BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045329
(404 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QIA|A Chain A, Crystal Structure Of P-Loop G237a Mutant Of Subunit A Of
The A1ao Atp Synthase
Length = 588
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 145 PTGMLGEFKDSMRYALLVRQSFLDIRD------NFRRIVDPSLQSTNGPKIRKQIVLDGP 198
P+G + E K R+ + V++ + + +R++D G + GP
Sbjct: 180 PSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKG----GTAAIPGP 235
Query: 199 LCCGKSITLAMLVHWAREEGWLVLYV---PRGREWTHGGYFY---KNPQTGLWDTPLQAE 252
GK++T L W+ + +V+Y+ RG E T + K+P+TG PL
Sbjct: 236 FASGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG---KPLMER 290
Query: 253 NVL 255
VL
Sbjct: 291 TVL 293
>pdb|1IAU|A Chain A, Human Granzyme B In Complex With Ac-Iepd-Cho
Length = 227
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 180 SLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHGGYFYKN 239
SL+ G IR VL C G SI + + H +E+ ++P R H Y KN
Sbjct: 25 SLKRCGGFLIRDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
>pdb|3TJU|A Chain A, Crystal Structure Of Human Granzyme H With An Inhibitor
pdb|3TJV|A Chain A, Crystal Structure Of Human Granzyme H With A Peptidyl
Substrate
pdb|3TK9|A Chain A, Crystal Structure Of Human Granzyme H
Length = 226
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 178 DPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHGGYFY 237
+ S + G +RK VL C G SI + + H +E+ ++P R H Y
Sbjct: 23 EKSRKRCGGILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNP 82
Query: 238 KN 239
KN
Sbjct: 83 KN 84
>pdb|4GAW|A Chain A, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|B Chain B, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|C Chain C, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|D Chain D, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|E Chain E, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|F Chain F, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|G Chain G, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|H Chain H, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|I Chain I, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|J Chain J, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|K Chain K, Crystal Structure Of Active Human Granzyme H
pdb|4GAW|L Chain L, Crystal Structure Of Active Human Granzyme H
Length = 226
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 27/62 (43%)
Query: 178 DPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHGGYFY 237
+ S + G +RK VL C G SI + + H +E+ ++P R H Y
Sbjct: 23 EKSRKRCGGILVRKDFVLTAAHCQGSSINVTLGAHNIKEQERTQQFIPVKRPIPHPAYNP 82
Query: 238 KN 239
KN
Sbjct: 83 KN 84
>pdb|3IKJ|A Chain A, Structural Characterization For The Nucleotide Binding
Ability Of Subunit A Mutant S238a Of The A1ao Atp
Synthase
Length = 588
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Query: 145 PTGMLGEFKDSMRYALLVRQSFLDIRD------NFRRIVDPSLQSTNGPKIRKQIVLDGP 198
P+G + E K R+ + V++ + + +R++D G + GP
Sbjct: 180 PSGEIKELKMYQRWPVRVKRPYKEKLPPEVPLITGQRVIDTFFPQAKG----GTAAIPGP 235
Query: 199 LCCGKSITLAMLVHWAREEGWLVLYV---PRGREWTHGGYFY---KNPQTGLWDTPLQAE 252
GK++T L W+ + +V+Y+ RG E T + K+P+TG PL
Sbjct: 236 FGAGKTVTQHQLAKWS--DAQVVIYIGCGERGNEMTDVLEEFPKLKDPKTG---KPLMER 290
Query: 253 NVL 255
VL
Sbjct: 291 TVL 293
>pdb|1FQ3|A Chain A, Crystal Structure Of Human Granzyme B
pdb|1FQ3|B Chain B, Crystal Structure Of Human Granzyme B
Length = 227
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%)
Query: 180 SLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHGGYFYKN 239
SL+ G I+ VL C G SI + + H +E+ ++P R H Y KN
Sbjct: 25 SLKRCGGFLIQDDFVLTAAHCWGSSINVTLGAHNIKEQEPTQQFIPVKRPIPHPAYNPKN 84
>pdb|2J1Q|A Chain A, Crystal Structure Of Trypanosoma Cruzi Arginine Kinase
Length = 357
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%)
Query: 288 LKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDI--PVLIAIDQYNNW 345
LKG K+ G+TL D++Q G+ + + +GV + +L + P+ I+ Y+
Sbjct: 39 LKG---KQTKMGATLMDVIQSGVENLDSGIGVYAPDAESYTLFAALLDPI---IEDYHKG 92
Query: 346 FTFSEYEEP 354
F S+ + P
Sbjct: 93 FKPSDKQPP 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,771,851
Number of Sequences: 62578
Number of extensions: 391100
Number of successful extensions: 791
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 786
Number of HSP's gapped (non-prelim): 9
length of query: 404
length of database: 14,973,337
effective HSP length: 101
effective length of query: 303
effective length of database: 8,652,959
effective search space: 2621846577
effective search space used: 2621846577
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)