVFLISLETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWF 355 (467)
T ss_pred HHHHhcchhheeeeeeeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222222 223333333322221 22222 222333333344444555677888899999988877
Q ss_pred CCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHHHHHHHH
Q 045328 367 TNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLA 429 (501)
Q Consensus 367 ~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~ 429 (501)
.-++ ...+.+.+-.++.-+.......-.+.--..+-+..+..+..- .+.+..+.++..
T Consensus 356 ~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 356 GLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred ChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 6543 345566666666666655555555555566666666555553 445555555443
No 46
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=83.86 E-value=1.4 Score=32.12 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=16.3
Q ss_pred HHHHHHHHhcChHHHHHHHHhH--cccCCCCcccccchhh
Q 045328 452 VSILTVVFKTDWERETFKAANL--VGKSNDDQTVKCDEEA 489 (501)
Q Consensus 452 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 489 (501)
.+.+..++|.+.+++.++..+| .++++++++++.++|+
T Consensus 24 ~iv~ieYrk~~rqrkId~li~RIreraEDSGnES~Gd~Ee 63 (81)
T PF00558_consen 24 TIVYIEYRKIKRQRKIDRLIERIRERAEDSGNESDGDEEE 63 (81)
T ss_dssp HHH------------CHHHHHHHHCTTTCCHCTTTTCCHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHcccccCCCCCCCcHHH
Confidence 3344455555555555554433 4566677888888887
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=80.29 E-value=60 Score=31.58 Aligned_cols=134 Identities=14% Similarity=-0.004 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhh
Q 045328 310 PMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELA 389 (501)
Q Consensus 310 ~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~ 389 (501)
+.++....+-.+|+.+=++|.+++.....-........+...+..++.. .++. ......+ .+...+.
T Consensus 77 Tgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~--------~~~~---si~yk~l--~~~~FV~ 143 (467)
T COG4267 77 TGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFV--------NNQY---SIVYKIL--ACALFVG 143 (467)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhh--------cCch---hHHHHHH--HHHHHHH
Confidence 3455666666667777667777777776666665555544444322111 1221 1122222 2222223
Q ss_pred cchhHHHHHHHhhcCCCcchHHHHHHHHHHHhHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHh
Q 045328 390 NCPQTTSCGILRGSARPGIGATINFYSFYLVGAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVFK 460 (501)
Q Consensus 390 ~~~~~~~~~~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~~ 460 (501)
.+..-+....+.+++|.+.....-+++ ..+.+.++..+-. .+..|.-++..++..+..++...+..|
T Consensus 144 m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 144 MSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 333444567888899999888888887 5566666665543 489999999999988877766665544
No 48
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=78.60 E-value=56 Score=32.20 Aligned_cols=23 Identities=4% Similarity=-0.014 Sum_probs=12.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Q 045328 437 VGLCYGLLGAQIACVVSILTVVF 459 (501)
Q Consensus 437 ~G~~~a~~i~~~i~~~~~~~~~~ 459 (501)
.-...+....+++..+.....+.
T Consensus 144 ~~~~a~~aaDnv~~~~~~~~l~~ 166 (378)
T PF05684_consen 144 SLFAAALAADNVVMALWFAFLLA 166 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555666666555554443
No 49
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=75.31 E-value=99 Score=31.42 Aligned_cols=50 Identities=14% Similarity=0.052 Sum_probs=33.7
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-cC--hhHHHHHHHHHHHHHHH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR-LG--SLELAGGALAIGFTNIT 69 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~-lg--~~~~~~~~~~~~l~~~~ 69 (501)
.|+-+.++.+-+.+++...........+-.. .| +...|..=+..++...+
T Consensus 11 ~~eki~Yg~gd~~~~~~~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi 63 (467)
T COG2211 11 LKEKIGYGLGDFASNFAFGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAI 63 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHH
Confidence 7788889999888888888887777777766 44 33444444444444444
No 50
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=75.00 E-value=16 Score=36.11 Aligned_cols=15 Identities=27% Similarity=0.104 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q 045328 341 IGLALLVSLFGLLGT 355 (501)
Q Consensus 341 ~~~~~~~~~~~~~~~ 355 (501)
.++.+-+.+|+.++-
T Consensus 34 s~lv~~~~lP~liF~ 48 (385)
T PF03547_consen 34 SKLVFNVFLPALIFS 48 (385)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444544333
No 51
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=65.35 E-value=39 Score=24.95 Aligned_cols=40 Identities=23% Similarity=0.255 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 045328 312 ALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFG 351 (501)
Q Consensus 312 ~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (501)
-++......+.+.+.+||++++++..+++.+++.+-.+..
T Consensus 35 i~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 35 IVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred HHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444455667788889999999999999988876554443
No 52
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=58.35 E-value=1.4e+02 Score=27.33 Aligned_cols=86 Identities=10% Similarity=-0.067 Sum_probs=54.7
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCcHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHhhcCCCc
Q 045328 328 GRPVKARLATVVAIGLALLVSLFGLLGTTLGREAWGRVFTNDVQVLELTKTVLPIIGLCELANCPQTTSCGILRGSARPG 407 (501)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~ 407 (501)
+..+.+++....+..++...++.=++..+.+++ ..++.++.|....+...++...-..+ ..++......-....+.+
T Consensus 109 ds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg~~fW~~~s~~f-~~vY~~I~~L~~~r~r~~ 185 (261)
T PF10160_consen 109 DSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGGWGFWFISSLVF-ALVYGFILILTPLRWRDR 185 (261)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCCeehHHHHHHHH-HHHHHHHHHHHhcccccc
Confidence 456677777777777777777777777777777 66677666766666666655444433 333333333366667777
Q ss_pred chHHHHHHH
Q 045328 408 IGATINFYS 416 (501)
Q Consensus 408 ~~~~~~~~~ 416 (501)
.|.+-++-.
T Consensus 186 LPar~SFY~ 194 (261)
T PF10160_consen 186 LPARPSFYR 194 (261)
T ss_pred CCCCccHHH
Confidence 776665544
No 53
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=57.70 E-value=1.6e+02 Score=27.33 Aligned_cols=33 Identities=3% Similarity=-0.018 Sum_probs=21.9
Q ss_pred HHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 045328 306 MYTLPMALSSSVSTRVGNELGAGRPVKARLATV 338 (501)
Q Consensus 306 ~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~ 338 (501)
...+...+........=+...++|.+++++...
T Consensus 109 l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 109 LTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 334445556666677777788888888866543
No 54
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=52.48 E-value=2e+02 Score=26.80 Aligned_cols=34 Identities=6% Similarity=-0.130 Sum_probs=22.8
Q ss_pred HHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 045328 306 MYTLPMALSSSVSTRVGNELGAGRPVKARLATVV 339 (501)
Q Consensus 306 ~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~ 339 (501)
...+...+.....+..-+...++|+++.++....
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 3344455666677777777888888888765443
No 55
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=49.61 E-value=16 Score=29.31 Aligned_cols=9 Identities=22% Similarity=0.947 Sum_probs=3.4
Q ss_pred hhhHHHHHH
Q 045328 438 GLCYGLLGA 446 (501)
Q Consensus 438 G~~~a~~i~ 446 (501)
|+.++..++
T Consensus 68 ~Ii~gv~aG 76 (122)
T PF01102_consen 68 GIIFGVMAG 76 (122)
T ss_dssp HHHHHHHHH
T ss_pred ehhHHHHHH
Confidence 333333333
No 56
>PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1. It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane
Probab=46.43 E-value=3.3e+02 Score=27.52 Aligned_cols=57 Identities=16% Similarity=0.100 Sum_probs=33.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045328 290 QAALATSALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTT 356 (501)
Q Consensus 290 ~~~~a~~~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (501)
-.-++.|+.......+ ...|.+++..-+.++.+.-+.....-+.++..+..+...+.
T Consensus 37 Ll~~siygl~~~~~~~----------~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~ 93 (432)
T PF06963_consen 37 LLPVSIYGLVRSLSAI----------LFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLL 93 (432)
T ss_pred cHHHHHHHHHHHHHHH----------HhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666555544 34678888887777666655555555555555544444333
No 57
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=43.46 E-value=2.7e+02 Score=25.76 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhcc
Q 045328 311 MALSSSVSTRVGNELGAGRPVKARLATVVAIGL-ALLVSLFGLLGTTLGREAWGRVF 366 (501)
Q Consensus 311 ~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~~l~ 366 (501)
..+........=++-.++|.++.++....+... .+...+|..+..++-.+.+-.+.
T Consensus 114 rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l 170 (265)
T COG3715 114 RTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLL 170 (265)
T ss_pred HHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 344444455555666778888888887777643 34444444444444444443333
No 58
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=38.41 E-value=1.9e+02 Score=25.41 Aligned_cols=32 Identities=3% Similarity=-0.056 Sum_probs=16.6
Q ss_pred HHHHHHHHhhhhhhhhccCCcH--HHHHHHHHHH
Q 045328 349 LFGLLGTTLGREAWGRVFTNDV--QVLELTKTVL 380 (501)
Q Consensus 349 ~~~~~~~~~~~~~i~~l~~~~~--~~~~~~~~~l 380 (501)
.+.+++..-++-....||.+++ +.++.+....
T Consensus 18 F~LG~lf~~~~yD~~~Lw~~~~t~~~~d~a~~hY 51 (196)
T PF08229_consen 18 FLLGVLFSNWPYDYPTLWSSPPTDEAFDNAETHY 51 (196)
T ss_pred HHHHHHHHcccchhHHhcCCCCCHHHHHHHHHHH
Confidence 3344444555556777887643 4444444333
No 59
>TIGR00881 2A0104 phosphoglycerate transporter family protein.
Probab=38.10 E-value=2.9e+02 Score=26.40 Aligned_cols=11 Identities=18% Similarity=0.175 Sum_probs=5.0
Q ss_pred HHHHHHHhhcC
Q 045328 317 VSTRVGNELGA 327 (501)
Q Consensus 317 ~~p~~s~~~g~ 327 (501)
....+++.+|+
T Consensus 49 ~~g~l~dr~g~ 59 (379)
T TIGR00881 49 VMGSVSDRSNP 59 (379)
T ss_pred hhhHHHHhhCC
Confidence 33444555543
No 60
>PF07074 TRAP-gamma: Translocon-associated protein, gamma subunit (TRAP-gamma); InterPro: IPR009779 This family consists of several eukaryotic translocon-associated protein, gamma subunit (TRAP-gamma) sequences. The translocation site (translocon), at which nascent polypeptides pass through the endoplasmic reticulum membrane, contains a component previously called 'signal sequence receptor' that is now renamed as 'translocon-associated protein' (TRAP). The TRAP complex is comprised of four membrane proteins alpha, beta, gamma and delta, which are present in a stoichiometric relation, and are genuine neighbours in intact microsomes. The gamma subunit is predicted to span the membrane four times [].; GO: 0006613 cotranslational protein targeting to membrane, 0005784 Sec61 translocon complex, 0030176 integral to endoplasmic reticulum membrane
Probab=36.88 E-value=2.3e+02 Score=24.15 Aligned_cols=39 Identities=3% Similarity=-0.103 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHH
Q 045328 421 GAPLAIVLAFVWKLGFVGLCYGLLGAQIACVVSILTVVF 459 (501)
Q Consensus 421 ~i~~~~~l~~~~~~g~~G~~~a~~i~~~i~~~~~~~~~~ 459 (501)
.....|+..-++.+++..-++-..+...+.+.+...-++
T Consensus 29 S~vPi~LF~~Ih~m~~~~~~I~f~i~t~~sayll~fAYk 67 (170)
T PF07074_consen 29 SAVPIWLFWRIHQMDLYDSLIVFVIVTLVSAYLLAFAYK 67 (170)
T ss_pred HHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHH
Confidence 334446666666778777666666665555555444443
No 61
>PRK01637 hypothetical protein; Reviewed
Probab=36.60 E-value=3.7e+02 Score=25.28 Aligned_cols=15 Identities=20% Similarity=0.235 Sum_probs=7.1
Q ss_pred HHHHHHHHHhhcCCC
Q 045328 315 SSVSTRVGNELGAGR 329 (501)
Q Consensus 315 ~~~~p~~s~~~g~~~ 329 (501)
.+..-.+.+.++.++
T Consensus 110 ~~l~~a~N~i~~~~~ 124 (286)
T PRK01637 110 SSIDKALNTIWRSKR 124 (286)
T ss_pred HHHHHHHHHHhCCCC
Confidence 334444455565443
No 62
>PRK13852 type IV secretion system protein VirB6; Provisional
Probab=36.14 E-value=3.1e+02 Score=25.93 Aligned_cols=54 Identities=17% Similarity=-0.019 Sum_probs=33.7
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 045328 300 IQTTSLMYTLPMALSSSVSTRVGNELGAGRPVKARLATVVAIGLALLVSLFGLLG 354 (501)
Q Consensus 300 ~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (501)
.++.+-+..+..+..+-.....+.++-+|+.+ .++..++.++++++.++.....
T Consensus 29 s~i~s~Isp~~~t~~TLyIil~Gy~I~rG~vd-~~efi~R~ikiaIIvalAl~ag 82 (295)
T PRK13852 29 GSIQSAVSAPLVACVTLWIIVQGILVMRGELD-ARGGITRVITVSIVVALIVGQA 82 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCch-hHHHHHHHHHHHHHHHHHHhHH
Confidence 34444444444444444455556666666655 5688888888888887766654
No 63
>KOG2533 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=35.89 E-value=5.1e+02 Score=26.72 Aligned_cols=68 Identities=9% Similarity=-0.110 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhh----cCCcchhHHHHHHHHHHHHHHHHHHH
Q 045328 153 NSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPLIIYLTFYL----SLGVPGIAISNFITNFNSLFFLLCYM 220 (501)
Q Consensus 153 ~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l~~~li~~~----~~g~~g~a~a~~i~~~~~~~~~~~~~ 220 (501)
-+...+++..++-.++.....+......+-+++...+-.... ..+..|-=|..++.-+++.....+.+
T Consensus 153 P~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f 224 (495)
T KOG2533|consen 153 PGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVF 224 (495)
T ss_pred hHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEE
Confidence 344556677777777777776666555555555544332211 14555655666666666655554443
No 64
>PF04791 LMBR1: LMBR1-like membrane protein; InterPro: IPR006876 This group of uncharacterised proteins have a conserved C-terminal region which is found in LMBR1 and in the lipocalin-1 receptor. LMBR1 was thought to play a role in preaxial polydactyly, but recent evidence now suggests this not to be the case [].
Probab=33.58 E-value=3e+02 Score=28.08 Aligned_cols=51 Identities=12% Similarity=0.016 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCChHH----HHHHHHHHHHHHHHH
Q 045328 297 ALVIQTTSLMYTLPMALSSSVSTRVGNELGAGRPVK----ARLATVVAIGLALLV 347 (501)
Q Consensus 297 ~~~~~i~~~~~~~~~~~~~~~~p~~s~~~g~~~~~~----~~~~~~~~~~~~~~~ 347 (501)
.....++.+.+.....++-...|..-..+.+||.+. .++..+..+.+..+.
T Consensus 75 ~~~~~~W~~iyw~~~il~w~ilPf~~~y~es~~~~~~~k~l~~~l~~n~~~~~~~ 129 (471)
T PF04791_consen 75 SLMEVLWYIIYWLTFILTWLILPFAQFYYESGDFTPKGKGLKSSLKENLIYYLIF 129 (471)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHHHHHHHHHHHH
Confidence 344456777777777888889999998888888764 444455554444433
No 65
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=31.15 E-value=4.9e+02 Score=25.11 Aligned_cols=193 Identities=12% Similarity=0.053 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhCCCChhHHHHHHHHHHH
Q 045328 27 GFPIAAMSLVNYLKNMVLVVCMGRLGSLELAGGALAIGFTNITGYSVLSGLAMGMEPLCGQGFGSRNLSLVSLTLQRTIL 106 (501)
Q Consensus 27 ~~p~~~~~~~~~~~~~v~~~~l~~lg~~~~~~~~~~~~l~~~~~~~~~~gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~ 106 (501)
..-.....+++.+.......+.-...+.++....+..++.-..+..+..|. .++.+.+. .+.+|...+.+...+.
T Consensus 143 lv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~---lTR~i~~k--~kg~~~~~~~f~p~is 217 (342)
T COG0798 143 LVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGV---LTRYILIK--KKGREWYESRFLPKIS 217 (342)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--hccchHHHHHHHhhcC
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 045328 107 MLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSFLHPLRIYLRSKGTTWPLMWSTLISIAFHFPL 186 (501)
Q Consensus 107 ~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~i~~i~l 186 (501)
--...++..+++..|...-=....++.++.-.+..++............. +..+.-.-+-..+...+..++-..+..
T Consensus 218 pi~ligLl~TivliF~~qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i---~k~lgl~y~~~~~~~ft~aSNnfeLAi 294 (342)
T COG0798 218 PIALIGLLLTIVLIFAFQGEQIVEQPLDILLIAIPLLIYFLLMFFISYFI---AKALGLPYEDAAALVFTGASNNFELAI 294 (342)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHH---HHHhCCChhhhhceeeeeccccHHHHH
Q ss_pred HHHHHHhhcCC-cchhHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 045328 187 IIYLTFYLSLG-VPGIAISNFITNFNSLFFLLCYMFVTRASDEPL 230 (501)
Q Consensus 187 ~~~li~~~~~g-~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~ 230 (501)
...... +| -.|++++++++-++...++..+.+--.+.++.+
T Consensus 295 AvAi~l---fG~~s~aA~a~vigpLvEVpvml~lV~v~~~~~~~~ 336 (342)
T COG0798 295 AVAIAL---FGLTSGAALATVVGPLVEVPVMLGLVKVALRIRKKY 336 (342)
T ss_pred HHHHHh---cCccccchhhhhccchhhHHHHHHHHHHHHHHhHhh
No 66
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=29.45 E-value=21 Score=27.70 Aligned_cols=31 Identities=6% Similarity=-0.063 Sum_probs=21.7
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHHHHHhcC
Q 045328 432 WKLGFVGLCYGLLGAQIACVVSILTVVFKTD 462 (501)
Q Consensus 432 ~~~g~~G~~~a~~i~~~i~~~~~~~~~~~~~ 462 (501)
+.|--.|+.++..+..++..++..-+++...
T Consensus 47 h~WRN~GIli~f~i~f~~~~~~~~e~~~~~~ 77 (103)
T PF06422_consen 47 HRWRNFGILIAFWIFFIVLTLLATEFIKFEK 77 (103)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 3456778888888887777777766665443
No 67
>KOG4694 consensus Predicted membrane protein [Function unknown]
Probab=29.38 E-value=3e+02 Score=22.85 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=12.5
Q ss_pred HHHhHHHHHHHHHHhcccchhhhHHHHH
Q 045328 418 YLVGAPLAIVLAFVWKLGFVGLCYGLLG 445 (501)
Q Consensus 418 ~i~~i~~~~~l~~~~~~g~~G~~~a~~i 445 (501)
.++.+|+..++... -+....++=.++
T Consensus 94 ~~iqlPl~vFL~~n--~~~~nLpLe~~~ 119 (174)
T KOG4694|consen 94 PCIQLPLMVFLRLN--AAGRNLPLEIIT 119 (174)
T ss_pred HHHHHHHHHHHHHc--cccccCcHHHHH
Confidence 44566666655432 244444444333
No 68
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=28.07 E-value=1.2e+02 Score=23.30 Aligned_cols=14 Identities=7% Similarity=-0.045 Sum_probs=6.6
Q ss_pred HHHHhcChHHHHHH
Q 045328 456 TVVFKTDWERETFK 469 (501)
Q Consensus 456 ~~~~~~~~~~~~~~ 469 (501)
+..++..|.+.+..
T Consensus 36 laaKC~~~~k~~~S 49 (102)
T PF15176_consen 36 LAAKCPVWYKYLAS 49 (102)
T ss_pred HHHHhHHHHHHHhc
Confidence 33444455555443
No 69
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=26.92 E-value=50 Score=22.23 Aligned_cols=16 Identities=13% Similarity=0.077 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045328 443 LLGAQIACVVSILTVV 458 (501)
Q Consensus 443 ~~i~~~i~~~~~~~~~ 458 (501)
.+++.+++.+..+-+-
T Consensus 11 iVlgvIigNia~LK~s 26 (55)
T PF11446_consen 11 IVLGVIIGNIAALKYS 26 (55)
T ss_pred HHHHHHHhHHHHHHHh
Confidence 3444444444444433
No 70
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=25.48 E-value=5e+02 Score=23.35 Aligned_cols=38 Identities=18% Similarity=0.106 Sum_probs=20.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcC
Q 045328 93 NLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLH 130 (501)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~ 130 (501)
+++...+.+..++...+.+-+++++++.+..|+..+++
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~ 179 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLH 179 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 34444445555555444444444555666667777665
No 71
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=25.19 E-value=35 Score=29.44 Aligned_cols=40 Identities=18% Similarity=0.163 Sum_probs=27.6
Q ss_pred cchhhhHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHc
Q 045328 435 GFVGLCYGLLGAQIACVVSILTVVFKTDWERETFKAANLV 474 (501)
Q Consensus 435 g~~G~~~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (501)
|..+..++..+-.++.+++.++.+++..|++......+|.
T Consensus 12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~ 51 (175)
T PRK14472 12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEERE 51 (175)
T ss_pred CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 5566666777777777777777777777777666555444
No 72
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=24.37 E-value=3.8e+02 Score=23.69 Aligned_cols=31 Identities=19% Similarity=0.358 Sum_probs=19.0
Q ss_pred HHhhcCCCcchHHHHHHHHHHHhHHHHHHHHH
Q 045328 399 ILRGSARPGIGATINFYSFYLVGAPLAIVLAF 430 (501)
Q Consensus 399 ~l~~~g~~~~~~~~~~~~~~i~~i~~~~~l~~ 430 (501)
...+.|--..+-.....+ |++.+.+.-++.+
T Consensus 24 livgtgalalpkafatag-wllsi~ll~fl~f 54 (319)
T KOG3832|consen 24 LIVGTGALALPKAFATAG-WLLSITLLTFLAF 54 (319)
T ss_pred hhhccccccchHhHhhcc-HHHHHHHHHHHHH
Confidence 444566666666666665 8777766555543
No 73
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=24.00 E-value=42 Score=27.79 Aligned_cols=35 Identities=9% Similarity=-0.081 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHcc
Q 045328 441 YGLLGAQIACVVSILTVVFKTDWERETFKAANLVG 475 (501)
Q Consensus 441 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (501)
+.+.+.+++.+++.++++++..|++......+|.+
T Consensus 7 ~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~ 41 (141)
T PRK08476 7 PYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNA 41 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777888888877778777665555543
No 74
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=23.82 E-value=4.2e+02 Score=21.88 Aligned_cols=105 Identities=18% Similarity=0.119 Sum_probs=51.2
Q ss_pred HHHhhHHHHHHhhhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhhHHHHHH
Q 045328 76 GLAMGMEPLCGQGFGSRNLSLVSLTLQRTILMLLIASIPIALLWFKLEPLMLSLHQTPDIARVAGVYCRYAIPDLVANSF 155 (501)
Q Consensus 76 gl~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 155 (501)
++.--..-.+++.+|+ +++++....++...+++.+...+...+.++- .. +++....-....|+...+.....+
T Consensus 8 p~~fl~~Dii~E~yG~---~~a~~~i~~g~~~~~~~~~~~~~~~~lp~~~-~~---~~~~~~vf~~~~ri~~aS~~a~li 80 (145)
T PF02592_consen 8 PLTFLITDIISEVYGK---KAARKAIWIGFLANLLFSLLIWIVILLPPAP-FW---QEAFESVFGPTPRIALASLIAFLI 80 (145)
T ss_pred HHHHHHHHHHHHHhCH---HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh-hh---HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3344566677888774 5666677766666666544443332221111 11 222223333445566666665555
Q ss_pred HHHHHHHHHh----cCCCcHHHHHHHHHHHHHHHHH
Q 045328 156 LHPLRIYLRS----KGTTWPLMWSTLISIAFHFPLI 187 (501)
Q Consensus 156 ~~~~~~~l~~----~~~~~~~~~~~i~~~i~~i~l~ 187 (501)
++........ .-+.|..-..+..+..+.-.++
T Consensus 81 sq~~d~~if~~lk~~~~~r~lw~R~~~St~isq~iD 116 (145)
T PF02592_consen 81 SQLLDVYIFSKLKRKTKGRSLWLRNNGSTAISQLID 116 (145)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHH
Confidence 5555433332 2222344555555554444444
No 75
>COG3462 Predicted membrane protein [Function unknown]
Probab=23.77 E-value=86 Score=24.27 Aligned_cols=22 Identities=5% Similarity=0.031 Sum_probs=10.6
Q ss_pred chhhhHHHHHHHHHHHHHHHHH
Q 045328 436 FVGLCYGLLGAQIACVVSILTV 457 (501)
Q Consensus 436 ~~G~~~a~~i~~~i~~~~~~~~ 457 (501)
..|.|+-+.+-.++..++...+
T Consensus 46 ~yGm~lImpI~~~vvli~lvvf 67 (117)
T COG3462 46 LYGMWLIMPIFWAVVLIFLVVF 67 (117)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH
Confidence 3455555555555544444433
No 76
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=23.13 E-value=71 Score=26.92 Aligned_cols=33 Identities=3% Similarity=-0.148 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHc
Q 045328 442 GLLGAQIACVVSILTVVFKTDWERETFKAANLV 474 (501)
Q Consensus 442 a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (501)
++.+.+++.+++.++++++..|++......+|.
T Consensus 23 ~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~ 55 (156)
T CHL00118 23 ATLPLMALQFLLLMVLLNIILYKPLLKVLDERK 55 (156)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777777776655544443
No 77
>PRK03612 spermidine synthase; Provisional
Probab=22.67 E-value=8.8e+02 Score=25.19 Aligned_cols=30 Identities=10% Similarity=0.071 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cChhHHH
Q 045328 28 FPIAAMSLVNYLKNMVLVVCMGR-LGSLELA 57 (501)
Q Consensus 28 ~p~~~~~~~~~~~~~v~~~~l~~-lg~~~~~ 57 (501)
.-.+++.+....+..+-.-+++. +|...++
T Consensus 21 ~~~f~sg~~~L~yEv~~~r~l~~~~G~s~~~ 51 (521)
T PRK03612 21 AAVFVCAACGLVYELLLGTLASYLLGDSVTQ 51 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCchHHH
Confidence 34456666666666666666666 5655443
No 78
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=22.44 E-value=3.5e+02 Score=20.49 Aligned_cols=52 Identities=12% Similarity=0.048 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc-CCcchhHHHHHHHHHHHHHHHHHHHHhcc
Q 045328 173 MWSTLISIAFHFPLIIYLTFYLS-LGVPGIAISNFITNFNSLFFLLCYMFVTR 224 (501)
Q Consensus 173 ~~~~i~~~i~~i~l~~~li~~~~-~g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 224 (501)
-++..++.++.+++..+..+..+ ..+...+|+-.++-+....+.-.+.+|.+
T Consensus 34 K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~~ 86 (93)
T PF06946_consen 34 KWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRSK 86 (93)
T ss_pred chhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhhh
Confidence 34455555566666555444332 34555555555555555555555554443
No 79
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=21.87 E-value=72 Score=27.28 Aligned_cols=33 Identities=0% Similarity=-0.188 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHc
Q 045328 442 GLLGAQIACVVSILTVVFKTDWERETFKAANLV 474 (501)
Q Consensus 442 a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (501)
...+.+++.+++.++.+++-.|++......+|.
T Consensus 23 ~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~ 55 (167)
T PRK08475 23 YDIIERTINFLIFVGILWYFAAKPLKNFYKSRI 55 (167)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556777777777777777776665554443
No 80
>KOG1607 consensus Protein transporter of the TRAM (translocating chain-associating membrane) superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=21.50 E-value=7.2e+02 Score=23.79 Aligned_cols=16 Identities=13% Similarity=0.110 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045328 370 VQVLELTKTVLPIIGL 385 (501)
Q Consensus 370 ~~~~~~~~~~l~i~~~ 385 (501)
.|..-+......-.-.
T Consensus 198 SD~~Le~~K~~nY~~~ 213 (318)
T KOG1607|consen 198 SDVFLELGKMLNYLQF 213 (318)
T ss_pred hHHHHHHHHHHchhhH
Confidence 3444444444444433
No 81
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=21.43 E-value=2.7e+02 Score=19.17 Aligned_cols=8 Identities=0% Similarity=0.248 Sum_probs=2.9
Q ss_pred HHHhcChH
Q 045328 457 VVFKTDWE 464 (501)
Q Consensus 457 ~~~~~~~~ 464 (501)
+..+...|
T Consensus 28 ~ayr~~~K 35 (60)
T COG4736 28 FAYRPGKK 35 (60)
T ss_pred HHhcccch
Confidence 33333333
No 82
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.42 E-value=58 Score=28.41 Aligned_cols=36 Identities=8% Similarity=0.002 Sum_probs=19.6
Q ss_pred HHHHHHHHHhhhhhhhhccCCcH--HHHHHHHHHHHHH
Q 045328 348 SLFGLLGTTLGREAWGRVFTNDV--QVLELTKTVLPII 383 (501)
Q Consensus 348 ~~~~~~~~~~~~~~i~~l~~~~~--~~~~~~~~~l~i~ 383 (501)
+....++...++-....+|+.++ +.++.+......+
T Consensus 17 sF~lGvlf~~~pyD~~~Lw~~~~t~~~~d~~~~hy~~l 54 (196)
T smart00786 17 SFFLGILFANFPYDYPLLWSPDPTPSAFDAALRHYQFL 54 (196)
T ss_pred HHHHHHHHhcCccccchhcCCCCCHHHHHHHHHHHHHH
Confidence 33444555555666778887653 4445444444433
No 83
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=21.00 E-value=48 Score=28.54 Aligned_cols=34 Identities=12% Similarity=0.179 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHc
Q 045328 441 YGLLGAQIACVVSILTVVFKTDWERETFKAANLV 474 (501)
Q Consensus 441 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 474 (501)
|.+.+..++.+++.++.+++-.|++......+|.
T Consensus 18 ~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 18 WGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777776655554444
No 84
>PRK10263 DNA translocase FtsK; Provisional
Probab=20.38 E-value=1.3e+03 Score=27.06 Aligned_cols=19 Identities=26% Similarity=0.092 Sum_probs=9.7
Q ss_pred ccchhhhHHHHHHHHHHHH
Q 045328 434 LGFVGLCYGLLGAQIACVV 452 (501)
Q Consensus 434 ~g~~G~~~a~~i~~~i~~~ 452 (501)
+|..|..+..++..++..+
T Consensus 158 fG~vGa~LILLlllLIGLi 176 (1355)
T PRK10263 158 LHSSGGTIALLCVWAAGLT 176 (1355)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 3666655555554444333
No 85
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=20.14 E-value=7.9e+02 Score=25.52 Aligned_cols=18 Identities=17% Similarity=0.052 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045328 176 TLISIAFHFPLIIYLTFY 193 (501)
Q Consensus 176 ~i~~~i~~i~l~~~li~~ 193 (501)
.++..+.-+++..+.+.+
T Consensus 193 KV~~ii~Fii~gii~~~G 210 (541)
T COG0833 193 KVLTIIGFIILGIIIICG 210 (541)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 444444455555555543
No 86
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=20.00 E-value=53 Score=27.93 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhHcc
Q 045328 441 YGLLGAQIACVVSILTVVFKTDWERETFKAANLVG 475 (501)
Q Consensus 441 ~a~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (501)
+.+.+.+++.+++.++++++..|++......+|.+
T Consensus 8 ~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~ 42 (164)
T PRK14473 8 LGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTR 42 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777776665555543
Done!