Query 045328
Match_columns 501
No_of_seqs 264 out of 1943
Neff 10.2
Searched_HMMs 13730
Date Mon Mar 25 21:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045328.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045328hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 63.1 16 0.0012 32.5 9.9 14 313-326 74-87 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 29.2 1.6E+02 0.012 25.0 32.5 26 433-458 406-431 (447)
3 d1pv7a_ f.38.1.2 (A:) Lactose 7.9 5E+02 0.036 20.8 36.3 48 20-67 6-56 (417)
4 d3dtub2 f.17.2.1 (B:30-129) Ba 6.9 3.3E+02 0.024 17.8 9.5 25 251-275 66-90 (100)
5 d2oara1 f.16.1.1 (A:10-118) Ga 6.0 2.3E+02 0.017 19.3 3.4 15 438-452 61-75 (109)
6 d1vpua_ g.34.1.1 (A:) HIV-1 VP 5.1 72 0.0052 17.9 0.1 16 475-490 13-28 (45)
7 d3ehbb2 f.17.2.1 (B:1-107) Bac 5.1 4.5E+02 0.033 17.4 9.2 26 251-276 72-97 (107)
8 d2r6gg1 f.58.1.1 (G:7-296) Mal 3.8 8.6E+02 0.062 18.9 9.2 48 321-369 185-233 (290)
9 d2yvxa3 f.57.1.1 (A:276-448) M 3.7 7.5E+02 0.055 18.0 6.1 30 89-118 69-98 (173)
10 d2fyuk1 f.23.15.1 (K:1-53) Sub 3.4 4.4E+02 0.032 15.2 2.7 26 85-110 2-27 (53)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=63.05 E-value=16 Score=32.45 Aligned_cols=14 Identities=14% Similarity=0.159 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhhc
Q 045328 313 LSSSVSTRVGNELG 326 (501)
Q Consensus 313 ~~~~~~p~~s~~~g 326 (501)
++....-.+++.+|
T Consensus 74 ~~~~~~G~l~Dr~g 87 (447)
T d1pw4a_ 74 FSKFIMGSVSDRSN 87 (447)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcC
Confidence 33333344444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=29.22 E-value=1.6e+02 Score=25.05 Aligned_cols=26 Identities=23% Similarity=0.451 Sum_probs=14.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHH
Q 045328 433 KLGFVGLCYGLLGAQIACVVSILTVV 458 (501)
Q Consensus 433 ~~g~~G~~~a~~i~~~i~~~~~~~~~ 458 (501)
..|..+..+......++..++.....
T Consensus 406 ~~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 406 FFGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666655555555555444443
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=7.94 E-value=5e+02 Score=20.82 Aligned_cols=48 Identities=6% Similarity=-0.112 Sum_probs=26.3
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHH
Q 045328 20 LKRMTDIGFPIAAMSLVNYLKNMVLVVCMGR---LGSLELAGGALAIGFTN 67 (501)
Q Consensus 20 ~k~i~~~~~p~~~~~~~~~~~~~v~~~~l~~---lg~~~~~~~~~~~~l~~ 67 (501)
-|+.+.++.-.+...+...........++.+ +++.++|.......+..
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~ 56 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFS 56 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3556777777777666666555444444443 34556655443333333
No 4
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=6.90 E-value=3.3e+02 Score=17.85 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=17.1
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHH
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWW 275 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~ 275 (501)
+....-|+.-..+|..+-.....-+
T Consensus 66 ~~n~~LEiiWTviP~lILi~l~~pS 90 (100)
T d3dtub2 66 THNSPLEIAWTIVPIVILVAIGAFS 90 (100)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcchHHHHHHHHHHHHHHHHHHHH
Confidence 4455688999999987765554333
No 5
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=5.95 E-value=2.3e+02 Score=19.31 Aligned_cols=15 Identities=0% Similarity=-0.214 Sum_probs=6.7
Q ss_pred hhhHHHHHHHHHHHH
Q 045328 438 GLCYGLLGAQIACVV 452 (501)
Q Consensus 438 G~~~a~~i~~~i~~~ 452 (501)
|.++...+..++.++
T Consensus 61 G~fi~a~InFlIiA~ 75 (109)
T d2oara1 61 NVLLSAAINFFLIAF 75 (109)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444444
No 6
>d1vpua_ g.34.1.1 (A:) HIV-1 VPU cytoplasmic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=5.08 E-value=72 Score=17.91 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=9.6
Q ss_pred ccCCCCcccccchhhh
Q 045328 475 GKSNDDQTVKCDEEAL 490 (501)
Q Consensus 475 ~~~~~~~~~~~~~~~~ 490 (501)
+.+++.++.+.++|+.
T Consensus 13 RAEDSGNESeGD~eEL 28 (45)
T d1vpua_ 13 RAEDSGNESEGDQEEL 28 (45)
T ss_dssp TTCHHHHTTTTHHHHT
T ss_pred HcccCCCCCcccHHHH
Confidence 3345566777776664
No 7
>d3ehbb2 f.17.2.1 (B:1-107) Bacterial aa3 type cytochrome c oxidase subunit II {Paracoccus denitrificans [TaxId: 266]}
Probab=5.05 E-value=4.5e+02 Score=17.42 Aligned_cols=26 Identities=12% Similarity=0.002 Sum_probs=17.9
Q ss_pred chhhHHHHHHHHhhhHHHHHHHHHHH
Q 045328 251 LGHEWGILIRLAIPSCMAVCLEWWWY 276 (501)
Q Consensus 251 ~~~~~~~~~~~~~p~~~~~~~~~~~~ 276 (501)
+....-|+.-.-+|..+-..+..-+.
T Consensus 72 ~~n~~lEi~WTviP~lIL~~laipSl 97 (107)
T d3ehbb2 72 THNTPIEVIWTLVPVLILVAIGAFSL 97 (107)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567889999999877665544443
No 8
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=3.76 E-value=8.6e+02 Score=18.88 Aligned_cols=48 Identities=17% Similarity=-0.024 Sum_probs=29.0
Q ss_pred HHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhhccCCc
Q 045328 321 VGNELGAGRPVKARLATVVAIGLALLVSLFGLLGTTLGREA-WGRVFTND 369 (501)
Q Consensus 321 ~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~ 369 (501)
.++..|+++.+..++.....++=++..+..... +..+.+. ...++.++
T Consensus 185 AA~~~GAs~~~~f~~I~lPl~~p~i~~~~il~f-i~~~~~f~~~~~~~~~ 233 (290)
T d2r6gg1 185 AAALDGATPWQAFRLVLLPLSVPILAVVFILSF-IAAITEVPVASLLLRD 233 (290)
T ss_dssp HHHHTTCCHHHHHHHTTHHHHHHHHHHHHHHHH-HHHHTCCHHHHHHCCS
T ss_pred hHhhcCCCHHHHHHHHHHHhhhhhhhhHHHHHh-hhhccccccceeccCC
Confidence 466778888888888888877776666555433 3333443 33344443
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.65 E-value=7.5e+02 Score=18.02 Aligned_cols=30 Identities=10% Similarity=0.104 Sum_probs=19.4
Q ss_pred hCCCChhHHHHHHHHHHHHHHHHHHHHHHH
Q 045328 89 FGSRNLSLVSLTLQRTILMLLIASIPIALL 118 (501)
Q Consensus 89 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~il 118 (501)
.|+-+.++.++.+.+-+...++.+..+.++
T Consensus 69 ~g~i~~~~~~~~l~kE~~vgll~G~~l~~i 98 (173)
T d2yvxa3 69 TRDLDLRDWRRVFLKEMGVGLLLGLTLSFL 98 (173)
T ss_dssp TTCSCSSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667777777777777777666543
No 10
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.40 E-value=4.4e+02 Score=15.17 Aligned_cols=26 Identities=15% Similarity=0.029 Sum_probs=15.9
Q ss_pred HHhhhCCCChhHHHHHHHHHHHHHHH
Q 045328 85 CGQGFGSRNLSLVSLTLQRTILMLLI 110 (501)
Q Consensus 85 is~~~g~~~~~~~~~~~~~~~~~~~~ 110 (501)
+++.+|++..+.++....+...+...
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a 27 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAV 27 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhh
Confidence 45667766666666666665555443
Done!