BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045334
         (80 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q54ID0|COX17_DICDI Cytochrome c oxidase copper chaperone OS=Dictyostelium discoideum
          GN=cox17 PE=3 SV=1
          Length = 60

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 44/55 (80%), Gaps = 1/55 (1%)

Query: 27 TKSGTE-SKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80
          T + TE + PKKK+CCACPETKK+RDECIV +GEE CA  IE H+ CLR EGF+V
Sbjct: 6  TNTTTEVAAPKKKMCCACPETKKVRDECIVANGEEKCAALIELHKVCLRKEGFDV 60


>sp|Q6J3Q7|COX17_CANFA Cytochrome c oxidase copper chaperone OS=Canis familiaris
          GN=COX17 PE=3 SV=3
          Length = 63

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 37/52 (71%)

Query: 29 SGTESKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80
          S ++ K   K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct: 12 SDSQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63


>sp|Q14061|COX17_HUMAN Cytochrome c oxidase copper chaperone OS=Homo sapiens GN=COX17
          PE=1 SV=2
          Length = 63

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 24 LEVTKSGTESKPKK--KICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80
          ++   +  ES+ KK  K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct: 5  VDSNPAPPESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63


>sp|P81045|COX17_PIG Cytochrome c oxidase copper chaperone OS=Sus scrofa GN=COX17 PE=1
          SV=1
          Length = 62

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 38/51 (74%), Gaps = 2/51 (3%)

Query: 32 ESKPKK--KICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80
          ES+ KK  K CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct: 12 ESQEKKPLKPCCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 62


>sp|P56394|COX17_MOUSE Cytochrome c oxidase copper chaperone OS=Mus musculus GN=Cox17
          PE=3 SV=2
          Length = 63

 Score = 62.4 bits (150), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 31/49 (63%), Positives = 36/49 (73%), Gaps = 1/49 (2%)

Query: 32 ESKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80
          E KP K  CCACPETKK RD CI+E GEE C   IEAH++C+RA GF +
Sbjct: 16 EKKPLKP-CCACPETKKARDACIIEKGEEHCGHLIEAHKECMRALGFKI 63


>sp|Q9P7Z7|COX17_SCHPO Cytochrome c oxidase copper chaperone OS=Schizosaccharomyces
          pombe (strain 972 / ATCC 24843) GN=cox17 PE=3 SV=1
          Length = 70

 Score = 53.9 bits (128), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 17 GSQPNQGLEVTKSG-TESKPKKKICCACPETKKLRDECIVE--HGEEACAKWIEAHRKCL 73
           ++P+   +V++     S+ K K CCACPETK+ RD C+++  +G   CAK IEAH+KC+
Sbjct: 4  STEPSTATKVSEPAPIASEEKPKPCCACPETKQARDACMLQSSNGPIECAKLIEAHKKCM 63

Query: 74 RAEGFNV 80
             G+ V
Sbjct: 64 AQYGYEV 70


>sp|Q12287|COX17_YEAST Cytochrome c oxidase copper chaperone OS=Saccharomyces cerevisiae
          (strain ATCC 204508 / S288c) GN=COX17 PE=1 SV=3
          Length = 69

 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 32 ESKPKKKICCACPETKKLRDECIVEHGE--EACAKWIEAHRKCLRAEGFNV 80
          E + K K CC C   K+ RD CI+ +G+  E C ++IE +++C++  GF V
Sbjct: 15 ECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMKGYGFEV 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.131    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,493,780
Number of Sequences: 539616
Number of extensions: 1091897
Number of successful extensions: 1786
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1776
Number of HSP's gapped (non-prelim): 11
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)