Query 045334
Match_columns 80
No_of_seqs 102 out of 180
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:39:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045334.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045334hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1u96_A Cytochrome C oxidase co 100.0 1.2E-31 4E-36 171.8 5.1 49 32-80 15-65 (69)
2 2l0y_B HCG2020266, COX17 cytoc 100.0 2.2E-32 7.4E-37 174.5 -2.8 48 33-80 20-67 (67)
3 1ei0_A P8MTCP1; helix-turn-hel 87.2 0.29 9.8E-06 27.1 1.6 33 43-75 3-37 (38)
4 1hp8_A HU-P8; leukemia, cystei 85.3 0.68 2.3E-05 28.8 2.8 34 43-76 7-42 (68)
5 2lql_A Coiled-coil-helix-coile 76.2 3 0.0001 27.5 3.6 37 42-78 36-77 (113)
6 2lqt_A Coiled-coil-helix-coile 71.5 1.4 4.9E-05 28.6 1.2 32 43-74 16-49 (85)
7 2p22_B Vacuolar protein sortin 42.4 19 0.00064 24.3 2.8 16 60-75 69-84 (118)
8 2f6m_B Vacuolar protein sortin 40.1 19 0.00064 23.9 2.4 17 59-75 59-75 (109)
9 2caz_B Vacuolar protein sortin 37.2 21 0.00072 25.2 2.4 17 59-75 76-92 (155)
10 2zxt_A Maltose-binding peripla 32.8 16 0.00056 27.0 1.4 35 42-76 406-444 (465)
11 2k3j_A Mitochondrial intermemb 28.6 22 0.00075 25.0 1.3 34 43-76 68-105 (146)
12 2h80_A STAR-related lipid tran 24.8 40 0.0014 21.7 1.9 14 65-78 18-33 (81)
13 1pp9_H Ubiquinol-cytochrome C 24.3 54 0.0018 20.3 2.5 25 48-75 19-43 (78)
14 3hkw_A NS5B RNA-dependent RNA 21.8 51 0.0018 27.6 2.5 29 51-79 321-352 (581)
15 2dky_A RHO-GTPase-activating p 20.5 46 0.0016 21.8 1.6 16 64-79 19-36 (91)
No 1
>1u96_A Cytochrome C oxidase copper chaperone; metallochaperone, unstructured N-terminus, two alpha- helices; NMR {Saccharomyces cerevisiae} SCOP: a.17.1.2 PDB: 1u97_A 1z2g_A
Probab=99.97 E-value=1.2e-31 Score=171.77 Aligned_cols=49 Identities=39% Similarity=0.914 Sum_probs=46.8
Q ss_pred CCCCCCCccccCccchhhhhhhhhhccHH--HHHHHHHHHHHHHHhcCCCC
Q 045334 32 ESKPKKKICCACPETKKLRDECIVEHGEE--ACAKWIEAHRKCLRAEGFNV 80 (80)
Q Consensus 32 ~~~~k~KpCCaCpetK~~RDeCil~~ge~--~C~~~Ieahk~Cmr~~GF~v 80 (80)
..++++|||||||+||++||+|||++|++ +|++|||+||+|||+|||+|
T Consensus 15 ~~~~k~KpCCaCpetK~aRDeCil~~gee~~~C~~lIeahk~CMr~~GF~v 65 (69)
T 1u96_A 15 ECEDKPKPCCVCKPEKEERDTCILFNGQDSEKCKEFIEKYKECMKGYGFEV 65 (69)
T ss_dssp SCCCCCCCCTTSSHHHHHHHHHHHHSCSCSGGGHHHHHHHHHHHHTTTCCC
T ss_pred cCCCCCCcCeeCcchhhHHHHHHHhcCCcHHHHHHHHHHHHHHHHHcCCCC
Confidence 46778899999999999999999999999 99999999999999999997
No 2
>2l0y_B HCG2020266, COX17 cytochrome C oxidase assembly homolog (S. C pseudogene (COX17); oxidative protein folding, macromolecular complex; NMR {Homo sapiens} PDB: 2lgq_A 2rn9_A 2rnb_A
Probab=99.96 E-value=2.2e-32 Score=174.46 Aligned_cols=48 Identities=56% Similarity=1.083 Sum_probs=20.6
Q ss_pred CCCCCCccccCccchhhhhhhhhhccHHHHHHHHHHHHHHHHhcCCCC
Q 045334 33 SKPKKKICCACPETKKLRDECIVEHGEEACAKWIEAHRKCLRAEGFNV 80 (80)
Q Consensus 33 ~~~k~KpCCaCpetK~~RDeCil~~ge~~C~~~Ieahk~Cmr~~GF~v 80 (80)
.++++||||||||||++||+|||+||+++|++||||||+|||+|||+|
T Consensus 20 ~~k~~KpCCaCpetK~aRDeCil~~gee~C~~lIeahk~Cmr~~GF~v 67 (67)
T 2l0y_B 20 EKRPLKPCCTCPETKKARDACIIEKGEEHCGHLIEAHKESMRALGFKI 67 (67)
T ss_dssp ---------------------------CCSCSSHHHHHHHHHHHHHHC
T ss_pred CCCCCCcCeeCcchhhHhHHHHHhcCHHHHHHHHHHHHHHHHHcCCCC
Confidence 445579999999999999999999999999999999999999999987
No 3
>1ei0_A P8MTCP1; helix-turn-helix, disulfide bridges, cell cycle; NMR {Synthetic} SCOP: j.77.1.1
Probab=87.17 E-value=0.29 Score=27.11 Aligned_cols=33 Identities=21% Similarity=0.545 Sum_probs=24.0
Q ss_pred Cccchhhhhhhhhhcc--HHHHHHHHHHHHHHHHh
Q 045334 43 CPETKKLRDECIVEHG--EEACAKWIEAHRKCLRA 75 (80)
Q Consensus 43 CpetK~~RDeCil~~g--e~~C~~~Ieahk~Cmr~ 75 (80)
|...-.+=-+|+-.|| +++|..+|+++++|=..
T Consensus 3 C~~~a~a~q~CL~~n~~d~skCq~~id~l~~Cc~~ 37 (38)
T 1ei0_A 3 CQKQAAEIQKCLQANSYLESKCQAVIQELKKCAAQ 37 (38)
T ss_dssp SHHHHHHHHHHHHHTTTCGGGTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHhc
Confidence 3334444457888775 67999999999999653
No 4
>1hp8_A HU-P8; leukemia, cysteine motif; NMR {Homo sapiens} SCOP: a.17.1.1 PDB: 2hp8_A
Probab=85.27 E-value=0.68 Score=28.84 Aligned_cols=34 Identities=24% Similarity=0.496 Sum_probs=26.3
Q ss_pred Cccchhhhhhhhhhcc--HHHHHHHHHHHHHHHHhc
Q 045334 43 CPETKKLRDECIVEHG--EEACAKWIEAHRKCLRAE 76 (80)
Q Consensus 43 CpetK~~RDeCil~~g--e~~C~~~Ieahk~Cmr~~ 76 (80)
|...-.+=-+|+-.|| +++|..+|+++++|=+.+
T Consensus 7 C~~~AcaiQ~CL~~N~yd~skCq~~id~L~eCc~~~ 42 (68)
T 1hp8_A 7 CQKQACEIQKCLQANSYMESKCQAVIQELRKCCAQY 42 (68)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHH
Confidence 4444455567888886 789999999999997754
No 5
>2lql_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 5; CHCH domain, mitochondrial import, MIA40-dependent disulfide system; NMR {Homo sapiens}
Probab=76.19 E-value=3 Score=27.49 Aligned_cols=37 Identities=32% Similarity=0.546 Sum_probs=28.3
Q ss_pred cCccchhhhhhhhhhcc-----HHHHHHHHHHHHHHHHhcCC
Q 045334 42 ACPETKKLRDECIVEHG-----EEACAKWIEAHRKCLRAEGF 78 (80)
Q Consensus 42 aCpetK~~RDeCil~~g-----e~~C~~~Ieahk~Cmr~~GF 78 (80)
.|..+++.=-.|+..++ ..+|.+.+++|..||+...-
T Consensus 36 ~Cl~eg~~vt~Ca~~~p~~~~I~~~C~~ef~~y~~CL~~n~~ 77 (113)
T 2lql_A 36 DCHYLKMSIAQCTSSHPIIRQIRQACAQPFEAFEECLRQNEA 77 (113)
T ss_dssp TCSHHHHHHHHHHHTCCCCHHHHHHTHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHhHHHHHHHHHHHHHccc
Confidence 37777777778876533 46899999999999997643
No 6
>2lqt_A Coiled-coil-helix-coiled-coil-helix domain-contai protein 7; CHCH domain, mitochondrial import, alpha-hairpin, MIA40-DEPE disulfide relay system; NMR {Homo sapiens}
Probab=71.50 E-value=1.4 Score=28.55 Aligned_cols=32 Identities=22% Similarity=0.579 Sum_probs=25.3
Q ss_pred CccchhhhhhhhhhccH--HHHHHHHHHHHHHHH
Q 045334 43 CPETKKLRDECIVEHGE--EACAKWIEAHRKCLR 74 (80)
Q Consensus 43 CpetK~~RDeCil~~ge--~~C~~~Ieahk~Cmr 74 (80)
|-++..+==.|+..|+- +.|.++.++||.|-+
T Consensus 16 C~~e~~~S~kCL~~n~yDr~~C~~yF~~Yk~CKk 49 (85)
T 2lqt_A 16 CLSESDASTRCLDENNYDRERCSTYFLRYKNCRR 49 (85)
T ss_dssp CHHHHHHHHHHHHHTTTCTTTTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHH
Confidence 55666666678888864 589999999999965
No 7
>2p22_B Vacuolar protein sorting-associated protein 28; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae}
Probab=42.37 E-value=19 Score=24.27 Aligned_cols=16 Identities=13% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 045334 60 EACAKWIEAHRKCLRA 75 (80)
Q Consensus 60 ~~C~~~Ieahk~Cmr~ 75 (80)
..|..||.+||..++.
T Consensus 69 ~~C~rLL~QYKt~~~~ 84 (118)
T 2p22_B 69 NTVDKLLKQFKVYLNS 84 (118)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5799999999999984
No 8
>2f6m_B Vacuolar protein sorting-associated protein VPS28; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.2 PDB: 2f66_B
Probab=40.14 E-value=19 Score=23.90 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 045334 59 EEACAKWIEAHRKCLRA 75 (80)
Q Consensus 59 e~~C~~~Ieahk~Cmr~ 75 (80)
+..|..||.+||..++.
T Consensus 59 t~~c~rLL~QyKt~~~~ 75 (109)
T 2f6m_B 59 TNTVDKLLKQFKVYLNS 75 (109)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35899999999999884
No 9
>2caz_B Vacuolar protein sorting-associated protein VPS28; protein transport, ESCRT, MVB, multivesicular bodies, endosome, lysosome, PH domain, protein sorting; 3.6A {Saccharomyces cerevisiae} SCOP: a.2.17.2
Probab=37.18 E-value=21 Score=25.21 Aligned_cols=17 Identities=12% Similarity=0.261 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHh
Q 045334 59 EEACAKWIEAHRKCLRA 75 (80)
Q Consensus 59 e~~C~~~Ieahk~Cmr~ 75 (80)
+..|..||.+||..++.
T Consensus 76 T~aC~rLL~QYKt~~~~ 92 (155)
T 2caz_B 76 TNTVDKLLKQFKVYLNS 92 (155)
T ss_dssp HHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 35799999999999884
No 10
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli}
Probab=32.78 E-value=16 Score=27.04 Aligned_cols=35 Identities=23% Similarity=0.409 Sum_probs=27.0
Q ss_pred cCccchhhhhhhhhhccH----HHHHHHHHHHHHHHHhc
Q 045334 42 ACPETKKLRDECIVEHGE----EACAKWIEAHRKCLRAE 76 (80)
Q Consensus 42 aCpetK~~RDeCil~~ge----~~C~~~Ieahk~Cmr~~ 76 (80)
.|.++=+.==.|++.+.+ .+|.+...++..||+.+
T Consensus 406 ~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~ 444 (465)
T 2zxt_A 406 PCGEEFKSAFSCFVYSEAEPKGIDCVEKFQHMQDCFRKY 444 (465)
T ss_dssp TTHHHHHHHHHHHHHCCSSSTTGGGHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHhhhcCccccccchHHHHHHHHHHHHHHC
Confidence 366666555678887653 48999999999999975
No 11
>2k3j_A Mitochondrial intermembrane space import and assembly protein 40; alpha-hairpin fold, coiled coil-helix-coiled coil-helix domain; NMR {Homo sapiens} PDB: 2l0y_A
Probab=28.56 E-value=22 Score=24.98 Aligned_cols=34 Identities=24% Similarity=0.429 Sum_probs=26.6
Q ss_pred CccchhhhhhhhhhccH----HHHHHHHHHHHHHHHhc
Q 045334 43 CPETKKLRDECIVEHGE----EACAKWIEAHRKCLRAE 76 (80)
Q Consensus 43 CpetK~~RDeCil~~ge----~~C~~~Ieahk~Cmr~~ 76 (80)
|-++=+.==.|++...+ .+|.+...++..||+.+
T Consensus 68 CG~eFreAfsCF~~S~~e~Kg~dC~e~F~~mq~Cm~~~ 105 (146)
T 2k3j_A 68 CGEQFKSAFSCFHYSTEEIKGSDCVDQFRAMQECMQKY 105 (146)
T ss_dssp THHHHHHHHHHHHHHCCSSTTTTTHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHhhccCccccccchHHHHHHHHHHHHHHC
Confidence 66666666678886643 48999999999999976
No 12
>2h80_A STAR-related lipid transfer protein 13; helical bundle, lipid binding protein; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2jw2_A
Probab=24.75 E-value=40 Score=21.67 Aligned_cols=14 Identities=64% Similarity=1.011 Sum_probs=11.8
Q ss_pred HHHHHHHH--HHhcCC
Q 045334 65 WIEAHRKC--LRAEGF 78 (80)
Q Consensus 65 ~Ieahk~C--mr~~GF 78 (80)
.|||...| ||.-||
T Consensus 18 E~eA~eAC~WLRaaGF 33 (81)
T 2h80_A 18 EIEAKEACDWLRAAGF 33 (81)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 57888888 899998
No 13
>1pp9_H Ubiquinol-cytochrome C reductase complex 11 kDa P; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.28.1.1 PDB: 1bgy_H* 1be3_H* 1l0n_H* 1ntk_H* 1ntm_H* 1ntz_H* 1nu1_H* 1l0l_H* 1ppj_H* 1sqb_H* 1sqp_H* 1sqq_H* 1sqv_H* 1sqx_H* 2a06_H* 2fyu_H* 2ybb_H* 1bcc_H* 2bcc_H* 3bcc_H* ...
Probab=24.27 E-value=54 Score=20.34 Aligned_cols=25 Identities=28% Similarity=0.457 Sum_probs=19.3
Q ss_pred hhhhhhhhhccHHHHHHHHHHHHHHHHh
Q 045334 48 KLRDECIVEHGEEACAKWIEAHRKCLRA 75 (80)
Q Consensus 48 ~~RDeCil~~ge~~C~~~Ieahk~Cmr~ 75 (80)
.+|.+|.- ..+|..+...|..|...
T Consensus 19 ~l~e~C~~---~~~C~~~~~~y~~C~eR 43 (78)
T 1pp9_H 19 TVREQCEQ---LEKCVKARERLELCDER 43 (78)
T ss_dssp HHHHHHTT---SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---chhhHHHHHHHHHHHHH
Confidence 57788861 25799999999999865
No 14
>3hkw_A NS5B RNA-dependent RNA polymerase; HCV polymerase, 1,5-benzodiazepine, transferase; HET: IX6; 1.55A {Hepatitis c virus subtype 1A} SCOP: e.8.1.4 PDB: 3qgi_A* 3qgh_A* 2xi3_A* 2xi2_A* 3e51_A* 3bsa_A* 3bsc_A* 3br9_A* 3co9_A* 3cvk_A* 3cwj_A* 3d28_A* 3d5m_A* 3cde_A* 3gyn_A* 3h2l_A* 3igv_A* 2ax0_A* 2awz_A* 2ax1_A* ...
Probab=21.85 E-value=51 Score=27.59 Aligned_cols=29 Identities=17% Similarity=0.166 Sum_probs=22.5
Q ss_pred hhhhhh---ccHHHHHHHHHHHHHHHHhcCCC
Q 045334 51 DECIVE---HGEEACAKWIEAHRKCLRAEGFN 79 (80)
Q Consensus 51 DeCil~---~ge~~C~~~Ieahk~Cmr~~GF~ 79 (80)
|+|+|. .|.+.+..-++++..-|+.|||.
T Consensus 321 DD~VVI~Es~g~~ed~~~Lral~ea~~ryGf~ 352 (581)
T 3hkw_A 321 DDLVVICESAGVQEDAASLRAFTEAMTRYSAP 352 (581)
T ss_dssp TEEEEEEECCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCEEEEEecCCchhHHHHHHHHHHHHHhcCCC
Confidence 677774 35667777788888889999996
No 15
>2dky_A RHO-GTPase-activating protein 7; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.60.1.3 PDB: 2gyt_A 2kap_A
Probab=20.48 E-value=46 Score=21.77 Aligned_cols=16 Identities=56% Similarity=0.899 Sum_probs=12.8
Q ss_pred HHHHHHHHH--HHhcCCC
Q 045334 64 KWIEAHRKC--LRAEGFN 79 (80)
Q Consensus 64 ~~Ieahk~C--mr~~GF~ 79 (80)
..|||...| ||.-||-
T Consensus 19 ~E~eA~eAC~WLRaaGFP 36 (91)
T 2dky_A 19 TQIEAKEACDWLRATGFP 36 (91)
T ss_dssp HHHHHHHHHHHHHHHTCT
T ss_pred hHHHHHHHHHHHHHcCCh
Confidence 468888888 8888884
Done!