BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045333
         (225 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
          Cys2his2 Zinc Finger Induces Structural Rearrangements
          Of Typical Dna Base Determinant Positions
 pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
          From Arabidopsis Thaliana Superman Protein
          Length = 39

 Score = 64.7 bits (156), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 26/28 (92%), Positives = 28/28 (100%)

Query: 66 WPPRSYTCTFCRREFRSAQALGGHMNVH 93
          WPPRSYTC+FC+REFRSAQALGGHMNVH
Sbjct: 2  WPPRSYTCSFCKREFRSAQALGGHMNVH 29


>pdb|3K1Q|C Chain C, Backbone Model Of An Aquareovirus Virion By Cryo-Electron
           Microscopy And Bioinformatics
          Length = 1196

 Score = 30.4 bits (67), Expect = 0.90,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 68  PRSYTCTFCRREFRSAQALGGHMNVHRRDRA 98
           P SY C  C   F +  AL  H+    RD A
Sbjct: 96  PSSYVCNVCNARFSTMSALSEHLRSDHRDDA 126


>pdb|3IYL|X Chain X, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
 pdb|3IYL|Y Chain Y, Atomic Cryoem Structure Of A Nonenveloped Virus Suggests
           How Penetration Protein Is Primed For Cell Entry
          Length = 1214

 Score = 30.0 bits (66), Expect = 0.97,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 68  PRSYTCTFCRREFRSAQALGGHMNVHRRDRA 98
           P SY C  C   F +  AL  H+    RD A
Sbjct: 114 PSSYVCNVCNARFSTMSALSEHLRSDHRDDA 144


>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
          Zinc Finger Protein 406
          Length = 36

 Score = 28.1 bits (61), Expect = 3.8,   Method: Composition-based stats.
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 71 YTCTFCRREFRSAQALGGHMNVHRRDR 97
          +TC +C + F+   +L  H+ +H  ++
Sbjct: 10 FTCEYCNKVFKFKHSLQAHLRIHTNEK 36


>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
          Domains Of Human Zinc Finger Protein 297b
          Length = 110

 Score = 28.1 bits (61), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 69 RSYTCTFCRREFRSAQALGGHMNVH 93
          R Y C  C ++F+    L GHM +H
Sbjct: 36 RPYGCGVCGKKFKMKHHLVGHMKIH 60


>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
          Length = 30

 Score = 27.3 bits (59), Expect = 6.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 69 RSYTCTFCRREFRSAQALGGHMNVHRRDR 97
          + Y C  C+R+F    AL  H+ +H  ++
Sbjct: 2  KPYVCIHCQRQFADPGALQRHVRIHTGEK 30


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,201,352
Number of Sequences: 62578
Number of extensions: 218792
Number of successful extensions: 577
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 10
length of query: 225
length of database: 14,973,337
effective HSP length: 95
effective length of query: 130
effective length of database: 9,028,427
effective search space: 1173695510
effective search space used: 1173695510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)