BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045329
(404 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P51398|RT29_HUMAN 28S ribosomal protein S29, mitochondrial OS=Homo sapiens GN=DAP3
PE=1 SV=1
Length = 398
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 71/284 (25%), Positives = 126/284 (44%), Gaps = 39/284 (13%)
Query: 128 YFKFSEDELNAMLPEGLPTGMLGEFKDSMRYALLVRQSFLDIRDNFRRIVDPSLQSTNGP 187
++ S +L + P GLP + + K L+VR+ L++ + S P
Sbjct: 67 HYNISPQDLETVFPHGLPPRFVMQVKTFSEACLMVRKPALELLHYLKNT------SFAYP 120
Query: 188 KIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHG--GYFYKNPQTGLW 245
IR +L G GK+++L ++H+ ++ WL+L++P W + +
Sbjct: 121 AIR--YLLYGEKGTGKTLSLCHVIHFCAKQDWLILHIPDAHLWVKNCRDLLQSSYNKQRF 178
Query: 246 DTPLQAENVLKDFIKYNESHLRELPCQILDPIPLGEGAGVGLLKGVDSKEIS--EGSTLF 303
D PL+A LK+F NE L ++ Q K V +K S +GS L
Sbjct: 179 DQPLEASTWLKNFKTTNERFLNQIKVQ---------------EKYVWNKRESTEKGSPLG 223
Query: 304 DLVQMGINQMHA---SVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTIRST 360
++V+ GI ++ +VG+V++ K S + +L+A+D N + + +
Sbjct: 224 EVVEQGITRVRNATDAVGIVLKELKRQSSLGMFHLLVAVDGINALWGRTTLKR----EDK 279
Query: 361 RPVHARELAMVNAFRSMMHNDMMVGAFSHSTAVGSFARTCHMFQ 404
P+ ELA+V+ R MM ND GA V + ++T +F+
Sbjct: 280 SPIAPEELALVHNLRKMMKNDWHGGAI-----VSALSQTGSLFK 318
>sp|P82922|RT29_BOVIN 28S ribosomal protein S29, mitochondrial OS=Bos taurus GN=DAP3 PE=1
SV=3
Length = 397
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 117/267 (43%), Gaps = 34/267 (12%)
Query: 128 YFKFSEDELNAMLPEGLPTGMLGEFKDSMRYALLVRQSFLDIRDNFRRIVDPSLQSTNGP 187
++ S EL + P GLP + + K L+VR+ L++ L++TN
Sbjct: 66 HYNISIQELKTVFPHGLPPRFVMQVKTFNEACLMVRKPALELLH--------YLKNTNFA 117
Query: 188 KIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHG--GYFYKNPQTGLW 245
+ VL G GK+++L ++H+ ++ WL+L++P W +
Sbjct: 118 HPAVRYVLYGEKGTGKTLSLCHIIHFCAKQDWLILHIPDAHLWVKNCRDLLQSTYNKQRF 177
Query: 246 DTPLQAENVLKDFIKYNESHLRELPCQILDPIPLGEGAGVGLLKGVDSKEIS--EGSTLF 303
D PL+A LK+F NE L ++ Q K V +K S +GS L
Sbjct: 178 DQPLEASIWLKNFKTANERFLSQIKVQD---------------KYVWNKRESTEKGSPLA 222
Query: 304 DLVQMGINQMHA---SVGVVVRLRKELSLVKDIPVLIAIDQYNNWFTFSEYEEPVTIRST 360
++V+ GI ++ +VG+V++ K S + +L+A+D N + + +
Sbjct: 223 EVVEQGIMRVRNATDAVGIVLKELKRQSSLGVFRLLVAVDGVNALWGRTTLKR----EDK 278
Query: 361 RPVHARELAMVNAFRSMMHNDMMVGAF 387
P+ ELA++ R M+ ND GA
Sbjct: 279 SPITPEELALIYNLRKMVKNDWQGGAI 305
>sp|Q9ER88|RT29_MOUSE 28S ribosomal protein S29, mitochondrial OS=Mus musculus GN=Dap3
PE=2 SV=1
Length = 391
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 71/285 (24%), Positives = 124/285 (43%), Gaps = 41/285 (14%)
Query: 128 YFKFSEDELNAMLPEGLPTGMLGEFKDSMRYALLVRQSFLDIRDNFRRIVDPSLQSTNGP 187
++ +L + P GLP + + K L+VR+ L++ L++TN
Sbjct: 60 HYSIPLQDLKTVFPHGLPPRYMMQVKTFGEACLMVRKPALELLG--------YLKNTNFA 111
Query: 188 KIRKQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTHGG--YFYKNPQTGLW 245
+ +L G GK+++L VH+ WL+L++P W +
Sbjct: 112 HPAVRYLLYGEKGTGKTLSLCHAVHFCARHDWLILHIPDAHLWVKNCRELLQSTHNKQRF 171
Query: 246 DTPLQAENVLKDFIKYNESHLRELPCQILDPIPLGEGAGVGLLKGVDSKEIS--EGSTLF 303
D PL+A LK+F NE L ++ Q K V +K S +GS L
Sbjct: 172 DQPLEASTWLKNFKTTNERFLSQIKVQE---------------KYVWNKRESTEKGSPLG 216
Query: 304 DLVQMGINQMHA---SVGVVVRLRKELSLVKDIPVLIAIDQYNN-WFTFSEYEEPVTIRS 359
++V+ G+ ++ +VGVV++ K S + +L+A+D N W + +E T+
Sbjct: 217 EVVEQGLTRVRNATDAVGVVLKELKAQSALGLFHLLVAVDGVNALWGRTTLKKEDRTL-- 274
Query: 360 TRPVHARELAMVNAFRSMMHNDMMVGAFSHSTAVGSFARTCHMFQ 404
+ EL++V+ R M+ ND GA V S ++T +F+
Sbjct: 275 ---IAPEELSLVHNLRKMVKNDWHGGAI-----VLSLSQTGSLFK 311
>sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1
SV=2
Length = 514
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
Query: 50 DDNKKSSKSKSKSSDAN--SLSAPAAAQADSADDLESVRARARRLAEDDRNPSLD--VGP 105
+D+ ++S + DAN L+ AA +D A+ L +V+ +AR++ DRNP +D +G
Sbjct: 49 EDDSETSTTPPGPFDANLLRLTVAAAQSSDPAEQLTAVQ-QARKMLSTDRNPPIDDLIGS 107
Query: 106 NHRPLFTKTTS 116
P+ + S
Sbjct: 108 GILPVLVQCLS 118
>sp|Q95PM9|KARG_PLOIN Arginine kinase OS=Plodia interpunctella GN=ARGK PE=1 SV=1
Length = 355
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 287 LLKGVDSKEISEGSTLFDLVQMGINQMHASVGVVVRLRKELSLVKDI--PVLIAIDQYNN 344
+ + +K+ S GSTL D +Q G+ +H+ VG+ + + D+ P+ I+ Y+N
Sbjct: 34 VFDALKNKKTSFGSTLLDSIQSGVENLHSGVGIYAPDAEAYVVFADLFDPI---IEDYHN 90
Query: 345 WFTFSEYEEP 354
F ++ P
Sbjct: 91 GFKKTDKHPP 100
>sp|Q8L7S3|C3H24_ARATH Zinc finger CCCH domain-containing protein 24 OS=Arabidopsis
thaliana GN=At2g28450 PE=2 SV=1
Length = 809
Score = 32.3 bits (72), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 18/107 (16%)
Query: 24 LTSTSILIHQFFYSTKTQTKSSKKKQDDNKKSSKSKSKSSDANSLSAPAAAQADSADDLE 83
+ ++SI I++ +TKTQT + + + SS + SSD+N + D++E
Sbjct: 1 METSSIEINELPLATKTQTPPASVEPIPMETSSIDELPSSDSN-----------ATDNIE 49
Query: 84 SVRARARRLAEDDRNPSLDVGPNHRPLFTKTTSLSLLTRKDACTYFK 130
+V + +R ED++ N TK T+ S + C+YF+
Sbjct: 50 AVGEKRKRADEDEKT-------NLESSDTKITTPSPWWKTSLCSYFR 89
>sp|Q931I4|DAPE_STAAM Probable succinyl-diaminopimelate desuccinylase OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=dapE PE=3 SV=1
Length = 400
Score = 32.3 bits (72), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 95 DDRNPSLDVGPNHRPLFTKTTSLSLLTRKD-ACTYFKFSEDELNAMLPEGLPTGMLGEFK 153
D SLD+ NHRP+ + S + T KD A +Y + E ++A++ + LG+ K
Sbjct: 302 DSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNK 361
Query: 154 DSMRYALL 161
D++ A+
Sbjct: 362 DNVDLAIF 369
>sp|Q99SN6|DAPE_STAAN Probable succinyl-diaminopimelate desuccinylase OS=Staphylococcus
aureus (strain N315) GN=dapE PE=1 SV=1
Length = 407
Score = 32.3 bits (72), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 95 DDRNPSLDVGPNHRPLFTKTTSLSLLTRKD-ACTYFKFSEDELNAMLPEGLPTGMLGEFK 153
D SLD+ NHRP+ + S + T KD A +Y + E ++A++ + LG+ K
Sbjct: 302 DSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNK 361
Query: 154 DSMRYALL 161
D++ A+
Sbjct: 362 DNVDLAIF 369
>sp|Q8NVL7|DAPE_STAAW Probable succinyl-diaminopimelate desuccinylase OS=Staphylococcus
aureus (strain MW2) GN=dapE PE=3 SV=1
Length = 407
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 95 DDRNPSLDVGPNHRPLFTKTTSLSLLTRKD-ACTYFKFSEDELNAMLPEGLPTGMLGEFK 153
D SLD+ NHRP+ + S + T KD A +Y + E ++A++ + LG+ K
Sbjct: 302 DSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNK 361
Query: 154 DSMRYALL 161
D++ A+
Sbjct: 362 DNVDLAIF 369
>sp|Q6G7T6|DAPE_STAAS Probable succinyl-diaminopimelate desuccinylase OS=Staphylococcus
aureus (strain MSSA476) GN=dapE PE=3 SV=1
Length = 407
Score = 32.0 bits (71), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 95 DDRNPSLDVGPNHRPLFTKTTSLSLLTRKD-ACTYFKFSEDELNAMLPEGLPTGMLGEFK 153
D SLD+ NHRP+ + S + T KD A +Y + E ++A++ + LG+ K
Sbjct: 302 DSNKLSLDIPSNHRPVTSDKNSKLITTIKDVASSYVEQDEIFVSALVGATDASSFLGDNK 361
Query: 154 DSMRYALL 161
D++ A+
Sbjct: 362 DNVDLAIF 369
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,968,077
Number of Sequences: 539616
Number of extensions: 6011355
Number of successful extensions: 21843
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 21562
Number of HSP's gapped (non-prelim): 296
length of query: 404
length of database: 191,569,459
effective HSP length: 120
effective length of query: 284
effective length of database: 126,815,539
effective search space: 36015613076
effective search space used: 36015613076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)