Query 045329
Match_columns 404
No_of_seqs 141 out of 239
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 21:35:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bos_A Putative DNA replicatio 96.6 0.003 1E-07 56.4 6.0 36 191-226 53-88 (242)
2 3ec2_A DNA replication protein 96.5 0.0014 4.9E-08 57.3 3.2 34 191-224 39-73 (180)
3 2orw_A Thymidine kinase; TMTK, 96.2 0.0046 1.6E-07 55.5 4.9 32 193-224 6-37 (184)
4 2w58_A DNAI, primosome compone 96.0 0.0057 1.9E-07 54.2 4.8 33 192-224 56-88 (202)
5 1jbk_A CLPB protein; beta barr 96.0 0.0087 3E-07 50.8 5.6 25 192-216 45-69 (195)
6 1fnn_A CDC6P, cell division co 95.9 0.014 4.9E-07 56.1 7.2 34 192-225 46-80 (389)
7 2b8t_A Thymidine kinase; deoxy 95.8 0.0071 2.4E-07 56.5 4.7 33 192-224 14-46 (223)
8 1l8q_A Chromosomal replication 95.8 0.0067 2.3E-07 58.0 4.5 35 192-226 39-73 (324)
9 2p65_A Hypothetical protein PF 95.8 0.0086 2.9E-07 51.0 4.7 25 192-216 45-69 (187)
10 3uie_A Adenylyl-sulfate kinase 95.8 0.0083 2.8E-07 53.5 4.7 34 192-225 27-60 (200)
11 2v1u_A Cell division control p 95.7 0.01 3.6E-07 56.8 5.6 34 192-225 46-85 (387)
12 2qby_B CDC6 homolog 3, cell di 95.7 0.015 5.2E-07 56.0 6.7 34 192-225 47-88 (384)
13 2zts_A Putative uncharacterize 95.7 0.0071 2.4E-07 54.6 4.1 33 193-225 33-66 (251)
14 2dr3_A UPF0273 protein PH0284; 95.5 0.011 3.7E-07 53.3 4.3 34 192-225 25-58 (247)
15 2kjq_A DNAA-related protein; s 95.4 0.0094 3.2E-07 51.6 3.4 35 192-226 38-72 (149)
16 2qby_A CDC6 homolog 1, cell di 95.3 0.011 3.8E-07 56.4 4.2 34 192-225 47-83 (386)
17 3n70_A Transport activator; si 95.3 0.015 5E-07 49.5 4.4 26 193-218 27-52 (145)
18 2w0m_A SSO2452; RECA, SSPF, un 95.3 0.012 4.3E-07 52.1 4.1 33 192-224 25-57 (235)
19 2qgz_A Helicase loader, putati 95.1 0.018 6.3E-07 55.6 5.0 34 191-224 153-187 (308)
20 3hr8_A Protein RECA; alpha and 95.1 0.015 5.1E-07 58.1 4.3 34 192-225 63-96 (356)
21 2chg_A Replication factor C sm 95.0 0.015 5.2E-07 50.5 3.6 27 192-218 40-66 (226)
22 3lw7_A Adenylate kinase relate 94.9 0.02 6.8E-07 48.2 4.1 29 192-224 3-31 (179)
23 1w5s_A Origin recognition comp 94.9 0.033 1.1E-06 54.0 6.1 34 192-225 52-93 (412)
24 2z0h_A DTMP kinase, thymidylat 94.9 0.029 1E-06 48.9 5.2 34 193-226 3-36 (197)
25 3bh0_A DNAB-like replicative h 94.8 0.026 8.8E-07 54.6 5.2 33 193-225 71-103 (315)
26 3te6_A Regulatory protein SIR3 94.8 0.044 1.5E-06 53.9 6.7 56 163-226 25-88 (318)
27 3io5_A Recombination and repai 94.7 0.022 7.6E-07 56.6 4.4 34 192-225 30-65 (333)
28 4b3f_X DNA-binding protein smu 94.7 0.019 6.6E-07 60.8 4.3 32 193-224 208-239 (646)
29 2zr9_A Protein RECA, recombina 94.6 0.023 7.9E-07 56.2 4.3 35 192-226 63-97 (349)
30 2ehv_A Hypothetical protein PH 94.6 0.025 8.4E-07 51.1 4.1 24 192-215 32-55 (251)
31 1ly1_A Polynucleotide kinase; 94.6 0.03 1E-06 47.8 4.5 31 192-224 4-34 (181)
32 4b4t_M 26S protease regulatory 94.5 0.026 9E-07 57.8 4.6 32 191-225 216-247 (434)
33 1xwi_A SKD1 protein; VPS4B, AA 94.5 0.025 8.4E-07 54.9 4.1 35 191-225 46-80 (322)
34 1nks_A Adenylate kinase; therm 94.5 0.032 1.1E-06 48.2 4.4 34 192-225 3-36 (194)
35 2bjv_A PSP operon transcriptio 94.5 0.038 1.3E-06 51.1 5.1 34 192-225 31-64 (265)
36 1cr0_A DNA primase/helicase; R 94.5 0.029 9.8E-07 53.0 4.4 33 192-224 37-70 (296)
37 2qen_A Walker-type ATPase; unk 94.4 0.025 8.5E-07 53.3 3.9 30 192-224 33-62 (350)
38 1njg_A DNA polymerase III subu 94.4 0.021 7.1E-07 50.0 3.0 27 192-218 47-73 (250)
39 2cvh_A DNA repair and recombin 94.4 0.03 1E-06 49.5 4.2 31 192-225 22-52 (220)
40 4eun_A Thermoresistant glucoki 94.4 0.037 1.3E-06 49.2 4.8 29 192-223 31-59 (200)
41 3a4m_A L-seryl-tRNA(SEC) kinas 94.4 0.034 1.2E-06 52.0 4.7 34 192-225 6-39 (260)
42 1kag_A SKI, shikimate kinase I 94.3 0.038 1.3E-06 47.3 4.3 29 192-223 6-34 (173)
43 2pbr_A DTMP kinase, thymidylat 94.2 0.043 1.5E-06 47.5 4.7 34 192-225 2-35 (195)
44 1ixz_A ATP-dependent metallopr 94.2 0.037 1.3E-06 50.8 4.5 31 191-222 50-80 (254)
45 1knq_A Gluconate kinase; ALFA/ 94.2 0.045 1.5E-06 47.2 4.8 30 192-224 10-39 (175)
46 4b4t_K 26S protease regulatory 94.1 0.037 1.3E-06 56.6 4.6 31 191-224 207-237 (428)
47 1u94_A RECA protein, recombina 94.1 0.04 1.4E-06 54.7 4.7 35 192-226 65-99 (356)
48 2qz4_A Paraplegin; AAA+, SPG7, 94.0 0.056 1.9E-06 49.2 5.2 22 191-212 40-61 (262)
49 2z4s_A Chromosomal replication 93.9 0.034 1.2E-06 56.4 3.9 36 191-226 131-168 (440)
50 3uk6_A RUVB-like 2; hexameric 93.9 0.088 3E-06 50.6 6.6 31 192-222 72-103 (368)
51 4b4t_J 26S protease regulatory 93.9 0.041 1.4E-06 56.0 4.3 32 191-225 183-214 (405)
52 3h4m_A Proteasome-activating n 93.8 0.056 1.9E-06 50.2 4.9 31 191-224 52-82 (285)
53 1n0w_A DNA repair protein RAD5 93.7 0.048 1.6E-06 49.0 4.2 24 192-215 26-49 (243)
54 1kht_A Adenylate kinase; phosp 93.7 0.07 2.4E-06 46.0 5.0 33 192-224 5-39 (192)
55 2bdt_A BH3686; alpha-beta prot 93.7 0.063 2.1E-06 46.9 4.7 29 193-223 5-33 (189)
56 1xx6_A Thymidine kinase; NESG, 93.7 0.061 2.1E-06 48.8 4.7 33 192-224 10-42 (191)
57 1zp6_A Hypothetical protein AT 93.7 0.03 1E-06 48.8 2.6 30 192-222 11-40 (191)
58 3syl_A Protein CBBX; photosynt 93.7 0.055 1.9E-06 50.7 4.6 28 192-219 69-96 (309)
59 1d2n_A N-ethylmaleimide-sensit 93.6 0.081 2.8E-06 49.1 5.6 23 191-213 65-87 (272)
60 2pez_A Bifunctional 3'-phospho 93.6 0.068 2.3E-06 46.4 4.7 33 192-224 7-39 (179)
61 1iy2_A ATP-dependent metallopr 93.5 0.058 2E-06 50.4 4.5 31 191-222 74-104 (278)
62 2yvu_A Probable adenylyl-sulfa 93.5 0.068 2.3E-06 46.7 4.7 34 191-224 14-47 (186)
63 2fna_A Conserved hypothetical 93.5 0.051 1.7E-06 51.2 4.1 24 192-215 32-55 (357)
64 4b4t_I 26S protease regulatory 93.5 0.055 1.9E-06 55.6 4.6 31 191-224 217-247 (437)
65 3bgw_A DNAB-like replicative h 93.5 0.062 2.1E-06 54.8 4.9 34 192-225 199-232 (444)
66 1ye8_A Protein THEP1, hypothet 93.5 0.043 1.5E-06 48.9 3.3 23 192-214 2-24 (178)
67 1xp8_A RECA protein, recombina 93.4 0.055 1.9E-06 54.0 4.3 34 193-226 77-110 (366)
68 2v9p_A Replication protein E1; 93.4 0.06 2.1E-06 52.6 4.5 39 192-232 128-166 (305)
69 2if2_A Dephospho-COA kinase; a 93.3 0.058 2E-06 47.6 3.9 32 192-227 3-34 (204)
70 4a1f_A DNAB helicase, replicat 93.3 0.071 2.4E-06 52.8 4.9 33 193-225 49-81 (338)
71 3eie_A Vacuolar protein sortin 93.3 0.062 2.1E-06 51.6 4.3 31 191-224 52-82 (322)
72 2z43_A DNA repair and recombin 93.3 0.053 1.8E-06 52.5 3.9 34 192-225 109-148 (324)
73 4b4t_H 26S protease regulatory 93.3 0.054 1.9E-06 56.1 4.1 31 191-224 244-274 (467)
74 3upu_A ATP-dependent DNA helic 93.3 0.086 2.9E-06 53.4 5.5 35 192-226 47-83 (459)
75 2chq_A Replication factor C sm 93.3 0.095 3.2E-06 48.8 5.5 27 192-218 40-66 (319)
76 2rhm_A Putative kinase; P-loop 93.2 0.061 2.1E-06 46.6 3.8 30 192-224 7-36 (193)
77 3t61_A Gluconokinase; PSI-biol 93.2 0.069 2.4E-06 47.3 4.2 30 192-224 20-49 (202)
78 3pfi_A Holliday junction ATP-d 93.2 0.064 2.2E-06 51.2 4.2 19 192-210 57-75 (338)
79 4b4t_L 26S protease subunit RP 93.2 0.054 1.8E-06 55.6 3.9 32 191-225 216-247 (437)
80 3tr0_A Guanylate kinase, GMP k 93.1 0.055 1.9E-06 47.5 3.5 22 192-213 9-30 (205)
81 4a74_A DNA repair and recombin 93.1 0.064 2.2E-06 47.7 3.9 24 192-215 27-50 (231)
82 2r8r_A Sensor protein; KDPD, P 93.1 0.094 3.2E-06 49.4 5.1 32 191-222 7-38 (228)
83 3dl0_A Adenylate kinase; phosp 93.0 0.067 2.3E-06 47.8 3.9 30 192-224 2-31 (216)
84 3vfd_A Spastin; ATPase, microt 93.0 0.097 3.3E-06 51.6 5.4 33 191-226 149-181 (389)
85 1nlf_A Regulatory protein REPA 93.0 0.07 2.4E-06 50.0 4.2 26 192-218 32-57 (279)
86 1w4r_A Thymidine kinase; type 93.0 0.077 2.6E-06 48.9 4.3 34 192-225 22-55 (195)
87 3b9p_A CG5977-PA, isoform A; A 93.0 0.086 3E-06 49.3 4.7 32 191-225 55-86 (297)
88 1kgd_A CASK, peripheral plasma 92.9 0.072 2.5E-06 46.7 3.9 22 192-213 7-28 (180)
89 2ged_A SR-beta, signal recogni 92.9 0.087 3E-06 45.4 4.3 22 191-212 49-70 (193)
90 3fb4_A Adenylate kinase; psych 92.9 0.077 2.6E-06 47.2 4.1 30 192-224 2-31 (216)
91 3t15_A Ribulose bisphosphate c 92.7 0.065 2.2E-06 51.1 3.5 22 191-212 37-58 (293)
92 3jvv_A Twitching mobility prot 92.7 0.1 3.6E-06 51.8 5.1 40 192-231 125-165 (356)
93 1ojl_A Transcriptional regulat 92.7 0.094 3.2E-06 50.4 4.6 49 165-223 10-60 (304)
94 1lv7_A FTSH; alpha/beta domain 92.7 0.077 2.6E-06 48.8 3.8 23 191-213 46-68 (257)
95 3kb2_A SPBC2 prophage-derived 92.6 0.075 2.6E-06 45.0 3.4 30 192-224 3-32 (173)
96 1sxj_C Activator 1 40 kDa subu 92.6 0.11 3.9E-06 49.9 5.1 27 192-218 48-74 (340)
97 1y63_A LMAJ004144AAA protein; 92.6 0.11 3.9E-06 45.5 4.7 32 191-225 11-43 (184)
98 1v5w_A DMC1, meiotic recombina 92.5 0.087 3E-06 51.5 4.3 33 192-224 124-162 (343)
99 1sxj_A Activator 1 95 kDa subu 92.5 0.1 3.5E-06 53.8 5.0 33 191-226 78-110 (516)
100 1q57_A DNA primase/helicase; d 92.5 0.065 2.2E-06 54.9 3.4 34 192-225 244-278 (503)
101 3d8b_A Fidgetin-like protein 1 92.5 0.11 3.8E-06 50.8 5.0 33 191-226 118-150 (357)
102 1jjv_A Dephospho-COA kinase; P 92.5 0.077 2.6E-06 47.0 3.4 29 192-224 4-32 (206)
103 1xjc_A MOBB protein homolog; s 92.4 0.13 4.4E-06 46.1 4.9 34 191-224 5-38 (169)
104 2r6a_A DNAB helicase, replicat 92.4 0.1 3.5E-06 52.9 4.7 34 192-225 205-239 (454)
105 1rz3_A Hypothetical protein rb 92.4 0.22 7.7E-06 44.3 6.5 28 192-219 24-51 (201)
106 1via_A Shikimate kinase; struc 92.4 0.093 3.2E-06 45.3 3.8 29 192-223 6-34 (175)
107 1tue_A Replication protein E1; 92.4 0.12 3.9E-06 48.4 4.6 42 166-214 41-82 (212)
108 1uf9_A TT1252 protein; P-loop, 92.4 0.086 2.9E-06 46.0 3.6 30 191-224 9-38 (203)
109 3cm0_A Adenylate kinase; ATP-b 92.4 0.13 4.6E-06 44.4 4.8 30 192-224 6-35 (186)
110 1gtv_A TMK, thymidylate kinase 92.3 0.055 1.9E-06 47.8 2.3 34 193-226 3-36 (214)
111 2x8a_A Nuclear valosin-contain 92.3 0.079 2.7E-06 50.2 3.5 23 191-213 45-67 (274)
112 4gp7_A Metallophosphoesterase; 92.3 0.067 2.3E-06 46.7 2.8 18 192-209 11-28 (171)
113 2qp9_X Vacuolar protein sortin 92.3 0.12 4.2E-06 50.6 5.0 24 191-214 85-108 (355)
114 2zan_A Vacuolar protein sortin 92.2 0.068 2.3E-06 54.2 3.1 32 191-224 168-199 (444)
115 3e1s_A Exodeoxyribonuclease V, 92.2 0.11 3.7E-06 54.8 4.7 33 192-224 206-238 (574)
116 2i3b_A HCR-ntpase, human cance 92.1 0.08 2.7E-06 47.8 3.1 27 192-218 3-29 (189)
117 2dyk_A GTP-binding protein; GT 92.1 0.1 3.5E-06 43.2 3.6 22 191-212 2-23 (161)
118 1tev_A UMP-CMP kinase; ploop, 92.1 0.17 5.7E-06 43.6 5.0 30 192-224 5-34 (196)
119 3a00_A Guanylate kinase, GMP k 92.1 0.082 2.8E-06 46.5 3.1 22 193-214 4-25 (186)
120 3tlx_A Adenylate kinase 2; str 92.1 0.17 5.8E-06 46.8 5.4 33 191-226 30-62 (243)
121 1sxj_B Activator 1 37 kDa subu 92.1 0.14 4.8E-06 47.7 4.9 24 193-216 45-68 (323)
122 4fcw_A Chaperone protein CLPB; 92.1 0.096 3.3E-06 49.0 3.7 27 192-218 49-75 (311)
123 1ofh_A ATP-dependent HSL prote 92.0 0.15 5E-06 47.4 4.9 22 192-213 52-73 (310)
124 1lvg_A Guanylate kinase, GMP k 92.0 0.097 3.3E-06 46.8 3.5 23 192-214 6-28 (198)
125 2j41_A Guanylate kinase; GMP, 91.9 0.089 3E-06 46.1 3.1 22 192-213 8-29 (207)
126 3vaa_A Shikimate kinase, SK; s 91.9 0.13 4.6E-06 45.5 4.4 30 192-224 27-56 (199)
127 1np6_A Molybdopterin-guanine d 91.9 0.16 5.6E-06 45.2 4.9 31 191-221 7-37 (174)
128 3cf0_A Transitional endoplasmi 91.9 0.087 3E-06 50.2 3.2 23 191-213 50-72 (301)
129 3iij_A Coilin-interacting nucl 91.9 0.15 5.1E-06 44.1 4.5 31 192-225 13-43 (180)
130 3co5_A Putative two-component 91.9 0.12 4E-06 43.7 3.8 20 192-211 29-48 (143)
131 1ko7_A HPR kinase/phosphatase; 91.8 0.18 6E-06 49.6 5.4 83 146-228 94-185 (314)
132 2iyv_A Shikimate kinase, SK; t 91.8 0.1 3.5E-06 45.3 3.4 31 192-225 4-34 (184)
133 1qf9_A UMP/CMP kinase, protein 91.8 0.17 5.8E-06 43.5 4.7 30 192-224 8-37 (194)
134 1e6c_A Shikimate kinase; phosp 91.8 0.18 6E-06 43.0 4.8 30 192-224 4-33 (173)
135 3dm5_A SRP54, signal recogniti 91.7 0.33 1.1E-05 49.8 7.6 35 191-225 101-135 (443)
136 2eyu_A Twitching motility prot 91.7 0.17 5.8E-06 47.8 5.0 32 192-223 27-60 (261)
137 1e4v_A Adenylate kinase; trans 91.7 0.12 4E-06 46.3 3.7 30 192-224 2-31 (214)
138 1iqp_A RFCS; clamp loader, ext 91.6 0.11 3.8E-06 48.5 3.7 27 192-218 48-74 (327)
139 1m7g_A Adenylylsulfate kinase; 91.6 0.16 5.3E-06 45.5 4.5 31 192-222 27-60 (211)
140 3hws_A ATP-dependent CLP prote 91.6 0.15 5.3E-06 49.5 4.7 31 191-222 52-82 (363)
141 2bwj_A Adenylate kinase 5; pho 91.5 0.16 5.5E-06 44.2 4.3 30 192-224 14-43 (199)
142 1qhx_A CPT, protein (chloramph 91.5 0.11 3.9E-06 44.5 3.3 32 192-224 5-36 (178)
143 2j9r_A Thymidine kinase; TK1, 91.4 0.18 6.1E-06 47.1 4.7 34 192-225 30-63 (214)
144 2i1q_A DNA repair and recombin 91.4 0.13 4.6E-06 49.2 4.0 23 192-214 100-122 (322)
145 2plr_A DTMP kinase, probable t 91.4 0.19 6.4E-06 44.0 4.6 27 192-218 6-32 (213)
146 2c95_A Adenylate kinase 1; tra 91.4 0.17 5.9E-06 43.8 4.3 30 192-224 11-40 (196)
147 2q6t_A DNAB replication FORK h 91.3 0.14 4.9E-06 51.6 4.3 34 192-225 202-236 (444)
148 1nij_A Hypothetical protein YJ 91.3 0.079 2.7E-06 51.2 2.3 41 191-231 5-45 (318)
149 3tau_A Guanylate kinase, GMP k 91.2 0.11 3.9E-06 46.6 3.1 22 192-213 10-31 (208)
150 1z2a_A RAS-related protein RAB 91.2 0.14 4.9E-06 42.5 3.5 22 191-212 6-27 (168)
151 1kao_A RAP2A; GTP-binding prot 91.2 0.14 4.8E-06 42.2 3.5 21 192-212 5-25 (167)
152 1ukz_A Uridylate kinase; trans 91.2 0.23 7.8E-06 43.7 5.0 32 191-225 16-47 (203)
153 3trf_A Shikimate kinase, SK; a 91.1 0.15 5.1E-06 44.1 3.7 30 192-224 7-36 (185)
154 1ek0_A Protein (GTP-binding pr 91.1 0.15 5E-06 42.4 3.5 21 192-212 5-25 (170)
155 2px0_A Flagellar biosynthesis 91.1 0.16 5.5E-06 48.9 4.2 34 192-225 107-141 (296)
156 2r62_A Cell division protease 91.1 0.069 2.4E-06 49.2 1.6 22 192-213 46-67 (268)
157 1cke_A CK, MSSA, protein (cyti 91.0 0.13 4.4E-06 45.9 3.3 21 192-212 7-27 (227)
158 1sxj_E Activator 1 40 kDa subu 91.0 0.18 6.3E-06 48.1 4.6 29 193-221 39-69 (354)
159 1gvn_B Zeta; postsegregational 91.0 0.24 8E-06 47.3 5.2 31 192-223 35-65 (287)
160 1vht_A Dephospho-COA kinase; s 91.0 0.2 6.9E-06 44.7 4.5 29 192-224 6-34 (218)
161 2jaq_A Deoxyguanosine kinase; 90.9 0.16 5.4E-06 44.2 3.7 31 192-225 2-32 (205)
162 1u8z_A RAS-related protein RAL 90.9 0.16 5.3E-06 42.0 3.5 22 191-212 5-26 (168)
163 1znw_A Guanylate kinase, GMP k 90.9 0.13 4.4E-06 46.0 3.1 23 192-214 22-44 (207)
164 3lda_A DNA repair protein RAD5 90.9 0.14 4.9E-06 51.6 3.8 24 192-215 180-203 (400)
165 2ce2_X GTPase HRAS; signaling 90.9 0.14 4.8E-06 42.1 3.1 21 192-212 5-25 (166)
166 2erx_A GTP-binding protein DI- 90.9 0.15 5E-06 42.4 3.3 22 191-212 4-25 (172)
167 2f9l_A RAB11B, member RAS onco 90.9 0.14 4.9E-06 44.8 3.3 22 191-212 6-27 (199)
168 2xb4_A Adenylate kinase; ATP-b 90.8 0.24 8.1E-06 44.9 4.9 30 192-224 2-31 (223)
169 1vma_A Cell division protein F 90.8 0.2 6.9E-06 48.6 4.7 33 192-224 106-138 (306)
170 2cdn_A Adenylate kinase; phosp 90.8 0.18 6.3E-06 44.4 4.0 30 192-224 22-51 (201)
171 3pqc_A Probable GTP-binding pr 90.8 0.14 4.8E-06 43.7 3.2 23 190-212 23-45 (195)
172 2iut_A DNA translocase FTSK; n 90.8 1.8 6.1E-05 45.9 12.2 68 191-260 215-288 (574)
173 2qor_A Guanylate kinase; phosp 90.8 0.15 5.1E-06 45.4 3.5 22 192-213 14-35 (204)
174 1hqc_A RUVB; extended AAA-ATPa 90.8 0.14 4.9E-06 48.1 3.5 23 192-214 40-62 (324)
175 1z08_A RAS-related protein RAB 90.7 0.16 5.6E-06 42.3 3.5 22 191-212 7-28 (170)
176 1wms_A RAB-9, RAB9, RAS-relate 90.7 0.16 5.6E-06 42.7 3.5 22 191-212 8-29 (177)
177 3asz_A Uridine kinase; cytidin 90.7 0.12 4.2E-06 45.7 2.8 22 192-213 8-29 (211)
178 2ze6_A Isopentenyl transferase 90.7 0.15 5E-06 47.6 3.4 31 193-226 4-34 (253)
179 2bbw_A Adenylate kinase 4, AK4 90.7 0.14 4.9E-06 46.9 3.3 21 192-212 29-49 (246)
180 1jwy_B Dynamin A GTPase domain 90.6 0.29 1E-05 46.0 5.5 45 166-213 3-47 (315)
181 2zej_A Dardarin, leucine-rich 90.6 0.13 4.4E-06 44.5 2.8 21 192-212 4-24 (184)
182 1u0j_A DNA replication protein 90.6 0.33 1.1E-05 46.7 5.9 22 191-212 105-126 (267)
183 1z0j_A RAB-22, RAS-related pro 90.6 0.17 5.9E-06 42.0 3.5 22 191-212 7-28 (170)
184 2pt5_A Shikimate kinase, SK; a 90.6 0.18 6.3E-06 42.7 3.7 29 192-223 2-30 (168)
185 2wji_A Ferrous iron transport 90.5 0.16 5.6E-06 43.0 3.3 21 191-211 4-24 (165)
186 2nzj_A GTP-binding protein REM 90.5 0.17 5.7E-06 42.4 3.3 21 191-211 5-25 (175)
187 1ltq_A Polynucleotide kinase; 90.5 0.22 7.5E-06 46.7 4.5 31 192-224 4-34 (301)
188 1ky3_A GTP-binding protein YPT 90.4 0.18 6.1E-06 42.4 3.5 22 191-212 9-30 (182)
189 2gk6_A Regulator of nonsense t 90.4 0.2 7E-06 52.9 4.6 35 192-226 197-233 (624)
190 2wjg_A FEOB, ferrous iron tran 90.3 0.17 5.8E-06 43.2 3.3 21 191-211 8-28 (188)
191 1pzn_A RAD51, DNA repair and r 90.3 0.18 6.1E-06 49.6 3.9 23 192-214 133-155 (349)
192 1in4_A RUVB, holliday junction 90.3 0.15 5.2E-06 49.3 3.3 23 192-214 53-75 (334)
193 1z6g_A Guanylate kinase; struc 90.3 0.15 5.2E-06 46.3 3.1 29 192-222 25-53 (218)
194 1um8_A ATP-dependent CLP prote 90.3 0.24 8.1E-06 48.3 4.7 20 192-211 74-93 (376)
195 3kl4_A SRP54, signal recogniti 90.3 0.2 6.8E-06 51.3 4.3 35 191-225 98-132 (433)
196 1g16_A RAS-related protein SEC 90.3 0.16 5.4E-06 42.3 2.9 22 191-212 4-25 (170)
197 1jr3_A DNA polymerase III subu 90.3 0.17 5.7E-06 48.5 3.5 23 192-214 40-62 (373)
198 3q85_A GTP-binding protein REM 90.2 0.18 6.2E-06 42.1 3.3 20 192-211 4-23 (169)
199 1s96_A Guanylate kinase, GMP k 90.2 0.15 5.3E-06 46.8 3.1 22 192-213 18-39 (219)
200 1sxj_D Activator 1 41 kDa subu 90.2 0.17 5.8E-06 48.0 3.5 22 193-214 61-82 (353)
201 1nn5_A Similar to deoxythymidy 90.2 0.25 8.4E-06 43.5 4.3 33 192-224 11-43 (215)
202 2aka_B Dynamin-1; fusion prote 90.2 0.38 1.3E-05 44.7 5.9 22 191-212 27-48 (299)
203 1oix_A RAS-related protein RAB 90.2 0.15 5.2E-06 44.6 2.9 22 191-212 30-51 (191)
204 1z0f_A RAB14, member RAS oncog 90.2 0.2 6.7E-06 42.1 3.5 22 191-212 16-37 (179)
205 1r2q_A RAS-related protein RAB 90.2 0.2 6.8E-06 41.5 3.5 22 191-212 7-28 (170)
206 3c8u_A Fructokinase; YP_612366 90.1 0.24 8.3E-06 44.2 4.2 28 191-218 23-50 (208)
207 1aky_A Adenylate kinase; ATP:A 90.1 0.31 1.1E-05 43.6 5.0 30 192-224 6-35 (220)
208 1c1y_A RAS-related protein RAP 90.0 0.19 6.6E-06 41.6 3.3 21 192-212 5-25 (167)
209 3bc1_A RAS-related protein RAB 90.0 0.2 7E-06 42.5 3.5 22 191-212 12-33 (195)
210 1upt_A ARL1, ADP-ribosylation 90.0 0.21 7.1E-06 41.7 3.5 22 191-212 8-29 (171)
211 3lnc_A Guanylate kinase, GMP k 90.0 0.11 3.9E-06 47.0 1.9 22 192-213 29-51 (231)
212 2hf9_A Probable hydrogenase ni 90.0 0.27 9.3E-06 43.6 4.4 27 191-217 39-65 (226)
213 1svi_A GTP-binding protein YSX 90.0 0.16 5.5E-06 43.7 2.8 22 191-212 24-45 (195)
214 3tqf_A HPR(Ser) kinase; transf 89.9 0.25 8.6E-06 45.1 4.2 35 191-225 17-54 (181)
215 1r8s_A ADP-ribosylation factor 89.9 0.22 7.4E-06 41.4 3.5 21 192-212 2-22 (164)
216 2y8e_A RAB-protein 6, GH09086P 89.9 0.19 6.4E-06 42.2 3.1 22 191-212 15-36 (179)
217 1yrb_A ATP(GTP)binding protein 89.9 0.25 8.7E-06 45.0 4.3 33 191-224 15-47 (262)
218 3clv_A RAB5 protein, putative; 89.8 0.21 7.2E-06 42.5 3.5 22 191-212 8-29 (208)
219 3b9q_A Chloroplast SRP recepto 89.8 0.28 9.6E-06 47.4 4.7 31 192-222 102-133 (302)
220 3u61_B DNA polymerase accessor 89.8 0.45 1.5E-05 45.0 6.1 31 192-225 50-80 (324)
221 3p32_A Probable GTPase RV1496/ 89.8 0.3 1E-05 47.8 4.9 32 191-222 80-111 (355)
222 3e70_C DPA, signal recognition 89.7 0.29 9.8E-06 48.0 4.7 32 192-223 131-162 (328)
223 1zd8_A GTP:AMP phosphotransfer 89.7 0.2 6.7E-06 45.3 3.3 31 191-224 8-38 (227)
224 2lkc_A Translation initiation 89.7 0.21 7.3E-06 42.0 3.3 22 191-212 9-30 (178)
225 1tf7_A KAIC; homohexamer, hexa 89.6 0.23 8E-06 51.2 4.2 28 192-219 283-310 (525)
226 2efe_B Small GTP-binding prote 89.6 0.22 7.7E-06 42.0 3.5 22 191-212 13-34 (181)
227 3be4_A Adenylate kinase; malar 89.6 0.28 9.6E-06 44.1 4.3 31 191-224 6-36 (217)
228 4dsu_A GTPase KRAS, isoform 2B 89.6 0.21 7.3E-06 42.3 3.3 22 191-212 5-26 (189)
229 3q72_A GTP-binding protein RAD 89.5 0.18 6.3E-06 41.9 2.8 20 192-211 4-23 (166)
230 2a9k_A RAS-related protein RAL 89.5 0.22 7.6E-06 42.0 3.3 22 191-212 19-40 (187)
231 1zu4_A FTSY; GTPase, signal re 89.5 0.31 1E-05 47.6 4.7 33 192-224 107-139 (320)
232 2cxx_A Probable GTP-binding pr 89.5 0.19 6.4E-06 42.8 2.8 21 192-212 3-23 (190)
233 3cmu_A Protein RECA, recombina 89.5 0.24 8.2E-06 59.5 4.6 36 192-227 1429-1464(2050)
234 1nrj_B SR-beta, signal recogni 89.4 0.23 8E-06 43.7 3.5 22 191-212 13-34 (218)
235 3hu3_A Transitional endoplasmi 89.3 0.31 1.1E-05 50.3 4.9 32 191-225 239-270 (489)
236 2hxs_A RAB-26, RAS-related pro 89.3 0.23 8E-06 41.8 3.3 22 191-212 7-28 (178)
237 1rj9_A FTSY, signal recognitio 89.3 0.32 1.1E-05 47.1 4.6 31 192-222 104-135 (304)
238 2v3c_C SRP54, signal recogniti 89.3 0.15 5.3E-06 51.9 2.5 34 192-225 101-134 (432)
239 2vhj_A Ntpase P4, P4; non- hyd 89.3 0.087 3E-06 52.3 0.6 22 192-213 125-146 (331)
240 2gj8_A MNME, tRNA modification 89.3 0.2 7E-06 43.0 2.9 22 191-212 5-26 (172)
241 2wsm_A Hydrogenase expression/ 89.2 0.25 8.4E-06 43.8 3.5 27 191-217 31-57 (221)
242 2g6b_A RAS-related protein RAB 89.2 0.25 8.7E-06 41.6 3.5 22 191-212 11-32 (180)
243 3tw8_B RAS-related protein RAB 89.2 0.23 7.7E-06 41.7 3.1 21 191-211 10-30 (181)
244 3kkq_A RAS-related protein M-R 89.2 0.24 8.2E-06 42.1 3.3 22 191-212 19-40 (183)
245 3ihw_A Centg3; RAS, centaurin, 89.2 0.25 8.5E-06 42.9 3.5 22 191-212 21-42 (184)
246 2fn4_A P23, RAS-related protei 89.1 0.23 7.7E-06 41.7 3.1 23 191-213 10-32 (181)
247 2wwf_A Thymidilate kinase, put 89.1 0.38 1.3E-05 42.3 4.7 28 191-218 11-38 (212)
248 2v54_A DTMP kinase, thymidylat 89.1 0.23 7.8E-06 43.4 3.1 33 192-226 6-40 (204)
249 2bme_A RAB4A, RAS-related prot 89.1 0.23 7.9E-06 42.2 3.1 22 191-212 11-32 (186)
250 3qks_A DNA double-strand break 89.0 0.26 9E-06 44.4 3.6 23 192-215 25-47 (203)
251 3con_A GTPase NRAS; structural 88.9 0.27 9.2E-06 42.1 3.5 22 191-212 22-43 (190)
252 3kta_A Chromosome segregation 88.9 0.21 7E-06 43.2 2.7 22 193-215 29-50 (182)
253 3ney_A 55 kDa erythrocyte memb 88.9 0.25 8.7E-06 45.2 3.5 22 192-213 21-42 (197)
254 1mh1_A RAC1; GTP-binding, GTPa 88.9 0.28 9.5E-06 41.5 3.5 22 191-212 6-27 (186)
255 2ewv_A Twitching motility prot 88.8 0.39 1.3E-05 47.7 5.0 31 192-222 138-170 (372)
256 3tkl_A RAS-related protein RAB 88.8 0.26 8.9E-06 42.3 3.3 22 191-212 17-38 (196)
257 2oil_A CATX-8, RAS-related pro 88.8 0.28 9.5E-06 42.3 3.5 22 191-212 26-47 (193)
258 2orv_A Thymidine kinase; TP4A 88.8 0.38 1.3E-05 45.5 4.6 34 192-225 21-54 (234)
259 1ex7_A Guanylate kinase; subst 88.8 0.25 8.6E-06 44.7 3.3 20 193-212 4-23 (186)
260 1g8p_A Magnesium-chelatase 38 88.8 0.15 5.1E-06 48.4 1.9 21 192-212 47-67 (350)
261 3qf7_A RAD50; ABC-ATPase, ATPa 88.7 0.25 8.5E-06 48.8 3.5 22 193-215 26-47 (365)
262 3tif_A Uncharacterized ABC tra 88.7 0.22 7.7E-06 46.1 3.0 31 192-222 33-64 (235)
263 2c9o_A RUVB-like 1; hexameric 88.7 0.43 1.5E-05 48.3 5.3 23 191-213 64-86 (456)
264 2vli_A Antibiotic resistance p 88.6 0.19 6.5E-06 43.2 2.3 28 192-222 7-34 (183)
265 4eaq_A DTMP kinase, thymidylat 88.6 0.38 1.3E-05 44.3 4.4 33 191-224 27-59 (229)
266 2bov_A RAla, RAS-related prote 88.6 0.27 9.3E-06 42.5 3.3 22 191-212 15-36 (206)
267 3t5g_A GTP-binding protein RHE 88.6 0.24 8.4E-06 42.0 2.9 21 191-211 7-27 (181)
268 1zak_A Adenylate kinase; ATP:A 88.5 0.25 8.6E-06 44.3 3.1 28 192-222 7-34 (222)
269 1p9r_A General secretion pathw 88.5 0.32 1.1E-05 49.3 4.3 32 192-223 169-201 (418)
270 3lxx_A GTPase IMAP family memb 88.5 0.27 9.1E-06 44.7 3.3 22 191-212 30-51 (239)
271 4edh_A DTMP kinase, thymidylat 88.5 0.44 1.5E-05 43.6 4.8 34 192-225 8-41 (213)
272 1z06_A RAS-related protein RAB 88.5 0.3 1E-05 42.0 3.5 22 191-212 21-42 (189)
273 3bwd_D RAC-like GTP-binding pr 88.5 0.31 1E-05 41.2 3.5 22 191-212 9-30 (182)
274 2a5j_A RAS-related protein RAB 88.5 0.3 1E-05 42.2 3.5 22 191-212 22-43 (191)
275 1x3s_A RAS-related protein RAB 88.5 0.3 1E-05 41.7 3.5 22 191-212 16-37 (195)
276 1vg8_A RAS-related protein RAB 88.5 0.3 1E-05 42.4 3.5 23 191-213 9-31 (207)
277 4bas_A ADP-ribosylation factor 88.4 0.28 9.5E-06 42.2 3.3 23 190-212 17-39 (199)
278 2r44_A Uncharacterized protein 88.4 0.22 7.5E-06 47.4 2.8 31 192-223 48-78 (331)
279 2f6r_A COA synthase, bifunctio 88.4 0.43 1.5E-05 45.2 4.8 30 191-224 76-105 (281)
280 1zuh_A Shikimate kinase; alpha 88.4 0.31 1.1E-05 41.6 3.5 29 193-224 10-38 (168)
281 1j8m_F SRP54, signal recogniti 88.3 0.32 1.1E-05 46.9 3.9 33 192-224 100-132 (297)
282 2cjw_A GTP-binding protein GEM 88.3 0.29 1E-05 42.9 3.3 21 191-211 7-27 (192)
283 2p5t_B PEZT; postsegregational 88.2 0.27 9.3E-06 45.5 3.2 31 191-222 33-63 (253)
284 2dhr_A FTSH; AAA+ protein, hex 88.2 0.36 1.2E-05 50.2 4.4 34 191-225 65-98 (499)
285 2iwr_A Centaurin gamma 1; ANK 88.2 0.24 8.4E-06 41.8 2.7 22 191-212 8-29 (178)
286 1zd9_A ADP-ribosylation factor 88.2 0.32 1.1E-05 42.0 3.5 22 191-212 23-44 (188)
287 2jeo_A Uridine-cytidine kinase 88.2 0.27 9.2E-06 45.1 3.1 22 192-213 27-48 (245)
288 2gf9_A RAS-related protein RAB 88.1 0.31 1.1E-05 41.9 3.3 22 191-212 23-44 (189)
289 1m7b_A RND3/RHOE small GTP-bin 88.1 0.29 1E-05 42.0 3.1 22 191-212 8-29 (184)
290 3pxg_A Negative regulator of g 88.0 0.47 1.6E-05 48.3 5.1 23 192-214 203-225 (468)
291 1fzq_A ADP-ribosylation factor 88.0 0.31 1E-05 42.0 3.2 21 191-211 17-37 (181)
292 1qvr_A CLPB protein; coiled co 88.0 0.35 1.2E-05 52.9 4.4 35 192-226 193-234 (854)
293 3dz8_A RAS-related protein RAB 88.0 0.28 9.4E-06 42.4 2.9 23 191-213 24-46 (191)
294 1f2t_A RAD50 ABC-ATPase; DNA d 88.0 0.36 1.2E-05 41.5 3.6 23 192-215 25-47 (149)
295 1zbd_A Rabphilin-3A; G protein 88.0 0.31 1.1E-05 42.3 3.3 22 191-212 9-30 (203)
296 2www_A Methylmalonic aciduria 87.9 0.4 1.4E-05 47.0 4.4 27 191-217 75-101 (349)
297 3cph_A RAS-related protein SEC 87.8 0.35 1.2E-05 42.1 3.5 22 191-212 21-42 (213)
298 1sq5_A Pantothenate kinase; P- 87.7 0.39 1.3E-05 46.0 4.1 31 192-222 82-115 (308)
299 2pcj_A ABC transporter, lipopr 87.7 0.25 8.5E-06 45.4 2.6 31 192-222 32-63 (224)
300 3cmw_A Protein RECA, recombina 87.7 0.38 1.3E-05 56.9 4.7 35 192-226 385-419 (1706)
301 3reg_A RHO-like small GTPase; 87.7 0.36 1.2E-05 41.7 3.5 22 191-212 24-45 (194)
302 2qt1_A Nicotinamide riboside k 87.7 0.27 9.3E-06 43.5 2.8 31 192-224 23-53 (207)
303 2gf0_A GTP-binding protein DI- 87.7 0.31 1.1E-05 41.8 3.1 22 191-212 9-30 (199)
304 2og2_A Putative signal recogni 87.7 0.46 1.6E-05 47.3 4.7 31 192-222 159-190 (359)
305 3c5c_A RAS-like protein 12; GD 87.6 0.36 1.2E-05 41.8 3.5 22 191-212 22-43 (187)
306 2fg5_A RAB-22B, RAS-related pr 87.6 0.32 1.1E-05 42.2 3.1 22 191-212 24-45 (192)
307 3t1o_A Gliding protein MGLA; G 87.5 0.35 1.2E-05 41.2 3.3 21 191-212 15-35 (198)
308 2vp4_A Deoxynucleoside kinase; 87.5 0.23 7.9E-06 45.2 2.3 22 192-213 22-43 (230)
309 1htw_A HI0065; nucleotide-bind 87.5 0.33 1.1E-05 42.5 3.1 22 192-213 35-56 (158)
310 3pvs_A Replication-associated 87.5 0.34 1.2E-05 49.4 3.7 21 192-212 52-72 (447)
311 3llm_A ATP-dependent RNA helic 87.5 0.6 2.1E-05 42.4 5.1 22 192-213 78-99 (235)
312 2f1r_A Molybdopterin-guanine d 87.5 0.28 9.6E-06 43.5 2.7 27 192-218 4-30 (171)
313 2atv_A RERG, RAS-like estrogen 87.5 0.37 1.3E-05 41.8 3.5 22 191-212 29-50 (196)
314 3cf2_A TER ATPase, transitiona 87.4 0.42 1.4E-05 52.6 4.6 20 191-210 239-258 (806)
315 2fh5_B SR-beta, signal recogni 87.4 0.37 1.3E-05 42.3 3.5 23 191-213 8-30 (214)
316 1ksh_A ARF-like protein 2; sma 87.4 0.3 1E-05 41.7 2.8 22 191-212 19-40 (186)
317 2onk_A Molybdate/tungstate ABC 87.4 0.31 1.1E-05 45.5 3.1 31 192-222 26-57 (240)
318 2cbz_A Multidrug resistance-as 87.4 0.3 1E-05 45.3 3.0 36 192-227 33-74 (237)
319 2wjy_A Regulator of nonsense t 87.4 0.42 1.4E-05 52.4 4.5 35 192-226 373-409 (800)
320 2h17_A ADP-ribosylation factor 87.4 0.28 9.4E-06 42.0 2.5 22 191-212 22-43 (181)
321 4e22_A Cytidylate kinase; P-lo 87.4 0.31 1.1E-05 45.2 3.1 20 192-211 29-48 (252)
322 1zj6_A ADP-ribosylation factor 87.4 0.32 1.1E-05 41.8 2.9 21 191-211 17-37 (187)
323 2j37_W Signal recognition part 87.3 0.52 1.8E-05 49.1 5.0 34 191-224 102-135 (504)
324 1moz_A ARL1, ADP-ribosylation 87.3 0.26 8.9E-06 41.8 2.3 21 191-211 19-39 (183)
325 2bcg_Y Protein YP2, GTP-bindin 87.3 0.34 1.2E-05 42.3 3.1 22 191-212 9-30 (206)
326 4ag6_A VIRB4 ATPase, type IV s 87.3 0.55 1.9E-05 46.1 5.0 33 192-224 37-69 (392)
327 2p5s_A RAS and EF-hand domain 87.2 0.39 1.3E-05 41.8 3.5 22 191-212 29-50 (199)
328 2qm8_A GTPase/ATPase; G protei 87.2 0.55 1.9E-05 45.8 4.9 32 191-222 56-88 (337)
329 1sgw_A Putative ABC transporte 87.1 0.32 1.1E-05 44.7 2.9 31 192-222 37-68 (214)
330 2o52_A RAS-related protein RAB 87.0 0.34 1.1E-05 42.5 2.9 22 191-212 26-47 (200)
331 1w36_D RECD, exodeoxyribonucle 87.0 0.58 2E-05 49.4 5.3 35 192-226 166-205 (608)
332 1b0u_A Histidine permease; ABC 87.0 0.32 1.1E-05 45.9 2.9 31 192-222 34-65 (262)
333 3cmu_A Protein RECA, recombina 87.0 0.43 1.5E-05 57.4 4.6 36 192-227 385-420 (2050)
334 3b85_A Phosphate starvation-in 86.9 0.26 9E-06 45.0 2.3 29 192-220 24-52 (208)
335 3oes_A GTPase rhebl1; small GT 86.9 0.34 1.2E-05 42.3 2.9 22 191-212 25-46 (201)
336 1ji0_A ABC transporter; ATP bi 86.9 0.33 1.1E-05 45.0 3.0 31 192-222 34-65 (240)
337 2f7s_A C25KG, RAS-related prot 86.9 0.39 1.3E-05 42.2 3.3 22 191-212 26-47 (217)
338 2q3h_A RAS homolog gene family 86.8 0.4 1.4E-05 41.5 3.3 22 191-212 21-42 (201)
339 2yhs_A FTSY, cell division pro 86.8 0.52 1.8E-05 49.2 4.7 32 192-223 295-327 (503)
340 1g6h_A High-affinity branched- 86.8 0.34 1.1E-05 45.5 3.0 31 192-222 35-66 (257)
341 3hjn_A DTMP kinase, thymidylat 86.8 0.66 2.3E-05 41.7 4.8 32 193-224 3-34 (197)
342 1mv5_A LMRA, multidrug resista 86.8 0.34 1.2E-05 45.0 2.9 31 192-222 30-61 (243)
343 1lw7_A Transcriptional regulat 86.8 0.41 1.4E-05 46.8 3.7 23 191-213 171-193 (365)
344 1m2o_B GTP-binding protein SAR 86.7 0.38 1.3E-05 41.8 3.1 22 191-212 24-45 (190)
345 2ff7_A Alpha-hemolysin translo 86.7 0.34 1.2E-05 45.3 3.0 22 192-213 37-58 (247)
346 1ak2_A Adenylate kinase isoenz 86.7 0.44 1.5E-05 43.2 3.7 31 191-224 17-47 (233)
347 3cmw_A Protein RECA, recombina 86.7 0.47 1.6E-05 56.1 4.7 34 192-225 734-767 (1706)
348 2il1_A RAB12; G-protein, GDP, 86.6 0.39 1.3E-05 41.6 3.1 22 191-212 27-48 (192)
349 3lxw_A GTPase IMAP family memb 86.6 0.4 1.4E-05 44.3 3.3 22 191-212 22-43 (247)
350 1ls1_A Signal recognition part 86.6 0.6 2E-05 44.7 4.7 33 192-224 100-132 (295)
351 2d2e_A SUFC protein; ABC-ATPas 86.6 0.37 1.3E-05 45.0 3.1 31 192-222 31-64 (250)
352 2pze_A Cystic fibrosis transme 86.6 0.35 1.2E-05 44.5 2.9 38 192-229 36-79 (229)
353 3gfo_A Cobalt import ATP-bindi 86.5 0.35 1.2E-05 46.2 2.9 31 192-222 36-67 (275)
354 1pui_A ENGB, probable GTP-bind 86.5 0.29 1E-05 42.7 2.2 21 191-211 27-47 (210)
355 2xxa_A Signal recognition part 86.4 0.64 2.2E-05 47.3 5.0 34 191-224 101-135 (433)
356 3tqc_A Pantothenate kinase; bi 86.4 0.57 1.9E-05 45.9 4.5 24 192-215 94-117 (321)
357 3lfu_A DNA helicase II; SF1 he 86.4 0.51 1.7E-05 49.0 4.4 25 193-217 25-49 (647)
358 2grj_A Dephospho-COA kinase; T 86.4 0.7 2.4E-05 41.6 4.8 30 191-223 13-42 (192)
359 3crm_A TRNA delta(2)-isopenten 86.3 0.88 3E-05 44.8 5.8 34 192-228 7-40 (323)
360 2zu0_C Probable ATP-dependent 86.3 0.39 1.3E-05 45.4 3.1 31 192-222 48-81 (267)
361 3def_A T7I23.11 protein; chlor 86.2 0.33 1.1E-05 45.1 2.5 22 191-212 37-58 (262)
362 3szr_A Interferon-induced GTP- 86.2 0.6 2E-05 49.4 4.8 43 165-213 26-68 (608)
363 2fu5_C RAS-related protein RAB 86.2 0.27 9.1E-06 41.8 1.8 22 191-212 9-30 (183)
364 2qi9_C Vitamin B12 import ATP- 86.0 0.39 1.3E-05 45.1 2.9 31 192-222 28-58 (249)
365 4dhe_A Probable GTP-binding pr 86.0 0.25 8.6E-06 43.6 1.5 23 190-212 29-51 (223)
366 2ew1_A RAS-related protein RAB 85.9 0.44 1.5E-05 42.2 3.1 22 191-212 27-48 (201)
367 2xzl_A ATP-dependent helicase 85.9 0.5 1.7E-05 51.7 4.1 35 192-226 377-413 (802)
368 2ghi_A Transport protein; mult 85.8 0.4 1.4E-05 45.1 3.0 31 192-222 48-78 (260)
369 2olj_A Amino acid ABC transpor 85.8 0.4 1.4E-05 45.4 2.9 31 192-222 52-83 (263)
370 2yz2_A Putative ABC transporte 85.8 0.41 1.4E-05 45.2 3.0 31 192-222 35-66 (266)
371 3sop_A Neuronal-specific septi 85.8 0.39 1.3E-05 45.5 2.9 22 192-213 4-25 (270)
372 4g1u_C Hemin import ATP-bindin 85.7 0.41 1.4E-05 45.4 3.0 31 192-222 39-70 (266)
373 1e9r_A Conjugal transfer prote 85.7 0.71 2.4E-05 45.9 4.9 39 191-229 54-93 (437)
374 3r20_A Cytidylate kinase; stru 85.7 0.58 2E-05 43.8 4.0 20 192-211 11-30 (233)
375 3cbq_A GTP-binding protein REM 85.7 0.39 1.3E-05 42.2 2.6 21 191-211 24-44 (195)
376 2ixe_A Antigen peptide transpo 85.7 0.41 1.4E-05 45.4 3.0 31 192-222 47-78 (271)
377 2qu8_A Putative nucleolar GTP- 85.7 0.42 1.5E-05 42.8 2.9 22 191-212 30-51 (228)
378 3q3j_B RHO-related GTP-binding 85.7 0.52 1.8E-05 42.0 3.5 23 191-213 28-50 (214)
379 2xtp_A GTPase IMAP family memb 85.6 0.42 1.4E-05 43.8 2.9 22 191-212 23-44 (260)
380 2h57_A ADP-ribosylation factor 85.6 0.34 1.2E-05 41.7 2.2 22 191-212 22-43 (190)
381 2fv8_A H6, RHO-related GTP-bin 85.6 0.46 1.6E-05 41.7 3.1 22 191-212 26-47 (207)
382 2g3y_A GTP-binding protein GEM 85.6 0.48 1.6E-05 42.9 3.3 21 191-211 38-58 (211)
383 3cf2_A TER ATPase, transitiona 85.6 0.68 2.3E-05 50.9 5.0 17 191-207 512-528 (806)
384 2ce7_A Cell division protein F 85.6 0.51 1.7E-05 48.7 3.8 22 191-212 50-71 (476)
385 2gco_A H9, RHO-related GTP-bin 85.5 0.45 1.5E-05 41.6 2.9 22 191-212 26-47 (201)
386 2r2a_A Uncharacterized protein 85.5 0.46 1.6E-05 43.2 3.1 17 193-209 8-24 (199)
387 1vpl_A ABC transporter, ATP-bi 85.5 0.42 1.4E-05 45.0 2.9 31 192-222 43-74 (256)
388 3ice_A Transcription terminati 85.5 0.72 2.5E-05 47.1 4.7 34 191-224 175-210 (422)
389 1of1_A Thymidine kinase; trans 85.4 0.48 1.7E-05 47.7 3.5 35 191-225 50-84 (376)
390 1ypw_A Transitional endoplasmi 85.4 0.6 2E-05 51.0 4.5 32 191-225 239-270 (806)
391 1h65_A Chloroplast outer envel 85.4 0.77 2.6E-05 42.7 4.7 22 191-212 40-61 (270)
392 2j1l_A RHO-related GTP-binding 85.3 0.46 1.6E-05 42.1 2.9 22 191-212 35-56 (214)
393 2b6h_A ADP-ribosylation factor 85.3 0.44 1.5E-05 41.5 2.8 21 191-211 30-50 (192)
394 1gwn_A RHO-related GTP-binding 85.2 0.46 1.6E-05 42.2 2.9 22 191-212 29-50 (205)
395 2nq2_C Hypothetical ABC transp 85.2 0.44 1.5E-05 44.7 2.9 36 192-227 33-74 (253)
396 3iby_A Ferrous iron transport 85.2 0.45 1.5E-05 44.5 3.0 31 191-225 2-32 (256)
397 2atx_A Small GTP binding prote 85.2 0.51 1.7E-05 40.6 3.1 22 191-212 19-40 (194)
398 4gzl_A RAS-related C3 botulinu 85.1 0.51 1.7E-05 41.5 3.1 22 191-212 31-52 (204)
399 2ocp_A DGK, deoxyguanosine kin 85.0 0.54 1.8E-05 42.8 3.3 33 192-226 4-36 (241)
400 1a5t_A Delta prime, HOLB; zinc 85.0 0.89 3.1E-05 43.8 5.1 24 192-215 26-49 (334)
401 4dkx_A RAS-related protein RAB 85.0 0.57 2E-05 42.7 3.5 22 191-212 14-35 (216)
402 1e2k_A Thymidine kinase; trans 85.0 0.45 1.5E-05 47.0 2.9 35 191-225 5-39 (331)
403 3nwj_A ATSK2; P loop, shikimat 85.0 0.5 1.7E-05 44.5 3.2 30 192-224 50-79 (250)
404 3fvq_A Fe(3+) IONS import ATP- 85.0 0.42 1.4E-05 47.7 2.8 31 192-222 32-63 (359)
405 2qmh_A HPR kinase/phosphorylas 85.0 0.51 1.7E-05 43.8 3.1 22 191-212 35-56 (205)
406 3ake_A Cytidylate kinase; CMP 85.0 0.56 1.9E-05 40.9 3.3 21 192-212 4-24 (208)
407 2ihy_A ABC transporter, ATP-bi 84.9 0.46 1.6E-05 45.3 2.9 31 192-222 49-80 (279)
408 1f6b_A SAR1; gtpases, N-termin 84.9 0.41 1.4E-05 42.0 2.4 21 191-211 26-46 (198)
409 1tf7_A KAIC; homohexamer, hexa 84.8 0.57 1.9E-05 48.3 3.8 20 192-211 41-60 (525)
410 3rlf_A Maltose/maltodextrin im 84.8 0.48 1.6E-05 47.7 3.1 31 192-222 31-62 (381)
411 2gza_A Type IV secretion syste 84.7 0.43 1.5E-05 47.0 2.7 32 192-223 177-209 (361)
412 2hup_A RAS-related protein RAB 84.7 0.54 1.8E-05 41.2 3.1 22 191-212 30-51 (201)
413 3llu_A RAS-related GTP-binding 84.6 0.53 1.8E-05 41.0 2.9 21 190-210 20-40 (196)
414 3cpj_B GTP-binding protein YPT 84.6 0.62 2.1E-05 41.4 3.5 22 191-212 14-35 (223)
415 3b6e_A Interferon-induced heli 84.6 0.86 2.9E-05 39.6 4.3 24 192-215 50-73 (216)
416 1z47_A CYSA, putative ABC-tran 84.6 0.51 1.7E-05 47.0 3.1 31 192-222 43-74 (355)
417 2j0v_A RAC-like GTP-binding pr 84.5 0.56 1.9E-05 41.0 3.1 22 191-212 10-31 (212)
418 4tmk_A Protein (thymidylate ki 84.5 0.85 2.9E-05 41.8 4.4 28 192-219 5-32 (213)
419 2yyz_A Sugar ABC transporter, 84.5 0.51 1.7E-05 47.0 3.1 31 192-222 31-62 (359)
420 3t34_A Dynamin-related protein 84.5 0.54 1.8E-05 45.8 3.2 22 191-212 35-56 (360)
421 3aez_A Pantothenate kinase; tr 84.5 0.52 1.8E-05 45.7 3.1 24 192-215 92-115 (312)
422 3a1s_A Iron(II) transport prot 84.5 0.61 2.1E-05 43.6 3.5 21 191-211 6-26 (258)
423 1g29_1 MALK, maltose transport 84.3 0.52 1.8E-05 47.0 3.1 31 192-222 31-62 (372)
424 3d31_A Sulfate/molybdate ABC t 84.3 0.45 1.5E-05 47.1 2.6 31 192-222 28-59 (348)
425 3pxi_A Negative regulator of g 84.2 0.78 2.7E-05 49.3 4.7 33 192-224 523-555 (758)
426 2it1_A 362AA long hypothetical 84.2 0.53 1.8E-05 46.9 3.1 31 192-222 31-62 (362)
427 3k53_A Ferrous iron transport 84.2 0.54 1.8E-05 43.8 3.0 21 191-211 4-24 (271)
428 2p67_A LAO/AO transport system 84.1 0.89 3E-05 44.2 4.6 28 191-218 57-84 (341)
429 1v43_A Sugar-binding transport 84.0 0.54 1.9E-05 47.0 3.1 31 192-222 39-70 (372)
430 2npi_A Protein CLP1; CLP1-PCF1 84.0 0.43 1.5E-05 48.9 2.4 33 191-223 139-174 (460)
431 3e2i_A Thymidine kinase; Zn-bi 83.9 0.89 3E-05 42.6 4.3 29 193-221 31-59 (219)
432 2rcn_A Probable GTPase ENGC; Y 83.9 0.69 2.3E-05 46.1 3.7 22 192-213 217-238 (358)
433 2h92_A Cytidylate kinase; ross 83.8 1 3.5E-05 39.9 4.6 29 192-223 5-33 (219)
434 2x77_A ADP-ribosylation factor 83.8 0.41 1.4E-05 41.0 1.9 21 191-211 23-43 (189)
435 2obl_A ESCN; ATPase, hydrolase 83.8 0.6 2.1E-05 46.0 3.3 26 192-217 73-98 (347)
436 2yv5_A YJEQ protein; hydrolase 83.6 0.6 2.1E-05 44.7 3.1 30 192-222 167-197 (302)
437 2ffh_A Protein (FFH); SRP54, s 83.6 0.91 3.1E-05 46.2 4.6 33 192-224 100-132 (425)
438 3m6a_A ATP-dependent protease 83.6 0.62 2.1E-05 48.5 3.5 32 192-224 110-141 (543)
439 1u0l_A Probable GTPase ENGC; p 83.5 0.58 2E-05 44.7 3.0 31 192-222 171-202 (301)
440 2pjz_A Hypothetical protein ST 83.5 0.62 2.1E-05 44.1 3.1 31 192-222 32-62 (263)
441 1sky_E F1-ATPase, F1-ATP synth 83.5 0.99 3.4E-05 46.8 4.8 35 192-226 153-188 (473)
442 2oap_1 GSPE-2, type II secreti 83.4 0.46 1.6E-05 49.4 2.4 31 192-222 262-293 (511)
443 2ius_A DNA translocase FTSK; n 83.3 1.7 5.7E-05 45.4 6.5 68 191-260 168-241 (512)
444 3nbx_X ATPase RAVA; AAA+ ATPas 83.3 0.43 1.5E-05 49.6 2.1 23 192-214 43-65 (500)
445 3lv8_A DTMP kinase, thymidylat 83.2 1 3.5E-05 42.0 4.5 29 192-220 29-57 (236)
446 3auy_A DNA double-strand break 83.2 0.65 2.2E-05 45.6 3.2 22 192-214 27-48 (371)
447 3b1v_A Ferrous iron uptake tra 83.2 0.69 2.4E-05 43.8 3.3 21 191-211 4-24 (272)
448 3sr0_A Adenylate kinase; phosp 83.1 0.82 2.8E-05 41.6 3.7 29 192-223 2-30 (206)
449 2fz4_A DNA repair protein RAD2 83.0 1 3.4E-05 41.4 4.3 33 192-226 110-142 (237)
450 2bbs_A Cystic fibrosis transme 82.9 0.56 1.9E-05 45.1 2.6 36 192-227 66-107 (290)
451 1odf_A YGR205W, hypothetical 3 82.9 1.6 5.3E-05 41.9 5.7 25 192-216 33-57 (290)
452 3zvl_A Bifunctional polynucleo 82.9 0.48 1.6E-05 47.6 2.2 30 192-224 260-289 (416)
453 3gd7_A Fusion complex of cysti 82.8 0.58 2E-05 47.1 2.8 31 192-222 49-79 (390)
454 2yc2_C IFT27, small RAB-relate 82.8 0.31 1.1E-05 42.0 0.7 23 191-213 21-43 (208)
455 1uj2_A Uridine-cytidine kinase 82.7 0.76 2.6E-05 42.3 3.3 21 192-212 24-44 (252)
456 1knx_A Probable HPR(Ser) kinas 82.6 0.82 2.8E-05 44.9 3.6 34 191-224 148-184 (312)
457 1r6b_X CLPA protein; AAA+, N-t 82.5 1.6 5.4E-05 46.7 6.2 25 191-215 208-232 (758)
458 1p5z_B DCK, deoxycytidine kina 82.4 0.36 1.2E-05 44.7 1.0 33 191-225 25-57 (263)
459 1zcb_A G alpha I/13; GTP-bindi 82.4 0.92 3.1E-05 45.0 4.0 28 191-219 34-61 (362)
460 1svm_A Large T antigen; AAA+ f 82.3 0.76 2.6E-05 46.0 3.3 30 191-222 170-199 (377)
461 1oxx_K GLCV, glucose, ABC tran 82.2 0.48 1.7E-05 46.9 1.9 31 192-222 33-64 (353)
462 2pt7_A CAG-ALFA; ATPase, prote 82.1 0.5 1.7E-05 46.1 1.9 32 192-223 173-205 (330)
463 3foz_A TRNA delta(2)-isopenten 82.1 1.7 5.7E-05 42.8 5.6 37 191-230 11-47 (316)
464 3pxi_A Negative regulator of g 81.9 1.1 3.8E-05 48.1 4.7 22 192-213 203-224 (758)
465 3gj0_A GTP-binding nuclear pro 81.9 0.43 1.5E-05 42.3 1.2 23 190-212 15-37 (221)
466 2qnr_A Septin-2, protein NEDD5 81.8 0.64 2.2E-05 44.6 2.5 21 192-212 20-40 (301)
467 3t5d_A Septin-7; GTP-binding p 81.8 0.7 2.4E-05 43.1 2.7 21 191-211 9-29 (274)
468 1q3t_A Cytidylate kinase; nucl 81.8 0.86 3E-05 41.4 3.3 22 191-212 17-38 (236)
469 3i8s_A Ferrous iron transport 81.6 0.8 2.7E-05 43.0 3.1 21 191-211 4-24 (274)
470 3v9p_A DTMP kinase, thymidylat 81.6 0.92 3.1E-05 42.1 3.5 26 192-217 27-52 (227)
471 3tmk_A Thymidylate kinase; pho 81.5 1.1 3.8E-05 41.2 4.0 34 192-226 7-40 (216)
472 2gno_A DNA polymerase III, gam 81.5 1.1 3.8E-05 43.2 4.1 22 191-212 19-40 (305)
473 2dpy_A FLII, flagellum-specifi 81.3 0.82 2.8E-05 46.5 3.3 25 192-216 159-183 (438)
474 2x2e_A Dynamin-1; nitration, h 81.2 0.88 3E-05 44.3 3.3 22 191-212 32-53 (353)
475 4djt_A GTP-binding nuclear pro 81.2 0.75 2.6E-05 40.4 2.6 21 191-211 12-32 (218)
476 3qkt_A DNA double-strand break 81.1 0.99 3.4E-05 43.7 3.6 22 193-215 26-47 (339)
477 1mky_A Probable GTP-binding pr 81.0 0.88 3E-05 45.7 3.3 22 191-212 181-202 (439)
478 1wf3_A GTP-binding protein; GT 80.9 0.97 3.3E-05 43.3 3.4 22 191-212 8-29 (301)
479 1qvr_A CLPB protein; coiled co 80.8 0.97 3.3E-05 49.4 3.8 33 192-224 590-622 (854)
480 1ega_A Protein (GTP-binding pr 80.8 0.97 3.3E-05 43.2 3.4 22 191-212 9-30 (301)
481 3bs4_A Uncharacterized protein 80.8 1.4 4.9E-05 41.9 4.5 35 192-226 23-57 (260)
482 1tq4_A IIGP1, interferon-induc 80.7 1.2 4E-05 45.2 4.1 21 192-212 71-91 (413)
483 3r7w_A Gtpase1, GTP-binding pr 80.7 0.95 3.2E-05 43.2 3.3 23 191-213 4-26 (307)
484 3tui_C Methionine import ATP-b 80.6 0.88 3E-05 45.5 3.1 31 192-222 56-87 (366)
485 3nh6_A ATP-binding cassette SU 80.2 0.8 2.7E-05 44.5 2.6 31 192-222 82-113 (306)
486 3iev_A GTP-binding protein ERA 80.2 0.96 3.3E-05 43.3 3.1 22 191-212 11-32 (308)
487 2c61_A A-type ATP synthase non 80.0 0.74 2.5E-05 47.6 2.4 34 192-225 154-191 (469)
488 2zpa_A Uncharacterized protein 80.0 0.75 2.6E-05 49.6 2.5 36 192-229 194-229 (671)
489 3k1j_A LON protease, ATP-depen 79.7 0.98 3.4E-05 47.4 3.3 23 192-214 62-84 (604)
490 1p6x_A Thymidine kinase; P-loo 79.7 1.1 3.6E-05 44.4 3.3 36 191-226 8-44 (334)
491 4hlc_A DTMP kinase, thymidylat 79.2 1.8 6.3E-05 39.1 4.5 32 192-224 4-35 (205)
492 3exa_A TRNA delta(2)-isopenten 79.2 2.1 7.3E-05 42.2 5.3 34 192-228 5-38 (322)
493 3th5_A RAS-related C3 botulinu 80.2 0.4 1.4E-05 41.8 0.0 22 191-212 31-52 (204)
494 3kjh_A CO dehydrogenase/acetyl 78.9 1.5 5.2E-05 39.0 3.8 32 193-224 3-34 (254)
495 3l0o_A Transcription terminati 78.8 2 6.7E-05 44.0 5.0 49 165-224 161-211 (427)
496 3ld9_A DTMP kinase, thymidylat 78.8 1.1 3.6E-05 41.7 2.9 36 191-226 22-61 (223)
497 1g41_A Heat shock protein HSLU 78.8 1.2 4.1E-05 45.7 3.5 20 191-210 51-70 (444)
498 2v6i_A RNA helicase; membrane, 78.8 1 3.6E-05 45.0 3.0 35 192-226 4-40 (431)
499 1osn_A Thymidine kinase, VZV-T 78.7 0.69 2.4E-05 45.9 1.6 38 191-229 13-51 (341)
500 2qag_B Septin-6, protein NEDD5 78.7 1 3.4E-05 46.1 2.9 21 193-213 45-65 (427)
No 1
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.56 E-value=0.003 Score=56.38 Aligned_cols=36 Identities=25% Similarity=0.349 Sum_probs=30.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
..++|+|++|||||+++.++...+...++-|+++..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~ 88 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL 88 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 359999999999999999998888888887777754
No 2
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.46 E-value=0.0014 Score=57.25 Aligned_cols=34 Identities=15% Similarity=0.145 Sum_probs=28.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH-hCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR-EEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL~I 224 (404)
..++|+|++|||||+++..+..... .+|+.|+++
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~ 73 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF 73 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 3589999999999999999888776 678766664
No 3
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.17 E-value=0.0046 Score=55.48 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=27.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
++++|++|+|||++|.++++.+..+|.=|+.+
T Consensus 6 ~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 6 TVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 79999999999999999999888777755554
No 4
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.04 E-value=0.0057 Score=54.18 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|++|||||+++..+...+..+|.-|+++
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~ 88 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIV 88 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 589999999999999888888777776655554
No 5
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.98 E-value=0.0087 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.177 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE 216 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ 216 (404)
.++|+|++|||||+++.++......
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999888776654
No 6
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.87 E-value=0.014 Score=56.09 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~IP 225 (404)
.++|+|++|||||+++..+....... +|-++++.
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 48999999999999998888877666 68888875
No 7
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.83 E-value=0.0071 Score=56.54 Aligned_cols=33 Identities=21% Similarity=0.251 Sum_probs=29.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++++|+.|+|||++|.|+++.+...|.-|+++
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 389999999999999999999998888777766
No 8
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.80 E-value=0.0067 Score=58.03 Aligned_cols=35 Identities=26% Similarity=0.397 Sum_probs=30.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
.++|+|++|||||+++..+......+++-++|++.
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 48999999999999998888888777888888753
No 9
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.78 E-value=0.0086 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.113 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE 216 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ 216 (404)
.++|+|++|||||+++..+......
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4899999999999999888776654
No 10
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.77 E-value=0.0083 Score=53.54 Aligned_cols=34 Identities=24% Similarity=0.199 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|+|+.||||||++..+...-...|++++++-
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d 60 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILD 60 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEec
Confidence 4899999999999999888776667899866653
No 11
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.74 E-value=0.01 Score=56.76 Aligned_cols=34 Identities=18% Similarity=0.191 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC------CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE------GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n------gWIVL~IP 225 (404)
.++|+|++|||||+++..+....... ++.++++.
T Consensus 46 ~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~ 85 (387)
T 2v1u_A 46 NALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN 85 (387)
T ss_dssp CEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE
Confidence 48999999999999998888776554 78888874
No 12
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.73 E-value=0.015 Score=56.04 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC--------CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE--------GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n--------gWIVL~IP 225 (404)
.++|+|++|||||+++..+....... +|-++++.
T Consensus 47 ~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 47 SNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 49999999999999998888776554 88888775
No 13
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.73 E-value=0.0071 Score=54.58 Aligned_cols=33 Identities=27% Similarity=0.295 Sum_probs=28.0
Q ss_pred EEEECCCCCcHHHHHHHHHHH-HHhCCeEEEEec
Q 045329 193 IVLDGPLCCGKSITLAMLVHW-AREEGWLVLYVP 225 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~-A~~ngWIVL~IP 225 (404)
++|.|++|+|||+++.|++.. |...|+-|+|+.
T Consensus 33 ~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s 66 (251)
T 2zts_A 33 VLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT 66 (251)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence 899999999999999997765 566688888873
No 14
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.011 Score=53.34 Aligned_cols=34 Identities=24% Similarity=0.255 Sum_probs=28.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|++|+|||+++.|++..+..+|.=|+|+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3899999999999999999887777666666663
No 15
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.36 E-value=0.0094 Score=51.62 Aligned_cols=35 Identities=31% Similarity=0.211 Sum_probs=29.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
.++|+|+.|||||+++.-+...+..+|.=++|++.
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 48999999999999999988888777866666653
No 16
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.34 E-value=0.011 Score=56.44 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC---CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE---GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n---gWIVL~IP 225 (404)
.++|+|++|||||+++..+....... ++-++++.
T Consensus 47 ~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 47 NIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 48999999999999999888766554 77777775
No 17
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.31 E-value=0.015 Score=49.53 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
++|+|++|||||++...+...+...+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~ 52 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQ 52 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTT
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccC
Confidence 89999999999977766555544333
No 18
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.30 E-value=0.012 Score=52.14 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|.|++|||||+++.++...+..++.=|+|+
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~ 57 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV 57 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 389999999999999999996655444334443
No 19
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.11 E-value=0.018 Score=55.63 Aligned_cols=34 Identities=29% Similarity=0.339 Sum_probs=28.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH-hCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR-EEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL~I 224 (404)
..++|+|++|||||.++..+...+. .+|.-|+++
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~ 187 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLL 187 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEE
Confidence 3599999999999999988888887 777766655
No 20
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.09 E-value=0.015 Score=58.11 Aligned_cols=34 Identities=15% Similarity=0.176 Sum_probs=29.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|++|||||+++.|++..+...|--|+||.
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId 96 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID 96 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 3799999999999999999998887777777874
No 21
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.99 E-value=0.015 Score=50.46 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|||||+++.++.......+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~ 66 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccc
Confidence 399999999999999988877654443
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.93 E-value=0.02 Score=48.19 Aligned_cols=29 Identities=31% Similarity=0.389 Sum_probs=24.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|.|++|||||++...+ ...||.++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L----~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL----KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH----HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH----HHCCCcEEEH
Confidence 4899999999999988777 5668888875
No 23
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.88 E-value=0.033 Score=54.05 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=28.3
Q ss_pred eEEE--ECCCCCcHHHHHHHHHHHHHhC------CeEEEEec
Q 045329 192 QIVL--DGPLCCGKSITLAMLVHWAREE------GWLVLYVP 225 (404)
Q Consensus 192 r~vL--~G~rGsGKS~~L~qav~~A~~n------gWIVL~IP 225 (404)
.++| +|++|+|||+++.++....... ++.++++.
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 4788 9999999999999988776553 78888886
No 24
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.88 E-value=0.029 Score=48.87 Aligned_cols=34 Identities=24% Similarity=0.382 Sum_probs=28.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
++|+|..||||||+...+..+-...|+-|+....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7999999999999999998887778998886644
No 25
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.85 E-value=0.026 Score=54.62 Aligned_cols=33 Identities=9% Similarity=0.024 Sum_probs=29.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++|.|++|+|||+++.|+...+..+|.-|+||.
T Consensus 71 ~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 71 VLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 899999999999999999988877887777763
No 26
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.044 Score=53.88 Aligned_cols=56 Identities=9% Similarity=-0.097 Sum_probs=37.8
Q ss_pred ch-hHHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHHHHhC-------CeEEEEecC
Q 045329 163 RQ-SFLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREE-------GWLVLYVPR 226 (404)
Q Consensus 163 Rk-~tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~A~~n-------gWIVL~IP~ 226 (404)
|+ +..+|...|...+... .+ +.++|+|++|||||++...++.-.... +..++||..
T Consensus 25 Re~E~~~i~~~L~~~i~~~-----~~---~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc 88 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSS-----QN---KLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA 88 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTT-----CC---CEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET
T ss_pred HHHHHHHHHHHHHHHhcCC-----CC---CeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec
Confidence 44 5566666777665321 22 348999999999999998887755432 567777753
No 27
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.73 E-value=0.022 Score=56.59 Aligned_cols=34 Identities=21% Similarity=0.128 Sum_probs=28.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC--CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE--GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n--gWIVL~IP 225 (404)
.+.|+|++|||||++++|+++-+.++ |-.|+||.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId 65 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD 65 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 58999999999999999999988765 56677764
No 28
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.73 E-value=0.019 Score=60.81 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=27.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.+|.||+|||||+++++++.+...+|+=||-+
T Consensus 208 ~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~ 239 (646)
T 4b3f_X 208 AIIHGPPGTGKTTTVVEIILQAVKQGLKVLCC 239 (646)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 79999999999999999999988887655544
No 29
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.63 E-value=0.023 Score=56.18 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=30.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
-++|+|++|||||+++.|++..+..+|--|+||.-
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~ 97 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDA 97 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 38999999999999999999988888777777754
No 30
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.61 E-value=0.025 Score=51.08 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-+.|.|+.||||||+|.++.....
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~ 55 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGA 55 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 389999999999999999986554
No 31
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.59 E-value=0.03 Score=47.85 Aligned_cols=31 Identities=19% Similarity=0.118 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|.|.+|||||++...+... ..||.++..
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~--~~~~~~i~~ 34 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAK--NPGFYNINR 34 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH--STTEEEECH
T ss_pred EEEEecCCCCCHHHHHHHHHhh--cCCcEEecH
Confidence 4899999999999998777652 568887764
No 32
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.53 E-value=0.026 Score=57.81 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=22.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++++||||+|||||++. .+++ .+-|+-++.|.
T Consensus 216 rGvLLyGPPGTGKTllA-kAiA--~e~~~~f~~v~ 247 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLA-RACA--AQTNATFLKLA 247 (434)
T ss_dssp CEEEEESCTTSSHHHHH-HHHH--HHHTCEEEEEE
T ss_pred CeeEEECcCCCCHHHHH-HHHH--HHhCCCEEEEe
Confidence 57999999999999774 3433 33455555553
No 33
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.50 E-value=0.025 Score=54.85 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=24.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
+.++|+|++|||||++...+...+....++.+..+
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~ 80 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS 80 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhH
Confidence 46999999999999988766665533344444443
No 34
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.50 E-value=0.032 Score=48.17 Aligned_cols=34 Identities=21% Similarity=0.133 Sum_probs=27.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|.|.+||||||+...+...-...|.-+.++|
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 4899999999999999888876555676566665
No 35
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.47 E-value=0.038 Score=51.12 Aligned_cols=34 Identities=12% Similarity=0.063 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|+|++|||||+++..+.......+.-+++|+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~ 64 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSSRWQGPFISLN 64 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEE
T ss_pred CEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEe
Confidence 3899999999999766555555444444444443
No 36
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.46 E-value=0.029 Score=52.99 Aligned_cols=33 Identities=18% Similarity=-0.013 Sum_probs=27.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~I 224 (404)
-++|.|++|+|||+++.++......+ |+=|+++
T Consensus 37 ~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 37 VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 38999999999999999998876654 8666665
No 37
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=94.42 E-value=0.025 Score=53.31 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|+|++|+|||+++.++...+ +|+.+..
T Consensus 33 ~v~i~G~~G~GKT~Ll~~~~~~~---~~~~~~~ 62 (350)
T 2qen_A 33 LTLLLGIRRVGKSSLLRAFLNER---PGILIDC 62 (350)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SEEEEEH
T ss_pred eEEEECCCcCCHHHHHHHHHHHc---CcEEEEe
Confidence 48999999999999999987654 5555443
No 38
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=94.40 E-value=0.021 Score=50.01 Aligned_cols=27 Identities=19% Similarity=0.188 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|+|||+++.++.......+
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~~~~ 73 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLNCET 73 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 489999999999999988876655444
No 39
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.40 E-value=0.03 Score=49.52 Aligned_cols=31 Identities=26% Similarity=0.224 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|++|||||+++.|+.. ..|.=|+||.
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 489999999999999999987 4455566653
No 40
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.40 E-value=0.037 Score=49.23 Aligned_cols=29 Identities=17% Similarity=0.115 Sum_probs=23.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
-++|.|+.||||||++..+...- |++++.
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~ 59 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---GLEFAE 59 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---CCeEEc
Confidence 48999999999999988775433 888775
No 41
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=94.39 E-value=0.034 Score=51.96 Aligned_cols=34 Identities=24% Similarity=0.174 Sum_probs=29.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|.+|||||++...+..+....||.++++.
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~ 39 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG 39 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEEC
Confidence 4899999999999999988887667899888663
No 42
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.27 E-value=0.038 Score=47.34 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|+|+.||||||++..+.. .-|+.++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~---~l~~~~id 34 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQ---QLNMEFYD 34 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHH---HTTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHH---HhCCCEEe
Confidence 489999999999999876633 34665543
No 43
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.24 E-value=0.043 Score=47.47 Aligned_cols=34 Identities=21% Similarity=0.362 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|+|..||||||+...+...-...|+-|+...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3799999999999999888877666788877653
No 44
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=94.23 E-value=0.037 Score=50.84 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
+.++|+|++|||||+++..+.... ..+.+.+
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~-~~~~i~~ 80 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITA 80 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh-CCCEEEe
Confidence 359999999999999887665544 2444433
No 45
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.22 E-value=0.045 Score=47.16 Aligned_cols=30 Identities=27% Similarity=0.068 Sum_probs=24.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|+.|||||+++..+... -|++++..
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~---~g~~~i~~ 39 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQ---LHAAFLDG 39 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH---HTCEEEEG
T ss_pred EEEEEcCCCCCHHHHHHHHHHh---hCcEEEeC
Confidence 4899999999999998876543 28887764
No 46
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=94.10 E-value=0.037 Score=56.61 Aligned_cols=31 Identities=19% Similarity=0.295 Sum_probs=21.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
++++|+||+|||||++...+ +... |+=++.|
T Consensus 207 rGiLL~GPPGtGKT~lakAi-A~~~--~~~~~~v 237 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAV-ANST--KAAFIRV 237 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHH-HHHH--TCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHH-HHHh--CCCeEEE
Confidence 57999999999999876544 3333 4444444
No 47
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=94.08 E-value=0.04 Score=54.73 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=30.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
-++|+|++|||||++..|++..+..+|--|+||.-
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 38999999999999999999988888877887754
No 48
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.03 E-value=0.056 Score=49.23 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=17.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.++|+|++|||||+++..+..
T Consensus 40 ~~vll~G~~GtGKT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999987765544
No 49
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.91 E-value=0.034 Score=56.37 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=28.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC--CeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE--GWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n--gWIVL~IP~ 226 (404)
+.++|+|++|||||+++..+......+ +.-|+|+..
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 349999999999999888777766555 777777753
No 50
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.91 E-value=0.088 Score=50.62 Aligned_cols=31 Identities=10% Similarity=0.189 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL 222 (404)
.++|+|++|||||+++..+......+ .|+.+
T Consensus 72 ~vLl~GppGtGKT~la~~la~~l~~~~~~~~~ 103 (368)
T 3uk6_A 72 AVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI 103 (368)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCcccc
Confidence 59999999999999877766665433 44443
No 51
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.85 E-value=0.041 Score=55.97 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++++|+||+|||||++...+ |.+-|+=++.|.
T Consensus 183 rGvLL~GPPGTGKTllAkAi---A~e~~~~f~~v~ 214 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAV---AHHTDCKFIRVS 214 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHH---HHHHTCEEEEEE
T ss_pred CceEEeCCCCCCHHHHHHHH---HHhhCCCceEEE
Confidence 57999999999999875433 333355555553
No 52
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.83 E-value=0.056 Score=50.21 Aligned_cols=31 Identities=32% Similarity=0.395 Sum_probs=22.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+.++|+|++|||||+++..+ |..-+.-++++
T Consensus 52 ~~~ll~G~~GtGKT~la~~l---a~~~~~~~~~v 82 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAV---ATETNATFIRV 82 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHH---HHHTTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHH---HHHhCCCEEEE
Confidence 45999999999999887665 33345555554
No 53
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=93.74 E-value=0.048 Score=48.99 Aligned_cols=24 Identities=17% Similarity=0.083 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-++|.|++|||||+++.++...+.
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~ 49 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQ 49 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 389999999999999999887643
No 54
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.72 E-value=0.07 Score=46.00 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC--eEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG--WLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng--WIVL~I 224 (404)
.++|.|.+||||||+...+...--.+| +.++.+
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~ 39 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF 39 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEeh
Confidence 489999999999999888877555555 666654
No 55
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.69 E-value=0.063 Score=46.91 Aligned_cols=29 Identities=24% Similarity=0.301 Sum_probs=22.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
++|.|+.||||||++..+.. ...|.+.+.
T Consensus 5 i~l~G~~GaGKSTl~~~L~~--~~~g~~~i~ 33 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAA--QLDNSAYIE 33 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHH--HSSSEEEEE
T ss_pred EEEECCCCCcHHHHHHHHhc--ccCCeEEEc
Confidence 78999999999999988853 344555543
No 56
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.66 E-value=0.061 Score=48.84 Aligned_cols=33 Identities=24% Similarity=0.237 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++++|+.|+|||++|.++++-+...|.=|+-+
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 489999999999999999999988777655555
No 57
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.66 E-value=0.03 Score=48.77 Aligned_cols=30 Identities=20% Similarity=0.170 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.++|.|++||||||++..+... ...|.|.+
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i 40 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANL-PGVPKVHF 40 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTC-SSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCCeEEE
Confidence 4899999999999999887654 33455444
No 58
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.66 E-value=0.055 Score=50.74 Aligned_cols=28 Identities=14% Similarity=0.252 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW 219 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW 219 (404)
.++|+|++|||||++...+.......++
T Consensus 69 ~vll~G~~GtGKT~la~~la~~l~~~~~ 96 (309)
T 3syl_A 69 HMSFTGNPGTGKTTVALKMAGLLHRLGY 96 (309)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 4999999999999988777766665544
No 59
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.61 E-value=0.081 Score=49.11 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=18.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
..++|+|++|||||++...+...
T Consensus 65 ~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 65 VSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 45999999999999877654443
No 60
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.55 E-value=0.068 Score=46.35 Aligned_cols=33 Identities=18% Similarity=0.160 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|..||||||++..+..+-...|+-++.+
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 489999999999999988877655578655554
No 61
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=93.55 E-value=0.058 Score=50.44 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=22.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
+.++|+|++|||||+++..+.... ..+.+.+
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~-~~~~i~~ 104 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA-RVPFITA 104 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT-TCCEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHc-CCCEEEe
Confidence 359999999999999887665544 3444433
No 62
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=93.55 E-value=0.068 Score=46.66 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.-++|.|..|||||++...+..+....|+-|.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3489999999999999999888877666544333
No 63
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.53 E-value=0.051 Score=51.19 Aligned_cols=24 Identities=17% Similarity=0.082 Sum_probs=21.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-++|+|++|+|||+++.++...+.
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHhcC
Confidence 489999999999999999887653
No 64
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.52 E-value=0.055 Score=55.65 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=20.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
++++|+|++|||||++.. +++. +-|+-++.|
T Consensus 217 rGvLLyGPPGTGKTlLAk-AiA~--e~~~~fi~v 247 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAK-AVAN--QTSATFLRI 247 (437)
T ss_dssp SEEEEESSTTTTHHHHHH-HHHH--HHTCEEEEE
T ss_pred CCCceECCCCchHHHHHH-HHHH--HhCCCEEEE
Confidence 579999999999998644 3333 334444444
No 65
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.48 E-value=0.062 Score=54.80 Aligned_cols=34 Identities=9% Similarity=-0.002 Sum_probs=30.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|.+|+|||++++|+...+..+|+=|+|+.
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 3899999999999999999998887898888884
No 66
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=93.48 E-value=0.043 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
++.|.|+.||||||+|.-+.-.-
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999998777654
No 67
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.44 E-value=0.055 Score=54.03 Aligned_cols=34 Identities=21% Similarity=0.277 Sum_probs=29.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
++|+|++|||||++++|++..+..+|--|+||.-
T Consensus 77 i~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~ 110 (366)
T 1xp8_A 77 TEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 110 (366)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEEC
Confidence 7999999999999999999988888777788754
No 68
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.41 E-value=0.06 Score=52.59 Aligned_cols=39 Identities=21% Similarity=0.343 Sum_probs=32.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCcccccc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWTH 232 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~~wvn 232 (404)
.+.|.|+.||||||+|.-+.-.- .|-|+.++|.-..+..
T Consensus 128 ~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~ 166 (305)
T 2v9p_A 128 CLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWL 166 (305)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGG
T ss_pred EEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCcccccc
Confidence 58999999999999998888766 8999999887544433
No 69
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.32 E-value=0.058 Score=47.65 Aligned_cols=32 Identities=34% Similarity=0.432 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a 227 (404)
++.|+|..||||||++..+.. .|+.+++....
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~----~g~~~i~~d~~ 34 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE----LGAYVLDADKL 34 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH----TTCEEEEHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH----CCCEEEEccHH
Confidence 489999999999999877755 38888887553
No 70
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.31 E-value=0.071 Score=52.80 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=30.0
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++|.|++|+|||+++.|+...+..+|+-|+|+.
T Consensus 49 iiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS 81 (338)
T 4a1f_A 49 VIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS 81 (338)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 899999999999999999988877898888874
No 71
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.29 E-value=0.062 Score=51.62 Aligned_cols=31 Identities=26% Similarity=0.216 Sum_probs=21.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+.++|+|++|||||+++..+... .+.-+++|
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~---~~~~~~~v 82 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATE---ANSTFFSV 82 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHH---HTCEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHH---HCCCEEEE
Confidence 46999999999999877655333 34444444
No 72
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.28 E-value=0.053 Score=52.47 Aligned_cols=34 Identities=15% Similarity=0.072 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC------CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE------GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n------gWIVL~IP 225 (404)
-++|+|++|||||+++.|+...+... |.-|+||.
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 38999999999999999998876544 55666663
No 73
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.26 E-value=0.054 Score=56.09 Aligned_cols=31 Identities=29% Similarity=0.293 Sum_probs=21.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
++++|+|++|||||++. .+++. +-|+-++.|
T Consensus 244 rGILLyGPPGTGKTlLA-kAiA~--e~~~~fi~v 274 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCA-RAVAN--RTDATFIRV 274 (467)
T ss_dssp SEEEECSCTTSSHHHHH-HHHHH--HHTCEEEEE
T ss_pred CceEeeCCCCCcHHHHH-HHHHh--ccCCCeEEE
Confidence 57999999999998654 44433 335555554
No 74
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.26 E-value=0.086 Score=53.40 Aligned_cols=35 Identities=17% Similarity=0.403 Sum_probs=29.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe--EEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW--LVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW--IVL~IP~ 226 (404)
-++|.|++|||||+++.+++.+....|. |++.-|.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T 83 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGETGIILAAPT 83 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCc
Confidence 4899999999999999999999888775 5555454
No 75
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.25 E-value=0.095 Score=48.81 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|||||++...+.......+
T Consensus 40 ~~ll~G~~G~GKt~la~~l~~~l~~~~ 66 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAIALARDLFGEN 66 (319)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHHHTTC
T ss_pred eEEEECcCCcCHHHHHHHHHHHhcCCc
Confidence 399999999999998877776654444
No 76
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=93.19 E-value=0.061 Score=46.61 Aligned_cols=30 Identities=20% Similarity=0.137 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+..+ -||.++..
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~---l~~~~i~~ 36 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATG---LRLPLLSK 36 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH---HTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---cCCeEecH
Confidence 4899999999999988777553 27877764
No 77
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=93.19 E-value=0.069 Score=47.26 Aligned_cols=30 Identities=23% Similarity=0.200 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|..||||||+...+...- ||.++..
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l---g~~~i~~ 49 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC---GYPFIEG 49 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH---TCCEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCEEEeC
Confidence 49999999999999887665432 7777653
No 78
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.17 E-value=0.064 Score=51.18 Aligned_cols=19 Identities=26% Similarity=0.565 Sum_probs=17.0
Q ss_pred eEEEECCCCCcHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAML 210 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qa 210 (404)
.++|+|++|||||+++.++
T Consensus 57 ~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CEEEECSTTSSHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHH
Confidence 4899999999999988776
No 79
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.16 E-value=0.054 Score=55.56 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=22.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++++||||+|||||++...+.. +-|+=+++|.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~---e~~~~~~~v~ 247 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAA---TIGANFIFSP 247 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH---HHTCEEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHH---HhCCCEEEEe
Confidence 5799999999999987554433 3355555553
No 80
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.15 E-value=0.055 Score=47.48 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+.|.|+.||||||++..+...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3899999999999999887765
No 81
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=93.11 E-value=0.064 Score=47.67 Aligned_cols=24 Identities=17% Similarity=0.104 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-+.|.|+.|||||+++.++.....
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 489999999999999999887543
No 82
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.07 E-value=0.094 Score=49.43 Aligned_cols=32 Identities=19% Similarity=0.252 Sum_probs=27.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.++++.|+.|||||++.+++.+.+.++|.=|+
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 46999999999999999999999888886443
No 83
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.05 E-value=0.067 Score=47.76 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=23.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+++|+|++||||||+...+. ..-|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~---~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIV---EKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHH---HHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHH---HHhCCcEEeH
Confidence 48999999999999887764 3458877766
No 84
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.03 E-value=0.097 Score=51.61 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=25.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
+.++|+|++|||||++...+ |...|+-+++|..
T Consensus 149 ~~vLL~GppGtGKT~la~ai---a~~~~~~~~~v~~ 181 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAV---AAESNATFFNISA 181 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHH---HHHTTCEEEEECS
T ss_pred ceEEEECCCCCCHHHHHHHH---HHhhcCcEEEeeH
Confidence 45999999999999877655 5556777777654
No 85
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=93.02 E-value=0.07 Score=50.02 Aligned_cols=26 Identities=27% Similarity=0.157 Sum_probs=21.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
-++|.|+.|||||+++.|+...+. .|
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~-~g 57 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA-GG 57 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH-TC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh-cC
Confidence 389999999999999999987543 44
No 86
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.02 E-value=0.077 Score=48.87 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++++|+-|+|||+.|.|+++.....|-=|+++-
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 4899999999999999999999888877777764
No 87
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=92.97 E-value=0.086 Score=49.30 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=22.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|+|++|||||+++..+... .+.-++++.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~---~~~~~~~i~ 86 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE---CSATFLNIS 86 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH---TTCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHHHHH---hCCCeEEee
Confidence 45999999999999987655433 344444443
No 88
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=92.93 E-value=0.072 Score=46.69 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|.|+.||||||++..+...
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhh
Confidence 4899999999999999888764
No 89
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.90 E-value=0.087 Score=45.42 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~ 70 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTT 70 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 90
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=92.90 E-value=0.077 Score=47.24 Aligned_cols=30 Identities=20% Similarity=0.177 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+++|+|++||||||+...+.. .-|+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~---~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE---KYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH---HhCCcEeeH
Confidence 489999999999998877643 237777755
No 91
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=92.72 E-value=0.065 Score=51.09 Aligned_cols=22 Identities=18% Similarity=0.130 Sum_probs=17.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..++|+|++|||||++...+..
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~ 58 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFR 58 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999986554433
No 92
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=92.69 E-value=0.1 Score=51.76 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=30.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEEecCccccc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVLYVPRGREWT 231 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~IP~a~~wv 231 (404)
-++|.|+.||||||+|.-++.+-... +-.|+.+-+...+.
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~ 165 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFV 165 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhh
Confidence 48999999999999999888776543 66777776655543
No 93
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=92.68 E-value=0.094 Score=50.37 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHHHHhCC--eEEEE
Q 045329 165 SFLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWAREEG--WLVLY 223 (404)
Q Consensus 165 ~tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~A~~ng--WIVL~ 223 (404)
...++.+.++.+.. .+ ..++|+|++|||||++...+.......+ ++.++
T Consensus 10 ~~~~~~~~~~~~a~-------~~---~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 10 AMQHLLNEIAMVAP-------SD---ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp HHHHHHHHHHHHCS-------TT---SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred HHHHHHHHHHHHhC-------CC---CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 34556666665421 11 2389999999999977655555443344 44444
No 94
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=92.68 E-value=0.077 Score=48.77 Aligned_cols=23 Identities=22% Similarity=0.351 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
+.++|+|++|||||+++..+...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45999999999999887655443
No 95
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.62 E-value=0.075 Score=45.01 Aligned_cols=30 Identities=33% Similarity=0.473 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+... -||.++..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~---l~~~~i~~ 32 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE---LKYPIIKG 32 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH---HCCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeeecC
Confidence 3899999999999988776432 25544433
No 96
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.59 E-value=0.11 Score=49.92 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=21.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|||||+++..+.......+
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 389999999999999887766654333
No 97
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=92.56 E-value=0.11 Score=45.48 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=24.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHh-CCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWARE-EGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL~IP 225 (404)
..++|+|.+|||||++...+. .. .||.++..-
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La---~~l~g~~~id~d 43 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIA---AELDGFQHLEVG 43 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHH---HHSTTEEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHH---HhcCCCEEeeHH
Confidence 459999999999999886654 34 588887753
No 98
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.54 E-value=0.087 Score=51.54 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=25.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh------CCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE------EGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~------ngWIVL~I 224 (404)
-++|+|++|||||+++.|+...|.. .|--|+||
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi 162 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFI 162 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEE
Confidence 4799999999999999999887644 34455555
No 99
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.53 E-value=0.1 Score=53.78 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=25.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
+.++|+|++|||||+++..+. .+-||-++++..
T Consensus 78 ~~lLL~GppGtGKTtla~~la---~~l~~~~i~in~ 110 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAAHLVA---QELGYDILEQNA 110 (516)
T ss_dssp SEEEEECSTTSSHHHHHHHHH---HHTTCEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHH---HHcCCCEEEEeC
Confidence 459999999999999876543 334888888854
No 100
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=92.51 E-value=0.065 Score=54.89 Aligned_cols=34 Identities=12% Similarity=-0.178 Sum_probs=29.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~IP 225 (404)
-++|.|++|+|||++++|+...+..+ |+=|+||.
T Consensus 244 l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s 278 (503)
T 1q57_A 244 VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM 278 (503)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE
T ss_pred EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe
Confidence 38999999999999999998887766 88888874
No 101
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.50 E-value=0.11 Score=50.80 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=24.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
+.++|+|++|||||+++..+. .+.++-+++|..
T Consensus 118 ~~vLl~GppGtGKT~la~aia---~~~~~~~~~i~~ 150 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIA---SQSGATFFSISA 150 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHH---HHTTCEEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHH---HHcCCeEEEEeh
Confidence 359999999999999887663 344666666643
No 102
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.47 E-value=0.077 Score=47.00 Aligned_cols=29 Identities=17% Similarity=0.248 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.+.|+|+.||||||+...+.. .|+.++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~----lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD----LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT----TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH----CCCcccch
Confidence 378999999999999887754 47777653
No 103
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.44 E-value=0.13 Score=46.06 Aligned_cols=34 Identities=29% Similarity=0.273 Sum_probs=27.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+.+.|.|..|||||+++..++.+-...|+=|-.|
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~i 38 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 38 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEE
Confidence 3589999999999999999998877777644444
No 104
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=92.42 E-value=0.1 Score=52.92 Aligned_cols=34 Identities=12% Similarity=0.032 Sum_probs=28.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL~IP 225 (404)
-++|.|++|+|||+++.|+...+.. +|.-|+|+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3899999999999999999887654 677677663
No 105
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=92.42 E-value=0.22 Score=44.27 Aligned_cols=28 Identities=29% Similarity=0.321 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW 219 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW 219 (404)
-+.|+|+.||||||++..+...-...|.
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 4899999999999999888776554443
No 106
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.39 E-value=0.093 Score=45.32 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|.|++|||||++...+. ..-||.++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La---~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALA---KDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHH---HHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHH---HHcCCCEEc
Confidence 48999999999999876653 334665554
No 107
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.38 E-value=0.12 Score=48.41 Aligned_cols=42 Identities=24% Similarity=0.458 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHHH
Q 045329 166 FLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 166 tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++.+..|+..+.. .|. ++.++++|++|||||++...++.+.
T Consensus 41 ~~~f~~~l~~~~~~------iPk-kn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 41 FITFLGALKSFLKG------TPK-KNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp HHHHHHHHHHHHHT------CTT-CSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc------CCc-ccEEEEECCCCCCHHHHHHHHHHHh
Confidence 34455555554321 233 3469999999999999876665553
No 108
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.38 E-value=0.086 Score=46.04 Aligned_cols=30 Identities=37% Similarity=0.582 Sum_probs=24.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..+.|+|..|||||++...+... |+.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC----CCEEEcc
Confidence 35899999999999998776553 8887764
No 109
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.37 E-value=0.13 Score=44.36 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+... -||.++..
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~---l~~~~i~~ 35 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQE---LGFKKLST 35 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH---HTCEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeEecH
Confidence 4899999999999988776543 36665543
No 110
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.35 E-value=0.055 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.193 Sum_probs=28.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
++|.|..||||||++..+..+-...|+-|..+..
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~~~ 36 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF 36 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEEES
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEee
Confidence 7899999999999999988887777877766543
No 111
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.30 E-value=0.079 Score=50.21 Aligned_cols=23 Identities=26% Similarity=0.550 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
++++|+|++|||||+++..+...
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35999999999999998766543
No 112
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.29 E-value=0.067 Score=46.68 Aligned_cols=18 Identities=33% Similarity=0.266 Sum_probs=16.6
Q ss_pred eEEEECCCCCcHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAM 209 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~q 209 (404)
-+.|.|+.||||||++..
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 389999999999999987
No 113
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.27 E-value=0.12 Score=50.57 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A 214 (404)
+.++|+|++|||||++...+...+
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHh
Confidence 359999999999998876555443
No 114
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.23 E-value=0.068 Score=54.18 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=22.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+.++|+|++|||||++...+...+ ++.-+++|
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~--~~~~~~~v 199 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEA--NNSTFFSI 199 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHC--CSSEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc--CCCCEEEE
Confidence 469999999999998876555443 24444444
No 115
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=92.17 E-value=0.11 Score=54.75 Aligned_cols=33 Identities=30% Similarity=0.249 Sum_probs=28.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|+|++|||||+++..++..+..+|.-|+.+
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 489999999999999999999888887655554
No 116
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=92.13 E-value=0.08 Score=47.76 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.+.|.|+.||||||+|.-+..+-..+|
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G 29 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG 29 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC
Confidence 489999999999999999888766777
No 117
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.12 E-value=0.1 Score=43.16 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+++++.|+.|+|||+++.++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999988764
No 118
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=92.10 E-value=0.17 Score=43.63 Aligned_cols=30 Identities=23% Similarity=0.219 Sum_probs=22.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+... -||.++..
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~---~~~~~i~~ 34 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEK---YGYTHLSA 34 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeEEeH
Confidence 4899999999999987765442 37776654
No 119
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.10 E-value=0.082 Score=46.51 Aligned_cols=22 Identities=41% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A 214 (404)
++|.|+.||||||++..+...-
T Consensus 4 i~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhhC
Confidence 7899999999999998887654
No 120
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.08 E-value=0.17 Score=46.78 Aligned_cols=33 Identities=15% Similarity=0.055 Sum_probs=25.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
.+++|.|++||||||+...+...- |+.++.+.+
T Consensus 30 ~~I~l~G~~GsGKsT~a~~L~~~~---g~~~is~~~ 62 (243)
T 3tlx_A 30 GRYIFLGAPGSGKGTQSLNLKKSH---CYCHLSTGD 62 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH---CCEEEEHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh---CCeEEecHH
Confidence 469999999999999887776432 777776543
No 121
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.07 E-value=0.14 Score=47.71 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHh
Q 045329 193 IVLDGPLCCGKSITLAMLVHWARE 216 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ 216 (404)
++|+|++|+|||+++..+......
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~ 68 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLG 68 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHG
T ss_pred EEEECcCCCCHHHHHHHHHHHhcC
Confidence 999999999999988887776543
No 122
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.06 E-value=0.096 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.177 Sum_probs=21.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|||||++...+.......+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~ 75 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTE 75 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCG
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCC
Confidence 499999999999998877776655443
No 123
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=91.99 E-value=0.15 Score=47.40 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=17.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.++|+|++|||||+++..+...
T Consensus 52 ~vll~G~~GtGKT~la~~la~~ 73 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKL 73 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999877655443
No 124
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=91.96 E-value=0.097 Score=46.83 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=20.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|.|+.||||||++..+...-
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 48999999999999999887754
No 125
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.93 E-value=0.089 Score=46.11 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.++|.|+.||||||++..+...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999999887654
No 126
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=91.93 E-value=0.13 Score=45.52 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|++|||||++...+...- ||.++..
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i~~ 56 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFIDL 56 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEEcc
Confidence 59999999999999987765432 6655543
No 127
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=91.89 E-value=0.16 Score=45.24 Aligned_cols=31 Identities=16% Similarity=0.057 Sum_probs=25.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLV 221 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIV 221 (404)
+.++|.|+.|||||+++..++..-...|+-|
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v 37 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRP 37 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCce
Confidence 3589999999999999999998765666443
No 128
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=91.88 E-value=0.087 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=18.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
..++|+|++|||||+++..+...
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 35999999999999887655443
No 129
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=91.88 E-value=0.15 Score=44.10 Aligned_cols=31 Identities=26% Similarity=0.238 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|+|.+|||||++...+... -|+.++...
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~---~~~~~~~~d 43 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASK---SGLKYINVG 43 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH---HCCEEEEHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHH---hCCeEEEHH
Confidence 4899999999999988766543 277766553
No 130
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=91.87 E-value=0.12 Score=43.74 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=15.7
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
.++|+|++|||||++...+.
T Consensus 29 ~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGC
T ss_pred cEEEECCCCccHHHHHHHHH
Confidence 38999999999997654433
No 131
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=91.83 E-value=0.18 Score=49.64 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=50.5
Q ss_pred cchhhhccccCceeEEEchhHHHHHHHHHHhcCCCccCC---CCC---ccceeEEEECCCCCcHHHHHHHHHHHHH---h
Q 045329 146 TGMLGEFKDSMRYALLVRQSFLDIRDNFRRIVDPSLQST---NGP---KIRKQIVLDGPLCCGKSITLAMLVHWAR---E 216 (404)
Q Consensus 146 ~~~~kqfe~f~~p~~LVRk~tleLi~~L~~~~d~~~~st---d~~---~~r~r~vL~G~rGsGKS~~L~qav~~A~---~ 216 (404)
..+.+.-+..+-|.+-...+|-+++..|...++..+... .+. .....++|.|+.|+|||++...++.... .
T Consensus 94 eelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~ 173 (314)
T 1ko7_A 94 EELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKSETALELIKRGHRLVA 173 (314)
T ss_dssp HHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHHHHHHHHHhcCCceec
Confidence 344544555566766666677777777765544211000 000 0114699999999999999999887543 3
Q ss_pred CCeEEEEecCcc
Q 045329 217 EGWLVLYVPRGR 228 (404)
Q Consensus 217 ngWIVL~IP~a~ 228 (404)
.+++.+..-+..
T Consensus 174 dD~~~i~~~~~~ 185 (314)
T 1ko7_A 174 DDNVEIREISKD 185 (314)
T ss_dssp SSEEEEEESSSS
T ss_pred CCeEEEEEcCCC
Confidence 466666655443
No 132
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=91.82 E-value=0.1 Score=45.25 Aligned_cols=31 Identities=29% Similarity=0.144 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|+|.+|||||++...+.. .-||.++..-
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~---~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAK---ALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHH---HHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHH---HcCCCEEeCc
Confidence 489999999999998766644 3377766543
No 133
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=91.76 E-value=0.17 Score=43.49 Aligned_cols=30 Identities=27% Similarity=0.325 Sum_probs=23.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|.+|||||++...+... -||.++..
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~---l~~~~i~~ 37 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRD---FGWVHLSA 37 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeEeeH
Confidence 5899999999999987766543 37777765
No 134
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=91.75 E-value=0.18 Score=42.95 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|..|||||++...+... -||.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~---lg~~~id~ 33 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARA---LGYEFVDT 33 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH---HTCEEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHH---hCCcEEcc
Confidence 4899999999999988766543 26666653
No 135
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.74 E-value=0.33 Score=49.80 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..+++.|..|+||||+++.+..|...+|+=|+-|.
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35899999999999999999999888888776663
No 136
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.71 E-value=0.17 Score=47.82 Aligned_cols=32 Identities=25% Similarity=0.457 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-h-CCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-E-EGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~-ngWIVL~ 223 (404)
-++|.|+.||||||+|.-+.-+-. . .|-|++.
T Consensus 27 ~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~ 60 (261)
T 2eyu_A 27 LILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 60 (261)
T ss_dssp EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEc
Confidence 489999999999999998887654 3 6776553
No 137
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=91.68 E-value=0.12 Score=46.34 Aligned_cols=30 Identities=20% Similarity=0.274 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+++|.|.+||||||....+..+- |+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~---g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY---GIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---CCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEeH
Confidence 48999999999999887776532 7777766
No 138
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=91.64 E-value=0.11 Score=48.52 Aligned_cols=27 Identities=22% Similarity=0.308 Sum_probs=21.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|+|++|+|||+++..+.......+
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~ 74 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGEN 74 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCc
Confidence 499999999999999887776654333
No 139
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.61 E-value=0.16 Score=45.51 Aligned_cols=31 Identities=29% Similarity=0.194 Sum_probs=24.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCC--eEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEG--WLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ng--WIVL 222 (404)
-++|.|..|||||++...+..+-. ..| ++++
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 489999999999999988877654 567 5544
No 140
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=91.58 E-value=0.15 Score=49.52 Aligned_cols=31 Identities=19% Similarity=0.260 Sum_probs=20.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
..++|+|++|||||++. ++++......++.+
T Consensus 52 ~~vll~GppGtGKT~la-~~ia~~~~~~~~~~ 82 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLA-ETLARLLDVPFTMA 82 (363)
T ss_dssp CCEEEECCTTSSHHHHH-HHHHHHTTCCEEEE
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHcCCCEEEe
Confidence 35999999999999855 44444433333333
No 141
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=91.48 E-value=0.16 Score=44.16 Aligned_cols=30 Identities=27% Similarity=0.222 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|.+|||||++...+..+- ||.++..
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i~~ 43 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---GFTHLST 43 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEcH
Confidence 58999999999999887765532 6776654
No 142
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=91.47 E-value=0.11 Score=44.47 Aligned_cols=32 Identities=34% Similarity=0.463 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|+|.+||||||+...+.. ....+|+.+.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~-~l~~~~~~~~~ 36 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQS-VLPEPWLAFGV 36 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHH-HSSSCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-hcCCCeEEecc
Confidence 389999999999998766543 22346766554
No 143
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=91.41 E-value=0.18 Score=47.06 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=29.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++++|+-|+|||+.|.+.++-+...|.=|+-+-
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3689999999999999999999988877666653
No 144
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.39 E-value=0.13 Score=49.19 Aligned_cols=23 Identities=13% Similarity=0.053 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
-++|+|++|||||+++.|+...+
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998764
No 145
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=91.37 E-value=0.19 Score=43.98 Aligned_cols=27 Identities=26% Similarity=0.391 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.++|.|.+||||||+...+...-...|
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~~g 32 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIELKR 32 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence 589999999999999988877544444
No 146
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.36 E-value=0.17 Score=43.84 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+|||||++...+..+ -||.++..
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~---l~~~~i~~ 40 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQK---YGYTHLST 40 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCeEEcH
Confidence 5999999999999988776542 37776654
No 147
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.32 E-value=0.14 Score=51.62 Aligned_cols=34 Identities=18% Similarity=0.039 Sum_probs=27.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL~IP 225 (404)
-++|.|++|+|||+++.|+...+.. +|.=|+|+.
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s 236 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS 236 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 3899999999999999998887664 577666663
No 148
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=91.29 E-value=0.079 Score=51.24 Aligned_cols=41 Identities=20% Similarity=0.114 Sum_probs=29.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCccccc
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREWT 231 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~~wv 231 (404)
+-++|+|..||||||+|.++.......+|.||.--.+...+
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~i 45 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSV 45 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCc
Confidence 34899999999999999998876544566665433333333
No 149
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.23 E-value=0.11 Score=46.59 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|.|+.|||||+++..+...
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~ 31 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKD 31 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 3899999999999999887653
No 150
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=91.20 E-value=0.14 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999998774
No 151
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=91.18 E-value=0.14 Score=42.20 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
++++.|+.|+|||+++.++..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 599999999999999988764
No 152
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.16 E-value=0.23 Score=43.69 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=24.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|+|..|||||++...+.. .-|+.++...
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~---~~g~~~i~~d 47 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVK---DYSFVHLSAG 47 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH---HSSCEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH---HcCceEEeHH
Confidence 3589999999999998766643 3588777653
No 153
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.11 E-value=0.15 Score=44.11 Aligned_cols=30 Identities=20% Similarity=0.163 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+|||||++...+.. .-||.++..
T Consensus 7 ~i~l~G~~GsGKst~a~~La~---~l~~~~i~~ 36 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAK---LTKRILYDS 36 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHH---HHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH---HhCCCEEEC
Confidence 589999999999998776643 336655543
No 154
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.09 E-value=0.15 Score=42.36 Aligned_cols=21 Identities=33% Similarity=0.426 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
++++.|..|+|||+++.+++.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999998864
No 155
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=91.08 E-value=0.16 Score=48.91 Aligned_cols=34 Identities=32% Similarity=0.359 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL~IP 225 (404)
.++|.|+.|+||||++..+..+.. .+|.=|+.+.
T Consensus 107 vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 488999999999999999988776 4787666664
No 156
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=91.07 E-value=0.069 Score=49.19 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=18.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.++|+|++|||||+++..+...
T Consensus 46 ~vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4899999999999988766544
No 157
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.03 E-value=0.13 Score=45.93 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.2
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+.|+|+.||||||++..+..
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999877654
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=91.03 E-value=0.18 Score=48.07 Aligned_cols=29 Identities=24% Similarity=0.200 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHHHH--HHhCCeEE
Q 045329 193 IVLDGPLCCGKSITLAMLVHW--AREEGWLV 221 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~--A~~ngWIV 221 (404)
++|+|++|+|||+++..+... +...|.+.
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~ 69 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLK 69 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEE
Confidence 999999999999998776663 23345543
No 159
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=90.98 E-value=0.24 Score=47.30 Aligned_cols=31 Identities=16% Similarity=0.206 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
-++|.|++||||||+...+... ...+|++|.
T Consensus 35 livl~G~sGsGKSTla~~L~~~-~~~~~~~Is 65 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEE-TQGNVIVID 65 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHH-TTTCCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hCCCeEEEe
Confidence 4899999999999988776542 224676663
No 160
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=90.97 E-value=0.2 Score=44.75 Aligned_cols=29 Identities=24% Similarity=0.294 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|..||||||++..+.. .|+.++..
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~----lg~~~id~ 34 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD----LGINVIDA 34 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH----TTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH----cCCEEEEc
Confidence 489999999999998877643 58877764
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.94 E-value=0.16 Score=44.22 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.++|.|..||||||+...+..+- |+.++..|
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l---~~~~~~e~ 32 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL---GYEIFKEP 32 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---CCEEECCC
T ss_pred EEEEECCCccCHHHHHHHHHHhc---CCcEEccc
Confidence 48999999999999988776543 55555444
No 162
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.94 E-value=0.16 Score=41.99 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++.++..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3699999999999999988764
No 163
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=90.91 E-value=0.13 Score=46.03 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=19.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
-+.|.|+.||||||++..+.-.-
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 37899999999999998877653
No 164
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=90.88 E-value=0.14 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.099 Sum_probs=20.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-++|.|++|||||+++.|+...+.
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~ 203 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQ 203 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCChHHHHHHHHHHhc
Confidence 489999999999999999876554
No 165
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.86 E-value=0.14 Score=42.08 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
++++.|..|+|||+++.++..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~ 25 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999988864
No 166
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.86 E-value=0.15 Score=42.42 Aligned_cols=22 Identities=23% Similarity=0.217 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3599999999999999988764
No 167
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.86 E-value=0.14 Score=44.78 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|+.|+|||++|..+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~ 27 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTR 27 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 3589999999999999988765
No 168
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=90.83 E-value=0.24 Score=44.93 Aligned_cols=30 Identities=17% Similarity=0.138 Sum_probs=23.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+..+- |+.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY---SLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeEEch
Confidence 48999999999999887775532 6776665
No 169
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.81 E-value=0.2 Score=48.64 Aligned_cols=33 Identities=24% Similarity=0.245 Sum_probs=26.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|.|+.||||||++..+..+...+|.=|+.+
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv 138 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA 138 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence 478999999999999999998776666544433
No 170
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=90.81 E-value=0.18 Score=44.43 Aligned_cols=30 Identities=23% Similarity=0.268 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+|||||++...+..+ -||.++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~---l~~~~i~~ 51 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEK---LGIPQIST 51 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---HTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCcEEeh
Confidence 5999999999999987766543 26766655
No 171
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.81 E-value=0.14 Score=43.71 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=19.9
Q ss_pred ceeEEEECCCCCcHHHHHHHHHH
Q 045329 190 RKQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 190 r~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.+++|.|..|+|||+++.+++.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999988753
No 172
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=90.80 E-value=1.8 Score=45.89 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=41.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH-hC--CeEEEEecCcccccccCeeecC-CC--CCCccCHHHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR-EE--GWLVLYVPRGREWTHGGYFYKN-PQ--TGLWDTPLQAENVLKDFIK 260 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~-~n--gWIVL~IP~a~~wvng~~~y~~-~~--~g~ydQP~~A~~~Lk~fl~ 260 (404)
+.+++.|..|||||++|.-++.... .. +-+-+++=++..- +-..|.. ++ ......|..+.+.|+.+..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg~--eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~ 288 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKML--ELSIYEGIPHLLCPVVTDMKEAANALRWSVA 288 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSSH--HHHTTTTCTTBSSSCBCCHHHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCChh--hhHhhcCCCcccceeeCCHHHHHHHHHHHHH
Confidence 5689999999999999998776433 32 4555665454431 0011221 21 1245678888887776643
No 173
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=90.78 E-value=0.15 Score=45.36 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|.|++|||||++...+...
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~ 35 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSE 35 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4899999999999988887654
No 174
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.78 E-value=0.14 Score=48.09 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|+|++|||||+++..+....
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999887665543
No 175
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.73 E-value=0.16 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.386 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCE 28 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 176
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=90.69 E-value=0.16 Score=42.69 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.+++.
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998864
No 177
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=90.68 E-value=0.12 Score=45.74 Aligned_cols=22 Identities=23% Similarity=0.222 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+.|+|+.||||||++..+...
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999877664
No 178
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=90.67 E-value=0.15 Score=47.64 Aligned_cols=31 Identities=32% Similarity=0.680 Sum_probs=24.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
++|.|++|||||++...+. ..-|+.++..-.
T Consensus 4 i~I~G~~GSGKSTla~~La---~~~~~~~i~~D~ 34 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQIA---QETGWPVVALDR 34 (253)
T ss_dssp EEEECCTTSSHHHHHHHHH---HHHCCCEEECCS
T ss_pred EEEECCCCcCHHHHHHHHH---hcCCCeEEeccH
Confidence 7999999999999877663 344788877654
No 179
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=90.67 E-value=0.14 Score=46.89 Aligned_cols=21 Identities=24% Similarity=0.370 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++|.|++||||||++..+..
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~ 49 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQ 49 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999988764
No 180
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=90.61 E-value=0.29 Score=46.03 Aligned_cols=45 Identities=22% Similarity=0.351 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHH
Q 045329 166 FLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 166 tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+++++.|++.+..- ..+ ....+++++.|.+|+|||+++..++..
T Consensus 3 ~~~~~~~l~~~~~~~--~~~-~~~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 3 LIPVINKLQDVFNTL--GSD-PLDLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp HHHHHHHHHHHTTTS--SSC-TTCCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHc--CCC-CCCCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 467788887765321 111 122367999999999999999988753
No 181
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=90.60 E-value=0.13 Score=44.47 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
+++|.|+.|||||+++..++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999988764
No 182
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=90.60 E-value=0.33 Score=46.66 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=17.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.++|+|++|||||++..-+.+
T Consensus 105 n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999998764443
No 183
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=90.57 E-value=0.17 Score=42.02 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++..++.
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~ 28 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVE 28 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999998764
No 184
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=90.55 E-value=0.18 Score=42.73 Aligned_cols=29 Identities=28% Similarity=0.275 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|+|..|||||++...+... -||.++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~---l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS---LNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH---HTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHH---hCCCEEE
Confidence 4899999999999988776553 2565554
No 185
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.48 E-value=0.16 Score=42.99 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|+.|+|||+++.++.
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~ 24 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT 24 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 358999999999999999875
No 186
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=90.46 E-value=0.17 Score=42.45 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|.+|+|||+++.++.
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~ 25 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFA 25 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEECCCCccHHHHHHHHh
Confidence 469999999999999998775
No 187
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.45 E-value=0.22 Score=46.67 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+.. ...||.++..
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~--~~~~~~~i~~ 34 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIA--KNPGFYNINR 34 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHH--HSTTEEEECH
T ss_pred EEEEECCCCCCHHHHHHHHHH--hCCCcEEecc
Confidence 489999999999998877654 1248877754
No 188
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.41 E-value=0.18 Score=42.42 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++.+++.
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~ 30 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVN 30 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988875
No 189
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.39 E-value=0.2 Score=52.87 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCe-EEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGW-LVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngW-IVL~IP~ 226 (404)
-++|.|++|||||+++..++.+... .++ |++--|.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 3799999999999999999987665 454 4343343
No 190
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.35 E-value=0.17 Score=43.24 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=19.1
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|+.|+|||+++.++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~ 28 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALT 28 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 569999999999999999875
No 191
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=90.34 E-value=0.18 Score=49.62 Aligned_cols=23 Identities=17% Similarity=0.086 Sum_probs=21.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
-+.|.|++|||||+++.|+...+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998876
No 192
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=90.34 E-value=0.15 Score=49.26 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|+|++|||||+++.-+....
T Consensus 53 ~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 48999999999999876665543
No 193
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=90.32 E-value=0.15 Score=46.29 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
-+.|.|+.||||||++..+.-.- . |-|.+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~-p-G~i~~ 53 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF-P-NYFYF 53 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS-T-TTEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhC-C-CcEEE
Confidence 38999999999999999887654 2 66655
No 194
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=90.30 E-value=0.24 Score=48.34 Aligned_cols=20 Identities=35% Similarity=0.556 Sum_probs=16.1
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
.++|+|++|||||++...+.
T Consensus 74 ~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 49999999999997665443
No 195
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=90.29 E-value=0.2 Score=51.27 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=29.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.-+++.|+.||||||+++.+..+...+|.=|+.+.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35889999999999999999998888887776653
No 196
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=90.26 E-value=0.16 Score=42.28 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++..+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 3599999999999999988763
No 197
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=90.26 E-value=0.17 Score=48.46 Aligned_cols=23 Identities=17% Similarity=0.223 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.|+|+|++|+|||+++..+....
T Consensus 40 ~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999997776554
No 198
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.25 E-value=0.18 Score=42.09 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=18.2
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
+++|.|.+|+|||+++..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999998875
No 199
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=90.24 E-value=0.15 Score=46.84 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|.|+.||||||+|..+...
T Consensus 18 ii~l~GpsGsGKSTLlk~L~g~ 39 (219)
T 1s96_A 18 LYIVSAPSGAGKSSLIQALLKT 39 (219)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcc
Confidence 4899999999999999887664
No 200
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.23 E-value=0.17 Score=48.02 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A 214 (404)
++|+|++|||||+++..+....
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999887766653
No 201
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=90.23 E-value=0.25 Score=43.49 Aligned_cols=33 Identities=30% Similarity=0.228 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|..||||||+...+...-...+.-|..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 489999999999999998877654555544333
No 202
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=90.22 E-value=0.38 Score=44.67 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|.+|+|||+++..++.
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g 48 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVG 48 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHT
T ss_pred CeEEEEeCCCCCHHHHHHHHHC
Confidence 5799999999999999998863
No 203
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=90.19 E-value=0.15 Score=44.57 Aligned_cols=22 Identities=32% Similarity=0.314 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|+.|||||+++..+..
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~ 51 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTR 51 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4689999999999999988764
No 204
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=90.16 E-value=0.2 Score=42.05 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++.++..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~ 37 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTE 37 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 5699999999999999998764
No 205
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=90.16 E-value=0.2 Score=41.52 Aligned_cols=22 Identities=32% Similarity=0.345 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988765
No 206
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=90.09 E-value=0.24 Score=44.19 Aligned_cols=28 Identities=25% Similarity=0.266 Sum_probs=22.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
..+.|.|+.||||||++..+...-...|
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g 50 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQG 50 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 3588999999999999988877655433
No 207
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=90.08 E-value=0.31 Score=43.63 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|.|.+||||||+...+..+ -||.++..
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~---l~~~~i~~ 35 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQER---FHAAHLAT 35 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH---HCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHH---cCceEEeh
Confidence 5999999999999987776543 36776654
No 208
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.03 E-value=0.19 Score=41.58 Aligned_cols=21 Identities=29% Similarity=0.325 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
++++.|..|+|||+++..+..
T Consensus 5 ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999988874
No 209
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.99 E-value=0.2 Score=42.46 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 210
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=89.99 E-value=0.21 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++.++..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988754
No 211
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.98 E-value=0.11 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=14.1
Q ss_pred eEEEECCCCCcHHHHHHHHH-HH
Q 045329 192 QIVLDGPLCCGKSITLAMLV-HW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav-~~ 213 (404)
-+.|.|+.||||||++..+. ..
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC----CHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 48999999999999998876 54
No 212
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=89.97 E-value=0.27 Score=43.65 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
..++|.|..|||||+++.+++......
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~~~ 65 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLKDK 65 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 468999999999999999999876554
No 213
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=89.95 E-value=0.16 Score=43.66 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.+++.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999998864
No 214
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=89.91 E-value=0.25 Score=45.08 Aligned_cols=35 Identities=17% Similarity=0.148 Sum_probs=25.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH---hCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR---EEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~---~ngWIVL~IP 225 (404)
..++|.|+.|+|||++...++.... ..+++++..-
T Consensus 17 ~gvli~G~SGaGKStlal~L~~rG~~lvaDD~v~i~~~ 54 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQE 54 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCCeEecCCEEEEEEe
Confidence 4699999999999999988887432 2344444443
No 215
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.89 E-value=0.22 Score=41.38 Aligned_cols=21 Identities=29% Similarity=0.309 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
+++|.|..|+|||+++.++..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999988765
No 216
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=89.88 E-value=0.19 Score=42.20 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..++.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998863
No 217
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=89.86 E-value=0.25 Score=44.98 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=26.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.-+++.|..|+|||+++.++..+.. .|.=|+-|
T Consensus 15 ~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv 47 (262)
T 1yrb_A 15 MIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV 47 (262)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence 3488999999999999999988776 66444444
No 218
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=89.85 E-value=0.21 Score=42.49 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..++.
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~ 29 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTK 29 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999998875
No 219
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=89.79 E-value=0.28 Score=47.39 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL 222 (404)
-+.|.|+.||||||++.-+..+.... |-|.+
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 47899999999999999998876654 44444
No 220
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=89.79 E-value=0.45 Score=45.00 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++++|++|||||++...+ |..-++=++++.
T Consensus 50 ~~L~~G~~G~GKT~la~~l---a~~l~~~~~~i~ 80 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKAL---CHDVNADMMFVN 80 (324)
T ss_dssp EEEECSSTTSSHHHHHHHH---HHHTTEEEEEEE
T ss_pred EEEeeCcCCCCHHHHHHHH---HHHhCCCEEEEc
Confidence 3788899999999887655 344467677765
No 221
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=89.76 E-value=0.3 Score=47.81 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=25.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.+++|.|.+|+|||+++.++.......|.=|.
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~ 111 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVA 111 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceE
Confidence 46999999999999999998887665554333
No 222
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=89.66 E-value=0.29 Score=48.03 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
-+.|.|+.||||||++..+..+-...+.=|+.
T Consensus 131 vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l 162 (328)
T 3e70_C 131 VIMFVGFNGSGKTTTIAKLANWLKNHGFSVVI 162 (328)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCEEEE
Confidence 48999999999999999998877766544433
No 223
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.66 E-value=0.2 Score=45.27 Aligned_cols=31 Identities=16% Similarity=0.066 Sum_probs=24.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|.|.+|||||++...+.. .-|+.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~---~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT---HFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH---HSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHH---HcCCeEEec
Confidence 3599999999999998776654 347877754
No 224
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.65 E-value=0.21 Score=42.02 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999988753
No 225
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.65 E-value=0.23 Score=51.18 Aligned_cols=28 Identities=21% Similarity=0.213 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW 219 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW 219 (404)
-++|.|++|||||+++.++......+|-
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~ 310 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKE 310 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCC
Confidence 3899999999999999999887665664
No 226
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=89.65 E-value=0.22 Score=41.98 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 227
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=89.61 E-value=0.28 Score=44.09 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=23.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|.|.+||||||....+..+- ||.++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l---~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY---GLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH---CCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CceEEeh
Confidence 358999999999999876665432 7877765
No 228
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=89.60 E-value=0.21 Score=42.34 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988874
No 229
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.51 E-value=0.18 Score=41.91 Aligned_cols=20 Identities=25% Similarity=0.306 Sum_probs=17.9
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
+++|.|..|+|||+++..+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 58999999999999998764
No 230
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=89.50 E-value=0.22 Score=42.04 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhh
Confidence 4699999999999999988774
No 231
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=89.49 E-value=0.31 Score=47.56 Aligned_cols=33 Identities=30% Similarity=0.404 Sum_probs=26.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-+.+.|+.|+||||++..+..+....|.=|+.+
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 488999999999999999888766665544444
No 232
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=89.47 E-value=0.19 Score=42.85 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
+++|.|..|+|||+++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999988763
No 233
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.46 E-value=0.24 Score=59.47 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=32.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a 227 (404)
-++|+|++|||||++..|+++-|..+|+-|+||.-.
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e 1464 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 1464 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcc
Confidence 489999999999999999999999999999998543
No 234
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.41 E-value=0.23 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.597 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|+.|+|||+++.++..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~ 34 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTT 34 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999988765
No 235
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=89.31 E-value=0.31 Score=50.27 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=22.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|+|++|||||+++..+ |.+.+.-+++|.
T Consensus 239 ~~vLL~GppGtGKT~lArai---a~~~~~~fv~vn 270 (489)
T 3hu3_A 239 RGILLYGPPGTGKTLIARAV---ANETGAFFFLIN 270 (489)
T ss_dssp CEEEEECSTTSSHHHHHHHH---HHHCSSEEEEEE
T ss_pred CcEEEECcCCCCHHHHHHHH---HHHhCCCEEEEE
Confidence 35999999999999876554 333355555553
No 236
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.30 E-value=0.23 Score=41.76 Aligned_cols=22 Identities=23% Similarity=0.253 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999988763
No 237
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=89.29 E-value=0.32 Score=47.11 Aligned_cols=31 Identities=19% Similarity=0.246 Sum_probs=24.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL 222 (404)
-+.|.|+.||||||++.-+..+-... |-|.+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 47899999999999999988876654 44433
No 238
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=89.28 E-value=0.15 Score=51.88 Aligned_cols=34 Identities=26% Similarity=0.337 Sum_probs=30.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
.+++.|+.|+|||++.+.+..++..+|+=|+.|.
T Consensus 101 vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 4899999999999999999999888888777664
No 239
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=89.27 E-value=0.087 Score=52.31 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|+|++|||||++..|+.+.
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHh
Confidence 3799999999999999998654
No 240
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.25 E-value=0.2 Score=42.99 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|.+|+|||+++..+..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 3599999999999999988753
No 241
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=89.23 E-value=0.25 Score=43.78 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
+.++|.|..|+|||+++.+++......
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 469999999999999999998876443
No 242
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.22 E-value=0.25 Score=41.59 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~ 32 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKD 32 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999988764
No 243
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=89.18 E-value=0.23 Score=41.74 Aligned_cols=21 Identities=24% Similarity=0.251 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|..|+|||+++..++
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 569999999999999998875
No 244
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=89.17 E-value=0.24 Score=42.09 Aligned_cols=22 Identities=23% Similarity=0.215 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988873
No 245
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.17 E-value=0.25 Score=42.91 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|||||+++.+++.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988765
No 246
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=89.14 E-value=0.23 Score=41.75 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+++|.|..|+|||+++..+..-
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 56999999999999999887754
No 247
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=89.12 E-value=0.38 Score=42.26 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=22.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
..++|+|..||||||+...+..+-...+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3599999999999999988877544343
No 248
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.06 E-value=0.23 Score=43.44 Aligned_cols=33 Identities=21% Similarity=0.205 Sum_probs=23.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe--EEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW--LVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW--IVL~IP~ 226 (404)
.++|.|..||||||+...+..+- .|+ +.+..|.
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~ 40 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQ 40 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCC
Confidence 48999999999999988776542 345 4444443
No 249
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=89.06 E-value=0.23 Score=42.22 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~ 32 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIE 32 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999998764
No 250
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.00 E-value=0.26 Score=44.41 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-.+|+|+.|+|||++| .++.||.
T Consensus 25 ~~~I~G~NgsGKStil-~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLL-DAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEEcCCCCCHHHHH-HHHHHHh
Confidence 3799999999999987 4556655
No 251
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.94 E-value=0.27 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~ 43 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQ 43 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999998874
No 252
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.94 E-value=0.21 Score=43.19 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
.+|+|+.|||||++|. ++.++.
T Consensus 29 ~~i~G~NGsGKStll~-ai~~~l 50 (182)
T 3kta_A 29 TAIVGANGSGKSNIGD-AILFVL 50 (182)
T ss_dssp EEEEECTTSSHHHHHH-HHHHHT
T ss_pred EEEECCCCCCHHHHHH-HHHHHH
Confidence 7999999999998874 566653
No 253
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.93 E-value=0.25 Score=45.16 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-++|.|+.|||||+++..++..
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHhh
Confidence 4899999999999999887753
No 254
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.86 E-value=0.28 Score=41.47 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 255
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.84 E-value=0.39 Score=47.66 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=25.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh--CCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE--EGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~--ngWIVL 222 (404)
-++|.|+.||||||+|.-+..+-.. .|-|++
T Consensus 138 ~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~ 170 (372)
T 2ewv_A 138 LILVTGPTGSGKSTTIASMIDYINQTKSYHIIT 170 (372)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEE
Confidence 4899999999999999998886553 566644
No 256
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=88.83 E-value=0.26 Score=42.25 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999988874
No 257
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.81 E-value=0.28 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.306 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999988765
No 258
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=88.80 E-value=0.38 Score=45.53 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=29.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++++|+-|+|||+.|.+.++.+...|.=|+-+-
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899999999999999999999988876666553
No 259
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.78 E-value=0.25 Score=44.66 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~ 212 (404)
+||.||.|+||++++..++.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~ 23 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFA 23 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 89999999999999987754
No 260
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=88.75 E-value=0.15 Score=48.43 Aligned_cols=21 Identities=24% Similarity=0.290 Sum_probs=17.3
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++|+|++|||||+++..+..
T Consensus 47 ~vLl~G~~GtGKT~la~~la~ 67 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAA 67 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHH
T ss_pred eEEEECCCCccHHHHHHHHHH
Confidence 399999999999987765554
No 261
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=88.67 E-value=0.25 Score=48.82 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
++|+|+.|+|||++| -++.||.
T Consensus 26 ~~i~G~NGaGKTTll-~ai~~al 47 (365)
T 3qf7_A 26 TVVEGPNGAGKSSLF-EAISFAL 47 (365)
T ss_dssp EEEECCTTSSHHHHH-HHHHHHH
T ss_pred EEEECCCCCCHHHHH-HHHHHHh
Confidence 789999999999888 6666663
No 262
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=88.67 E-value=0.22 Score=46.11 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=21.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 33 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 64 (235)
T 3tif_A 33 FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYI 64 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCceEEEE
Confidence 388999999999999876654322 3455544
No 263
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=88.66 E-value=0.43 Score=48.27 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=17.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
+.++|+|++|||||++...+...
T Consensus 64 ~~iLl~GppGtGKT~la~ala~~ 86 (456)
T 2c9o_A 64 RAVLLAGPPGTGKTALALAIAQE 86 (456)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHHHHHH
Confidence 35999999999999876544443
No 264
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.64 E-value=0.19 Score=43.17 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=16.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.++|.|.+|||||++...+. ..-|+-++
T Consensus 7 ~I~l~G~~GsGKST~a~~La---~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLH---ERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHH---HHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHH---HhcCCCEE
Confidence 48999999999999877763 33455444
No 265
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=88.62 E-value=0.38 Score=44.27 Aligned_cols=33 Identities=21% Similarity=0.362 Sum_probs=25.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|.|..||||||++..+..+-.. |+-|+..
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 45899999999999999888877655 6555443
No 266
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=88.62 E-value=0.27 Score=42.48 Aligned_cols=22 Identities=18% Similarity=0.253 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~ 36 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMY 36 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988764
No 267
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=88.57 E-value=0.24 Score=41.95 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|..|+|||+++..++
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~ 27 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFV 27 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHH
Confidence 569999999999999998887
No 268
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=88.53 E-value=0.25 Score=44.31 Aligned_cols=28 Identities=11% Similarity=0.217 Sum_probs=21.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.++|.|.+||||||+...+..+ -|+..+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~---l~~~~i 34 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTK---YQLAHI 34 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH---HCCEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHH---hCCcee
Confidence 4999999999999988776543 355443
No 269
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.52 E-value=0.32 Score=49.29 Aligned_cols=32 Identities=28% Similarity=0.278 Sum_probs=24.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL~ 223 (404)
-++|.|+.||||||+|.-++.+-.. .|-|++.
T Consensus 169 ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 169 IILVTGPTGSGKSTTLYAGLQELNSSERNILTV 201 (418)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence 4899999999999999998877543 4555543
No 270
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=88.49 E-value=0.27 Score=44.67 Aligned_cols=22 Identities=36% Similarity=0.333 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..++.
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHcC
Confidence 5799999999999999988774
No 271
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=88.48 E-value=0.44 Score=43.64 Aligned_cols=34 Identities=32% Similarity=0.390 Sum_probs=28.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|..||||||.+..+..+-...|.-|+...
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 4899999999999999999998887777555443
No 272
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.48 E-value=0.3 Score=42.02 Aligned_cols=22 Identities=18% Similarity=0.157 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.+++.
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 273
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.47 E-value=0.31 Score=41.16 Aligned_cols=22 Identities=23% Similarity=0.154 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~ 30 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTS 30 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4599999999999999977763
No 274
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=88.47 E-value=0.3 Score=42.15 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 275
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.47 E-value=0.3 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~ 37 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTD 37 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988864
No 276
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.46 E-value=0.3 Score=42.38 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+++|.|..|+|||+++..++..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999888653
No 277
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.44 E-value=0.28 Score=42.16 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=20.1
Q ss_pred ceeEEEECCCCCcHHHHHHHHHH
Q 045329 190 RKQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 190 r~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..+++|.|..|+|||+++.+++.
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999988753
No 278
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=88.43 E-value=0.22 Score=47.44 Aligned_cols=31 Identities=16% Similarity=0.297 Sum_probs=20.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|+|++|||||+++..+.. ......+.++
T Consensus 48 ~vll~G~pGtGKT~la~~la~-~~~~~~~~i~ 78 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAK-TMDLDFHRIQ 78 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHH-HTTCCEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHH-HhCCCeEEEe
Confidence 489999999999987765533 3333344333
No 279
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=88.43 E-value=0.43 Score=45.22 Aligned_cols=30 Identities=23% Similarity=0.144 Sum_probs=24.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|+|..||||||+...+.. .|+-|+..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~----lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN----LGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH----HTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHHH----CCCcEEeh
Confidence 3589999999999998877763 48877764
No 280
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=88.41 E-value=0.31 Score=41.57 Aligned_cols=29 Identities=31% Similarity=0.136 Sum_probs=21.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
++|+|..|||||++...+.. .-||-++..
T Consensus 10 i~l~G~~GsGKSTva~~La~---~lg~~~id~ 38 (168)
T 1zuh_A 10 LVLIGFMGSGKSSLAQELGL---ALKLEVLDT 38 (168)
T ss_dssp EEEESCTTSSHHHHHHHHHH---HHTCCEEEH
T ss_pred EEEECCCCCCHHHHHHHHHH---HhCCCEEEC
Confidence 89999999999998766543 336655543
No 281
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=88.30 E-value=0.32 Score=46.90 Aligned_cols=33 Identities=30% Similarity=0.364 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-+++.|+.|+|||+++..+..+...+|.=|+.+
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 478899999999999999988877776655554
No 282
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=88.28 E-value=0.29 Score=42.86 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
-+++|-|.+|+|||+++.+.+
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~ 27 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFA 27 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998765
No 283
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=88.23 E-value=0.27 Score=45.51 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
..++|.|.+|||||++...+... ...+++++
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~-l~~~~~~~ 63 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKE-FQGNIVII 63 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHH-TTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh-cCCCcEEE
Confidence 35899999999999987776543 22345544
No 284
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.23 E-value=0.36 Score=50.16 Aligned_cols=34 Identities=18% Similarity=0.162 Sum_probs=23.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
+.++|+|++|||||+++..+... ...+.+.+.-+
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~-~~~~~i~i~g~ 98 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGE-ARVPFITASGS 98 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH-TTCCEEEEEGG
T ss_pred ceEEEECCCCCCHHHHHHHHHHH-hCCCEEEEehh
Confidence 45999999999999877555444 34566655543
No 285
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.23 E-value=0.24 Score=41.83 Aligned_cols=22 Identities=18% Similarity=0.184 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.+++.
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988765
No 286
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=88.18 E-value=0.32 Score=41.97 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~ 44 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIAS 44 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988864
No 287
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=88.16 E-value=0.27 Score=45.13 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=18.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+-|+|+.||||||++..+...
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999877653
No 288
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=88.11 E-value=0.31 Score=41.93 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 289
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=88.05 E-value=0.29 Score=42.00 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-++++.|..|+|||+++.++..
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~ 29 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAK 29 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998775
No 290
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=88.02 E-value=0.47 Score=48.32 Aligned_cols=23 Identities=26% Similarity=0.154 Sum_probs=18.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|+|++|||||++...+....
T Consensus 203 ~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 203 NPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp EEEEESCTTTTTHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999776555543
No 291
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=88.01 E-value=0.31 Score=42.02 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|..|+|||+++.++.
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~ 37 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLA 37 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999998765
No 292
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=87.99 E-value=0.35 Score=52.87 Aligned_cols=35 Identities=20% Similarity=0.181 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-------CCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-------EGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-------ngWIVL~IP~ 226 (404)
.++|+|++|||||+++..+...... .|+-|++++-
T Consensus 193 ~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 193 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 4899999999999988777666543 3777777754
No 293
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.99 E-value=0.28 Score=42.41 Aligned_cols=23 Identities=17% Similarity=0.120 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+++|.|..|+|||+++..+..-
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46999999999999999887753
No 294
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.98 E-value=0.36 Score=41.51 Aligned_cols=23 Identities=22% Similarity=0.049 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-.+|+|+.|+|||++| .++.||.
T Consensus 25 ~~~I~G~NGsGKStil-~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL-DAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHH
T ss_pred eEEEECCCCCCHHHHH-HHHHHHH
Confidence 3799999999999986 4666765
No 295
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.97 E-value=0.31 Score=42.28 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 296
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=87.95 E-value=0.4 Score=47.00 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=23.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
..+.|.|.+|+|||++|..++.+-...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 469999999999999999999876544
No 297
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.82 E-value=0.35 Score=42.15 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988763
No 298
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.75 E-value=0.39 Score=46.01 Aligned_cols=31 Identities=29% Similarity=0.340 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH---hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR---EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~---~ngWIVL 222 (404)
.+.|.|+.||||||++..+...-. ..|-|.+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~v 115 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALLSRWPEHRRVEL 115 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEE
Confidence 488999999999999988776543 3455544
No 299
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=87.70 E-value=0.25 Score=45.41 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 63 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDAPTEGKVFL 63 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 378999999999999876654322 3465554
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.69 E-value=0.38 Score=56.89 Aligned_cols=35 Identities=20% Similarity=0.313 Sum_probs=31.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
-++|+|++|||||++++|++..+..+|--|+||.-
T Consensus 385 lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~ 419 (1706)
T 3cmw_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 419 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEc
Confidence 38999999999999999999999888888888854
No 301
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=87.68 E-value=0.36 Score=41.68 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~ 45 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSK 45 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 302
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.68 E-value=0.27 Score=43.49 Aligned_cols=31 Identities=19% Similarity=0.095 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.+.|+|+.||||||++..+... ..++.++..
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~--~~~~~~i~~ 53 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKH--LPNCSVISQ 53 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT--STTEEEEEG
T ss_pred EEEEECCCCCCHHHHHHHHHHh--cCCcEEEeC
Confidence 4889999999999988766542 126666554
No 303
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.68 E-value=0.31 Score=41.84 Aligned_cols=22 Identities=27% Similarity=0.267 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.+++.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 4699999999999999998875
No 304
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=87.67 E-value=0.46 Score=47.28 Aligned_cols=31 Identities=26% Similarity=0.361 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL 222 (404)
-+.|.|+.||||||++.-+..+...+ |-|.+
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 48899999999999999998877654 44444
No 305
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=87.61 E-value=0.36 Score=41.80 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.+++.
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHh
Confidence 4699999999999999988775
No 306
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.60 E-value=0.32 Score=42.16 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~ 45 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQ 45 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 307
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=87.55 E-value=0.35 Score=41.15 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=17.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++ +.+.
T Consensus 15 ~ki~vvG~~~~GKssL~-~~l~ 35 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNL-KWIY 35 (198)
T ss_dssp EEEEEECSTTSSHHHHH-HHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHH
Confidence 56999999999999998 5444
No 308
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=87.54 E-value=0.23 Score=45.21 Aligned_cols=22 Identities=18% Similarity=0.501 Sum_probs=19.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+.|.|+.||||||++..+..+
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4889999999999999887766
No 309
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=87.54 E-value=0.33 Score=42.48 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+.|.|+.|+||||+|.-+.-.
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~ 56 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQG 56 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHh
Confidence 4789999999999999877654
No 310
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=87.53 E-value=0.34 Score=49.39 Aligned_cols=21 Identities=24% Similarity=0.435 Sum_probs=16.9
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++|+|++|||||+++..+..
T Consensus 52 ~vLL~GppGtGKTtlAr~ia~ 72 (447)
T 3pvs_A 52 SMILWGPPGTGKTTLAEVIAR 72 (447)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 499999999999887655443
No 311
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=87.52 E-value=0.6 Score=42.39 Aligned_cols=22 Identities=18% Similarity=0.487 Sum_probs=18.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+++.|+.|||||+++...+.-
T Consensus 78 ~~~i~g~TGsGKTt~~~~~~~~ 99 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQFILD 99 (235)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHHHhc
Confidence 3899999999999988776544
No 312
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.52 E-value=0.28 Score=43.51 Aligned_cols=27 Identities=22% Similarity=0.347 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
.+.|.|+.||||||++.-++-+-...|
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g 30 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERG 30 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcC
Confidence 478999999999999999888766554
No 313
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.47 E-value=0.37 Score=41.76 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988765
No 314
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=87.44 E-value=0.42 Score=52.61 Aligned_cols=20 Identities=30% Similarity=0.516 Sum_probs=17.1
Q ss_pred eeEEEECCCCCcHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAML 210 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qa 210 (404)
+.++|+|++|||||++...+
T Consensus 239 ~GILL~GPPGTGKT~LArai 258 (806)
T 3cf2_A 239 RGILLYGPPGTGKTLIARAV 258 (806)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 57999999999999887554
No 315
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.43 E-value=0.37 Score=42.27 Aligned_cols=23 Identities=17% Similarity=0.304 Sum_probs=20.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+++|.|..|+|||+++.+++.-
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999987753
No 316
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=87.43 E-value=0.3 Score=41.69 Aligned_cols=22 Identities=18% Similarity=0.191 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++.++..
T Consensus 19 ~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 19 LRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988763
No 317
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=87.42 E-value=0.31 Score=45.45 Aligned_cols=31 Identities=32% Similarity=0.468 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 26 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 57 (240)
T 2onk_A 26 YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRL 57 (240)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCceEEEE
Confidence 488999999999999987765432 3466655
No 318
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=87.42 E-value=0.3 Score=45.32 Aligned_cols=36 Identities=36% Similarity=0.575 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeE-----EEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWL-----VLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWI-----VL~IP~a 227 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-| |-|+|.-
T Consensus 33 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~i~~v~Q~ 74 (237)
T 2cbz_A 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAYVPQQ 74 (237)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECSCEEEECSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEEEEcCC
Confidence 489999999999999987654322 34555 3456554
No 319
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=87.41 E-value=0.42 Score=52.40 Aligned_cols=35 Identities=23% Similarity=0.362 Sum_probs=26.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCe-EEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGW-LVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngW-IVL~IP~ 226 (404)
-++|.|++|||||+++..++.+... .++ |++--|.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 3799999999999999999987765 444 4444444
No 320
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=87.39 E-value=0.28 Score=42.03 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999988764
No 321
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=87.39 E-value=0.31 Score=45.18 Aligned_cols=20 Identities=35% Similarity=0.491 Sum_probs=17.4
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
.+.|+|+.||||||++..+.
T Consensus 29 ~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999987664
No 322
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=87.38 E-value=0.32 Score=41.77 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|..|+|||+++.++.
T Consensus 17 ~~i~v~G~~~~GKssl~~~l~ 37 (187)
T 1zj6_A 17 HKVIIVGLDNAGKTTILYQFS 37 (187)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998876
No 323
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=87.35 E-value=0.52 Score=49.08 Aligned_cols=34 Identities=24% Similarity=0.427 Sum_probs=28.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|.|.+||||||+++.+.++...+|+=|+-|
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV 135 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI 135 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3588999999999999999999888877755444
No 324
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=87.34 E-value=0.26 Score=41.77 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|+.|+|||+++.++.
T Consensus 19 ~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 19 LRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 569999999999999997654
No 325
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.30 E-value=0.34 Score=42.28 Aligned_cols=22 Identities=27% Similarity=0.255 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 326
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=87.27 E-value=0.55 Score=46.12 Aligned_cols=33 Identities=24% Similarity=0.223 Sum_probs=25.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++.|+.|+|||+++..++......|--|+.+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 479999999999999999887766654444444
No 327
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=87.25 E-value=0.39 Score=41.79 Aligned_cols=22 Identities=41% Similarity=0.454 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999988764
No 328
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=87.17 E-value=0.55 Score=45.85 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=25.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC-CeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE-GWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL 222 (404)
..+.|.|++|+|||++|..+..+-... |=|.+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i 88 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV 88 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence 358999999999999999998876643 43433
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=87.09 E-value=0.32 Score=44.70 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 68 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIY 68 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEE
Confidence 388999999999999987654322 2355544
No 330
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=87.03 E-value=0.34 Score=42.47 Aligned_cols=22 Identities=23% Similarity=0.299 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.+++.
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999998864
No 331
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=87.01 E-value=0.58 Score=49.37 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=26.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh----CC-eEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE----EG-WLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~----ng-WIVL~IP~ 226 (404)
-++|+|++|||||+++..++..... .+ -|++--|.
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APT 205 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPT 205 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCC
Confidence 4899999999999999998887652 34 45555565
No 332
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=87.00 E-value=0.32 Score=45.87 Aligned_cols=31 Identities=26% Similarity=0.348 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 34 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 65 (262)
T 1b0u_A 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIV 65 (262)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 378999999999999987654432 3466654
No 333
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=87.00 E-value=0.43 Score=57.36 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=31.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a 227 (404)
-++|+|++|+|||++++|++..+..+|.-|+||.--
T Consensus 385 lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E 420 (2050)
T 3cmu_A 385 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 420 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 389999999999999999999998888888888543
No 334
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.94 E-value=0.26 Score=44.96 Aligned_cols=29 Identities=17% Similarity=0.050 Sum_probs=23.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWL 220 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWI 220 (404)
.+.|.|+.||||||+|.-+.-..-..|-|
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl~p~~G~I 52 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQALQSKQV 52 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcCCee
Confidence 37899999999999998887773356766
No 335
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=86.94 E-value=0.34 Score=42.26 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 5699999999999999988875
No 336
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=86.93 E-value=0.33 Score=45.04 Aligned_cols=31 Identities=26% Similarity=0.441 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 65 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceEEE
Confidence 478999999999999987654322 3455544
No 337
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=86.90 E-value=0.39 Score=42.22 Aligned_cols=22 Identities=18% Similarity=0.147 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999987763
No 338
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=86.84 E-value=0.4 Score=41.52 Aligned_cols=22 Identities=23% Similarity=0.208 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 21 ~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 21 VKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988764
No 339
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=86.82 E-value=0.52 Score=49.19 Aligned_cols=32 Identities=22% Similarity=0.245 Sum_probs=25.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE-GWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~ 223 (404)
-+.|.|+.||||||+|..+..+-... |-|.|.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 48899999999999999988876654 555553
No 340
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=86.80 E-value=0.34 Score=45.46 Aligned_cols=31 Identities=23% Similarity=0.460 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~ 66 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFLKADEGRVYF 66 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 478999999999999987654322 3455544
No 341
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=86.78 E-value=0.66 Score=41.72 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=27.4
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+++-|.-||||||.+..+..|-.++|.=|+..
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~t 34 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 68899999999999999999988887655554
No 342
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=86.78 E-value=0.34 Score=45.00 Aligned_cols=31 Identities=26% Similarity=0.454 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 30 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~ 61 (243)
T 1mv5_A 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEE
Confidence 489999999999999987665432 4576655
No 343
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=86.76 E-value=0.41 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.++.|.|+.||||||++..+.-.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl 193 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAV 193 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999887765
No 344
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=86.74 E-value=0.38 Score=41.85 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999987764
No 345
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=86.73 E-value=0.34 Score=45.26 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=18.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+.|.|+.||||||+|.-+.-.
T Consensus 37 ~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999876544
No 346
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.72 E-value=0.44 Score=43.25 Aligned_cols=31 Identities=26% Similarity=0.120 Sum_probs=23.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
..++|.|.+|||||++...+..+ -||.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~---l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKN---FCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH---HTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH---hCCceecH
Confidence 35999999999999987766543 25666654
No 347
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.66 E-value=0.47 Score=56.12 Aligned_cols=34 Identities=21% Similarity=0.328 Sum_probs=30.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
-++|.|++|+|||++++|+...+..+|.-|+||.
T Consensus 734 lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS 767 (1706)
T 3cmw_A 734 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 767 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence 3899999999999999999999888888788874
No 348
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.64 E-value=0.39 Score=41.65 Aligned_cols=22 Identities=18% Similarity=0.309 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 27 ~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 27 LQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999988764
No 349
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.62 E-value=0.4 Score=44.34 Aligned_cols=22 Identities=27% Similarity=0.379 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|.+|+|||+++..++.
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhC
Confidence 5699999999999999988763
No 350
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.61 E-value=0.6 Score=44.75 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.+.+.|+.|+|||+++..+..+....|.=|+.+
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~ 132 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 477889999999999999888766555444433
No 351
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=86.60 E-value=0.37 Score=44.97 Aligned_cols=31 Identities=32% Similarity=0.280 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHH---HHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW---AREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~---A~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-. .-..|-|.+
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~ 64 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGDPEYTVERGEILL 64 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEE
Confidence 3789999999999999877653 223565554
No 352
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=86.58 E-value=0.35 Score=44.52 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=26.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE-----EecCccc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL-----YVPRGRE 229 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL-----~IP~a~~ 229 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+ |+|.-..
T Consensus 36 ~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~i~~v~q~~~ 79 (229)
T 2pze_A 36 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQFSW 79 (229)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECCEEEEEecCCc
Confidence 488999999999999987765432 3566643 5665433
No 353
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=86.47 E-value=0.35 Score=46.18 Aligned_cols=31 Identities=16% Similarity=0.181 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~ 67 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEE
Confidence 389999999999999987665332 3455544
No 354
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.46 E-value=0.29 Score=42.72 Aligned_cols=21 Identities=29% Similarity=0.393 Sum_probs=18.2
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|+.|||||+++..+.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTC
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 459999999999999997664
No 355
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=86.43 E-value=0.64 Score=47.28 Aligned_cols=34 Identities=26% Similarity=0.354 Sum_probs=29.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC-CeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE-GWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n-gWIVL~I 224 (404)
..+++.|..|+||||+.+.+.++...+ |.=|+-|
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllv 135 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVV 135 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 357888999999999999999988887 8877766
No 356
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=86.43 E-value=0.57 Score=45.91 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=19.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-+-|.|+.||||||++..+...-.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 378999999999999877766543
No 357
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=86.42 E-value=0.51 Score=49.03 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
+++.|.+|||||++|.+-+.|...+
T Consensus 25 ~lV~a~aGsGKT~~l~~ri~~l~~~ 49 (647)
T 3lfu_A 25 LLVLAGAGSGKTRVLVHRIAWLMSV 49 (647)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999887765
No 358
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=86.41 E-value=0.7 Score=41.57 Aligned_cols=30 Identities=27% Similarity=0.230 Sum_probs=22.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
..+.|+|..||||||+...+... -|+-|+.
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~---lg~~vid 42 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK---YGAHVVN 42 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH---HCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHh---cCCEEEE
Confidence 34889999999999998776553 2666655
No 359
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=86.34 E-value=0.88 Score=44.77 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=27.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCcc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGR 228 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~ 228 (404)
.++|.|+.|||||++-..+ |..-|+.++.+-+..
T Consensus 7 ~i~i~GptGsGKTtla~~L---a~~l~~~iis~Ds~q 40 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL---ADALPCELISVDSAL 40 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH---HHHSCEEEEEECTTT
T ss_pred EEEEECCCCCCHHHHHHHH---HHHcCCcEEeccchh
Confidence 4899999999999976554 556789999886544
No 360
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=86.31 E-value=0.39 Score=45.42 Aligned_cols=31 Identities=26% Similarity=0.201 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH---HhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA---REEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A---~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.- -..|=|.+
T Consensus 48 ~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~ 81 (267)
T 2zu0_C 48 VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEF 81 (267)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEE
Confidence 48899999999999998776541 13465544
No 361
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=86.24 E-value=0.33 Score=45.11 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~ 58 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIG 58 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999988764
No 362
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=86.23 E-value=0.6 Score=49.38 Aligned_cols=43 Identities=23% Similarity=0.245 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHH
Q 045329 165 SFLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 165 ~tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
+.+++++.|...-- +.+ -.-+.+.|.|+.|||||++|..++-.
T Consensus 26 ~ll~~id~l~~~gv----~~~--l~lp~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 26 PCIDLIDSLRALGV----EQD--LALPAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp HHHHHHHHHHHHSC----CSS--CCCCCEECCCCTTSCHHHHHHHHHSC
T ss_pred HHHHHHHHHHhCCC----CCc--ccCCeEEEECCCCChHHHHHHHHhCC
Confidence 45677777665411 111 11256999999999999999888754
No 363
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=86.22 E-value=0.27 Score=41.81 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=10.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEECCCCC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 4699999999999999988763
No 364
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=86.04 E-value=0.39 Score=45.12 Aligned_cols=31 Identities=29% Similarity=0.350 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-.-.|-|.+
T Consensus 28 ~~~liG~NGsGKSTLlk~l~Gl~~p~G~i~~ 58 (249)
T 2qi9_C 28 ILHLVGPNGAGKSTLLARMAGMTSGKGSIQF 58 (249)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCeEEEE
Confidence 4789999999999999876554221155544
No 365
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=85.95 E-value=0.25 Score=43.57 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=19.9
Q ss_pred ceeEEEECCCCCcHHHHHHHHHH
Q 045329 190 RKQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 190 r~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.+++|.|..|+|||+++..++.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 35799999999999999988754
No 366
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=85.87 E-value=0.44 Score=42.24 Aligned_cols=22 Identities=27% Similarity=0.303 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.+++.
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~ 48 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQ 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999998765
No 367
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=85.86 E-value=0.5 Score=51.75 Aligned_cols=35 Identities=23% Similarity=0.415 Sum_probs=26.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-C-CeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-E-GWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-n-gWIVL~IP~ 226 (404)
-++|.|++|||||+++.+++.+... . .-|++--|.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 3799999999999999999887654 3 344444444
No 368
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=85.84 E-value=0.4 Score=45.12 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=22.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-...|-|.+
T Consensus 48 ~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i 78 (260)
T 2ghi_A 48 TCALVGHTGSGKSTIAKLLYRFYDAEGDIKI 78 (260)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCCeEEEE
Confidence 4899999999999999877654222455544
No 369
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=85.78 E-value=0.4 Score=45.42 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 52 i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 83 (263)
T 2olj_A 52 VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIII 83 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Confidence 488999999999999987665432 3466654
No 370
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=85.77 E-value=0.41 Score=45.18 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 35 ~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~ 66 (266)
T 2yz2_A 35 CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLY 66 (266)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE
Confidence 478999999999999987654322 3455543
No 371
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=85.76 E-value=0.39 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.280 Sum_probs=19.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+.|.|+.|+||||+|.-+.-.
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~ 25 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKS 25 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999887754
No 372
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=85.73 E-value=0.41 Score=45.35 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=23.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH-HhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA-REEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A-~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.- -..|-|.+
T Consensus 39 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~ 70 (266)
T 4g1u_C 39 MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHL 70 (266)
T ss_dssp EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 48899999999999998776532 24566655
No 373
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.72 E-value=0.71 Score=45.86 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=29.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCC-eEEEEecCccc
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEG-WLVLYVPRGRE 229 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ng-WIVL~IP~a~~ 229 (404)
..+++.|..|||||+++..++..+...| -+|++=|.++.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~ 93 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDM 93 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCch
Confidence 3489999999999999988888777654 45555465544
No 374
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=85.71 E-value=0.58 Score=43.78 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=17.0
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
.+.|+|+.|||||++...+.
T Consensus 11 ~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999876654
No 375
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=85.69 E-value=0.39 Score=42.15 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|..|+|||+++.++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998863
No 376
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=85.67 E-value=0.41 Score=45.38 Aligned_cols=31 Identities=32% Similarity=0.387 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 47 ~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~ 78 (271)
T 2ixe_A 47 VTALVGPNGSGKSTVAALLQNLYQPTGGKVLL 78 (271)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEE
Confidence 488999999999999987654422 3455544
No 377
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=85.66 E-value=0.42 Score=42.80 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..++.
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999988753
No 378
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=85.66 E-value=0.52 Score=41.95 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+++|.|..|+|||+++.+++.-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999987753
No 379
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=85.64 E-value=0.42 Score=43.83 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..++.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 5699999999999999998874
No 380
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.64 E-value=0.34 Score=41.65 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~ 43 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKP 43 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999988754
No 381
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.64 E-value=0.46 Score=41.72 Aligned_cols=22 Identities=32% Similarity=0.585 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHhc
Confidence 5799999999999999988764
No 382
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=85.62 E-value=0.48 Score=42.92 Aligned_cols=21 Identities=29% Similarity=0.347 Sum_probs=18.6
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
-+++|.|.+|+|||+++.+.+
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998765
No 383
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=85.57 E-value=0.68 Score=50.93 Aligned_cols=17 Identities=35% Similarity=0.770 Sum_probs=14.6
Q ss_pred eeEEEECCCCCcHHHHH
Q 045329 191 KQIVLDGPLCCGKSITL 207 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L 207 (404)
++++|+|++|||||++.
T Consensus 512 ~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 512 KGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp SCCEEESSTTSSHHHHH
T ss_pred ceEEEecCCCCCchHHH
Confidence 56999999999998653
No 384
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=85.57 E-value=0.51 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.445 Sum_probs=17.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.++|+|++|||||+++..+..
T Consensus 50 ~gvLL~GppGtGKT~Laraia~ 71 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLARAVAG 71 (476)
T ss_dssp SEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999987765543
No 385
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.54 E-value=0.45 Score=41.60 Aligned_cols=22 Identities=32% Similarity=0.600 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++..+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~ 47 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSK 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999987764
No 386
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=85.52 E-value=0.46 Score=43.20 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=14.9
Q ss_pred EEEECCCCCcHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAM 209 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~q 209 (404)
++++|++|||||+....
T Consensus 8 ~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 8 CLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 79999999999997544
No 387
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=85.51 E-value=0.42 Score=45.03 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 43 i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~ 74 (256)
T 1vpl_A 43 IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74 (256)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE
Confidence 388999999999999987654322 3465544
No 388
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=85.46 E-value=0.72 Score=47.14 Aligned_cols=34 Identities=12% Similarity=0.213 Sum_probs=26.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhC--CeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREE--GWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~n--gWIVL~I 224 (404)
.++.|.|++|||||+++.++..+..++ +..++|+
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~ 210 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVL 210 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEE
Confidence 368999999999999999998887653 5444444
No 389
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=85.42 E-value=0.48 Score=47.67 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=25.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|.|.-||||||++..+..+-...|+++...|
T Consensus 50 ~fIt~EG~dGsGKTT~~~~Lae~L~~~gvv~trEP 84 (376)
T 1of1_A 50 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 84 (376)
T ss_dssp EEEEECSSTTSSHHHHHHHHHC----CCEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCC
Confidence 45899999999999999999888777885555454
No 390
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=85.42 E-value=0.6 Score=51.04 Aligned_cols=32 Identities=28% Similarity=0.484 Sum_probs=22.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|+|++|||||+++..+ |..-+.-++.|.
T Consensus 239 ~~vLL~Gp~GtGKTtLaral---a~~l~~~~i~v~ 270 (806)
T 1ypw_A 239 RGILLYGPPGTGKTLIARAV---ANETGAFFFLIN 270 (806)
T ss_dssp CEEEECSCTTSSHHHHHHHH---HHTTTCEEEEEE
T ss_pred CeEEEECcCCCCHHHHHHHH---HHHcCCcEEEEE
Confidence 45999999999999776544 333455455543
No 391
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=85.38 E-value=0.77 Score=42.66 Aligned_cols=22 Identities=27% Similarity=0.296 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++++.|..|+|||+++..+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999998774
No 392
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.28 E-value=0.46 Score=42.14 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999988764
No 393
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=85.26 E-value=0.44 Score=41.49 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
-+++|.|..|+|||+++.++.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998764
No 394
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=85.25 E-value=0.46 Score=42.16 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~ 50 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAK 50 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999998775
No 395
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=85.25 E-value=0.44 Score=44.75 Aligned_cols=36 Identities=31% Similarity=0.471 Sum_probs=24.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeE-----EEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWL-----VLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWI-----VL~IP~a 227 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-| |-|+|.-
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~ 74 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQF 74 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCC
Confidence 478999999999999987654322 34655 4455543
No 396
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=85.23 E-value=0.45 Score=44.49 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=22.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
++++|.|.+|||||+++.++.. ....|-+.|
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g----~~~~v~~~p 32 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN----ANQRVGNWP 32 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT----TSEEEEECT
T ss_pred CEEEEECCCCCCHHHHHHHHHC----CCCCccCCC
Confidence 3589999999999999988743 234454444
No 397
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.18 E-value=0.51 Score=40.62 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|..|+|||+++.++..
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~ 40 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAN 40 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988774
No 398
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.13 E-value=0.51 Score=41.53 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999987764
No 399
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=85.02 E-value=0.54 Score=42.82 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
.++|.|..||||||++..+..+- +++.++..|-
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l--~~~~~~~Ep~ 36 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTY--PEWHVATEPV 36 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC--TTSEEECCCG
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc--CCCeeeecch
Confidence 48999999999999887776543 3677766554
No 400
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=84.99 E-value=0.89 Score=43.80 Aligned_cols=24 Identities=8% Similarity=0.152 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
.|+|+|++|+|||++...+...-.
T Consensus 26 a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 26 ALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCchHHHHHHHHHHHHh
Confidence 499999999999988876665543
No 401
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=84.99 E-value=0.57 Score=42.71 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
=+++|-|..|+|||.++.+.+.
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 4699999999999999998764
No 402
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=84.99 E-value=0.45 Score=47.01 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=25.2
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|.|.-||||||++..+..+-...|+++...|
T Consensus 5 ~fI~~EG~dGsGKTT~~~~La~~L~~~gv~~trEP 39 (331)
T 1e2k_A 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEP 39 (331)
T ss_dssp EEEEECSCTTSSHHHHHHHHTC----CCEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhCCEEEEeCC
Confidence 35899999999999999999888777885544444
No 403
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=84.99 E-value=0.5 Score=44.47 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=22.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|+.||||||++..+.. .-||-++..
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~---~lg~~~~d~ 79 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMAR---SLGYTFFDC 79 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHH---HHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH---hcCCcEEeC
Confidence 489999999999999866644 236765554
No 404
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=84.98 E-value=0.42 Score=47.68 Aligned_cols=31 Identities=26% Similarity=0.485 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
-+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 63 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFEQPDSGEISL 63 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCCcEEEE
Confidence 378999999999999987765432 3566654
No 405
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.97 E-value=0.51 Score=43.83 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..++|.|+.|+|||++...++.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4599999999999999877654
No 406
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=84.97 E-value=0.56 Score=40.90 Aligned_cols=21 Identities=29% Similarity=0.464 Sum_probs=17.7
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+.|+|+.|||||++...+..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 489999999999998876644
No 407
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=84.94 E-value=0.46 Score=45.33 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=23.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~ 80 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEE
Confidence 488999999999999987654422 3466655
No 408
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=84.91 E-value=0.41 Score=42.04 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=18.7
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|+.|+|||+++.++.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998875
No 409
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=84.82 E-value=0.57 Score=48.27 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=18.0
Q ss_pred eEEEECCCCCcHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav 211 (404)
-+.|.|+.||||||++.+++
T Consensus 41 ~~~l~G~nGsGKSTL~~~~l 60 (525)
T 1tf7_A 41 STLVSGTSGTGKTLFSIQFL 60 (525)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHH
Confidence 38999999999999999964
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=84.80 E-value=0.48 Score=47.66 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
-+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i 62 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEE
Confidence 378999999999999987765432 3577655
No 411
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=84.74 E-value=0.43 Score=47.00 Aligned_cols=32 Identities=19% Similarity=0.291 Sum_probs=24.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL~ 223 (404)
.++|.|+.||||||+|.-+..+-. ..|-|.+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 389999999999999988876533 45666654
No 412
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=84.72 E-value=0.54 Score=41.25 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=19.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~ 51 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKT 51 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhh
Confidence 5699999999999999988754
No 413
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=84.59 E-value=0.53 Score=40.96 Aligned_cols=21 Identities=29% Similarity=0.341 Sum_probs=17.8
Q ss_pred ceeEEEECCCCCcHHHHHHHH
Q 045329 190 RKQIVLDGPLCCGKSITLAML 210 (404)
Q Consensus 190 r~r~vL~G~rGsGKS~~L~qa 210 (404)
..+++|.|..|+|||+++..+
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l 40 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVV 40 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHH
Confidence 356999999999999998743
No 414
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.57 E-value=0.62 Score=41.44 Aligned_cols=22 Identities=36% Similarity=0.327 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++..+..
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~ 35 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTK 35 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 415
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=84.57 E-value=0.86 Score=39.65 Aligned_cols=24 Identities=17% Similarity=0.145 Sum_probs=19.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
.+++.++.|+|||++...++....
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~~ 73 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDHL 73 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999998877766543
No 416
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=84.57 E-value=0.51 Score=46.95 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 74 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCccEEEE
Confidence 378999999999999987664432 3566655
No 417
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=84.53 E-value=0.56 Score=41.03 Aligned_cols=22 Identities=23% Similarity=0.172 Sum_probs=19.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999988764
No 418
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=84.51 E-value=0.85 Score=41.78 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGW 219 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngW 219 (404)
-+++.|..||||||.+..+..+-...|.
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~ 32 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETLEQLGI 32 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 4899999999999999999998888886
No 419
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=84.51 E-value=0.51 Score=46.96 Aligned_cols=31 Identities=35% Similarity=0.538 Sum_probs=23.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYF 62 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEcCCCchHHHHHHHHHCCCCCCccEEEE
Confidence 378999999999999987765432 3576655
No 420
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=84.50 E-value=0.54 Score=45.80 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=20.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
++++|.|..|||||++|..++.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 5799999999999999999886
No 421
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=84.49 E-value=0.52 Score=45.70 Aligned_cols=24 Identities=29% Similarity=0.314 Sum_probs=19.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
-+.|.|+.||||||++..+...-.
T Consensus 92 ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCchHHHHHHHHHhhcc
Confidence 478999999999999987766543
No 422
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.49 E-value=0.61 Score=43.58 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|.+|||||+++.++.
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~ 26 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALT 26 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999885
No 423
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=84.35 E-value=0.52 Score=47.04 Aligned_cols=31 Identities=32% Similarity=0.599 Sum_probs=23.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
-+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI 62 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHcCCCCCccEEEE
Confidence 378999999999999987765432 3466655
No 424
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=84.25 E-value=0.45 Score=47.15 Aligned_cols=31 Identities=26% Similarity=0.543 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~ 59 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCccHHHHHHHHHcCCCCCCcEEEE
Confidence 378999999999999987765432 3576665
No 425
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=84.23 E-value=0.78 Score=49.27 Aligned_cols=33 Identities=15% Similarity=0.160 Sum_probs=23.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|++|||||.+...+.......+.-+++|
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i 555 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRI 555 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEE
Confidence 499999999999988776666655444333444
No 426
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=84.21 E-value=0.53 Score=46.89 Aligned_cols=31 Identities=26% Similarity=0.309 Sum_probs=23.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 62 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYF 62 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 378999999999999987665432 3576665
No 427
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=84.20 E-value=0.54 Score=43.77 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|.+|||||+++..+.
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~ 24 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALT 24 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998874
No 428
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=84.12 E-value=0.89 Score=44.22 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=23.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEG 218 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ng 218 (404)
..+.|.|++|+|||+++..+.......|
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~ 84 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREG 84 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 4589999999999999999887766544
No 429
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=84.05 E-value=0.54 Score=46.99 Aligned_cols=31 Identities=39% Similarity=0.640 Sum_probs=23.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 70 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYF 70 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCChHHHHHHHHHcCCCCCceEEEE
Confidence 378999999999999987665432 3576665
No 430
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=84.02 E-value=0.43 Score=48.93 Aligned_cols=33 Identities=21% Similarity=0.249 Sum_probs=26.4
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHh-CC-e-EEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWARE-EG-W-LVLY 223 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~-ng-W-IVL~ 223 (404)
.++.|.|+.||||||+|.-+.-++.. .| - |.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vd 174 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYIN 174 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEc
Confidence 45899999999999999999888764 46 3 5554
No 431
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=83.93 E-value=0.89 Score=42.56 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=23.2
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEE
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLV 221 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIV 221 (404)
.+++|+-|||||+.|.+.+..+...|--|
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kv 59 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKV 59 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCce
Confidence 68999999999998888887776655333
No 432
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=83.88 E-value=0.69 Score=46.12 Aligned_cols=22 Identities=27% Similarity=0.290 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+.|.|+.|+|||++|..+.-.
T Consensus 217 ~~~lvG~sG~GKSTLln~L~g~ 238 (358)
T 2rcn_A 217 ISIFAGQSGVGKSSLLNALLGL 238 (358)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCccHHHHHHHHhcc
Confidence 4899999999999999888743
No 433
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=83.85 E-value=1 Score=39.89 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=20.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|+|..|||||++...+. ..-|+-++.
T Consensus 5 ~i~i~G~~gsGkst~~~~l~---~~~g~~~~~ 33 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVA---SELSMIYVD 33 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHH---HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---HhcCCceec
Confidence 38999999999999876553 334555444
No 434
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=83.82 E-value=0.41 Score=41.04 Aligned_cols=21 Identities=24% Similarity=0.210 Sum_probs=18.5
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.++++.|..|+|||+++.++.
T Consensus 23 ~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 23 IRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999998763
No 435
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=83.80 E-value=0.6 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.247 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
++.|.|+.||||||+|.++.-+..-.
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 58999999999999999888886543
No 436
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=83.62 E-value=0.6 Score=44.75 Aligned_cols=30 Identities=27% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.|+|||++|..+. ... ..|-|.+
T Consensus 167 i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 167 ICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp EEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 47899999999999999988 432 3465555
No 437
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=83.62 E-value=0.91 Score=46.21 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.+++.|+.||||||++..+..+...+|.=|+.+
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 477889999999999999998877776655554
No 438
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=83.60 E-value=0.62 Score=48.46 Aligned_cols=32 Identities=16% Similarity=0.244 Sum_probs=22.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|++|||||+++..+.... ....+.+.+
T Consensus 110 ~vll~Gp~GtGKTtlar~ia~~l-~~~~~~i~~ 141 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLAKSIAKSL-GRKFVRISL 141 (543)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHH-TCEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHhc-CCCeEEEEe
Confidence 48999999999998776554443 334444443
No 439
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=83.55 E-value=0.58 Score=44.74 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=20.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.|||||++|..+.-... ..|-|.+
T Consensus 171 iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~ 202 (301)
T 1u0l_A 171 ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 202 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred eEEEECCCCCcHHHHHHHhcccccccccceec
Confidence 478999999999999988875433 2355554
No 440
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=83.52 E-value=0.62 Score=44.12 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=22.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.--..|-|.+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~ 62 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLLPYSGNIFI 62 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSCCEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCcEEEE
Confidence 4889999999999999876543233455544
No 441
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=83.45 E-value=0.99 Score=46.77 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=27.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH-HhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA-REEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A-~~ngWIVL~IP~ 226 (404)
+.+|.|++|+|||+++.+++... ...+-+++++--
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V~~~i 188 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGISVFAGV 188 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcEEEEeee
Confidence 58999999999999999998874 445666666533
No 442
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=83.45 E-value=0.46 Score=49.41 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh-CCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE-EGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL 222 (404)
.++|.|+.||||||+|..++.+-.. .|-|.+
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 3899999999999999887765432 354444
No 443
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.30 E-value=1.7 Score=45.40 Aligned_cols=68 Identities=12% Similarity=0.167 Sum_probs=41.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHH-HHH--hCCeEEEEecCcccccccCeeecC-CCC--CCccCHHHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH-WAR--EEGWLVLYVPRGREWTHGGYFYKN-PQT--GLWDTPLQAENVLKDFIK 260 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~-~A~--~ngWIVL~IP~a~~wvng~~~y~~-~~~--g~ydQP~~A~~~Lk~fl~ 260 (404)
+.+++.|..|||||++|..++. .+. .-+-+-+++=++..-.- ..|.. ++. ...+.|..+.+.|+.+..
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el--~~~~~lPhl~~~Vvtd~~~a~~~L~~~~~ 241 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLEL--SVYEGIPHLLTEVVTDMKDAANALRWCVN 241 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGG--GGGTTCTTBSSSCBCSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhh--hhhccCCcccceeecCHHHHHHHHHHHHH
Confidence 4689999999999999988775 333 23666666655443100 11221 221 245677777777765443
No 444
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=83.27 E-value=0.43 Score=49.55 Aligned_cols=23 Identities=26% Similarity=0.192 Sum_probs=18.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|+|++|||||++...+....
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l 65 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAF 65 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGB
T ss_pred eeEeecCchHHHHHHHHHHHHHH
Confidence 48999999999998776555444
No 445
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=83.18 E-value=1 Score=42.02 Aligned_cols=29 Identities=28% Similarity=0.373 Sum_probs=25.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWL 220 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWI 220 (404)
-++|.|..|||||+.+..+..+-...|.=
T Consensus 29 ~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 29 FIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp EEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 48999999999999999998887777754
No 446
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=83.16 E-value=0.65 Score=45.58 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
-.+|+|+.|+|||++|- +++||
T Consensus 27 l~vi~G~NGaGKT~ile-AI~~~ 48 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFE-AVFFA 48 (371)
T ss_dssp EEEEEECTTSSHHHHHH-HHHHH
T ss_pred eEEEECCCCCCHHHHHH-HHHHH
Confidence 37999999999999974 66664
No 447
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.15 E-value=0.69 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=18.9
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|.+|||||+++.++.
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~ 24 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLIT 24 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999886
No 448
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=83.07 E-value=0.82 Score=41.62 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=20.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~ 223 (404)
.++|.|++||||+|.-..+. ..-|+..|.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La---~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA---KEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH---HHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHH---HHHCCeEEc
Confidence 47899999999998655544 334665443
No 449
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=83.03 E-value=1 Score=41.39 Aligned_cols=33 Identities=15% Similarity=0.084 Sum_probs=22.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
+++|.|+.|+|||.+...++... .+.+++-+|.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~--~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL--STPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS--CSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc--CCCEEEEeCC
Confidence 48999999999999876655432 3444444443
No 450
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=82.93 E-value=0.56 Score=45.10 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=25.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeE-----EEEecCc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWL-----VLYVPRG 227 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWI-----VL~IP~a 227 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-| |-|+|.-
T Consensus 66 ~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~i~~v~Q~ 107 (290)
T 2bbs_A 66 LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGRISFCSQN 107 (290)
T ss_dssp EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCSCEEEECSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEEEEEeCC
Confidence 488999999999999987665432 34555 3355554
No 451
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=82.93 E-value=1.6 Score=41.87 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=20.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE 216 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ 216 (404)
-+.|.|+.||||||++..+...-..
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 4889999999999998777765543
No 452
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=82.89 E-value=0.48 Score=47.55 Aligned_cols=30 Identities=20% Similarity=0.188 Sum_probs=23.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-++|.|.+|||||++...+. ...||.+|..
T Consensus 260 lIil~G~pGSGKSTla~~L~---~~~~~~~i~~ 289 (416)
T 3zvl_A 260 VVVAVGFPGAGKSTFIQEHL---VSAGYVHVNR 289 (416)
T ss_dssp EEEEESCTTSSHHHHHHHHT---GGGTCEECCG
T ss_pred EEEEECCCCCCHHHHHHHHH---HhcCcEEEcc
Confidence 48999999999999887654 3457877654
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=82.80 E-value=0.58 Score=47.06 Aligned_cols=31 Identities=26% Similarity=0.335 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-...|-|.+
T Consensus 49 ~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i 79 (390)
T 3gd7_A 49 RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQI 79 (390)
T ss_dssp EEEEEESTTSSHHHHHHHHHTCSEEEEEEEE
T ss_pred EEEEECCCCChHHHHHHHHhCCCCCCeEEEE
Confidence 4899999999999999877654334565555
No 454
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=82.77 E-value=0.31 Score=42.03 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=5.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
-+++|.|..|+|||+++..+..-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999887754
No 455
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=82.72 E-value=0.76 Score=42.27 Aligned_cols=21 Identities=33% Similarity=0.363 Sum_probs=17.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+.|+|..|||||++...+..
T Consensus 24 iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999998776654
No 456
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=82.58 E-value=0.82 Score=44.86 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=24.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH---hCCeEEEEe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR---EEGWLVLYV 224 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~---~ngWIVL~I 224 (404)
..++|.|+.|+|||++.+.++..+. ..+++.+..
T Consensus 148 ~gvli~G~sG~GKStlal~l~~~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLINKNHLFVGDDAIEIYR 184 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTTTCEEEEEEEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHcCCEEEeCCEEEEEE
Confidence 4699999999999999888776332 234455544
No 457
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=82.48 E-value=1.6 Score=46.70 Aligned_cols=25 Identities=20% Similarity=0.108 Sum_probs=19.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
+.++|+|++|||||+++..+.....
T Consensus 208 ~~vlL~G~~GtGKT~la~~la~~l~ 232 (758)
T 1r6b_X 208 NNPLLVGESGVGKTAIAEGLAWRIV 232 (758)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEcCCCCCHHHHHHHHHHHHH
Confidence 3489999999999998876665543
No 458
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=82.43 E-value=0.36 Score=44.68 Aligned_cols=33 Identities=33% Similarity=0.628 Sum_probs=25.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEec
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVP 225 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP 225 (404)
..++|.|..||||||+...+..+- .+|.++..|
T Consensus 25 ~~I~ieG~~GsGKST~~~~L~~~l--~~~~~i~ep 57 (263)
T 1p5z_B 25 KKISIEGNIAAGKSTFVNILKQLC--EDWEVVPEP 57 (263)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGC--TTEEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc--CCCEEEecc
Confidence 458999999999999987776542 357776554
No 459
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=82.41 E-value=0.92 Score=45.00 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=22.3
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCe
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGW 219 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngW 219 (404)
.|++|-|..||||||++.|+- .-+..||
T Consensus 34 ~killlG~~~SGKST~~kq~~-i~~~~~~ 61 (362)
T 1zcb_A 34 VKILLLGAGESGKSTFLKQMR-IIHGQDF 61 (362)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-HHHSCCC
T ss_pred cEEEEECCCCCcHHHHHHHHH-HHhCCCC
Confidence 579999999999999999973 2334565
No 460
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=82.27 E-value=0.76 Score=45.99 Aligned_cols=30 Identities=23% Similarity=0.331 Sum_probs=22.6
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEE
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVL 222 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL 222 (404)
..++|.|++|||||+++..+... ..|-++.
T Consensus 170 ~~i~l~G~~GsGKSTl~~~l~~~--~~g~~~~ 199 (377)
T 1svm_A 170 RYWLFKGPIDSGKTTLAAALLEL--CGGKALN 199 (377)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH--HCCEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHhh--cCCcEEE
Confidence 35899999999999998877653 3554443
No 461
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=82.25 E-value=0.48 Score=46.91 Aligned_cols=31 Identities=19% Similarity=0.298 Sum_probs=23.3
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i 64 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLDVPSTGELYF 64 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Confidence 378999999999999987664432 3576655
No 462
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=82.11 E-value=0.5 Score=46.06 Aligned_cols=32 Identities=16% Similarity=0.315 Sum_probs=23.9
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVLY 223 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL~ 223 (404)
.++|.|+.||||||+|.-+..+-. ..|-|.+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 389999999999999987776532 34655553
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=82.05 E-value=1.7 Score=42.84 Aligned_cols=37 Identities=24% Similarity=0.230 Sum_probs=27.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCcccc
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGREW 230 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~~w 230 (404)
+-++|.|+.|||||++...+ |..-+..|+..-+.+.+
T Consensus 11 ~~i~i~GptgsGKt~la~~L---a~~~~~~iis~Ds~qvY 47 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIEL---RKILPVELISVDSALIY 47 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHH---HHHSCEEEEECCTTTTB
T ss_pred cEEEEECCCccCHHHHHHHH---HHhCCCcEEeccccccc
Confidence 34899999999999987655 55678888887665443
No 464
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.88 E-value=1.1 Score=48.10 Aligned_cols=22 Identities=27% Similarity=0.173 Sum_probs=17.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.++|+|++|||||++...+...
T Consensus 203 ~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 203 NPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp EEEEESCTTTTTHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999866544433
No 465
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=81.88 E-value=0.43 Score=42.29 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.7
Q ss_pred ceeEEEECCCCCcHHHHHHHHHH
Q 045329 190 RKQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 190 r~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.-+++|.|..|||||+++..++.
T Consensus 15 ~~ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 15 QFKLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEEEECTTSSHHHHHTTBHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999998554
No 466
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=81.85 E-value=0.64 Score=44.55 Aligned_cols=21 Identities=24% Similarity=0.275 Sum_probs=18.5
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.++|.|+.|+|||++|..+..
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 489999999999999999653
No 467
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=81.83 E-value=0.7 Score=43.14 Aligned_cols=21 Identities=24% Similarity=0.252 Sum_probs=18.4
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
-+++|.|..|+|||+++..+.
T Consensus 9 ~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 9 FTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 359999999999999998864
No 468
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=81.82 E-value=0.86 Score=41.37 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=18.1
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..+.|+|..|||||++...+..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999998876543
No 469
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=81.63 E-value=0.8 Score=43.00 Aligned_cols=21 Identities=29% Similarity=0.233 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
.+++|.|.+|||||+++..+.
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~ 24 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLT 24 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999999874
No 470
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.63 E-value=0.92 Score=42.13 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=19.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE 217 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n 217 (404)
-+++.|..||||||....+..+-...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 48999999999999999888876655
No 471
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=81.47 E-value=1.1 Score=41.22 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=27.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
-+++.|..|||||+....+..+-.. ...++..|.
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~~ep~ 40 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP-NCKLLKFPE 40 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS-SEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc-cceEEEecC
Confidence 4899999999999999888876554 456777773
No 472
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=81.46 E-value=1.1 Score=43.18 Aligned_cols=22 Identities=14% Similarity=-0.007 Sum_probs=17.8
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+.|+++|++|+||+++...+..
T Consensus 19 ~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 19 ISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5699999999999887655544
No 473
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.33 E-value=0.82 Score=46.52 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=21.6
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHh
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWARE 216 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ 216 (404)
++.|.|+.||||||+|..+.-+...
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcccCC
Confidence 5899999999999999888877643
No 474
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=81.21 E-value=0.88 Score=44.26 Aligned_cols=22 Identities=36% Similarity=0.382 Sum_probs=19.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
+++++.|.+|+|||++|..++-
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999988764
No 475
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=81.20 E-value=0.75 Score=40.38 Aligned_cols=21 Identities=24% Similarity=0.260 Sum_probs=18.8
Q ss_pred eeEEEECCCCCcHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLV 211 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav 211 (404)
-+++|.|..|+|||+++..++
T Consensus 12 ~ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 12 YKICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEEECCTTSSHHHHHCBCT
T ss_pred cEEEEECCCCCCHHHHHHHHh
Confidence 469999999999999998766
No 476
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=81.09 E-value=0.99 Score=43.71 Aligned_cols=22 Identities=23% Similarity=0.120 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAR 215 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~ 215 (404)
.+|.|+.|+|||++|- ++.||.
T Consensus 26 ~~i~G~NGsGKS~lle-Ai~~~l 47 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLLD-AILVGL 47 (339)
T ss_dssp EEEECCTTSSHHHHHH-HHHHHH
T ss_pred EEEECCCCCCHHHHHH-HHHHHh
Confidence 6899999999999974 445544
No 477
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=81.02 E-value=0.88 Score=45.71 Aligned_cols=22 Identities=18% Similarity=0.320 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+++|.|++|||||+++..++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g 202 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILN 202 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhC
Confidence 4699999999999999988764
No 478
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=80.86 E-value=0.97 Score=43.32 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..++|.|.+|+|||+++.+++.
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999874
No 479
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=80.79 E-value=0.97 Score=49.41 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=22.8
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
.++|+|++|||||++...+.......+.-+++|
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 599999999999986665555554444334444
No 480
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=80.78 E-value=0.97 Score=43.16 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..+.|.|.+|+|||+++..++.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHC
Confidence 3589999999999999999874
No 481
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=80.76 E-value=1.4 Score=41.89 Aligned_cols=35 Identities=9% Similarity=-0.032 Sum_probs=31.0
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecC
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~ 226 (404)
-++|.|.+|+||+++..|.+.-+.++|.-++||--
T Consensus 23 ~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~ 57 (260)
T 3bs4_A 23 ILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI 57 (260)
T ss_dssp EEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 47888999999998889999999999999999843
No 482
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=80.75 E-value=1.2 Score=45.25 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=18.8
Q ss_pred eEEEECCCCCcHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~ 212 (404)
.+.|.|+.|+||||+|..+.-
T Consensus 71 ~valvG~nGaGKSTLln~L~G 91 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRG 91 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 588999999999999988775
No 483
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=80.68 E-value=0.95 Score=43.21 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~ 213 (404)
.+++|.|.+|+|||+++.+++.-
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999987653
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=80.57 E-value=0.88 Score=45.51 Aligned_cols=31 Identities=23% Similarity=0.224 Sum_probs=22.4
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHH-hCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAR-EEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~-~ngWIVL 222 (404)
-+.|.|+.||||||+|.-+.-.-. ..|-|.+
T Consensus 56 i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i 87 (366)
T 3tui_C 56 IYGVIGASGAGKSTLIRCVNLLERPTEGSVLV 87 (366)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEE
T ss_pred EEEEEcCCCchHHHHHHHHhcCCCCCceEEEE
Confidence 378999999999999876654432 3465554
No 485
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=80.16 E-value=0.8 Score=44.48 Aligned_cols=31 Identities=29% Similarity=0.484 Sum_probs=22.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH-HhCCeEEE
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA-REEGWLVL 222 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A-~~ngWIVL 222 (404)
.+.|.|+.||||||+|.-+.-+- -..|-|.+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i 113 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFYDISSGCIRI 113 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEE
T ss_pred EEEEECCCCchHHHHHHHHHcCCCCCCcEEEE
Confidence 48999999999999997665432 23455543
No 486
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=80.16 E-value=0.96 Score=43.26 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.5
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
..+.|.|.+|+|||+++.+++.
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4589999999999999998873
No 487
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=80.05 E-value=0.74 Score=47.65 Aligned_cols=34 Identities=6% Similarity=0.035 Sum_probs=28.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhC----CeEEEEec
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREE----GWLVLYVP 225 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~n----gWIVL~IP 225 (404)
|..|.|.+|+|||++|.|+..++..| |.+++|+-
T Consensus 154 r~~Ifgg~G~GKt~Ll~~Ia~~~~~n~~~~~~~~V~~~ 191 (469)
T 2c61_A 154 KLPIFSASGLPHNEIALQIARQASVPGSESAFAVVFAA 191 (469)
T ss_dssp BCCEEECTTSCHHHHHHHHHHHCBCTTCSSCEEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhccCCCCcEEEEEE
Confidence 57888999999999999999988764 46777763
No 488
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=79.98 E-value=0.75 Score=49.62 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.5
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCccc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGRE 229 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~~ 229 (404)
.++|+|.||.|||++|..+++.+..+. +|.-|+...
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~~~~~--~vtAP~~~a 229 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRIAGRA--IVTAPAKAS 229 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSSSCE--EEECSSCCS
T ss_pred eEEEecCCCCCHHHHHHHHHHHHHhCc--EEECCCHHH
Confidence 479999999999999999999886554 555666544
No 489
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=79.74 E-value=0.98 Score=47.39 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.2
Q ss_pred eEEEECCCCCcHHHHHHHHHHHH
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWA 214 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A 214 (404)
.++|+|++|||||+++..+...-
T Consensus 62 ~vll~Gp~GtGKTtlar~ia~~l 84 (604)
T 3k1j_A 62 HVLLIGEPGTGKSMLGQAMAELL 84 (604)
T ss_dssp CEEEECCTTSSHHHHHHHHHHTS
T ss_pred EEEEEeCCCCCHHHHHHHHhccC
Confidence 48999999999999887766644
No 490
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=79.67 E-value=1.1 Score=44.37 Aligned_cols=36 Identities=31% Similarity=0.242 Sum_probs=27.7
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHhCC-eEEEEecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWAREEG-WLVLYVPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~ng-WIVL~IP~ 226 (404)
..++|-|.-||||||++..+..+-...+ +++..-|.
T Consensus 8 ~fI~~EG~dGaGKTT~~~~La~~L~~~~~v~~trEPg 44 (334)
T 1p6x_A 8 VRIYLDGVYGIGKSTTGRVMASAASGGSPTLYFPEPM 44 (334)
T ss_dssp EEEEEECSTTSSHHHHHHHHHSGGGCSSCEEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccCCcEEEEeCCC
Confidence 4689999999999999998888765555 55555554
No 491
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=79.18 E-value=1.8 Score=39.12 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=24.1
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
-+++-|..||||||.+..+..+-. +|.=|+..
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~-~~~~v~~~ 35 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLV-KDYDVIMT 35 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-TTSCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH-CCCCEEEe
Confidence 378899999999999887777653 46644444
No 492
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=79.15 E-value=2.1 Score=42.18 Aligned_cols=34 Identities=26% Similarity=0.269 Sum_probs=25.7
Q ss_pred eEEEECCCCCcHHHHHHHHHHHHHhCCeEEEEecCcc
Q 045329 192 QIVLDGPLCCGKSITLAMLVHWAREEGWLVLYVPRGR 228 (404)
Q Consensus 192 r~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~IP~a~ 228 (404)
-++|.|+.|||||++...+ |..-+..||..-+.+
T Consensus 5 ~i~i~GptgsGKt~la~~L---a~~~~~~iis~Ds~Q 38 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVML---AKRLNGEVISGDSMQ 38 (322)
T ss_dssp EEEEECCTTSCHHHHHHHH---HHTTTEEEEECCGGG
T ss_pred EEEEECCCcCCHHHHHHHH---HHhCccceeecCccc
Confidence 4899999999999987655 455677777765543
No 493
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=80.22 E-value=0.4 Score=41.82 Aligned_cols=22 Identities=23% Similarity=0.199 Sum_probs=19.0
Q ss_pred eeEEEECCCCCcHHHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAMLVH 212 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~ 212 (404)
-+++|.|..|+|||+++.++..
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3599999999999999987764
No 494
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=78.87 E-value=1.5 Score=38.98 Aligned_cols=32 Identities=19% Similarity=0.137 Sum_probs=26.3
Q ss_pred EEEECCCCCcHHHHHHHHHHHHHhCCeEEEEe
Q 045329 193 IVLDGPLCCGKSITLAMLVHWAREEGWLVLYV 224 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~A~~ngWIVL~I 224 (404)
+.+.|+-|+|||++.+++..+..+.|.=|+-|
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 56699999999999999888777777666665
No 495
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=78.83 E-value=2 Score=44.00 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=33.9
Q ss_pred hHHHHHHHHHHhcCCCccCCCCCccceeEEEECCCCCcHHHHHHHHHHHHHh--CCeEEEEe
Q 045329 165 SFLDIRDNFRRIVDPSLQSTNGPKIRKQIVLDGPLCCGKSITLAMLVHWARE--EGWLVLYV 224 (404)
Q Consensus 165 ~tleLi~~L~~~~d~~~~std~~~~r~r~vL~G~rGsGKS~~L~qav~~A~~--ngWIVL~I 224 (404)
..+.+|+.|--+ + .. .|..|.|++|+|||++|.++...+.. .+..++++
T Consensus 161 tGiraID~l~Pi---------g-rG-QR~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~ 211 (427)
T 3l0o_A 161 YSTRLIDLFAPI---------G-KG-QRGMIVAPPKAGKTTILKEIANGIAENHPDTIRIIL 211 (427)
T ss_dssp HHHHHHHHHSCC---------B-TT-CEEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEE
T ss_pred ccchhhhhcccc---------c-CC-ceEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEE
Confidence 456667766432 1 11 36899999999999999888877654 36555554
No 496
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=78.82 E-value=1.1 Score=41.68 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=27.9
Q ss_pred eeEEEECCCCCcHHHHHHHHHHHHHh-CCeEEEE---ecC
Q 045329 191 KQIVLDGPLCCGKSITLAMLVHWARE-EGWLVLY---VPR 226 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qav~~A~~-ngWIVL~---IP~ 226 (404)
.-+++.|..|||||+....+..+-.. .|.=|+. .|.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~ 61 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPG 61 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCC
Confidence 34899999999999999998888766 6654444 565
No 497
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=78.77 E-value=1.2 Score=45.68 Aligned_cols=20 Identities=35% Similarity=0.469 Sum_probs=16.5
Q ss_pred eeEEEECCCCCcHHHHHHHH
Q 045329 191 KQIVLDGPLCCGKSITLAML 210 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L~qa 210 (404)
..++|+|++|||||++...+
T Consensus 51 ~~iLl~GppGtGKT~lar~l 70 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIARRL 70 (444)
T ss_dssp CCEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEcCCCCCHHHHHHHH
Confidence 45999999999999876544
No 498
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=78.75 E-value=1 Score=45.02 Aligned_cols=35 Identities=31% Similarity=0.285 Sum_probs=26.0
Q ss_pred eEEEECCCCCcHHHH-HHHHHHHHHhCCe-EEEEecC
Q 045329 192 QIVLDGPLCCGKSIT-LAMLVHWAREEGW-LVLYVPR 226 (404)
Q Consensus 192 r~vL~G~rGsGKS~~-L~qav~~A~~ngW-IVL~IP~ 226 (404)
.+++.|+.|||||.+ +..++..+..+|. +++-+|.
T Consensus 4 ~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt 40 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPT 40 (431)
T ss_dssp EEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcH
Confidence 379999999999998 5777767777764 4444454
No 499
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=78.70 E-value=0.69 Score=45.87 Aligned_cols=38 Identities=26% Similarity=0.367 Sum_probs=30.2
Q ss_pred eeEEEECCCCCcHHHHH-HHHHHHHHhCCeEEEEecCccc
Q 045329 191 KQIVLDGPLCCGKSITL-AMLVHWAREEGWLVLYVPRGRE 229 (404)
Q Consensus 191 ~r~vL~G~rGsGKS~~L-~qav~~A~~ngWIVL~IP~a~~ 229 (404)
..++|.|.-|+||||++ ..+..+-...|- |++++.+-.
T Consensus 13 ~~I~iEG~~GaGKTT~~~~~L~~~l~~~g~-vv~trEPgg 51 (341)
T 1osn_A 13 LRIYLDGAYGIGKTTAAEEFLHHFAITPNR-ILLIGEPLS 51 (341)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTSGGG-EEEECCCHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHhhCCc-EEEEeCCCc
Confidence 56899999999999999 777777666663 777777755
No 500
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=78.68 E-value=1 Score=46.06 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHHHH
Q 045329 193 IVLDGPLCCGKSITLAMLVHW 213 (404)
Q Consensus 193 ~vL~G~rGsGKS~~L~qav~~ 213 (404)
+.|.|+.|+||||+|.-+.-.
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999887643
Done!