Query 045335
Match_columns 339
No_of_seqs 244 out of 2462
Neff 10.8
Searched_HMMs 46136
Date Fri Mar 29 12:12:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02824 hydrolase, alpha/beta 100.0 3.8E-35 8.2E-40 251.8 26.8 266 44-338 8-293 (294)
2 PRK03592 haloalkane dehalogena 100.0 1.7E-35 3.7E-40 254.1 22.1 272 43-338 6-288 (295)
3 PLN02679 hydrolase, alpha/beta 100.0 4.9E-34 1.1E-38 250.5 26.5 269 47-339 64-357 (360)
4 KOG4178 Soluble epoxide hydrol 100.0 2.7E-34 5.9E-39 235.2 20.4 271 38-338 16-319 (322)
5 PRK00870 haloalkane dehalogena 100.0 2.7E-33 5.9E-38 241.1 24.6 267 41-338 16-300 (302)
6 PRK10673 acyl-CoA esterase; Pr 100.0 8.4E-33 1.8E-37 232.6 25.5 251 55-338 2-254 (255)
7 KOG2382 Predicted alpha/beta h 100.0 1.2E-32 2.6E-37 225.8 25.1 268 43-338 35-312 (315)
8 TIGR02240 PHA_depoly_arom poly 100.0 2.9E-33 6.2E-38 237.9 21.5 254 47-338 5-265 (276)
9 PRK10349 carboxylesterase BioH 100.0 8E-33 1.7E-37 232.7 23.6 245 56-338 4-255 (256)
10 PRK03204 haloalkane dehalogena 100.0 2.9E-32 6.3E-37 232.3 23.7 264 41-336 11-285 (286)
11 PLN02965 Probable pheophorbida 100.0 5.6E-32 1.2E-36 227.2 23.0 231 70-339 4-253 (255)
12 PLN03087 BODYGUARD 1 domain co 100.0 1.8E-31 3.9E-36 237.4 26.8 276 46-338 178-478 (481)
13 PLN02578 hydrolase 100.0 2.3E-31 5E-36 233.4 26.3 263 46-338 68-354 (354)
14 PRK06489 hypothetical protein; 100.0 7.4E-32 1.6E-36 237.2 22.3 261 50-339 46-357 (360)
15 TIGR03343 biphenyl_bphD 2-hydr 100.0 2.2E-31 4.7E-36 227.3 23.8 248 53-338 19-282 (282)
16 TIGR03056 bchO_mg_che_rel puta 100.0 2.8E-31 6E-36 226.2 24.1 265 45-337 7-278 (278)
17 KOG4409 Predicted hydrolase/ac 100.0 6.2E-31 1.3E-35 216.0 22.7 267 47-338 68-363 (365)
18 PRK11126 2-succinyl-6-hydroxy- 100.0 3.2E-31 7E-36 221.2 19.6 230 69-339 2-242 (242)
19 TIGR03611 RutD pyrimidine util 100.0 8.5E-31 1.8E-35 220.3 21.6 254 56-338 1-257 (257)
20 PRK08775 homoserine O-acetyltr 100.0 1.4E-31 2.9E-36 234.1 17.0 266 43-338 35-338 (343)
21 PLN03084 alpha/beta hydrolase 100.0 2E-30 4.3E-35 226.6 23.0 258 50-338 111-383 (383)
22 PRK07581 hypothetical protein; 100.0 9.7E-31 2.1E-35 228.8 19.7 264 49-339 21-336 (339)
23 PLN02385 hydrolase; alpha/beta 100.0 2.1E-30 4.5E-35 227.3 21.7 263 47-338 65-344 (349)
24 TIGR01738 bioH putative pimelo 100.0 7.2E-30 1.6E-34 212.9 22.0 235 69-336 4-245 (245)
25 TIGR01392 homoserO_Ac_trn homo 100.0 2.2E-30 4.8E-35 227.2 17.1 271 49-337 11-351 (351)
26 TIGR02427 protocat_pcaD 3-oxoa 100.0 1.5E-29 3.2E-34 211.7 20.7 243 56-337 2-251 (251)
27 PRK00175 metX homoserine O-ace 100.0 5.4E-30 1.2E-34 226.3 18.8 271 49-338 28-373 (379)
28 PHA02857 monoglyceride lipase; 100.0 2.5E-29 5.3E-34 213.9 20.0 256 48-338 5-272 (276)
29 PLN02211 methyl indole-3-aceta 100.0 7E-29 1.5E-33 209.6 22.5 243 52-338 5-269 (273)
30 TIGR01250 pro_imino_pep_2 prol 100.0 5E-28 1.1E-32 206.8 24.8 262 48-337 6-288 (288)
31 PRK10749 lysophospholipase L2; 100.0 1.7E-28 3.8E-33 213.3 21.7 270 44-338 31-328 (330)
32 KOG1454 Predicted hydrolase/ac 100.0 3.1E-29 6.6E-34 214.5 16.6 251 67-338 56-323 (326)
33 PF12697 Abhydrolase_6: Alpha/ 100.0 7.4E-29 1.6E-33 204.1 18.3 221 72-331 1-228 (228)
34 PLN02894 hydrolase, alpha/beta 100.0 2.1E-27 4.6E-32 210.6 26.5 264 55-338 93-384 (402)
35 PLN02298 hydrolase, alpha/beta 100.0 7.1E-28 1.5E-32 210.0 22.3 267 45-338 34-316 (330)
36 TIGR03695 menH_SHCHC 2-succiny 100.0 2.7E-27 5.8E-32 197.8 23.6 234 69-337 1-251 (251)
37 PRK14875 acetoin dehydrogenase 100.0 7.7E-27 1.7E-31 207.1 23.4 252 48-338 113-370 (371)
38 PLN02980 2-oxoglutarate decarb 100.0 5.6E-27 1.2E-31 237.4 25.3 245 56-338 1360-1638(1655)
39 TIGR01249 pro_imino_pep_1 prol 99.9 1E-25 2.3E-30 194.1 24.4 119 47-174 8-130 (306)
40 PLN02652 hydrolase; alpha/beta 99.9 1E-25 2.3E-30 198.2 21.9 264 47-338 114-386 (395)
41 PRK05855 short chain dehydroge 99.9 7.2E-26 1.6E-30 212.6 19.3 119 46-171 5-128 (582)
42 PRK06765 homoserine O-acetyltr 99.9 1.1E-24 2.4E-29 191.0 21.0 270 50-338 37-387 (389)
43 COG2267 PldB Lysophospholipase 99.9 3.2E-24 6.9E-29 181.9 19.0 265 43-338 9-293 (298)
44 KOG2984 Predicted hydrolase [G 99.9 1.5E-25 3.3E-30 169.1 8.7 247 45-338 22-275 (277)
45 KOG2564 Predicted acetyltransf 99.9 1E-24 2.2E-29 173.0 12.7 246 66-338 71-326 (343)
46 PLN02511 hydrolase 99.9 5.5E-24 1.2E-28 188.1 16.4 260 47-338 75-364 (388)
47 TIGR01607 PST-A Plasmodium sub 99.9 5.6E-23 1.2E-27 178.2 19.6 263 49-338 3-332 (332)
48 TIGR03100 hydr1_PEP hydrolase, 99.9 4.5E-21 9.9E-26 162.2 26.3 233 68-338 25-274 (274)
49 COG1647 Esterase/lipase [Gener 99.9 7.9E-22 1.7E-26 151.9 17.6 222 69-338 15-243 (243)
50 KOG1455 Lysophospholipase [Lip 99.9 2.2E-21 4.8E-26 157.1 20.0 264 46-338 30-311 (313)
51 PRK05077 frsA fermentation/res 99.9 4.5E-21 9.7E-26 170.4 23.9 234 46-338 171-411 (414)
52 PRK10985 putative hydrolase; P 99.9 9.5E-21 2.1E-25 164.3 24.3 125 46-173 34-167 (324)
53 PRK11071 esterase YqiA; Provis 99.9 4.9E-21 1.1E-25 152.3 19.7 186 70-337 2-189 (190)
54 PLN02872 triacylglycerol lipas 99.9 1.5E-20 3.3E-25 164.9 17.0 276 42-338 42-388 (395)
55 TIGR01838 PHA_synth_I poly(R)- 99.9 4.5E-20 9.8E-25 166.3 20.3 271 36-326 157-462 (532)
56 PF00561 Abhydrolase_1: alpha/ 99.9 5.7E-21 1.2E-25 157.8 13.4 206 99-333 1-229 (230)
57 PRK10566 esterase; Provisional 99.9 1.4E-19 3E-24 151.6 21.1 91 67-159 25-130 (249)
58 PRK13604 luxD acyl transferase 99.8 1.1E-18 2.4E-23 145.5 22.8 233 43-326 9-250 (307)
59 COG0596 MhpC Predicted hydrola 99.8 4.3E-19 9.3E-24 149.1 18.6 116 53-175 9-124 (282)
60 TIGR01836 PHA_synth_III_C poly 99.8 5.3E-18 1.1E-22 148.8 25.3 103 67-175 60-172 (350)
61 COG3208 GrsT Predicted thioest 99.8 4.3E-18 9.4E-23 134.5 19.7 225 68-337 6-234 (244)
62 PRK07868 acyl-CoA synthetase; 99.8 1.5E-17 3.2E-22 164.0 20.1 249 67-338 65-360 (994)
63 TIGR03101 hydr2_PEP hydrolase, 99.8 1.2E-17 2.7E-22 138.6 15.5 117 51-173 8-133 (266)
64 COG2021 MET2 Homoserine acetyl 99.8 1.8E-17 3.9E-22 138.6 16.0 264 49-339 31-368 (368)
65 PF06342 DUF1057: Alpha/beta h 99.8 2.8E-16 6.1E-21 126.7 21.1 97 70-173 36-136 (297)
66 PF12695 Abhydrolase_5: Alpha/ 99.8 4.2E-17 9.1E-22 124.7 15.4 145 71-319 1-145 (145)
67 PF03096 Ndr: Ndr family; Int 99.7 9.3E-16 2E-20 125.4 21.5 249 54-339 9-279 (283)
68 KOG4667 Predicted esterase [Li 99.7 2.2E-15 4.8E-20 115.7 17.1 216 68-335 32-254 (269)
69 TIGR02821 fghA_ester_D S-formy 99.7 1.4E-14 3E-19 122.7 22.5 118 52-173 23-172 (275)
70 PRK11460 putative hydrolase; P 99.7 1.3E-14 2.8E-19 119.5 19.3 172 66-336 13-209 (232)
71 KOG2931 Differentiation-relate 99.7 4.5E-14 9.7E-19 113.9 21.3 250 54-339 32-306 (326)
72 TIGR03230 lipo_lipase lipoprot 99.7 1.5E-15 3.2E-20 133.5 13.8 105 67-174 39-154 (442)
73 PF00975 Thioesterase: Thioest 99.7 2.4E-15 5.1E-20 124.3 14.2 102 70-174 1-104 (229)
74 PLN00021 chlorophyllase 99.7 5.5E-15 1.2E-19 126.2 16.2 106 65-173 48-165 (313)
75 KOG1552 Predicted alpha/beta h 99.6 9.7E-15 2.1E-19 116.4 14.9 188 68-338 59-251 (258)
76 KOG2565 Predicted hydrolases o 99.6 4E-14 8.8E-19 117.5 16.9 116 49-167 129-257 (469)
77 PLN02442 S-formylglutathione h 99.6 1E-13 2.2E-18 117.7 19.8 118 52-173 28-177 (283)
78 KOG4391 Predicted alpha/beta h 99.6 1.8E-14 3.9E-19 110.9 12.3 220 44-338 55-281 (300)
79 COG1506 DAP2 Dipeptidyl aminop 99.6 6E-14 1.3E-18 131.4 17.8 231 41-338 363-615 (620)
80 cd00707 Pancreat_lipase_like P 99.6 9.8E-15 2.1E-19 123.0 10.5 114 53-174 24-147 (275)
81 TIGR01839 PHA_synth_II poly(R) 99.6 1.1E-12 2.4E-17 117.5 23.6 273 35-325 183-487 (560)
82 COG0429 Predicted hydrolase of 99.6 2.6E-12 5.7E-17 106.2 21.6 104 65-172 71-183 (345)
83 TIGR03502 lipase_Pla1_cef extr 99.6 5.4E-14 1.2E-18 131.1 13.2 114 42-157 416-576 (792)
84 PF05448 AXE1: Acetyl xylan es 99.5 7.9E-12 1.7E-16 107.0 22.8 232 45-338 58-319 (320)
85 TIGR01840 esterase_phb esteras 99.5 4E-12 8.7E-17 103.5 16.5 103 68-174 12-130 (212)
86 PF00326 Peptidase_S9: Prolyl 99.5 5.5E-12 1.2E-16 102.9 16.9 189 85-338 3-208 (213)
87 KOG1838 Alpha/beta hydrolase [ 99.5 1.5E-11 3.3E-16 105.5 19.9 122 49-173 99-234 (409)
88 PF12146 Hydrolase_4: Putative 99.4 6.3E-13 1.4E-17 88.8 8.5 76 53-131 1-79 (79)
89 PF10230 DUF2305: Uncharacteri 99.4 2.8E-11 6.1E-16 101.4 19.9 106 69-174 2-122 (266)
90 PF05728 UPF0227: Uncharacteri 99.4 2.9E-11 6.3E-16 94.9 18.6 87 72-173 2-90 (187)
91 PRK10252 entF enterobactin syn 99.4 2.4E-12 5.2E-17 131.9 15.9 104 68-174 1067-1171(1296)
92 PF02230 Abhydrolase_2: Phosph 99.4 1.3E-11 2.7E-16 100.9 16.1 180 65-338 10-214 (216)
93 COG2945 Predicted hydrolase of 99.4 5.5E-11 1.2E-15 90.4 17.6 169 67-337 26-205 (210)
94 PRK10162 acetyl esterase; Prov 99.4 8.9E-11 1.9E-15 101.5 21.6 115 56-173 69-194 (318)
95 TIGR00976 /NonD putative hydro 99.4 1.2E-12 2.7E-17 121.4 9.9 120 50-174 3-132 (550)
96 COG3319 Thioesterase domains o 99.4 1.4E-11 3.1E-16 100.9 14.8 103 70-175 1-104 (257)
97 PF01738 DLH: Dienelactone hyd 99.4 6.4E-11 1.4E-15 97.0 17.4 98 67-170 12-128 (218)
98 PF06500 DUF1100: Alpha/beta h 99.4 1.4E-10 2.9E-15 100.4 19.3 117 52-173 173-295 (411)
99 PF06821 Ser_hydrolase: Serine 99.3 1.8E-11 3.9E-16 95.1 10.8 156 72-324 1-158 (171)
100 PF02273 Acyl_transf_2: Acyl t 99.3 7E-10 1.5E-14 87.6 18.9 228 49-327 8-244 (294)
101 PTZ00472 serine carboxypeptida 99.3 7.3E-10 1.6E-14 99.9 20.7 125 45-173 48-215 (462)
102 TIGR01849 PHB_depoly_PhaZ poly 99.3 2.4E-09 5.2E-14 93.6 22.3 103 69-175 102-209 (406)
103 COG0400 Predicted esterase [Ge 99.2 6.7E-10 1.5E-14 88.4 15.5 102 64-173 13-133 (207)
104 PF07819 PGAP1: PGAP1-like pro 99.2 2.2E-10 4.7E-15 93.4 12.9 106 68-174 3-123 (225)
105 PRK10115 protease 2; Provision 99.2 3.3E-09 7.2E-14 100.5 20.4 118 42-161 415-549 (686)
106 PF06028 DUF915: Alpha/beta hy 99.2 6.2E-10 1.3E-14 91.7 12.9 108 68-175 10-144 (255)
107 KOG2624 Triglyceride lipase-ch 99.2 1.1E-09 2.3E-14 95.6 14.1 128 44-174 49-199 (403)
108 COG4757 Predicted alpha/beta h 99.1 1.7E-09 3.6E-14 84.8 13.1 250 48-336 10-280 (281)
109 COG0412 Dienelactone hydrolase 99.1 2.3E-08 5.1E-13 82.2 20.4 118 48-172 7-144 (236)
110 PF08538 DUF1749: Protein of u 99.1 2.5E-09 5.5E-14 88.8 14.6 103 68-173 32-147 (303)
111 COG3458 Acetyl esterase (deace 99.1 9.7E-10 2.1E-14 88.1 10.9 229 44-337 57-315 (321)
112 PF09752 DUF2048: Uncharacteri 99.1 2.4E-08 5.3E-13 84.4 19.6 236 67-337 90-347 (348)
113 COG3243 PhaC Poly(3-hydroxyalk 99.1 3.6E-08 7.7E-13 84.6 18.8 240 68-324 106-375 (445)
114 PF02129 Peptidase_S15: X-Pro 99.0 1.8E-08 3.9E-13 85.3 16.0 118 52-174 1-136 (272)
115 PF06057 VirJ: Bacterial virul 99.0 6.2E-09 1.4E-13 80.3 10.9 100 69-173 2-106 (192)
116 PF07859 Abhydrolase_3: alpha/ 99.0 3.5E-08 7.6E-13 80.3 16.1 96 72-173 1-109 (211)
117 PRK05371 x-prolyl-dipeptidyl a 99.0 5.1E-08 1.1E-12 93.2 18.8 81 88-173 271-372 (767)
118 PF03959 FSH1: Serine hydrolas 98.9 5.5E-09 1.2E-13 84.8 9.0 89 68-157 3-123 (212)
119 PLN02733 phosphatidylcholine-s 98.9 5.2E-09 1.1E-13 93.1 9.2 92 80-174 105-201 (440)
120 PRK04940 hypothetical protein; 98.9 2.3E-07 5.1E-12 71.5 16.9 85 72-174 2-92 (180)
121 PF01674 Lipase_2: Lipase (cla 98.9 2E-09 4.3E-14 86.5 5.6 85 70-157 2-96 (219)
122 COG3545 Predicted esterase of 98.9 6.6E-08 1.4E-12 73.0 12.9 173 69-338 2-178 (181)
123 KOG1515 Arylacetamide deacetyl 98.9 7.6E-07 1.7E-11 76.3 21.1 105 67-175 88-208 (336)
124 PF12740 Chlorophyllase2: Chlo 98.9 3.6E-08 7.8E-13 80.5 11.9 105 68-174 16-131 (259)
125 PF12715 Abhydrolase_7: Abhydr 98.9 9.5E-08 2.1E-12 81.7 14.2 99 66-170 112-256 (390)
126 PF07224 Chlorophyllase: Chlor 98.8 4.3E-08 9.3E-13 78.6 10.3 106 68-177 45-160 (307)
127 COG3571 Predicted hydrolase of 98.8 6.8E-07 1.5E-11 66.2 15.6 99 70-173 15-123 (213)
128 PF10503 Esterase_phd: Esteras 98.8 1.1E-07 2.3E-12 76.7 12.4 114 57-174 2-132 (220)
129 smart00824 PKS_TE Thioesterase 98.8 5.3E-08 1.2E-12 79.0 10.7 98 74-174 2-102 (212)
130 COG0657 Aes Esterase/lipase [L 98.8 6.6E-07 1.4E-11 77.5 17.2 116 56-173 64-190 (312)
131 PF05990 DUF900: Alpha/beta hy 98.8 6.4E-08 1.4E-12 79.4 10.2 90 67-157 16-114 (233)
132 PF03403 PAF-AH_p_II: Platelet 98.8 1.7E-07 3.6E-12 82.5 13.3 100 68-173 99-261 (379)
133 PF00450 Peptidase_S10: Serine 98.8 2.2E-07 4.7E-12 83.9 14.5 124 46-173 13-180 (415)
134 PF00151 Lipase: Lipase; Inte 98.7 1.8E-08 3.9E-13 86.7 5.6 106 66-175 68-188 (331)
135 COG4814 Uncharacterized protei 98.6 3.9E-06 8.5E-11 67.1 16.2 107 69-175 45-177 (288)
136 KOG2551 Phospholipase/carboxyh 98.6 2E-06 4.4E-11 67.5 14.2 55 272-337 164-218 (230)
137 PF05057 DUF676: Putative seri 98.6 2.5E-07 5.3E-12 75.3 8.3 84 69-155 4-97 (217)
138 KOG4627 Kynurenine formamidase 98.6 7E-07 1.5E-11 69.0 9.9 105 58-172 58-170 (270)
139 KOG3975 Uncharacterized conser 98.5 1.3E-05 2.9E-10 63.9 16.5 105 68-173 28-146 (301)
140 PLN02633 palmitoyl protein thi 98.5 2.3E-05 5.1E-10 65.4 17.6 101 69-173 25-130 (314)
141 COG3509 LpqC Poly(3-hydroxybut 98.5 3.1E-06 6.7E-11 69.5 11.3 122 49-174 40-179 (312)
142 PF05677 DUF818: Chlamydia CHL 98.5 3.3E-06 7.1E-11 70.9 11.6 91 66-158 134-237 (365)
143 PF04301 DUF452: Protein of un 98.5 7.7E-06 1.7E-10 65.2 13.3 83 69-177 11-93 (213)
144 COG1075 LipA Predicted acetylt 98.4 7.3E-07 1.6E-11 77.5 8.2 102 69-173 59-163 (336)
145 PF08840 BAAT_C: BAAT / Acyl-C 98.4 8.3E-07 1.8E-11 72.0 7.9 49 122-174 5-56 (213)
146 KOG2100 Dipeptidyl aminopeptid 98.4 2.2E-05 4.7E-10 75.3 18.0 124 43-173 497-643 (755)
147 PF05705 DUF829: Eukaryotic pr 98.4 6E-05 1.3E-09 62.6 18.6 228 71-336 1-240 (240)
148 KOG2281 Dipeptidyl aminopeptid 98.4 1.4E-05 2.9E-10 72.2 15.2 114 46-161 616-752 (867)
149 PF11339 DUF3141: Protein of u 98.4 0.00019 4E-09 63.9 21.0 102 66-178 65-178 (581)
150 KOG3043 Predicted hydrolase re 98.3 8E-06 1.7E-10 64.3 10.2 89 69-159 39-143 (242)
151 KOG2112 Lysophospholipase [Lip 98.3 1.1E-05 2.3E-10 63.0 10.9 89 69-159 3-116 (206)
152 COG3150 Predicted esterase [Ge 98.2 8.9E-06 1.9E-10 60.8 8.5 87 72-174 2-91 (191)
153 KOG1553 Predicted alpha/beta h 98.2 1.5E-05 3.2E-10 66.7 9.7 122 44-174 215-344 (517)
154 KOG3847 Phospholipase A2 (plat 98.2 1.6E-05 3.5E-10 65.7 9.5 41 69-111 118-158 (399)
155 PF03583 LIP: Secretory lipase 98.2 0.00038 8.3E-09 59.3 18.2 67 88-156 18-91 (290)
156 PLN03016 sinapoylglucose-malat 98.1 0.0014 3.1E-08 58.9 21.9 111 46-156 39-185 (433)
157 COG4188 Predicted dienelactone 98.1 7.8E-06 1.7E-10 69.7 6.6 90 68-159 70-182 (365)
158 PF05577 Peptidase_S28: Serine 98.1 6.5E-05 1.4E-09 68.2 12.7 92 68-161 28-138 (434)
159 KOG1282 Serine carboxypeptidas 98.1 0.00081 1.8E-08 60.1 18.7 108 47-155 47-187 (454)
160 COG4782 Uncharacterized protei 98.0 5.1E-05 1.1E-09 64.3 10.1 90 67-156 114-211 (377)
161 PF02089 Palm_thioest: Palmito 98.0 1.7E-05 3.7E-10 65.6 6.9 102 68-173 4-115 (279)
162 KOG3724 Negative regulator of 98.0 5.5E-05 1.2E-09 70.0 10.2 107 65-173 85-219 (973)
163 KOG4840 Predicted hydrolases o 98.0 7.8E-05 1.7E-09 58.6 9.4 83 69-154 36-125 (299)
164 KOG3253 Predicted alpha/beta h 98.0 9.5E-05 2E-09 66.5 11.0 162 68-324 175-350 (784)
165 PF00756 Esterase: Putative es 98.0 4.1E-05 9E-10 64.0 8.6 103 68-173 23-149 (251)
166 PLN02606 palmitoyl-protein thi 97.9 0.00023 4.9E-09 59.6 12.1 101 69-173 26-131 (306)
167 KOG2541 Palmitoyl protein thio 97.9 0.00027 5.9E-09 57.4 11.5 100 69-173 23-127 (296)
168 PF02450 LCAT: Lecithin:choles 97.8 0.00019 4E-09 63.9 10.7 116 47-175 33-161 (389)
169 COG4099 Predicted peptidase [G 97.8 0.00032 7E-09 57.8 10.9 114 51-173 169-303 (387)
170 PF12048 DUF3530: Protein of u 97.8 0.0019 4.1E-08 55.5 15.4 101 69-173 87-228 (310)
171 PRK10439 enterobactin/ferric e 97.8 0.00045 9.8E-09 61.8 11.9 118 53-173 191-322 (411)
172 PF10340 DUF2424: Protein of u 97.8 0.00057 1.2E-08 59.3 12.0 121 57-177 108-238 (374)
173 PF10142 PhoPQ_related: PhoPQ- 97.6 0.001 2.2E-08 58.0 12.0 218 66-338 61-319 (367)
174 KOG1551 Uncharacterized conser 97.5 0.0014 3E-08 53.2 10.5 56 274-338 309-365 (371)
175 COG2936 Predicted acyl esteras 97.5 0.00026 5.7E-09 64.3 7.0 122 46-173 22-158 (563)
176 KOG2183 Prolylcarboxypeptidase 97.5 0.003 6.5E-08 54.7 12.3 90 69-159 80-190 (492)
177 KOG1202 Animal-type fatty acid 97.5 0.0029 6.4E-08 61.7 13.5 96 68-176 2122-2221(2376)
178 cd00312 Esterase_lipase Estera 97.3 0.001 2.2E-08 61.7 8.4 105 67-174 93-213 (493)
179 COG1073 Hydrolases of the alph 97.3 0.0079 1.7E-07 51.3 13.5 69 262-338 224-296 (299)
180 KOG3101 Esterase D [General fu 97.3 0.0003 6.5E-09 55.0 3.6 93 69-162 44-167 (283)
181 KOG3967 Uncharacterized conser 97.2 0.0039 8.5E-08 48.9 9.5 105 68-173 100-226 (297)
182 PF01764 Lipase_3: Lipase (cla 97.2 0.00096 2.1E-08 50.2 6.0 40 120-159 48-87 (140)
183 PF08386 Abhydrolase_4: TAP-li 97.2 0.001 2.2E-08 47.0 5.6 58 272-337 35-92 (103)
184 cd00741 Lipase Lipase. Lipase 97.2 0.0016 3.5E-08 49.8 7.1 53 121-173 9-66 (153)
185 COG1505 Serine proteases of th 97.1 0.0097 2.1E-07 54.2 11.7 116 42-161 393-525 (648)
186 PLN02209 serine carboxypeptida 97.1 0.0078 1.7E-07 54.3 11.2 111 46-156 41-187 (437)
187 KOG2369 Lecithin:cholesterol a 97.0 0.0012 2.5E-08 58.3 5.5 75 83-159 124-205 (473)
188 PF11144 DUF2920: Protein of u 96.9 0.018 3.9E-07 50.5 11.5 55 55-110 21-77 (403)
189 PF06441 EHN: Epoxide hydrolas 96.9 0.0021 4.5E-08 45.9 4.9 46 43-89 67-112 (112)
190 COG2272 PnbA Carboxylesterase 96.9 0.0018 3.9E-08 57.6 5.5 118 56-175 80-218 (491)
191 COG0627 Predicted esterase [Ge 96.9 0.0033 7.2E-08 53.9 7.0 93 69-162 54-178 (316)
192 PF06259 Abhydrolase_8: Alpha/ 96.7 0.072 1.6E-06 41.6 12.5 104 67-173 17-143 (177)
193 KOG2182 Hydrolytic enzymes of 96.7 0.014 3E-07 52.0 9.2 93 67-160 84-196 (514)
194 COG3946 VirJ Type IV secretory 96.7 0.017 3.8E-07 50.0 9.4 87 68-159 259-349 (456)
195 KOG4372 Predicted alpha/beta h 96.6 0.0039 8.3E-08 54.1 5.4 86 68-153 79-167 (405)
196 COG2939 Carboxypeptidase C (ca 96.6 0.015 3.3E-07 52.0 8.9 105 55-159 87-221 (498)
197 COG2819 Predicted hydrolase of 96.6 0.036 7.8E-07 45.7 10.3 37 134-173 135-171 (264)
198 PLN02517 phosphatidylcholine-s 96.6 0.0073 1.6E-07 55.3 6.9 70 83-156 156-233 (642)
199 cd00519 Lipase_3 Lipase (class 96.5 0.0074 1.6E-07 49.7 6.4 30 129-158 121-150 (229)
200 PF11187 DUF2974: Protein of u 96.4 0.011 2.3E-07 48.3 6.5 52 121-173 70-122 (224)
201 PF00135 COesterase: Carboxyle 96.4 0.063 1.4E-06 50.2 12.5 104 69-175 125-246 (535)
202 PF07082 DUF1350: Protein of u 96.0 0.13 2.7E-06 42.1 10.6 90 71-172 19-123 (250)
203 PLN02162 triacylglycerol lipas 96.0 0.022 4.7E-07 50.8 6.7 37 119-155 261-297 (475)
204 COG2382 Fes Enterochelin ester 95.8 0.059 1.3E-06 45.2 8.1 111 56-172 85-210 (299)
205 PLN02571 triacylglycerol lipas 95.8 0.017 3.6E-07 51.1 5.1 37 120-156 208-246 (413)
206 PF04083 Abhydro_lipase: Parti 95.8 0.021 4.5E-07 36.1 4.1 38 48-85 17-59 (63)
207 KOG2029 Uncharacterized conser 95.7 0.03 6.6E-07 50.9 6.5 82 92-173 472-571 (697)
208 PLN02454 triacylglycerol lipas 95.7 0.021 4.5E-07 50.4 5.4 34 124-157 214-249 (414)
209 PF11288 DUF3089: Protein of u 95.7 0.029 6.3E-07 44.7 5.7 58 100-157 47-116 (207)
210 PLN00413 triacylglycerol lipas 95.7 0.022 4.8E-07 50.9 5.5 37 119-155 267-303 (479)
211 PLN02408 phospholipase A1 95.4 0.028 6E-07 48.9 5.1 37 122-158 184-222 (365)
212 PF05576 Peptidase_S37: PS-10 95.4 0.03 6.4E-07 49.0 5.2 100 67-173 61-168 (448)
213 PLN02934 triacylglycerol lipas 95.4 0.028 6.2E-07 50.6 5.1 37 119-155 304-340 (515)
214 COG2830 Uncharacterized protei 95.1 0.18 3.8E-06 38.0 7.5 79 69-173 11-89 (214)
215 COG1770 PtrB Protease II [Amin 95.0 1.4 3.1E-05 41.2 14.8 108 51-161 427-552 (682)
216 KOG2521 Uncharacterized conser 95.0 1.4 3E-05 38.4 14.0 106 69-176 38-153 (350)
217 PLN02310 triacylglycerol lipas 95.0 0.072 1.6E-06 47.0 6.3 37 120-156 189-229 (405)
218 PLN02324 triacylglycerol lipas 94.9 0.05 1.1E-06 48.0 5.1 35 122-156 199-235 (415)
219 KOG2237 Predicted serine prote 94.8 0.041 8.9E-07 50.6 4.5 118 42-161 440-574 (712)
220 PLN02802 triacylglycerol lipas 94.5 0.067 1.4E-06 48.4 5.0 37 121-157 313-351 (509)
221 PF01083 Cutinase: Cutinase; 94.3 0.081 1.8E-06 41.6 4.7 55 119-173 64-121 (179)
222 PLN02753 triacylglycerol lipas 94.2 0.079 1.7E-06 48.1 4.9 36 121-156 292-332 (531)
223 KOG1283 Serine carboxypeptidas 94.2 0.52 1.1E-05 39.9 9.2 108 46-157 5-143 (414)
224 COG4947 Uncharacterized protei 94.2 0.16 3.5E-06 38.7 5.7 113 53-173 14-135 (227)
225 PLN03037 lipase class 3 family 94.1 0.083 1.8E-06 47.9 4.9 36 121-156 299-338 (525)
226 PLN02761 lipase class 3 family 93.9 0.1 2.2E-06 47.4 4.9 36 121-156 273-314 (527)
227 PLN02719 triacylglycerol lipas 93.8 0.1 2.3E-06 47.2 4.9 36 122-157 279-319 (518)
228 PF05277 DUF726: Protein of un 93.8 0.15 3.3E-06 44.2 5.7 40 134-173 218-259 (345)
229 PLN02213 sinapoylglucose-malat 93.8 0.2 4.2E-06 43.6 6.5 57 100-156 3-71 (319)
230 PLN02847 triacylglycerol lipas 93.3 0.16 3.6E-06 46.8 5.3 21 136-156 251-271 (633)
231 KOG1516 Carboxylesterase and r 92.6 0.93 2E-05 42.7 9.5 103 69-173 112-231 (545)
232 KOG4569 Predicted lipase [Lipi 92.2 0.26 5.6E-06 43.1 4.9 38 120-157 155-192 (336)
233 COG4287 PqaA PhoPQ-activated p 91.7 0.4 8.6E-06 41.4 5.2 55 272-337 330-385 (507)
234 PF08237 PE-PPE: PE-PPE domain 91.2 1.2 2.5E-05 36.5 7.4 61 97-157 1-69 (225)
235 PRK12467 peptide synthase; Pro 90.8 1.5 3.3E-05 51.3 10.3 102 69-173 3692-3794(3956)
236 PLN02213 sinapoylglucose-malat 88.9 0.99 2.2E-05 39.2 5.6 66 271-338 233-316 (319)
237 PF06309 Torsin: Torsin; Inte 87.7 3.3 7.2E-05 30.2 6.7 64 66-132 49-115 (127)
238 COG4553 DepA Poly-beta-hydroxy 87.7 10 0.00022 32.1 10.1 99 68-173 102-208 (415)
239 KOG4388 Hormone-sensitive lipa 87.2 4.4 9.5E-05 37.6 8.5 89 67-157 394-490 (880)
240 PLN02209 serine carboxypeptida 87.0 1.5 3.3E-05 39.8 5.8 66 271-338 351-434 (437)
241 COG5153 CVT17 Putative lipase 84.7 2.2 4.8E-05 35.6 5.0 24 134-157 274-297 (425)
242 KOG4540 Putative lipase essent 84.7 2.2 4.8E-05 35.6 5.0 24 134-157 274-297 (425)
243 TIGR02816 pfaB_fam PfaB family 83.0 4.1 9E-05 38.0 6.6 32 126-157 254-286 (538)
244 cd01714 ETF_beta The electron 78.5 15 0.00032 29.6 7.7 53 100-158 79-135 (202)
245 PF07519 Tannase: Tannase and 76.8 4.6 0.0001 37.2 4.9 72 98-173 59-149 (474)
246 COG4822 CbiK Cobalamin biosynt 76.5 31 0.00067 27.7 8.5 61 68-140 137-198 (265)
247 COG1856 Uncharacterized homolo 75.2 43 0.00094 27.2 9.1 74 98-175 110-193 (275)
248 smart00827 PKS_AT Acyl transfe 74.8 4.1 8.9E-05 34.9 3.9 30 126-155 72-101 (298)
249 PF00698 Acyl_transf_1: Acyl t 73.6 2.6 5.7E-05 36.6 2.4 29 126-154 74-102 (318)
250 PF06850 PHB_depo_C: PHB de-po 72.8 3.6 7.8E-05 32.5 2.7 60 272-338 135-201 (202)
251 cd07225 Pat_PNPLA6_PNPLA7 Pata 72.7 5.6 0.00012 34.3 4.1 33 125-157 32-64 (306)
252 TIGR03131 malonate_mdcH malona 72.6 5.2 0.00011 34.3 4.0 30 126-155 66-95 (295)
253 PRK10279 hypothetical protein; 70.9 6.6 0.00014 33.8 4.1 33 126-158 23-55 (300)
254 cd07198 Patatin Patatin-like p 70.0 7.6 0.00016 30.2 4.1 34 126-159 16-49 (172)
255 TIGR00128 fabD malonyl CoA-acy 69.5 6.1 0.00013 33.6 3.7 29 127-155 73-102 (290)
256 PF09949 DUF2183: Uncharacteri 69.2 36 0.00079 23.8 7.8 79 86-168 13-96 (100)
257 COG3933 Transcriptional antite 68.5 37 0.00081 30.7 8.2 76 69-155 109-184 (470)
258 COG1752 RssA Predicted esteras 67.9 7.3 0.00016 33.6 3.9 33 126-158 29-61 (306)
259 cd07207 Pat_ExoU_VipD_like Exo 67.7 8.6 0.00019 30.5 4.0 33 126-158 17-49 (194)
260 cd07227 Pat_Fungal_NTE1 Fungal 67.2 8.9 0.00019 32.4 4.1 32 126-157 28-59 (269)
261 COG1448 TyrB Aspartate/tyrosin 65.9 60 0.0013 28.8 8.8 86 69-172 171-263 (396)
262 cd07210 Pat_hypo_W_succinogene 65.8 11 0.00023 30.9 4.2 33 126-158 18-50 (221)
263 TIGR03712 acc_sec_asp2 accesso 64.8 1.2E+02 0.0026 28.1 15.8 86 67-157 287-378 (511)
264 KOG2385 Uncharacterized conser 63.7 9.8 0.00021 34.8 3.8 42 132-173 443-486 (633)
265 PF06792 UPF0261: Uncharacteri 61.1 1.3E+02 0.0027 27.2 11.7 95 70-170 2-126 (403)
266 COG0218 Predicted GTPase [Gene 60.6 13 0.00027 29.7 3.6 31 101-131 72-102 (200)
267 PF00326 Peptidase_S9: Prolyl 59.7 27 0.00058 28.0 5.6 63 68-132 143-208 (213)
268 cd07209 Pat_hypo_Ecoli_Z1214_l 59.7 15 0.00032 29.8 4.1 33 126-158 16-48 (215)
269 PF03610 EIIA-man: PTS system 59.2 63 0.0014 23.1 9.0 74 72-156 3-77 (116)
270 PLN02748 tRNA dimethylallyltra 57.1 95 0.0021 28.7 9.0 77 65-144 17-120 (468)
271 cd07228 Pat_NTE_like_bacteria 57.0 19 0.00041 28.0 4.1 32 128-159 20-51 (175)
272 COG3340 PepE Peptidase E [Amin 56.7 70 0.0015 25.9 7.0 36 69-106 32-70 (224)
273 COG1506 DAP2 Dipeptidyl aminop 55.1 60 0.0013 31.3 7.9 62 68-131 550-614 (620)
274 cd07205 Pat_PNPLA6_PNPLA7_NTE1 53.6 24 0.00051 27.4 4.2 32 126-157 18-49 (175)
275 PRK02399 hypothetical protein; 52.9 1.8E+02 0.0038 26.3 13.0 95 70-170 4-128 (406)
276 TIGR00521 coaBC_dfp phosphopan 51.7 1.4E+02 0.003 26.9 9.1 85 70-157 113-225 (390)
277 TIGR00421 ubiX_pad polyprenyl 51.0 98 0.0021 24.4 7.2 61 69-136 112-174 (181)
278 COG0031 CysK Cysteine synthase 50.2 1.7E+02 0.0036 25.3 9.8 108 47-159 144-282 (300)
279 COG0529 CysC Adenylylsulfate k 50.2 1.3E+02 0.0027 23.8 7.3 62 68-131 21-86 (197)
280 cd07230 Pat_TGL4-5_like Triacy 49.0 21 0.00045 32.4 3.5 35 125-159 90-124 (421)
281 PRK05579 bifunctional phosphop 48.1 2E+02 0.0042 26.1 9.4 72 69-143 116-196 (399)
282 COG0279 GmhA Phosphoheptose is 47.3 82 0.0018 24.3 5.8 73 73-148 44-121 (176)
283 cd07208 Pat_hypo_Ecoli_yjju_li 46.5 34 0.00075 28.7 4.4 34 126-159 16-50 (266)
284 cd07224 Pat_like Patatin-like 46.3 34 0.00074 28.2 4.2 34 125-158 16-51 (233)
285 PF00448 SRP54: SRP54-type pro 46.2 1.5E+02 0.0033 23.6 9.9 74 87-169 74-147 (196)
286 COG1576 Uncharacterized conser 45.9 61 0.0013 24.7 5.0 49 98-154 67-116 (155)
287 KOG2170 ATPase of the AAA+ sup 45.8 54 0.0012 28.2 5.1 21 65-85 105-125 (344)
288 cd07229 Pat_TGL3_like Triacylg 45.0 27 0.00059 31.2 3.6 34 126-159 101-134 (391)
289 cd07231 Pat_SDP1-like Sugar-De 44.0 30 0.00065 29.9 3.5 33 125-157 85-117 (323)
290 PF06289 FlbD: Flagellar prote 43.6 43 0.00093 20.9 3.2 33 305-338 25-57 (60)
291 PRK13728 conjugal transfer pro 43.4 72 0.0016 25.1 5.3 54 48-110 58-111 (181)
292 cd07212 Pat_PNPLA9 Patatin-lik 43.2 40 0.00086 29.3 4.2 19 139-157 35-53 (312)
293 PRK04148 hypothetical protein; 43.1 59 0.0013 24.1 4.5 47 120-173 2-48 (134)
294 PF03808 Glyco_tran_WecB: Glyc 43.0 1.6E+02 0.0034 22.9 9.7 70 69-151 48-117 (172)
295 COG1582 FlgEa Uncharacterized 43.0 33 0.00072 21.4 2.6 33 305-338 25-57 (67)
296 PRK05282 (alpha)-aspartyl dipe 42.8 91 0.002 25.7 6.1 37 69-107 31-70 (233)
297 PF11713 Peptidase_C80: Peptid 42.0 25 0.00054 26.9 2.6 47 102-148 57-116 (157)
298 cd03146 GAT1_Peptidase_E Type 42.0 76 0.0016 25.6 5.5 83 68-152 30-129 (212)
299 PHA02114 hypothetical protein 42.0 42 0.00091 23.1 3.2 34 70-105 83-116 (127)
300 cd07232 Pat_PLPL Patain-like p 41.6 32 0.00068 31.1 3.5 35 125-159 84-118 (407)
301 PRK06029 3-octaprenyl-4-hydrox 41.1 1.5E+02 0.0033 23.4 6.8 63 69-137 115-178 (185)
302 cd03818 GT1_ExpC_like This fam 41.0 2.2E+02 0.0048 25.4 9.0 37 72-112 2-38 (396)
303 KOG1252 Cystathionine beta-syn 40.5 96 0.0021 27.1 5.9 100 68-171 210-336 (362)
304 TIGR03607 patatin-related prot 40.3 92 0.002 30.6 6.5 36 120-155 47-85 (739)
305 COG1073 Hydrolases of the alph 40.3 2 4.4E-05 36.3 -4.1 88 67-158 47-154 (299)
306 TIGR01361 DAHP_synth_Bsub phos 39.9 2.3E+02 0.0049 23.9 9.0 70 68-146 131-206 (260)
307 PF12242 Eno-Rase_NADH_b: NAD( 39.6 51 0.0011 21.7 3.2 25 134-158 38-62 (78)
308 PRK01581 speE spermidine synth 39.5 2.8E+02 0.0061 24.8 9.7 111 55-173 54-183 (374)
309 PRK11613 folP dihydropteroate 39.4 2.4E+02 0.0053 24.1 8.5 57 86-149 166-224 (282)
310 cd00401 AdoHcyase S-adenosyl-L 39.2 1.8E+02 0.0039 26.5 7.8 68 86-167 75-142 (413)
311 PF03283 PAE: Pectinacetyleste 39.1 1.2E+02 0.0026 26.9 6.7 21 136-156 156-176 (361)
312 PF09994 DUF2235: Uncharacteri 38.6 2.5E+02 0.0053 23.9 8.4 40 118-157 72-113 (277)
313 COG2876 AroA 3-deoxy-D-arabino 38.6 1.4E+02 0.0031 25.1 6.4 74 68-147 151-227 (286)
314 cd07204 Pat_PNPLA_like Patatin 38.3 53 0.0011 27.3 4.1 33 126-158 17-53 (243)
315 PRK07313 phosphopantothenoylcy 37.4 1.2E+02 0.0025 24.0 5.7 60 69-131 113-179 (182)
316 PF13728 TraF: F plasmid trans 37.3 84 0.0018 25.5 5.0 44 71-115 124-167 (215)
317 PF02590 SPOUT_MTase: Predicte 37.0 43 0.00093 25.6 3.1 44 98-147 67-110 (155)
318 PF08094 Toxin_24: Conotoxin T 36.9 20 0.00043 18.3 0.8 9 3-11 3-11 (33)
319 cd01819 Patatin_and_cPLA2 Pata 36.8 65 0.0014 24.5 4.2 28 127-154 17-46 (155)
320 PF04084 ORC2: Origin recognit 36.8 2.5E+02 0.0054 24.6 8.2 34 116-149 116-150 (326)
321 TIGR02764 spore_ybaN_pdaB poly 36.2 34 0.00073 27.0 2.6 33 71-105 153-188 (191)
322 PF13207 AAA_17: AAA domain; P 35.7 42 0.00091 23.9 2.9 59 72-133 1-64 (121)
323 cd07206 Pat_TGL3-4-5_SDP1 Tria 35.7 59 0.0013 27.9 4.0 32 126-157 87-118 (298)
324 PF04951 Peptidase_M55: D-amin 35.5 67 0.0015 27.1 4.3 50 272-335 148-199 (265)
325 PF10081 Abhydrolase_9: Alpha/ 34.8 2.1E+02 0.0046 24.4 7.0 49 124-172 94-145 (289)
326 cd01853 Toc34_like Toc34-like 34.7 61 0.0013 27.0 4.0 35 98-132 78-112 (249)
327 COG0482 TrmU Predicted tRNA(5- 34.6 1.8E+02 0.0038 25.8 6.8 60 69-135 4-64 (356)
328 PF01583 APS_kinase: Adenylyls 34.4 2.1E+02 0.0046 21.9 7.6 59 69-129 1-63 (156)
329 cd08770 DAP_dppA_3 Peptidase M 34.4 1.1E+02 0.0024 25.7 5.4 51 272-336 148-199 (263)
330 PF01171 ATP_bind_3: PP-loop f 34.3 2.1E+02 0.0045 22.3 6.8 81 71-156 32-117 (182)
331 cd08769 DAP_dppA_2 Peptidase M 34.2 1.2E+02 0.0027 25.6 5.6 50 271-334 147-198 (270)
332 PF08386 Abhydrolase_4: TAP-li 34.2 1.6E+02 0.0035 20.5 6.9 44 69-113 34-77 (103)
333 cd07221 Pat_PNPLA3 Patatin-lik 34.2 67 0.0014 26.9 4.1 22 137-158 33-54 (252)
334 cd07218 Pat_iPLA2 Calcium-inde 34.2 66 0.0014 26.8 4.1 21 138-158 32-52 (245)
335 PRK00103 rRNA large subunit me 33.4 1.1E+02 0.0023 23.5 4.8 45 100-150 69-113 (157)
336 PF14253 AbiH: Bacteriophage a 33.2 41 0.0009 28.2 2.8 20 134-153 233-252 (270)
337 cd07220 Pat_PNPLA2 Patatin-lik 33.2 68 0.0015 26.8 4.0 22 137-158 37-58 (249)
338 cd06533 Glyco_transf_WecG_TagA 33.2 2.3E+02 0.005 21.9 8.5 69 69-150 46-114 (171)
339 cd08663 DAP_dppA_1 Peptidase M 32.9 1.4E+02 0.003 25.2 5.7 51 271-335 147-199 (266)
340 TIGR02873 spore_ylxY probable 32.3 59 0.0013 27.5 3.5 34 70-105 231-264 (268)
341 PF09419 PGP_phosphatase: Mito 31.7 1.4E+02 0.0031 23.2 5.2 53 92-146 36-88 (168)
342 TIGR00246 tRNA_RlmH_YbeA rRNA 31.4 99 0.0021 23.6 4.3 45 100-151 67-111 (153)
343 cd01014 nicotinamidase_related 31.2 2.2E+02 0.0048 21.4 6.3 30 125-154 89-118 (155)
344 cd00281 DAP_dppA Peptidase M55 31.0 1.5E+02 0.0033 25.0 5.6 58 101-159 4-74 (265)
345 TIGR02884 spore_pdaA delta-lac 30.7 64 0.0014 26.3 3.4 34 70-105 187-221 (224)
346 PF02633 Creatininase: Creatin 30.5 1.3E+02 0.0028 24.8 5.2 68 86-155 43-120 (237)
347 PRK06849 hypothetical protein; 30.3 3.4E+02 0.0073 24.3 8.3 70 69-144 4-85 (389)
348 COG0331 FabD (acyl-carrier-pro 29.9 74 0.0016 27.6 3.8 22 134-155 83-104 (310)
349 cd00006 PTS_IIA_man PTS_IIA, P 29.6 2.2E+02 0.0047 20.5 7.1 70 71-151 3-73 (122)
350 COG0324 MiaA tRNA delta(2)-iso 28.9 3.4E+02 0.0073 23.6 7.5 74 69-145 2-102 (308)
351 PRK06731 flhF flagellar biosyn 28.8 3.6E+02 0.0079 22.8 10.3 75 86-169 143-218 (270)
352 PRK10319 N-acetylmuramoyl-l-al 28.6 1.5E+02 0.0033 25.3 5.4 36 99-135 56-100 (287)
353 cd07222 Pat_PNPLA4 Patatin-lik 28.4 92 0.002 25.9 4.0 30 126-155 17-50 (246)
354 COG2939 Carboxypeptidase C (ca 27.8 72 0.0016 29.5 3.4 31 307-337 459-489 (498)
355 PRK11789 N-acetyl-anhydromuran 27.8 78 0.0017 25.0 3.3 46 100-145 113-158 (185)
356 PF14488 DUF4434: Domain of un 27.7 2.2E+02 0.0047 22.1 5.7 55 79-135 16-79 (166)
357 PLN02840 tRNA dimethylallyltra 27.6 3.6E+02 0.0078 24.6 7.7 74 68-144 19-119 (421)
358 COG1092 Predicted SAM-dependen 27.5 2.1E+02 0.0045 25.8 6.2 30 89-118 281-310 (393)
359 cd02965 HyaE HyaE family; HyaE 27.4 2.3E+02 0.0051 20.2 5.4 38 68-105 27-68 (111)
360 PF03490 Varsurf_PPLC: Variant 26.8 72 0.0016 18.9 2.1 27 116-142 5-31 (51)
361 TIGR02883 spore_cwlD N-acetylm 26.7 2.2E+02 0.0048 22.4 5.8 34 101-135 2-44 (189)
362 PRK08118 topology modulation p 26.5 3E+02 0.0065 21.1 8.5 85 73-173 4-88 (167)
363 PF14606 Lipase_GDSL_3: GDSL-l 26.2 3.3E+02 0.0071 21.5 7.0 71 71-141 62-142 (178)
364 PRK14974 cell division protein 26.1 4.6E+02 0.0099 23.1 9.5 65 98-169 222-286 (336)
365 KOG1752 Glutaredoxin and relat 25.5 1.7E+02 0.0037 20.6 4.3 77 68-157 13-90 (104)
366 PRK10115 protease 2; Provision 25.5 2E+02 0.0043 28.3 6.2 68 68-135 605-678 (686)
367 PRK09936 hypothetical protein; 25.4 3.6E+02 0.0079 23.1 6.8 32 80-113 35-66 (296)
368 PRK13398 3-deoxy-7-phosphohept 25.3 4.2E+02 0.0091 22.4 10.9 75 68-146 133-208 (266)
369 PF04244 DPRP: Deoxyribodipyri 25.2 1.6E+02 0.0034 24.2 4.7 49 84-141 50-98 (224)
370 COG4100 Cystathionine beta-lya 25.0 3.6E+02 0.0079 23.4 6.7 62 83-149 153-214 (416)
371 KOG4231 Intracellular membrane 24.8 90 0.002 28.9 3.4 50 98-156 416-470 (763)
372 COG0163 UbiX 3-polyprenyl-4-hy 24.5 3.4E+02 0.0075 21.5 6.1 62 69-137 118-180 (191)
373 PRK06824 translation initiatio 24.4 2.8E+02 0.0061 20.1 6.2 57 68-135 53-111 (118)
374 PRK02842 light-independent pro 24.3 2.2E+02 0.0048 26.0 6.1 44 69-112 97-143 (427)
375 PRK05920 aromatic acid decarbo 24.3 3.8E+02 0.0083 21.6 7.0 62 69-136 130-192 (204)
376 TIGR02813 omega_3_PfaA polyket 24.2 77 0.0017 36.2 3.5 29 126-154 664-692 (2582)
377 PLN02752 [acyl-carrier protein 23.9 84 0.0018 27.6 3.2 28 128-155 110-143 (343)
378 PF09754 PAC2: PAC2 family; I 23.8 70 0.0015 25.8 2.5 34 111-144 75-108 (219)
379 PRK00091 miaA tRNA delta(2)-is 23.8 3.6E+02 0.0078 23.4 6.9 70 69-141 3-99 (307)
380 COG3946 VirJ Type IV secretory 23.8 3.2E+02 0.007 24.7 6.5 71 88-160 67-145 (456)
381 PF02230 Abhydrolase_2: Phosph 23.8 3.1E+02 0.0066 22.0 6.3 57 69-132 155-214 (216)
382 PRK00131 aroK shikimate kinase 23.5 1.1E+02 0.0024 23.3 3.5 35 69-106 3-37 (175)
383 PF00862 Sucrose_synth: Sucros 23.2 1.9E+02 0.0041 27.0 5.1 39 119-157 383-423 (550)
384 PRK08762 molybdopterin biosynt 23.2 5.4E+02 0.012 23.0 9.6 37 131-173 131-168 (376)
385 cd05312 NAD_bind_1_malic_enz N 23.0 2.6E+02 0.0056 23.9 5.7 78 72-153 27-123 (279)
386 cd01012 YcaC_related YcaC rela 22.9 3.4E+02 0.0073 20.5 7.4 46 125-173 78-123 (157)
387 cd01967 Nitrogenase_MoFe_alpha 22.9 4.1E+02 0.0088 23.9 7.5 73 69-144 87-169 (406)
388 cd02999 PDI_a_ERp44_like PDIa 22.8 2.2E+02 0.0047 19.6 4.5 39 68-106 18-57 (100)
389 cd02952 TRP14_like Human TRX-r 22.6 2E+02 0.0042 20.9 4.3 39 68-106 21-68 (119)
390 COG3887 Predicted signaling pr 22.6 2.3E+02 0.0051 27.0 5.6 99 69-173 258-377 (655)
391 cd07211 Pat_PNPLA8 Patatin-lik 22.4 95 0.0021 26.8 3.2 17 139-155 44-60 (308)
392 PRK10660 tilS tRNA(Ile)-lysidi 22.3 6.2E+02 0.013 23.3 8.6 79 71-154 49-129 (436)
393 PF00004 AAA: ATPase family as 22.0 1.8E+02 0.0039 20.7 4.3 35 73-110 1-35 (132)
394 KOG1202 Animal-type fatty acid 21.8 1.6E+02 0.0034 31.0 4.6 26 123-148 569-594 (2376)
395 PRK07877 hypothetical protein; 21.5 1.5E+02 0.0033 29.2 4.6 38 131-173 103-140 (722)
396 TIGR03709 PPK2_rel_1 polyphosp 21.3 1.1E+02 0.0024 25.8 3.1 37 69-107 55-93 (264)
397 PF07519 Tannase: Tannase and 21.1 2.3E+02 0.005 26.4 5.5 68 271-338 353-426 (474)
398 COG0622 Predicted phosphoester 20.7 1.6E+02 0.0035 23.0 3.8 29 136-176 110-138 (172)
399 cd00382 beta_CA Carbonic anhyd 20.6 1.3E+02 0.0028 21.8 3.0 30 121-150 44-73 (119)
400 PRK14194 bifunctional 5,10-met 20.6 1.5E+02 0.0033 25.5 3.9 35 123-157 143-183 (301)
401 PRK13982 bifunctional SbtC-lik 20.4 5.3E+02 0.011 24.1 7.5 60 69-131 180-247 (475)
402 PLN02282 phosphoglycerate kina 20.3 6.6E+02 0.014 22.8 8.0 78 84-173 44-121 (401)
403 COG4551 Predicted protein tyro 20.3 2.9E+02 0.0062 19.0 4.3 27 97-132 74-100 (109)
404 cd01981 Pchlide_reductase_B Pc 20.2 4.7E+02 0.01 23.9 7.3 43 69-112 85-130 (430)
405 cd00762 NAD_bind_malic_enz NAD 20.2 3.5E+02 0.0075 22.7 5.8 81 72-154 27-125 (254)
406 COG0373 HemA Glutamyl-tRNA red 20.1 3.4E+02 0.0074 24.7 6.1 51 116-172 158-210 (414)
No 1
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=3.8e-35 Score=251.84 Aligned_cols=266 Identities=14% Similarity=0.131 Sum_probs=174.3
Q ss_pred cceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--------
Q 045335 44 GVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-------- 115 (339)
Q Consensus 44 ~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-------- 115 (339)
++..|..++|..++|...|+ .+++|||+||++++...|..+++.|.+++ +|+++|+||||.|+.+
T Consensus 8 ~~~~~~~~~~~~i~y~~~G~----~~~~vlllHG~~~~~~~w~~~~~~L~~~~---~vi~~DlpG~G~S~~~~~~~~~~~ 80 (294)
T PLN02824 8 VETRTWRWKGYNIRYQRAGT----SGPALVLVHGFGGNADHWRKNTPVLAKSH---RVYAIDLLGYGYSDKPNPRSAPPN 80 (294)
T ss_pred CCCceEEEcCeEEEEEEcCC----CCCeEEEECCCCCChhHHHHHHHHHHhCC---eEEEEcCCCCCCCCCCcccccccc
Confidence 45668888999999999874 35899999999999999999999999886 9999999999999653
Q ss_pred -CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHh
Q 045335 116 -LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFL 194 (339)
Q Consensus 116 -~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (339)
.++++++++|+.+++++++.++++|+||||||.+++.+|.++|+ +|.+++++++++......... .........+
T Consensus 81 ~~~~~~~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~---~v~~lili~~~~~~~~~~~~~-~~~~~~~~~~ 156 (294)
T PLN02824 81 SFYTFETWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPE---LVRGVMLINISLRGLHIKKQP-WLGRPFIKAF 156 (294)
T ss_pred ccCCHHHHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChh---heeEEEEECCCcccccccccc-hhhhHHHHHH
Confidence 48999999999999999999999999999999999999999999 788999998764322111110 0111111111
Q ss_pred hcCCcccc---------ChHHHHHHHHHcCC--chHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhh
Q 045335 195 SKLPKEVI---------SKQEVVNALIQQGF--SKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWK 263 (339)
Q Consensus 195 ~~~~~~~~---------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (339)
........ ........+....+ ...........+...... .....................
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 228 (294)
T PLN02824 157 QNLLRETAVGKAFFKSVATPETVKNILCQCYHDDSAVTDELVEAILRPGLE--------PGAVDVFLDFISYSGGPLPEE 228 (294)
T ss_pred HHHHhchhHHHHHHHhhcCHHHHHHHHHHhccChhhccHHHHHHHHhccCC--------chHHHHHHHHhccccccchHH
Confidence 10000000 00000011100000 000000000111100000 000111111111111112234
Q ss_pred hhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 264 LVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 264 ~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.+++++ +|+++|+|++| .+++....+.+.+ ..+++++++++++||++++|+|++|++.|.+|+++
T Consensus 229 ~l~~i~--~P~lvi~G~~D-------~~~~~~~~~~~~~-~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 293 (294)
T PLN02824 229 LLPAVK--CPVLIAWGEKD-------PWEPVELGRAYAN-FDAVEDFIVLPGVGHCPQDEAPELVNPLIESFVAR 293 (294)
T ss_pred HHhhcC--CCeEEEEecCC-------CCCChHHHHHHHh-cCCccceEEeCCCCCChhhhCHHHHHHHHHHHHhc
Confidence 466666 99999999997 4566666666555 46889999999999999999999999999999976
No 2
>PRK03592 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=1.7e-35 Score=254.09 Aligned_cols=272 Identities=15% Similarity=0.165 Sum_probs=174.8
Q ss_pred CcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHH
Q 045335 43 SGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVA 120 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~ 120 (339)
+.+..+...+|..++|...|. +++|||+||++++...|..+++.|.+.+ +|+++|+||||.|+.+ .++++
T Consensus 6 ~~~~~~~~~~g~~i~y~~~G~-----g~~vvllHG~~~~~~~w~~~~~~L~~~~---~via~D~~G~G~S~~~~~~~~~~ 77 (295)
T PRK03592 6 PGEMRRVEVLGSRMAYIETGE-----GDPIVFLHGNPTSSYLWRNIIPHLAGLG---RCLAPDLIGMGASDKPDIDYTFA 77 (295)
T ss_pred CCcceEEEECCEEEEEEEeCC-----CCEEEEECCCCCCHHHHHHHHHHHhhCC---EEEEEcCCCCCCCCCCCCCCCHH
Confidence 455667788999999999875 6899999999999999999999999985 9999999999999654 38999
Q ss_pred HHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCC--
Q 045335 121 STALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLP-- 198 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 198 (339)
++++|+.++++++++++++|+||||||.+|+.+|.++|+ +|.+++++++......... ...........+....
T Consensus 78 ~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~---~v~~lil~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 153 (295)
T PRK03592 78 DHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPD---RVRGIAFMEAIVRPMTWDD-FPPAVRELFQALRSPGEG 153 (295)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChh---heeEEEEECCCCCCcchhh-cchhHHHHHHHHhCcccc
Confidence 999999999999999999999999999999999999999 7889999987432211110 0001111122222111
Q ss_pred cccc-ChHHHHHHHHHcC----CchHHHHHHHHhccCCCCCCCCCCccce--echHHHHHHHhhhhhhhhhhhhhcCCCC
Q 045335 199 KEVI-SKQEVVNALIQQG----FSKDVAQWVVTNLKPAASFGASSSFSWV--FDLEGIAEMYQSYDETNLWKLVENLPQG 271 (339)
Q Consensus 199 ~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (339)
.... ........+.... ..++....+...+...... .....|. ............. ..+....+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~i~-- 228 (295)
T PRK03592 154 EEMVLEENVFIERVLPGSILRPLSDEEMAVYRRPFPTPESR--RPTLSWPRELPIDGEPADVVAL-VEEYAQWLATSD-- 228 (295)
T ss_pred cccccchhhHHhhcccCcccccCCHHHHHHHHhhcCCchhh--hhhhhhhhhcCCCCcchhhHhh-hhHhHHHhccCC--
Confidence 0000 0011111111110 1111111111111110000 0000000 0000000000000 011223445555
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+|+++|+|+.| .++++....++.....+++++++++++||++++|+|++|++.|.+|+++
T Consensus 229 ~P~lii~G~~D-------~~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~v~~~i~~fl~~ 288 (295)
T PRK03592 229 VPKLLINAEPG-------AILTTGAIRDWCRSWPNQLEITVFGAGLHFAQEDSPEEIGAAIAAWLRR 288 (295)
T ss_pred CCeEEEeccCC-------cccCcHHHHHHHHHhhhhcceeeccCcchhhhhcCHHHHHHHHHHHHHH
Confidence 99999999987 4554555656666557899999999999999999999999999999975
No 3
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=100.00 E-value=4.9e-34 Score=250.49 Aligned_cols=269 Identities=17% Similarity=0.198 Sum_probs=167.4
Q ss_pred eEEeeeCe-eEEEeeccCC-CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHH
Q 045335 47 AYDLIQGT-LVRWSSMMDK-SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVAS 121 (339)
Q Consensus 47 ~~~~~~g~-~l~~~~~g~~-~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~ 121 (339)
.+...+|. +++|...|+. ..+++|+|||+||++++...|.++++.|.+.| +|+++|+||||.|+.+ .+++++
T Consensus 64 ~~~~~~g~~~i~Y~~~G~g~~~~~gp~lvllHG~~~~~~~w~~~~~~L~~~~---~via~Dl~G~G~S~~~~~~~~~~~~ 140 (360)
T PLN02679 64 KKWKWKGEYSINYLVKGSPEVTSSGPPVLLVHGFGASIPHWRRNIGVLAKNY---TVYAIDLLGFGASDKPPGFSYTMET 140 (360)
T ss_pred ceEEECCceeEEEEEecCcccCCCCCeEEEECCCCCCHHHHHHHHHHHhcCC---EEEEECCCCCCCCCCCCCccccHHH
Confidence 35556677 9999988852 11246899999999999999999999998765 9999999999999654 489999
Q ss_pred HHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHH-ccCCCCCCceEEEEeccCCCCcCCCCCCCChH-------HHHHH
Q 045335 122 TALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQ-AAKPLARPVRVWVLDATPGKVRAGGDGEDHPA-------ELIHF 193 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~-~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~-------~~~~~ 193 (339)
+++++.++++++++++++||||||||.+++.+|+. +|+ +|.++|+++++......... ..... .+..+
T Consensus 141 ~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~---rV~~LVLi~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 216 (360)
T PLN02679 141 WAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRD---LVRGLVLLNCAGGMNNKAVV-DDWRIKLLLPLLWLIDF 216 (360)
T ss_pred HHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChh---hcCEEEEECCcccccccccc-chHHHhhhcchHHHHHH
Confidence 99999999999999999999999999999999874 799 78899999876432211100 00000 00001
Q ss_pred hhcCCccccChHHHHHHHHHcCC-chHHHHHHHHhccCCCCCC--C----CCCccceechHHHHHHHhhhhhhhhhhhhh
Q 045335 194 LSKLPKEVISKQEVVNALIQQGF-SKDVAQWVVTNLKPAASFG--A----SSSFSWVFDLEGIAEMYQSYDETNLWKLVE 266 (339)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (339)
+...+ .....+..... ......++........... . ............+..........+....+.
T Consensus 217 ~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 289 (360)
T PLN02679 217 LLKQR-------GIASALFNRVKQRDNLKNILLSVYGNKEAVDDELVEIIRGPADDEGALDAFVSIVTGPPGPNPIKLIP 289 (360)
T ss_pred Hhhch-------hhHHHHHHHhcCHHHHHHHHHHhccCcccCCHHHHHHHHhhccCCChHHHHHHHHhcCCCCCHHHHhh
Confidence 00000 00000000000 0001111110000000000 0 000000001122222221111223345566
Q ss_pred cCCCCceeeEEeccchhhhhhhhhHHHHHH-----HHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhcC
Q 045335 267 NLPQGVHVNFLKAERSLHRWALEDIQRIHA-----AEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 267 ~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~-----~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
.++ +|+|+|+|++|. ++++.. ..++.+ .+|++++++++++||++++|+|++|++.|.+||+++
T Consensus 290 ~i~--~PtLii~G~~D~-------~~p~~~~~~~~~~~l~~-~ip~~~l~~i~~aGH~~~~E~Pe~~~~~I~~FL~~~ 357 (360)
T PLN02679 290 RIS--LPILVLWGDQDP-------FTPLDGPVGKYFSSLPS-QLPNVTLYVLEGVGHCPHDDRPDLVHEKLLPWLAQL 357 (360)
T ss_pred hcC--CCEEEEEeCCCC-------CcCchhhHHHHHHhhhc-cCCceEEEEcCCCCCCccccCHHHHHHHHHHHHHhc
Confidence 666 999999999983 444431 233444 369999999999999999999999999999999763
No 4
>KOG4178 consensus Soluble epoxide hydrolase [Lipid transport and metabolism]
Probab=100.00 E-value=2.7e-34 Score=235.24 Aligned_cols=271 Identities=15% Similarity=0.160 Sum_probs=178.7
Q ss_pred cCCCCCcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC-
Q 045335 38 DVAEPSGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL- 116 (339)
Q Consensus 38 ~~~~~~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~- 116 (339)
......+...|.+++|..++|...|. +++|.|+++||++.+..+|+.++..|+.. ||+|+++|+||+|.|+.+.
T Consensus 16 ~~~~~~~~hk~~~~~gI~~h~~e~g~---~~gP~illlHGfPe~wyswr~q~~~la~~--~~rviA~DlrGyG~Sd~P~~ 90 (322)
T KOG4178|consen 16 PLNLSAISHKFVTYKGIRLHYVEGGP---GDGPIVLLLHGFPESWYSWRHQIPGLASR--GYRVIAPDLRGYGFSDAPPH 90 (322)
T ss_pred ccChhhcceeeEEEccEEEEEEeecC---CCCCEEEEEccCCccchhhhhhhhhhhhc--ceEEEecCCCCCCCCCCCCC
Confidence 34446677889999998888888765 46999999999999999999999999998 6899999999999996653
Q ss_pred ---CCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCC---CCCCCChHHH
Q 045335 117 ---TTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAG---GDGEDHPAEL 190 (339)
Q Consensus 117 ---~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~---~~~~~~~~~~ 190 (339)
||+..++.|+..++++|+.++++++||+||+++|+.+|..+|+ +|.+++.++.+....... .........+
T Consensus 91 ~~~Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Pe---rv~~lv~~nv~~~~p~~~~~~~~~~~f~~~~ 167 (322)
T KOG4178|consen 91 ISEYTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPE---RVDGLVTLNVPFPNPKLKPLDSSKAIFGKSY 167 (322)
T ss_pred cceeeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChh---hcceEEEecCCCCCcccchhhhhccccCccc
Confidence 8999999999999999999999999999999999999999999 788999998775511100 0000000000
Q ss_pred HHHhhcCC---ccc---cChHHHHHHHHHcCCc-----------------hHHHHHHHHhccCCCCCCCCCCccceechH
Q 045335 191 IHFLSKLP---KEV---ISKQEVVNALIQQGFS-----------------KDVAQWVVTNLKPAASFGASSSFSWVFDLE 247 (339)
Q Consensus 191 ~~~~~~~~---~~~---~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (339)
.....+.+ +.. ...+.+...+..+... .+-.+++...+.... +.
T Consensus 168 y~~~fQ~~~~~E~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~t~edi~~~~~~f~~~g-------------~~ 234 (322)
T KOG4178|consen 168 YICLFQEPGKPETELSKDDTEMLVKTFRTRKTPGPLIVPKQPNENPLWLTEEDIAFYVSKFQIDG-------------FT 234 (322)
T ss_pred eeEeccccCcchhhhccchhHHhHHhhhccccCCccccCCCCCCccchhhHHHHHHHHhcccccc-------------cc
Confidence 00000000 000 0001111111111100 011111111121111 22
Q ss_pred HHHHHHhhhhhhh--hhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCe-eEEEecCCCccccccC
Q 045335 248 GIAEMYQSYDETN--LWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGV-EMHVLEDAGHWVHADN 324 (339)
Q Consensus 248 ~~~~~~~~~~~~~--~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~ 324 (339)
...++++.+.+.. .-..+.++. +|+++|.|+.|.+. +.....+..++..|+. +.++++|+||+++.|+
T Consensus 235 gplNyyrn~~r~w~a~~~~~~~i~--iPv~fi~G~~D~v~-------~~p~~~~~~rk~vp~l~~~vv~~~~gH~vqqe~ 305 (322)
T KOG4178|consen 235 GPLNYYRNFRRNWEAAPWALAKIT--IPVLFIWGDLDPVL-------PYPIFGELYRKDVPRLTERVVIEGIGHFVQQEK 305 (322)
T ss_pred ccchhhHHHhhCchhccccccccc--cceEEEEecCcccc-------cchhHHHHHHHhhccccceEEecCCcccccccC
Confidence 2223333333221 112333444 99999999998654 2223334444445666 8899999999999999
Q ss_pred hhHHHHHHHHhhhc
Q 045335 325 PDGLFRILTSSFEG 338 (339)
Q Consensus 325 p~~~~~~i~~fl~~ 338 (339)
|++|+++|.+|+++
T Consensus 306 p~~v~~~i~~f~~~ 319 (322)
T KOG4178|consen 306 PQEVNQAILGFINS 319 (322)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
No 5
>PRK00870 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=2.7e-33 Score=241.11 Aligned_cols=267 Identities=15% Similarity=0.110 Sum_probs=169.0
Q ss_pred CCCcceeEEeeeC-----eeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC
Q 045335 41 EPSGVLAYDLIQG-----TLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG 115 (339)
Q Consensus 41 ~~~~~~~~~~~~g-----~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~ 115 (339)
..+....|..+++ .+++|...|. +++|+|||+||++++...|..+++.|.+. ||+|+++|+||||.|..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~y~~~G~---~~~~~lvliHG~~~~~~~w~~~~~~L~~~--gy~vi~~Dl~G~G~S~~~ 90 (302)
T PRK00870 16 DYPFAPHYVDVDDGDGGPLRMHYVDEGP---ADGPPVLLLHGEPSWSYLYRKMIPILAAA--GHRVIAPDLIGFGRSDKP 90 (302)
T ss_pred CCCCCceeEeecCCCCceEEEEEEecCC---CCCCEEEEECCCCCchhhHHHHHHHHHhC--CCEEEEECCCCCCCCCCC
Confidence 3445667777887 7899998775 24789999999999999999999999876 679999999999999643
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHH
Q 045335 116 ----LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELI 191 (339)
Q Consensus 116 ----~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~ 191 (339)
.++++++++|+.++++++++++++|+||||||.+++.+|.++|+ +|.+++++++........ ......
T Consensus 91 ~~~~~~~~~~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~-----~~~~~~ 162 (302)
T PRK00870 91 TRREDYTYARHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPD---RFARLVVANTGLPTGDGP-----MPDAFW 162 (302)
T ss_pred CCcccCCHHHHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChh---heeEEEEeCCCCCCcccc-----chHHHh
Confidence 37999999999999999999999999999999999999999999 778999887532111100 000111
Q ss_pred HHhhcCCccccChHHHHHHHHHc----CCchHHHHHHHHhccCCCCCCCCCCcc-c-eechHHHHHHHhhhhhhhhhhhh
Q 045335 192 HFLSKLPKEVISKQEVVNALIQQ----GFSKDVAQWVVTNLKPAASFGASSSFS-W-VFDLEGIAEMYQSYDETNLWKLV 265 (339)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~ 265 (339)
.+.. ...... ......+... .........+...............+. + ....... ......+.+..+
T Consensus 163 ~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~l 235 (302)
T PRK00870 163 AWRA-FSQYSP--VLPVGRLVNGGTVRDLSDAVRAAYDAPFPDESYKAGARAFPLLVPTSPDDP----AVAANRAAWAVL 235 (302)
T ss_pred hhhc-ccccCc--hhhHHHHhhccccccCCHHHHHHhhcccCChhhhcchhhhhhcCCCCCCCc----chHHHHHHHHhh
Confidence 1110 000000 0000111100 011111111100000000000000000 0 0000000 000111234455
Q ss_pred hcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCee---EEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 266 ENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVE---MHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 266 ~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~---~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.++. +|+++|+|++| .+++... +++.+. +++.+ +.+++++||++++|+|++|++.|.+||++
T Consensus 236 ~~i~--~P~lii~G~~D-------~~~~~~~-~~~~~~-~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~l~~fl~~ 300 (302)
T PRK00870 236 ERWD--KPFLTAFSDSD-------PITGGGD-AILQKR-IPGAAGQPHPTIKGAGHFLQEDSGEELAEAVLEFIRA 300 (302)
T ss_pred hcCC--CceEEEecCCC-------CcccCch-HHHHhh-cccccccceeeecCCCccchhhChHHHHHHHHHHHhc
Confidence 6666 99999999997 4455443 555554 67776 88999999999999999999999999975
No 6
>PRK10673 acyl-CoA esterase; Provisional
Probab=100.00 E-value=8.4e-33 Score=232.58 Aligned_cols=251 Identities=22% Similarity=0.379 Sum_probs=171.4
Q ss_pred eEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC-CCCCHHHHHHHHHHHHHHc
Q 045335 55 LVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG-GLTTVASTALDVLKLVAQL 133 (339)
Q Consensus 55 ~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~-~~~~~~~~a~dl~~~l~~l 133 (339)
++.|+.++..+++++|+|||+||++++...|..+...|.+.| +|+++|+||||.|.. ..++++++++|+.++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~iv~lhG~~~~~~~~~~~~~~l~~~~---~vi~~D~~G~G~s~~~~~~~~~~~~~d~~~~l~~l 78 (255)
T PRK10673 2 KLNIRAQTAQNPHNNSPIVLVHGLFGSLDNLGVLARDLVNDH---DIIQVDMRNHGLSPRDPVMNYPAMAQDLLDTLDAL 78 (255)
T ss_pred cceeeeccCCCCCCCCCEEEECCCCCchhHHHHHHHHHhhCC---eEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHc
Confidence 456777666666788999999999999999999999998765 999999999999964 4589999999999999999
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCc-cccChHHHHHHHH
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPK-EVISKQEVVNALI 212 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 212 (339)
+.++++|+||||||.+++.+|.++|+ +|.+++++++++...... ........+..... ...........+.
T Consensus 79 ~~~~~~lvGhS~Gg~va~~~a~~~~~---~v~~lvli~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (255)
T PRK10673 79 QIEKATFIGHSMGGKAVMALTALAPD---RIDKLVAIDIAPVDYHVR-----RHDEIFAAINAVSEAGATTRQQAAAIMR 150 (255)
T ss_pred CCCceEEEEECHHHHHHHHHHHhCHh---hcceEEEEecCCCCccch-----hhHHHHHHHHHhhhcccccHHHHHHHHH
Confidence 99999999999999999999999999 788999998765433211 01111111111111 1111111111111
Q ss_pred HcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHH
Q 045335 213 QQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQ 292 (339)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~ 292 (339)
..........+....+... .|..........+.... .+..+..++ +|+++|.|++| ..+
T Consensus 151 ~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~---~~~~~~~~~--~P~l~i~G~~D-------~~~ 209 (255)
T PRK10673 151 QHLNEEGVIQFLLKSFVDG---------EWRFNVPVLWDQYPHIV---GWEKIPAWP--HPALFIRGGNS-------PYV 209 (255)
T ss_pred HhcCCHHHHHHHHhcCCcc---------eeEeeHHHHHHhHHHHh---CCcccCCCC--CCeEEEECCCC-------CCC
Confidence 1111122222332222211 11222222222222211 123344444 89999999997 456
Q ss_pred HHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 293 RIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+....+.+.+. +|++++++++++||++++|+|+++++.|.+||++
T Consensus 210 ~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~~~p~~~~~~l~~fl~~ 254 (255)
T PRK10673 210 TEAYRDDLLAQ-FPQARAHVIAGAGHWVHAEKPDAVLRAIRRYLND 254 (255)
T ss_pred CHHHHHHHHHh-CCCcEEEEeCCCCCeeeccCHHHHHHHHHHHHhc
Confidence 66767777665 6999999999999999999999999999999975
No 7
>KOG2382 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=100.00 E-value=1.2e-32 Score=225.78 Aligned_cols=268 Identities=30% Similarity=0.491 Sum_probs=222.0
Q ss_pred CcceeEEee-eCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC-CCCCHH
Q 045335 43 SGVLAYDLI-QGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG-GLTTVA 120 (339)
Q Consensus 43 ~~~~~~~~~-~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~-~~~~~~ 120 (339)
+.++.|..+ .+ .+-...|+++++||+.++...|+.+...|+... +-.|+++|.|.||.|+. ..++..
T Consensus 35 p~~l~y~~~~~~----------~~~~~~Pp~i~lHGl~GS~~Nw~sv~k~Ls~~l-~~~v~~vd~RnHG~Sp~~~~h~~~ 103 (315)
T KOG2382|consen 35 PVRLAYDSVYSS----------ENLERAPPAIILHGLLGSKENWRSVAKNLSRKL-GRDVYAVDVRNHGSSPKITVHNYE 103 (315)
T ss_pred Ccccceeeeecc----------cccCCCCceEEecccccCCCCHHHHHHHhcccc-cCceEEEecccCCCCccccccCHH
Confidence 677777765 22 233468999999999999999999999999988 77999999999999965 458999
Q ss_pred HHHHHHHHHHHHcC----CCceEEEEEchhH-HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhh
Q 045335 121 STALDVLKLVAQLR----ITPRVLVGHSFGG-KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLS 195 (339)
Q Consensus 121 ~~a~dl~~~l~~l~----~~~~~lvGhS~Gg-~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (339)
.+++|+..||+..+ ..+++++|||||| .+++..+..+|+ .+.++++++.+|+..... ......++..+.
T Consensus 104 ~ma~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~---~~~rliv~D~sP~~~~~~---~~e~~e~i~~m~ 177 (315)
T KOG2382|consen 104 AMAEDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPD---LIERLIVEDISPGGVGRS---YGEYRELIKAMI 177 (315)
T ss_pred HHHHHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCc---ccceeEEEecCCccCCcc---cchHHHHHHHHH
Confidence 99999999999984 5789999999999 888888889999 778999999998743322 234566777777
Q ss_pred cCCcc---ccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCc
Q 045335 196 KLPKE---VISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGV 272 (339)
Q Consensus 196 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (339)
..+.. ...+.+..+.+..........+|+..++.+. .....+.|.+++..+...+..+....+|..+...+...
T Consensus 178 ~~d~~~~~~~~rke~~~~l~~~~~d~~~~~fi~~nl~~~---~~~~s~~w~~nl~~i~~~~~~~~~~s~~~~l~~~~~~~ 254 (315)
T KOG2382|consen 178 QLDLSIGVSRGRKEALKSLIEVGFDNLVRQFILTNLKKS---PSDGSFLWRVNLDSIASLLDEYEILSYWADLEDGPYTG 254 (315)
T ss_pred hccccccccccHHHHHHHHHHHhcchHHHHHHHHhcCcC---CCCCceEEEeCHHHHHHHHHHHHhhccccccccccccc
Confidence 77665 5777888888888788888899999999862 22788999999999999999876666777776666668
Q ss_pred eeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 273 HVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 273 pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
||+++.|.++ ..++.+...++.+. +|+++++.++++||++|.|+|++|++.|.+|++.
T Consensus 255 pvlfi~g~~S-------~fv~~~~~~~~~~~-fp~~e~~~ld~aGHwVh~E~P~~~~~~i~~Fl~~ 312 (315)
T KOG2382|consen 255 PVLFIKGLQS-------KFVPDEHYPRMEKI-FPNVEVHELDEAGHWVHLEKPEEFIESISEFLEE 312 (315)
T ss_pred ceeEEecCCC-------CCcChhHHHHHHHh-ccchheeecccCCceeecCCHHHHHHHHHHHhcc
Confidence 9999999998 45566655566554 7999999999999999999999999999999864
No 8
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=100.00 E-value=2.9e-33 Score=237.92 Aligned_cols=254 Identities=13% Similarity=0.162 Sum_probs=169.1
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHHH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTAL 124 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a~ 124 (339)
.+..++|.+++|...+. + +++++|||+||++++...|..+++.|.+.| +|+++|+||||.|+.+ .++++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~-~-~~~~plvllHG~~~~~~~w~~~~~~L~~~~---~vi~~Dl~G~G~S~~~~~~~~~~~~~~ 79 (276)
T TIGR02240 5 RTIDLDGQSIRTAVRPG-K-EGLTPLLIFNGIGANLELVFPFIEALDPDL---EVIAFDVPGVGGSSTPRHPYRFPGLAK 79 (276)
T ss_pred EEeccCCcEEEEEEecC-C-CCCCcEEEEeCCCcchHHHHHHHHHhccCc---eEEEECCCCCCCCCCCCCcCcHHHHHH
Confidence 34566888999977532 1 245799999999999999999999998765 9999999999999654 478999999
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccCh
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISK 204 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (339)
++.++++++++++++||||||||.+++.+|.++|+ +|.++++++++......... .... ..+.. .......
T Consensus 80 ~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~---~v~~lvl~~~~~~~~~~~~~----~~~~-~~~~~-~~~~~~~ 150 (276)
T TIGR02240 80 LAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPE---RCKKLILAATAAGAVMVPGK----PKVL-MMMAS-PRRYIQP 150 (276)
T ss_pred HHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHH---HhhheEEeccCCccccCCCc----hhHH-HHhcC-chhhhcc
Confidence 99999999999999999999999999999999999 78899999887543211110 0110 00100 0000000
Q ss_pred ---HHHHHHHHHcCC--chHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEec
Q 045335 205 ---QEVVNALIQQGF--SKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKA 279 (339)
Q Consensus 205 ---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g 279 (339)
......+..... .+.............. . ........... ..+....+.+++ +|+++|+|
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------~~~~~~~~~~~-~~~~~~~l~~i~--~P~lii~G 215 (276)
T TIGR02240 151 SHGIHIAPDIYGGAFRRDPELAMAHASKVRSGG------K------LGYYWQLFAGL-GWTSIHWLHKIQ--QPTLVLAG 215 (276)
T ss_pred ccccchhhhhccceeeccchhhhhhhhhcccCC------C------chHHHHHHHHc-CCchhhHhhcCC--CCEEEEEe
Confidence 000000000000 0010101111010000 0 00011111111 112234466676 99999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 280 ERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 280 ~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+.| .+++++..+++.+. +|+++++++++ ||++++|+|++|++.|.+|+++
T Consensus 216 ~~D-------~~v~~~~~~~l~~~-~~~~~~~~i~~-gH~~~~e~p~~~~~~i~~fl~~ 265 (276)
T TIGR02240 216 DDD-------PIIPLINMRLLAWR-IPNAELHIIDD-GHLFLITRAEAVAPIIMKFLAE 265 (276)
T ss_pred CCC-------CcCCHHHHHHHHHh-CCCCEEEEEcC-CCchhhccHHHHHHHHHHHHHH
Confidence 997 56788877778776 69999999986 9999999999999999999975
No 9
>PRK10349 carboxylesterase BioH; Provisional
Probab=100.00 E-value=8e-33 Score=232.73 Aligned_cols=245 Identities=15% Similarity=0.146 Sum_probs=158.0
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-CCCHHHHHHHHHHHHHHcC
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-LTTVASTALDVLKLVAQLR 134 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~~~~~~~a~dl~~~l~~l~ 134 (339)
++|..+|. +.|+|||+||++++...|..+++.|.+.| +|+++|+||||.|... .++++++++++.+ +.
T Consensus 4 ~~y~~~G~----g~~~ivllHG~~~~~~~w~~~~~~L~~~~---~vi~~Dl~G~G~S~~~~~~~~~~~~~~l~~----~~ 72 (256)
T PRK10349 4 IWWQTKGQ----GNVHLVLLHGWGLNAEVWRCIDEELSSHF---TLHLVDLPGFGRSRGFGALSLADMAEAVLQ----QA 72 (256)
T ss_pred cchhhcCC----CCCeEEEECCCCCChhHHHHHHHHHhcCC---EEEEecCCCCCCCCCCCCCCHHHHHHHHHh----cC
Confidence 56777664 23579999999999999999999998876 9999999999999543 4788888777653 56
Q ss_pred CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHH-
Q 045335 135 ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQ- 213 (339)
Q Consensus 135 ~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 213 (339)
+++++||||||||.+++.+|.++|+ +|.+++++++++..................+...+.. ........+..
T Consensus 73 ~~~~~lvGhS~Gg~ia~~~a~~~p~---~v~~lili~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 146 (256)
T PRK10349 73 PDKAIWLGWSLGGLVASQIALTHPE---RVQALVTVASSPCFSARDEWPGIKPDVLAGFQQQLSD---DFQRTVERFLAL 146 (256)
T ss_pred CCCeEEEEECHHHHHHHHHHHhChH---hhheEEEecCccceecCCCCCcccHHHHHHHHHHHHh---chHHHHHHHHHH
Confidence 7899999999999999999999999 7889999988654322111000011111111111100 00111111111
Q ss_pred ----cC-CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhh
Q 045335 214 ----QG-FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWAL 288 (339)
Q Consensus 214 ----~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~ 288 (339)
.. .......+ ........ ..........+..+...+....+.+++ +|+++++|+.|
T Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~i~--~P~lii~G~~D------ 207 (256)
T PRK10349 147 QTMGTETARQDARAL-KKTVLALP----------MPEVDVLNGGLEILKTVDLRQPLQNVS--MPFLRLYGYLD------ 207 (256)
T ss_pred HHccCchHHHHHHHH-HHHhhccC----------CCcHHHHHHHHHHHHhCccHHHHhhcC--CCeEEEecCCC------
Confidence 00 00111111 11111100 000111222222233345566777777 99999999997
Q ss_pred hhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 289 EDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 289 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.+++.+..+.+.+. +++++++++|++||++++|+|++|++.|.+|-+.
T Consensus 208 -~~~~~~~~~~~~~~-i~~~~~~~i~~~gH~~~~e~p~~f~~~l~~~~~~ 255 (256)
T PRK10349 208 -GLVPRKVVPMLDKL-WPHSESYIFAKAAHAPFISHPAEFCHLLVALKQR 255 (256)
T ss_pred -ccCCHHHHHHHHHh-CCCCeEEEeCCCCCCccccCHHHHHHHHHHHhcc
Confidence 45566666655554 7999999999999999999999999999999764
No 10
>PRK03204 haloalkane dehalogenase; Provisional
Probab=100.00 E-value=2.9e-32 Score=232.27 Aligned_cols=264 Identities=14% Similarity=0.101 Sum_probs=164.2
Q ss_pred CCCcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CC
Q 045335 41 EPSGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LT 117 (339)
Q Consensus 41 ~~~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~ 117 (339)
..+..-.+..++|.+++|...|. +++|||+||++.+...|..+++.|.+.| +|+++|+||||.|+.+ .+
T Consensus 11 ~~~~~~~~~~~~~~~i~y~~~G~-----~~~iv~lHG~~~~~~~~~~~~~~l~~~~---~vi~~D~~G~G~S~~~~~~~~ 82 (286)
T PRK03204 11 LYPFESRWFDSSRGRIHYIDEGT-----GPPILLCHGNPTWSFLYRDIIVALRDRF---RCVAPDYLGFGLSERPSGFGY 82 (286)
T ss_pred cccccceEEEcCCcEEEEEECCC-----CCEEEEECCCCccHHHHHHHHHHHhCCc---EEEEECCCCCCCCCCCCcccc
Confidence 34455667778999999998874 6899999999999999999999998765 9999999999999653 47
Q ss_pred CHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcC
Q 045335 118 TVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKL 197 (339)
Q Consensus 118 ~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (339)
+++++++++.+++++++.++++++||||||.+++.+|..+|+ +|.++|++++... .... .....+.......
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~---~v~~lvl~~~~~~--~~~~---~~~~~~~~~~~~~ 154 (286)
T PRK03204 83 QIDEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERAD---RVRGVVLGNTWFW--PADT---LAMKAFSRVMSSP 154 (286)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChh---heeEEEEECcccc--CCCc---hhHHHHHHHhccc
Confidence 899999999999999999999999999999999999999999 7789988765321 1100 0001111111110
Q ss_pred Ccc--ccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhh--h---hhhhhhhhcCCC
Q 045335 198 PKE--VISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYD--E---TNLWKLVENLPQ 270 (339)
Q Consensus 198 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~ 270 (339)
+.. ..........+................+...... . . ...........+. . .+....+.....
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (286)
T PRK03204 155 PVQYAILRRNFFVERLIPAGTEHRPSSAVMAHYRAVQPN---A--A---ARRGVAEMPKQILAARPLLARLAREVPATLG 226 (286)
T ss_pred cchhhhhhhhHHHHHhccccccCCCCHHHHHHhcCCCCC---H--H---HHHHHHHHHHhcchhhHHHHHhhhhhhhhcC
Confidence 000 0000001111111000000000000000000000 0 0 0000100000000 0 001111111212
Q ss_pred CceeeEEeccchhhhhhhhhHHHHHH-HHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhh
Q 045335 271 GVHVNFLKAERSLHRWALEDIQRIHA-AEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSF 336 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~g~~d~~~~~~-~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 336 (339)
.+|+++|+|++| .++++.. .+.+.+ .+|++++++++++||++++|+|++|++.|.+||
T Consensus 227 ~~PtliI~G~~D-------~~~~~~~~~~~~~~-~ip~~~~~~i~~aGH~~~~e~Pe~~~~~i~~~~ 285 (286)
T PRK03204 227 TKPTLLVWGMKD-------VAFRPKTILPRLRA-TFPDHVLVELPNAKHFIQEDAPDRIAAAIIERF 285 (286)
T ss_pred CCCeEEEecCCC-------cccCcHHHHHHHHH-hcCCCeEEEcCCCcccccccCHHHHHHHHHHhc
Confidence 499999999997 3444443 444445 479999999999999999999999999999997
No 11
>PLN02965 Probable pheophorbidase
Probab=100.00 E-value=5.6e-32 Score=227.23 Aligned_cols=231 Identities=18% Similarity=0.161 Sum_probs=152.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHHHHHHHHHHHHHcCC-CceEEEEEch
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVASTALDVLKLVAQLRI-TPRVLVGHSF 145 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~~a~dl~~~l~~l~~-~~~~lvGhS~ 145 (339)
.+|||+||++.+...|..+++.|.+. ||+|+++|+||||.|+.+ .++++++++|+.+++++++. ++++||||||
T Consensus 4 ~~vvllHG~~~~~~~w~~~~~~L~~~--~~~via~Dl~G~G~S~~~~~~~~~~~~~a~dl~~~l~~l~~~~~~~lvGhSm 81 (255)
T PLN02965 4 IHFVFVHGASHGAWCWYKLATLLDAA--GFKSTCVDLTGAGISLTDSNTVSSSDQYNRPLFALLSDLPPDHKVILVGHSI 81 (255)
T ss_pred eEEEEECCCCCCcCcHHHHHHHHhhC--CceEEEecCCcCCCCCCCccccCCHHHHHHHHHHHHHhcCCCCCEEEEecCc
Confidence 35999999999999999999999765 579999999999999642 47899999999999999987 4999999999
Q ss_pred hHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcC-----------Ccccc----ChHHHHHH
Q 045335 146 GGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKL-----------PKEVI----SKQEVVNA 210 (339)
Q Consensus 146 Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~----~~~~~~~~ 210 (339)
||.+++.+|.++|+ +|.++|++++.+...... ............ ..... ........
T Consensus 82 GG~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (255)
T PLN02965 82 GGGSVTEALCKFTD---KISMAIYVAAAMVKPGSI-----ISPRLKNVMEGTEKIWDYTFGEGPDKPPTGIMMKPEFVRH 153 (255)
T ss_pred chHHHHHHHHhCch---heeEEEEEccccCCCCCC-----ccHHHHhhhhccccceeeeeccCCCCCcchhhcCHHHHHH
Confidence 99999999999999 778999988763211000 001111000000 00000 00001111
Q ss_pred HHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhh
Q 045335 211 LIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALED 290 (339)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d 290 (339)
.................+..... .... ... +....+..++ +|++++.|++| .
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~-~~~-----~~~~~~~~i~--vP~lvi~g~~D-------~ 205 (255)
T PLN02965 154 YYYNQSPLEDYTLSSKLLRPAPV-------------RAFQ-DLD-----KLPPNPEAEK--VPRVYIKTAKD-------N 205 (255)
T ss_pred HHhcCCCHHHHHHHHHhcCCCCC-------------cchh-hhh-----hccchhhcCC--CCEEEEEcCCC-------C
Confidence 11011111111111111111100 0000 000 0111233444 99999999997 4
Q ss_pred HHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhcC
Q 045335 291 IQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
++++...+.+.+. +|++++++++++||++++|+|++|++.|.+|++.+
T Consensus 206 ~~~~~~~~~~~~~-~~~a~~~~i~~~GH~~~~e~p~~v~~~l~~~~~~~ 253 (255)
T PLN02965 206 LFDPVRQDVMVEN-WPPAQTYVLEDSDHSAFFSVPTTLFQYLLQAVSSL 253 (255)
T ss_pred CCCHHHHHHHHHh-CCcceEEEecCCCCchhhcCHHHHHHHHHHHHHHh
Confidence 6677777777776 79999999999999999999999999999998754
No 12
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=100.00 E-value=1.8e-31 Score=237.42 Aligned_cols=276 Identities=11% Similarity=0.113 Sum_probs=170.7
Q ss_pred eeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHH-HHHHHHHhC-CCceEEEEeeCCCCCCCCC---CCCHH
Q 045335 46 LAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGT-FARRLARAY-PTWQTCDVMVIPHQSRKGG---LTTVA 120 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~-~~~~L~~~~-~g~~vi~~D~~G~G~S~~~---~~~~~ 120 (339)
..|...++..++|...|+...+.+++|||+||++++...|.. +++.|.+.. .+|+|+++|+||||.|+.+ .++++
T Consensus 178 ~~~~~~~~~~l~~~~~gp~~~~~k~~VVLlHG~~~s~~~W~~~~~~~L~~~~~~~yrVia~Dl~G~G~S~~p~~~~ytl~ 257 (481)
T PLN03087 178 TSWLSSSNESLFVHVQQPKDNKAKEDVLFIHGFISSSAFWTETLFPNFSDAAKSTYRLFAVDLLGFGRSPKPADSLYTLR 257 (481)
T ss_pred eeeEeeCCeEEEEEEecCCCCCCCCeEEEECCCCccHHHHHHHHHHHHHHHhhCCCEEEEECCCCCCCCcCCCCCcCCHH
Confidence 456677788999999987654557899999999999999985 457776411 1679999999999999654 38999
Q ss_pred HHHHHHH-HHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHh--hcC
Q 045335 121 STALDVL-KLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFL--SKL 197 (339)
Q Consensus 121 ~~a~dl~-~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 197 (339)
++++++. .+++++++++++|+||||||.+++.+|.++|+ +|.++++++++....+.. ........... ...
T Consensus 258 ~~a~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe---~V~~LVLi~~~~~~~~~~---~~~~~~~~~~~~~~~~ 331 (481)
T PLN03087 258 EHLEMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPG---AVKSLTLLAPPYYPVPKG---VQATQYVMRKVAPRRV 331 (481)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChH---hccEEEEECCCccccccc---hhHHHHHHHHhccccc
Confidence 9999995 89999999999999999999999999999999 778999997653322111 00000010000 000
Q ss_pred CccccChHHHHHHHHH---cC------CchHHHHHHHHhccCCCCCCC-CCCcccee---chHHHHHHHhhhh---hhhh
Q 045335 198 PKEVISKQEVVNALIQ---QG------FSKDVAQWVVTNLKPAASFGA-SSSFSWVF---DLEGIAEMYQSYD---ETNL 261 (339)
Q Consensus 198 ~~~~~~~~~~~~~~~~---~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~~~~~---~~~~ 261 (339)
.... ........+.. .. ......+++...+........ ...+.-.. ............. ...+
T Consensus 332 ~~~~-~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~l~~~i~~~~~~l~~~l 410 (481)
T PLN03087 332 WPPI-AFGASVACWYEHISRTICLVICKNHRLWEFLTRLLTRNRMRTFLIEGFFCHTHNAAWHTLHNIICGSGSKLDGYL 410 (481)
T ss_pred CCcc-ccchhHHHHHHHHHhhhhcccccchHHHHHHHHHhhhhhhhHHHHHHHHhccchhhHHHHHHHHhchhhhhhhHH
Confidence 0000 00001111100 00 000111111111111100000 00000000 0001111111000 0011
Q ss_pred hhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccc-cChhHHHHHHHHhhhc
Q 045335 262 WKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHA-DNPDGLFRILTSSFEG 338 (339)
Q Consensus 262 ~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 338 (339)
......++ +|+|+|+|++| .+++++..+.+++. +|++++++++++||++++ |+|++|++.|.+|++.
T Consensus 411 ~~l~~~I~--vPtLII~Ge~D-------~ivP~~~~~~la~~-iP~a~l~vI~~aGH~~~v~e~p~~fa~~L~~F~~~ 478 (481)
T PLN03087 411 DHVRDQLK--CDVAIFHGGDD-------ELIPVECSYAVKAK-VPRARVKVIDDKDHITIVVGRQKEFARELEEIWRR 478 (481)
T ss_pred HHHHHhCC--CCEEEEEECCC-------CCCCHHHHHHHHHh-CCCCEEEEeCCCCCcchhhcCHHHHHHHHHHHhhc
Confidence 12222455 99999999997 57788888888776 699999999999999996 9999999999999863
No 13
>PLN02578 hydrolase
Probab=100.00 E-value=2.3e-31 Score=233.37 Aligned_cols=263 Identities=17% Similarity=0.184 Sum_probs=170.1
Q ss_pred eeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHH
Q 045335 46 LAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTA 123 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a 123 (339)
..+...+|..++|...|+ +++|||+||++++...|..+++.|++.| +|+++|+||||.|+++ .++.+.++
T Consensus 68 ~~~~~~~~~~i~Y~~~g~-----g~~vvliHG~~~~~~~w~~~~~~l~~~~---~v~~~D~~G~G~S~~~~~~~~~~~~a 139 (354)
T PLN02578 68 YNFWTWRGHKIHYVVQGE-----GLPIVLIHGFGASAFHWRYNIPELAKKY---KVYALDLLGFGWSDKALIEYDAMVWR 139 (354)
T ss_pred ceEEEECCEEEEEEEcCC-----CCeEEEECCCCCCHHHHHHHHHHHhcCC---EEEEECCCCCCCCCCcccccCHHHHH
Confidence 455677899999998764 6889999999999999999999998765 9999999999999654 48999999
Q ss_pred HHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCC-------ChHH-HHHHhh
Q 045335 124 LDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGED-------HPAE-LIHFLS 195 (339)
Q Consensus 124 ~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~-------~~~~-~~~~~~ 195 (339)
+++.++++++..++++++|||+||.+++.+|.++|+ ++.+++++++++........... .... ....+.
T Consensus 140 ~~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~---~v~~lvLv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (354)
T PLN02578 140 DQVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPE---LVAGVALLNSAGQFGSESREKEEAIVVEETVLTRFVVKPLK 216 (354)
T ss_pred HHHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChH---hcceEEEECCCccccccccccccccccccchhhHHHhHHHH
Confidence 999999999998999999999999999999999999 78899999876543321110000 0000 000000
Q ss_pred cCCcccc--------ChHHHHHHHHHcCCc--hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhh----hhhhhh
Q 045335 196 KLPKEVI--------SKQEVVNALIQQGFS--KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQS----YDETNL 261 (339)
Q Consensus 196 ~~~~~~~--------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 261 (339)
....... ......+......+. ....+++.......... ......+...+.. ....+.
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~ 288 (354)
T PLN02578 217 EWFQRVVLGFLFWQAKQPSRIESVLKSVYKDKSNVDDYLVESITEPAAD--------PNAGEVYYRLMSRFLFNQSRYTL 288 (354)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCCcccCCHHHHHHHHhcccC--------CchHHHHHHHHHHHhcCCCCCCH
Confidence 0000000 000000000000000 00001111111000000 0001111111111 112233
Q ss_pred hhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 262 WKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 262 ~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.+.+.+++ +|+++|+|++| .+++....+++.+. +|+++++++ ++||+++.|+|++|++.|.+|++.
T Consensus 289 ~~~l~~i~--~PvLiI~G~~D-------~~v~~~~~~~l~~~-~p~a~l~~i-~~GH~~~~e~p~~~~~~I~~fl~~ 354 (354)
T PLN02578 289 DSLLSKLS--CPLLLLWGDLD-------PWVGPAKAEKIKAF-YPDTTLVNL-QAGHCPHDEVPEQVNKALLEWLSS 354 (354)
T ss_pred HHHhhcCC--CCEEEEEeCCC-------CCCCHHHHHHHHHh-CCCCEEEEe-CCCCCccccCHHHHHHHHHHHHhC
Confidence 45566666 99999999997 45667777777665 699999999 589999999999999999999963
No 14
>PRK06489 hypothetical protein; Provisional
Probab=100.00 E-value=7.4e-32 Score=237.18 Aligned_cols=261 Identities=14% Similarity=0.098 Sum_probs=164.6
Q ss_pred eeeCeeEEEeeccCCCC----CCCCeEEEEcCCCCChhhHH--HHHHHH--------HHhCCCceEEEEeeCCCCCCCCC
Q 045335 50 LIQGTLVRWSSMMDKSI----PDPPTAVLLHGILGSRKNWG--TFARRL--------ARAYPTWQTCDVMVIPHQSRKGG 115 (339)
Q Consensus 50 ~~~g~~l~~~~~g~~~~----~~~~~vv~lHG~~~~~~~~~--~~~~~L--------~~~~~g~~vi~~D~~G~G~S~~~ 115 (339)
..+|..++|..+|+... +.+|+|||+||++++...|. .+.+.| .+ +|+|+++|+||||.|+.+
T Consensus 46 ~~~g~~i~y~~~G~~~~~~~~~~gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~Via~Dl~GhG~S~~p 122 (360)
T PRK06489 46 TLPELRLHYTTLGTPHRNADGEIDNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDAS---KYFIILPDGIGHGKSSKP 122 (360)
T ss_pred CcCCceEEEEecCCCCcccccCCCCeEEEeCCCCCchhhhccchhHHHhcCCCCccccc---CCEEEEeCCCCCCCCCCC
Confidence 47889999999885210 11689999999999988886 555555 33 469999999999999543
Q ss_pred ---------CCCHHHHHHHHHHHH-HHcCCCceE-EEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCC
Q 045335 116 ---------LTTVASTALDVLKLV-AQLRITPRV-LVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGE 184 (339)
Q Consensus 116 ---------~~~~~~~a~dl~~~l-~~l~~~~~~-lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~ 184 (339)
.++++++++++.+++ +++++++++ |+||||||++|+.+|.++|+ +|.++|++++.+....... .
T Consensus 123 ~~~~~~~~~~~~~~~~a~~~~~~l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~---~V~~LVLi~s~~~~~~~~~--~ 197 (360)
T PRK06489 123 SDGLRAAFPRYDYDDMVEAQYRLVTEGLGVKHLRLILGTSMGGMHAWMWGEKYPD---FMDALMPMASQPTEMSGRN--W 197 (360)
T ss_pred CcCCCCCCCcccHHHHHHHHHHHHHHhcCCCceeEEEEECHHHHHHHHHHHhCch---hhheeeeeccCcccccHHH--H
Confidence 379999999988854 889999985 89999999999999999999 7889999887643211100 0
Q ss_pred CChHHHHHHhhcCCc----cccChH-HHHH---HH-----------HHcCCch-HHHHHHHHhccCCCCCCCCCCcccee
Q 045335 185 DHPAELIHFLSKLPK----EVISKQ-EVVN---AL-----------IQQGFSK-DVAQWVVTNLKPAASFGASSSFSWVF 244 (339)
Q Consensus 185 ~~~~~~~~~~~~~~~----~~~~~~-~~~~---~~-----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (339)
.........+..... ...... .... .+ ....... ....++........ ..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~ 267 (360)
T PRK06489 198 MWRRMLIESIRNDPAWNNGNYTTQPPSLKRANPMFAIATSGGTLAYQAQAPTRAAADKLVDERLAAPV----------TA 267 (360)
T ss_pred HHHHHHHHHHHhCCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHhcCChHHHHHHHHHHHHhhh----------hc
Confidence 000000111111110 000000 0000 00 0000000 01111111111100 01
Q ss_pred chHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHH--HHHHHhCCCCeeEEEecCC----Cc
Q 045335 245 DLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAA--EELAVDGGGGVEMHVLEDA----GH 318 (339)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~--~~~~~~~~~~~~~~~i~~~----gH 318 (339)
+...+...+......+....+++++ +|+|+|+|++| .+++++.. +++++. +|+++++++|++ ||
T Consensus 268 ~~~~~~~~~~~~~~~d~~~~L~~I~--~PvLvI~G~~D-------~~~p~~~~~~~~la~~-ip~a~l~~i~~a~~~~GH 337 (360)
T PRK06489 268 DANDFLYQWDSSRDYNPSPDLEKIK--APVLAINSADD-------ERNPPETGVMEAALKR-VKHGRLVLIPASPETRGH 337 (360)
T ss_pred CHHHHHHHHHHhhccChHHHHHhCC--CCEEEEecCCC-------cccChhhHHHHHHHHh-CcCCeEEEECCCCCCCCc
Confidence 1222222222223345567778887 99999999997 35555543 555555 799999999996 99
Q ss_pred cccccChhHHHHHHHHhhhcC
Q 045335 319 WVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 319 ~~~~e~p~~~~~~i~~fl~~l 339 (339)
.++ |+|++|++.|.+||+++
T Consensus 338 ~~~-e~P~~~~~~i~~FL~~~ 357 (360)
T PRK06489 338 GTT-GSAKFWKAYLAEFLAQV 357 (360)
T ss_pred ccc-cCHHHHHHHHHHHHHhc
Confidence 997 89999999999999753
No 15
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=100.00 E-value=2.2e-31 Score=227.34 Aligned_cols=248 Identities=13% Similarity=0.138 Sum_probs=157.2
Q ss_pred CeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHH---HHHHHHhCCCceEEEEeeCCCCCCCCCC---CCHHHHHHHH
Q 045335 53 GTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTF---ARRLARAYPTWQTCDVMVIPHQSRKGGL---TTVASTALDV 126 (339)
Q Consensus 53 g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~---~~~L~~~~~g~~vi~~D~~G~G~S~~~~---~~~~~~a~dl 126 (339)
+..++|...|. +|+|||+||++++...|..+ +..|.+. ||+|+++|+||||.|+... .....+++++
T Consensus 19 ~~~~~y~~~g~-----~~~ivllHG~~~~~~~~~~~~~~~~~l~~~--~~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~l 91 (282)
T TIGR03343 19 NFRIHYNEAGN-----GEAVIMLHGGGPGAGGWSNYYRNIGPFVDA--GYRVILKDSPGFNKSDAVVMDEQRGLVNARAV 91 (282)
T ss_pred ceeEEEEecCC-----CCeEEEECCCCCchhhHHHHHHHHHHHHhC--CCEEEEECCCCCCCCCCCcCcccccchhHHHH
Confidence 55688887663 68899999999988888653 4455554 6799999999999996542 1222578999
Q ss_pred HHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHH
Q 045335 127 LKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQE 206 (339)
Q Consensus 127 ~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (339)
.++++.++.++++++||||||.+++.+|.++|+ ++.++++++++...... .. ................ .....
T Consensus 92 ~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~--~~~~~ 164 (282)
T TIGR03343 92 KGLMDALDIEKAHLVGNSMGGATALNFALEYPD---RIGKLILMGPGGLGPSL-FA-PMPMEGIKLLFKLYAE--PSYET 164 (282)
T ss_pred HHHHHHcCCCCeeEEEECchHHHHHHHHHhChH---hhceEEEECCCCCCccc-cc-cCchHHHHHHHHHhcC--CCHHH
Confidence 999999999999999999999999999999999 77799998765321110 00 0000111111111000 00011
Q ss_pred HHHHHHHcC-----CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHh-----hhhhhhhhhhhhcCCCCceeeE
Q 045335 207 VVNALIQQG-----FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQ-----SYDETNLWKLVENLPQGVHVNF 276 (339)
Q Consensus 207 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~pvl~ 276 (339)
....+.... ......+........ .......... .....+....+++++ +|+++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~--~Pvll 228 (282)
T TIGR03343 165 LKQMLNVFLFDQSLITEELLQGRWENIQR--------------QPEHLKNFLISSQKAPLSTWDVTARLGEIK--AKTLV 228 (282)
T ss_pred HHHHHhhCccCcccCcHHHHHhHHHHhhc--------------CHHHHHHHHHhccccccccchHHHHHhhCC--CCEEE
Confidence 111110000 001111100000000 0011111100 011223344566676 99999
Q ss_pred EeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 277 LKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 277 i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+.|++| .++++...+++.+. .|++++++++++||++++|+|++|++.|.+||+.
T Consensus 229 i~G~~D-------~~v~~~~~~~~~~~-~~~~~~~~i~~agH~~~~e~p~~~~~~i~~fl~~ 282 (282)
T TIGR03343 229 TWGRDD-------RFVPLDHGLKLLWN-MPDAQLHVFSRCGHWAQWEHADAFNRLVIDFLRN 282 (282)
T ss_pred EEccCC-------CcCCchhHHHHHHh-CCCCEEEEeCCCCcCCcccCHHHHHHHHHHHhhC
Confidence 999998 56677777777776 6999999999999999999999999999999963
No 16
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=100.00 E-value=2.8e-31 Score=226.19 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=169.7
Q ss_pred ceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHH
Q 045335 45 VLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVAS 121 (339)
Q Consensus 45 ~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~ 121 (339)
...|..++|..++|...|+. ++|+|||+||++++...|..+++.|++.| +|+++|+||||.|..+ .+++++
T Consensus 7 ~~~~~~~~~~~~~~~~~g~~---~~~~vv~~hG~~~~~~~~~~~~~~l~~~~---~vi~~D~~G~G~S~~~~~~~~~~~~ 80 (278)
T TIGR03056 7 CSRRVTVGPFHWHVQDMGPT---AGPLLLLLHGTGASTHSWRDLMPPLARSF---RVVAPDLPGHGFTRAPFRFRFTLPS 80 (278)
T ss_pred ccceeeECCEEEEEEecCCC---CCCeEEEEcCCCCCHHHHHHHHHHHhhCc---EEEeecCCCCCCCCCccccCCCHHH
Confidence 44577889999999988752 46899999999999999999999998765 9999999999999543 479999
Q ss_pred HHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccc
Q 045335 122 TALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEV 201 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (339)
+++|+.++++++++++++|+||||||.+++.+|.++|+ ++.+++++++........... ........+...+.
T Consensus 81 ~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~---~v~~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-- 153 (278)
T TIGR03056 81 MAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPV---TPRMVVGINAALMPFEGMAGT--LFPYMARVLACNPF-- 153 (278)
T ss_pred HHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCc---ccceEEEEcCccccccccccc--ccchhhHhhhhccc--
Confidence 99999999999999999999999999999999999998 777888887754321110000 00000011000000
Q ss_pred cChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCc----cceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEE
Q 045335 202 ISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSF----SWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFL 277 (339)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i 277 (339)
......... ............. ...........+ ........................+++++ +|++++
T Consensus 154 --~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~lii 226 (278)
T TIGR03056 154 --TPPMMSRGA--ADQQRVERLIRDT-GSLLDKAGMTYYGRLIRSPAHVDGALSMMAQWDLAPLNRDLPRIT--IPLHLI 226 (278)
T ss_pred --chHHHHhhc--ccCcchhHHhhcc-ccccccchhhHHHHhhcCchhhhHHHHHhhcccccchhhhcccCC--CCEEEE
Confidence 000000000 0000000000000 000000000000 00000011111111111111223455555 999999
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 278 KAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 278 ~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
.|++| ..++....+++.+. +++++++.++++||++++|+|+++++.|.+|++
T Consensus 227 ~g~~D-------~~vp~~~~~~~~~~-~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~f~~ 278 (278)
T TIGR03056 227 AGEED-------KAVPPDESKRAATR-VPTATLHVVPGGGHLVHEEQADGVVGLILQAAE 278 (278)
T ss_pred EeCCC-------cccCHHHHHHHHHh-ccCCeEEEECCCCCcccccCHHHHHHHHHHHhC
Confidence 99997 56777777777765 699999999999999999999999999999985
No 17
>KOG4409 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=100.00 E-value=6.2e-31 Score=216.02 Aligned_cols=267 Identities=15% Similarity=0.183 Sum_probs=174.4
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCC------CHH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLT------TVA 120 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~------~~~ 120 (339)
.|+.+.+..-.|.......+.+++++|||||+|++...|-..++.|++.. +|+++|++|+|+|+++.+ ...
T Consensus 68 ~~v~i~~~~~iw~~~~~~~~~~~~plVliHGyGAg~g~f~~Nf~~La~~~---~vyaiDllG~G~SSRP~F~~d~~~~e~ 144 (365)
T KOG4409|consen 68 KYVRIPNGIEIWTITVSNESANKTPLVLIHGYGAGLGLFFRNFDDLAKIR---NVYAIDLLGFGRSSRPKFSIDPTTAEK 144 (365)
T ss_pred eeeecCCCceeEEEeecccccCCCcEEEEeccchhHHHHHHhhhhhhhcC---ceEEecccCCCCCCCCCCCCCcccchH
Confidence 34444455566666666666789999999999999999999999999975 999999999999988764 345
Q ss_pred HHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcC--CCCCCCChHHHHHHhhcCC
Q 045335 121 STALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRA--GGDGEDHPAELIHFLSKLP 198 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 198 (339)
.+++-++++....++++.+|+||||||.+|..||.+||+ +|.+||++++....... .......+..+...+....
T Consensus 145 ~fvesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPe---rV~kLiLvsP~Gf~~~~~~~~~~~~~~~~w~~~~~~~~ 221 (365)
T KOG4409|consen 145 EFVESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPE---RVEKLILVSPWGFPEKPDSEPEFTKPPPEWYKALFLVA 221 (365)
T ss_pred HHHHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChH---hhceEEEecccccccCCCcchhhcCCChHHHhhhhhhh
Confidence 789999999999999999999999999999999999999 88899999887544322 1111112222221111110
Q ss_pred ccccChHHHHH-----------HHH----HcC---CchHH-HHHHHHhccCCCCCCCCCCccceechHHHHHHHhhh--h
Q 045335 199 KEVISKQEVVN-----------ALI----QQG---FSKDV-AQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSY--D 257 (339)
Q Consensus 199 ~~~~~~~~~~~-----------~~~----~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 257 (339)
.......+++ .+. ... ...+. .+++........ .....+..++... .
T Consensus 222 -~~~nPl~~LR~~Gp~Gp~Lv~~~~~d~~~k~~~~~~ed~l~~YiY~~n~~~p-----------sgE~~fk~l~~~~g~A 289 (365)
T KOG4409|consen 222 -TNFNPLALLRLMGPLGPKLVSRLRPDRFRKFPSLIEEDFLHEYIYHCNAQNP-----------SGETAFKNLFEPGGWA 289 (365)
T ss_pred -hcCCHHHHHHhccccchHHHhhhhHHHHHhccccchhHHHHHHHHHhcCCCC-----------cHHHHHHHHHhccchh
Confidence 0111111111 111 111 11111 222222211111 0112222232222 3
Q ss_pred hhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 258 ETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 258 ~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
+..+.+.+..+...+|+++|.|++|.+-+ ....+...++. ...++.+++|++||.+.+++|+.|++.|.++++
T Consensus 290 r~Pm~~r~~~l~~~~pv~fiyG~~dWmD~----~~g~~~~~~~~---~~~~~~~~v~~aGHhvylDnp~~Fn~~v~~~~~ 362 (365)
T KOG4409|consen 290 RRPMIQRLRELKKDVPVTFIYGDRDWMDK----NAGLEVTKSLM---KEYVEIIIVPGAGHHVYLDNPEFFNQIVLEECD 362 (365)
T ss_pred hhhHHHHHHhhccCCCEEEEecCcccccc----hhHHHHHHHhh---cccceEEEecCCCceeecCCHHHHHHHHHHHHh
Confidence 44556677777777999999999986521 11122222221 246999999999999999999999999999987
Q ss_pred c
Q 045335 338 G 338 (339)
Q Consensus 338 ~ 338 (339)
+
T Consensus 363 ~ 363 (365)
T KOG4409|consen 363 K 363 (365)
T ss_pred c
Confidence 5
No 18
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=99.98 E-value=3.2e-31 Score=221.17 Aligned_cols=230 Identities=22% Similarity=0.307 Sum_probs=147.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-CCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-LTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
+|+|||+||++++...|..+++.|. . |+|+++|+||||.|..+ ..+++++++|+.++++++++++++++||||||
T Consensus 2 ~p~vvllHG~~~~~~~w~~~~~~l~-~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg 77 (242)
T PRK11126 2 LPWLVFLHGLLGSGQDWQPVGEALP-D---YPRLYIDLPGHGGSAAISVDGFADVSRLLSQTLQSYNILPYWLVGYSLGG 77 (242)
T ss_pred CCEEEEECCCCCChHHHHHHHHHcC-C---CCEEEecCCCCCCCCCccccCHHHHHHHHHHHHHHcCCCCeEEEEECHHH
Confidence 6889999999999999999999883 3 49999999999999654 36999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHH---HHHhhcCCccccChHHHHHHHHHc----CCchHH
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAEL---IHFLSKLPKEVISKQEVVNALIQQ----GFSKDV 220 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 220 (339)
.+|+.+|.++|+. +|.+++++++.+....... ....+ ..+....... ........+... ......
T Consensus 78 ~va~~~a~~~~~~--~v~~lvl~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 149 (242)
T PRK11126 78 RIAMYYACQGLAG--GLCGLIVEGGNPGLQNAEE----RQARWQNDRQWAQRFRQE--PLEQVLADWYQQPVFASLNAEQ 149 (242)
T ss_pred HHHHHHHHhCCcc--cccEEEEeCCCCCCCCHHH----HHHHHhhhHHHHHHhccC--cHHHHHHHHHhcchhhccCccH
Confidence 9999999999762 3778888765543221100 00000 0000000000 001111111000 000000
Q ss_pred HHHHHHhccCCCCCCCCCCccceechHHHHHHHhhh---hhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHH
Q 045335 221 AQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSY---DETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAA 297 (339)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~ 297 (339)
......... ..........+... ...+.++.+.+++ +|+++++|++|. .+.
T Consensus 150 ~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~--~P~lii~G~~D~-------~~~---- 203 (242)
T PRK11126 150 RQQLVAKRS-------------NNNGAAVAAMLEATSLAKQPDLRPALQALT--FPFYYLCGERDS-------KFQ---- 203 (242)
T ss_pred HHHHHHhcc-------------cCCHHHHHHHHHhcCcccCCcHHHHhhccC--CCeEEEEeCCcc-------hHH----
Confidence 000000000 00011122222111 2234456677777 999999999983 221
Q ss_pred HHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhcC
Q 045335 298 EELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 298 ~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
+.++. +++++++++++||++++|+|++|++.|.+|++++
T Consensus 204 -~~~~~--~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~~ 242 (242)
T PRK11126 204 -ALAQQ--LALPLHVIPNAGHNAHRENPAAFAASLAQILRLI 242 (242)
T ss_pred -HHHHH--hcCeEEEeCCCCCchhhhChHHHHHHHHHHHhhC
Confidence 22332 3799999999999999999999999999999875
No 19
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=99.98 E-value=8.5e-31 Score=220.31 Aligned_cols=254 Identities=17% Similarity=0.195 Sum_probs=163.7
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC---CCCCHHHHHHHHHHHHHH
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG---GLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~---~~~~~~~~a~dl~~~l~~ 132 (339)
++|..+|+. ..++|+|||+||++++...|..+++.|.+. |+|+++|+||||.|.. ..++++++++++.++++.
T Consensus 1 ~~~~~~~~~-~~~~~~iv~lhG~~~~~~~~~~~~~~l~~~---~~vi~~D~~G~G~S~~~~~~~~~~~~~~~~~~~~i~~ 76 (257)
T TIGR03611 1 MHYELHGPP-DADAPVVVLSSGLGGSGSYWAPQLDVLTQR---FHVVTYDHRGTGRSPGELPPGYSIAHMADDVLQLLDA 76 (257)
T ss_pred CEEEEecCC-CCCCCEEEEEcCCCcchhHHHHHHHHHHhc---cEEEEEcCCCCCCCCCCCcccCCHHHHHHHHHHHHHH
Confidence 467777752 245789999999999999999999988875 5999999999999954 348999999999999999
Q ss_pred cCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHH
Q 045335 133 LRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALI 212 (339)
Q Consensus 133 l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (339)
++.++++++||||||++++.+|.++|+ ++.+++++++........ ..........+..... ........
T Consensus 77 ~~~~~~~l~G~S~Gg~~a~~~a~~~~~---~v~~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-----~~~~~~~~ 145 (257)
T TIGR03611 77 LNIERFHFVGHALGGLIGLQLALRYPE---RLLSLVLINAWSRPDPHT---RRCFDVRIALLQHAGP-----EAYVHAQA 145 (257)
T ss_pred hCCCcEEEEEechhHHHHHHHHHHChH---HhHHheeecCCCCCChhH---HHHHHHHHHHHhccCc-----chhhhhhh
Confidence 999999999999999999999999998 777888887643221100 0000000111111100 00000000
Q ss_pred HcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHH
Q 045335 213 QQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQ 292 (339)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~ 292 (339)
...... .++........... .......................+....+..++ +|+++++|++| ..+
T Consensus 146 ~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~P~l~i~g~~D-------~~~ 212 (257)
T TIGR03611 146 LFLYPA---DWISENAARLAADE-AHALAHFPGKANVLRRINALEAFDVSARLDRIQ--HPVLLIANRDD-------MLV 212 (257)
T ss_pred hhhccc---cHhhccchhhhhhh-hhcccccCccHHHHHHHHHHHcCCcHHHhcccC--ccEEEEecCcC-------ccc
Confidence 000000 00000000000000 000000001111222222223334445566665 99999999997 466
Q ss_pred HHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 293 RIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+++..+++.+. .++++++.++++||++++++|+++++.|.+||+.
T Consensus 213 ~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~~~~~~~~~~i~~fl~~ 257 (257)
T TIGR03611 213 PYTQSLRLAAA-LPNAQLKLLPYGGHASNVTDPETFNRALLDFLKT 257 (257)
T ss_pred CHHHHHHHHHh-cCCceEEEECCCCCCccccCHHHHHHHHHHHhcC
Confidence 77777777776 6899999999999999999999999999999963
No 20
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=99.98 E-value=1.4e-31 Score=234.10 Aligned_cols=266 Identities=15% Similarity=0.124 Sum_probs=166.0
Q ss_pred CcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh------------hHHHHHH---HH-HHhCCCceEEEEee
Q 045335 43 SGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK------------NWGTFAR---RL-ARAYPTWQTCDVMV 106 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~------------~~~~~~~---~L-~~~~~g~~vi~~D~ 106 (339)
+..+.+...+|..++|+..|+ .++++||+||++++.. .|..+++ .| .+. |+||++|+
T Consensus 35 ~~~~~~~~~~~~~l~y~~~G~----~~~p~vll~g~~~~~~~~~~~~~~~~~~~w~~~v~~~~~L~~~~---~~Vi~~Dl 107 (343)
T PRK08775 35 PLSMRHAGLEDLRLRYELIGP----AGAPVVFVAGGISAHRHVAATATFPEKGWWEGLVGSGRALDPAR---FRLLAFDF 107 (343)
T ss_pred ceeecCCCCCCceEEEEEecc----CCCCEEEEecCCCcccccccccCCCCCCcchhccCCCCccCccc---cEEEEEeC
Confidence 566777777999999999885 2445777777776655 6888886 56 354 49999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCce-EEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCC
Q 045335 107 IPHQSRKGGLTTVASTALDVLKLVAQLRITPR-VLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGED 185 (339)
Q Consensus 107 ~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~-~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~ 185 (339)
||||.|....++++++++|+.+++++++++++ +||||||||++|+.+|.++|+ +|.++|++++.+...... .
T Consensus 108 ~G~g~s~~~~~~~~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~---~V~~LvLi~s~~~~~~~~----~ 180 (343)
T PRK08775 108 IGADGSLDVPIDTADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPA---RVRTLVVVSGAHRAHPYA----A 180 (343)
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChH---hhheEEEECccccCCHHH----H
Confidence 99999876678999999999999999999775 799999999999999999999 788999998764321100 0
Q ss_pred ChHHHHHHhhcCCccc--c-ChHHHHHHH--HHcCCchHHHHHHHHhccCCCCC-CCCCCc-------------cceech
Q 045335 186 HPAELIHFLSKLPKEV--I-SKQEVVNAL--IQQGFSKDVAQWVVTNLKPAASF-GASSSF-------------SWVFDL 246 (339)
Q Consensus 186 ~~~~~~~~~~~~~~~~--~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~ 246 (339)
................ . ........+ ........... .+...... ...... ....+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 256 (343)
T PRK08775 181 AWRALQRRAVALGQLQCAEKHGLALARQLAMLSYRTPEEFEE----RFDAPPEVINGRVRVAAEDYLDAAGAQYVARTPV 256 (343)
T ss_pred HHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHcCCHHHHHH----HhCCCccccCCCccchHHHHHHHHHHHHHHhcCh
Confidence 0000001110000000 0 000001100 00000000111 11100000 000000 000001
Q ss_pred HHHHHHHhhhhhhhh-hhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC-CCccccccC
Q 045335 247 EGIAEMYQSYDETNL-WKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED-AGHWVHADN 324 (339)
Q Consensus 247 ~~~~~~~~~~~~~~~-~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~e~ 324 (339)
..+....... +. ...+.+++ +|+|++.|+.| .++++...+++.+.+.|+++++++++ +||.+++|+
T Consensus 257 ~~~~~~~~~~---~~~~~~l~~I~--~PtLvi~G~~D-------~~~p~~~~~~~~~~i~p~a~l~~i~~~aGH~~~lE~ 324 (343)
T PRK08775 257 NAYLRLSESI---DLHRVDPEAIR--VPTVVVAVEGD-------RLVPLADLVELAEGLGPRGSLRVLRSPYGHDAFLKE 324 (343)
T ss_pred hHHHHHHHHH---hhcCCChhcCC--CCeEEEEeCCC-------EeeCHHHHHHHHHHcCCCCeEEEEeCCccHHHHhcC
Confidence 1111111110 11 11244555 89999999987 46677778888887558999999985 999999999
Q ss_pred hhHHHHHHHHhhhc
Q 045335 325 PDGLFRILTSSFEG 338 (339)
Q Consensus 325 p~~~~~~i~~fl~~ 338 (339)
|++|++.|.+||++
T Consensus 325 Pe~~~~~l~~FL~~ 338 (343)
T PRK08775 325 TDRIDAILTTALRS 338 (343)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999975
No 21
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=99.98 E-value=2e-30 Score=226.63 Aligned_cols=258 Identities=14% Similarity=0.131 Sum_probs=162.8
Q ss_pred eeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC------CCCHHHHH
Q 045335 50 LIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG------LTTVASTA 123 (339)
Q Consensus 50 ~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~------~~~~~~~a 123 (339)
..+|.+++|...|+ +++++||||||++++...|+.+++.|++.| +|+++|+||||.|+.+ .+++++++
T Consensus 111 ~~~~~~~~y~~~G~---~~~~~ivllHG~~~~~~~w~~~~~~L~~~~---~Via~DlpG~G~S~~p~~~~~~~ys~~~~a 184 (383)
T PLN03084 111 SSDLFRWFCVESGS---NNNPPVLLIHGFPSQAYSYRKVLPVLSKNY---HAIAFDWLGFGFSDKPQPGYGFNYTLDEYV 184 (383)
T ss_pred cCCceEEEEEecCC---CCCCeEEEECCCCCCHHHHHHHHHHHhcCC---EEEEECCCCCCCCCCCcccccccCCHHHHH
Confidence 46788899988875 247899999999999999999999998754 9999999999999654 47999999
Q ss_pred HHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccC
Q 045335 124 LDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVIS 203 (339)
Q Consensus 124 ~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (339)
+++.++++++++++++|+|||+||++++.+|.++|+ +|.++|+++++...... ..+.....+..........
T Consensus 185 ~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~---~v~~lILi~~~~~~~~~-----~~p~~l~~~~~~l~~~~~~ 256 (383)
T PLN03084 185 SSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPD---KIKKLILLNPPLTKEHA-----KLPSTLSEFSNFLLGEIFS 256 (383)
T ss_pred HHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChH---hhcEEEEECCCCccccc-----cchHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999 78899999875321100 0011111110000000000
Q ss_pred --hHHHHHHHHHcC----CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhh-hhh--hhhhhhhhcCCCCcee
Q 045335 204 --KQEVVNALIQQG----FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQS-YDE--TNLWKLVENLPQGVHV 274 (339)
Q Consensus 204 --~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~pv 274 (339)
............ ...+....+...+.... .. ......+...+.. ... .+....+......+|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~------~~--~~~l~~~~r~~~~~l~~~~~~l~~~l~~~~i~vPv 328 (383)
T PLN03084 257 QDPLRASDKALTSCGPYAMKEDDAMVYRRPYLTSG------SS--GFALNAISRSMKKELKKYIEEMRSILTDKNWKTPI 328 (383)
T ss_pred cchHHHHhhhhcccCccCCCHHHHHHHhccccCCc------ch--HHHHHHHHHHhhcccchhhHHHHhhhccccCCCCE
Confidence 000000000000 00000000000000000 00 0000111111110 000 0011111111234899
Q ss_pred eEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 275 NFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 275 l~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
++|+|+.| .+++.+..+++++. ++++++++++|||++++|+|+++++.|.+||.+
T Consensus 329 LiI~G~~D-------~~v~~~~~~~~a~~--~~a~l~vIp~aGH~~~~E~Pe~v~~~I~~Fl~~ 383 (383)
T PLN03084 329 TVCWGLRD-------RWLNYDGVEDFCKS--SQHKLIELPMAGHHVQEDCGEELGGIISGILSK 383 (383)
T ss_pred EEEeeCCC-------CCcCHHHHHHHHHh--cCCeEEEECCCCCCcchhCHHHHHHHHHHHhhC
Confidence 99999987 45666667777765 489999999999999999999999999999863
No 22
>PRK07581 hypothetical protein; Validated
Probab=99.97 E-value=9.7e-31 Score=228.77 Aligned_cols=264 Identities=11% Similarity=0.056 Sum_probs=158.9
Q ss_pred EeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHH---HHHHHhCCCceEEEEeeCCCCCCCCC-----CCCHH
Q 045335 49 DLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFA---RRLARAYPTWQTCDVMVIPHQSRKGG-----LTTVA 120 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~---~~L~~~~~g~~vi~~D~~G~G~S~~~-----~~~~~ 120 (339)
.+++|.+++|...|+......|+||++||++++...|..++ +.|... +|+||++|+||||.|..+ .++++
T Consensus 21 ~~~~~~~l~y~~~G~~~~~~~~~vll~~~~~~~~~~~~~~~~~~~~l~~~--~~~vi~~D~~G~G~S~~~~~~~~~~~~~ 98 (339)
T PRK07581 21 ATLPDARLAYKTYGTLNAAKDNAILYPTWYSGTHQDNEWLIGPGRALDPE--KYFIIIPNMFGNGLSSSPSNTPAPFNAA 98 (339)
T ss_pred CCcCCceEEEEecCccCCCCCCEEEEeCCCCCCcccchhhccCCCccCcC--ceEEEEecCCCCCCCCCCCCCCCCCCCC
Confidence 35578889999998633234466777777777777776544 356533 469999999999999543 34544
Q ss_pred H-----HHHHHHH----HHHHcCCCc-eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHH
Q 045335 121 S-----TALDVLK----LVAQLRITP-RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAEL 190 (339)
Q Consensus 121 ~-----~a~dl~~----~l~~l~~~~-~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~ 190 (339)
+ +++|+.. +++++++++ ++||||||||++|+++|.+||+ +|.++|++++.+....... ......
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~---~V~~Lvli~~~~~~~~~~~---~~~~~~ 172 (339)
T PRK07581 99 RFPHVTIYDNVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPD---MVERAAPIAGTAKTTPHNF---VFLEGL 172 (339)
T ss_pred CCCceeHHHHHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHH---HHhhheeeecCCCCCHHHH---HHHHHH
Confidence 3 5666655 778899999 5899999999999999999999 7889999987653211000 000000
Q ss_pred HHHhhcCCc---cccC--hHHHH----HHHHHcCCchH--------------HHHHHHHhccCCCCCCCCCCccceechH
Q 045335 191 IHFLSKLPK---EVIS--KQEVV----NALIQQGFSKD--------------VAQWVVTNLKPAASFGASSSFSWVFDLE 247 (339)
Q Consensus 191 ~~~~~~~~~---~~~~--~~~~~----~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (339)
...+...+. .... ..... ..+....+... ..+++......... ..+..
T Consensus 173 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~ 243 (339)
T PRK07581 173 KAALTADPAFNGGWYAEPPERGLRAHARVYAGWGFSQAFYRQELWRAMGYASLEDFLVGFWEGNFL---------PRDPN 243 (339)
T ss_pred HHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHHHHhHHHHHHhhhccccChhhHHHHHHHHHHHhhc---------ccCcc
Confidence 000100000 0000 00000 00000000000 00111111100000 00111
Q ss_pred HHHHHHhhhh----------hhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC-C
Q 045335 248 GIAEMYQSYD----------ETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED-A 316 (339)
Q Consensus 248 ~~~~~~~~~~----------~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~ 316 (339)
.....+.... ..+.+..+.+++ +|+|+|+|++| ..+++...+.+++. +|+++++++++ +
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~d~~~~L~~I~--~PtLvI~G~~D-------~~~p~~~~~~l~~~-ip~a~l~~i~~~~ 313 (339)
T PRK07581 244 NLLAMLWTWQRGDISRNPAYGGDLAAALGSIT--AKTFVMPISTD-------LYFPPEDCEAEAAL-IPNAELRPIESIW 313 (339)
T ss_pred cHHHHHHHhhhcccccCcccCCCHHHHHhcCC--CCEEEEEeCCC-------CCCCHHHHHHHHHh-CCCCeEEEeCCCC
Confidence 1222111110 124556677777 99999999997 46677777777665 69999999999 9
Q ss_pred CccccccChhHHHHHHHHhhhcC
Q 045335 317 GHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 317 gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
||++++|+|++++..|.+||+++
T Consensus 314 GH~~~~~~~~~~~~~~~~~~~~~ 336 (339)
T PRK07581 314 GHLAGFGQNPADIAFIDAALKEL 336 (339)
T ss_pred CccccccCcHHHHHHHHHHHHHH
Confidence 99999999999999999999863
No 23
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=99.97 E-value=2.1e-30 Score=227.27 Aligned_cols=263 Identities=14% Similarity=0.148 Sum_probs=168.1
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh-hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-C--CCHHHH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK-NWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-L--TTVAST 122 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~-~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~--~~~~~~ 122 (339)
.....+|..++|..+++.+...+++|||+||++++.. .|..+++.|++. ||+|+++|+||||.|+.. . .+++++
T Consensus 65 ~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~~~ 142 (349)
T PLN02385 65 YEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFEGIARKIASS--GYGVFAMDYPGFGLSEGLHGYIPSFDDL 142 (349)
T ss_pred eEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHHHHHHHHHhC--CCEEEEecCCCCCCCCCCCCCcCCHHHH
Confidence 3445689999999988754445789999999998865 468899999886 789999999999999653 2 489999
Q ss_pred HHHHHHHHHHcCCC------ceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhc
Q 045335 123 ALDVLKLVAQLRIT------PRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSK 196 (339)
Q Consensus 123 a~dl~~~l~~l~~~------~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (339)
++|+.++++.+... +++|+||||||++++.+|.++|+ ++.++|++++........ ............+..
T Consensus 143 ~~dv~~~l~~l~~~~~~~~~~~~LvGhSmGG~val~~a~~~p~---~v~glVLi~p~~~~~~~~-~~~~~~~~~~~~~~~ 218 (349)
T PLN02385 143 VDDVIEHYSKIKGNPEFRGLPSFLFGQSMGGAVALKVHLKQPN---AWDGAILVAPMCKIADDV-VPPPLVLQILILLAN 218 (349)
T ss_pred HHHHHHHHHHHHhccccCCCCEEEEEeccchHHHHHHHHhCcc---hhhheeEecccccccccc-cCchHHHHHHHHHHH
Confidence 99999999887543 79999999999999999999999 777999998654322111 000001111111111
Q ss_pred C-Ccc-ccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCcee
Q 045335 197 L-PKE-VISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHV 274 (339)
Q Consensus 197 ~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 274 (339)
. +.. ..........+ +............. ... .. ..........+... .+....+.+++ +|+
T Consensus 219 ~~p~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~---~~----~~~~~~~~~~l~~~--~~~~~~l~~i~--~P~ 282 (349)
T PLN02385 219 LLPKAKLVPQKDLAELA----FRDLKKRKMAEYNV-IAY---KD----KPRLRTAVELLRTT--QEIEMQLEEVS--LPL 282 (349)
T ss_pred HCCCceecCCCcccccc----ccCHHHHHHhhcCc-cee---CC----CcchHHHHHHHHHH--HHHHHhcccCC--CCE
Confidence 1 100 00000000000 00000000000000 000 00 00111122222211 12334555666 999
Q ss_pred eEEeccchhhhhhhhhHHHHHHHHHHHHhC-CCCeeEEEecCCCccccccChhH----HHHHHHHhhhc
Q 045335 275 NFLKAERSLHRWALEDIQRIHAAEELAVDG-GGGVEMHVLEDAGHWVHADNPDG----LFRILTSSFEG 338 (339)
Q Consensus 275 l~i~g~~d~~~~g~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~----~~~~i~~fl~~ 338 (339)
|+|+|++| .++++...+++.+.. .++.+++++|++||.++.|+|++ +++.|.+||++
T Consensus 283 Lii~G~~D-------~vv~~~~~~~l~~~~~~~~~~l~~i~~~gH~l~~e~p~~~~~~v~~~i~~wL~~ 344 (349)
T PLN02385 283 LILHGEAD-------KVTDPSVSKFLYEKASSSDKKLKLYEDAYHSILEGEPDEMIFQVLDDIISWLDS 344 (349)
T ss_pred EEEEeCCC-------CccChHHHHHHHHHcCCCCceEEEeCCCeeecccCCChhhHHHHHHHHHHHHHH
Confidence 99999997 567777778877764 26789999999999999999987 88889999874
No 24
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=99.97 E-value=7.2e-30 Score=212.88 Aligned_cols=235 Identities=16% Similarity=0.182 Sum_probs=152.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC-CCCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG-GLTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~-~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
.|+|||+||++++...|..+++.|.+. |+|+++|+||||.|.. ..++++++++++.+.++ ++++++||||||
T Consensus 4 ~~~iv~~HG~~~~~~~~~~~~~~l~~~---~~vi~~d~~G~G~s~~~~~~~~~~~~~~~~~~~~----~~~~lvG~S~Gg 76 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRCLDEELSAH---FTLHLVDLPGHGRSRGFGPLSLADAAEAIAAQAP----DPAIWLGWSLGG 76 (245)
T ss_pred CceEEEEcCCCCchhhHHHHHHhhccC---eEEEEecCCcCccCCCCCCcCHHHHHHHHHHhCC----CCeEEEEEcHHH
Confidence 489999999999999999999999875 4999999999999854 34788888888876543 689999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCC-ChHHHHHHhhcCCccccChHHHHHHHH-----HcCCchHHH
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGED-HPAELIHFLSKLPKEVISKQEVVNALI-----QQGFSKDVA 221 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 221 (339)
.+++.+|.++|+ ++.+++++++.+........... .......+........ ......+. .........
T Consensus 77 ~~a~~~a~~~p~---~v~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 150 (245)
T TIGR01738 77 LVALHIAATHPD---RVRALVTVASSPCFSAREDWPEGIKPDVLTGFQQQLSDDY---QRTIERFLALQTLGTPTARQDA 150 (245)
T ss_pred HHHHHHHHHCHH---hhheeeEecCCcccccCCcccccCCHHHHHHHHHHhhhhH---HHHHHHHHHHHHhcCCccchHH
Confidence 999999999999 77799999877643321111000 1111111111110000 00011110 000000000
Q ss_pred HHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHH
Q 045335 222 QWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELA 301 (339)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~ 301 (339)
..+...+.... ..+...+...+..+...+....+.+++ +|+++++|++| .+++.+..+.+.
T Consensus 151 ~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~l~~i~--~Pvlii~g~~D-------~~~~~~~~~~~~ 211 (245)
T TIGR01738 151 RALKQTLLARP----------TPNVQVLQAGLEILATVDLRQPLQNIS--VPFLRLYGYLD-------GLVPAKVVPYLD 211 (245)
T ss_pred HHHHHHhhccC----------CCCHHHHHHHHHHhhcccHHHHHhcCC--CCEEEEeecCC-------cccCHHHHHHHH
Confidence 11111111100 001122223333333344455666776 99999999997 466777666666
Q ss_pred HhCCCCeeEEEecCCCccccccChhHHHHHHHHhh
Q 045335 302 VDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSF 336 (339)
Q Consensus 302 ~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 336 (339)
+. .|++++++++++||++++|+|++|++.|.+|+
T Consensus 212 ~~-~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fi 245 (245)
T TIGR01738 212 KL-APHSELYIFAKAAHAPFLSHAEAFCALLVAFK 245 (245)
T ss_pred Hh-CCCCeEEEeCCCCCCccccCHHHHHHHHHhhC
Confidence 65 69999999999999999999999999999996
No 25
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=99.97 E-value=2.2e-30 Score=227.16 Aligned_cols=271 Identities=13% Similarity=0.104 Sum_probs=166.1
Q ss_pred EeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh-----------hHHHHHH---HHHHhCCCceEEEEeeCC--CCCC
Q 045335 49 DLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK-----------NWGTFAR---RLARAYPTWQTCDVMVIP--HQSR 112 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~-----------~~~~~~~---~L~~~~~g~~vi~~D~~G--~G~S 112 (339)
..++|.+++|..+|+.+...+++|||+||++++.. .|..++. .|... +|+|+++|+|| ||.|
T Consensus 11 ~~~~~~~~~y~~~g~~~~~~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~--~~~vi~~D~~G~~~g~s 88 (351)
T TIGR01392 11 GVLSDVRVAYETYGTLNAERSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLIGPGRAIDTD--RYFVVCSNVLGGCYGST 88 (351)
T ss_pred CccCCceEEEEeccccCCCCCCEEEEcCCcCcchhhcccCCCCCCCchhhccCCCCCcCCC--ceEEEEecCCCCCCCCC
Confidence 45688999999998643335689999999999763 4777762 44333 56999999999 5665
Q ss_pred CC--------------CCCCHHHHHHHHHHHHHHcCCCc-eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCC
Q 045335 113 KG--------------GLTTVASTALDVLKLVAQLRITP-RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKV 177 (339)
Q Consensus 113 ~~--------------~~~~~~~~a~dl~~~l~~l~~~~-~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~ 177 (339)
.+ +.++++++++++.++++++++++ ++|+||||||++++.+|.++|+ +|.++|++++.+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~ 165 (351)
T TIGR01392 89 GPSSINPGGRPYGSDFPLITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPE---RVRAIVVLATSARHS 165 (351)
T ss_pred CCCCCCCCCCcCCCCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChH---hhheEEEEccCCcCC
Confidence 32 14789999999999999999999 9999999999999999999999 788999998865432
Q ss_pred cCCCCCCCChHHHHHHhhcCCc---c-ccC------hHHHHHHHHH--cCCchHHHHHHHHhccCCCCCC-------C--
Q 045335 178 RAGGDGEDHPAELIHFLSKLPK---E-VIS------KQEVVNALIQ--QGFSKDVAQWVVTNLKPAASFG-------A-- 236 (339)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~---~-~~~------~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-------~-- 236 (339)
..... ........+..... . +.. .......+.. ......+...+........... .
T Consensus 166 ~~~~~---~~~~~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~ 242 (351)
T TIGR01392 166 AWCIA---FNEVQRQAILADPNWNDGDYYEDGQPDRGLALARMLAHLTYRSEESMAERFGRAPQSGESPASGFDTRFQVE 242 (351)
T ss_pred HHHHH---HHHHHHHHHHhCCCCCCCCCCCCCChhhHHHHHHHHHHHhcCCHHHHHHHhCcCcccccccccccCccchHH
Confidence 11000 00000111110000 0 000 0000011100 0011111111110000000000 0
Q ss_pred ------CCCccceechHHHHHHHhhhhh-------hhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHh
Q 045335 237 ------SSSFSWVFDLEGIAEMYQSYDE-------TNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVD 303 (339)
Q Consensus 237 ------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~ 303 (339)
...+.+..+..........+.. .+.++.+..++ +|+|+|.|++| .++++...+++++.
T Consensus 243 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~d~~~~~~~~~~~l~~I~--~P~Lvi~G~~D-------~~~p~~~~~~~a~~ 313 (351)
T TIGR01392 243 SYLRYQGDKFVDRFDANSYLYLTRALDTHDLGRGRGSLTEALSRIK--APFLVVSITSD-------WLFPPAESRELAKA 313 (351)
T ss_pred HHHHHHHHHHHhhcCcchHHHHHHHHHhcCCcCCCCCHHHHHhhCC--CCEEEEEeCCc-------cccCHHHHHHHHHH
Confidence 0000111112222122222221 23456777777 99999999987 46777778888776
Q ss_pred CCCCeeEE-----EecCCCccccccChhHHHHHHHHhhh
Q 045335 304 GGGGVEMH-----VLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 304 ~~~~~~~~-----~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
+|+++++ +++++||.+++|+|++|++.|.+||+
T Consensus 314 -i~~~~~~v~~~~i~~~~GH~~~le~p~~~~~~l~~FL~ 351 (351)
T TIGR01392 314 -LPAAGLRVTYVEIESPYGHDAFLVETDQVEELIRGFLR 351 (351)
T ss_pred -HhhcCCceEEEEeCCCCCcchhhcCHHHHHHHHHHHhC
Confidence 6888766 56799999999999999999999985
No 26
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.97 E-value=1.5e-29 Score=211.67 Aligned_cols=243 Identities=14% Similarity=0.173 Sum_probs=160.1
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHHHHHHHHHHHc
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTALDVLKLVAQL 133 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a~dl~~~l~~l 133 (339)
++|...|+. +++|+|||+||++.+...|..+++.|.+ ||+|+++|+||||.|..+ .++++++++++.++++.+
T Consensus 2 ~~~~~~g~~--~~~~~li~~hg~~~~~~~~~~~~~~l~~---~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~~~i~~~ 76 (251)
T TIGR02427 2 LHYRLDGAA--DGAPVLVFINSLGTDLRMWDPVLPALTP---DFRVLRYDKRGHGLSDAPEGPYSIEDLADDVLALLDHL 76 (251)
T ss_pred ceEEeecCC--CCCCeEEEEcCcccchhhHHHHHHHhhc---ccEEEEecCCCCCCCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 456666542 2578999999999999999999999975 469999999999998543 479999999999999999
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCc-cccC-hHHHHHHH
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPK-EVIS-KQEVVNAL 211 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~ 211 (339)
+.++++++||||||.+++.+|.++|+ ++.++++++++...... ..+...+..... .... .......+
T Consensus 77 ~~~~v~liG~S~Gg~~a~~~a~~~p~---~v~~li~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (251)
T TIGR02427 77 GIERAVFCGLSLGGLIAQGLAARRPD---RVRALVLSNTAAKIGTP--------ESWNARIAAVRAEGLAALADAVLERW 145 (251)
T ss_pred CCCceEEEEeCchHHHHHHHHHHCHH---HhHHHhhccCccccCch--------hhHHHHHhhhhhccHHHHHHHHHHHH
Confidence 99999999999999999999999998 67788888765322110 111111100000 0000 00000000
Q ss_pred HHcCCc---hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhh
Q 045335 212 IQQGFS---KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWAL 288 (339)
Q Consensus 212 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~ 288 (339)
....+. ....+.+...+.. ............+...+....+.+++ +|+++++|++|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~Pvlii~g~~D------ 204 (251)
T TIGR02427 146 FTPGFREAHPARLDLYRNMLVR-------------QPPDGYAGCCAAIRDADFRDRLGAIA--VPTLCIAGDQD------ 204 (251)
T ss_pred cccccccCChHHHHHHHHHHHh-------------cCHHHHHHHHHHHhcccHHHHhhhcC--CCeEEEEeccC------
Confidence 000000 0000000100000 00111111222222333445555666 99999999998
Q ss_pred hhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 289 EDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 289 ~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
..++.+....+.+. .++.++++++++||++++++|+++++.|.+|++
T Consensus 205 -~~~~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~~~p~~~~~~i~~fl~ 251 (251)
T TIGR02427 205 -GSTPPELVREIADL-VPGARFAEIRGAGHIPCVEQPEAFNAALRDFLR 251 (251)
T ss_pred -CcCChHHHHHHHHh-CCCceEEEECCCCCcccccChHHHHHHHHHHhC
Confidence 46677777777766 589999999999999999999999999999984
No 27
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=99.97 E-value=5.4e-30 Score=226.35 Aligned_cols=271 Identities=12% Similarity=0.116 Sum_probs=164.5
Q ss_pred EeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhh-------------HHHHHH---HH-HHhCCCceEEEEeeCCC-C
Q 045335 49 DLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKN-------------WGTFAR---RL-ARAYPTWQTCDVMVIPH-Q 110 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~-------------~~~~~~---~L-~~~~~g~~vi~~D~~G~-G 110 (339)
..++|.+++|..+|..+..++|+|||+||++++... |..++. .| .+ +|+||++|++|+ |
T Consensus 28 ~~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~l~~~---~~~vi~~Dl~G~~~ 104 (379)
T PRK00175 28 AVLPPVELAYETYGTLNADRSNAVLICHALTGDHHVAGPHSPDDPKPGWWDNMVGPGKPIDTD---RYFVICSNVLGGCK 104 (379)
T ss_pred CCcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhcccccccCCCCcchhhccCCCCccCcc---ceEEEeccCCCCCC
Confidence 355788899999986333347899999999999975 666652 33 44 459999999993 4
Q ss_pred CC-CC---------------CCCCHHHHHHHHHHHHHHcCCCc-eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 111 SR-KG---------------GLTTVASTALDVLKLVAQLRITP-RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 111 ~S-~~---------------~~~~~~~~a~dl~~~l~~l~~~~-~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
.| .+ +.++++++++++.++++++++++ ++|+||||||++++.+|.++|+ +|.++|++++.
T Consensus 105 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~ 181 (379)
T PRK00175 105 GSTGPSSINPDTGKPYGSDFPVITIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPD---RVRSALVIASS 181 (379)
T ss_pred CCCCCCCCCCCCCCcccCCCCcCCHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChH---hhhEEEEECCC
Confidence 33 21 15799999999999999999999 4899999999999999999999 78899999876
Q ss_pred CCCCcCCCCCCCChHHHHHHhhcCCc----cc-----cChHH--HHHHHHH--cCCchHHHHHHHHhccCCCC-CCCC--
Q 045335 174 PGKVRAGGDGEDHPAELIHFLSKLPK----EV-----ISKQE--VVNALIQ--QGFSKDVAQWVVTNLKPAAS-FGAS-- 237 (339)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-----~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~-- 237 (339)
+........ ........+...+. .+ ..... ....... ..........+......... ....
T Consensus 182 ~~~~~~~~~---~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~f~~~~~~~~~~~~~~~~ 258 (379)
T PRK00175 182 ARLSAQNIA---FNEVARQAILADPDWHGGDYYEHGVVPERGLAVARMIGHITYLSDDELDEKFGRELQSGELPFGFDVE 258 (379)
T ss_pred cccCHHHHH---HHHHHHHHHHhCCCCCCCCcccCCCChhHHHHHHHHHHHHHhcCHHHHHhhcCccccccccccCCCcc
Confidence 543211000 00000111111000 00 00000 0000000 00000000000000000000 0000
Q ss_pred -----------CCccceechHHHHHHHhhhhh--------hhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHH
Q 045335 238 -----------SSFSWVFDLEGIAEMYQSYDE--------TNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAE 298 (339)
Q Consensus 238 -----------~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~ 298 (339)
..+.+..+..........+.. .+++..+.+++ +|+|+|.|+.| .++++...+
T Consensus 259 ~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~d~~~~~~~d~~~~l~~I~--~PtLvI~G~~D-------~~~p~~~~~ 329 (379)
T PRK00175 259 FQVESYLRYQGDKFVERFDANSYLYLTRALDYFDPARGRGGDLAAALARIK--ARFLVVSFTSD-------WLFPPARSR 329 (379)
T ss_pred chHHHHHHHHHHHHhhccCchHHHHHHHHHHhccccCCCCCCHHHHHhcCC--CCEEEEEECCc-------cccCHHHHH
Confidence 000111222222222222211 23567788888 99999999997 466777777
Q ss_pred HHHHhCCCCe----eEEEec-CCCccccccChhHHHHHHHHhhhc
Q 045335 299 ELAVDGGGGV----EMHVLE-DAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 299 ~~~~~~~~~~----~~~~i~-~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
++++. ++++ ++++++ ++||++++|+|++|++.|.+||++
T Consensus 330 ~la~~-i~~a~~~~~l~~i~~~~GH~~~le~p~~~~~~L~~FL~~ 373 (379)
T PRK00175 330 EIVDA-LLAAGADVSYAEIDSPYGHDAFLLDDPRYGRLVRAFLER 373 (379)
T ss_pred HHHHH-HHhcCCCeEEEEeCCCCCchhHhcCHHHHHHHHHHHHHh
Confidence 77776 5776 788885 899999999999999999999975
No 28
>PHA02857 monoglyceride lipase; Provisional
Probab=99.97 E-value=2.5e-29 Score=213.92 Aligned_cols=256 Identities=12% Similarity=0.154 Sum_probs=161.7
Q ss_pred EEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCC---CHHHHHH
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLT---TVASTAL 124 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~---~~~~~a~ 124 (339)
+...||..++|..+-+. +..++.|+++||++++...|..+++.|++. ||+|+++|+||||.|+.... ++.++++
T Consensus 5 ~~~~~g~~l~~~~~~~~-~~~~~~v~llHG~~~~~~~~~~~~~~l~~~--g~~via~D~~G~G~S~~~~~~~~~~~~~~~ 81 (276)
T PHA02857 5 MFNLDNDYIYCKYWKPI-TYPKALVFISHGAGEHSGRYEELAENISSL--GILVFSHDHIGHGRSNGEKMMIDDFGVYVR 81 (276)
T ss_pred eecCCCCEEEEEeccCC-CCCCEEEEEeCCCccccchHHHHHHHHHhC--CCEEEEccCCCCCCCCCccCCcCCHHHHHH
Confidence 45668999999888653 233456677799999999999999999887 78999999999999975443 5566667
Q ss_pred HHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhc--CC
Q 045335 125 DVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSK--LP 198 (339)
Q Consensus 125 dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 198 (339)
|+.+.++.+ ..++++|+||||||.+|+.+|.++|+ +++++|++++...... ......+...+.. .+
T Consensus 82 d~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~---~i~~lil~~p~~~~~~-----~~~~~~~~~~~~~~~~~ 153 (276)
T PHA02857 82 DVVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPN---LFTAMILMSPLVNAEA-----VPRLNLLAAKLMGIFYP 153 (276)
T ss_pred HHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCcc---ccceEEEecccccccc-----ccHHHHHHHHHHHHhCC
Confidence 777766553 34689999999999999999999999 6779998876432110 0001111111000 00
Q ss_pred ccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEe
Q 045335 199 KEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLK 278 (339)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~ 278 (339)
...... .... ................... .. ............ . ..+....+.+++ +|+++++
T Consensus 154 ~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~---~~----~~~~~~~~~~~~-~-~~~~~~~l~~i~--~Pvliv~ 216 (276)
T PHA02857 154 NKIVGK--LCPE----SVSRDMDEVYKYQYDPLVN---HE----KIKAGFASQVLK-A-TNKVRKIIPKIK--TPILILQ 216 (276)
T ss_pred CCccCC--CCHh----hccCCHHHHHHHhcCCCcc---CC----CccHHHHHHHHH-H-HHHHHHhcccCC--CCEEEEe
Confidence 000000 0000 0001111100000000000 00 001111111111 1 122345566666 9999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccCh---hHHHHHHHHhhhc
Q 045335 279 AERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNP---DGLFRILTSSFEG 338 (339)
Q Consensus 279 g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p---~~~~~~i~~fl~~ 338 (339)
|++| .+++++..+++.+...+++++++++++||.++.|++ +++.+.+.+||.+
T Consensus 217 G~~D-------~i~~~~~~~~l~~~~~~~~~~~~~~~~gH~~~~e~~~~~~~~~~~~~~~l~~ 272 (276)
T PHA02857 217 GTNN-------EISDVSGAYYFMQHANCNREIKIYEGAKHHLHKETDEVKKSVMKEIETWIFN 272 (276)
T ss_pred cCCC-------CcCChHHHHHHHHHccCCceEEEeCCCcccccCCchhHHHHHHHHHHHHHHH
Confidence 9998 578888888888876567999999999999999976 5789999999864
No 29
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=99.97 E-value=7e-29 Score=209.58 Aligned_cols=243 Identities=18% Similarity=0.196 Sum_probs=157.4
Q ss_pred eCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHHHHHHHHH
Q 045335 52 QGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVASTALDVLK 128 (339)
Q Consensus 52 ~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~~a~dl~~ 128 (339)
+|..+.|..- ++++|+|||+||++.+...|..+...|.+. ||+|+++|+||||.|... .++++++++++.+
T Consensus 5 ~~~~~~~~~~----~~~~p~vvliHG~~~~~~~w~~~~~~L~~~--g~~vi~~dl~g~G~s~~~~~~~~~~~~~~~~l~~ 78 (273)
T PLN02211 5 NGEEVTDMKP----NRQPPHFVLIHGISGGSWCWYKIRCLMENS--GYKVTCIDLKSAGIDQSDADSVTTFDEYNKPLID 78 (273)
T ss_pred cccccccccc----cCCCCeEEEECCCCCCcCcHHHHHHHHHhC--CCEEEEecccCCCCCCCCcccCCCHHHHHHHHHH
Confidence 5667777652 135789999999999999999999999876 789999999999987432 3799999999999
Q ss_pred HHHHcC-CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcC-------C--
Q 045335 129 LVAQLR-ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKL-------P-- 198 (339)
Q Consensus 129 ~l~~l~-~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-- 198 (339)
++++++ .++++||||||||++++.++.++|+ +|.++|++++........ ....+...+..+ .
T Consensus 79 ~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~---~v~~lv~~~~~~~~~g~~-----~~~~~~~~~~~~~~~~~~~~~~ 150 (273)
T PLN02211 79 FLSSLPENEKVILVGHSAGGLSVTQAIHRFPK---KICLAVYVAATMLKLGFQ-----TDEDMKDGVPDLSEFGDVYELG 150 (273)
T ss_pred HHHhcCCCCCEEEEEECchHHHHHHHHHhChh---heeEEEEeccccCCCCCC-----HHHHHhccccchhhhccceeee
Confidence 999985 5899999999999999999999999 778999987643211100 000000000000 0
Q ss_pred ---------ccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCC
Q 045335 199 ---------KEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLP 269 (339)
Q Consensus 199 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (339)
.......+....+...........+......... ...+...+.......+.
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~ 210 (273)
T PLN02211 151 FGLGPDQPPTSAIIKKEFRRKILYQMSPQEDSTLAAMLLRPGP--------------------ILALRSARFEEETGDID 210 (273)
T ss_pred eccCCCCCCceeeeCHHHHHHHHhcCCCHHHHHHHHHhcCCcC--------------------ccccccccccccccccC
Confidence 0000001111111111111111111111111100 00011111111111221
Q ss_pred CCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 270 QGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 270 ~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.+|+++|.|++| ..++++..+.+.+. .++.++++++ +||.+++++|++|++.|.++...
T Consensus 211 -~vP~l~I~g~~D-------~~ip~~~~~~m~~~-~~~~~~~~l~-~gH~p~ls~P~~~~~~i~~~a~~ 269 (273)
T PLN02211 211 -KVPRVYIKTLHD-------HVVKPEQQEAMIKR-WPPSQVYELE-SDHSPFFSTPFLLFGLLIKAAAS 269 (273)
T ss_pred -ccceEEEEeCCC-------CCCCHHHHHHHHHh-CCccEEEEEC-CCCCccccCHHHHHHHHHHHHHH
Confidence 389999999997 46788888888876 5888999996 79999999999999999988653
No 30
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=99.97 E-value=5e-28 Score=206.80 Aligned_cols=262 Identities=13% Similarity=0.119 Sum_probs=157.2
Q ss_pred EEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh-hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-----CCCHHH
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK-NWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-----LTTVAS 121 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~-~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-----~~~~~~ 121 (339)
+...++.++.|...+..+ .+++|||+||++++.. .|..+...|.+. ||+|+++|+||||.|..+ .+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~--~~~~vl~~hG~~g~~~~~~~~~~~~l~~~--g~~vi~~d~~G~G~s~~~~~~~~~~~~~~ 81 (288)
T TIGR01250 6 IITVDGGYHLFTKTGGEG--EKIKLLLLHGGPGMSHEYLENLRELLKEE--GREVIMYDQLGCGYSDQPDDSDELWTIDY 81 (288)
T ss_pred eecCCCCeEEEEeccCCC--CCCeEEEEcCCCCccHHHHHHHHHHHHhc--CCEEEEEcCCCCCCCCCCCcccccccHHH
Confidence 456777788888776432 3689999999876654 455555555553 679999999999999643 278999
Q ss_pred HHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccc
Q 045335 122 TALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEV 201 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (339)
+++++.+++++++.++++++||||||.+++.+|.++|+ ++.+++++++....... ..........++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~-------~~~~~~~~~~~~~~~ 151 (288)
T TIGR01250 82 FVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQ---HLKGLIISSMLDSAPEY-------VKELNRLRKELPPEV 151 (288)
T ss_pred HHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCcc---ccceeeEecccccchHH-------HHHHHHHHhhcChhH
Confidence 99999999999999999999999999999999999999 77788887764321100 000001111111000
Q ss_pred cChHHHHHHHHHc-C-CchHHHHHHHHhc----cCCCCCCC-CCCccceechHHHHH--------HHhhhhhhhhhhhhh
Q 045335 202 ISKQEVVNALIQQ-G-FSKDVAQWVVTNL----KPAASFGA-SSSFSWVFDLEGIAE--------MYQSYDETNLWKLVE 266 (339)
Q Consensus 202 ~~~~~~~~~~~~~-~-~~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~ 266 (339)
.......... . ........+.... ........ ............+.. ....+...+....+.
T Consensus 152 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 228 (288)
T TIGR01250 152 ---RAAIKRCEASGDYDNPEYQEAVEVFYHHLLCRTRKWPEALKHLKSGMNTNVYNIMQGPNEFTITGNLKDWDITDKLS 228 (288)
T ss_pred ---HHHHHHHHhccCcchHHHHHHHHHHHHHhhcccccchHHHHHHhhccCHHHHhcccCCccccccccccccCHHHHhh
Confidence 0000000000 0 0000011110000 00000000 000000000000000 000111223334555
Q ss_pred cCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 267 NLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 267 ~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
.++ +|++++.|+.|. .++...+.+.+. ++++++++++++||++++|+|++|++.|.+||+
T Consensus 229 ~i~--~P~lii~G~~D~--------~~~~~~~~~~~~-~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~ 288 (288)
T TIGR01250 229 EIK--VPTLLTVGEFDT--------MTPEAAREMQEL-IAGSRLVVFPDGSHMTMIEDPEVYFKLLSDFIR 288 (288)
T ss_pred ccC--CCEEEEecCCCc--------cCHHHHHHHHHh-ccCCeEEEeCCCCCCcccCCHHHHHHHHHHHhC
Confidence 566 999999999873 344556666665 689999999999999999999999999999985
No 31
>PRK10749 lysophospholipase L2; Provisional
Probab=99.96 E-value=1.7e-28 Score=213.26 Aligned_cols=270 Identities=10% Similarity=0.050 Sum_probs=166.2
Q ss_pred cceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--------
Q 045335 44 GVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-------- 115 (339)
Q Consensus 44 ~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-------- 115 (339)
....+...+|..++|..+++. ..+++||++||++++...|..++..|.+. ||+|+++|+||||.|+.+
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~--~~~~~vll~HG~~~~~~~y~~~~~~l~~~--g~~v~~~D~~G~G~S~~~~~~~~~~~ 106 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAP--HHDRVVVICPGRIESYVKYAELAYDLFHL--GYDVLIIDHRGQGRSGRLLDDPHRGH 106 (330)
T ss_pred cceEEEcCCCCEEEEEEccCC--CCCcEEEEECCccchHHHHHHHHHHHHHC--CCeEEEEcCCCCCCCCCCCCCCCcCc
Confidence 446677789999999998753 24678999999999999999999888876 889999999999999542
Q ss_pred CCCHHHHHHHHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHH
Q 045335 116 LTTVASTALDVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELI 191 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~ 191 (339)
..+++++++|+..+++.+ +..+++++||||||.+++.+|.++|+ .+.++|++++........ . ........
T Consensus 107 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~---~v~~lvl~~p~~~~~~~~-~-~~~~~~~~ 181 (330)
T PRK10749 107 VERFNDYVDDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPG---VFDAIALCAPMFGIVLPL-P-SWMARRIL 181 (330)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCC---CcceEEEECchhccCCCC-C-cHHHHHHH
Confidence 158999999999999886 66799999999999999999999999 677888886653322111 0 00001111
Q ss_pred HHhhcCCccccCh----HHHHH-HHHHcC--CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhh
Q 045335 192 HFLSKLPKEVISK----QEVVN-ALIQQG--FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKL 264 (339)
Q Consensus 192 ~~~~~~~~~~~~~----~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (339)
......+...... ..... .+.... ........+........... ..... .......+.. .......
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~--~~~~~~~ 254 (330)
T PRK10749 182 NWAEGHPRIRDGYAIGTGRWRPLPFAINVLTHSRERYRRNLRFYADDPELR-VGGPT----YHWVRESILA--GEQVLAG 254 (330)
T ss_pred HHHHHhcCCCCcCCCCCCCCCCCCcCCCCCCCCHHHHHHHHHHHHhCCCcc-cCCCc----HHHHHHHHHH--HHHHHhh
Confidence 1111000000000 00000 000000 00111011111111111000 00000 1111111111 1122334
Q ss_pred hhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhC------CCCeeEEEecCCCccccccCh---hHHHHHHHHh
Q 045335 265 VENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDG------GGGVEMHVLEDAGHWVHADNP---DGLFRILTSS 335 (339)
Q Consensus 265 ~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~------~~~~~~~~i~~~gH~~~~e~p---~~~~~~i~~f 335 (339)
+.+++ +|+|+|+|++| .++++.....+.+.+ .++++++++||+||.++.|.+ +++.+.|.+|
T Consensus 255 ~~~i~--~P~Lii~G~~D-------~vv~~~~~~~~~~~l~~~~~~~~~~~l~~~~gagH~~~~E~~~~r~~v~~~i~~f 325 (330)
T PRK10749 255 AGDIT--TPLLLLQAEEE-------RVVDNRMHDRFCEARTAAGHPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVDF 325 (330)
T ss_pred ccCCC--CCEEEEEeCCC-------eeeCHHHHHHHHHHHhhcCCCCCCceEEEeCCCcchhhhCCcHHHHHHHHHHHHH
Confidence 45555 89999999998 466666666665542 256789999999999999986 6788999999
Q ss_pred hhc
Q 045335 336 FEG 338 (339)
Q Consensus 336 l~~ 338 (339)
|++
T Consensus 326 l~~ 328 (330)
T PRK10749 326 FNR 328 (330)
T ss_pred Hhh
Confidence 975
No 32
>KOG1454 consensus Predicted hydrolase/acyltransferase (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.96 E-value=3.1e-29 Score=214.46 Aligned_cols=251 Identities=21% Similarity=0.238 Sum_probs=156.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC-CCCC---CCCCHHHHHHHHHHHHHHcCCCceEEEE
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ-SRKG---GLTTVASTALDVLKLVAQLRITPRVLVG 142 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G-~S~~---~~~~~~~~a~dl~~~l~~l~~~~~~lvG 142 (339)
.++++||++|||+++...|+.+++.|.+.+ |++|+++|++|+| .|.. ..|+..++++.+..++.....++++|||
T Consensus 56 ~~~~pvlllHGF~~~~~~w~~~~~~L~~~~-~~~v~aiDl~G~g~~s~~~~~~~y~~~~~v~~i~~~~~~~~~~~~~lvg 134 (326)
T KOG1454|consen 56 KDKPPVLLLHGFGASSFSWRRVVPLLSKAK-GLRVLAIDLPGHGYSSPLPRGPLYTLRELVELIRRFVKEVFVEPVSLVG 134 (326)
T ss_pred CCCCcEEEeccccCCcccHhhhcccccccc-ceEEEEEecCCCCcCCCCCCCCceehhHHHHHHHHHHHhhcCcceEEEE
Confidence 578999999999999999999999999986 7799999999999 4432 3499999999999999999999999999
Q ss_pred EchhHHHHHHHHHHccCCCCCCceEEEEe---ccCCCCcCCCCCC-CChHHHHHHhhcCCcc-ccChHH-HHHHHHHcC-
Q 045335 143 HSFGGKVVLSMVEQAAKPLARPVRVWVLD---ATPGKVRAGGDGE-DHPAELIHFLSKLPKE-VISKQE-VVNALIQQG- 215 (339)
Q Consensus 143 hS~Gg~ia~~~a~~~p~~~~~v~~lv~l~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~- 215 (339)
||+||.+|+.+|+.+|+ .|.++++++ ++....+...... ................ ...... ....+....
T Consensus 135 hS~Gg~va~~~Aa~~P~---~V~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 211 (326)
T KOG1454|consen 135 HSLGGIVALKAAAYYPE---TVDSLVLLDLLGPPVYSTPKGIKGLRRLLDKFLSALELLIPLSLTEPVRLVSEGLLRCLK 211 (326)
T ss_pred eCcHHHHHHHHHHhCcc---cccceeeecccccccccCCcchhHHHHhhhhhccHhhhcCccccccchhheeHhhhccee
Confidence 99999999999999999 677888544 3222111110000 0000000000001000 000000 000000000
Q ss_pred ---Cc-hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhh--hhhhhhhhcCCCCceeeEEeccchhhhhhhh
Q 045335 216 ---FS-KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDE--TNLWKLVENLPQGVHVNFLKAERSLHRWALE 289 (339)
Q Consensus 216 ---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~ 289 (339)
.. ....+.....+.... ......+.....+..+.. ......+.++. ++|++++.|++|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~pvlii~G~~D------- 275 (326)
T KOG1454|consen 212 VVYTDPSRLLEKLLHLLSRPV--------KEHFHRDARLSLFLELLGFDENLLSLIKKIW-KCPVLIIWGDKD------- 275 (326)
T ss_pred eeccccccchhhhhhheeccc--------ccchhhhheeeEEEeccCccchHHHhhcccc-CCceEEEEcCcC-------
Confidence 00 000111111111100 000000111111111111 11111222221 389999999998
Q ss_pred hHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 290 DIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 290 d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.+++.+....+.++. |++++++++++||.+|+|+|++|++.|..|++.
T Consensus 276 ~~~p~~~~~~~~~~~-pn~~~~~I~~~gH~~h~e~Pe~~~~~i~~Fi~~ 323 (326)
T KOG1454|consen 276 QIVPLELAEELKKKL-PNAELVEIPGAGHLPHLERPEEVAALLRSFIAR 323 (326)
T ss_pred CccCHHHHHHHHhhC-CCceEEEeCCCCcccccCCHHHHHHHHHHHHHH
Confidence 577888888888885 999999999999999999999999999999975
No 33
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=99.96 E-value=7.4e-29 Score=204.14 Aligned_cols=221 Identities=23% Similarity=0.305 Sum_probs=149.6
Q ss_pred EEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC----CCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 72 AVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG----LTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 72 vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~----~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
|||+||++++...|..+++.|++ ||+|+++|+||||.|... .++++++++|+.+++++++.++++|+|||+||
T Consensus 1 vv~~hG~~~~~~~~~~~~~~l~~---~~~v~~~d~~G~G~s~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lvG~S~Gg 77 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDPLAEALAR---GYRVIAFDLPGHGRSDPPPDYSPYSIEDYAEDLAELLDALGIKKVILVGHSMGG 77 (228)
T ss_dssp EEEE-STTTTGGGGHHHHHHHHT---TSEEEEEECTTSTTSSSHSSGSGGSHHHHHHHHHHHHHHTTTSSEEEEEETHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHhC---CCEEEEEecCCccccccccccCCcchhhhhhhhhhccccccccccccccccccc
Confidence 79999999999999999999963 679999999999999653 58999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCcccc-ChHHHHHH-HHHcCCchHHHHHHH
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVI-SKQEVVNA-LIQQGFSKDVAQWVV 225 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 225 (339)
.+++.+|.++|+ ++.+++++++......... ......++..+..... ........ +..........+.+.
T Consensus 78 ~~a~~~a~~~p~---~v~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (228)
T PF12697_consen 78 MIALRLAARYPD---RVKGLVLLSPPPPLPDSPS-----RSFGPSFIRRLLAWRSRSLRRLASRFFYRWFDGDEPEDLIR 149 (228)
T ss_dssp HHHHHHHHHSGG---GEEEEEEESESSSHHHHHC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred cccccccccccc---ccccceeeccccccccccc-----ccccchhhhhhhhcccccccccccccccccccccccccccc
Confidence 999999999999 7889999987753221100 0000111111100000 00000000 000000111111111
Q ss_pred HhccCCCCCCCCCCccceechHHHHHHHhh-hhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhC
Q 045335 226 TNLKPAASFGASSSFSWVFDLEGIAEMYQS-YDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDG 304 (339)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~ 304 (339)
. ....+...+.. ....+....++.++ +|++++.|+.| .+++....+++.+.
T Consensus 150 ~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~--~pvl~i~g~~D-------~~~~~~~~~~~~~~- 201 (228)
T PF12697_consen 150 S------------------SRRALAEYLRSNLWQADLSEALPRIK--VPVLVIHGEDD-------PIVPPESAEELADK- 201 (228)
T ss_dssp H------------------HHHHHHHHHHHHHHHHHHHHHHHGSS--SEEEEEEETTS-------SSSHHHHHHHHHHH-
T ss_pred c------------------cccccccccccccccccccccccccC--CCeEEeecCCC-------CCCCHHHHHHHHHH-
Confidence 1 12222222222 23344456677776 99999999998 45567777777776
Q ss_pred CCCeeEEEecCCCccccccChhHHHHH
Q 045335 305 GGGVEMHVLEDAGHWVHADNPDGLFRI 331 (339)
Q Consensus 305 ~~~~~~~~i~~~gH~~~~e~p~~~~~~ 331 (339)
.+++++++++++||++++|+|++|+++
T Consensus 202 ~~~~~~~~~~~~gH~~~~~~p~~~~~a 228 (228)
T PF12697_consen 202 LPNAELVVIPGAGHFLFLEQPDEVAEA 228 (228)
T ss_dssp STTEEEEEETTSSSTHHHHSHHHHHHH
T ss_pred CCCCEEEEECCCCCccHHHCHHHHhcC
Confidence 589999999999999999999999874
No 34
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=2.1e-27 Score=210.64 Aligned_cols=264 Identities=16% Similarity=0.147 Sum_probs=151.9
Q ss_pred eEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCC---H----HHHHHHHH
Q 045335 55 LVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTT---V----ASTALDVL 127 (339)
Q Consensus 55 ~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~---~----~~~a~dl~ 127 (339)
.+++..... .+++|+|||+||++++...|...++.|.+.| +|+++|+||||.|+++.++ . +.+++++.
T Consensus 93 ~~~~~~~~~--~~~~p~vvllHG~~~~~~~~~~~~~~L~~~~---~vi~~D~rG~G~S~~~~~~~~~~~~~~~~~~~~i~ 167 (402)
T PLN02894 93 FINTVTFDS--KEDAPTLVMVHGYGASQGFFFRNFDALASRF---RVIAIDQLGWGGSSRPDFTCKSTEETEAWFIDSFE 167 (402)
T ss_pred eEEEEEecC--CCCCCEEEEECCCCcchhHHHHHHHHHHhCC---EEEEECCCCCCCCCCCCcccccHHHHHHHHHHHHH
Confidence 455444432 2467999999999999999999999998765 9999999999999765532 1 23567788
Q ss_pred HHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCC---CChHHHHHH-hhcCCccccC
Q 045335 128 KLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGE---DHPAELIHF-LSKLPKEVIS 203 (339)
Q Consensus 128 ~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~ 203 (339)
++++.+++++++|+||||||.+++.+|.++|+ ++.++|++++............ .....+... +.........
T Consensus 168 ~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~---~v~~lvl~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (402)
T PLN02894 168 EWRKAKNLSNFILLGHSFGGYVAAKYALKHPE---HVQHLILVGPAGFSSESDDKSEWLTKFRATWKGAVLNHLWESNFT 244 (402)
T ss_pred HHHHHcCCCCeEEEEECHHHHHHHHHHHhCch---hhcEEEEECCccccCCcchhHHHHhhcchhHHHHHHHHHhhcCCC
Confidence 88999999999999999999999999999999 7779998876532221110000 000000000 0000000000
Q ss_pred hHHHHHHHHHcCCchHH-HHHHHHhccCCC----CCC-CCCCc--------cceechHHHHHHHhh---hhhhhhhhhhh
Q 045335 204 KQEVVNALIQQGFSKDV-AQWVVTNLKPAA----SFG-ASSSF--------SWVFDLEGIAEMYQS---YDETNLWKLVE 266 (339)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~-~~~~~--------~~~~~~~~~~~~~~~---~~~~~~~~~~~ 266 (339)
......... ...+.. ..+....+.... ... ....+ ............... ....+....+.
T Consensus 245 p~~~~~~~g--p~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 322 (402)
T PLN02894 245 PQKIIRGLG--PWGPNLVRRYTTARFGAHSTGDILSEEESKLLTDYVYHTLAAKASGELCLKYIFSFGAFARKPLLESAS 322 (402)
T ss_pred HHHHHHhcc--chhHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHhhcCCCchHHHHHHhccCchhhcchHhhhcc
Confidence 000100000 000000 001000000000 000 00000 000000000111111 12234445566
Q ss_pred cCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 267 NLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 267 ~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.++ +|+++|+|++|. +.+....++.+...+.+++++++++||++++|+|++|++.|.+|++.
T Consensus 323 ~I~--vP~liI~G~~D~--------i~~~~~~~~~~~~~~~~~~~~i~~aGH~~~~E~P~~f~~~l~~~~~~ 384 (402)
T PLN02894 323 EWK--VPTTFIYGRHDW--------MNYEGAVEARKRMKVPCEIIRVPQGGHFVFLDNPSGFHSAVLYACRK 384 (402)
T ss_pred cCC--CCEEEEEeCCCC--------CCcHHHHHHHHHcCCCCcEEEeCCCCCeeeccCHHHHHHHHHHHHHH
Confidence 665 999999999873 23344445555443568999999999999999999999999998864
No 35
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=99.96 E-value=7.1e-28 Score=209.99 Aligned_cols=267 Identities=13% Similarity=0.146 Sum_probs=163.4
Q ss_pred ceeEEeeeCeeEEEeeccCCCC-CCCCeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCH
Q 045335 45 VLAYDLIQGTLVRWSSMMDKSI-PDPPTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTV 119 (339)
Q Consensus 45 ~~~~~~~~g~~l~~~~~g~~~~-~~~~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~ 119 (339)
...++..||..++|..+++.+. +.+++|||+||++.+. ..|..+...|++. ||+|+++|+||||.|... ..++
T Consensus 34 ~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~~~~~~~~~~~L~~~--Gy~V~~~D~rGhG~S~~~~~~~~~~ 111 (330)
T PLN02298 34 KSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDISWTFQSTAIFLAQM--GFACFALDLEGHGRSEGLRAYVPNV 111 (330)
T ss_pred cceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCcceehhHHHHHHHhC--CCEEEEecCCCCCCCCCccccCCCH
Confidence 4456778999999988875432 3456799999998664 3566777788876 789999999999999642 2589
Q ss_pred HHHHHHHHHHHHHcCC------CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHH
Q 045335 120 ASTALDVLKLVAQLRI------TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHF 193 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~------~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~ 193 (339)
+.+++|+.++++.+.. .+++|+||||||.+++.++.++|+ ++.++|++++......... ...........
T Consensus 112 ~~~~~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~---~v~~lvl~~~~~~~~~~~~-~~~~~~~~~~~ 187 (330)
T PLN02298 112 DLVVEDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPE---GFDGAVLVAPMCKISDKIR-PPWPIPQILTF 187 (330)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCcc---cceeEEEecccccCCcccC-CchHHHHHHHH
Confidence 9999999999998753 368999999999999999999998 7779988876532221100 00001111111
Q ss_pred hhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCce
Q 045335 194 LSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVH 273 (339)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 273 (339)
+........... . ...............+... ... .+............+... ......+..++ +|
T Consensus 188 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~--~~~~~~l~~i~--~P 253 (330)
T PLN02298 188 VARFLPTLAIVP-T-ADLLEKSVKVPAKKIIAKR-NPM-------RYNGKPRLGTVVELLRVT--DYLGKKLKDVS--IP 253 (330)
T ss_pred HHHHCCCCcccc-C-CCcccccccCHHHHHHHHh-Ccc-------ccCCCccHHHHHHHHHHH--HHHHHhhhhcC--CC
Confidence 111100000000 0 0000000000000111000 000 000000111111111111 11234556666 99
Q ss_pred eeEEeccchhhhhhhhhHHHHHHHHHHHHhC-CCCeeEEEecCCCccccccChhH----HHHHHHHhhhc
Q 045335 274 VNFLKAERSLHRWALEDIQRIHAAEELAVDG-GGGVEMHVLEDAGHWVHADNPDG----LFRILTSSFEG 338 (339)
Q Consensus 274 vl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~----~~~~i~~fl~~ 338 (339)
+|+++|++| .+++++..+++.+.. .++.++++++++||.+++++|+. +.+.|.+||.+
T Consensus 254 vLii~G~~D-------~ivp~~~~~~l~~~i~~~~~~l~~~~~a~H~~~~e~pd~~~~~~~~~i~~fl~~ 316 (330)
T PLN02298 254 FIVLHGSAD-------VVTDPDVSRALYEEAKSEDKTIKIYDGMMHSLLFGEPDENIEIVRRDILSWLNE 316 (330)
T ss_pred EEEEecCCC-------CCCCHHHHHHHHHHhccCCceEEEcCCcEeeeecCCCHHHHHHHHHHHHHHHHH
Confidence 999999997 577888888887764 25799999999999999999864 66677888764
No 36
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=99.96 E-value=2.7e-27 Score=197.77 Aligned_cols=234 Identities=24% Similarity=0.381 Sum_probs=149.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC----CCCCHHHHHHH-HHHHHHHcCCCceEEEEE
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG----GLTTVASTALD-VLKLVAQLRITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~----~~~~~~~~a~d-l~~~l~~l~~~~~~lvGh 143 (339)
+|+|||+||++++...|..+++.|++ ||+|+++|+||||.|+. ..+++++++++ +..+++.++.++++++||
T Consensus 1 ~~~vv~~hG~~~~~~~~~~~~~~L~~---~~~v~~~d~~g~G~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~ 77 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQALIELLGP---HFRCLAIDLPGHGSSQSPDEIERYDFEEAAQDILATLLDQLGIEPFFLVGY 77 (251)
T ss_pred CCEEEEEcCCCCchhhHHHHHHHhcc---cCeEEEEcCCCCCCCCCCCccChhhHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 47899999999999999999999984 56999999999999964 34789999999 788889988899999999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCC--CChHHHHHHhhcCCccccChHHHHHHHHHcC------
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGE--DHPAELIHFLSKLPKEVISKQEVVNALIQQG------ 215 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 215 (339)
|+||.+++.+|.++|+ .+.+++++++.+.......... .....+...+... ........+....
T Consensus 78 S~Gg~ia~~~a~~~~~---~v~~lil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 149 (251)
T TIGR03695 78 SMGGRIALYYALQYPE---RVQGLILESGSPGLATEEERAARRQNDEQLAQRFEQE-----GLEAFLDDWYQQPLFASQK 149 (251)
T ss_pred ccHHHHHHHHHHhCch---heeeeEEecCCCCcCchHhhhhhhhcchhhhhHHHhc-----CccHHHHHHhcCceeeecc
Confidence 9999999999999998 6778988877654321100000 0000000000000 0001111111000
Q ss_pred -CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhh---hhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhH
Q 045335 216 -FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSY---DETNLWKLVENLPQGVHVNFLKAERSLHRWALEDI 291 (339)
Q Consensus 216 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~ 291 (339)
........+....... ........+... ...+.+..+..+. +|++++.|+.|. .
T Consensus 150 ~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~P~l~i~g~~D~-------~ 207 (251)
T TIGR03695 150 NLPPEQRQALRAKRLAN-------------NPEGLAKMLRATGLGKQPSLWPKLQALT--IPVLYLCGEKDE-------K 207 (251)
T ss_pred cCChHHhHHHHHhcccc-------------cchHHHHHHHHhhhhcccchHHHhhCCC--CceEEEeeCcch-------H
Confidence 1111111111111000 011111111111 1123334455555 999999999973 2
Q ss_pred HHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 292 QRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
. ....+++.+. .++++++++|++||++++|+|+++++.|.+||+
T Consensus 208 ~-~~~~~~~~~~-~~~~~~~~~~~~gH~~~~e~~~~~~~~i~~~l~ 251 (251)
T TIGR03695 208 F-VQIAKEMQKL-LPNLTLVIIANAGHNIHLENPEAFAKILLAFLE 251 (251)
T ss_pred H-HHHHHHHHhc-CCCCcEEEEcCCCCCcCccChHHHHHHHHHHhC
Confidence 2 2344555554 689999999999999999999999999999984
No 37
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.96 E-value=7.7e-27 Score=207.10 Aligned_cols=252 Identities=21% Similarity=0.266 Sum_probs=160.7
Q ss_pred EEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC--CCCCHHHHHHH
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG--GLTTVASTALD 125 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--~~~~~~~~a~d 125 (339)
+...++..++|...|+ +++++|||+||++++...|..+...|.+.| +|+++|+||||.|.. ...++++++++
T Consensus 113 ~~~~~~~~i~~~~~g~---~~~~~vl~~HG~~~~~~~~~~~~~~l~~~~---~v~~~d~~g~G~s~~~~~~~~~~~~~~~ 186 (371)
T PRK14875 113 KARIGGRTVRYLRLGE---GDGTPVVLIHGFGGDLNNWLFNHAALAAGR---PVIALDLPGHGASSKAVGAGSLDELAAA 186 (371)
T ss_pred cceEcCcEEEEecccC---CCCCeEEEECCCCCccchHHHHHHHHhcCC---EEEEEcCCCCCCCCCCCCCCCHHHHHHH
Confidence 4455788888887765 347899999999999999999999998765 999999999999943 45899999999
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChH
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQ 205 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (339)
+.++++.++.++++|+|||+||.+++.+|.++|+ ++.+++++++....... ...+...+...... ....
T Consensus 187 ~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~v~~lv~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~ 255 (371)
T PRK14875 187 VLAFLDALGIERAHLVGHSMGGAVALRLAARAPQ---RVASLTLIAPAGLGPEI-------NGDYIDGFVAAESR-RELK 255 (371)
T ss_pred HHHHHHhcCCccEEEEeechHHHHHHHHHHhCch---heeEEEEECcCCcCccc-------chhHHHHhhcccch-hHHH
Confidence 9999999999999999999999999999999998 77788888654221110 01111111100000 0000
Q ss_pred HHHHHHHHc--CCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHH-Hhh-hhhhhhhhhhhcCCCCceeeEEeccc
Q 045335 206 EVVNALIQQ--GFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEM-YQS-YDETNLWKLVENLPQGVHVNFLKAER 281 (339)
Q Consensus 206 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~pvl~i~g~~ 281 (339)
......... .........+........ ........... +.. ....+....+..++ +|+++++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~--~Pvlii~g~~ 324 (371)
T PRK14875 256 PVLELLFADPALVTRQMVEDLLKYKRLDG---------VDDALRALADALFAGGRQRVDLRDRLASLA--IPVLVIWGEQ 324 (371)
T ss_pred HHHHHHhcChhhCCHHHHHHHHHHhcccc---------HHHHHHHHHHHhccCcccchhHHHHHhcCC--CCEEEEEECC
Confidence 000000000 000111111110000000 00000000000 000 01122334455565 9999999999
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 282 SLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 282 d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
| .++++...+. +.+++++.+++++||++++++|+++++.|.+||++
T Consensus 325 D-------~~vp~~~~~~----l~~~~~~~~~~~~gH~~~~e~p~~~~~~i~~fl~~ 370 (371)
T PRK14875 325 D-------RIIPAAHAQG----LPDGVAVHVLPGAGHMPQMEAAADVNRLLAEFLGK 370 (371)
T ss_pred C-------CccCHHHHhh----ccCCCeEEEeCCCCCChhhhCHHHHHHHHHHHhcc
Confidence 8 3455544433 23578999999999999999999999999999975
No 38
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=99.96 E-value=5.6e-27 Score=237.39 Aligned_cols=245 Identities=16% Similarity=0.242 Sum_probs=158.5
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC----------CCCHHHHHHH
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG----------LTTVASTALD 125 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~----------~~~~~~~a~d 125 (339)
++|+..|. .+++++|||+||++++...|..++..|.+.| +|+++|+||||.|... .+++++++++
T Consensus 1360 i~~~~~G~--~~~~~~vVllHG~~~s~~~w~~~~~~L~~~~---rVi~~Dl~G~G~S~~~~~~~~~~~~~~~si~~~a~~ 1434 (1655)
T PLN02980 1360 IKVHEVGQ--NAEGSVVLFLHGFLGTGEDWIPIMKAISGSA---RCISIDLPGHGGSKIQNHAKETQTEPTLSVELVADL 1434 (1655)
T ss_pred EEEEecCC--CCCCCeEEEECCCCCCHHHHHHHHHHHhCCC---EEEEEcCCCCCCCCCccccccccccccCCHHHHHHH
Confidence 34444443 2246899999999999999999999998765 9999999999988532 4789999999
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhc-CCcc--cc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSK-LPKE--VI 202 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~ 202 (339)
+.+++++++.++++|+||||||.+++.+|.++|+ +|.+++++++.+...... .......... .... ..
T Consensus 1435 l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~---~V~~lVlis~~p~~~~~~------~~~~~~~~~~~~~~~l~~~ 1505 (1655)
T PLN02980 1435 LYKLIEHITPGKVTLVGYSMGARIALYMALRFSD---KIEGAVIISGSPGLKDEV------ARKIRSAKDDSRARMLIDH 1505 (1655)
T ss_pred HHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChH---hhCEEEEECCCCccCchH------HHHHHhhhhhHHHHHHHhh
Confidence 9999999999999999999999999999999999 778999998765432110 0000000000 0000 00
Q ss_pred ChHHHHHHHHHcC------CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhh---hhhhhhhhhhcCCCCce
Q 045335 203 SKQEVVNALIQQG------FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSY---DETNLWKLVENLPQGVH 273 (339)
Q Consensus 203 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p 273 (339)
....+...+.... ..+...+.+...+.. .+.......+..+ ...+.+..+..++ +|
T Consensus 1506 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~dl~~~L~~I~--~P 1570 (1655)
T PLN02980 1506 GLEIFLENWYSGELWKSLRNHPHFNKIVASRLLH-------------KDVPSLAKLLSDLSIGRQPSLWEDLKQCD--TP 1570 (1655)
T ss_pred hHHHHHHHhccHHHhhhhccCHHHHHHHHHHHhc-------------CCHHHHHHHHHHhhhcccchHHHHHhhCC--CC
Confidence 0001111111000 000111111111111 1122222222222 2334566777777 99
Q ss_pred eeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCC------------eeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 274 VNFLKAERSLHRWALEDIQRIHAAEELAVDGGGG------------VEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 274 vl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~------------~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+|+|+|++|. .. +....++.+. +++ ++++++|++||++++|+|++|++.|.+||++
T Consensus 1571 tLlI~Ge~D~-------~~-~~~a~~~~~~-i~~a~~~~~~~~~~~a~lvvI~~aGH~~~lE~Pe~f~~~I~~FL~~ 1638 (1655)
T PLN02980 1571 LLLVVGEKDV-------KF-KQIAQKMYRE-IGKSKESGNDKGKEIIEIVEIPNCGHAVHLENPLPVIRALRKFLTR 1638 (1655)
T ss_pred EEEEEECCCC-------cc-HHHHHHHHHH-ccccccccccccccceEEEEECCCCCchHHHCHHHHHHHHHHHHHh
Confidence 9999999973 22 2334444443 343 5899999999999999999999999999975
No 39
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=99.95 E-value=1e-25 Score=194.07 Aligned_cols=119 Identities=17% Similarity=0.149 Sum_probs=96.3
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC----CCCHHHH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG----LTTVAST 122 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~----~~~~~~~ 122 (339)
.+...+|.+++|...|. +++++|||+||++++...+ .+...+... +|+|+++|+||||.|..+ .++.+++
T Consensus 8 ~~~~~~~~~l~y~~~g~---~~~~~lvllHG~~~~~~~~-~~~~~~~~~--~~~vi~~D~~G~G~S~~~~~~~~~~~~~~ 81 (306)
T TIGR01249 8 YLNVSDNHQLYYEQSGN---PDGKPVVFLHGGPGSGTDP-GCRRFFDPE--TYRIVLFDQRGCGKSTPHACLEENTTWDL 81 (306)
T ss_pred eEEcCCCcEEEEEECcC---CCCCEEEEECCCCCCCCCH-HHHhccCcc--CCEEEEECCCCCCCCCCCCCcccCCHHHH
Confidence 34455788999998875 2467899999998876544 333344333 579999999999999643 3578899
Q ss_pred HHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 123 ALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 123 a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
++|+..+++++++++++++||||||.+++.++.++|+ ++.++|++++..
T Consensus 82 ~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~---~v~~lvl~~~~~ 130 (306)
T TIGR01249 82 VADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPE---VVTGLVLRGIFL 130 (306)
T ss_pred HHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChH---hhhhheeecccc
Confidence 9999999999999999999999999999999999999 777888887653
No 40
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=99.95 E-value=1e-25 Score=198.23 Aligned_cols=264 Identities=13% Similarity=0.118 Sum_probs=161.7
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHHHH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVASTA 123 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~~a 123 (339)
.+...++..++|..+.+.....+++|||+||++++...|..+++.|++. ||+|+++|+||||.|+.. ..+++.++
T Consensus 114 ~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~~~a~~L~~~--Gy~V~~~D~rGhG~S~~~~~~~~~~~~~~ 191 (395)
T PLN02652 114 LFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYLHFAKQLTSC--GFGVYAMDWIGHGGSDGLHGYVPSLDYVV 191 (395)
T ss_pred EEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHHHHHHHHHHC--CCEEEEeCCCCCCCCCCCCCCCcCHHHHH
Confidence 3444567788888887743344678999999999999999999999887 899999999999999654 25888999
Q ss_pred HHHHHHHHHcCC----CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCc
Q 045335 124 LDVLKLVAQLRI----TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPK 199 (339)
Q Consensus 124 ~dl~~~l~~l~~----~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (339)
+|+.++++.+.. .+++|+||||||.+++.++ .+|+...++.++++.++....... ..........+.....
T Consensus 192 ~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p~~~~~v~glVL~sP~l~~~~~----~~~~~~~~~l~~~~~p 266 (395)
T PLN02652 192 EDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYPSIEDKLEGIVLTSPALRVKPA----HPIVGAVAPIFSLVAP 266 (395)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hccCcccccceEEEECcccccccc----hHHHHHHHHHHHHhCC
Confidence 999999988753 3799999999999999776 467533367788876544211100 0000000000110000
Q ss_pred cccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEec
Q 045335 200 EVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKA 279 (339)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g 279 (339)
.+.. ..... ......... ........... .+............+.. .......+.+++ +|+|+++|
T Consensus 267 ~~~~-~~~~~--~~~~~s~~~-~~~~~~~~dp~------~~~g~i~~~~~~~~~~~--~~~l~~~L~~I~--vPvLIi~G 332 (395)
T PLN02652 267 RFQF-KGANK--RGIPVSRDP-AALLAKYSDPL------VYTGPIRVRTGHEILRI--SSYLTRNFKSVT--VPFMVLHG 332 (395)
T ss_pred CCcc-cCccc--ccCCcCCCH-HHHHHHhcCCC------cccCCchHHHHHHHHHH--HHHHHhhcccCC--CCEEEEEe
Confidence 0000 00000 000000000 00111111000 00000001111111111 012234455665 99999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhCC-CCeeEEEecCCCcccccc-ChhHHHHHHHHhhhc
Q 045335 280 ERSLHRWALEDIQRIHAAEELAVDGG-GGVEMHVLEDAGHWVHAD-NPDGLFRILTSSFEG 338 (339)
Q Consensus 280 ~~d~~~~g~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 338 (339)
++| .+++++..++++++.. ++.+++++|+++|.+++| .++++.+.|.+||+.
T Consensus 333 ~~D-------~vvp~~~a~~l~~~~~~~~k~l~~~~ga~H~l~~e~~~e~v~~~I~~FL~~ 386 (395)
T PLN02652 333 TAD-------RVTDPLASQDLYNEAASRHKDIKLYDGFLHDLLFEPEREEVGRDIIDWMEK 386 (395)
T ss_pred CCC-------CCCCHHHHHHHHHhcCCCCceEEEECCCeEEeccCCCHHHHHHHHHHHHHH
Confidence 987 5778888888877642 357899999999999887 799999999999974
No 41
>PRK05855 short chain dehydrogenase; Validated
Probab=99.94 E-value=7.2e-26 Score=212.64 Aligned_cols=119 Identities=20% Similarity=0.209 Sum_probs=97.6
Q ss_pred eeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC----CCCHHH
Q 045335 46 LAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG----LTTVAS 121 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~----~~~~~~ 121 (339)
..+...+|..++|..+|. +++|+|||+||++++...|..+++.|.+ +|+|+++|+||||.|..+ .+++++
T Consensus 5 ~~~~~~~g~~l~~~~~g~---~~~~~ivllHG~~~~~~~w~~~~~~L~~---~~~Vi~~D~~G~G~S~~~~~~~~~~~~~ 78 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGD---PDRPTVVLVHGYPDNHEVWDGVAPLLAD---RFRVVAYDVRGAGRSSAPKRTAAYTLAR 78 (582)
T ss_pred EEEEeeCCEEEEEEEcCC---CCCCeEEEEcCCCchHHHHHHHHHHhhc---ceEEEEecCCCCCCCCCCCcccccCHHH
Confidence 455677999999999875 2478999999999999999999999965 469999999999999643 378999
Q ss_pred HHHHHHHHHHHcCCCc-eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEe
Q 045335 122 TALDVLKLVAQLRITP-RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLD 171 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~-~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~ 171 (339)
+++|+.+++++++.++ ++|+||||||.+++.++.+ |+...++..++.++
T Consensus 79 ~a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~-~~~~~~v~~~~~~~ 128 (582)
T PRK05855 79 LADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTR-PRAAGRIASFTSVS 128 (582)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhC-ccchhhhhhheecc
Confidence 9999999999998765 9999999999999988876 43222444444443
No 42
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=99.93 E-value=1.1e-24 Score=190.97 Aligned_cols=270 Identities=10% Similarity=0.058 Sum_probs=165.1
Q ss_pred eeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhh-------------HHHHHH---HHHHhCCCceEEEEeeCCCCCCC
Q 045335 50 LIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKN-------------WGTFAR---RLARAYPTWQTCDVMVIPHQSRK 113 (339)
Q Consensus 50 ~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~-------------~~~~~~---~L~~~~~g~~vi~~D~~G~G~S~ 113 (339)
++...++.|+.+|..+....+.||++|++.++... |..++- .|-.. .|.||++|..|-|.|.
T Consensus 37 ~l~~~~~~Y~t~G~ln~~~~n~vlv~h~~tg~~h~~~~~~~~~~~~gww~~~iG~g~~lDt~--~yfvi~~n~lG~~~~~ 114 (389)
T PRK06765 37 TIPDVQMGYETYGTLNRAKSNVILITHYFSATSHAAGKYTADDEESGYWDGLIGPGKAIDTN--KYFVISTDTLCNVQVK 114 (389)
T ss_pred CcCCceEEEEeccccCCCCCCEEEEeCCCCCchhhcccccccCCCcccHHhccCCCCCcCCC--ceEEEEecccCCCcCC
Confidence 44677899999998665667899999999986421 655542 23222 4799999999876421
Q ss_pred -----------------------CCCCCHHHHHHHHHHHHHHcCCCceE-EEEEchhHHHHHHHHHHccCCCCCCceEEE
Q 045335 114 -----------------------GGLTTVASTALDVLKLVAQLRITPRV-LVGHSFGGKVVLSMVEQAAKPLARPVRVWV 169 (339)
Q Consensus 114 -----------------------~~~~~~~~~a~dl~~~l~~l~~~~~~-lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~ 169 (339)
-+.++++++++++.++++++++++++ +|||||||++++++|.++|+ +|.++|+
T Consensus 115 ~p~~g~tgp~s~~p~tg~~~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~---~v~~lv~ 191 (389)
T PRK06765 115 DPNVITTGPASINPKTGKPYGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPH---MVERMIG 191 (389)
T ss_pred CCCCCCCCCCCCCcCCCCccCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChH---hhheEEE
Confidence 12379999999999999999999986 99999999999999999999 7889999
Q ss_pred EeccCCCCcCCCCCCCChHHHHHHhhcCCc----ccc---Ch-H--HHHHHH-HHcCCchHHHHHHHHhccCCCCCCCC-
Q 045335 170 LDATPGKVRAGGDGEDHPAELIHFLSKLPK----EVI---SK-Q--EVVNAL-IQQGFSKDVAQWVVTNLKPAASFGAS- 237 (339)
Q Consensus 170 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~-~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~- 237 (339)
+++++....... ..........+...+. .+. .. . .....+ ......+. ++...+.........
T Consensus 192 ia~~~~~~~~~~--~~~~~~~~~ai~~dp~~~~G~y~~~~~p~~Gl~~a~~~~~~~~~s~~---~~~~~f~r~~~~~~~~ 266 (389)
T PRK06765 192 VIGNPQNDAWTS--VNVLQNWAEAIRLDPNWKGGKYYGEEQPMKGLTLALRMMTMNAFDEH---FYETTFPRNASIEVDP 266 (389)
T ss_pred EecCCCCChhHH--HHHHHHHHHHHHhCCCCCCCCCCCCCCchHHHHHHHHHHHHHcCCHH---HHHHHcCcCccccccc
Confidence 987654321100 0000111111111111 000 00 0 011111 01111111 111111110000000
Q ss_pred ------------------CCccceechHHHHHHHhhhhhh-------hhhhhhhcCCCCceeeEEeccchhhhhhhhhHH
Q 045335 238 ------------------SSFSWVFDLEGIAEMYQSYDET-------NLWKLVENLPQGVHVNFLKAERSLHRWALEDIQ 292 (339)
Q Consensus 238 ------------------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~ 292 (339)
..+.-.++...+......+... ++.+.+..++ +|+++|.|+.| .++
T Consensus 267 ~~~~~~~~~~e~yl~~~~~~~~~~~Dan~~l~l~~a~~~~d~g~~~~dl~~~L~~I~--~PtLvI~G~~D-------~l~ 337 (389)
T PRK06765 267 YEKVSTLTSFEKEINKATYRRAELVDANHWLYLAKAVQLFDAGHGFSSLEEALSNIE--ANVLMIPCKQD-------LLQ 337 (389)
T ss_pred cccccchhhHHHHHHHHHHHhhhccChhhHHHHHHHHHhcCCccccCCHHHHHhcCC--CCEEEEEeCCC-------CCC
Confidence 0001122223333333333222 3456677777 99999999997 456
Q ss_pred HHHHHHHHHHhCC---CCeeEEEecC-CCccccccChhHHHHHHHHhhhc
Q 045335 293 RIHAAEELAVDGG---GGVEMHVLED-AGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 293 ~~~~~~~~~~~~~---~~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
++...+++.+.+. ++++++++++ +||++++|+|++|++.|.+||++
T Consensus 338 p~~~~~~la~~lp~~~~~a~l~~I~s~~GH~~~le~p~~~~~~I~~FL~~ 387 (389)
T PRK06765 338 PPRYNYKMVDILQKQGKYAEVYEIESINGHMAGVFDIHLFEKKIYEFLNR 387 (389)
T ss_pred CHHHHHHHHHHhhhcCCCeEEEEECCCCCcchhhcCHHHHHHHHHHHHcc
Confidence 7776776666531 3799999986 99999999999999999999964
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=99.93 E-value=3.2e-24 Score=181.90 Aligned_cols=265 Identities=14% Similarity=0.154 Sum_probs=165.8
Q ss_pred CcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCC-CC---CCC
Q 045335 43 SGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRK-GG---LTT 118 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~-~~---~~~ 118 (339)
.....+...||..++|..+....++ ..+||++||++.+..-|..++..|... ||.|+++|+||||.|. .. ..+
T Consensus 9 ~~~~~~~~~d~~~~~~~~~~~~~~~-~g~Vvl~HG~~Eh~~ry~~la~~l~~~--G~~V~~~D~RGhG~S~r~~rg~~~~ 85 (298)
T COG2267 9 RTEGYFTGADGTRLRYRTWAAPEPP-KGVVVLVHGLGEHSGRYEELADDLAAR--GFDVYALDLRGHGRSPRGQRGHVDS 85 (298)
T ss_pred cccceeecCCCceEEEEeecCCCCC-CcEEEEecCchHHHHHHHHHHHHHHhC--CCEEEEecCCCCCCCCCCCcCCchh
Confidence 3456678889999999998764422 378999999999999999999999998 9999999999999996 22 246
Q ss_pred HHHHHHHHHHHHHHcCC----CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHh
Q 045335 119 VASTALDVLKLVAQLRI----TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFL 194 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~----~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (339)
++++.+|+..+++.... .+++|+||||||.|++.++.+++. ++.++|+.++...... ...........
T Consensus 86 f~~~~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~---~i~~~vLssP~~~l~~-----~~~~~~~~~~~ 157 (298)
T COG2267 86 FADYVDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPP---RIDGLVLSSPALGLGG-----AILRLILARLA 157 (298)
T ss_pred HHHHHHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCc---cccEEEEECccccCCh-----hHHHHHHHHHh
Confidence 89999999999988753 689999999999999999999997 7778888876543332 00011111111
Q ss_pred hc----CCccccChHHHHHHHHHcCCchHHH--HHHHHhccCCCC-CCCCCCccceechHHHHHHHhhhhhhhhhhhhhc
Q 045335 195 SK----LPKEVISKQEVVNALIQQGFSKDVA--QWVVTNLKPAAS-FGASSSFSWVFDLEGIAEMYQSYDETNLWKLVEN 267 (339)
Q Consensus 195 ~~----~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (339)
.. +...+..... . .......... ....+....... ........| +........ .......
T Consensus 158 ~~~~~~~~p~~~~~~~--~--~~~~~~~~~sr~~~~~~~~~~dP~~~~~~~~~~w------~~~~~~a~~-~~~~~~~-- 224 (298)
T COG2267 158 LKLLGRIRPKLPVDSN--L--LEGVLTDDLSRDPAEVAAYEADPLIGVGGPVSRW------VDLALLAGR-VPALRDA-- 224 (298)
T ss_pred cccccccccccccCcc--c--ccCcCcchhhcCHHHHHHHhcCCccccCCccHHH------HHHHHHhhc-ccchhcc--
Confidence 11 1111110000 0 0000000000 011111111110 000111111 111111111 1111222
Q ss_pred CCCCceeeEEeccchhhhhhhhhHHH-HHHHHHHHHh-CCCCeeEEEecCCCccccccC-h--hHHHHHHHHhhhc
Q 045335 268 LPQGVHVNFLKAERSLHRWALEDIQR-IHAAEELAVD-GGGGVEMHVLEDAGHWVHADN-P--DGLFRILTSSFEG 338 (339)
Q Consensus 268 ~~~~~pvl~i~g~~d~~~~g~~d~~~-~~~~~~~~~~-~~~~~~~~~i~~~gH~~~~e~-p--~~~~~~i~~fl~~ 338 (339)
....+|+|+++|+.|. ++. .+...++.++ -.++.++++++|+.|.++.|. . +++.+.+.+|+.+
T Consensus 225 ~~~~~PvLll~g~~D~-------vv~~~~~~~~~~~~~~~~~~~~~~~~g~~He~~~E~~~~r~~~~~~~~~~l~~ 293 (298)
T COG2267 225 PAIALPVLLLQGGDDR-------VVDNVEGLARFFERAGSPDKELKVIPGAYHELLNEPDRAREEVLKDILAWLAE 293 (298)
T ss_pred ccccCCEEEEecCCCc-------cccCcHHHHHHHHhcCCCCceEEecCCcchhhhcCcchHHHHHHHHHHHHHHh
Confidence 2334999999999884 444 4555555444 357889999999999999886 4 7899999999864
No 44
>KOG2984 consensus Predicted hydrolase [General function prediction only]
Probab=99.92 E-value=1.5e-25 Score=169.15 Aligned_cols=247 Identities=12% Similarity=0.103 Sum_probs=163.8
Q ss_pred ceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCC--C---
Q 045335 45 VLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLT--T--- 118 (339)
Q Consensus 45 ~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~--~--- 118 (339)
+-+-+.++|+++.|..+|. +...|++++|..++. ..|.+++..|.+.. .+.|+++|.||||.|.++.. .
T Consensus 22 te~kv~vng~ql~y~~~G~----G~~~iLlipGalGs~~tDf~pql~~l~k~l-~~TivawDPpGYG~SrPP~Rkf~~~f 96 (277)
T KOG2984|consen 22 TESKVHVNGTQLGYCKYGH----GPNYILLIPGALGSYKTDFPPQLLSLFKPL-QVTIVAWDPPGYGTSRPPERKFEVQF 96 (277)
T ss_pred hhheeeecCceeeeeecCC----CCceeEecccccccccccCCHHHHhcCCCC-ceEEEEECCCCCCCCCCCcccchHHH
Confidence 3445778999999999998 456899999987765 68888888777665 47999999999999966653 2
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCC
Q 045335 119 VASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLP 198 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (339)
...-+++...+|++|+.+++.++|||=||..|+..|+++++ .|.++++.++........ ...++.++...
T Consensus 97 f~~Da~~avdLM~aLk~~~fsvlGWSdGgiTalivAak~~e---~v~rmiiwga~ayvn~~~-------~ma~kgiRdv~ 166 (277)
T KOG2984|consen 97 FMKDAEYAVDLMEALKLEPFSVLGWSDGGITALIVAAKGKE---KVNRMIIWGAAAYVNHLG-------AMAFKGIRDVN 166 (277)
T ss_pred HHHhHHHHHHHHHHhCCCCeeEeeecCCCeEEEEeeccChh---hhhhheeecccceecchh-------HHHHhchHHHh
Confidence 34557888899999999999999999999999999999999 777998887654322111 11111111111
Q ss_pred ccccChHH-HHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEE
Q 045335 199 KEVISKQE-VVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFL 277 (339)
Q Consensus 199 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i 277 (339)
.......+ +...+....+...+.+| .+.+......-...-.+..+++++ ||++++
T Consensus 167 kWs~r~R~P~e~~Yg~e~f~~~wa~w----------------------vD~v~qf~~~~dG~fCr~~lp~vk--cPtli~ 222 (277)
T KOG2984|consen 167 KWSARGRQPYEDHYGPETFRTQWAAW----------------------VDVVDQFHSFCDGRFCRLVLPQVK--CPTLIM 222 (277)
T ss_pred hhhhhhcchHHHhcCHHHHHHHHHHH----------------------HHHHHHHhhcCCCchHhhhccccc--CCeeEe
Confidence 10000000 01111001111111111 122222222222223455666676 999999
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 278 KAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 278 ~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+|++|..+ ..... -+...+.+.+++.++|.++|.+|+..+++|+..+.+||++
T Consensus 223 hG~kDp~~-------~~~hv-~fi~~~~~~a~~~~~peGkHn~hLrya~eFnklv~dFl~~ 275 (277)
T KOG2984|consen 223 HGGKDPFC-------GDPHV-CFIPVLKSLAKVEIHPEGKHNFHLRYAKEFNKLVLDFLKS 275 (277)
T ss_pred eCCcCCCC-------CCCCc-cchhhhcccceEEEccCCCcceeeechHHHHHHHHHHHhc
Confidence 99998543 22211 2222235889999999999999999999999999999975
No 45
>KOG2564 consensus Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=99.92 E-value=1e-24 Score=172.99 Aligned_cols=246 Identities=21% Similarity=0.294 Sum_probs=171.2
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCC---CCCCCHHHHHHHHHHHHHHc---CCCceE
Q 045335 66 IPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRK---GGLTTVASTALDVLKLVAQL---RITPRV 139 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~---~~~~~~~~~a~dl~~~l~~l---~~~~~~ 139 (339)
.+.+|.++++||.+.++-.|..+...|.... ..+|+++|+||||.|. ..+.+.+.++.|+.++++.+ ...+++
T Consensus 71 ~t~gpil~l~HG~G~S~LSfA~~a~el~s~~-~~r~~a~DlRgHGeTk~~~e~dlS~eT~~KD~~~~i~~~fge~~~~ii 149 (343)
T KOG2564|consen 71 ATEGPILLLLHGGGSSALSFAIFASELKSKI-RCRCLALDLRGHGETKVENEDDLSLETMSKDFGAVIKELFGELPPQII 149 (343)
T ss_pred CCCccEEEEeecCcccchhHHHHHHHHHhhc-ceeEEEeeccccCccccCChhhcCHHHHHHHHHHHHHHHhccCCCceE
Confidence 4579999999999999999999999998876 5689999999999983 34589999999999999987 346799
Q ss_pred EEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchH
Q 045335 140 LVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKD 219 (339)
Q Consensus 140 lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (339)
||||||||.||.+.|... .+..+.++++++...+... .....+..+++..|..+.+.+....+-.+.+....
T Consensus 150 lVGHSmGGaIav~~a~~k--~lpsl~Gl~viDVVEgtAm------eAL~~m~~fL~~rP~~F~Si~~Ai~W~v~sg~~Rn 221 (343)
T KOG2564|consen 150 LVGHSMGGAIAVHTAASK--TLPSLAGLVVIDVVEGTAM------EALNSMQHFLRNRPKSFKSIEDAIEWHVRSGQLRN 221 (343)
T ss_pred EEeccccchhhhhhhhhh--hchhhhceEEEEEechHHH------HHHHHHHHHHhcCCccccchhhHHHHHhccccccc
Confidence 999999999999888643 1225778999987643221 12345567788888888888877777665433222
Q ss_pred HHH---HHHHhccCCCCCCCC-CCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHH
Q 045335 220 VAQ---WVVTNLKPAASFGAS-SSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIH 295 (339)
Q Consensus 220 ~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~ 295 (339)
... -+...+.... . ..+.|+.++.....+...+.. .+...+- .+++|-++|.+..|.. .+|+..-
T Consensus 222 ~~SArVsmP~~~~~~~----eGh~yvwrtdL~kte~YW~gWF~-gLS~~Fl--~~p~~klLilAg~d~L---DkdLtiG- 290 (343)
T KOG2564|consen 222 RDSARVSMPSQLKQCE----EGHCYVWRTDLEKTEQYWKGWFK-GLSDKFL--GLPVPKLLILAGVDRL---DKDLTIG- 290 (343)
T ss_pred cccceEecchheeecc----CCCcEEEEeeccccchhHHHHHh-hhhhHhh--CCCccceeEEeccccc---Ccceeee-
Confidence 111 1222222222 2 378898888877776665533 1122232 3347766665544311 0111111
Q ss_pred HHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 296 AAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 296 ~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
++ ...-++.+++.+||++|.+.|..+++.+..|+..
T Consensus 291 ---QM----QGk~Q~~vL~~~GH~v~ED~P~kva~~~~~f~~R 326 (343)
T KOG2564|consen 291 ---QM----QGKFQLQVLPLCGHFVHEDSPHKVAECLCVFWIR 326 (343)
T ss_pred ---ee----ccceeeeeecccCceeccCCcchHHHHHHHHHhh
Confidence 11 2357899999999999999999999999999853
No 46
>PLN02511 hydrolase
Probab=99.92 E-value=5.5e-24 Score=188.13 Aligned_cols=260 Identities=15% Similarity=0.148 Sum_probs=146.4
Q ss_pred eEEeeeCeeEEE--eec-cCCCCCCCCeEEEEcCCCCChh-hH-HHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCH
Q 045335 47 AYDLIQGTLVRW--SSM-MDKSIPDPPTAVLLHGILGSRK-NW-GTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTV 119 (339)
Q Consensus 47 ~~~~~~g~~l~~--~~~-g~~~~~~~~~vv~lHG~~~~~~-~~-~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~ 119 (339)
...+.||..+.+ ... ....+.++|+||++||++++.. .| ..++..+.+. ||+|+++|+||||.|+.. ....
T Consensus 75 ~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~~~~~~~~~~--g~~vv~~d~rG~G~s~~~~~~~~~ 152 (388)
T PLN02511 75 CLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVRHMLLRARSK--GWRVVVFNSRGCADSPVTTPQFYS 152 (388)
T ss_pred EEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC--CCEEEEEecCCCCCCCCCCcCEEc
Confidence 344557777664 221 1112345789999999987654 35 4566666665 789999999999999532 2334
Q ss_pred HHHHHHHHHHHHHcCC----CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCC-CCCCChHHHHHHh
Q 045335 120 ASTALDVLKLVAQLRI----TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGG-DGEDHPAELIHFL 194 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~----~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~-~~~~~~~~~~~~~ 194 (339)
..+++|+.++++.++. .+++++||||||.+++.++.++|+.. .|.++++++++........ ............+
T Consensus 153 ~~~~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~-~v~~~v~is~p~~l~~~~~~~~~~~~~~y~~~~ 231 (388)
T PLN02511 153 ASFTGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENC-PLSGAVSLCNPFDLVIADEDFHKGFNNVYDKAL 231 (388)
T ss_pred CCchHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCC-CceEEEEECCCcCHHHHHHHHhccHHHHHHHHH
Confidence 5677888888888765 58999999999999999999999842 3678877755432100000 0000000000000
Q ss_pred h-cCCccccChHHHHHHHHHc---CCc-------hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhh
Q 045335 195 S-KLPKEVISKQEVVNALIQQ---GFS-------KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWK 263 (339)
Q Consensus 195 ~-~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (339)
. .+.. .. ......... .+. ..+.++. +.+.... ........++ ...+...
T Consensus 232 ~~~l~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~fd-~~~t~~~-----------~gf~~~~~yy---~~~s~~~ 292 (388)
T PLN02511 232 AKALRK-IF---AKHALLFEGLGGEYNIPLVANAKTVRDFD-DGLTRVS-----------FGFKSVDAYY---SNSSSSD 292 (388)
T ss_pred HHHHHH-HH---HHHHHHHhhCCCccCHHHHHhCCCHHHHH-Hhhhhhc-----------CCCCCHHHHH---HHcCchh
Confidence 0 0000 00 000000000 000 0000000 0000000 0000011111 1122334
Q ss_pred hhhcCCCCceeeEEeccchhhhhhhhhHHHHHHH-HHHHHhCCCCeeEEEecCCCccccccChhH------HHHHHHHhh
Q 045335 264 LVENLPQGVHVNFLKAERSLHRWALEDIQRIHAA-EELAVDGGGGVEMHVLEDAGHWVHADNPDG------LFRILTSSF 336 (339)
Q Consensus 264 ~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~-~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~------~~~~i~~fl 336 (339)
.+.++. +|+|+|+|++|. +++.... ...++ ..|++++++++++||..++|+|+. +.+.|.+||
T Consensus 293 ~L~~I~--vPtLiI~g~dDp-------i~p~~~~~~~~~~-~~p~~~l~~~~~gGH~~~~E~p~~~~~~~w~~~~i~~Fl 362 (388)
T PLN02511 293 SIKHVR--VPLLCIQAANDP-------IAPARGIPREDIK-ANPNCLLIVTPSGGHLGWVAGPEAPFGAPWTDPVVMEFL 362 (388)
T ss_pred hhccCC--CCeEEEEcCCCC-------cCCcccCcHhHHh-cCCCEEEEECCCcceeccccCCCCCCCCccHHHHHHHHH
Confidence 566666 999999999984 4444433 23333 369999999999999999999986 589999998
Q ss_pred hc
Q 045335 337 EG 338 (339)
Q Consensus 337 ~~ 338 (339)
+.
T Consensus 363 ~~ 364 (388)
T PLN02511 363 EA 364 (388)
T ss_pred HH
Confidence 64
No 47
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=99.91 E-value=5.6e-23 Score=178.24 Aligned_cols=263 Identities=15% Similarity=0.217 Sum_probs=157.5
Q ss_pred EeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh-hH-------------------------HHHHHHHHHhCCCceEE
Q 045335 49 DLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK-NW-------------------------GTFARRLARAYPTWQTC 102 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~-~~-------------------------~~~~~~L~~~~~g~~vi 102 (339)
...||..|+++.+.+. ..+.+|+++||++.... .| ..+++.|.+. ||+|+
T Consensus 3 ~~~~g~~l~~~~~~~~--~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~~~l~~~--G~~V~ 78 (332)
T TIGR01607 3 RNKDGLLLKTYSWIVK--NAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWIENFNKN--GYSVY 78 (332)
T ss_pred cCCCCCeEEEeeeecc--CCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHHHHHHHC--CCcEE
Confidence 4558888888887653 23568999999998875 22 3578889887 89999
Q ss_pred EEeeCCCCCCCCC----C--CCHHHHHHHHHHHHHHcC------------------------CCceEEEEEchhHHHHHH
Q 045335 103 DVMVIPHQSRKGG----L--TTVASTALDVLKLVAQLR------------------------ITPRVLVGHSFGGKVVLS 152 (339)
Q Consensus 103 ~~D~~G~G~S~~~----~--~~~~~~a~dl~~~l~~l~------------------------~~~~~lvGhS~Gg~ia~~ 152 (339)
++|+||||.|... . .+++++++|+.++++... ..|++|+||||||.+++.
T Consensus 79 ~~D~rGHG~S~~~~~~~g~~~~~~~~v~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~ 158 (332)
T TIGR01607 79 GLDLQGHGESDGLQNLRGHINCFDDLVYDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALR 158 (332)
T ss_pred EecccccCCCccccccccchhhHHHHHHHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHH
Confidence 9999999998632 1 379999999999998642 247899999999999999
Q ss_pred HHHHccCCC-----CCCceEEEEeccCCCCcCCCC----CCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHH
Q 045335 153 MVEQAAKPL-----ARPVRVWVLDATPGKVRAGGD----GEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQW 223 (339)
Q Consensus 153 ~a~~~p~~~-----~~v~~lv~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (339)
++.++++.. ..+.++|++++.......... .......+...+........... ...... ...
T Consensus 159 ~~~~~~~~~~~~~~~~i~g~i~~s~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~-------~~~~~~--~~~ 229 (332)
T TIGR01607 159 LLELLGKSNENNDKLNIKGCISLSGMISIKSVGSDDSFKFKYFYLPVMNFMSRVFPTFRISK-------KIRYEK--SPY 229 (332)
T ss_pred HHHHhccccccccccccceEEEeccceEEecccCCCcchhhhhHHHHHHHHHHHCCcccccC-------cccccc--Chh
Confidence 998765421 135677666654321110000 00001111111111111000000 000000 000
Q ss_pred HHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHh
Q 045335 224 VVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVD 303 (339)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~ 303 (339)
..+...... -.+...........++..... ....+..++..+|+|+++|+.| .+++++...++.++
T Consensus 230 ~~~~~~~Dp-----~~~~~~~s~~~~~~l~~~~~~--~~~~~~~i~~~~P~Lii~G~~D-------~vv~~~~~~~~~~~ 295 (332)
T TIGR01607 230 VNDIIKFDK-----FRYDGGITFNLASELIKATDT--LDCDIDYIPKDIPILFIHSKGD-------CVCSYEGTVSFYNK 295 (332)
T ss_pred hhhHHhcCc-----cccCCcccHHHHHHHHHHHHH--HHhhHhhCCCCCCEEEEEeCCC-------CccCHHHHHHHHHh
Confidence 111111100 000011122333333332211 1223445544589999999998 56677777777665
Q ss_pred C-CCCeeEEEecCCCccccccC-hhHHHHHHHHhhhc
Q 045335 304 G-GGGVEMHVLEDAGHWVHADN-PDGLFRILTSSFEG 338 (339)
Q Consensus 304 ~-~~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 338 (339)
. .++.+++++++++|.++.|. ++++.+.|.+||+.
T Consensus 296 ~~~~~~~l~~~~g~~H~i~~E~~~~~v~~~i~~wL~~ 332 (332)
T TIGR01607 296 LSISNKELHTLEDMDHVITIEPGNEEVLKKIIEWISN 332 (332)
T ss_pred ccCCCcEEEEECCCCCCCccCCCHHHHHHHHHHHhhC
Confidence 3 36789999999999999985 78999999999863
No 48
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=99.90 E-value=4.5e-21 Score=162.19 Aligned_cols=233 Identities=14% Similarity=0.074 Sum_probs=137.2
Q ss_pred CCCeEEEEcCCCC----ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc-----CCCce
Q 045335 68 DPPTAVLLHGILG----SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL-----RITPR 138 (339)
Q Consensus 68 ~~~~vv~lHG~~~----~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l-----~~~~~ 138 (339)
.+++||++||++. +...|..+++.|++. ||+|+++|+||||.|.....+++++.+|+.++++.+ +.+++
T Consensus 25 ~~~~vv~i~gg~~~~~g~~~~~~~la~~l~~~--G~~v~~~Dl~G~G~S~~~~~~~~~~~~d~~~~~~~l~~~~~g~~~i 102 (274)
T TIGR03100 25 HTTGVLIVVGGPQYRVGSHRQFVLLARRLAEA--GFPVLRFDYRGMGDSEGENLGFEGIDADIAAAIDAFREAAPHLRRI 102 (274)
T ss_pred CCCeEEEEeCCccccCCchhHHHHHHHHHHHC--CCEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCCcE
Confidence 4678888888763 344567778889887 889999999999999766678888889988888877 55779
Q ss_pred EEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCc-
Q 045335 139 VLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFS- 217 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (339)
+++|||+||.+++.+|.. ++ +|.++|++++....... ............. ... ......+......
T Consensus 103 ~l~G~S~Gg~~a~~~a~~-~~---~v~~lil~~p~~~~~~~-----~~~~~~~~~~~~~---~~~-~~~~~~~~~g~~~~ 169 (274)
T TIGR03100 103 VAWGLCDAASAALLYAPA-DL---RVAGLVLLNPWVRTEAA-----QAASRIRHYYLGQ---LLS-ADFWRKLLSGEVNL 169 (274)
T ss_pred EEEEECHHHHHHHHHhhh-CC---CccEEEEECCccCCccc-----chHHHHHHHHHHH---HhC-hHHHHHhcCCCccH
Confidence 999999999999999765 44 77799888754211110 0011110110000 000 0111111111110
Q ss_pred hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHH-
Q 045335 218 KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHA- 296 (339)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~- 296 (339)
......+...+...... ..... ... ...+....+..++ +|++++.|++|.. .+...
T Consensus 170 ~~~~~~~~~~~~~~~~~---~~~~~---~~~--------~~~~~~~~l~~~~--~P~ll~~g~~D~~-------~~~~~~ 226 (274)
T TIGR03100 170 GSSLRGLGDALLKARQK---GDEVA---HGG--------LAERMKAGLERFQ--GPVLFILSGNDLT-------AQEFAD 226 (274)
T ss_pred HHHHHHHHHHHHhhhhc---CCCcc---cch--------HHHHHHHHHHhcC--CcEEEEEcCcchh-------HHHHHH
Confidence 00011111111000000 00000 000 1223344555565 9999999999843 21110
Q ss_pred ----HHHHHHhC-CCCeeEEEecCCCccccccC-hhHHHHHHHHhhhc
Q 045335 297 ----AEELAVDG-GGGVEMHVLEDAGHWVHADN-PDGLFRILTSSFEG 338 (339)
Q Consensus 297 ----~~~~~~~~-~~~~~~~~i~~~gH~~~~e~-p~~~~~~i~~fl~~ 338 (339)
..++.+.+ .++++++.++++||++..|. ++++.+.|.+||+.
T Consensus 227 ~~~~~~~~~~~l~~~~v~~~~~~~~~H~l~~e~~~~~v~~~i~~wL~~ 274 (274)
T TIGR03100 227 SVLGEPAWRGALEDPGIERVEIDGADHTFSDRVWREWVAARTTEWLRR 274 (274)
T ss_pred HhccChhhHHHhhcCCeEEEecCCCCcccccHHHHHHHHHHHHHHHhC
Confidence 03333322 28999999999999996665 59999999999963
No 49
>COG1647 Esterase/lipase [General function prediction only]
Probab=99.89 E-value=7.9e-22 Score=151.90 Aligned_cols=222 Identities=15% Similarity=0.138 Sum_probs=147.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC--CCCCHHHHHHHHHHHHHHc---CCCceEEEEE
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG--GLTTVASTALDVLKLVAQL---RITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--~~~~~~~~a~dl~~~l~~l---~~~~~~lvGh 143 (339)
+.+||||||+.++....+.+.+.|.++ ||.|.+|.+||||.... -..+.+++-+++.+..+.| +.+.+.++|.
T Consensus 15 ~~AVLllHGFTGt~~Dvr~Lgr~L~e~--GyTv~aP~ypGHG~~~e~fl~t~~~DW~~~v~d~Y~~L~~~gy~eI~v~Gl 92 (243)
T COG1647 15 NRAVLLLHGFTGTPRDVRMLGRYLNEN--GYTVYAPRYPGHGTLPEDFLKTTPRDWWEDVEDGYRDLKEAGYDEIAVVGL 92 (243)
T ss_pred CEEEEEEeccCCCcHHHHHHHHHHHHC--CceEecCCCCCCCCCHHHHhcCCHHHHHHHHHHHHHHHHHcCCCeEEEEee
Confidence 589999999999999999999999998 99999999999998843 2467777766666655554 6689999999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHH
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQW 223 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (339)
||||.+++.+|.++| +++++.++++....... .....+..+.+..+... ....+...+.
T Consensus 93 SmGGv~alkla~~~p-----~K~iv~m~a~~~~k~~~----~iie~~l~y~~~~kk~e------------~k~~e~~~~e 151 (243)
T COG1647 93 SMGGVFALKLAYHYP-----PKKIVPMCAPVNVKSWR----IIIEGLLEYFRNAKKYE------------GKDQEQIDKE 151 (243)
T ss_pred cchhHHHHHHHhhCC-----ccceeeecCCcccccch----hhhHHHHHHHHHhhhcc------------CCCHHHHHHH
Confidence 999999999999996 34777776653322211 01122222222111100 0111111111
Q ss_pred HHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHh
Q 045335 224 VVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVD 303 (339)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~ 303 (339)
+... .... ...+......+. +....+..|. .|++++.|++| ++++.+.+..+.+.
T Consensus 152 ~~~~-~~~~-------------~~~~~~~~~~i~--~~~~~~~~I~--~pt~vvq~~~D-------~mv~~~sA~~Iy~~ 206 (243)
T COG1647 152 MKSY-KDTP-------------MTTTAQLKKLIK--DARRSLDKIY--SPTLVVQGRQD-------EMVPAESANFIYDH 206 (243)
T ss_pred HHHh-hcch-------------HHHHHHHHHHHH--HHHhhhhhcc--cchhheecccC-------CCCCHHHHHHHHHh
Confidence 1111 1000 111111111111 2234455666 89999999998 67888888877776
Q ss_pred CCC-CeeEEEecCCCcccccc-ChhHHHHHHHHhhhc
Q 045335 304 GGG-GVEMHVLEDAGHWVHAD-NPDGLFRILTSSFEG 338 (339)
Q Consensus 304 ~~~-~~~~~~i~~~gH~~~~e-~p~~~~~~i~~fl~~ 338 (339)
..+ +-++..++++||.+-.+ .-+++.+.|..||++
T Consensus 207 v~s~~KeL~~~e~SgHVIt~D~Erd~v~e~V~~FL~~ 243 (243)
T COG1647 207 VESDDKELKWLEGSGHVITLDKERDQVEEDVITFLEK 243 (243)
T ss_pred ccCCcceeEEEccCCceeecchhHHHHHHHHHHHhhC
Confidence 543 46999999999999875 478999999999974
No 50
>KOG1455 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=99.89 E-value=2.2e-21 Score=157.08 Aligned_cols=264 Identities=15% Similarity=0.142 Sum_probs=169.4
Q ss_pred eeEEeeeCeeEEEeeccCCCC-CCCCeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC---CCHH
Q 045335 46 LAYDLIQGTLVRWSSMMDKSI-PDPPTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL---TTVA 120 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~-~~~~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~---~~~~ 120 (339)
..++..+|..++++.+-+... ..+-.|+++||++... ..|..++..|+.. ||.|+++|++|||.|+.-. .+++
T Consensus 30 ~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~~~~~~a~~l~~~--g~~v~a~D~~GhG~SdGl~~yi~~~d 107 (313)
T KOG1455|consen 30 SFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSWRYQSTAKRLAKS--GFAVYAIDYEGHGRSDGLHAYVPSFD 107 (313)
T ss_pred eeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchhhHHHHHHHHHhC--CCeEEEeeccCCCcCCCCcccCCcHH
Confidence 446677899999998877443 3445789999999875 7888899999988 9999999999999996432 5899
Q ss_pred HHHHHHHHHHHHc------CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHh
Q 045335 121 STALDVLKLVAQL------RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFL 194 (339)
Q Consensus 121 ~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (339)
..++|+..+.+.. ...+..|.||||||+|++.++.++|+.. .++|++++......... +......+...+
T Consensus 108 ~~v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w---~G~ilvaPmc~i~~~~k-p~p~v~~~l~~l 183 (313)
T KOG1455|consen 108 LVVDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFW---DGAILVAPMCKISEDTK-PHPPVISILTLL 183 (313)
T ss_pred HHHHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCccc---ccceeeecccccCCccC-CCcHHHHHHHHH
Confidence 9999999998864 2247899999999999999999999944 47777766543332211 111223333333
Q ss_pred hcCCcccc--ChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCc
Q 045335 195 SKLPKEVI--SKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGV 272 (339)
Q Consensus 195 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (339)
..+-+.+. .......... -.+..++.+..+..... .. --.....+++. ...++.+.+.++. +
T Consensus 184 ~~liP~wk~vp~~d~~~~~~---kdp~~r~~~~~npl~y~-----g~----pRl~T~~ElLr--~~~~le~~l~~vt--v 247 (313)
T KOG1455|consen 184 SKLIPTWKIVPTKDIIDVAF---KDPEKRKILRSDPLCYT-----GK----PRLKTAYELLR--VTADLEKNLNEVT--V 247 (313)
T ss_pred HHhCCceeecCCcccccccc---CCHHHHHHhhcCCceec-----CC----ccHHHHHHHHH--HHHHHHHhccccc--c
Confidence 33221111 0000111000 01222222222211111 11 11222222222 2335556777777 9
Q ss_pred eeeEEeccchhhhhhhhhHHHHHHHHHHHHhC-CCCeeEEEecCCCccccc----cChhHHHHHHHHhhhc
Q 045335 273 HVNFLKAERSLHRWALEDIQRIHAAEELAVDG-GGGVEMHVLEDAGHWVHA----DNPDGLFRILTSSFEG 338 (339)
Q Consensus 273 pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~~----e~p~~~~~~i~~fl~~ 338 (339)
|.++++|+.| -++.+...+++.+.. -.+-++..+||.=|.++. |+-+.|...|.+||.+
T Consensus 248 PflilHG~dD-------~VTDp~~Sk~Lye~A~S~DKTlKlYpGm~H~Ll~gE~~en~e~Vf~DI~~Wl~~ 311 (313)
T KOG1455|consen 248 PFLILHGTDD-------KVTDPKVSKELYEKASSSDKTLKLYPGMWHSLLSGEPDENVEIVFGDIISWLDE 311 (313)
T ss_pred cEEEEecCCC-------cccCcHHHHHHHHhccCCCCceeccccHHHHhhcCCCchhHHHHHHHHHHHHHh
Confidence 9999999987 356666677766643 367899999999999986 3345677888888864
No 51
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=99.89 E-value=4.5e-21 Score=170.35 Aligned_cols=234 Identities=13% Similarity=0.074 Sum_probs=144.3
Q ss_pred eeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC--CCHHHH
Q 045335 46 LAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL--TTVAST 122 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~--~~~~~~ 122 (339)
+.+...+|..+.-+.+.+...+..|+||++||+.+.. ..|..+.+.|++. ||.|+++|+||+|.|.... ......
T Consensus 171 v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~~~~~La~~--Gy~vl~~D~pG~G~s~~~~~~~d~~~~ 248 (414)
T PRK05077 171 LEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRLFRDYLAPR--GIAMLTIDMPSVGFSSKWKLTQDSSLL 248 (414)
T ss_pred EEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHHHHHHHHhC--CCEEEEECCCCCCCCCCCCccccHHHH
Confidence 3344446656664443332333456677666766654 5788888999887 8999999999999995432 345555
Q ss_pred HHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCc
Q 045335 123 ALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPK 199 (339)
Q Consensus 123 a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (339)
.+++.+++... +.+++.++||||||.+++.+|..+|+ +++++|++++........ ... ....+.
T Consensus 249 ~~avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~---ri~a~V~~~~~~~~~~~~-------~~~---~~~~p~ 315 (414)
T PRK05077 249 HQAVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPP---RLKAVACLGPVVHTLLTD-------PKR---QQQVPE 315 (414)
T ss_pred HHHHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCc---CceEEEEECCccchhhcc-------hhh---hhhchH
Confidence 56676766655 55789999999999999999999998 777888876553211000 000 000000
Q ss_pred cccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhh-hcCCCCceeeEEe
Q 045335 200 EVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLV-ENLPQGVHVNFLK 278 (339)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~pvl~i~ 278 (339)
.....+ ...+.... .+...+...+..+... ....+ ..++ +|+|+|+
T Consensus 316 ------~~~~~l-------------a~~lg~~~-----------~~~~~l~~~l~~~sl~-~~~~l~~~i~--~PvLiI~ 362 (414)
T PRK05077 316 ------MYLDVL-------------ASRLGMHD-----------ASDEALRVELNRYSLK-VQGLLGRRCP--TPMLSGY 362 (414)
T ss_pred ------HHHHHH-------------HHHhCCCC-----------CChHHHHHHhhhccch-hhhhhccCCC--CcEEEEe
Confidence 000000 00000000 0011111111111000 00011 2344 8999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 279 AERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 279 g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
|++| .++|++..+.+.+. .|+.+++++|++ ++.+.++++.+.|.+||++
T Consensus 363 G~~D-------~ivP~~~a~~l~~~-~~~~~l~~i~~~---~~~e~~~~~~~~i~~wL~~ 411 (414)
T PRK05077 363 WKND-------PFSPEEDSRLIASS-SADGKLLEIPFK---PVYRNFDKALQEISDWLED 411 (414)
T ss_pred cCCC-------CCCCHHHHHHHHHh-CCCCeEEEccCC---CccCCHHHHHHHHHHHHHH
Confidence 9998 57888888877765 699999999986 6678999999999999974
No 52
>PRK10985 putative hydrolase; Provisional
Probab=99.89 E-value=9.5e-21 Score=164.28 Aligned_cols=125 Identities=16% Similarity=0.198 Sum_probs=86.4
Q ss_pred eeEEeeeCeeEEEeec-cCCCCCCCCeEEEEcCCCCChhh--HHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--C-C--
Q 045335 46 LAYDLIQGTLVRWSSM-MDKSIPDPPTAVLLHGILGSRKN--WGTFARRLARAYPTWQTCDVMVIPHQSRKGG--L-T-- 117 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~-g~~~~~~~~~vv~lHG~~~~~~~--~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~-~-- 117 (339)
-.....||..+.+.-. .+...+.+|+||++||++++... +..++..|.+. ||+|+++|+||||.++.. . +
T Consensus 34 ~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~~~~~~~l~~~--G~~v~~~d~rG~g~~~~~~~~~~~~ 111 (324)
T PRK10985 34 QRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYAHGLLEAAQKR--GWLGVVMHFRGCSGEPNRLHRIYHS 111 (324)
T ss_pred eEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHHHHHHHHHHHC--CCEEEEEeCCCCCCCccCCcceECC
Confidence 3355667776543222 12223457899999999887533 45688888887 999999999999977432 1 1
Q ss_pred -CHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 118 -TVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 118 -~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
..+|..+.+..+.++++..+++++||||||.+++.++..+++.. .+.++++++++
T Consensus 112 ~~~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~~-~~~~~v~i~~p 167 (324)
T PRK10985 112 GETEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDDL-PLDAAVIVSAP 167 (324)
T ss_pred CchHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCCC-CccEEEEEcCC
Confidence 24444444444445567778999999999999999988876521 36688888765
No 53
>PRK11071 esterase YqiA; Provisional
Probab=99.88 E-value=4.9e-21 Score=152.33 Aligned_cols=186 Identities=18% Similarity=0.179 Sum_probs=129.0
Q ss_pred CeEEEEcCCCCChhhHHH--HHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 70 PTAVLLHGILGSRKNWGT--FARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~--~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
|+|||+||++++...|.. +.+.+.+..++|+|+++|+|||| +++++++.+++++++.++++++||||||
T Consensus 2 p~illlHGf~ss~~~~~~~~~~~~l~~~~~~~~v~~~dl~g~~---------~~~~~~l~~l~~~~~~~~~~lvG~S~Gg 72 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKATLLKNWLAQHHPDIEMIVPQLPPYP---------ADAAELLESLVLEHGGDPLGLVGSSLGG 72 (190)
T ss_pred CeEEEECCCCCCcchHHHHHHHHHHHHhCCCCeEEeCCCCCCH---------HHHHHHHHHHHHHcCCCCeEEEEECHHH
Confidence 689999999999999984 44666664446799999999985 5789999999999999999999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHh
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTN 227 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (339)
.+++.+|.++|. ++++++++.... ......+.. ..
T Consensus 73 ~~a~~~a~~~~~------~~vl~~~~~~~~----------~~~~~~~~~------------------~~----------- 107 (190)
T PRK11071 73 YYATWLSQCFML------PAVVVNPAVRPF----------ELLTDYLGE------------------NE----------- 107 (190)
T ss_pred HHHHHHHHHcCC------CEEEECCCCCHH----------HHHHHhcCC------------------cc-----------
Confidence 999999999984 456776542100 111111000 00
Q ss_pred ccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCC
Q 045335 228 LKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGG 307 (339)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~ 307 (339)
.... ... +..+...+... ... .+..++.++|+++++|+.| ++++++...++.+.
T Consensus 108 -~~~~----~~~--~~~~~~~~~d~----~~~----~~~~i~~~~~v~iihg~~D-------e~V~~~~a~~~~~~---- 161 (190)
T PRK11071 108 -NPYT----GQQ--YVLESRHIYDL----KVM----QIDPLESPDLIWLLQQTGD-------EVLDYRQAVAYYAA---- 161 (190)
T ss_pred -cccC----CCc--EEEcHHHHHHH----Hhc----CCccCCChhhEEEEEeCCC-------CcCCHHHHHHHHHh----
Confidence 0000 000 11111211111 111 1222445589999999998 68899988888874
Q ss_pred eeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 308 VEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 308 ~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
++.+.++|++|.. +..+++.+.+.+|+.
T Consensus 162 ~~~~~~~ggdH~f--~~~~~~~~~i~~fl~ 189 (190)
T PRK11071 162 CRQTVEEGGNHAF--VGFERYFNQIVDFLG 189 (190)
T ss_pred cceEEECCCCcch--hhHHHhHHHHHHHhc
Confidence 5778899999988 566999999999985
No 54
>PLN02872 triacylglycerol lipase
Probab=99.86 E-value=1.5e-20 Score=164.94 Aligned_cols=276 Identities=12% Similarity=0.121 Sum_probs=158.6
Q ss_pred CCccee-EEeeeCeeEEEeeccCCC----CCCCCeEEEEcCCCCChhhHH------HHHHHHHHhCCCceEEEEeeCCCC
Q 045335 42 PSGVLA-YDLIQGTLVRWSSMMDKS----IPDPPTAVLLHGILGSRKNWG------TFARRLARAYPTWQTCDVMVIPHQ 110 (339)
Q Consensus 42 ~~~~~~-~~~~~g~~l~~~~~g~~~----~~~~~~vv~lHG~~~~~~~~~------~~~~~L~~~~~g~~vi~~D~~G~G 110 (339)
.+.+.+ ..+-||-.|..+...... ...+|+|+|+||+++++..|. .+...|++. ||+|+++|+||+|
T Consensus 42 y~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~La~~--GydV~l~n~RG~~ 119 (395)
T PLN02872 42 YSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFILADH--GFDVWVGNVRGTR 119 (395)
T ss_pred CCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHHHhC--CCCcccccccccc
Confidence 344444 456789888877764321 124689999999999998883 344567776 8999999999987
Q ss_pred CCC-------CC----CCCHHHHH-HHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 111 SRK-------GG----LTTVASTA-LDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 111 ~S~-------~~----~~~~~~~a-~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
.|. .+ .+++++++ .|+.++++.+ ..+++++||||+||.+++.++ .+|+...+|..++++++...
T Consensus 120 ~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~ 198 (395)
T PLN02872 120 WSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSITNSKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISY 198 (395)
T ss_pred cccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhccCCceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhh
Confidence 541 11 36888999 7999999876 347899999999999998544 67875545667777766533
Q ss_pred CCcCCCCCC-C----ChHHHHHHhhcCCccccChHHHHHHH------------------HHcC--CchH-----------
Q 045335 176 KVRAGGDGE-D----HPAELIHFLSKLPKEVISKQEVVNAL------------------IQQG--FSKD----------- 219 (339)
Q Consensus 176 ~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~--~~~~----------- 219 (339)
......... . ....+...+ ........ ......+ .... +...
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~-~~~~~~~~~~~C~~~~~c~~~~~~~~g~~~~~n~~~~~~~~~~~pa 276 (395)
T PLN02872 199 LDHVTAPLVLRMVFMHLDQMVVAM-GIHQLNFR-SDVLVKLLDSICEGHMDCNDLLTSITGTNCCFNASRIDYYLEYEPH 276 (395)
T ss_pred hccCCCHHHHHHHHHhHHHHHHHh-cCceecCC-cHHHHHHHHHHccCchhHHHHHHHHhCCCcccchhhhhHHHhcCCC
Confidence 221110000 0 000000000 00000000 0001100 0000 0000
Q ss_pred -----HHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHH
Q 045335 220 -----VAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRI 294 (339)
Q Consensus 220 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~ 294 (339)
....+.+....... ..+.+. ...-...+.... ...-.+++++.++|++++.|+.| +++++
T Consensus 277 gtS~k~~~H~~Q~~~s~~f----~~yDyg--~~~n~~~Yg~~~--pP~Y~l~~i~~~~Pv~i~~G~~D-------~lv~~ 341 (395)
T PLN02872 277 PSSVKNLRHLFQMIRKGTF----AHYDYG--IFKNLKLYGQVN--PPAFDLSLIPKSLPLWMGYGGTD-------GLADV 341 (395)
T ss_pred cchHHHHHHHHHHHhcCCc----ccCCCC--chhhHHHhCCCC--CCCcCcccCCCCccEEEEEcCCC-------CCCCH
Confidence 00011111111111 111111 000011111111 11123556655689999999998 56778
Q ss_pred HHHHHHHHhCCCC-eeEEEecCCCccc---cccChhHHHHHHHHhhhc
Q 045335 295 HAAEELAVDGGGG-VEMHVLEDAGHWV---HADNPDGLFRILTSSFEG 338 (339)
Q Consensus 295 ~~~~~~~~~~~~~-~~~~~i~~~gH~~---~~e~p~~~~~~i~~fl~~ 338 (339)
...+++.+.+ ++ .+++.++++||.. ..+.|+++.+.|.+||++
T Consensus 342 ~dv~~l~~~L-p~~~~l~~l~~~gH~dfi~~~eape~V~~~Il~fL~~ 388 (395)
T PLN02872 342 TDVEHTLAEL-PSKPELLYLENYGHIDFLLSTSAKEDVYNHMIQFFRS 388 (395)
T ss_pred HHHHHHHHHC-CCccEEEEcCCCCCHHHHhCcchHHHHHHHHHHHHHH
Confidence 8888888875 55 6899999999963 448899999999999974
No 55
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.86 E-value=4.5e-20 Score=166.28 Aligned_cols=271 Identities=13% Similarity=0.062 Sum_probs=158.6
Q ss_pred CccCCCCCcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHH-----HHHHHHHHhCCCceEEEEeeCCCC
Q 045335 36 GKDVAEPSGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWG-----TFARRLARAYPTWQTCDVMVIPHQ 110 (339)
Q Consensus 36 ~~~~~~~~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~-----~~~~~L~~~~~g~~vi~~D~~G~G 110 (339)
......++.+.-|..---.-++|.... ....++|||++||+......|+ .++..|.++ ||+|+++|++|+|
T Consensus 157 g~~~a~Tpg~VV~~~~~~eLi~Y~P~t--~~~~~~PlLiVp~~i~k~yilDL~p~~Slv~~L~~q--Gf~V~~iDwrgpg 232 (532)
T TIGR01838 157 GRNLATTPGAVVFENELFQLIQYEPTT--ETVHKTPLLIVPPWINKYYILDLRPQNSLVRWLVEQ--GHTVFVISWRNPD 232 (532)
T ss_pred CCCCCCCCCeEEEECCcEEEEEeCCCC--CcCCCCcEEEECcccccceeeecccchHHHHHHHHC--CcEEEEEECCCCC
Confidence 333344455555555444555553322 2225789999999998888875 789999987 8999999999999
Q ss_pred CCCCC----CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHH----HHHHHc-cCCCCCCceEEEEeccCCCCcCCC
Q 045335 111 SRKGG----LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVL----SMVEQA-AKPLARPVRVWVLDATPGKVRAGG 181 (339)
Q Consensus 111 ~S~~~----~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~----~~a~~~-p~~~~~v~~lv~l~~~~~~~~~~~ 181 (339)
.+... +|..+.+.+.+..+++.++.++++++||||||.++. .+++.+ |+ +|.+++++++..-+.....
T Consensus 233 ~s~~~~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~---rv~slvll~t~~Df~~~G~ 309 (532)
T TIGR01838 233 ASQADKTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDK---RIKSATFFTTLLDFSDPGE 309 (532)
T ss_pred cccccCChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCC---ccceEEEEecCcCCCCcch
Confidence 88542 244445566677777788999999999999999852 345555 66 6789999987754432211
Q ss_pred CCCCC----hHHHHHHhhcCCccccChHHHHHHHHHcCCchH-HHHHHHHhccCCCCCCCCCCccceec-----hHHHHH
Q 045335 182 DGEDH----PAELIHFLSKLPKEVISKQEVVNALIQQGFSKD-VAQWVVTNLKPAASFGASSSFSWVFD-----LEGIAE 251 (339)
Q Consensus 182 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 251 (339)
..... ...+...+... .......+...+.--..... +..++...+....... .....|..+ -.....
T Consensus 310 l~~f~~~~~~~~~e~~~~~~--G~lpg~~m~~~F~~lrp~~l~w~~~v~~yl~g~~~~~-fdll~Wn~D~t~lP~~~~~~ 386 (532)
T TIGR01838 310 LGVFVDEEIVAGIERQNGGG--GYLDGRQMAVTFSLLRENDLIWNYYVDNYLKGKSPVP-FDLLFWNSDSTNLPGKMHNF 386 (532)
T ss_pred hhhhcCchhHHHHHHHHHhc--CCCCHHHHHHHHHhcChhhHHHHHHHHHHhcCCCccc-hhHHHHhccCccchHHHHHH
Confidence 11000 01111111111 12222222222222112122 2223333333322111 111223222 112222
Q ss_pred HHhhhhh-----------hhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccc
Q 045335 252 MYQSYDE-----------TNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWV 320 (339)
Q Consensus 252 ~~~~~~~-----------~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~ 320 (339)
++..+.. .+....+..++ +|++++.|++| .+++......+.+. +++.+..+++++||.+
T Consensus 387 ~lr~ly~~N~L~~G~~~v~g~~~dL~~I~--vPvLvV~G~~D-------~IvP~~sa~~l~~~-i~~~~~~vL~~sGHi~ 456 (532)
T TIGR01838 387 YLRNLYLQNALTTGGLEVCGVRLDLSKVK--VPVYIIATRED-------HIAPWQSAYRGAAL-LGGPKTFVLGESGHIA 456 (532)
T ss_pred HHHHHHhcCCCcCCeeEECCEecchhhCC--CCEEEEeeCCC-------CcCCHHHHHHHHHH-CCCCEEEEECCCCCch
Confidence 2222111 11224555666 99999999998 56777777777766 6899999999999999
Q ss_pred cccChh
Q 045335 321 HADNPD 326 (339)
Q Consensus 321 ~~e~p~ 326 (339)
++++|.
T Consensus 457 ~ienPp 462 (532)
T TIGR01838 457 GVVNPP 462 (532)
T ss_pred HhhCCC
Confidence 999985
No 56
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.86 E-value=5.7e-21 Score=157.84 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=125.9
Q ss_pred ceEEEEeeCCCCCCCC------CCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 99 WQTCDVMVIPHQSRKG------GLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 99 ~~vi~~D~~G~G~S~~------~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
|+|+++|+||+|.|++ +.++.+++++++..+++.++.++++++||||||.+++.+|+.+|+ +|.+++++++
T Consensus 1 f~vi~~d~rG~g~S~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~---~v~~lvl~~~ 77 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPHWDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPE---RVKKLVLISP 77 (230)
T ss_dssp EEEEEEECTTSTTSSSCCGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGG---GEEEEEEESE
T ss_pred CEEEEEeCCCCCCCCCCccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCch---hhcCcEEEee
Confidence 5899999999999974 237999999999999999999999999999999999999999999 7889998877
Q ss_pred cC---CCCcCCCCCCCChH-HHHHHhhcCCcc-c-cChHHHHHHHH------HcC-CchHHHHHHHHhccCCCCCCCCCC
Q 045335 173 TP---GKVRAGGDGEDHPA-ELIHFLSKLPKE-V-ISKQEVVNALI------QQG-FSKDVAQWVVTNLKPAASFGASSS 239 (339)
Q Consensus 173 ~~---~~~~~~~~~~~~~~-~~~~~~~~~~~~-~-~~~~~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 239 (339)
.+ ....... ... .+...+...... . ........... ... ................
T Consensus 78 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 145 (230)
T PF00561_consen 78 PPDLPDGLWNRI----WPRGNLQGQLLDNFFNFLSDPIKPLLGRWPKQFFAYDREFVEDFLKQFQSQQYARF-------- 145 (230)
T ss_dssp SSHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHT--------
T ss_pred eccchhhhhHHH----HhhhhhhhhHHHhhhccccccchhhhhhhhhheeeccCccccchhhccchhhhhHH--------
Confidence 52 0000000 000 000000000000 0 00000000000 000 0000000000000000
Q ss_pred ccceechHHHHH----HHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC
Q 045335 240 FSWVFDLEGIAE----MYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED 315 (339)
Q Consensus 240 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~ 315 (339)
........ ........+....+..+. +|++++.|+.| .+++++....+.+. +|+.+++++++
T Consensus 146 ----~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~--~p~l~i~~~~D-------~~~p~~~~~~~~~~-~~~~~~~~~~~ 211 (230)
T PF00561_consen 146 ----AETDAFDNMFWNALGYFSVWDPSPALSNIK--VPTLIIWGEDD-------PLVPPESSEQLAKL-IPNSQLVLIEG 211 (230)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHTTTT--SEEEEEEETTC-------SSSHHHHHHHHHHH-STTEEEEEETT
T ss_pred ----HHHHHHhhhccccccccccccccccccccC--CCeEEEEeCCC-------CCCCHHHHHHHHHh-cCCCEEEECCC
Confidence 00011111 111122233344555666 99999999997 46788888886665 79999999999
Q ss_pred CCccccccChhHHHHHHH
Q 045335 316 AGHWVHADNPDGLFRILT 333 (339)
Q Consensus 316 ~gH~~~~e~p~~~~~~i~ 333 (339)
+||+.+++.|+++++.|.
T Consensus 212 ~GH~~~~~~~~~~~~~i~ 229 (230)
T PF00561_consen 212 SGHFAFLEGPDEFNEIII 229 (230)
T ss_dssp CCSTHHHHSHHHHHHHHH
T ss_pred CChHHHhcCHHhhhhhhc
Confidence 999999999999999886
No 57
>PRK10566 esterase; Provisional
Probab=99.85 E-value=1.4e-19 Score=151.57 Aligned_cols=91 Identities=23% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCH-------HHHHHHHHHHHHH-----
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTV-------ASTALDVLKLVAQ----- 132 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~-------~~~a~dl~~~l~~----- 132 (339)
+..|+||++||++++...|..+...|++. ||+|+++|+||||.+... ..++ ....+|+.++++.
T Consensus 25 ~~~p~vv~~HG~~~~~~~~~~~~~~l~~~--G~~v~~~d~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (249)
T PRK10566 25 TPLPTVFFYHGFTSSKLVYSYFAVALAQA--GFRVIMPDAPMHGARFSGDEARRLNHFWQILLQNMQEFPTLRAAIREEG 102 (249)
T ss_pred CCCCEEEEeCCCCcccchHHHHHHHHHhC--CCEEEEecCCcccccCCCccccchhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34689999999999999999999999887 899999999999976321 1221 1223344333433
Q ss_pred -cCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 133 -LRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 133 -l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
++.++++++|||+||.+++.++.++|+
T Consensus 103 ~~~~~~i~v~G~S~Gg~~al~~~~~~~~ 130 (249)
T PRK10566 103 WLLDDRLAVGGASMGGMTALGIMARHPW 130 (249)
T ss_pred CcCccceeEEeecccHHHHHHHHHhCCC
Confidence 234689999999999999999999886
No 58
>PRK13604 luxD acyl transferase; Provisional
Probab=99.84 E-value=1.1e-18 Score=145.52 Aligned_cols=233 Identities=13% Similarity=0.096 Sum_probs=134.4
Q ss_pred CcceeEEeeeCeeEE-EeeccCC-CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC-CCCCCC--CC
Q 045335 43 SGVLAYDLIQGTLVR-WSSMMDK-SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH-QSRKGG--LT 117 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~-~~~~g~~-~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~-G~S~~~--~~ 117 (339)
++..-...-+|..|+ |...+.. .....++||++||++.....+..+++.|+++ ||.|+.+|.+|+ |.|+.. ..
T Consensus 9 ~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~~~~A~~La~~--G~~vLrfD~rg~~GeS~G~~~~~ 86 (307)
T PRK13604 9 TIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHFAGLAEYLSSN--GFHVIRYDSLHHVGLSSGTIDEF 86 (307)
T ss_pred chhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHHHHHHHHHHHC--CCEEEEecCCCCCCCCCCccccC
Confidence 444455666888888 4444421 2234578999999999887799999999998 999999999988 888543 23
Q ss_pred CHHHHHHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHh
Q 045335 118 TVASTALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFL 194 (339)
Q Consensus 118 ~~~~~a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~ 194 (339)
++....+|+..+++.+ +.+++.|+||||||.+|+..|... .+..+|+.++. ... ...+...+
T Consensus 87 t~s~g~~Dl~aaid~lk~~~~~~I~LiG~SmGgava~~~A~~~-----~v~~lI~~sp~-~~l---------~d~l~~~~ 151 (307)
T PRK13604 87 TMSIGKNSLLTVVDWLNTRGINNLGLIAASLSARIAYEVINEI-----DLSFLITAVGV-VNL---------RDTLERAL 151 (307)
T ss_pred cccccHHHHHHHHHHHHhcCCCceEEEEECHHHHHHHHHhcCC-----CCCEEEEcCCc-ccH---------HHHHHHhh
Confidence 4444566765555444 557899999999999997776533 34455544332 111 01111000
Q ss_pred hcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCcee
Q 045335 195 SKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHV 274 (339)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv 274 (339)
......+. .......+.-.........++. ...... .. ......+.+..+. +|+
T Consensus 152 ~~~~~~~p-~~~lp~~~d~~g~~l~~~~f~~-~~~~~~-------------~~---------~~~s~i~~~~~l~--~Pv 205 (307)
T PRK13604 152 GYDYLSLP-IDELPEDLDFEGHNLGSEVFVT-DCFKHG-------------WD---------TLDSTINKMKGLD--IPF 205 (307)
T ss_pred hcccccCc-ccccccccccccccccHHHHHH-HHHhcC-------------cc---------ccccHHHHHhhcC--CCE
Confidence 00000000 0000000000000000001110 000000 00 0001113344454 899
Q ss_pred eEEeccchhhhhhhhhHHHHHHHHHHHHhCC-CCeeEEEecCCCccccccChh
Q 045335 275 NFLKAERSLHRWALEDIQRIHAAEELAVDGG-GGVEMHVLEDAGHWVHADNPD 326 (339)
Q Consensus 275 l~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~ 326 (339)
|+|+|+.| ++++....+++.+... .+.+++++||++|.+. |++-
T Consensus 206 LiIHG~~D-------~lVp~~~s~~l~e~~~s~~kkl~~i~Ga~H~l~-~~~~ 250 (307)
T PRK13604 206 IAFTANND-------SWVKQSEVIDLLDSIRSEQCKLYSLIGSSHDLG-ENLV 250 (307)
T ss_pred EEEEcCCC-------CccCHHHHHHHHHHhccCCcEEEEeCCCccccC-cchH
Confidence 99999998 7899999999998752 4799999999999986 5543
No 59
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.83 E-value=4.3e-19 Score=149.15 Aligned_cols=116 Identities=24% Similarity=0.352 Sum_probs=91.2
Q ss_pred CeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 53 GTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 53 g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
+..+.|...+.. +|+++|+||++++...|......+......|+++++|+||||.|....++...+++++..+++.
T Consensus 9 ~~~~~~~~~~~~----~~~i~~~hg~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~g~s~~~~~~~~~~~~~~~~~~~~ 84 (282)
T COG0596 9 GVRLAYREAGGG----GPPLVLLHGFPGSSSVWRPVFKVLPALAARYRVIAPDLRGHGRSDPAGYSLSAYADDLAALLDA 84 (282)
T ss_pred CeEEEEeecCCC----CCeEEEeCCCCCchhhhHHHHHHhhccccceEEEEecccCCCCCCcccccHHHHHHHHHHHHHH
Confidence 344555555442 5699999999999999988444444431015999999999999961124566669999999999
Q ss_pred cCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 133 LRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 133 l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
++..+++++|||+||.+++.++.++|+ ++.+++++++...
T Consensus 85 ~~~~~~~l~G~S~Gg~~~~~~~~~~p~---~~~~~v~~~~~~~ 124 (282)
T COG0596 85 LGLEKVVLVGHSMGGAVALALALRHPD---RVRGLVLIGPAPP 124 (282)
T ss_pred hCCCceEEEEecccHHHHHHHHHhcch---hhheeeEecCCCC
Confidence 999899999999999999999999999 7779999887644
No 60
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=99.83 E-value=5.3e-18 Score=148.81 Aligned_cols=103 Identities=8% Similarity=0.025 Sum_probs=81.4
Q ss_pred CCCCeEEEEcCCCCChhhH-----HHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHH-HH----HHHHHcCCC
Q 045335 67 PDPPTAVLLHGILGSRKNW-----GTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALD-VL----KLVAQLRIT 136 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~-----~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~d-l~----~~l~~l~~~ 136 (339)
..+++||++||+..+...| ..+++.|.+. ||+|+++|++|+|.|.. ..++++++.+ +. .+.+..+.+
T Consensus 60 ~~~~pvl~v~~~~~~~~~~d~~~~~~~~~~L~~~--G~~V~~~D~~g~g~s~~-~~~~~d~~~~~~~~~v~~l~~~~~~~ 136 (350)
T TIGR01836 60 THKTPLLIVYALVNRPYMLDLQEDRSLVRGLLER--GQDVYLIDWGYPDRADR-YLTLDDYINGYIDKCVDYICRTSKLD 136 (350)
T ss_pred CCCCcEEEeccccccceeccCCCCchHHHHHHHC--CCeEEEEeCCCCCHHHh-cCCHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3466899999987655444 6889999987 89999999999998753 4577777543 43 444556778
Q ss_pred ceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 137 PRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 137 ~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
+++++||||||.+++.+++.+|+ ++.++++++++..
T Consensus 137 ~i~lvGhS~GG~i~~~~~~~~~~---~v~~lv~~~~p~~ 172 (350)
T TIGR01836 137 QISLLGICQGGTFSLCYAALYPD---KIKNLVTMVTPVD 172 (350)
T ss_pred cccEEEECHHHHHHHHHHHhCch---heeeEEEeccccc
Confidence 99999999999999999999998 6778888876543
No 61
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.82 E-value=4.3e-18 Score=134.51 Aligned_cols=225 Identities=13% Similarity=0.167 Sum_probs=146.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC--CCCCCCHHHHHHHHHHHHH-HcCCCceEEEEEc
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR--KGGLTTVASTALDVLKLVA-QLRITPRVLVGHS 144 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S--~~~~~~~~~~a~dl~~~l~-~l~~~~~~lvGhS 144 (339)
.++.++|+|-.|+++..|+.+...|.... .++++++||+|.- .+...+++.+|+.|..-+. -..-+++.+.|||
T Consensus 6 ~~~~L~cfP~AGGsa~~fr~W~~~lp~~i---el~avqlPGR~~r~~ep~~~di~~Lad~la~el~~~~~d~P~alfGHS 82 (244)
T COG3208 6 ARLRLFCFPHAGGSASLFRSWSRRLPADI---ELLAVQLPGRGDRFGEPLLTDIESLADELANELLPPLLDAPFALFGHS 82 (244)
T ss_pred CCceEEEecCCCCCHHHHHHHHhhCCchh---heeeecCCCcccccCCcccccHHHHHHHHHHHhccccCCCCeeecccc
Confidence 46789999999999999999988887765 9999999999966 3445899999999999888 4555789999999
Q ss_pred hhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcC-CCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHH
Q 045335 145 FGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRA-GGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQW 223 (339)
Q Consensus 145 ~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (339)
|||++|.++|.+.-..-..+..+.+.++.+..... ..........+...+..+.. ...++. -.+++.++
T Consensus 83 mGa~lAfEvArrl~~~g~~p~~lfisg~~aP~~~~~~~i~~~~D~~~l~~l~~lgG---~p~e~l-------ed~El~~l 152 (244)
T COG3208 83 MGAMLAFEVARRLERAGLPPRALFISGCRAPHYDRGKQIHHLDDADFLADLVDLGG---TPPELL-------EDPELMAL 152 (244)
T ss_pred hhHHHHHHHHHHHHHcCCCcceEEEecCCCCCCcccCCccCCCHHHHHHHHHHhCC---CChHHh-------cCHHHHHH
Confidence 99999999999875543234455555544322211 11111112222222222110 000000 01122222
Q ss_pred HHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHh
Q 045335 224 VVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVD 303 (339)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~ 303 (339)
+. ..+.+.+..+..+.+.. ..+..||+..+.|++| ..+..+....+.+.
T Consensus 153 ~L---------------------PilRAD~~~~e~Y~~~~---~~pl~~pi~~~~G~~D-------~~vs~~~~~~W~~~ 201 (244)
T COG3208 153 FL---------------------PILRADFRALESYRYPP---PAPLACPIHAFGGEKD-------HEVSRDELGAWREH 201 (244)
T ss_pred HH---------------------HHHHHHHHHhcccccCC---CCCcCcceEEeccCcc-------hhccHHHHHHHHHh
Confidence 22 22222222222222211 2344499999999998 35666666666666
Q ss_pred CCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 304 GGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 304 ~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
.....++.+++| ||+...++.++|.+.|.+.+.
T Consensus 202 t~~~f~l~~fdG-gHFfl~~~~~~v~~~i~~~l~ 234 (244)
T COG3208 202 TKGDFTLRVFDG-GHFFLNQQREEVLARLEQHLA 234 (244)
T ss_pred hcCCceEEEecC-cceehhhhHHHHHHHHHHHhh
Confidence 545789999988 999999999999999998874
No 62
>PRK07868 acyl-CoA synthetase; Validated
Probab=99.78 E-value=1.5e-17 Score=163.97 Aligned_cols=249 Identities=16% Similarity=0.170 Sum_probs=141.4
Q ss_pred CCCCeEEEEcCCCCChhhHHHH-----HHHHHHhCCCceEEEEeeCCCCCCCCC----CCCHHHHHHHHHHHHHH---cC
Q 045335 67 PDPPTAVLLHGILGSRKNWGTF-----ARRLARAYPTWQTCDVMVIPHQSRKGG----LTTVASTALDVLKLVAQ---LR 134 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~-----~~~L~~~~~g~~vi~~D~~G~G~S~~~----~~~~~~~a~dl~~~l~~---l~ 134 (339)
..++||||+||++.+...|+.+ ++.|.+. ||+|+++| +|.++++ ..++.+++..+.+.++. +.
T Consensus 65 ~~~~plllvhg~~~~~~~~d~~~~~s~v~~L~~~--g~~v~~~d---~G~~~~~~~~~~~~l~~~i~~l~~~l~~v~~~~ 139 (994)
T PRK07868 65 PVGPPVLMVHPMMMSADMWDVTRDDGAVGILHRA--GLDPWVID---FGSPDKVEGGMERNLADHVVALSEAIDTVKDVT 139 (994)
T ss_pred CCCCcEEEECCCCCCccceecCCcccHHHHHHHC--CCEEEEEc---CCCCChhHcCccCCHHHHHHHHHHHHHHHHHhh
Confidence 3679999999999999999865 7889887 78999999 4666432 25777777777766654 34
Q ss_pred CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHH--------H-HHhhcCCccccChH
Q 045335 135 ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAEL--------I-HFLSKLPKEVISKQ 205 (339)
Q Consensus 135 ~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~ 205 (339)
.++++|+||||||.+++.+|+.+++. +|.++++++++.-........ .+..+ . ..+... ... .
T Consensus 140 ~~~v~lvG~s~GG~~a~~~aa~~~~~--~v~~lvl~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~p--~ 211 (994)
T PRK07868 140 GRDVHLVGYSQGGMFCYQAAAYRRSK--DIASIVTFGSPVDTLAALPMG--IPAGLAAAAADFMADHVFNRL--DIP--G 211 (994)
T ss_pred CCceEEEEEChhHHHHHHHHHhcCCC--ccceEEEEecccccCCCCccc--chhhhhhcccccchhhhhhcC--CCC--H
Confidence 47899999999999999998865431 677899887764222110000 00000 0 000000 000 0
Q ss_pred HHHHHHHHc-CCchHHHH--HHHHhccCCCCC-------CCCCCccc-eechHHHHHHHhhhhhh--------hh---hh
Q 045335 206 EVVNALIQQ-GFSKDVAQ--WVVTNLKPAASF-------GASSSFSW-VFDLEGIAEMYQSYDET--------NL---WK 263 (339)
Q Consensus 206 ~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~~~--------~~---~~ 263 (339)
......... ........ .+...+...... .......| ...-.........+... .. ..
T Consensus 212 ~~~~~~~~~l~p~~~~~~~~~~~~~l~~~~~~~~~e~~~~~~~~~~w~~~~g~~~~~~~~~~~~~n~~~~g~~~~~~~~~ 291 (994)
T PRK07868 212 WMARTGFQMLDPVKTAKARVDFLRQLHDREALLPREQQRRFLESEGWIAWSGPAISELLKQFIAHNRMMTGGFAINGQMV 291 (994)
T ss_pred HHHHHHHHhcChhHHHHHHHHHHHhcCchhhhccchhhHhHHHHhhccccchHHHHHHHHHHHHhCcccCceEEECCEEc
Confidence 000000000 00000000 000111100000 00000001 00011122222222110 00 11
Q ss_pred hhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeE-EEecCCCcccccc---ChhHHHHHHHHhhhc
Q 045335 264 LVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEM-HVLEDAGHWVHAD---NPDGLFRILTSSFEG 338 (339)
Q Consensus 264 ~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~-~~i~~~gH~~~~e---~p~~~~~~i~~fl~~ 338 (339)
.+.+++ +|+|+|+|+.| .++++...+.+.+. +|++++ .+++++||+.++- .|+++...|.+||++
T Consensus 292 ~L~~i~--~P~L~i~G~~D-------~ivp~~~~~~l~~~-i~~a~~~~~~~~~GH~g~~~g~~a~~~~wp~i~~wl~~ 360 (994)
T PRK07868 292 TLADIT--CPVLAFVGEVD-------DIGQPASVRGIRRA-APNAEVYESLIRAGHFGLVVGSRAAQQTWPTVADWVKW 360 (994)
T ss_pred chhhCC--CCEEEEEeCCC-------CCCCHHHHHHHHHh-CCCCeEEEEeCCCCCEeeeechhhhhhhChHHHHHHHH
Confidence 356666 99999999998 57888888888776 699987 6889999998873 488899999999864
No 63
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=99.77 E-value=1.2e-17 Score=138.55 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=89.4
Q ss_pred eeCeeEEEeeccCCCCCCCCeEEEEcCCCCC----hhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC--CCCCHHHHHH
Q 045335 51 IQGTLVRWSSMMDKSIPDPPTAVLLHGILGS----RKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG--GLTTVASTAL 124 (339)
Q Consensus 51 ~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~----~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--~~~~~~~~a~ 124 (339)
..|....++.... +.+..++|||+||++.. ...|..+.+.|++. ||+|+++|+||||.|.. ...+++.+++
T Consensus 8 ~~g~~~~~~~~p~-~~~~~~~VlllHG~g~~~~~~~~~~~~la~~La~~--Gy~Vl~~Dl~G~G~S~g~~~~~~~~~~~~ 84 (266)
T TIGR03101 8 PHGFRFCLYHPPV-AVGPRGVVIYLPPFAEEMNKSRRMVALQARAFAAG--GFGVLQIDLYGCGDSAGDFAAARWDVWKE 84 (266)
T ss_pred CCCcEEEEEecCC-CCCCceEEEEECCCcccccchhHHHHHHHHHHHHC--CCEEEEECCCCCCCCCCccccCCHHHHHH
Confidence 3444444443332 22235789999999864 35677788899876 89999999999999954 3467888888
Q ss_pred HHHHHH---HHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 125 DVLKLV---AQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 125 dl~~~l---~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|+..++ ++.+.++++|+||||||.+++.+|.++|+ ++.++|++++.
T Consensus 85 Dv~~ai~~L~~~~~~~v~LvG~SmGG~vAl~~A~~~p~---~v~~lVL~~P~ 133 (266)
T TIGR03101 85 DVAAAYRWLIEQGHPPVTLWGLRLGALLALDAANPLAA---KCNRLVLWQPV 133 (266)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECHHHHHHHHHHHhCcc---ccceEEEeccc
Confidence 877754 55567899999999999999999999998 67789888754
No 64
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=99.77 E-value=1.8e-17 Score=138.64 Aligned_cols=264 Identities=12% Similarity=0.095 Sum_probs=168.0
Q ss_pred EeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh-----------hHHHHH---HHHHHhCCCceEEEEeeCCCC-CCC
Q 045335 49 DLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK-----------NWGTFA---RRLARAYPTWQTCDVMVIPHQ-SRK 113 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~-----------~~~~~~---~~L~~~~~g~~vi~~D~~G~G-~S~ 113 (339)
..++...+.|+.+|..+......||++||+.+++. -|..++ ..+.-. .|.||+.|-.|.+ .|.
T Consensus 31 ~~l~~~~vay~T~Gtln~~~~NaVli~HaLtG~~h~~~~~~~~~~GWW~~liGpG~~iDt~--r~fvIc~NvlG~c~GSt 108 (368)
T COG2021 31 GVLSDARVAYETYGTLNAEKDNAVLICHALTGDSHAAGTADDGEKGWWDDLIGPGKPIDTE--RFFVICTNVLGGCKGST 108 (368)
T ss_pred CcccCcEEEEEecccccccCCceEEEeccccCcccccccCCCCCCccHHHhcCCCCCCCcc--ceEEEEecCCCCCCCCC
Confidence 35567889999999877656778999999998653 234433 112221 4799999999975 331
Q ss_pred -------C--------CCCCHHHHHHHHHHHHHHcCCCceE-EEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCC
Q 045335 114 -------G--------GLTTVASTALDVLKLVAQLRITPRV-LVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKV 177 (339)
Q Consensus 114 -------~--------~~~~~~~~a~dl~~~l~~l~~~~~~-lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~ 177 (339)
. |.+|+.|++..-..++++||++++. +||-||||+.|++++..||| +|.+++.+++++...
T Consensus 109 gP~s~~p~g~~yg~~FP~~ti~D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd---~V~~~i~ia~~~r~s 185 (368)
T COG2021 109 GPSSINPGGKPYGSDFPVITIRDMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPD---RVRRAIPIATAARLS 185 (368)
T ss_pred CCCCcCCCCCccccCCCcccHHHHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChH---HHhhhheecccccCC
Confidence 1 3378999999889999999999975 99999999999999999999 777888888765443
Q ss_pred cCCCCCCCChHHHHHHhhcCCcc-------------------------ccChHHHHHHHHHcCC----c-----hHHHHH
Q 045335 178 RAGGDGEDHPAELIHFLSKLPKE-------------------------VISKQEVVNALIQQGF----S-----KDVAQW 223 (339)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~----~-----~~~~~~ 223 (339)
+..-.. .......+..-|.. +.+...+.+++.+... . .....+
T Consensus 186 ~~~ia~---~~~~r~AI~~DP~~n~G~Y~~~~~P~~GL~~AR~l~~ltYrS~~~~~~rF~r~~~~~~~~~~~~~f~vESY 262 (368)
T COG2021 186 AQNIAF---NEVQRQAIEADPDWNGGDYYEGTQPERGLRLARMLAHLTYRSEEELDERFGRRLQADPLRGGGVRFAVESY 262 (368)
T ss_pred HHHHHH---HHHHHHHHHhCCCccCCCccCCCCcchhHHHHHHHHHHHccCHHHHHHHhcccccccccCCCchhHHHHHH
Confidence 221000 00001111111111 1111111111111000 0 011111
Q ss_pred HHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhh-------hhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHH
Q 045335 224 VVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNL-------WKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHA 296 (339)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~ 296 (339)
+... -.++.-+++...+.....++...|. ...++.++ +|++++.-+.| -+.|++.
T Consensus 263 L~~q---------g~kf~~rfDaNsYL~lt~ald~~D~s~~~~~l~~al~~i~--~~~lv~gi~sD-------~lfp~~~ 324 (368)
T COG2021 263 LDYQ---------GDKFVARFDANSYLYLTRALDYHDVSRGRGDLTAALARIK--APVLVVGITSD-------WLFPPEL 324 (368)
T ss_pred HHHH---------HHHHHhccCcchHHHHHHHHHhcCCCCCcCcHHHHHhcCc--cCEEEEEeccc-------ccCCHHH
Confidence 1111 1122335555555555555544443 34477777 89999988876 3788888
Q ss_pred HHHHHHhCCCCee-EEEec-CCCccccccChhHHHHHHHHhhhcC
Q 045335 297 AEELAVDGGGGVE-MHVLE-DAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 297 ~~~~~~~~~~~~~-~~~i~-~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
.++..+.+ +.+. +++|+ ..||..++...+.+...|..||+.+
T Consensus 325 ~~~~~~~L-~~~~~~~~i~S~~GHDaFL~e~~~~~~~i~~fL~~~ 368 (368)
T COG2021 325 QRALAEAL-PAAGALREIDSPYGHDAFLVESEAVGPLIRKFLALI 368 (368)
T ss_pred HHHHHHhc-cccCceEEecCCCCchhhhcchhhhhHHHHHHhhcC
Confidence 99988875 5554 76664 4799999999999999999999753
No 65
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=99.76 E-value=2.8e-16 Score=126.72 Aligned_cols=97 Identities=20% Similarity=0.171 Sum_probs=87.2
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC---CCCHHHHHHHHHHHHHHcCCC-ceEEEEEch
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG---LTTVASTALDVLKLVAQLRIT-PRVLVGHSF 145 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---~~~~~~~a~dl~~~l~~l~~~-~~~lvGhS~ 145 (339)
.+||-+||.++|...|+.+.+.|.+. |+|+|.+++||+|.++.+ .|+-.+-...+.++|+.++++ +++.+|||.
T Consensus 36 gTVv~~hGsPGSH~DFkYi~~~l~~~--~iR~I~iN~PGf~~t~~~~~~~~~n~er~~~~~~ll~~l~i~~~~i~~gHSr 113 (297)
T PF06342_consen 36 GTVVAFHGSPGSHNDFKYIRPPLDEA--GIRFIGINYPGFGFTPGYPDQQYTNEERQNFVNALLDELGIKGKLIFLGHSR 113 (297)
T ss_pred eeEEEecCCCCCccchhhhhhHHHHc--CeEEEEeCCCCCCCCCCCcccccChHHHHHHHHHHHHHcCCCCceEEEEecc
Confidence 38999999999999999999999998 899999999999999654 389999999999999999995 578899999
Q ss_pred hHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 146 GGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 146 Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
||-.|+.+|..+| +.++++++++
T Consensus 114 Gcenal~la~~~~-----~~g~~lin~~ 136 (297)
T PF06342_consen 114 GCENALQLAVTHP-----LHGLVLINPP 136 (297)
T ss_pred chHHHHHHHhcCc-----cceEEEecCC
Confidence 9999999999985 3488888765
No 66
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=99.76 E-value=4.2e-17 Score=124.74 Aligned_cols=145 Identities=23% Similarity=0.346 Sum_probs=107.7
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHH
Q 045335 71 TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia 150 (339)
+|||+||++++...|..+.+.|++. ||.|+.+|+||+|.+.... ..+++.+++. -+..+.+++.|+|||+||.++
T Consensus 1 ~vv~~HG~~~~~~~~~~~~~~l~~~--G~~v~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~i~l~G~S~Gg~~a 75 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQPLAEALAEQ--GYAVVAFDYPGHGDSDGAD-AVERVLADIR--AGYPDPDRIILIGHSMGGAIA 75 (145)
T ss_dssp EEEEECTTTTTTHHHHHHHHHHHHT--TEEEEEESCTTSTTSHHSH-HHHHHHHHHH--HHHCTCCEEEEEEETHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHC--CCEEEEEecCCCCccchhH-HHHHHHHHHH--hhcCCCCcEEEEEEccCcHHH
Confidence 5899999999999999999999998 8999999999999882211 2222222222 112366899999999999999
Q ss_pred HHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccC
Q 045335 151 LSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKP 230 (339)
Q Consensus 151 ~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (339)
+.++.++ . ++++++++++.+.
T Consensus 76 ~~~~~~~-~---~v~~~v~~~~~~~------------------------------------------------------- 96 (145)
T PF12695_consen 76 ANLAARN-P---RVKAVVLLSPYPD------------------------------------------------------- 96 (145)
T ss_dssp HHHHHHS-T---TESEEEEESESSG-------------------------------------------------------
T ss_pred HHHhhhc-c---ceeEEEEecCccc-------------------------------------------------------
Confidence 9999988 4 6778888865100
Q ss_pred CCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeE
Q 045335 231 AASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEM 310 (339)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~ 310 (339)
...+.... +|+++++|++| ..++.+..+++.+++..+.++
T Consensus 97 -------------------------------~~~~~~~~--~pv~~i~g~~D-------~~~~~~~~~~~~~~~~~~~~~ 136 (145)
T PF12695_consen 97 -------------------------------SEDLAKIR--IPVLFIHGEND-------PLVPPEQVRRLYEALPGPKEL 136 (145)
T ss_dssp -------------------------------CHHHTTTT--SEEEEEEETT--------SSSHHHHHHHHHHHHCSSEEE
T ss_pred -------------------------------hhhhhccC--CcEEEEEECCC-------CcCCHHHHHHHHHHcCCCcEE
Confidence 00011112 69999999998 577888888888876557999
Q ss_pred EEecCCCcc
Q 045335 311 HVLEDAGHW 319 (339)
Q Consensus 311 ~~i~~~gH~ 319 (339)
++++|++|+
T Consensus 137 ~~i~g~~H~ 145 (145)
T PF12695_consen 137 YIIPGAGHF 145 (145)
T ss_dssp EEETTS-TT
T ss_pred EEeCCCcCc
Confidence 999999995
No 67
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=99.74 E-value=9.3e-16 Score=125.40 Aligned_cols=249 Identities=14% Similarity=0.149 Sum_probs=142.7
Q ss_pred eeEEEeeccCCCCCCCCeEEEEcCCCCChhh-HHHHH-----HHHHHhCCCceEEEEeeCCCCCCCC---C---CCCHHH
Q 045335 54 TLVRWSSMMDKSIPDPPTAVLLHGILGSRKN-WGTFA-----RRLARAYPTWQTCDVMVIPHQSRKG---G---LTTVAS 121 (339)
Q Consensus 54 ~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~-~~~~~-----~~L~~~~~g~~vi~~D~~G~G~S~~---~---~~~~~~ 121 (339)
..+....+|... +++|++|-.|..|.+... |..+. ..+.+++ -++-+|.||+..-.. . -.|+++
T Consensus 9 G~v~V~v~G~~~-~~kp~ilT~HDvGlNh~scF~~ff~~~~m~~i~~~f---~i~Hi~aPGqe~ga~~~p~~y~yPsmd~ 84 (283)
T PF03096_consen 9 GSVHVTVQGDPK-GNKPAILTYHDVGLNHKSCFQGFFNFEDMQEILQNF---CIYHIDAPGQEEGAATLPEGYQYPSMDQ 84 (283)
T ss_dssp EEEEEEEESS---TTS-EEEEE--TT--HHHHCHHHHCSHHHHHHHTTS---EEEEEE-TTTSTT-----TT-----HHH
T ss_pred eEEEEEEEecCC-CCCceEEEeccccccchHHHHHHhcchhHHHHhhce---EEEEEeCCCCCCCcccccccccccCHHH
Confidence 456777777632 368999999999998865 66553 5566655 999999999975421 1 259999
Q ss_pred HHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhc--CCc
Q 045335 122 TALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSK--LPK 199 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 199 (339)
+|+++.+++++++++.++-+|-..||.|..++|..||+ +|.++|++++.+..... .+.....+.. +..
T Consensus 85 LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~---~V~GLiLvn~~~~~~gw-------~Ew~~~K~~~~~L~~ 154 (283)
T PF03096_consen 85 LAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPE---RVLGLILVNPTCTAAGW-------MEWFYQKLSSWLLYS 154 (283)
T ss_dssp HHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGG---GEEEEEEES---S---H-------HHHHHHHHH------
T ss_pred HHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCcc---ceeEEEEEecCCCCccH-------HHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999999 88899999887543211 1111111111 000
Q ss_pred -ccc--ChHHHHHHHHHc---CCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhh-hhhhhhhhhcCCCCc
Q 045335 200 -EVI--SKQEVVNALIQQ---GFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYD-ETNLWKLVENLPQGV 272 (339)
Q Consensus 200 -~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 272 (339)
... ..+.+...+... ....+..+.....+.. ..++..+...+.++. +.|+....+... |
T Consensus 155 ~gmt~~~~d~Ll~h~Fg~~~~~~n~Dlv~~yr~~l~~------------~~Np~Nl~~f~~sy~~R~DL~~~~~~~~--c 220 (283)
T PF03096_consen 155 YGMTSSVKDYLLWHYFGKEEEENNSDLVQTYRQHLDE------------RINPKNLALFLNSYNSRTDLSIERPSLG--C 220 (283)
T ss_dssp -CTTS-HHHHHHHHHS-HHHHHCT-HHHHHHHHHHHT-------------TTHHHHHHHHHHHHT-----SECTTCC--S
T ss_pred cccccchHHhhhhcccccccccccHHHHHHHHHHHhc------------CCCHHHHHHHHHHHhccccchhhcCCCC--C
Confidence 000 011112111110 0122333333444433 223455555555553 344444455445 9
Q ss_pred eeeEEeccchhhhhhhhhHHHHHHHHHHHHhCC-CCeeEEEecCCCccccccChhHHHHHHHHhhhcC
Q 045335 273 HVNFLKAERSLHRWALEDIQRIHAAEELAVDGG-GGVEMHVLEDAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 273 pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
|+|++.|+.+... ....++..++- .+.++..+++||=.+..|+|+.+++.++-||+++
T Consensus 221 ~vLlvvG~~Sp~~---------~~vv~~ns~Ldp~~ttllkv~dcGglV~eEqP~klaea~~lFlQG~ 279 (283)
T PF03096_consen 221 PVLLVVGDNSPHV---------DDVVEMNSKLDPTKTTLLKVADCGGLVLEEQPGKLAEAFKLFLQGM 279 (283)
T ss_dssp -EEEEEETTSTTH---------HHHHHHHHHS-CCCEEEEEETT-TT-HHHH-HHHHHHHHHHHHHHT
T ss_pred CeEEEEecCCcch---------hhHHHHHhhcCcccceEEEecccCCcccccCcHHHHHHHHHHHccC
Confidence 9999999987432 22333333332 4689999999999999999999999999999864
No 68
>KOG4667 consensus Predicted esterase [Lipid transport and metabolism]
Probab=99.70 E-value=2.2e-15 Score=115.73 Aligned_cols=216 Identities=16% Similarity=0.208 Sum_probs=137.8
Q ss_pred CCCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC--CCHHHHHHHHHHHHHHcCCCc---eEE
Q 045335 68 DPPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL--TTVASTALDVLKLVAQLRITP---RVL 140 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~--~~~~~~a~dl~~~l~~l~~~~---~~l 140 (339)
+...+|++||+-++. .....++..|++. |+.++-+|.+|.|.|...- -.....|+|+..+++.+.-.. .++
T Consensus 32 s~e~vvlcHGfrS~Kn~~~~~~vA~~~e~~--gis~fRfDF~GnGeS~gsf~~Gn~~~eadDL~sV~q~~s~~nr~v~vi 109 (269)
T KOG4667|consen 32 STEIVVLCHGFRSHKNAIIMKNVAKALEKE--GISAFRFDFSGNGESEGSFYYGNYNTEADDLHSVIQYFSNSNRVVPVI 109 (269)
T ss_pred CceEEEEeeccccccchHHHHHHHHHHHhc--CceEEEEEecCCCCcCCccccCcccchHHHHHHHHHHhccCceEEEEE
Confidence 478899999999876 3445666777776 8999999999999995432 244455699999999985432 378
Q ss_pred EEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHH
Q 045335 141 VGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDV 220 (339)
Q Consensus 141 vGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (339)
+|||-||.+++.+|.++++ +..++.+.+. ...... +.. .+ .+...+++...++
T Consensus 110 ~gHSkGg~Vvl~ya~K~~d----~~~viNcsGR--ydl~~~--------I~e---Rl------g~~~l~~ike~Gf---- 162 (269)
T KOG4667|consen 110 LGHSKGGDVVLLYASKYHD----IRNVINCSGR--YDLKNG--------INE---RL------GEDYLERIKEQGF---- 162 (269)
T ss_pred EeecCccHHHHHHHHhhcC----chheEEcccc--cchhcc--------hhh---hh------cccHHHHHHhCCc----
Confidence 9999999999999999986 2234444322 110000 000 00 0111111111111
Q ss_pred HHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHH
Q 045335 221 AQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEEL 300 (339)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~ 300 (339)
..... ..+.+......+.+... ...+..+...+|+..|+||-++|..| .++|.+.+.++
T Consensus 163 --------id~~~--rkG~y~~rvt~eSlmdr----Lntd~h~aclkId~~C~VLTvhGs~D-------~IVPve~Akef 221 (269)
T KOG4667|consen 163 --------IDVGP--RKGKYGYRVTEESLMDR----LNTDIHEACLKIDKQCRVLTVHGSED-------EIVPVEDAKEF 221 (269)
T ss_pred --------eecCc--ccCCcCceecHHHHHHH----HhchhhhhhcCcCccCceEEEeccCC-------ceeechhHHHH
Confidence 11110 02333333334433332 33455566677999999999999887 68899999999
Q ss_pred HHhCCCCeeEEEecCCCccccccChhHHHHHHHHh
Q 045335 301 AVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSS 335 (339)
Q Consensus 301 ~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~f 335 (339)
++. +|+.++.++||+.|..-.. ..+.+....+|
T Consensus 222 Ak~-i~nH~L~iIEgADHnyt~~-q~~l~~lgl~f 254 (269)
T KOG4667|consen 222 AKI-IPNHKLEIIEGADHNYTGH-QSQLVSLGLEF 254 (269)
T ss_pred HHh-ccCCceEEecCCCcCccch-hhhHhhhccee
Confidence 987 7999999999999976433 23334444444
No 69
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=99.69 E-value=1.4e-14 Score=122.72 Aligned_cols=118 Identities=18% Similarity=0.142 Sum_probs=84.4
Q ss_pred eCeeEEEeeccCCC--CCCCCeEEEEcCCCCChhhHHH--HHHHHHHhCCCceEEEEee--CCCCCCCC-----------
Q 045335 52 QGTLVRWSSMMDKS--IPDPPTAVLLHGILGSRKNWGT--FARRLARAYPTWQTCDVMV--IPHQSRKG----------- 114 (339)
Q Consensus 52 ~g~~l~~~~~g~~~--~~~~~~vv~lHG~~~~~~~~~~--~~~~L~~~~~g~~vi~~D~--~G~G~S~~----------- 114 (339)
.+..+.|..+.+.+ ....|+|+|+||++++...|.. .+..+++.. |+.|+++|. +|+|.+..
T Consensus 23 ~~~~~~~~v~~P~~~~~~~~P~vvllHG~~~~~~~~~~~~~~~~la~~~-g~~Vv~Pd~~~~g~~~~~~~~~w~~g~~~~ 101 (275)
T TIGR02821 23 CGVPMTFGVFLPPQAAAGPVPVLWYLSGLTCTHENFMIKAGAQRFAAEH-GLALVAPDTSPRGTGIAGEDDAWDFGKGAG 101 (275)
T ss_pred cCCceEEEEEcCCCccCCCCCEEEEccCCCCCccHHHhhhHHHHHHhhc-CcEEEEeCCCCCcCCCCCCcccccccCCcc
Confidence 45566666665532 2346899999999999988854 345676655 899999998 55543210
Q ss_pred -----------CCCCHHH-HHHHHHHHHHH---cCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 115 -----------GLTTVAS-TALDVLKLVAQ---LRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 115 -----------~~~~~~~-~a~dl~~~l~~---l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
..++..+ +++++..++++ ++.+++.++||||||.+++.++.++|+ .+.+++.+++.
T Consensus 102 ~~~d~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~G~S~GG~~a~~~a~~~p~---~~~~~~~~~~~ 172 (275)
T TIGR02821 102 FYVDATEEPWSQHYRMYSYIVQELPALVAAQFPLDGERQGITGHSMGGHGALVIALKNPD---RFKSVSAFAPI 172 (275)
T ss_pred ccccCCcCcccccchHHHHHHHHHHHHHHhhCCCCCCceEEEEEChhHHHHHHHHHhCcc---cceEEEEECCc
Confidence 0123333 46788888877 355789999999999999999999999 55577776554
No 70
>PRK11460 putative hydrolase; Provisional
Probab=99.67 E-value=1.3e-14 Score=119.47 Aligned_cols=172 Identities=20% Similarity=0.276 Sum_probs=108.7
Q ss_pred CCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC-------------CCC---CHHHHHHHHHHH
Q 045335 66 IPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG-------------GLT---TVASTALDVLKL 129 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~-------------~~~---~~~~~a~dl~~~ 129 (339)
.+..++|||+||++++...|..+.+.|.+.++ .+..++.+|...+.. ... .+.+..+.+.++
T Consensus 13 ~~~~~~vIlLHG~G~~~~~~~~l~~~l~~~~~--~~~~i~~~g~~~~~~~~g~~W~~~~~~~~~~~~~~~~~~~~~l~~~ 90 (232)
T PRK11460 13 KPAQQLLLLFHGVGDNPVAMGEIGSWFAPAFP--DALVVSVGGPEPSGNGAGRQWFSVQGITEDNRQARVAAIMPTFIET 90 (232)
T ss_pred CCCCcEEEEEeCCCCChHHHHHHHHHHHHHCC--CCEEECCCCCCCcCCCCCcccccCCCCCccchHHHHHHHHHHHHHH
Confidence 34578999999999999999999999987642 344444455422110 001 122333333333
Q ss_pred H----HHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccC
Q 045335 130 V----AQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVIS 203 (339)
Q Consensus 130 l----~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (339)
+ +..++ ++++|+|||+||.+++.++.++|+ .+.+++.+++... ..+
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~---~~~~vv~~sg~~~--------------------~~~----- 142 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPG---LAGRVIAFSGRYA--------------------SLP----- 142 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCC---cceEEEEeccccc--------------------ccc-----
Confidence 3 33444 579999999999999999999887 3334544432100 000
Q ss_pred hHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchh
Q 045335 204 KQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSL 283 (339)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~ 283 (339)
. .. ..+.|+++++|+.|
T Consensus 143 --------------~------------~~------------------------------------~~~~pvli~hG~~D- 159 (232)
T PRK11460 143 --------------E------------TA------------------------------------PTATTIHLIHGGED- 159 (232)
T ss_pred --------------c------------cc------------------------------------cCCCcEEEEecCCC-
Confidence 0 00 00179999999998
Q ss_pred hhhhhhhHHHHHHHHHHHHhC---CCCeeEEEecCCCccccccChhHHHHHHHHhh
Q 045335 284 HRWALEDIQRIHAAEELAVDG---GGGVEMHVLEDAGHWVHADNPDGLFRILTSSF 336 (339)
Q Consensus 284 ~~~g~~d~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl 336 (339)
++++.+..+++.+.+ ..++++++++++||.+..+.-+.+.+.+.++|
T Consensus 160 ------~vvp~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 160 ------PVIDVAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred ------CccCHHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 566666665555432 34678999999999997655555555555555
No 71
>KOG2931 consensus Differentiation-related gene 1 protein (NDR1 protein), related proteins [Function unknown]
Probab=99.66 E-value=4.5e-14 Score=113.88 Aligned_cols=250 Identities=14% Similarity=0.147 Sum_probs=159.9
Q ss_pred eeEEEeeccCCCCCCCCeEEEEcCCCCChhh-HHHH-----HHHHHHhCCCceEEEEeeCCCCCCCC------CCCCHHH
Q 045335 54 TLVRWSSMMDKSIPDPPTAVLLHGILGSRKN-WGTF-----ARRLARAYPTWQTCDVMVIPHQSRKG------GLTTVAS 121 (339)
Q Consensus 54 ~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~-~~~~-----~~~L~~~~~g~~vi~~D~~G~G~S~~------~~~~~~~ 121 (339)
..++...+|.... ++|++|-.|.++.+... |..+ +..+.+++ -|+.+|.|||-...+ +-.|+++
T Consensus 32 G~v~V~V~Gd~~~-~kpaiiTyhDlglN~~scFq~ff~~p~m~ei~~~f---cv~HV~~PGqe~gAp~~p~~y~yPsmd~ 107 (326)
T KOG2931|consen 32 GVVHVTVYGDPKG-NKPAIITYHDLGLNHKSCFQGFFNFPDMAEILEHF---CVYHVDAPGQEDGAPSFPEGYPYPSMDD 107 (326)
T ss_pred ccEEEEEecCCCC-CCceEEEecccccchHhHhHHhhcCHhHHHHHhhe---EEEecCCCccccCCccCCCCCCCCCHHH
Confidence 4578888887543 68899999999998755 6544 45666665 999999999964421 2259999
Q ss_pred HHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHH--HHhhcCCc
Q 045335 122 TALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELI--HFLSKLPK 199 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 199 (339)
+|++|..++++++++.++-+|-..|+.|..++|..||+ +|.++|++++.+..... .+|. ++...+..
T Consensus 108 LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~---rV~GLvLIn~~~~a~gw--------iew~~~K~~s~~l~ 176 (326)
T KOG2931|consen 108 LADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPE---RVLGLVLINCDPCAKGW--------IEWAYNKVSSNLLY 176 (326)
T ss_pred HHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChh---heeEEEEEecCCCCchH--------HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 88899999987543321 1111 11100000
Q ss_pred cccC----hHHHHHHHHHc---CCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhh-hhhhhhhhcC--C
Q 045335 200 EVIS----KQEVVNALIQQ---GFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDE-TNLWKLVENL--P 269 (339)
Q Consensus 200 ~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~ 269 (339)
...- .+.++...+.. .-..++.+.....+... .++..+...+.++.. .|+....... +
T Consensus 177 ~~Gmt~~~~d~ll~H~Fg~e~~~~~~diVq~Yr~~l~~~------------~N~~Nl~~fl~ayn~R~DL~~~r~~~~~t 244 (326)
T KOG2931|consen 177 YYGMTQGVKDYLLAHHFGKEELGNNSDIVQEYRQHLGER------------LNPKNLALFLNAYNGRRDLSIERPKLGTT 244 (326)
T ss_pred hhchhhhHHHHHHHHHhccccccccHHHHHHHHHHHHhc------------CChhHHHHHHHHhcCCCCccccCCCcCcc
Confidence 0000 01111111111 11223333333333332 233444444444432 2222111111 2
Q ss_pred CCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCC-CCeeEEEecCCCccccccChhHHHHHHHHhhhcC
Q 045335 270 QGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGG-GGVEMHVLEDAGHWVHADNPDGLFRILTSSFEGF 339 (339)
Q Consensus 270 ~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~l 339 (339)
..||+|++.|+....+ +...+...++- .++.+..+.+||-.+..++|..+.+.++-|+++.
T Consensus 245 lkc~vllvvGd~Sp~~---------~~vv~~n~~Ldp~~ttllk~~d~g~l~~e~qP~kl~ea~~~FlqG~ 306 (326)
T KOG2931|consen 245 LKCPVLLVVGDNSPHV---------SAVVECNSKLDPTYTTLLKMADCGGLVQEEQPGKLAEAFKYFLQGM 306 (326)
T ss_pred ccccEEEEecCCCchh---------hhhhhhhcccCcccceEEEEcccCCcccccCchHHHHHHHHHHccC
Confidence 2499999999987322 22333333332 4689999999999999999999999999999863
No 72
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=99.66 E-value=1.5e-15 Score=133.49 Aligned_cols=105 Identities=18% Similarity=0.169 Sum_probs=81.6
Q ss_pred CCCCeEEEEcCCCCCh--hhHHH-HHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHHHHHHHHHHHc------CC
Q 045335 67 PDPPTAVLLHGILGSR--KNWGT-FARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTALDVLKLVAQL------RI 135 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~--~~~~~-~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a~dl~~~l~~l------~~ 135 (339)
+++|++|+||||+++. ..|.. +.+.|....+.++||++|++|+|.+..+ ......+++++.++++.| ++
T Consensus 39 ~~~ptvIlIHG~~~s~~~~~w~~~l~~al~~~~~d~nVI~VDw~g~g~s~y~~a~~~t~~vg~~la~lI~~L~~~~gl~l 118 (442)
T TIGR03230 39 HETKTFIVIHGWTVTGMFESWVPKLVAALYEREPSANVIVVDWLSRAQQHYPTSAAYTKLVGKDVAKFVNWMQEEFNYPW 118 (442)
T ss_pred CCCCeEEEECCCCcCCcchhhHHHHHHHHHhccCCCEEEEEECCCcCCCCCccccccHHHHHHHHHHHHHHHHHhhCCCC
Confidence 3689999999999764 45765 5555543222469999999999988533 234467777777777765 46
Q ss_pred CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
++++||||||||.+|..++.++|+ +|.++++++++.
T Consensus 119 ~~VhLIGHSLGAhIAg~ag~~~p~---rV~rItgLDPAg 154 (442)
T TIGR03230 119 DNVHLLGYSLGAHVAGIAGSLTKH---KVNRITGLDPAG 154 (442)
T ss_pred CcEEEEEECHHHHHHHHHHHhCCc---ceeEEEEEcCCC
Confidence 899999999999999999999998 778999999873
No 73
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=99.66 E-value=2.4e-15 Score=124.33 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=88.3
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHh-CCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC-ceEEEEEchhH
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARA-YPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRIT-PRVLVGHSFGG 147 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~-~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~-~~~lvGhS~Gg 147 (339)
++|+|+|+.+++...|.++++.|... + .|+.++.+|.+....+..+++++|+...+.|.....+ ++.|+|||+||
T Consensus 1 ~~lf~~p~~gG~~~~y~~la~~l~~~~~---~v~~i~~~~~~~~~~~~~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg 77 (229)
T PF00975_consen 1 RPLFCFPPAGGSASSYRPLARALPDDVI---GVYGIEYPGRGDDEPPPDSIEELASRYAEAIRARQPEGPYVLAGWSFGG 77 (229)
T ss_dssp -EEEEESSTTCSGGGGHHHHHHHTTTEE---EEEEECSTTSCTTSHEESSHHHHHHHHHHHHHHHTSSSSEEEEEETHHH
T ss_pred CeEEEEcCCccCHHHHHHHHHhCCCCeE---EEEEEecCCCCCCCCCCCCHHHHHHHHHHHhhhhCCCCCeeehccCccH
Confidence 47999999999999999999999986 5 9999999999966667799999999999988877655 99999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
.+|+++|.+.-+....+..++++|+.+
T Consensus 78 ~lA~E~A~~Le~~G~~v~~l~liD~~~ 104 (229)
T PF00975_consen 78 ILAFEMARQLEEAGEEVSRLILIDSPP 104 (229)
T ss_dssp HHHHHHHHHHHHTT-SESEEEEESCSS
T ss_pred HHHHHHHHHHHHhhhccCceEEecCCC
Confidence 999999987655443577899999764
No 74
>PLN00021 chlorophyllase
Probab=99.65 E-value=5.5e-15 Score=126.16 Aligned_cols=106 Identities=17% Similarity=0.177 Sum_probs=76.8
Q ss_pred CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHH---HHHHHHHHHHH-------cC
Q 045335 65 SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVAS---TALDVLKLVAQ-------LR 134 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~---~a~dl~~~l~~-------l~ 134 (339)
..+..|+|||+||++.+...|..+++.|+++ ||.|+++|++|++.+. ....+++ ..+++.+.++. .+
T Consensus 48 ~~g~~PvVv~lHG~~~~~~~y~~l~~~Las~--G~~VvapD~~g~~~~~-~~~~i~d~~~~~~~l~~~l~~~l~~~~~~d 124 (313)
T PLN00021 48 EAGTYPVLLFLHGYLLYNSFYSQLLQHIASH--GFIVVAPQLYTLAGPD-GTDEIKDAAAVINWLSSGLAAVLPEGVRPD 124 (313)
T ss_pred CCCCCCEEEEECCCCCCcccHHHHHHHHHhC--CCEEEEecCCCcCCCC-chhhHHHHHHHHHHHHhhhhhhcccccccC
Confidence 3345799999999999999999999999987 8899999999975432 1222332 22223222222 23
Q ss_pred CCceEEEEEchhHHHHHHHHHHccCCC--CCCceEEEEecc
Q 045335 135 ITPRVLVGHSFGGKVVLSMVEQAAKPL--ARPVRVWVLDAT 173 (339)
Q Consensus 135 ~~~~~lvGhS~Gg~ia~~~a~~~p~~~--~~v~~lv~l~~~ 173 (339)
.++++|+|||+||.+++.+|.++++.. .++.+++.+++.
T Consensus 125 ~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv 165 (313)
T PLN00021 125 LSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPV 165 (313)
T ss_pred hhheEEEEECcchHHHHHHHhhccccccccceeeEEeeccc
Confidence 467999999999999999999998642 246677777664
No 75
>KOG1552 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.64 E-value=9.7e-15 Score=116.43 Aligned_cols=188 Identities=12% Similarity=0.089 Sum_probs=124.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH---HHHH-cC-CCceEEEE
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK---LVAQ-LR-ITPRVLVG 142 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~---~l~~-l~-~~~~~lvG 142 (339)
..+++++.||...+......+.-.|.... +++++++|..|+|.|...+... ...+|+.+ .|++ .| .++++|+|
T Consensus 59 ~~~~lly~hGNa~Dlgq~~~~~~~l~~~l-n~nv~~~DYSGyG~S~G~psE~-n~y~Di~avye~Lr~~~g~~~~Iil~G 136 (258)
T KOG1552|consen 59 AHPTLLYSHGNAADLGQMVELFKELSIFL-NCNVVSYDYSGYGRSSGKPSER-NLYADIKAVYEWLRNRYGSPERIILYG 136 (258)
T ss_pred cceEEEEcCCcccchHHHHHHHHHHhhcc-cceEEEEecccccccCCCcccc-cchhhHHHHHHHHHhhcCCCceEEEEE
Confidence 45899999999777666666777777755 6799999999999996544322 33333333 3333 32 57899999
Q ss_pred EchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHH
Q 045335 143 HSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQ 222 (339)
Q Consensus 143 hS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (339)
+|+|...++.+|++.| +.++|+.++-. .. .+.+. ....
T Consensus 137 ~SiGt~~tv~Lasr~~-----~~alVL~SPf~-S~-------------~rv~~-----------------~~~~------ 174 (258)
T KOG1552|consen 137 QSIGTVPTVDLASRYP-----LAAVVLHSPFT-SG-------------MRVAF-----------------PDTK------ 174 (258)
T ss_pred ecCCchhhhhHhhcCC-----cceEEEeccch-hh-------------hhhhc-----------------cCcc------
Confidence 9999999999999997 22565554321 00 00000 0000
Q ss_pred HHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHH
Q 045335 223 WVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAV 302 (339)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~ 302 (339)
.. +.++ .+. ..+.+..++ +|||+++|+.| ++++.....++.+
T Consensus 175 ---------------~~--~~~d---------~f~---~i~kI~~i~--~PVLiiHgtdD-------evv~~sHg~~Lye 216 (258)
T KOG1552|consen 175 ---------------TT--YCFD---------AFP---NIEKISKIT--CPVLIIHGTDD-------EVVDFSHGKALYE 216 (258)
T ss_pred ---------------eE--Eeec---------ccc---ccCcceecc--CCEEEEecccC-------ceecccccHHHHH
Confidence 00 0000 000 023344555 89999999998 7888888888888
Q ss_pred hCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 303 DGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 303 ~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
......+-..+.|+||.-. +...++.+.+..|+..
T Consensus 217 ~~k~~~epl~v~g~gH~~~-~~~~~yi~~l~~f~~~ 251 (258)
T KOG1552|consen 217 RCKEKVEPLWVKGAGHNDI-ELYPEYIEHLRRFISS 251 (258)
T ss_pred hccccCCCcEEecCCCccc-ccCHHHHHHHHHHHHH
Confidence 8645568899999999875 5666678888888753
No 76
>KOG2565 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=99.62 E-value=4e-14 Score=117.47 Aligned_cols=116 Identities=16% Similarity=0.145 Sum_probs=97.0
Q ss_pred EeeeCeeEEEeeccCCCCC---CCCeEEEEcCCCCChhhHHHHHHHHHHh--CC-----CceEEEEeeCCCCCCCC---C
Q 045335 49 DLIQGTLVRWSSMMDKSIP---DPPTAVLLHGILGSRKNWGTFARRLARA--YP-----TWQTCDVMVIPHQSRKG---G 115 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~---~~~~vv~lHG~~~~~~~~~~~~~~L~~~--~~-----g~~vi~~D~~G~G~S~~---~ 115 (339)
+.+.|-+++|...-+...+ .-.||+++|||+++-..|..+++.|.+. +. -|+||++.+||+|.|+. .
T Consensus 129 TeIeGL~iHFlhvk~p~~k~~k~v~PlLl~HGwPGsv~EFykfIPlLT~p~~hg~~~d~~FEVI~PSlPGygwSd~~sk~ 208 (469)
T KOG2565|consen 129 TEIEGLKIHFLHVKPPQKKKKKKVKPLLLLHGWPGSVREFYKFIPLLTDPKRHGNESDYAFEVIAPSLPGYGWSDAPSKT 208 (469)
T ss_pred hhhcceeEEEEEecCCccccCCcccceEEecCCCchHHHHHhhhhhhcCccccCCccceeEEEeccCCCCcccCcCCccC
Confidence 4678888888776553222 2248999999999999999999999765 10 38999999999999954 4
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceE
Q 045335 116 LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRV 167 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~l 167 (339)
.++....|.-+..+|-.||..++.|-|-.||..|+..+|..+|+ +|.++
T Consensus 209 GFn~~a~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPe---nV~Gl 257 (469)
T KOG2565|consen 209 GFNAAATARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPE---NVLGL 257 (469)
T ss_pred CccHHHHHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcch---hhhHh
Confidence 58899999999999999999999999999999999999999999 55554
No 77
>PLN02442 S-formylglutathione hydrolase
Probab=99.61 E-value=1e-13 Score=117.66 Aligned_cols=118 Identities=17% Similarity=0.141 Sum_probs=80.0
Q ss_pred eCeeEEEeeccCCC--CCCCCeEEEEcCCCCChhhHHHHH--HHHHHhCCCceEEEEeeCCCCC-----CC---------
Q 045335 52 QGTLVRWSSMMDKS--IPDPPTAVLLHGILGSRKNWGTFA--RRLARAYPTWQTCDVMVIPHQS-----RK--------- 113 (339)
Q Consensus 52 ~g~~l~~~~~g~~~--~~~~~~vv~lHG~~~~~~~~~~~~--~~L~~~~~g~~vi~~D~~G~G~-----S~--------- 113 (339)
-+..+.|..+-+.. ...-|+|+|+||++++...|.... ..+.... |+.|+.+|..++|. +.
T Consensus 28 l~~~~~~~vy~P~~~~~~~~Pvv~~lHG~~~~~~~~~~~~~~~~~~~~~-g~~Vv~pd~~~~g~~~~~~~~~~~~~~~~~ 106 (283)
T PLN02442 28 LGCSMTFSVYFPPASDSGKVPVLYWLSGLTCTDENFIQKSGAQRAAAAR-GIALVAPDTSPRGLNVEGEADSWDFGVGAG 106 (283)
T ss_pred cCCceEEEEEcCCcccCCCCCEEEEecCCCcChHHHHHhhhHHHHHhhc-CeEEEecCCCCCCCCCCCCccccccCCCcc
Confidence 45666776664432 224689999999999988775432 2333333 89999999887661 10
Q ss_pred ------CC--------CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 114 ------GG--------LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 114 ------~~--------~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
.+ .+-.+++.+.+.+.++.++.++++|+||||||..|+.++.++|+ .+.+++.+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~---~~~~~~~~~~~ 177 (283)
T PLN02442 107 FYLNATQEKWKNWRMYDYVVKELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPD---KYKSVSAFAPI 177 (283)
T ss_pred eeeccccCCCcccchhhhHHHHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCch---hEEEEEEECCc
Confidence 00 11134444555555556677889999999999999999999999 55577766554
No 78
>KOG4391 consensus Predicted alpha/beta hydrolase BEM46 [General function prediction only]
Probab=99.60 E-value=1.8e-14 Score=110.87 Aligned_cols=220 Identities=14% Similarity=0.107 Sum_probs=138.8
Q ss_pred cceeEEeeeCeeEE-EeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC--CCHH
Q 045335 44 GVLAYDLIQGTLVR-WSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL--TTVA 120 (339)
Q Consensus 44 ~~~~~~~~~g~~l~-~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~--~~~~ 120 (339)
.++...+.|...+. |... + ..+.|+++.+||..++.....+++.-+-.++ +.+|+.++.||+|.|...+ ..+.
T Consensus 55 e~i~l~T~D~vtL~a~~~~-~--E~S~pTlLyfh~NAGNmGhr~~i~~~fy~~l-~mnv~ivsYRGYG~S~GspsE~GL~ 130 (300)
T KOG4391|consen 55 ERIELRTRDKVTLDAYLML-S--ESSRPTLLYFHANAGNMGHRLPIARVFYVNL-KMNVLIVSYRGYGKSEGSPSEEGLK 130 (300)
T ss_pred eEEEEEcCcceeEeeeeec-c--cCCCceEEEEccCCCcccchhhHHHHHHHHc-CceEEEEEeeccccCCCCcccccee
Confidence 34445556666665 4333 2 2379999999999999988888888887777 7899999999999995433 2333
Q ss_pred HHHHHHHHHH-HH--cCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcC
Q 045335 121 STALDVLKLV-AQ--LRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKL 197 (339)
Q Consensus 121 ~~a~dl~~~l-~~--l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (339)
.-++.+.+.+ .. +...+++|.|-|+||++|+.+|+..-+ ++.++++-+.-.... ......+
T Consensus 131 lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~---ri~~~ivENTF~SIp----------~~~i~~v--- 194 (300)
T KOG4391|consen 131 LDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSD---RISAIIVENTFLSIP----------HMAIPLV--- 194 (300)
T ss_pred ccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchh---heeeeeeechhccch----------hhhhhee---
Confidence 2333333322 22 233679999999999999999999888 666776654421110 0000000
Q ss_pred CccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEE
Q 045335 198 PKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFL 277 (339)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i 277 (339)
.+-.... +..+..++... .+ ..+. .+.+|.|+|
T Consensus 195 ---~p~~~k~------------i~~lc~kn~~~---------------------S~---------~ki~--~~~~P~LFi 227 (300)
T KOG4391|consen 195 ---FPFPMKY------------IPLLCYKNKWL---------------------SY---------RKIG--QCRMPFLFI 227 (300)
T ss_pred ---ccchhhH------------HHHHHHHhhhc---------------------ch---------hhhc--cccCceEEe
Confidence 0000000 01111110000 00 1111 234899999
Q ss_pred eccchhhhhhhhhHHHHHHHHHHHHhCC-CCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 278 KAERSLHRWALEDIQRIHAAEELAVDGG-GGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 278 ~g~~d~~~~g~~d~~~~~~~~~~~~~~~-~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.|.+| +++|+..++++.+.+. ...++.++|++.|.--+- -+...++|.+||.+
T Consensus 228 SGlkD-------elVPP~~Mr~Ly~~c~S~~Krl~eFP~gtHNDT~i-~dGYfq~i~dFlaE 281 (300)
T KOG4391|consen 228 SGLKD-------ELVPPVMMRQLYELCPSRTKRLAEFPDGTHNDTWI-CDGYFQAIEDFLAE 281 (300)
T ss_pred ecCcc-------ccCCcHHHHHHHHhCchhhhhheeCCCCccCceEE-eccHHHHHHHHHHH
Confidence 99998 7899999999988752 345899999999976543 35567888888864
No 79
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=99.59 E-value=6e-14 Score=131.44 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=142.2
Q ss_pred CCCcceeEEeeeCeeEEEeeccCCCCC-CC--CeEEEEcCCCCChh--hHHHHHHHHHHhCCCceEEEEeeCCCC---CC
Q 045335 41 EPSGVLAYDLIQGTLVRWSSMMDKSIP-DP--PTAVLLHGILGSRK--NWGTFARRLARAYPTWQTCDVMVIPHQ---SR 112 (339)
Q Consensus 41 ~~~~~~~~~~~~g~~l~~~~~g~~~~~-~~--~~vv~lHG~~~~~~--~~~~~~~~L~~~~~g~~vi~~D~~G~G---~S 112 (339)
..+..+.|...||..+....+.+.+.. .+ |+||++||.+.... .|....+.|+.. ||.|+.++.||-+ +.
T Consensus 363 ~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~~~~q~~~~~--G~~V~~~n~RGS~GyG~~ 440 (620)
T COG1506 363 AEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFNPEIQVLASA--GYAVLAPNYRGSTGYGRE 440 (620)
T ss_pred CCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccchhhHHHhcC--CeEEEEeCCCCCCccHHH
Confidence 356778888889988887766654422 22 79999999986654 466777888887 9999999999653 22
Q ss_pred -------CCCCCCHHHHHHHHHHHHHHcCC---CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCC
Q 045335 113 -------KGGLTTVASTALDVLKLVAQLRI---TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGD 182 (339)
Q Consensus 113 -------~~~~~~~~~~a~dl~~~l~~l~~---~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~ 182 (339)
......++|+.+.+. ++.+.+. +++++.|||+||..++..+.+.|. .++.+...+.....
T Consensus 441 F~~~~~~~~g~~~~~D~~~~~~-~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~----f~a~~~~~~~~~~~----- 510 (620)
T COG1506 441 FADAIRGDWGGVDLEDLIAAVD-ALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR----FKAAVAVAGGVDWL----- 510 (620)
T ss_pred HHHhhhhccCCccHHHHHHHHH-HHHhCCCcChHHeEEeccChHHHHHHHHHhcCch----hheEEeccCcchhh-----
Confidence 112356777777777 5555544 479999999999999999998873 22444333221110
Q ss_pred CCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhh
Q 045335 183 GEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLW 262 (339)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (339)
..+.... ..... .......... . +.+.+. .....
T Consensus 511 ---------~~~~~~~------~~~~~-------------~~~~~~~~~~----------~-~~~~~~-------~~sp~ 544 (620)
T COG1506 511 ---------LYFGEST------EGLRF-------------DPEENGGGPP----------E-DREKYE-------DRSPI 544 (620)
T ss_pred ---------hhccccc------hhhcC-------------CHHHhCCCcc----------c-ChHHHH-------hcChh
Confidence 0000000 00000 0000000000 0 001010 01111
Q ss_pred hhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhC---CCCeeEEEecCCCccccc-cChhHHHHHHHHhhhc
Q 045335 263 KLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDG---GGGVEMHVLEDAGHWVHA-DNPDGLFRILTSSFEG 338 (339)
Q Consensus 263 ~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~---~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl~~ 338 (339)
....++. +|+|+|+|+.| +.++.++..++...+ ..+++++++|+.||.+-- ++-..+.+.+.+|+++
T Consensus 545 ~~~~~i~--~P~LliHG~~D-------~~v~~~q~~~~~~aL~~~g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~~ 615 (620)
T COG1506 545 FYADNIK--TPLLLIHGEED-------DRVPIEQAEQLVDALKRKGKPVELVVFPDEGHGFSRPENRVKVLKEILDWFKR 615 (620)
T ss_pred hhhcccC--CCEEEEeecCC-------ccCChHHHHHHHHHHHHcCceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHHH
Confidence 2233444 89999999998 667777776665543 467899999999998876 5566677778887754
No 80
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=99.58 E-value=9.8e-15 Score=122.95 Aligned_cols=114 Identities=17% Similarity=0.169 Sum_probs=82.3
Q ss_pred CeeEEEeeccCCCCCCCCeEEEEcCCCCCh-hhHHHH-HHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHHHHHHH
Q 045335 53 GTLVRWSSMMDKSIPDPPTAVLLHGILGSR-KNWGTF-ARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTALDVLK 128 (339)
Q Consensus 53 g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~-~~~~~~-~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a~dl~~ 128 (339)
+..+.+....+ ++|++|+||||+++. ..|... ...+.... +++|+++|++|++.+..+ ..++..+++++.+
T Consensus 24 ~~~~~~~~f~~----~~p~vilIHG~~~~~~~~~~~~l~~~ll~~~-~~nVi~vD~~~~~~~~y~~a~~~~~~v~~~la~ 98 (275)
T cd00707 24 PSSLKNSNFNP----SRPTRFIIHGWTSSGEESWISDLRKAYLSRG-DYNVIVVDWGRGANPNYPQAVNNTRVVGAELAK 98 (275)
T ss_pred hhhhhhcCCCC----CCCcEEEEcCCCCCCCCcHHHHHHHHHHhcC-CCEEEEEECccccccChHHHHHhHHHHHHHHHH
Confidence 34444444433 589999999999987 677654 44454332 679999999998433211 1345555666666
Q ss_pred HHHHc------CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 129 LVAQL------RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 129 ~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
+++.+ +.++++||||||||.+|..++.++|+ ++.+++.++++.
T Consensus 99 ~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~---~v~~iv~LDPa~ 147 (275)
T cd00707 99 FLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNG---KLGRITGLDPAG 147 (275)
T ss_pred HHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcC---ccceeEEecCCc
Confidence 66554 44789999999999999999999998 788999999873
No 81
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=99.58 E-value=1.1e-12 Score=117.53 Aligned_cols=273 Identities=11% Similarity=0.063 Sum_probs=156.1
Q ss_pred cCccCCCCCcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhH-----HHHHHHHHHhCCCceEEEEeeCCC
Q 045335 35 VGKDVAEPSGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNW-----GTFARRLARAYPTWQTCDVMVIPH 109 (339)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~-----~~~~~~L~~~~~g~~vi~~D~~G~ 109 (339)
+......++.+.-|..---+-++|. +......++|||+++.+-.-...| ..+++.|.++ |++|+++|+++-
T Consensus 183 vG~~~a~TPg~VV~~n~l~eLiqY~--P~te~v~~~PLLIVPp~INK~YIlDL~P~~SlVr~lv~q--G~~VflIsW~nP 258 (560)
T TIGR01839 183 VGKNLATTEGAVVFRNEVLELIQYK--PITEQQHARPLLVVPPQINKFYIFDLSPEKSFVQYCLKN--QLQVFIISWRNP 258 (560)
T ss_pred cCCCCCCCCCceeEECCceEEEEeC--CCCCCcCCCcEEEechhhhhhheeecCCcchHHHHHHHc--CCeEEEEeCCCC
Confidence 3344444555555554444445553 222334578999999998666666 5789999998 999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHc----CCCceEEEEEchhHHHHHH----HHHHccCCCCCCceEEEEeccCCCCcCCC
Q 045335 110 QSRKGGLTTVASTALDVLKLVAQL----RITPRVLVGHSFGGKVVLS----MVEQAAKPLARPVRVWVLDATPGKVRAGG 181 (339)
Q Consensus 110 G~S~~~~~~~~~~a~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~----~a~~~p~~~~~v~~lv~l~~~~~~~~~~~ 181 (339)
+.+. ...++++|++.+.+.++.. +.+++.++|+|+||.++.. +|+++++. +|+.++++.+..-+.....
T Consensus 259 ~~~~-r~~~ldDYv~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~--~V~sltllatplDf~~~g~ 335 (560)
T TIGR01839 259 DKAH-REWGLSTYVDALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALGQLR--KVNSLTYLVSLLDSTMESP 335 (560)
T ss_pred Chhh-cCCCHHHHHHHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcCCCC--ceeeEEeeecccccCCCCc
Confidence 7765 4589999998888888776 5688999999999999997 78888852 5778888877644332211
Q ss_pred CCCCChHHHHHHhhc--CCccccChHHHHHHHHHcCCchHHHHHHHHhc-cCCCCCCCCCCccceech-----HHHHHHH
Q 045335 182 DGEDHPAELIHFLSK--LPKEVISKQEVVNALIQQGFSKDVAQWVVTNL-KPAASFGASSSFSWVFDL-----EGIAEMY 253 (339)
Q Consensus 182 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----~~~~~~~ 253 (339)
............+.. ..........+...|.--.....+..++..+. ...... ...-..|..+. .....++
T Consensus 336 l~~f~~e~~~~~~e~~~~~~G~lpg~~ma~~F~~LrP~dliw~y~v~~yllg~~p~-~fdll~Wn~D~t~lPg~~~~e~l 414 (560)
T TIGR01839 336 AALFADEQTLEAAKRRSYQAGVLDGSEMAKVFAWMRPNDLIWNYWVNNYLLGNEPP-AFDILYWNNDTTRLPAAFHGDLL 414 (560)
T ss_pred chhccChHHHHHHHHHHHhcCCcCHHHHHHHHHhcCchhhhHHHHHHHhhcCCCcc-hhhHHHHhCcCccchHHHHHHHH
Confidence 111111111111110 01112222333332322222222222222222 211111 11222332221 1112222
Q ss_pred hhhhhhhhh-----------hhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccc
Q 045335 254 QSYDETNLW-----------KLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHA 322 (339)
Q Consensus 254 ~~~~~~~~~-----------~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~ 322 (339)
..+.+..+. -.+.+|+ +|++.+.|+.| .++|.+......+.+..+.+++..+ +||..=+
T Consensus 415 ~ly~~N~L~~pG~l~v~G~~idL~~I~--~Pvl~va~~~D-------HIvPw~s~~~~~~l~gs~~~fvl~~-gGHIggi 484 (560)
T TIGR01839 415 DMFKSNPLTRPDALEVCGTPIDLKKVK--CDSFSVAGTND-------HITPWDAVYRSALLLGGKRRFVLSN-SGHIQSI 484 (560)
T ss_pred HHHhcCCCCCCCCEEECCEEechhcCC--CCeEEEecCcC-------CcCCHHHHHHHHHHcCCCeEEEecC-CCccccc
Confidence 111111111 1345555 99999999997 5889999999988765567777775 4997655
Q ss_pred cCh
Q 045335 323 DNP 325 (339)
Q Consensus 323 e~p 325 (339)
=+|
T Consensus 485 vnp 487 (560)
T TIGR01839 485 LNP 487 (560)
T ss_pred cCC
Confidence 443
No 82
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=99.55 E-value=2.6e-12 Score=106.21 Aligned_cols=104 Identities=20% Similarity=0.280 Sum_probs=67.3
Q ss_pred CCCCCCeEEEEcCCCCCh-hhH-HHHHHHHHHhCCCceEEEEeeCCCCCCCC--CC-CCHHHHHHHHHHHHHHc----CC
Q 045335 65 SIPDPPTAVLLHGILGSR-KNW-GTFARRLARAYPTWQTCDVMVIPHQSRKG--GL-TTVASTALDVLKLVAQL----RI 135 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~-~~~-~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--~~-~~~~~~a~dl~~~l~~l----~~ 135 (339)
.++.+|.||++||+.++. +.| +.+.+.+.++ ||.+++++.|||+.+.- +. |+.-+ .+|+..+++.+ ..
T Consensus 71 ~~~~~P~vVl~HGL~G~s~s~y~r~L~~~~~~r--g~~~Vv~~~Rgcs~~~n~~p~~yh~G~-t~D~~~~l~~l~~~~~~ 147 (345)
T COG0429 71 RAAKKPLVVLFHGLEGSSNSPYARGLMRALSRR--GWLVVVFHFRGCSGEANTSPRLYHSGE-TEDIRFFLDWLKARFPP 147 (345)
T ss_pred cccCCceEEEEeccCCCCcCHHHHHHHHHHHhc--CCeEEEEecccccCCcccCcceecccc-hhHHHHHHHHHHHhCCC
Confidence 445678999999998765 344 5567778877 89999999999998842 21 22111 14555554444 55
Q ss_pred CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
.++..||.|+||.....+.....+.. .+.+.+.++.
T Consensus 148 r~~~avG~SLGgnmLa~ylgeeg~d~-~~~aa~~vs~ 183 (345)
T COG0429 148 RPLYAVGFSLGGNMLANYLGEEGDDL-PLDAAVAVSA 183 (345)
T ss_pred CceEEEEecccHHHHHHHHHhhccCc-ccceeeeeeC
Confidence 78999999999944444444433322 3445555443
No 83
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=99.55 E-value=5.4e-14 Score=131.13 Aligned_cols=114 Identities=25% Similarity=0.227 Sum_probs=93.5
Q ss_pred CCcceeEEeeeCeeEEEeeccCCCC------CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC
Q 045335 42 PSGVLAYDLIQGTLVRWSSMMDKSI------PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG 115 (339)
Q Consensus 42 ~~~~~~~~~~~g~~l~~~~~g~~~~------~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~ 115 (339)
..++..+...++.+++|...|.... ...|+|||+||++++...|..+.+.|.+. ||+|+++|+||||.|...
T Consensus 416 ~~vp~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~lA~~La~~--Gy~VIaiDlpGHG~S~~~ 493 (792)
T TIGR03502 416 ENVPVLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALAFAGTLAAA--GVATIAIDHPLHGARSFD 493 (792)
T ss_pred cccceEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHHHHHHHHhC--CcEEEEeCCCCCCccccc
Confidence 4467788888999999888765321 12368999999999999999999999876 789999999999988322
Q ss_pred -------------------------CCCHHHHHHHHHHHHHHcC----------------CCceEEEEEchhHHHHHHHH
Q 045335 116 -------------------------LTTVASTALDVLKLVAQLR----------------ITPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 116 -------------------------~~~~~~~a~dl~~~l~~l~----------------~~~~~lvGhS~Gg~ia~~~a 154 (339)
..+++..+.|+..+...++ ..+++++||||||.++..++
T Consensus 494 ~~~~~~~a~~~~~~~y~Nl~~l~~aRDn~rQ~v~Dll~L~~~l~~~~~~~~~~~~~~~~~~~~V~~lGHSLGgiig~~~~ 573 (792)
T TIGR03502 494 ANASGVNATNANVLAYMNLASLLVARDNLRQSILDLLGLRLSLNGSALAGAPLSGINVIDGSKVSFLGHSLGGIVGTSFI 573 (792)
T ss_pred cccccccccccCccceeccccccccccCHHHHHHHHHHHHHHHhcccccccccccccCCCCCcEEEEecCHHHHHHHHHH
Confidence 1278899999999888876 24899999999999999999
Q ss_pred HHc
Q 045335 155 EQA 157 (339)
Q Consensus 155 ~~~ 157 (339)
...
T Consensus 574 ~~a 576 (792)
T TIGR03502 574 AYA 576 (792)
T ss_pred Hhc
Confidence 753
No 84
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=99.52 E-value=7.9e-12 Score=107.00 Aligned_cols=232 Identities=14% Similarity=0.077 Sum_probs=126.4
Q ss_pred ceeEEeeeCeeEE-EeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC-CCCC------C-
Q 045335 45 VLAYDLIQGTLVR-WSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ-SRKG------G- 115 (339)
Q Consensus 45 ~~~~~~~~g~~l~-~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G-~S~~------~- 115 (339)
.+.|...+|..++ |...+....+.-|.||.+||.++....|...+. ++.. |+-|+.+|.||+| .+.. .
T Consensus 58 ~v~f~s~~g~~V~g~l~~P~~~~~~~Pavv~~hGyg~~~~~~~~~~~-~a~~--G~~vl~~d~rGqg~~~~d~~~~~~~~ 134 (320)
T PF05448_consen 58 DVSFESFDGSRVYGWLYRPKNAKGKLPAVVQFHGYGGRSGDPFDLLP-WAAA--GYAVLAMDVRGQGGRSPDYRGSSGGT 134 (320)
T ss_dssp EEEEEEGGGEEEEEEEEEES-SSSSEEEEEEE--TT--GGGHHHHHH-HHHT--T-EEEEE--TTTSSSS-B-SSBSSS-
T ss_pred EEEEEccCCCEEEEEEEecCCCCCCcCEEEEecCCCCCCCCcccccc-cccC--CeEEEEecCCCCCCCCCCccccCCCC
Confidence 5667777888887 444444244556789999999999877766543 5555 8899999999999 2310 0
Q ss_pred --------------CCCHHHHHHHHHHHHHHc------CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 116 --------------LTTVASTALDVLKLVAQL------RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 116 --------------~~~~~~~a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
.+-+..+..|....++.+ +.+++.+.|.|.||.+++.+|+..| +|.+.+...+..+
T Consensus 135 ~~g~~~~g~~~~~e~~yyr~~~~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~----rv~~~~~~vP~l~ 210 (320)
T PF05448_consen 135 LKGHITRGIDDNPEDYYYRRVYLDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDP----RVKAAAADVPFLC 210 (320)
T ss_dssp SSSSTTTTTTS-TTT-HHHHHHHHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSS----T-SEEEEESESSS
T ss_pred CccHHhcCccCchHHHHHHHHHHHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCc----cccEEEecCCCcc
Confidence 011233445555555543 2257899999999999999999876 5556665544321
Q ss_pred CCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhh
Q 045335 176 KVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQS 255 (339)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (339)
.. ......- .......++..++...-.. .+.....+..
T Consensus 211 d~----------~~~~~~~-----------------~~~~~y~~~~~~~~~~d~~---------------~~~~~~v~~~ 248 (320)
T PF05448_consen 211 DF----------RRALELR-----------------ADEGPYPEIRRYFRWRDPH---------------HEREPEVFET 248 (320)
T ss_dssp SH----------HHHHHHT-------------------STTTHHHHHHHHHHSCT---------------HCHHHHHHHH
T ss_pred ch----------hhhhhcC-----------------CccccHHHHHHHHhccCCC---------------cccHHHHHHH
Confidence 11 1111100 0011112223332211000 1111112222
Q ss_pred hhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHH-HHHHHH
Q 045335 256 YDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGL-FRILTS 334 (339)
Q Consensus 256 ~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~-~~~i~~ 334 (339)
+.-.|.......++ +|+++..|-.| ..+|+.......+.+....++.++|..||... +++ .+...+
T Consensus 249 L~Y~D~~nfA~ri~--~pvl~~~gl~D-------~~cPP~t~fA~yN~i~~~K~l~vyp~~~He~~----~~~~~~~~~~ 315 (320)
T PF05448_consen 249 LSYFDAVNFARRIK--CPVLFSVGLQD-------PVCPPSTQFAAYNAIPGPKELVVYPEYGHEYG----PEFQEDKQLN 315 (320)
T ss_dssp HHTT-HHHHGGG----SEEEEEEETT--------SSS-HHHHHHHHCC--SSEEEEEETT--SSTT----HHHHHHHHHH
T ss_pred HhhhhHHHHHHHcC--CCEEEEEecCC-------CCCCchhHHHHHhccCCCeeEEeccCcCCCch----hhHHHHHHHH
Confidence 22223334444555 99999999887 68899999988888755789999999999553 344 566667
Q ss_pred hhhc
Q 045335 335 SFEG 338 (339)
Q Consensus 335 fl~~ 338 (339)
||.+
T Consensus 316 ~l~~ 319 (320)
T PF05448_consen 316 FLKE 319 (320)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 7653
No 85
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=99.47 E-value=4e-12 Score=103.51 Aligned_cols=103 Identities=15% Similarity=0.014 Sum_probs=70.3
Q ss_pred CCCeEEEEcCCCCChhhHHH--HHHHHHHhCCCceEEEEeeCCCCCCCCC------------CCCHHHHHHHHHHHHHHc
Q 045335 68 DPPTAVLLHGILGSRKNWGT--FARRLARAYPTWQTCDVMVIPHQSRKGG------------LTTVASTALDVLKLVAQL 133 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~--~~~~L~~~~~g~~vi~~D~~G~G~S~~~------------~~~~~~~a~dl~~~l~~l 133 (339)
..|.||++||.+.+...|.. -...++++. ||.|+++|.+|++.+... .....++.+.+..+.+..
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~~~~~~~a~~~-g~~Vv~Pd~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 90 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVIDWGWKAAADRY-GFVLVAPEQTSYNSSNNCWDWFFTHHRARGTGEVESLHQLIDAVKANY 90 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhhcChHHHHHhC-CeEEEecCCcCccccCCCCCCCCccccCCCCccHHHHHHHHHHHHHhc
Confidence 57899999999998877652 133455554 899999999998744210 011222222333333333
Q ss_pred CC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 134 RI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 134 ~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
++ ++++|+|||+||.+++.++.++|+ .+.+++.+++.+
T Consensus 91 ~id~~~i~l~G~S~Gg~~a~~~a~~~p~---~~~~~~~~~g~~ 130 (212)
T TIGR01840 91 SIDPNRVYVTGLSAGGGMTAVLGCTYPD---VFAGGASNAGLP 130 (212)
T ss_pred CcChhheEEEEECHHHHHHHHHHHhCch---hheEEEeecCCc
Confidence 33 589999999999999999999999 555777776553
No 86
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=99.46 E-value=5.5e-12 Score=102.89 Aligned_cols=189 Identities=16% Similarity=0.107 Sum_probs=103.5
Q ss_pred HHHHHHHHHHhCCCceEEEEeeCCCCCCC-------CCC---CCHHHHHHHHHHHHHHc--CCCceEEEEEchhHHHHHH
Q 045335 85 WGTFARRLARAYPTWQTCDVMVIPHQSRK-------GGL---TTVASTALDVLKLVAQL--RITPRVLVGHSFGGKVVLS 152 (339)
Q Consensus 85 ~~~~~~~L~~~~~g~~vi~~D~~G~G~S~-------~~~---~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~ 152 (339)
|......|++. ||.|+.+|.||.+... ... ..++|..+-+..+++.- +.+++.++|||+||.+++.
T Consensus 3 f~~~~~~la~~--Gy~v~~~~~rGs~g~g~~~~~~~~~~~~~~~~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~ 80 (213)
T PF00326_consen 3 FNWNAQLLASQ--GYAVLVPNYRGSGGYGKDFHEAGRGDWGQADVDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALL 80 (213)
T ss_dssp -SHHHHHHHTT--T-EEEEEE-TTSSSSHHHHHHTTTTGTTHHHHHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHH
T ss_pred eeHHHHHHHhC--CEEEEEEcCCCCCccchhHHHhhhccccccchhhHHHHHHHHhccccccceeEEEEcccccccccch
Confidence 44556778777 9999999999987431 111 23344444444444442 2368999999999999999
Q ss_pred HHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHH-HHHHcCCchHHHHHHHHhccCC
Q 045335 153 MVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVN-ALIQQGFSKDVAQWVVTNLKPA 231 (339)
Q Consensus 153 ~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 231 (339)
++.++|+ +++.++..++.......... .. . ... ..........
T Consensus 81 ~~~~~~~---~f~a~v~~~g~~d~~~~~~~-------------------~~-~-~~~~~~~~~~~~~~------------ 124 (213)
T PF00326_consen 81 AATQHPD---RFKAAVAGAGVSDLFSYYGT-------------------TD-I-YTKAEYLEYGDPWD------------ 124 (213)
T ss_dssp HHHHTCC---GSSEEEEESE-SSTTCSBHH-------------------TC-C-HHHGHHHHHSSTTT------------
T ss_pred hhcccce---eeeeeeccceecchhccccc-------------------cc-c-cccccccccCccch------------
Confidence 9999999 55577666554222111000 00 0 000 0000000000
Q ss_pred CCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhC---CCCe
Q 045335 232 ASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDG---GGGV 308 (339)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~---~~~~ 308 (339)
+.+.+. .... ...+..+...+|+|+++|+.| +.+++....++.+++ ..++
T Consensus 125 -------------~~~~~~----~~s~---~~~~~~~~~~~P~li~hG~~D-------~~Vp~~~s~~~~~~L~~~g~~~ 177 (213)
T PF00326_consen 125 -------------NPEFYR----ELSP---ISPADNVQIKPPVLIIHGEND-------PRVPPSQSLRLYNALRKAGKPV 177 (213)
T ss_dssp -------------SHHHHH----HHHH---GGGGGGCGGGSEEEEEEETTB-------SSSTTHHHHHHHHHHHHTTSSE
T ss_pred -------------hhhhhh----hhcc---ccccccccCCCCEEEEccCCC-------CccCHHHHHHHHHHHHhcCCCE
Confidence 011111 0111 011112112389999999998 455555555554432 3569
Q ss_pred eEEEecCCCcccc-ccChhHHHHHHHHhhhc
Q 045335 309 EMHVLEDAGHWVH-ADNPDGLFRILTSSFEG 338 (339)
Q Consensus 309 ~~~~i~~~gH~~~-~e~p~~~~~~i~~fl~~ 338 (339)
+++++|++||... .+...+..+.+.+||++
T Consensus 178 ~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~ 208 (213)
T PF00326_consen 178 ELLIFPGEGHGFGNPENRRDWYERILDFFDK 208 (213)
T ss_dssp EEEEETT-SSSTTSHHHHHHHHHHHHHHHHH
T ss_pred EEEEcCcCCCCCCCchhHHHHHHHHHHHHHH
Confidence 9999999999554 35566788888888864
No 87
>KOG1838 consensus Alpha/beta hydrolase [General function prediction only]
Probab=99.46 E-value=1.5e-11 Score=105.47 Aligned_cols=122 Identities=14% Similarity=0.136 Sum_probs=79.8
Q ss_pred EeeeCeeEEE--eeccCC----CCCCCCeEEEEcCCCCCh-hhH-HHHHHHHHHhCCCceEEEEeeCCCCCCCC--CC--
Q 045335 49 DLIQGTLVRW--SSMMDK----SIPDPPTAVLLHGILGSR-KNW-GTFARRLARAYPTWQTCDVMVIPHQSRKG--GL-- 116 (339)
Q Consensus 49 ~~~~g~~l~~--~~~g~~----~~~~~~~vv~lHG~~~~~-~~~-~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--~~-- 116 (339)
++.||..+.+ ..-+.. +....|.||++||+.+++ +.+ +.++..+.++ ||++++++.||+|.|+- +.
T Consensus 99 ~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YVr~lv~~a~~~--G~r~VVfN~RG~~g~~LtTpr~f 176 (409)
T KOG1838|consen 99 KTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYVRHLVHEAQRK--GYRVVVFNHRGLGGSKLTTPRLF 176 (409)
T ss_pred EeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHHHHHHHHHHhC--CcEEEEECCCCCCCCccCCCcee
Confidence 4456666553 322221 124679999999998765 444 5556666666 89999999999998842 21
Q ss_pred --CCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 117 --TTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 117 --~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
...+|+.+.+..+-+..-..+...+|.||||.+...|..+-.+.- .+.+.+.++.+
T Consensus 177 ~ag~t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~-~l~~a~~v~~P 234 (409)
T KOG1838|consen 177 TAGWTEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNT-PLIAAVAVCNP 234 (409)
T ss_pred ecCCHHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCC-CceeEEEEecc
Confidence 234444444444444445568999999999999999998776643 34455555443
No 88
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=99.45 E-value=6.3e-13 Score=88.82 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=65.7
Q ss_pred CeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC---CCHHHHHHHHHHH
Q 045335 53 GTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL---TTVASTALDVLKL 129 (339)
Q Consensus 53 g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~---~~~~~~a~dl~~~ 129 (339)
|..|+|+.+.+.++ .+.+|+++||++....-|..+++.|+++ ||.|+++|+||||.|.... .+++++++|+..+
T Consensus 1 G~~L~~~~w~p~~~-~k~~v~i~HG~~eh~~ry~~~a~~L~~~--G~~V~~~D~rGhG~S~g~rg~~~~~~~~v~D~~~~ 77 (79)
T PF12146_consen 1 GTKLFYRRWKPENP-PKAVVVIVHGFGEHSGRYAHLAEFLAEQ--GYAVFAYDHRGHGRSEGKRGHIDSFDDYVDDLHQF 77 (79)
T ss_pred CcEEEEEEecCCCC-CCEEEEEeCCcHHHHHHHHHHHHHHHhC--CCEEEEECCCcCCCCCCcccccCCHHHHHHHHHHH
Confidence 56788888877554 5778999999999999999999999998 9999999999999996432 6899999999988
Q ss_pred HH
Q 045335 130 VA 131 (339)
Q Consensus 130 l~ 131 (339)
++
T Consensus 78 ~~ 79 (79)
T PF12146_consen 78 IQ 79 (79)
T ss_pred hC
Confidence 74
No 89
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=99.44 E-value=2.8e-11 Score=101.37 Aligned_cols=106 Identities=19% Similarity=0.282 Sum_probs=88.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhC-CCceEEEEeeCCCCCCCC--------CCCCHHHHHHHHHHHHHHcCC----
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAY-PTWQTCDVMVIPHQSRKG--------GLTTVASTALDVLKLVAQLRI---- 135 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~-~g~~vi~~D~~G~G~S~~--------~~~~~~~~a~dl~~~l~~l~~---- 135 (339)
+..++|++|.++-.+.|..++..|.+.. +.+.|+++.+.||-.++. ..++++++++...++++++-.
T Consensus 2 ~~li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~ish~Gh~~~~~~~~~~~~~~~~sL~~QI~hk~~~i~~~~~~~~~ 81 (266)
T PF10230_consen 2 RPLIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGISHAGHSTSPSNSKFSPNGRLFSLQDQIEHKIDFIKELIPQKNK 81 (266)
T ss_pred cEEEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEecCCCCcCCcccccccCCCCccCHHHHHHHHHHHHHHHhhhhcC
Confidence 4679999999999999999999999884 689999999999976633 358999999998888877632
Q ss_pred --CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 136 --TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 136 --~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
.+++|+|||.|+.+++++..++++...+|.+++++-++.
T Consensus 82 ~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 82 PNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 569999999999999999999993333788888886653
No 90
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=99.44 E-value=2.9e-11 Score=94.92 Aligned_cols=87 Identities=18% Similarity=0.233 Sum_probs=69.6
Q ss_pred EEEEcCCCCChhhHH--HHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHH
Q 045335 72 AVLLHGILGSRKNWG--TFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKV 149 (339)
Q Consensus 72 vv~lHG~~~~~~~~~--~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~i 149 (339)
|+++||+.++..+.. .+.+.+++..+..+++++|++ ...+...+.+.+++++...+.+.|||.||||..
T Consensus 2 ilYlHGF~Ssp~S~Ka~~l~~~~~~~~~~~~~~~p~l~---------~~p~~a~~~l~~~i~~~~~~~~~liGSSlGG~~ 72 (187)
T PF05728_consen 2 ILYLHGFNSSPQSFKAQALKQYFAEHGPDIQYPCPDLP---------PFPEEAIAQLEQLIEELKPENVVLIGSSLGGFY 72 (187)
T ss_pred eEEecCCCCCCCCHHHHHHHHHHHHhCCCceEECCCCC---------cCHHHHHHHHHHHHHhCCCCCeEEEEEChHHHH
Confidence 799999999987764 344566665445577777765 678888899999999988777999999999999
Q ss_pred HHHHHHHccCCCCCCceEEEEecc
Q 045335 150 VLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 150 a~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|..+|.+++- +.|+++++
T Consensus 73 A~~La~~~~~------~avLiNPa 90 (187)
T PF05728_consen 73 ATYLAERYGL------PAVLINPA 90 (187)
T ss_pred HHHHHHHhCC------CEEEEcCC
Confidence 9999999853 33788776
No 91
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=99.43 E-value=2.4e-12 Score=131.94 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceEEEEEchh
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRI-TPRVLVGHSFG 146 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~-~~~~lvGhS~G 146 (339)
++++++|+||++++...|..+.+.|...+ +|+++|++|+|.+....++++++++++.+.++.+.. ++++++|||||
T Consensus 1067 ~~~~l~~lh~~~g~~~~~~~l~~~l~~~~---~v~~~~~~g~~~~~~~~~~l~~la~~~~~~i~~~~~~~p~~l~G~S~G 1143 (1296)
T PRK10252 1067 DGPTLFCFHPASGFAWQFSVLSRYLDPQW---SIYGIQSPRPDGPMQTATSLDEVCEAHLATLLEQQPHGPYHLLGYSLG 1143 (1296)
T ss_pred CCCCeEEecCCCCchHHHHHHHHhcCCCC---cEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHhhCCCCCEEEEEechh
Confidence 35789999999999999999999997765 999999999998766779999999999999988754 58999999999
Q ss_pred HHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 147 GKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 147 g~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
|.+|.++|.+.++...++..++++++.+
T Consensus 1144 g~vA~e~A~~l~~~~~~v~~l~l~~~~~ 1171 (1296)
T PRK10252 1144 GTLAQGIAARLRARGEEVAFLGLLDTWP 1171 (1296)
T ss_pred hHHHHHHHHHHHHcCCceeEEEEecCCC
Confidence 9999999997544333777888887643
No 92
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=99.42 E-value=1.3e-11 Score=100.85 Aligned_cols=180 Identities=17% Similarity=0.135 Sum_probs=100.6
Q ss_pred CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCC------CCC---C-----CCCC------CCHHHHHH
Q 045335 65 SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIP------HQS---R-----KGGL------TTVASTAL 124 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G------~G~---S-----~~~~------~~~~~~a~ 124 (339)
..+..++|||+||+|++...|..+... ....+..++++++-|- .|. + .... ..+++.++
T Consensus 10 ~~~~~~lvi~LHG~G~~~~~~~~~~~~-~~~~~~~~~i~p~ap~~~~~~~~g~~~~~Wf~~~~~~~~~~~~~~~i~~s~~ 88 (216)
T PF02230_consen 10 KGKAKPLVILLHGYGDSEDLFALLAEL-NLALPNTRFISPRAPSRPVTVPGGYRMPAWFDIYDFDPEGPEDEAGIEESAE 88 (216)
T ss_dssp SST-SEEEEEE--TTS-HHHHHHHHHH-HTCSTTEEEEEE---EEE-GGGTT-EEE-SS-BSCSSSSSEB-HHHHHHHHH
T ss_pred CCCCceEEEEECCCCCCcchhHHHHhh-cccCCceEEEeccCCCCCcccccccCCCceeeccCCCcchhhhHHHHHHHHH
Confidence 344688999999999999777655442 2223355777765541 232 1 0011 12444455
Q ss_pred HHHHHHHHc-----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCc
Q 045335 125 DVLKLVAQL-----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPK 199 (339)
Q Consensus 125 dl~~~l~~l-----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (339)
.+.++++.. ..++++|.|.|.||++++.++.++|+ .+.+++.+++.......
T Consensus 89 ~l~~li~~~~~~~i~~~ri~l~GFSQGa~~al~~~l~~p~---~~~gvv~lsG~~~~~~~-------------------- 145 (216)
T PF02230_consen 89 RLDELIDEEVAYGIDPSRIFLGGFSQGAAMALYLALRYPE---PLAGVVALSGYLPPESE-------------------- 145 (216)
T ss_dssp HHHHHHHHHHHTT--GGGEEEEEETHHHHHHHHHHHCTSS---TSSEEEEES---TTGCC--------------------
T ss_pred HHHHHHHHHHHcCCChhheehhhhhhHHHHHHHHHHHcCc---CcCEEEEeecccccccc--------------------
Confidence 566666542 33579999999999999999999999 66688888654211000
Q ss_pred cccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEec
Q 045335 200 EVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKA 279 (339)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g 279 (339)
. . ....... .+|+++++|
T Consensus 146 ----------------~-~--------------------------------------------~~~~~~~-~~pi~~~hG 163 (216)
T PF02230_consen 146 ----------------L-E--------------------------------------------DRPEALA-KTPILIIHG 163 (216)
T ss_dssp ----------------C-H--------------------------------------------CCHCCCC-TS-EEEEEE
T ss_pred ----------------c-c--------------------------------------------ccccccC-CCcEEEEec
Confidence 0 0 0000011 289999999
Q ss_pred cchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 280 ERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 280 ~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+.|.++ .....+...+..++...++++++++|.||.+. .+..+.+.+||++
T Consensus 164 ~~D~vv----p~~~~~~~~~~L~~~~~~v~~~~~~g~gH~i~----~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 164 DEDPVV----PFEWAEKTAEFLKAAGANVEFHEYPGGGHEIS----PEELRDLREFLEK 214 (216)
T ss_dssp TT-SSS----THHHHHHHHHHHHCTT-GEEEEEETT-SSS------HHHHHHHHHHHHH
T ss_pred CCCCcc----cHHHHHHHHHHHHhcCCCEEEEEcCCCCCCCC----HHHHHHHHHHHhh
Confidence 998443 23333444555555556799999999999885 4445667777753
No 93
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=99.41 E-value=5.5e-11 Score=90.38 Aligned_cols=169 Identities=16% Similarity=0.164 Sum_probs=113.6
Q ss_pred CCCCeEEEEcCCCC-----ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-CC---CHHHHHHHHHHHHHHcCC-C
Q 045335 67 PDPPTAVLLHGILG-----SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-LT---TVASTALDVLKLVAQLRI-T 136 (339)
Q Consensus 67 ~~~~~vv~lHG~~~-----~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~~---~~~~~a~dl~~~l~~l~~-~ 136 (339)
+..|..|.+|--+. +...-..+...|.+. ||.++-+|+||-|+|..+ +. ..+|.... .+++++... .
T Consensus 26 ~~~~iAli~HPHPl~gGtm~nkvv~~la~~l~~~--G~atlRfNfRgVG~S~G~fD~GiGE~~Da~aa-ldW~~~~hp~s 102 (210)
T COG2945 26 PAAPIALICHPHPLFGGTMNNKVVQTLARALVKR--GFATLRFNFRGVGRSQGEFDNGIGELEDAAAA-LDWLQARHPDS 102 (210)
T ss_pred CCCceEEecCCCccccCccCCHHHHHHHHHHHhC--CceEEeecccccccccCcccCCcchHHHHHHH-HHHHHhhCCCc
Confidence 45676777775432 233445566677776 999999999999999543 22 33333333 334444332 2
Q ss_pred c-eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcC
Q 045335 137 P-RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQG 215 (339)
Q Consensus 137 ~-~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (339)
+ ..|.|.|+|++|++.+|.+.|+. .++++..|.... .
T Consensus 103 ~~~~l~GfSFGa~Ia~~la~r~~e~------~~~is~~p~~~~------------------------------~------ 140 (210)
T COG2945 103 ASCWLAGFSFGAYIAMQLAMRRPEI------LVFISILPPINA------------------------------Y------ 140 (210)
T ss_pred hhhhhcccchHHHHHHHHHHhcccc------cceeeccCCCCc------------------------------h------
Confidence 3 36899999999999999999882 333332210000 0
Q ss_pred CchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHH
Q 045335 216 FSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIH 295 (339)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~ 295 (339)
...-..++++|.++|.|+.| |++.+.
T Consensus 141 -----------------------------------------------dfs~l~P~P~~~lvi~g~~D-------dvv~l~ 166 (210)
T COG2945 141 -----------------------------------------------DFSFLAPCPSPGLVIQGDAD-------DVVDLV 166 (210)
T ss_pred -----------------------------------------------hhhhccCCCCCceeEecChh-------hhhcHH
Confidence 00001234589999999998 788888
Q ss_pred HHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 296 AAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 296 ~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
...++.+. -..+++++++++||.+ .+-+.+.+.|.+||.
T Consensus 167 ~~l~~~~~--~~~~~i~i~~a~HFF~-gKl~~l~~~i~~~l~ 205 (210)
T COG2945 167 AVLKWQES--IKITVITIPGADHFFH-GKLIELRDTIADFLE 205 (210)
T ss_pred HHHHhhcC--CCCceEEecCCCceec-ccHHHHHHHHHHHhh
Confidence 88888776 4688999999999987 567778999999984
No 94
>PRK10162 acetyl esterase; Provisional
Probab=99.41 E-value=8.9e-11 Score=101.50 Aligned_cols=115 Identities=13% Similarity=0.042 Sum_probs=77.5
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCC---CChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHH---HHHHHHH
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGIL---GSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVAST---ALDVLKL 129 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~---~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~---a~dl~~~ 129 (339)
+....+.+.. ...|.||++||.+ ++...|..+...|++.. |+.|+++|+|......- +..+++. .+.+.+.
T Consensus 69 i~~~~y~P~~-~~~p~vv~~HGGg~~~g~~~~~~~~~~~la~~~-g~~Vv~vdYrlape~~~-p~~~~D~~~a~~~l~~~ 145 (318)
T PRK10162 69 VETRLYYPQP-DSQATLFYLHGGGFILGNLDTHDRIMRLLASYS-GCTVIGIDYTLSPEARF-PQAIEEIVAVCCYFHQH 145 (318)
T ss_pred eEEEEECCCC-CCCCEEEEEeCCcccCCCchhhhHHHHHHHHHc-CCEEEEecCCCCCCCCC-CCcHHHHHHHHHHHHHh
Confidence 4444443322 3468999999976 56678888999998865 88999999996554321 2234443 3344444
Q ss_pred HHHcCC--CceEEEEEchhHHHHHHHHHHccCCC---CCCceEEEEecc
Q 045335 130 VAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPL---ARPVRVWVLDAT 173 (339)
Q Consensus 130 l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~---~~v~~lv~l~~~ 173 (339)
.+.+++ ++++|+|+|+||.+++.++.+..+.. ..+.+++++.+.
T Consensus 146 ~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~ 194 (318)
T PRK10162 146 AEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGL 194 (318)
T ss_pred HHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCc
Confidence 455665 58999999999999999998653321 156677776553
No 95
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=99.40 E-value=1.2e-12 Score=121.41 Aligned_cols=120 Identities=10% Similarity=-0.035 Sum_probs=89.3
Q ss_pred eeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh---hHH-HHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCH-HHHHH
Q 045335 50 LIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK---NWG-TFARRLARAYPTWQTCDVMVIPHQSRKGGLTTV-ASTAL 124 (339)
Q Consensus 50 ~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~---~~~-~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~-~~~a~ 124 (339)
+.||..|++..+-+.+.+..|+||++||++.+.. .+. .....|+++ ||.|+++|+||+|.|....... ...++
T Consensus 3 ~~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~~~~~~~~l~~~--Gy~vv~~D~RG~g~S~g~~~~~~~~~~~ 80 (550)
T TIGR00976 3 MRDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGLDKTEPAWFVAQ--GYAVVIQDTRGRGASEGEFDLLGSDEAA 80 (550)
T ss_pred CCCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhccccccccHHHHHhC--CcEEEEEeccccccCCCceEecCcccch
Confidence 3477888866665544445789999999997653 222 234567776 8999999999999996543222 56788
Q ss_pred HHHHHHHHcCC-----CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 125 DVLKLVAQLRI-----TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 125 dl~~~l~~l~~-----~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
|+.++++.+.. +++.++|||+||.+++.+|..+|+ ++++++..++..
T Consensus 81 D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~---~l~aiv~~~~~~ 132 (550)
T TIGR00976 81 DGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPP---ALRAIAPQEGVW 132 (550)
T ss_pred HHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCC---ceeEEeecCccc
Confidence 88888877632 589999999999999999999988 666777766553
No 96
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.39 E-value=1.4e-11 Score=100.93 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=91.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceEEEEEchhHH
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRI-TPRVLVGHSFGGK 148 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~-~~~~lvGhS~Gg~ 148 (339)
|+|+|+|+.++....|..+...|.... .|+.++.||+|.-.....+++++++...+.|..... ++++|+|||+||.
T Consensus 1 ~pLF~fhp~~G~~~~~~~L~~~l~~~~---~v~~l~a~g~~~~~~~~~~l~~~a~~yv~~Ir~~QP~GPy~L~G~S~GG~ 77 (257)
T COG3319 1 PPLFCFHPAGGSVLAYAPLAAALGPLL---PVYGLQAPGYGAGEQPFASLDDMAAAYVAAIRRVQPEGPYVLLGWSLGGA 77 (257)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhccCc---eeeccccCcccccccccCCHHHHHHHHHHHHHHhCCCCCEEEEeeccccH
Confidence 689999999999999999999999886 999999999998777789999999999998888754 6899999999999
Q ss_pred HHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 149 VVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 149 ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
+|+.+|.+.-..-..|..++++|+.+.
T Consensus 78 vA~evA~qL~~~G~~Va~L~llD~~~~ 104 (257)
T COG3319 78 VAFEVAAQLEAQGEEVAFLGLLDAVPP 104 (257)
T ss_pred HHHHHHHHHHhCCCeEEEEEEeccCCC
Confidence 999999876554447889999999876
No 97
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=99.37 E-value=6.4e-11 Score=96.96 Aligned_cols=98 Identities=21% Similarity=0.255 Sum_probs=67.7
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCC-CCCCC------------CCHHHHHHHHHHHHHHc
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQS-RKGGL------------TTVASTALDVLKLVAQL 133 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~-S~~~~------------~~~~~~a~dl~~~l~~l 133 (339)
+..|.||++|++.+-....+.+.+.|++. ||.|+++|+-+-.. ..... ...+...+++...++.+
T Consensus 12 ~~~~~Vvv~~d~~G~~~~~~~~ad~lA~~--Gy~v~~pD~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~l 89 (218)
T PF01738_consen 12 GPRPAVVVIHDIFGLNPNIRDLADRLAEE--GYVVLAPDLFGGRGAPPSDPEEAFAAMRELFAPRPEQVAADLQAAVDYL 89 (218)
T ss_dssp SSEEEEEEE-BTTBS-HHHHHHHHHHHHT--T-EEEEE-CCCCTS--CCCHHCHHHHHHHCHHHSHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCchHHHHHHHHHHhc--CCCEEecccccCCCCCccchhhHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 45789999999998777777889999998 99999999865444 11110 01345667776666655
Q ss_pred ---C---CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEE
Q 045335 134 ---R---ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVL 170 (339)
Q Consensus 134 ---~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l 170 (339)
. .+++.++|+||||.+++.+|.+.+ .+...+..
T Consensus 90 ~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~----~~~a~v~~ 128 (218)
T PF01738_consen 90 RAQPEVDPGKIGVVGFCWGGKLALLLAARDP----RVDAAVSF 128 (218)
T ss_dssp HCTTTCEEEEEEEEEETHHHHHHHHHHCCTT----TSSEEEEE
T ss_pred HhccccCCCcEEEEEEecchHHhhhhhhhcc----ccceEEEE
Confidence 2 257999999999999999998763 45566554
No 98
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=99.36 E-value=1.4e-10 Score=100.45 Aligned_cols=117 Identities=19% Similarity=0.106 Sum_probs=74.2
Q ss_pred eCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHH-HHHHHHHHhCCCceEEEEeeCCCCCCCCCCCC--HHHHHHHHHH
Q 045335 52 QGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWG-TFARRLARAYPTWQTCDVMVIPHQSRKGGLTT--VASTALDVLK 128 (339)
Q Consensus 52 ~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~-~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~--~~~~a~dl~~ 128 (339)
.|+.|.-+.+-+.+....|+||++-|+.+-...+. .+.+.|++. |+.++++|+||.|.|..-+.+ .+.+-+.+.+
T Consensus 173 eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~~~~l~~r--GiA~LtvDmPG~G~s~~~~l~~D~~~l~~aVLd 250 (411)
T PF06500_consen 173 EGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLFRDYLAPR--GIAMLTVDMPGQGESPKWPLTQDSSRLHQAVLD 250 (411)
T ss_dssp TTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHHHCCCHHC--T-EEEEE--TTSGGGTTT-S-S-CCHHHHHHHH
T ss_pred CCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHHHHHHHhC--CCEEEEEccCCCcccccCCCCcCHHHHHHHHHH
Confidence 45555533333434445577777778877776654 444667777 999999999999998543322 2345555666
Q ss_pred HHHHcC---CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 129 LVAQLR---ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 129 ~l~~l~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
.+.... ..++.++|.|+||.+|.++|..+++ |++++|.++++
T Consensus 251 ~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~---RlkavV~~Ga~ 295 (411)
T PF06500_consen 251 YLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDP---RLKAVVALGAP 295 (411)
T ss_dssp HHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTT---T-SEEEEES--
T ss_pred HHhcCCccChhheEEEEeccchHHHHHHHHhccc---ceeeEeeeCch
Confidence 665543 3589999999999999999998888 77788877665
No 99
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=99.32 E-value=1.8e-11 Score=95.13 Aligned_cols=156 Identities=17% Similarity=0.257 Sum_probs=95.0
Q ss_pred EEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHH
Q 045335 72 AVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 72 vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia 150 (339)
|+++||++++. ..|....+.-.+.. ++|-.+++ ...+.+++.+.+.+.+.... ++++|||||+|+..+
T Consensus 1 v~IvhG~~~s~~~HW~~wl~~~l~~~--~~V~~~~~--------~~P~~~~W~~~l~~~i~~~~-~~~ilVaHSLGc~~~ 69 (171)
T PF06821_consen 1 VLIVHGYGGSPPDHWQPWLERQLENS--VRVEQPDW--------DNPDLDEWVQALDQAIDAID-EPTILVAHSLGCLTA 69 (171)
T ss_dssp EEEE--TTSSTTTSTHHHHHHHHTTS--EEEEEC----------TS--HHHHHHHHHHCCHC-T-TTEEEEEETHHHHHH
T ss_pred CEEeCCCCCCCccHHHHHHHHhCCCC--eEEecccc--------CCCCHHHHHHHHHHHHhhcC-CCeEEEEeCHHHHHH
Confidence 68999999885 67766554433331 36666655 34577888888888877664 679999999999999
Q ss_pred HHHHH-HccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhcc
Q 045335 151 LSMVE-QAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLK 229 (339)
Q Consensus 151 ~~~a~-~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (339)
+++++ .... +|.+++++++.-...... ..+. +.
T Consensus 70 l~~l~~~~~~---~v~g~lLVAp~~~~~~~~-----------------------------------~~~~--------~~ 103 (171)
T PF06821_consen 70 LRWLAEQSQK---KVAGALLVAPFDPDDPEP-----------------------------------FPPE--------LD 103 (171)
T ss_dssp HHHHHHTCCS---SEEEEEEES--SCGCHHC-----------------------------------CTCG--------GC
T ss_pred HHHHhhcccc---cccEEEEEcCCCcccccc-----------------------------------hhhh--------cc
Confidence 99995 4444 777888886541100000 0000 00
Q ss_pred CCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCee
Q 045335 230 PAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVE 309 (339)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~ 309 (339)
. +.. +...+.++|.++|.+++| ++++.+...++++.+ +++
T Consensus 104 ~-------------------------f~~------~p~~~l~~~~~viaS~nD-------p~vp~~~a~~~A~~l--~a~ 143 (171)
T PF06821_consen 104 G-------------------------FTP------LPRDPLPFPSIVIASDND-------PYVPFERAQRLAQRL--GAE 143 (171)
T ss_dssp C-------------------------CTT------SHCCHHHCCEEEEEETTB-------SSS-HHHHHHHHHHH--T-E
T ss_pred c-------------------------ccc------CcccccCCCeEEEEcCCC-------CccCHHHHHHHHHHc--CCC
Confidence 0 000 000001166688888887 688999999999997 999
Q ss_pred EEEecCCCccccccC
Q 045335 310 MHVLEDAGHWVHADN 324 (339)
Q Consensus 310 ~~~i~~~gH~~~~e~ 324 (339)
++.++++||+.-.+-
T Consensus 144 ~~~~~~~GHf~~~~G 158 (171)
T PF06821_consen 144 LIILGGGGHFNAASG 158 (171)
T ss_dssp EEEETS-TTSSGGGT
T ss_pred eEECCCCCCcccccC
Confidence 999999999987654
No 100
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=99.31 E-value=7e-10 Score=87.65 Aligned_cols=228 Identities=14% Similarity=0.125 Sum_probs=112.6
Q ss_pred EeeeCeeEEEeec-cCCCCC-CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC-CCCCC--CCCCHHHHH
Q 045335 49 DLIQGTLVRWSSM-MDKSIP-DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH-QSRKG--GLTTVASTA 123 (339)
Q Consensus 49 ~~~~g~~l~~~~~-g~~~~~-~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~-G~S~~--~~~~~~~~a 123 (339)
..-+|.+|+.+.. +....+ ..++||+.+|++.....|..++.+|+.. ||+|+-+|-..| |.|+. ..++++...
T Consensus 8 ~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~agLA~YL~~N--GFhViRyDsl~HvGlSsG~I~eftms~g~ 85 (294)
T PF02273_consen 8 RLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFAGLAEYLSAN--GFHVIRYDSLNHVGLSSGDINEFTMSIGK 85 (294)
T ss_dssp EETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGHHHHHHHHTT--T--EEEE---B-------------HHHHH
T ss_pred EcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHHHHHHHHhhC--CeEEEeccccccccCCCCChhhcchHHhH
Confidence 4447888885444 433333 3489999999999999999999999998 999999998877 88854 458999999
Q ss_pred HHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCcc
Q 045335 124 LDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKE 200 (339)
Q Consensus 124 ~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (339)
+++..+++.+ +..++-||+-|+.|-+|+..|++- .+.-++...+... ....+.+.+..--..
T Consensus 86 ~sL~~V~dwl~~~g~~~~GLIAaSLSaRIAy~Va~~i-----~lsfLitaVGVVn----------lr~TLe~al~~Dyl~ 150 (294)
T PF02273_consen 86 ASLLTVIDWLATRGIRRIGLIAASLSARIAYEVAADI-----NLSFLITAVGVVN----------LRDTLEKALGYDYLQ 150 (294)
T ss_dssp HHHHHHHHHHHHTT---EEEEEETTHHHHHHHHTTTS-------SEEEEES--S-----------HHHHHHHHHSS-GGG
T ss_pred HHHHHHHHHHHhcCCCcchhhhhhhhHHHHHHHhhcc-----CcceEEEEeeeee----------HHHHHHHHhccchhh
Confidence 9988888776 667899999999999999999843 2334444332210 011111111100000
Q ss_pred ccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEecc
Q 045335 201 VISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAE 280 (339)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~ 280 (339)
....++-....-.+..-....|+...++..+. +++ .-...++.+. +|++...++
T Consensus 151 -~~i~~lp~dldfeGh~l~~~vFv~dc~e~~w~-----------~l~------------ST~~~~k~l~--iP~iaF~A~ 204 (294)
T PF02273_consen 151 -LPIEQLPEDLDFEGHNLGAEVFVTDCFEHGWD-----------DLD------------STINDMKRLS--IPFIAFTAN 204 (294)
T ss_dssp -S-GGG--SEEEETTEEEEHHHHHHHHHHTT-S-----------SHH------------HHHHHHTT----S-EEEEEET
T ss_pred -cchhhCCCcccccccccchHHHHHHHHHcCCc-----------cch------------hHHHHHhhCC--CCEEEEEeC
Confidence 00000000000000000111122222211110 001 1123344454 999999999
Q ss_pred chhhhhhhhhHHHHHHHHHHHHhC-CCCeeEEEecCCCccccccChhH
Q 045335 281 RSLHRWALEDIQRIHAAEELAVDG-GGGVEMHVLEDAGHWVHADNPDG 327 (339)
Q Consensus 281 ~d~~~~g~~d~~~~~~~~~~~~~~-~~~~~~~~i~~~gH~~~~e~p~~ 327 (339)
+| +++......++.... .+.++++.++|++|.+- |+|-.
T Consensus 205 ~D-------~WV~q~eV~~~~~~~~s~~~klysl~Gs~HdL~-enl~v 244 (294)
T PF02273_consen 205 DD-------DWVKQSEVEELLDNINSNKCKLYSLPGSSHDLG-ENLVV 244 (294)
T ss_dssp T--------TTS-HHHHHHHHTT-TT--EEEEEETT-SS-TT-SSHHH
T ss_pred CC-------ccccHHHHHHHHHhcCCCceeEEEecCccchhh-hChHH
Confidence 98 678888888887743 35689999999999985 66643
No 101
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=99.29 E-value=7.3e-10 Score=99.94 Aligned_cols=125 Identities=14% Similarity=0.095 Sum_probs=85.3
Q ss_pred ceeEEeee----CeeEEEeeccCCC-CCCCCeEEEEcCCCCChhhHHHHHH------------------HHHHhCCCceE
Q 045335 45 VLAYDLIQ----GTLVRWSSMMDKS-IPDPPTAVLLHGILGSRKNWGTFAR------------------RLARAYPTWQT 101 (339)
Q Consensus 45 ~~~~~~~~----g~~l~~~~~g~~~-~~~~~~vv~lHG~~~~~~~~~~~~~------------------~L~~~~~g~~v 101 (339)
...|..++ +..++|..+.... +.+.|.||+++|.++++..+..+.+ .+.+. .++
T Consensus 48 ~sGy~~v~~~~~~~~lFyw~~~s~~~~~~~Pl~lwlnGGPG~ss~~G~f~E~GP~~i~~~~~~~~~n~~sW~~~---~~~ 124 (462)
T PTZ00472 48 WSGYFDIPGNQTDKHYFYWAFGPRNGNPEAPVLLWMTGGPGCSSMFALLAENGPCLMNETTGDIYNNTYSWNNE---AYV 124 (462)
T ss_pred eeEEEEeCCCCCCceEEEEEEEcCCCCCCCCEEEEECCCCcHHHHHhhhccCCCeEEeCCCCceeECCcccccc---cCe
Confidence 34566664 4678877776443 3467999999999998866533210 12222 489
Q ss_pred EEEeeC-CCCCCCCC----CCCHHHHHHHHHHHHHH-------cCCCceEEEEEchhHHHHHHHHHHccC--------CC
Q 045335 102 CDVMVI-PHQSRKGG----LTTVASTALDVLKLVAQ-------LRITPRVLVGHSFGGKVVLSMVEQAAK--------PL 161 (339)
Q Consensus 102 i~~D~~-G~G~S~~~----~~~~~~~a~dl~~~l~~-------l~~~~~~lvGhS~Gg~ia~~~a~~~p~--------~~ 161 (339)
+.+|.| |+|.|... ..+.++.++|+.++++. ++..+++|+|||+||.++..+|.+--+ .+
T Consensus 125 l~iDqP~G~G~S~~~~~~~~~~~~~~a~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~i~~~n~~~~~~~i 204 (462)
T PTZ00472 125 IYVDQPAGVGFSYADKADYDHNESEVSEDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYRINMGNKKGDGLYI 204 (462)
T ss_pred EEEeCCCCcCcccCCCCCCCCChHHHHHHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHHHHhhccccCCcee
Confidence 999976 88888432 25668889999998874 345789999999999999888875311 12
Q ss_pred CCCceEEEEecc
Q 045335 162 ARPVRVWVLDAT 173 (339)
Q Consensus 162 ~~v~~lv~l~~~ 173 (339)
.++++++-++.
T Consensus 205 -nLkGi~IGNg~ 215 (462)
T PTZ00472 205 -NLAGLAVGNGL 215 (462)
T ss_pred -eeEEEEEeccc
Confidence 45566666554
No 102
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=99.27 E-value=2.4e-09 Score=93.62 Aligned_cols=103 Identities=11% Similarity=0.064 Sum_probs=80.2
Q ss_pred CCeEEEEcCCCCChhhH-HHHHHHHHHhCCCceEEEEeeCCCCCCC--CCCCCHHHHHHHHHHHHHHcCCCceEEEEEch
Q 045335 69 PPTAVLLHGILGSRKNW-GTFARRLARAYPTWQTCDVMVIPHQSRK--GGLTTVASTALDVLKLVAQLRITPRVLVGHSF 145 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~-~~~~~~L~~~~~g~~vi~~D~~G~G~S~--~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~ 145 (339)
.|+||++.-+.+..... +.+++.|.+ |+.|+..|+.--+..+ ...+++++|++.+.++++++|.+ ++|+|+|+
T Consensus 102 ~~pvLiV~Pl~g~~~~L~RS~V~~Ll~---g~dVYl~DW~~p~~vp~~~~~f~ldDYi~~l~~~i~~~G~~-v~l~GvCq 177 (406)
T TIGR01849 102 GPAVLIVAPMSGHYATLLRSTVEALLP---DHDVYITDWVNARMVPLSAGKFDLEDYIDYLIEFIRFLGPD-IHVIAVCQ 177 (406)
T ss_pred CCcEEEEcCCchHHHHHHHHHHHHHhC---CCcEEEEeCCCCCCCchhcCCCCHHHHHHHHHHHHHHhCCC-CcEEEEch
Confidence 37999999988655443 456666665 4699999998887664 45689999999999999999866 99999999
Q ss_pred hHHHHHHHHHHccCCC--CCCceEEEEeccCC
Q 045335 146 GGKVVLSMVEQAAKPL--ARPVRVWVLDATPG 175 (339)
Q Consensus 146 Gg~ia~~~a~~~p~~~--~~v~~lv~l~~~~~ 175 (339)
||..++.+++.+.+.- .+++.++++.++.-
T Consensus 178 gG~~~laa~Al~a~~~~p~~~~sltlm~~PID 209 (406)
T TIGR01849 178 PAVPVLAAVALMAENEPPAQPRSMTLMGGPID 209 (406)
T ss_pred hhHHHHHHHHHHHhcCCCCCcceEEEEecCcc
Confidence 9999888887763321 15788888877643
No 103
>COG0400 Predicted esterase [General function prediction only]
Probab=99.23 E-value=6.7e-10 Score=88.37 Aligned_cols=102 Identities=17% Similarity=0.162 Sum_probs=71.1
Q ss_pred CCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC----------CCCCCCC-------CHHHHHHHH
Q 045335 64 KSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ----------SRKGGLT-------TVASTALDV 126 (339)
Q Consensus 64 ~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G----------~S~~~~~-------~~~~~a~dl 126 (339)
..++..|+||++||+|++...+.+....+..+. .++.+ ||-= +.+...+ ..+.+++.+
T Consensus 13 ~~~p~~~~iilLHG~Ggde~~~~~~~~~~~P~~---~~is~--rG~v~~~g~~~~f~~~~~~~~d~edl~~~~~~~~~~l 87 (207)
T COG0400 13 PGDPAAPLLILLHGLGGDELDLVPLPELILPNA---TLVSP--RGPVAENGGPRFFRRYDEGSFDQEDLDLETEKLAEFL 87 (207)
T ss_pred CCCCCCcEEEEEecCCCChhhhhhhhhhcCCCC---eEEcC--CCCccccCcccceeecCCCccchhhHHHHHHHHHHHH
Confidence 355678899999999999988877555554443 55543 3321 0111122 344556667
Q ss_pred HHHHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 127 LKLVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 127 ~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
..+.++.++ ++++++|+|-||++++.+..++|+ .+.+++++.+.
T Consensus 88 ~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~---~~~~ail~~g~ 133 (207)
T COG0400 88 EELAEEYGIDSSRIILIGFSQGANIALSLGLTLPG---LFAGAILFSGM 133 (207)
T ss_pred HHHHHHhCCChhheEEEecChHHHHHHHHHHhCch---hhccchhcCCc
Confidence 777777777 789999999999999999999998 55577777654
No 104
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=99.23 E-value=2.2e-10 Score=93.39 Aligned_cols=106 Identities=21% Similarity=0.168 Sum_probs=71.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHh-----C-CCceEEEEeeCCCCCCCCCCCCHHHHHHHH----HHHHHHc----
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARA-----Y-PTWQTCDVMVIPHQSRKGGLTTVASTALDV----LKLVAQL---- 133 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~-----~-~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl----~~~l~~l---- 133 (339)
++.+||||||..++...|+.+...+.+. . ..++++++|+......-. ...+.+.++.+ ..+++..
T Consensus 3 ~g~pVlFIhG~~Gs~~q~rsl~~~~~~~~~~~~~~~~~d~ft~df~~~~s~~~-g~~l~~q~~~~~~~i~~i~~~~~~~~ 81 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVRSLASELQRKALLNDNSSHFDFFTVDFNEELSAFH-GRTLQRQAEFLAEAIKYILELYKSNR 81 (225)
T ss_pred CCCEEEEECcCCCCHhHHHHHHHHHhhhhhhccCccceeEEEeccCccccccc-cccHHHHHHHHHHHHHHHHHhhhhcc
Confidence 5889999999999999988887666322 0 136899999876543321 23344444433 3343444
Q ss_pred -CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 134 -RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 134 -~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
+.++++||||||||.+|..++...+.....|..++.++++-
T Consensus 82 ~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 82 PPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred CCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 45789999999999999988876543333677888887653
No 105
>PRK10115 protease 2; Provisional
Probab=99.19 E-value=3.3e-09 Score=100.50 Aligned_cols=118 Identities=16% Similarity=-0.005 Sum_probs=87.6
Q ss_pred CCcceeEEeeeCeeEEE-eeccCC--CCCCCCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCC---
Q 045335 42 PSGVLAYDLIQGTLVRW-SSMMDK--SIPDPPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRK--- 113 (339)
Q Consensus 42 ~~~~~~~~~~~g~~l~~-~~~g~~--~~~~~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~--- 113 (339)
.+..+.|...||..|.+ ..+.+. ..+..|.||++||..+.. ..|......|.++ ||-|+.++.||-|.=.
T Consensus 415 ~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~~~~~l~~r--G~~v~~~n~RGs~g~G~~w 492 (686)
T PRK10115 415 RSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSFSRLSLLDR--GFVYAIVHVRGGGELGQQW 492 (686)
T ss_pred EEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccHHHHHHHHC--CcEEEEEEcCCCCccCHHH
Confidence 44556677889999885 444332 233468999999988766 3566667788887 9999999999865221
Q ss_pred -------CCCCCHHHHHHHHHHHHHHc--CCCceEEEEEchhHHHHHHHHHHccCCC
Q 045335 114 -------GGLTTVASTALDVLKLVAQL--RITPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 114 -------~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
....+++|+.+-+..+++.- ..+++.+.|.|.||.++...+.++|+++
T Consensus 493 ~~~g~~~~k~~~~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf 549 (686)
T PRK10115 493 YEDGKFLKKKNTFNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELF 549 (686)
T ss_pred HHhhhhhcCCCcHHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhhe
Confidence 12367888887777776552 2367999999999999999999999955
No 106
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=99.17 E-value=6.2e-10 Score=91.68 Aligned_cols=108 Identities=18% Similarity=0.216 Sum_probs=72.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHH-HhCCCceEEEEeeCCCC------C-C--CCC---------C--CCHHHHHHHH
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLA-RAYPTWQTCDVMVIPHQ------S-R--KGG---------L--TTVASTALDV 126 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~-~~~~g~~vi~~D~~G~G------~-S--~~~---------~--~~~~~~a~dl 126 (339)
...|.||+||++++...+..++..+. +....-.++.++----| . + ... . .++..+++.+
T Consensus 10 ~~tPTifihG~~gt~~s~~~mi~~~~~~~~~~~~~l~v~V~~~G~v~~~G~~~~~~~nPiIqV~F~~n~~~~~~~qa~wl 89 (255)
T PF06028_consen 10 STTPTIFIHGYGGTANSFNHMINRLENKQGVAQKVLTVTVSKNGKVKVSGKLSKNAKNPIIQVNFEDNRNANYKKQAKWL 89 (255)
T ss_dssp S-EEEEEE--TTGGCCCCHHHHHHHHHCSTS-S-EEEEEEETTSEEEEES---TT-SS-EEEEEESSTT-CHHHHHHHHH
T ss_pred CCCcEEEECCCCCChhHHHHHHHHHHhhcCCCceEEEEEECCCCeEEEeeecCCCCCCCEEEEEecCCCcCCHHHHHHHH
Confidence 46789999999999999999999998 44223355554443333 1 1 111 1 3688889999
Q ss_pred HHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCC--CCCCceEEEEeccCC
Q 045335 127 LKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKP--LARPVRVWVLDATPG 175 (339)
Q Consensus 127 ~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~--~~~v~~lv~l~~~~~ 175 (339)
..+|..| +++++.+|||||||.+++.++..+... ...+.++|.++++..
T Consensus 90 ~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfn 144 (255)
T PF06028_consen 90 KKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFN 144 (255)
T ss_dssp HHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TT
T ss_pred HHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccC
Confidence 8888877 678999999999999999999886432 225789999987643
No 107
>KOG2624 consensus Triglyceride lipase-cholesterol esterase [Lipid transport and metabolism]
Probab=99.15 E-value=1.1e-09 Score=95.60 Aligned_cols=128 Identities=15% Similarity=0.123 Sum_probs=97.6
Q ss_pred cceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHH------HHHHHHHHhCCCceEEEEeeCCCCCCCC---
Q 045335 44 GVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWG------TFARRLARAYPTWQTCDVMVIPHQSRKG--- 114 (339)
Q Consensus 44 ~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~------~~~~~L~~~~~g~~vi~~D~~G~G~S~~--- 114 (339)
.....++.||-.+..+..+..+ +.+|+|+|.||+.+++..|- .+.-.|++. ||.|+.-+.||---|.+
T Consensus 49 E~h~V~T~DgYiL~lhRIp~~~-~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~Lada--GYDVWLgN~RGn~ySr~h~~ 125 (403)
T KOG2624|consen 49 EEHEVTTEDGYILTLHRIPRGK-KKRPVVLLQHGLLASSSSWVLNGPEQSLAFLLADA--GYDVWLGNNRGNTYSRKHKK 125 (403)
T ss_pred EEEEEEccCCeEEEEeeecCCC-CCCCcEEEeeccccccccceecCccccHHHHHHHc--CCceeeecCcCcccchhhcc
Confidence 3344567788888887776644 67899999999999999993 334456666 99999999999665521
Q ss_pred ------C---CCCHHHH-----HHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 115 ------G---LTTVAST-----ALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 115 ------~---~~~~~~~-----a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
. ++|+.++ .+.|..+++..+.++++.||||.|+.+...++...|+.-++|+..++++++.
T Consensus 126 l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~ 199 (403)
T KOG2624|consen 126 LSPSSDKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAA 199 (403)
T ss_pred cCCcCCcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchh
Confidence 1 2466654 3455556666688899999999999999999999988766788888887765
No 108
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=99.14 E-value=1.7e-09 Score=84.76 Aligned_cols=250 Identities=17% Similarity=0.155 Sum_probs=129.5
Q ss_pred EEeeeCeeEEEeeccCCCCCCCC-eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-----CCCHHH
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPP-TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-----LTTVAS 121 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~-~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-----~~~~~~ 121 (339)
.-..||..+.-..+...+ ..+ .++.-.+.+.....+++++..+++. ||.|+.+|+||.|.|... .+.+.|
T Consensus 10 l~~~DG~~l~~~~~pA~~--~~~g~~~va~a~Gv~~~fYRrfA~~a~~~--Gf~Vlt~dyRG~g~S~p~~~~~~~~~~~D 85 (281)
T COG4757 10 LPAPDGYSLPGQRFPADG--KASGRLVVAGATGVGQYFYRRFAAAAAKA--GFEVLTFDYRGIGQSRPASLSGSQWRYLD 85 (281)
T ss_pred cccCCCccCccccccCCC--CCCCcEEecccCCcchhHhHHHHHHhhcc--CceEEEEecccccCCCccccccCccchhh
Confidence 334566666655554422 233 4555556666667788888888887 999999999999999543 355555
Q ss_pred HH-HHHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhc
Q 045335 122 TA-LDVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSK 196 (339)
Q Consensus 122 ~a-~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (339)
++ .|+-..++.+ .-.+.+.||||+||.+.-.+.. +| +.....+....++........+. ...+..+...
T Consensus 86 wA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~~-~~----k~~a~~vfG~gagwsg~m~~~~~-l~~~~l~~lv 159 (281)
T COG4757 86 WARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLGQ-HP----KYAAFAVFGSGAGWSGWMGLRER-LGAVLLWNLV 159 (281)
T ss_pred hhhcchHHHHHHHHhhCCCCceEEeeccccceeeccccc-Cc----ccceeeEeccccccccchhhhhc-ccceeecccc
Confidence 54 2444444443 4468899999999987655443 33 22334444444433322111000 0000000000
Q ss_pred CCccccChHHHHHHHHHcC--Cc-hHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCce
Q 045335 197 LPKEVISKQEVVNALIQQG--FS-KDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVH 273 (339)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 273 (339)
.+....-...+-..+.... .+ .-+++|- +--+... +.++-.... ...+.++++. +|
T Consensus 160 ~p~lt~w~g~~p~~l~G~G~d~p~~v~RdW~-RwcR~p~---------y~fddp~~~---------~~~q~yaaVr--tP 218 (281)
T COG4757 160 GPPLTFWKGYMPKDLLGLGSDLPGTVMRDWA-RWCRHPR---------YYFDDPAMR---------NYRQVYAAVR--TP 218 (281)
T ss_pred ccchhhccccCcHhhcCCCccCcchHHHHHH-HHhcCcc---------ccccChhHh---------HHHHHHHHhc--Cc
Confidence 0000000001111111111 11 1112211 1111100 011111111 1223444555 89
Q ss_pred eeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCe--eEEEecCC----CccccccCh-hHHHHHHHHhh
Q 045335 274 VNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGV--EMHVLEDA----GHWVHADNP-DGLFRILTSSF 336 (339)
Q Consensus 274 vl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~--~~~~i~~~----gH~~~~e~p-~~~~~~i~~fl 336 (339)
++++...+| +.+|+.....++.- .+|+ +...++.+ ||+-...+| |.+.+.+.+|+
T Consensus 219 i~~~~~~DD-------~w~P~As~d~f~~~-y~nApl~~~~~~~~~~~lGH~gyfR~~~Ealwk~~L~w~ 280 (281)
T COG4757 219 ITFSRALDD-------PWAPPASRDAFASF-YRNAPLEMRDLPRAEGPLGHMGYFREPFEALWKEMLGWF 280 (281)
T ss_pred eeeeccCCC-------CcCCHHHHHHHHHh-hhcCcccceecCcccCcccchhhhccchHHHHHHHHHhh
Confidence 999999887 57777777777764 3554 44555544 999999888 77777777765
No 109
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.13 E-value=2.3e-08 Score=82.16 Aligned_cols=118 Identities=19% Similarity=0.165 Sum_probs=83.6
Q ss_pred EEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC-CCCCCC-----------
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH-QSRKGG----------- 115 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~-G~S~~~----------- 115 (339)
+...++.--.|...+. +....|.||++|++.+-....+.+.+.|+.. ||.|+++|+-+. |.+...
T Consensus 7 ~~~~~~~~~~~~a~P~-~~~~~P~VIv~hei~Gl~~~i~~~a~rlA~~--Gy~v~~Pdl~~~~~~~~~~~~~~~~~~~~~ 83 (236)
T COG0412 7 IPAPDGELPAYLARPA-GAGGFPGVIVLHEIFGLNPHIRDVARRLAKA--GYVVLAPDLYGRQGDPTDIEDEPAELETGL 83 (236)
T ss_pred eeCCCceEeEEEecCC-cCCCCCEEEEEecccCCchHHHHHHHHHHhC--CcEEEechhhccCCCCCcccccHHHHhhhh
Confidence 3333433333555543 3333489999999999998999999999998 999999998874 433111
Q ss_pred --CCCHHHHHHHHHHHHHHcC------CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 116 --LTTVASTALDVLKLVAQLR------ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 116 --~~~~~~~a~dl~~~l~~l~------~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
..+..+...|+...++.|. .+++.++|.||||.+++.++.+.| .+++.+..-+
T Consensus 84 ~~~~~~~~~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~----~v~a~v~fyg 144 (236)
T COG0412 84 VERVDPAEVLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAP----EVKAAVAFYG 144 (236)
T ss_pred hccCCHHHHHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccC----CccEEEEecC
Confidence 1223667778877777763 356999999999999999999877 3445555433
No 110
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=99.13 E-value=2.5e-09 Score=88.84 Aligned_cols=103 Identities=18% Similarity=0.236 Sum_probs=61.8
Q ss_pred CCCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc--------CCC
Q 045335 68 DPPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL--------RIT 136 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l--------~~~ 136 (339)
....||||.|++.+- .....+.+.|.+. +|.++-+-+..... .-...+++.-++||.++++.+ +.+
T Consensus 32 ~~~~llfIGGLtDGl~tvpY~~~La~aL~~~--~wsl~q~~LsSSy~-G~G~~SL~~D~~eI~~~v~ylr~~~~g~~~~~ 108 (303)
T PF08538_consen 32 APNALLFIGGLTDGLLTVPYLPDLAEALEET--GWSLFQVQLSSSYS-GWGTSSLDRDVEEIAQLVEYLRSEKGGHFGRE 108 (303)
T ss_dssp SSSEEEEE--TT--TT-STCHHHHHHHHT-T--T-EEEEE--GGGBT-TS-S--HHHHHHHHHHHHHHHHHHS------S
T ss_pred CCcEEEEECCCCCCCCCCchHHHHHHHhccC--CeEEEEEEecCccC-CcCcchhhhHHHHHHHHHHHHHHhhccccCCc
Confidence 456899999998754 3456677778654 78999998773110 112357777788877777644 346
Q ss_pred ceEEEEEchhHHHHHHHHHHccC--CCCCCceEEEEecc
Q 045335 137 PRVLVGHSFGGKVVLSMVEQAAK--PLARPVRVWVLDAT 173 (339)
Q Consensus 137 ~~~lvGhS~Gg~ia~~~a~~~p~--~~~~v~~lv~l~~~ 173 (339)
+++|+|||.|+.-+++|+..... .-..|.+.|+-++.
T Consensus 109 kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApV 147 (303)
T PF08538_consen 109 KIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPV 147 (303)
T ss_dssp -EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE-
T ss_pred cEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCC
Confidence 89999999999999999987542 11256677776554
No 111
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.11 E-value=9.7e-10 Score=88.14 Aligned_cols=229 Identities=14% Similarity=0.085 Sum_probs=132.1
Q ss_pred cceeEEeeeCeeEE-EeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC----CC--
Q 045335 44 GVLAYDLIQGTLVR-WSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKG----GL-- 116 (339)
Q Consensus 44 ~~~~~~~~~g~~l~-~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~----~~-- 116 (339)
..++|..++|.+|. |...+......-|.||-.||.++....|..++.. +.. ||-|+.+|-||.|.|.. ++
T Consensus 57 ydvTf~g~~g~rI~gwlvlP~~~~~~~P~vV~fhGY~g~~g~~~~~l~w-a~~--Gyavf~MdvRGQg~~~~dt~~~p~~ 133 (321)
T COG3458 57 YDVTFTGYGGARIKGWLVLPRHEKGKLPAVVQFHGYGGRGGEWHDMLHW-AVA--GYAVFVMDVRGQGSSSQDTADPPGG 133 (321)
T ss_pred EEEEEeccCCceEEEEEEeecccCCccceEEEEeeccCCCCCccccccc-ccc--ceeEEEEecccCCCccccCCCCCCC
Confidence 45777888888877 6666654545678999999999999888655433 333 78999999999997721 11
Q ss_pred -----------------CCHHHHHHHHHHHHHH------cCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 117 -----------------TTVASTALDVLKLVAQ------LRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 117 -----------------~~~~~~a~dl~~~l~~------l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|-+...-.|+..+++. ..-+++.+.|.|.||.+++..|+..| ++++++..-+.
T Consensus 134 ~s~pG~mtrGilD~kd~yyyr~v~~D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~----rik~~~~~~Pf 209 (321)
T COG3458 134 PSDPGFMTRGILDRKDTYYYRGVFLDAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDP----RIKAVVADYPF 209 (321)
T ss_pred CcCCceeEeecccCCCceEEeeehHHHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcCh----hhhcccccccc
Confidence 1111223343333333 24478999999999999999999877 55565544322
Q ss_pred CCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHH
Q 045335 174 PGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMY 253 (339)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (339)
.+..+ .+.... . .....++...+.... +. -...+
T Consensus 210 l~df~----------r~i~~~----~-~~~ydei~~y~k~h~-~~------------------------------e~~v~ 243 (321)
T COG3458 210 LSDFP----------RAIELA----T-EGPYDEIQTYFKRHD-PK------------------------------EAEVF 243 (321)
T ss_pred cccch----------hheeec----c-cCcHHHHHHHHHhcC-ch------------------------------HHHHH
Confidence 11111 110000 0 000011111111100 00 01111
Q ss_pred hhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHH
Q 045335 254 QSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILT 333 (339)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~ 333 (339)
..+.-.|.......++ +|+|+..|-.| +++++.......+++-...++.+++.-+|.-. |.-..+.+.
T Consensus 244 ~TL~yfD~~n~A~RiK--~pvL~svgL~D-------~vcpPstqFA~yN~l~~~K~i~iy~~~aHe~~---p~~~~~~~~ 311 (321)
T COG3458 244 ETLSYFDIVNLAARIK--VPVLMSVGLMD-------PVCPPSTQFAAYNALTTSKTIEIYPYFAHEGG---PGFQSRQQV 311 (321)
T ss_pred HHHhhhhhhhHHHhhc--cceEEeecccC-------CCCCChhhHHHhhcccCCceEEEeeccccccC---cchhHHHHH
Confidence 2222222223333444 89999999887 68899888888888655567777777676543 333344444
Q ss_pred Hhhh
Q 045335 334 SSFE 337 (339)
Q Consensus 334 ~fl~ 337 (339)
.|++
T Consensus 312 ~~l~ 315 (321)
T COG3458 312 HFLK 315 (321)
T ss_pred HHHH
Confidence 5544
No 112
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=99.10 E-value=2.4e-08 Score=84.35 Aligned_cols=236 Identities=16% Similarity=0.113 Sum_probs=124.7
Q ss_pred CCCCeEEEEcCCCCChhhHH-HH-HHHHHHhCCCceEEEEeeCCCCCCCCCC------CCHHHH----------HHHHHH
Q 045335 67 PDPPTAVLLHGILGSRKNWG-TF-ARRLARAYPTWQTCDVMVIPHQSRKGGL------TTVAST----------ALDVLK 128 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~-~~-~~~L~~~~~g~~vi~~D~~G~G~S~~~~------~~~~~~----------a~dl~~ 128 (339)
+.+|.+|.++|-|+.....+ .+ ...|.++ |+..+.+..|-||.-.+.. .++.|+ +..|..
T Consensus 90 ~~rp~~IhLagTGDh~f~rR~~l~a~pLl~~--gi~s~~le~Pyyg~RkP~~Q~~s~l~~VsDl~~~g~~~i~E~~~Ll~ 167 (348)
T PF09752_consen 90 PYRPVCIHLAGTGDHGFWRRRRLMARPLLKE--GIASLILENPYYGQRKPKDQRRSSLRNVSDLFVMGRATILESRALLH 167 (348)
T ss_pred CCCceEEEecCCCccchhhhhhhhhhHHHHc--CcceEEEecccccccChhHhhcccccchhHHHHHHhHHHHHHHHHHH
Confidence 45788899999988553332 23 5667776 8899999999999663321 233332 234455
Q ss_pred HHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHH
Q 045335 129 LVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVV 208 (339)
Q Consensus 129 ~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (339)
++++.+..++.+.|.||||..|...|+.+|. .+..+-.++..................| ..+.
T Consensus 168 Wl~~~G~~~~g~~G~SmGG~~A~laa~~~p~---pv~~vp~ls~~sAs~vFt~Gvls~~i~W--------------~~L~ 230 (348)
T PF09752_consen 168 WLEREGYGPLGLTGISMGGHMAALAASNWPR---PVALVPCLSWSSASVVFTEGVLSNSINW--------------DALE 230 (348)
T ss_pred HHHhcCCCceEEEEechhHhhHHhhhhcCCC---ceeEEEeecccCCCcchhhhhhhcCCCH--------------HHHH
Confidence 5555688999999999999999999999997 3333333333221111000000000000 1111
Q ss_pred HHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCC---CCceeeEEeccchhhh
Q 045335 209 NALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLP---QGVHVNFLKAERSLHR 285 (339)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pvl~i~g~~d~~~ 285 (339)
..+....+... ...+............... ..+.+....+...+.. ...+...+ .+-.+.++.+++|
T Consensus 231 ~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~Ea~~~m~~~md~---~T~l~nf~~P~dp~~ii~V~A~~D--- 300 (348)
T PF09752_consen 231 KQFEDTVYEEE-ISDIPAQNKSLPLDSMEER---RRDREALRFMRGVMDS---FTHLTNFPVPVDPSAIIFVAAKND--- 300 (348)
T ss_pred HHhcccchhhh-hcccccCcccccchhhccc---cchHHHHHHHHHHHHh---hccccccCCCCCCCcEEEEEecCc---
Confidence 11111101000 0000000000000000000 1112222222221111 11122222 1235778888876
Q ss_pred hhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccc-cccChhHHHHHHHHhhh
Q 045335 286 WALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWV-HADNPDGLFRILTSSFE 337 (339)
Q Consensus 286 ~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~ 337 (339)
..+|......+.+. .|++++..+++ ||.- ++-+.+.|.++|.+-++
T Consensus 301 ----aYVPr~~v~~Lq~~-WPGsEvR~l~g-GHVsA~L~~q~~fR~AI~Daf~ 347 (348)
T PF09752_consen 301 ----AYVPRHGVLSLQEI-WPGSEVRYLPG-GHVSAYLLHQEAFRQAIYDAFE 347 (348)
T ss_pred ----eEechhhcchHHHh-CCCCeEEEecC-CcEEEeeechHHHHHHHHHHhh
Confidence 36677777777776 59999999988 9965 56788999999988765
No 113
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=99.06 E-value=3.6e-08 Score=84.56 Aligned_cols=240 Identities=13% Similarity=0.044 Sum_probs=135.9
Q ss_pred CCCeEEEEcCCCCChhhH-----HHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHH-----HHHHHHHHHcCCCc
Q 045335 68 DPPTAVLLHGILGSRKNW-----GTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTA-----LDVLKLVAQLRITP 137 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~-----~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a-----~dl~~~l~~l~~~~ 137 (339)
-++|++++|-+-..-..| ..++..|.++ |..|+.+++++=..+.. ..++++|. +.+..+.+..+.++
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl~~~~s~V~~l~~~--g~~vfvIsw~nPd~~~~-~~~~edYi~e~l~~aid~v~~itg~~~ 182 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDLSPEKSLVRWLLEQ--GLDVFVISWRNPDASLA-AKNLEDYILEGLSEAIDTVKDITGQKD 182 (445)
T ss_pred CCCceEeeccccCceeEEeCCCCccHHHHHHHc--CCceEEEeccCchHhhh-hccHHHHHHHHHHHHHHHHHHHhCccc
Confidence 578999999988776555 4667788887 88999999997766644 46666666 44555556668899
Q ss_pred eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCCh-HHHHHHhhcCCc-cccChHHHHHHHHHcC
Q 045335 138 RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHP-AELIHFLSKLPK-EVISKQEVVNALIQQG 215 (339)
Q Consensus 138 ~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 215 (339)
+.++|+|.||+++..+++.++.. +|+.++++.+..-+........... ..+......+.. .......+...|.--.
T Consensus 183 InliGyCvGGtl~~~ala~~~~k--~I~S~T~lts~~DF~~~g~l~if~n~~~~~~~~~~i~~~g~lpg~~ma~~F~mLr 260 (445)
T COG3243 183 INLIGYCVGGTLLAAALALMAAK--RIKSLTLLTSPVDFSHAGDLGIFANEATIEALDADIVQKGILPGWYMAIVFFLLR 260 (445)
T ss_pred cceeeEecchHHHHHHHHhhhhc--ccccceeeecchhhccccccccccCHHHHHHHHhhhhhccCCChHHHHHHHHhcC
Confidence 99999999999999999999984 4888888876533332211111111 111111111110 1111122222221111
Q ss_pred Cch-HHHHHHHHhccCCCCCCCCCCccceec-----hHHHHHHHhhhhhh-----------hhhhhhhcCCCCceeeEEe
Q 045335 216 FSK-DVAQWVVTNLKPAASFGASSSFSWVFD-----LEGIAEMYQSYDET-----------NLWKLVENLPQGVHVNFLK 278 (339)
Q Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~pvl~i~ 278 (339)
... .+..++...+....... .....|..+ -.....+++.+... ..+-.+.+++ ||++.+.
T Consensus 261 pndliw~~fV~nyl~ge~pl~-fdllyWn~dst~~~~~~~~~~Lrn~y~~N~l~~g~~~v~G~~VdL~~It--~pvy~~a 337 (445)
T COG3243 261 PNDLIWNYFVNNYLDGEQPLP-FDLLYWNADSTRLPGAAHSEYLRNFYLENRLIRGGLEVSGTMVDLGDIT--CPVYNLA 337 (445)
T ss_pred ccccchHHHHHHhcCCCCCCc-hhHHHhhCCCccCchHHHHHHHHHHHHhChhhccceEECCEEechhhcc--cceEEEe
Confidence 111 11223333333322211 222233222 12222223222111 1112344555 9999999
Q ss_pred ccchhhhhhhhhHHHHHHHHHHHHhCCCC-eeEEEecCCCccccccC
Q 045335 279 AERSLHRWALEDIQRIHAAEELAVDGGGG-VEMHVLEDAGHWVHADN 324 (339)
Q Consensus 279 g~~d~~~~g~~d~~~~~~~~~~~~~~~~~-~~~~~i~~~gH~~~~e~ 324 (339)
++.| ++.|.......... .++ ++++.. ++||...+=+
T Consensus 338 ~~~D-------hI~P~~Sv~~g~~l-~~g~~~f~l~-~sGHIa~vVN 375 (445)
T COG3243 338 AEED-------HIAPWSSVYLGARL-LGGEVTFVLS-RSGHIAGVVN 375 (445)
T ss_pred eccc-------ccCCHHHHHHHHHh-cCCceEEEEe-cCceEEEEeC
Confidence 9998 67888888777776 455 555555 5799887655
No 114
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=99.02 E-value=1.8e-08 Score=85.32 Aligned_cols=118 Identities=10% Similarity=-0.001 Sum_probs=77.2
Q ss_pred eCeeEEEeeccC--CCCCCCCeEEEEcCCCCCh-hhHHHH--H-------HHHHHhCCCceEEEEeeCCCCCCCCCCCC-
Q 045335 52 QGTLVRWSSMMD--KSIPDPPTAVLLHGILGSR-KNWGTF--A-------RRLARAYPTWQTCDVMVIPHQSRKGGLTT- 118 (339)
Q Consensus 52 ~g~~l~~~~~g~--~~~~~~~~vv~lHG~~~~~-~~~~~~--~-------~~L~~~~~g~~vi~~D~~G~G~S~~~~~~- 118 (339)
||++|+...+-+ .....-|+||..|+.+.+. ...... . ..++++ ||-|+..|.||.|.|......
T Consensus 1 DGv~L~adv~~P~~~~~~~~P~il~~tpY~~~~~~~~~~~~~~~~~~~~~~~~~~~--GY~vV~~D~RG~g~S~G~~~~~ 78 (272)
T PF02129_consen 1 DGVRLAADVYRPGADGGGPFPVILTRTPYGKGDQTASDLAGANPGPPSARRPFAER--GYAVVVQDVRGTGGSEGEFDPM 78 (272)
T ss_dssp TS-EEEEEEEEE--TTSSSEEEEEEEESSTCTC-HHHHHHTTCHHSHGGGHHHHHT--T-EEEEEE-TTSTTS-S-B-TT
T ss_pred CCCEEEEEEEecCCCCCCcccEEEEccCcCCCCCcccchhhhhcccchhHHHHHhC--CCEEEEECCcccccCCCccccC
Confidence 566666655544 4444567889999998653 222211 1 127777 999999999999999654433
Q ss_pred HHHHHHHHHHHHHHc---CC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 119 VASTALDVLKLVAQL---RI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l---~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
...-++|..++|+.+ .. ++|-++|.|++|..++..|+..|. .++.++...+..
T Consensus 79 ~~~e~~D~~d~I~W~~~Qpws~G~VGm~G~SY~G~~q~~~A~~~~p---~LkAi~p~~~~~ 136 (272)
T PF02129_consen 79 SPNEAQDGYDTIEWIAAQPWSNGKVGMYGISYGGFTQWAAAARRPP---HLKAIVPQSGWS 136 (272)
T ss_dssp SHHHHHHHHHHHHHHHHCTTEEEEEEEEEETHHHHHHHHHHTTT-T---TEEEEEEESE-S
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCeEEeeccCHHHHHHHHHHhcCCC---CceEEEecccCC
Confidence 556666666666655 22 589999999999999999997777 666776665543
No 115
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=99.00 E-value=6.2e-09 Score=80.25 Aligned_cols=100 Identities=24% Similarity=0.217 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc----CCCceEEEEEc
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL----RITPRVLVGHS 144 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l----~~~~~~lvGhS 144 (339)
...+||+-|=++-...=..+...|+++ |+.|+.+|-+-|=.+ ..|.++.+.|+.++++.. +.++++|||.|
T Consensus 2 Dt~~v~~SGDgGw~~~d~~~a~~l~~~--G~~VvGvdsl~Yfw~---~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYS 76 (192)
T PF06057_consen 2 DTLAVFFSGDGGWRDLDKQIAEALAKQ--GVPVVGVDSLRYFWS---ERTPEQTAADLARIIRHYRARWGRKRVVLIGYS 76 (192)
T ss_pred CEEEEEEeCCCCchhhhHHHHHHHHHC--CCeEEEechHHHHhh---hCCHHHHHHHHHHHHHHHHHHhCCceEEEEeec
Confidence 345788888777664446678889988 999999997765554 346677777777777654 67899999999
Q ss_pred hhHHHHHHHHHHccCC-CCCCceEEEEecc
Q 045335 145 FGGKVVLSMVEQAAKP-LARPVRVWVLDAT 173 (339)
Q Consensus 145 ~Gg~ia~~~a~~~p~~-~~~v~~lv~l~~~ 173 (339)
+|+-+.-....+.|+. ..+|..++++++.
T Consensus 77 FGADvlP~~~nrLp~~~r~~v~~v~Ll~p~ 106 (192)
T PF06057_consen 77 FGADVLPFIYNRLPAALRARVAQVVLLSPS 106 (192)
T ss_pred CCchhHHHHHhhCCHHHHhheeEEEEeccC
Confidence 9999888888877763 3367777777654
No 116
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.99 E-value=3.5e-08 Score=80.31 Aligned_cols=96 Identities=24% Similarity=0.282 Sum_probs=61.0
Q ss_pred EEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH----HHHH-----cCCCceE
Q 045335 72 AVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK----LVAQ-----LRITPRV 139 (339)
Q Consensus 72 vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~----~l~~-----l~~~~~~ 139 (339)
||++||.+- +......+...+++.. |+.|+.+|+|=. +..++.+..+|+.+ +++. .+.++++
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~-g~~v~~~~Yrl~-----p~~~~p~~~~D~~~a~~~l~~~~~~~~~d~~~i~ 74 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAER-GFVVVSIDYRLA-----PEAPFPAALEDVKAAYRWLLKNADKLGIDPERIV 74 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHH-TSEEEEEE---T-----TTSSTTHHHHHHHHHHHHHHHTHHHHTEEEEEEE
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhc-cEEEEEeecccc-----ccccccccccccccceeeeccccccccccccceE
Confidence 799999774 3344456677777644 899999999932 33444444444444 4444 3446899
Q ss_pred EEEEchhHHHHHHHHHHccCC-CCCCceEEEEecc
Q 045335 140 LVGHSFGGKVVLSMVEQAAKP-LARPVRVWVLDAT 173 (339)
Q Consensus 140 lvGhS~Gg~ia~~~a~~~p~~-~~~v~~lv~l~~~ 173 (339)
|+|+|.||.+++.++.+..+. ...+.+++++.+.
T Consensus 75 l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~ 109 (211)
T PF07859_consen 75 LIGDSAGGHLALSLALRARDRGLPKPKGIILISPW 109 (211)
T ss_dssp EEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCH
T ss_pred Eeecccccchhhhhhhhhhhhcccchhhhhccccc
Confidence 999999999999999876653 1135677777653
No 117
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=98.98 E-value=5.1e-08 Score=93.23 Aligned_cols=81 Identities=12% Similarity=0.056 Sum_probs=61.4
Q ss_pred HHHHHHHhCCCceEEEEeeCCCCCCCCCCCCH-HHHHHHHHHHHHHcC--------------------CCceEEEEEchh
Q 045335 88 FARRLARAYPTWQTCDVMVIPHQSRKGGLTTV-ASTALDVLKLVAQLR--------------------ITPRVLVGHSFG 146 (339)
Q Consensus 88 ~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~-~~~a~dl~~~l~~l~--------------------~~~~~lvGhS~G 146 (339)
+.+.|.++ ||.|+..|.||.|.|+...... .+-.+|..++|+.+. .++|.++|.|+|
T Consensus 271 ~~~~~~~r--GYaVV~~D~RGtg~SeG~~~~~~~~E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~ 348 (767)
T PRK05371 271 LNDYFLPR--GFAVVYVSGIGTRGSDGCPTTGDYQEIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYL 348 (767)
T ss_pred HHHHHHhC--CeEEEEEcCCCCCCCCCcCccCCHHHHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHH
Confidence 44677777 9999999999999997653332 445666666666664 368999999999
Q ss_pred HHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 147 GKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 147 g~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|.+++.+|...|+ .++.+|...+.
T Consensus 349 G~~~~~aAa~~pp---~LkAIVp~a~i 372 (767)
T PRK05371 349 GTLPNAVATTGVE---GLETIIPEAAI 372 (767)
T ss_pred HHHHHHHHhhCCC---cceEEEeeCCC
Confidence 9999999998887 55566665443
No 118
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=98.93 E-value=5.5e-09 Score=84.81 Aligned_cols=89 Identities=12% Similarity=0.077 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCC--CceEEEEeeCCC-----CCCC------------CC-------------
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYP--TWQTCDVMVIPH-----QSRK------------GG------------- 115 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~--g~~vi~~D~~G~-----G~S~------------~~------------- 115 (339)
.++.||||||++.++..|+.....|.+... +++.+.+|-|-- |... .+
T Consensus 3 ~k~riLcLHG~~~na~if~~q~~~l~~~l~~~~~ef~f~dgP~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~ 82 (212)
T PF03959_consen 3 RKPRILCLHGYGQNAEIFRQQTSALRKALKKLDFEFVFVDGPHEVPPGPGIEPFSSEAESAFGDPGPFYSWWDPDDDDHE 82 (212)
T ss_dssp ---EEEEE--TT--HHHHHHHTHHHHHHHHHTT-EEEEE--SEE---GGG-SS---HHHHHHHHTT--EESS---S-SGG
T ss_pred CCceEEEeCCCCcCHHHHHHHHHHHHHHHhhCcEEEEEecCCcccCCcccccccccccccccCCCCcceeeeecCCCccc
Confidence 478999999999999999776655555331 358888775421 1110 00
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 116 LTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
...+++..+.|.++++..+. =.-|+|.|.||.+|..++...
T Consensus 83 ~~~~~~sl~~l~~~i~~~GP-fdGvlGFSQGA~lAa~ll~~~ 123 (212)
T PF03959_consen 83 YEGLDESLDYLRDYIEENGP-FDGVLGFSQGAALAALLLALQ 123 (212)
T ss_dssp G---HHHHHHHHHHHHHH----SEEEEETHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhcCC-eEEEEeecHHHHHHHHHHHHH
Confidence 13466777778888877652 246999999999999998654
No 119
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.92 E-value=5.2e-09 Score=93.08 Aligned_cols=92 Identities=9% Similarity=0.008 Sum_probs=69.6
Q ss_pred CChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHH----HHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 80 GSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALD----VLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 80 ~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~d----l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
.....|..+++.|.+. || +...|++|+|.+.+.....+++.++ +.++.+..+.++++||||||||.++..++.
T Consensus 105 ~~~~~~~~li~~L~~~--GY-~~~~dL~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~ 181 (440)
T PLN02733 105 DEVYYFHDMIEQLIKW--GY-KEGKTLFGFGYDFRQSNRLPETMDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMS 181 (440)
T ss_pred chHHHHHHHHHHHHHc--CC-ccCCCcccCCCCccccccHHHHHHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHH
Confidence 4568999999999997 65 4589999999886654444444444 444555567789999999999999999999
Q ss_pred HccCCC-CCCceEEEEeccC
Q 045335 156 QAAKPL-ARPVRVWVLDATP 174 (339)
Q Consensus 156 ~~p~~~-~~v~~lv~l~~~~ 174 (339)
.+|+.. ..|.++|.++++.
T Consensus 182 ~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 182 LHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HCCHhHHhHhccEEEECCCC
Confidence 998743 2366788886653
No 120
>PRK04940 hypothetical protein; Provisional
Probab=98.92 E-value=2.3e-07 Score=71.48 Aligned_cols=85 Identities=14% Similarity=0.116 Sum_probs=53.7
Q ss_pred EEEEcCCCCChhh--HHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc---C-CCceEEEEEch
Q 045335 72 AVLLHGILGSRKN--WGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL---R-ITPRVLVGHSF 145 (339)
Q Consensus 72 vv~lHG~~~~~~~--~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l---~-~~~~~lvGhS~ 145 (339)
||++|||.+|..+ .... .+.--.++.+++ +++ ..+..+..+.+.+.+..+ + .+++.|||+|+
T Consensus 2 IlYlHGF~SS~~S~~~Ka~--~l~~~~p~~~~~--~l~--------~~~P~~a~~~l~~~i~~~~~~~~~~~~~liGSSL 69 (180)
T PRK04940 2 IIYLHGFDSTSPGNHEKVL--QLQFIDPDVRLI--SYS--------TLHPKHDMQHLLKEVDKMLQLSDDERPLICGVGL 69 (180)
T ss_pred EEEeCCCCCCCCccHHHHH--hheeeCCCCeEE--ECC--------CCCHHHHHHHHHHHHHHhhhccCCCCcEEEEeCh
Confidence 7899999999877 5322 222001233444 332 233444444455554431 1 25789999999
Q ss_pred hHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 146 GGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 146 Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
||..|..+|.++.- +.|+++++.
T Consensus 70 GGyyA~~La~~~g~------~aVLiNPAv 92 (180)
T PRK04940 70 GGYWAERIGFLCGI------RQVIFNPNL 92 (180)
T ss_pred HHHHHHHHHHHHCC------CEEEECCCC
Confidence 99999999999843 677888763
No 121
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.91 E-value=2e-09 Score=86.52 Aligned_cols=85 Identities=21% Similarity=0.265 Sum_probs=55.2
Q ss_pred CeEEEEcCCCC-ChhhHHHHHHHHHHhCCCce---EEEEeeCCCCCCCCC------CCCHHHHHHHHHHHHHHcCCCceE
Q 045335 70 PTAVLLHGILG-SRKNWGTFARRLARAYPTWQ---TCDVMVIPHQSRKGG------LTTVASTALDVLKLVAQLRITPRV 139 (339)
Q Consensus 70 ~~vv~lHG~~~-~~~~~~~~~~~L~~~~~g~~---vi~~D~~G~G~S~~~------~~~~~~~a~dl~~~l~~l~~~~~~ 139 (339)
.||||+||.++ ....|..+.+.|.++ ||. |+++++-....+... ..+..++++.|.+++...+- +|.
T Consensus 2 ~PVVlVHG~~~~~~~~w~~~~~~l~~~--GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~~~l~~fI~~Vl~~TGa-kVD 78 (219)
T PF01674_consen 2 RPVVLVHGTGGNAYSNWSTLAPYLKAA--GYCDSEVYALTYGSGNGSPSVQNAHMSCESAKQLRAFIDAVLAYTGA-KVD 78 (219)
T ss_dssp --EEEE--TTTTTCGGCCHHHHHHHHT--T--CCCEEEE--S-CCHHTHHHHHHB-HHHHHHHHHHHHHHHHHHT---EE
T ss_pred CCEEEECCCCcchhhCHHHHHHHHHHc--CCCcceeEeccCCCCCCCCcccccccchhhHHHHHHHHHHHHHhhCC-EEE
Confidence 57999999999 568999999999998 888 799988444332110 01234556666666667788 999
Q ss_pred EEEEchhHHHHHHHHHHc
Q 045335 140 LVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 140 lvGhS~Gg~ia~~~a~~~ 157 (339)
|||||+||.++-.+....
T Consensus 79 IVgHS~G~~iaR~yi~~~ 96 (219)
T PF01674_consen 79 IVGHSMGGTIARYYIKGG 96 (219)
T ss_dssp EEEETCHHHHHHHHHHHC
T ss_pred EEEcCCcCHHHHHHHHHc
Confidence 999999999998887643
No 122
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=98.90 E-value=6.6e-08 Score=72.96 Aligned_cols=173 Identities=16% Similarity=0.171 Sum_probs=112.0
Q ss_pred CCeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 69 PPTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 69 ~~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
.+.+|++||+.+|. ..|... +..+.+ .+-.+++ .+......+++++.+.+.++... ++++||+||+|+
T Consensus 2 ~~~~lIVpG~~~Sg~~HWq~~---we~~l~--~a~rveq-----~~w~~P~~~dWi~~l~~~v~a~~-~~~vlVAHSLGc 70 (181)
T COG3545 2 MTDVLIVPGYGGSGPNHWQSR---WESALP--NARRVEQ-----DDWEAPVLDDWIARLEKEVNAAE-GPVVLVAHSLGC 70 (181)
T ss_pred CceEEEecCCCCCChhHHHHH---HHhhCc--cchhccc-----CCCCCCCHHHHHHHHHHHHhccC-CCeEEEEecccH
Confidence 36799999999876 566543 222221 1112222 23345788999999999888873 679999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHh
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTN 227 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (339)
.++++++.+.-. .|.+.++++++-...+. ... .. .-.
T Consensus 71 ~~v~h~~~~~~~---~V~GalLVAppd~~~~~---------------------------~~~--------~~-----~~t 107 (181)
T COG3545 71 ATVAHWAEHIQR---QVAGALLVAPPDVSRPE---------------------------IRP--------KH-----LMT 107 (181)
T ss_pred HHHHHHHHhhhh---ccceEEEecCCCccccc---------------------------cch--------hh-----ccc
Confidence 999999987655 67788777654111000 000 00 000
Q ss_pred ccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCC
Q 045335 228 LKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGG 307 (339)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~ 307 (339)
+ ......+.+-|.+++..++| .+++++..+.+++.+ +
T Consensus 108 f----------------------------------~~~p~~~lpfps~vvaSrnD-------p~~~~~~a~~~a~~w--g 144 (181)
T COG3545 108 F----------------------------------DPIPREPLPFPSVVVASRND-------PYVSYEHAEDLANAW--G 144 (181)
T ss_pred c----------------------------------CCCccccCCCceeEEEecCC-------CCCCHHHHHHHHHhc--c
Confidence 0 00111222368889988887 588999999999986 7
Q ss_pred eeEEEecCCCccccc---cChhHHHHHHHHhhhc
Q 045335 308 VEMHVLEDAGHWVHA---DNPDGLFRILTSSFEG 338 (339)
Q Consensus 308 ~~~~~i~~~gH~~~~---e~p~~~~~~i~~fl~~ 338 (339)
+.++.+.++||+--. ....+....+.+|+.+
T Consensus 145 s~lv~~g~~GHiN~~sG~g~wpeg~~~l~~~~s~ 178 (181)
T COG3545 145 SALVDVGEGGHINAESGFGPWPEGYALLAQLLSR 178 (181)
T ss_pred HhheecccccccchhhcCCCcHHHHHHHHHHhhh
Confidence 899999999997643 3345556666666653
No 123
>KOG1515 consensus Arylacetamide deacetylase [Defense mechanisms]
Probab=98.90 E-value=7.6e-07 Score=76.30 Aligned_cols=105 Identities=16% Similarity=0.107 Sum_probs=76.1
Q ss_pred CCCCeEEEEcCCCC---C--hhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC--CCCHHHHHHHHHHHHHH------c
Q 045335 67 PDPPTAVLLHGILG---S--RKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG--LTTVASTALDVLKLVAQ------L 133 (339)
Q Consensus 67 ~~~~~vv~lHG~~~---~--~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~--~~~~~~~a~dl~~~l~~------l 133 (339)
...|.||++||.|- + ...+..+...+++.. +.-|+++|+| ..+.. +..++|-.+.+..+.++ .
T Consensus 88 ~~~p~lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~-~~vvvSVdYR---LAPEh~~Pa~y~D~~~Al~w~~~~~~~~~~~ 163 (336)
T KOG1515|consen 88 TKLPVLVYFHGGGFCLGSANSPAYDSFCTRLAAEL-NCVVVSVDYR---LAPEHPFPAAYDDGWAALKWVLKNSWLKLGA 163 (336)
T ss_pred cCceEEEEEeCCccEeCCCCCchhHHHHHHHHHHc-CeEEEecCcc---cCCCCCCCccchHHHHHHHHHHHhHHHHhCC
Confidence 35688999999873 2 467788888888876 7788889988 33222 35677777777776664 2
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccC---CCCCCceEEEEeccCC
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAK---PLARPVRVWVLDATPG 175 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~---~~~~v~~lv~l~~~~~ 175 (339)
+.++++|+|-|.||.+|..+|.+.-+ ...++++.+++-+...
T Consensus 164 D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~ 208 (336)
T KOG1515|consen 164 DPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQ 208 (336)
T ss_pred CcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccC
Confidence 44789999999999999999987642 1236778888866543
No 124
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.88 E-value=3.6e-08 Score=80.52 Aligned_cols=105 Identities=21% Similarity=0.224 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCC--CCCCCHHHHHHHHHHHHH-Hc------CCCce
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRK--GGLTTVASTALDVLKLVA-QL------RITPR 138 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~--~~~~~~~~~a~dl~~~l~-~l------~~~~~ 138 (339)
.=|.|||+||+......|..++..++.+ ||-|+.+|+...+... .......++++++.+=++ .+ +..++
T Consensus 16 ~yPVv~f~~G~~~~~s~Ys~ll~hvASh--GyIVV~~d~~~~~~~~~~~~~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l 93 (259)
T PF12740_consen 16 TYPVVLFLHGFLLINSWYSQLLEHVASH--GYIVVAPDLYSIGGPDDTDEVASAAEVIDWLAKGLESKLPLGVKPDFSKL 93 (259)
T ss_pred CcCEEEEeCCcCCCHHHHHHHHHHHHhC--ceEEEEecccccCCCCcchhHHHHHHHHHHHHhcchhhccccccccccce
Confidence 4689999999998888889999999998 9999999976644311 111223333333333111 11 34689
Q ss_pred EEEEEchhHHHHHHHHHHccC--CCCCCceEEEEeccC
Q 045335 139 VLVGHSFGGKVVLSMVEQAAK--PLARPVRVWVLDATP 174 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~~p~--~~~~v~~lv~l~~~~ 174 (339)
.|.|||-||-+|..++..+-+ .-.+++.++++++.-
T Consensus 94 ~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 94 ALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred EEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 999999999999999988722 111677999998864
No 125
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=98.86 E-value=9.5e-08 Score=81.67 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=57.2
Q ss_pred CCCCCeEEEEcCCCCChhh--------------H----HHHHHHHHHhCCCceEEEEeeCCCCCCCCC-------CCCHH
Q 045335 66 IPDPPTAVLLHGILGSRKN--------------W----GTFARRLARAYPTWQTCDVMVIPHQSRKGG-------LTTVA 120 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~~~--------------~----~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-------~~~~~ 120 (339)
.+.-|+||++||-++..+. | ..+...|+++ ||-|+++|.+|+|+.... .++.+
T Consensus 112 ~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g~~LAk~--GYVvla~D~~g~GER~~~e~~~~~~~~~~~ 189 (390)
T PF12715_consen 112 KGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYGDQLAKR--GYVVLAPDALGFGERGDMEGAAQGSNYDCQ 189 (390)
T ss_dssp -S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HHHHHHTT--TSEEEEE--TTSGGG-SSCCCTTTTS--HH
T ss_pred CCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHHHHHHhC--CCEEEEEccccccccccccccccccchhHH
Confidence 3456899999998876532 1 1346678887 999999999999966221 12222
Q ss_pred HH---------------HHHHHHHHHHc------CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEE
Q 045335 121 ST---------------ALDVLKLVAQL------RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVL 170 (339)
Q Consensus 121 ~~---------------a~dl~~~l~~l------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l 170 (339)
.+ +-|....++.| ..+++.++|+||||..++.+|+.-+ +|...+..
T Consensus 190 ~la~~~l~lG~S~~G~~~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd----RIka~v~~ 256 (390)
T PF12715_consen 190 ALARNLLMLGRSLAGLMAWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD----RIKATVAN 256 (390)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T----T--EEEEE
T ss_pred HHHHHHHHcCcCHHHHHHHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch----hhHhHhhh
Confidence 22 22333344444 2257999999999999999999865 55455443
No 126
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=98.83 E-value=4.3e-08 Score=78.59 Aligned_cols=106 Identities=18% Similarity=0.210 Sum_probs=77.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC---CCHHHHHHHHHHHHHHc-------CCCc
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL---TTVASTALDVLKLVAQL-------RITP 137 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~---~~~~~~a~dl~~~l~~l-------~~~~ 137 (339)
.=|.|+|+||+......|..++..++.+ ||=|+++++-.-- ..... .+....++++.+-++++ ++.+
T Consensus 45 ~yPVilF~HG~~l~ns~Ys~lL~HIASH--GfIVVAPQl~~~~-~p~~~~Ei~~aa~V~~WL~~gL~~~Lp~~V~~nl~k 121 (307)
T PF07224_consen 45 TYPVILFLHGFNLYNSFYSQLLAHIASH--GFIVVAPQLYTLF-PPDGQDEIKSAASVINWLPEGLQHVLPENVEANLSK 121 (307)
T ss_pred CccEEEEeechhhhhHHHHHHHHHHhhc--CeEEEechhhccc-CCCchHHHHHHHHHHHHHHhhhhhhCCCCcccccce
Confidence 3588999999999999999999999998 9999999987531 11111 22333344444444333 4578
Q ss_pred eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCC
Q 045335 138 RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKV 177 (339)
Q Consensus 138 ~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~ 177 (339)
+.++|||.||-.|..+|..+.-.+ .+..+|-+|+..+..
T Consensus 122 lal~GHSrGGktAFAlALg~a~~l-kfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 122 LALSGHSRGGKTAFALALGYATSL-KFSALIGIDPVAGTS 160 (307)
T ss_pred EEEeecCCccHHHHHHHhcccccC-chhheecccccCCCC
Confidence 999999999999999999885322 677888888865443
No 127
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=98.82 E-value=6.8e-07 Score=66.16 Aligned_cols=99 Identities=23% Similarity=0.231 Sum_probs=74.3
Q ss_pred CeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCC-----CCCC---CCHHHHHHHHHHHHHHcCCCceE
Q 045335 70 PTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSR-----KGGL---TTVASTALDVLKLVAQLRITPRV 139 (339)
Q Consensus 70 ~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S-----~~~~---~~~~~~a~dl~~~l~~l~~~~~~ 139 (339)
-+||+-||.+++. .....+...|+.. |+.|.-++++-.-.- .+++ .-...+...+.++...+.-.+.+
T Consensus 15 ~tilLaHGAGasmdSt~m~~~a~~la~~--G~~vaRfefpYma~Rrtg~rkPp~~~~t~~~~~~~~~aql~~~l~~gpLi 92 (213)
T COG3571 15 VTILLAHGAGASMDSTSMTAVAAALARR--GWLVARFEFPYMAARRTGRRKPPPGSGTLNPEYIVAIAQLRAGLAEGPLI 92 (213)
T ss_pred EEEEEecCCCCCCCCHHHHHHHHHHHhC--ceeEEEeecchhhhccccCCCCcCccccCCHHHHHHHHHHHhcccCCcee
Confidence 4789999999875 4556778888887 899999998755322 1121 33557777788888888878999
Q ss_pred EEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 140 LVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 140 lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+-||||||-++..+|..... .|..+++++-+
T Consensus 93 ~GGkSmGGR~aSmvade~~A---~i~~L~clgYP 123 (213)
T COG3571 93 IGGKSMGGRVASMVADELQA---PIDGLVCLGYP 123 (213)
T ss_pred eccccccchHHHHHHHhhcC---CcceEEEecCc
Confidence 99999999999999876544 56677777543
No 128
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=98.81 E-value=1.1e-07 Score=76.73 Aligned_cols=114 Identities=20% Similarity=0.139 Sum_probs=74.3
Q ss_pred EEeeccCCCCC--CCCeEEEEcCCCCChhhHHHH--HHHHHHhCCCceEEEEeeCCCCCC-------C----CCCCCHHH
Q 045335 57 RWSSMMDKSIP--DPPTAVLLHGILGSRKNWGTF--ARRLARAYPTWQTCDVMVIPHQSR-------K----GGLTTVAS 121 (339)
Q Consensus 57 ~~~~~g~~~~~--~~~~vv~lHG~~~~~~~~~~~--~~~L~~~~~g~~vi~~D~~G~G~S-------~----~~~~~~~~ 121 (339)
.|..+-+.+.+ ..|.||++||.+.+...+... ...|++.+ ||-|+.++....... . ...-....
T Consensus 2 ~Y~lYvP~~~~~~~~PLVv~LHG~~~~a~~~~~~s~~~~lAd~~-GfivvyP~~~~~~~~~~cw~w~~~~~~~g~~d~~~ 80 (220)
T PF10503_consen 2 SYRLYVPPGAPRGPVPLVVVLHGCGQSAEDFAAGSGWNALADRE-GFIVVYPEQSRRANPQGCWNWFSDDQQRGGGDVAF 80 (220)
T ss_pred cEEEecCCCCCCCCCCEEEEeCCCCCCHHHHHhhcCHHHHhhcC-CeEEEcccccccCCCCCcccccccccccCccchhh
Confidence 34444443322 357899999999999877543 46788887 889998886422100 0 00112233
Q ss_pred HHHHHHHHHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 122 TALDVLKLVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 122 ~a~dl~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
+++-+.++....++ .++++.|+|.||+.+..++..|||+ +.++.+.++.+
T Consensus 81 i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~---faa~a~~sG~~ 132 (220)
T PF10503_consen 81 IAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDL---FAAVAVVSGVP 132 (220)
T ss_pred HHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCcc---ceEEEeecccc
Confidence 33444445555555 5799999999999999999999994 44666665543
No 129
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=98.80 E-value=5.3e-08 Score=78.98 Aligned_cols=98 Identities=17% Similarity=0.163 Sum_probs=75.9
Q ss_pred EEcCCC--CChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH-cCCCceEEEEEchhHHHH
Q 045335 74 LLHGIL--GSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ-LRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 74 ~lHG~~--~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~-l~~~~~~lvGhS~Gg~ia 150 (339)
|+|+.+ ++...|..+...|...+ .++++|++|+|.+.....+++.+++.+...+.. ...++++++|||+||.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~l~~~~---~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~g~s~Gg~~a 78 (212)
T smart00824 2 CFPSTAAPSGPHEYARLAAALRGRR---DVSALPLPGFGPGEPLPASADALVEAQAEAVLRAAGGRPFVLVGHSSGGLLA 78 (212)
T ss_pred ccCCCCCCCcHHHHHHHHHhcCCCc---cEEEecCCCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCeEEEEECHHHHHH
Confidence 556544 67788999999998765 999999999998876677888888877665544 445789999999999999
Q ss_pred HHHHHHccCCCCCCceEEEEeccC
Q 045335 151 LSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 151 ~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
..++.+..+....+.++++++..+
T Consensus 79 ~~~a~~l~~~~~~~~~l~~~~~~~ 102 (212)
T smart00824 79 HAVAARLEARGIPPAAVVLLDTYP 102 (212)
T ss_pred HHHHHHHHhCCCCCcEEEEEccCC
Confidence 999987554322677888777643
No 130
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.77 E-value=6.6e-07 Score=77.49 Aligned_cols=116 Identities=20% Similarity=0.134 Sum_probs=72.3
Q ss_pred EEEeeccC--CCCCCCCeEEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHH
Q 045335 56 VRWSSMMD--KSIPDPPTAVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLV 130 (339)
Q Consensus 56 l~~~~~g~--~~~~~~~~vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l 130 (339)
+.+..+.+ ......|+||++||.+- +..........+.... |+.|+++|+|=.-+- +-+..+++..+.+..+.
T Consensus 64 ~~~~~y~p~~~~~~~~p~vly~HGGg~~~g~~~~~~~~~~~~~~~~-g~~vv~vdYrlaPe~-~~p~~~~d~~~a~~~l~ 141 (312)
T COG0657 64 VPVRVYRPDRKAAATAPVVLYLHGGGWVLGSLRTHDALVARLAAAA-GAVVVSVDYRLAPEH-PFPAALEDAYAAYRWLR 141 (312)
T ss_pred eeEEEECCCCCCCCCCcEEEEEeCCeeeecChhhhHHHHHHHHHHc-CCEEEecCCCCCCCC-CCCchHHHHHHHHHHHH
Confidence 33444443 34445899999999773 4455545666666654 999999999833322 12244555444444444
Q ss_pred HH---cC--CCceEEEEEchhHHHHHHHHHHccCC-CCCCceEEEEecc
Q 045335 131 AQ---LR--ITPRVLVGHSFGGKVVLSMVEQAAKP-LARPVRVWVLDAT 173 (339)
Q Consensus 131 ~~---l~--~~~~~lvGhS~Gg~ia~~~a~~~p~~-~~~v~~lv~l~~~ 173 (339)
++ ++ .+++.|+|+|.||.+++.++..-.+. .......+++.+.
T Consensus 142 ~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~ 190 (312)
T COG0657 142 ANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPL 190 (312)
T ss_pred hhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecc
Confidence 33 33 46799999999999999999876542 1123455666544
No 131
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=98.77 E-value=6.4e-08 Score=79.44 Aligned_cols=90 Identities=21% Similarity=0.226 Sum_probs=60.3
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhC--CCceEEEEeeCCCCCCCC---CCCCHHHHHHHHHHHHHH----cCCCc
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAY--PTWQTCDVMVIPHQSRKG---GLTTVASTALDVLKLVAQ----LRITP 137 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~--~g~~vi~~D~~G~G~S~~---~~~~~~~~a~dl~~~l~~----l~~~~ 137 (339)
+++..+||+||+..+-..-..-...+...+ +| .++.+.||+.|.-.. ...+...-+..+.++|+. .+.++
T Consensus 16 ~~~~vlvfVHGyn~~f~~a~~r~aql~~~~~~~~-~~i~FsWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~~~~~~~ 94 (233)
T PF05990_consen 16 PDKEVLVFVHGYNNSFEDALRRAAQLAHDLGFPG-VVILFSWPSDGSLLGYFYDRESARFSGPALARFLRDLARAPGIKR 94 (233)
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCc-eEEEEEcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHhccCCce
Confidence 357899999999998655444444444443 23 799999999885311 112233334444444444 46689
Q ss_pred eEEEEEchhHHHHHHHHHHc
Q 045335 138 RVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 138 ~~lvGhS~Gg~ia~~~a~~~ 157 (339)
++|++||||+.+.+......
T Consensus 95 I~ilaHSMG~rv~~~aL~~l 114 (233)
T PF05990_consen 95 IHILAHSMGNRVLLEALRQL 114 (233)
T ss_pred EEEEEeCchHHHHHHHHHHH
Confidence 99999999999999887653
No 132
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=98.77 E-value=1.7e-07 Score=82.52 Aligned_cols=100 Identities=22% Similarity=0.322 Sum_probs=59.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC-CC-C----CC-----C-------C-----C-C-----
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH-QS-R----KG-----G-------L-----T-T----- 118 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~-G~-S----~~-----~-------~-----~-~----- 118 (339)
.-|.|||-||++++...+..+...|+.+ ||-|+++|.|.. +. + +. . . + .
T Consensus 99 ~~PvvIFSHGlgg~R~~yS~~~~eLAS~--GyVV~aieHrDgSa~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (379)
T PF03403_consen 99 KFPVVIFSHGLGGSRTSYSAICGELASH--GYVVAAIEHRDGSAPATYFMRDGSGAEVEPYVVEYLEEEWIPLRDFDPEE 176 (379)
T ss_dssp -EEEEEEE--TT--TTTTHHHHHHHHHT--T-EEEEE---SS-SSEEEE-SSHHHHHHT---------EEEE-----GGG
T ss_pred CCCEEEEeCCCCcchhhHHHHHHHHHhC--CeEEEEeccCCCceeEEEeccCCCccccccccccccccceeccccccchh
Confidence 3588999999999999999999999998 999999999943 21 0 00 0 0 0 0
Q ss_pred --------HHHHHHHHHHHHHHc--------------------------CCCceEEEEEchhHHHHHHHHHHccCCCCCC
Q 045335 119 --------VASTALDVLKLVAQL--------------------------RITPRVLVGHSFGGKVVLSMVEQAAKPLARP 164 (339)
Q Consensus 119 --------~~~~a~dl~~~l~~l--------------------------~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v 164 (339)
++.-++++..+++.+ +.+++.++|||+||+.++..+.+. . ++
T Consensus 177 ~~~~R~~QL~~R~~Ei~~~l~~L~~i~~G~~~~~~l~~~~~l~~~~grlD~~~i~~~GHSFGGATa~~~l~~d-~---r~ 252 (379)
T PF03403_consen 177 EFELRNAQLRQRVAEIQFVLDALEEINSGDPVENVLPSSFDLSQFKGRLDLSRIGLAGHSFGGATALQALRQD-T---RF 252 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----SS--SS-GGGGTT-EEEEEEEEEEETHHHHHHHHHHHH--T---T-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccCCccCHHHHhhhcchhheeeeecCchHHHHHHHHhhc-c---Cc
Confidence 001123333333222 235789999999999999888776 3 77
Q ss_pred ceEEEEecc
Q 045335 165 VRVWVLDAT 173 (339)
Q Consensus 165 ~~lv~l~~~ 173 (339)
+..|++|+.
T Consensus 253 ~~~I~LD~W 261 (379)
T PF03403_consen 253 KAGILLDPW 261 (379)
T ss_dssp -EEEEES--
T ss_pred ceEEEeCCc
Confidence 789999875
No 133
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=98.77 E-value=2.2e-07 Score=83.92 Aligned_cols=124 Identities=17% Similarity=0.221 Sum_probs=79.3
Q ss_pred eeEEeee---CeeEEEeeccCCC-CCCCCeEEEEcCCCCChhhHHHHHH-------------------HHHHhCCCceEE
Q 045335 46 LAYDLIQ---GTLVRWSSMMDKS-IPDPPTAVLLHGILGSRKNWGTFAR-------------------RLARAYPTWQTC 102 (339)
Q Consensus 46 ~~~~~~~---g~~l~~~~~g~~~-~~~~~~vv~lHG~~~~~~~~~~~~~-------------------~L~~~~~g~~vi 102 (339)
..|..++ +..++|..+...+ ..++|.||++.|.++++..|..+.+ .+.+ -.+++
T Consensus 13 sGyl~~~~~~~~~lfyw~~~s~~~~~~~Pl~~wlnGGPG~SS~~g~f~e~GP~~~~~~~~~~l~~n~~sW~~---~an~l 89 (415)
T PF00450_consen 13 SGYLPVNDNENAHLFYWFFESRNDPEDDPLILWLNGGPGCSSMWGLFGENGPFRINPDGPYTLEDNPYSWNK---FANLL 89 (415)
T ss_dssp EEEEEECTTTTEEEEEEEEE-SSGGCSS-EEEEEE-TTTB-THHHHHCTTSSEEEETTSTSEEEE-TT-GGG---TSEEE
T ss_pred EEEEecCCCCCcEEEEEEEEeCCCCCCccEEEEecCCceeccccccccccCceEEeeccccccccccccccc---ccceE
Confidence 3455555 7778887776544 3467899999999999988754421 1111 25899
Q ss_pred EEeeC-CCCCCCCC-----CCCHHHHHHHHHHHHHHc-------CCCceEEEEEchhHHHHHHHHHHc---cC-----CC
Q 045335 103 DVMVI-PHQSRKGG-----LTTVASTALDVLKLVAQL-------RITPRVLVGHSFGGKVVLSMVEQA---AK-----PL 161 (339)
Q Consensus 103 ~~D~~-G~G~S~~~-----~~~~~~~a~dl~~~l~~l-------~~~~~~lvGhS~Gg~ia~~~a~~~---p~-----~~ 161 (339)
.+|.| |-|.|... ..+.++.|+++.++|... .-.+++|.|.|+||..+-.+|..- .. .+
T Consensus 90 ~iD~PvGtGfS~~~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~i 169 (415)
T PF00450_consen 90 FIDQPVGTGFSYGNDPSDYVWNDDQAAEDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKI 169 (415)
T ss_dssp EE--STTSTT-EESSGGGGS-SHHHHHHHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTS
T ss_pred EEeecCceEEeeccccccccchhhHHHHHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhcccccccccc
Confidence 99955 99988322 247889999998888764 445899999999999877776532 21 12
Q ss_pred CCCceEEEEecc
Q 045335 162 ARPVRVWVLDAT 173 (339)
Q Consensus 162 ~~v~~lv~l~~~ 173 (339)
.++++++.++.
T Consensus 170 -nLkGi~IGng~ 180 (415)
T PF00450_consen 170 -NLKGIAIGNGW 180 (415)
T ss_dssp -EEEEEEEESE-
T ss_pred -ccccceecCcc
Confidence 46677766654
No 134
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=98.72 E-value=1.8e-08 Score=86.70 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=62.9
Q ss_pred CCCCCeEEEEcCCCCCh--hhHH-HHHHHHHHhC-CCceEEEEeeCCCCCCCCCCC-----CHHHHHHHHHHHHHHc---
Q 045335 66 IPDPPTAVLLHGILGSR--KNWG-TFARRLARAY-PTWQTCDVMVIPHQSRKGGLT-----TVASTALDVLKLVAQL--- 133 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~--~~~~-~~~~~L~~~~-~g~~vi~~D~~G~G~S~~~~~-----~~~~~a~dl~~~l~~l--- 133 (339)
++.+|++|++|||.++. ..|. .+...|.+.- .+++||++|+...-.. .| ....+++.|..+|+.|
T Consensus 68 n~~~pt~iiiHGw~~~~~~~~~~~~~~~all~~~~~d~NVI~VDWs~~a~~---~Y~~a~~n~~~vg~~la~~l~~L~~~ 144 (331)
T PF00151_consen 68 NPSKPTVIIIHGWTGSGSSESWIQDMIKALLQKDTGDYNVIVVDWSRGASN---NYPQAVANTRLVGRQLAKFLSFLINN 144 (331)
T ss_dssp -TTSEEEEEE--TT-TT-TTTHHHHHHHHHHCC--S-EEEEEEE-HHHHSS----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEcCcCCcccchhHHHHHHHHHHhhccCCceEEEEcchhhccc---cccchhhhHHHHHHHHHHHHHHHHhh
Confidence 44689999999999887 4664 4445444330 1679999999633211 12 2233334444444332
Q ss_pred ---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 134 ---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 134 ---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
..++++|||||+||.+|-..+..... -.++.++.-||++..
T Consensus 145 ~g~~~~~ihlIGhSLGAHvaG~aG~~~~~-~~ki~rItgLDPAgP 188 (331)
T PF00151_consen 145 FGVPPENIHLIGHSLGAHVAGFAGKYLKG-GGKIGRITGLDPAGP 188 (331)
T ss_dssp H---GGGEEEEEETCHHHHHHHHHHHTTT----SSEEEEES-B-T
T ss_pred cCCChhHEEEEeeccchhhhhhhhhhccC-cceeeEEEecCcccc
Confidence 34789999999999999988887765 236779999998743
No 135
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=98.64 E-value=3.9e-06 Score=67.14 Aligned_cols=107 Identities=18% Similarity=0.132 Sum_probs=77.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhC-CCc--eEEEEeeCCC----CCCCC-------------CCCCHHHHHHHHHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAY-PTW--QTCDVMVIPH----QSRKG-------------GLTTVASTALDVLK 128 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~-~g~--~vi~~D~~G~----G~S~~-------------~~~~~~~~a~dl~~ 128 (339)
.-|.|||||.++++.+....+..|..++ -+- -++.+|--|- |.=++ ...+..+++.++..
T Consensus 45 ~iPTIfIhGsgG~asS~~~Mv~ql~~~~~~~~e~Lt~~V~~dgslk~tGk~~Kd~~nP~I~~gfe~n~~s~~~~s~wlk~ 124 (288)
T COG4814 45 AIPTIFIHGSGGTASSLNGMVNQLLPDYKAGTESLTMTVDVDGSLKVTGKISKDAKNPIIEFGFEDNTASGLDQSKWLKK 124 (288)
T ss_pred ccceEEEecCCCChhHHHHHHHHhhhcccccccceEEEEcCCCcEEEeeeecccCCCCeEEEEEecCcCchhhHHHHHHH
Confidence 3478999999999999999999998875 121 2344554441 10000 12467788888888
Q ss_pred HHHHc----CCCceEEEEEchhHHHHHHHHHHccCC--CCCCceEEEEeccCC
Q 045335 129 LVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKP--LARPVRVWVLDATPG 175 (339)
Q Consensus 129 ~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~--~~~v~~lv~l~~~~~ 175 (339)
+|..| +++++.+|||||||.-...|+..+... +..+.++|.++++..
T Consensus 125 ~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg~dks~P~lnK~V~l~gpfN 177 (288)
T COG4814 125 AMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYGDDKSLPPLNKLVSLAGPFN 177 (288)
T ss_pred HHHHHHHhcCCceeeeeeeccccHHHHHHHHHhcCCCCCcchhheEEeccccc
Confidence 88766 778999999999999999999877542 335678888877643
No 136
>KOG2551 consensus Phospholipase/carboxyhydrolase [Amino acid transport and metabolism]
Probab=98.64 E-value=2e-06 Score=67.55 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=42.6
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
+|.|.|.|+.| .+++......+++. ++++.++.-|| ||+++..+ .+.+.|.+||+
T Consensus 164 ~PSLHi~G~~D-------~iv~~~~s~~L~~~-~~~a~vl~Hpg-gH~VP~~~--~~~~~i~~fi~ 218 (230)
T KOG2551|consen 164 TPSLHIFGETD-------TIVPSERSEQLAES-FKDATVLEHPG-GHIVPNKA--KYKEKIADFIQ 218 (230)
T ss_pred CCeeEEecccc-------eeecchHHHHHHHh-cCCCeEEecCC-CccCCCch--HHHHHHHHHHH
Confidence 89999999997 57788888999987 58887666666 99999766 44555555554
No 137
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=98.58 E-value=2.5e-07 Score=75.34 Aligned_cols=84 Identities=17% Similarity=0.304 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHH---hCCCceEEEEeeCCCCCC-CCCCCCHHHH----HHHHHHHHHHcCC--Cce
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLAR---AYPTWQTCDVMVIPHQSR-KGGLTTVAST----ALDVLKLVAQLRI--TPR 138 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~---~~~g~~vi~~D~~G~G~S-~~~~~~~~~~----a~dl~~~l~~l~~--~~~ 138 (339)
...|||+||+.++...|..+...+.. .+++-+++ ..++... .....+++.. ++.|.+.++.... .++
T Consensus 4 ~hLvV~vHGL~G~~~d~~~~~~~l~~~~~~~~~~~i~---~~~~~~n~~~T~~gI~~~g~rL~~eI~~~~~~~~~~~~~I 80 (217)
T PF05057_consen 4 VHLVVFVHGLWGNPADMRYLKNHLEKIPEDLPNARIV---VLGYSNNEFKTFDGIDVCGERLAEEILEHIKDYESKIRKI 80 (217)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHhhhhcchhhhh---hhcccccccccchhhHHHHHHHHHHHHHhccccccccccc
Confidence 56799999999999999888777766 33222222 2222211 1122344544 4444455444444 379
Q ss_pred EEEEEchhHHHHHHHHH
Q 045335 139 VLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~ 155 (339)
.+|||||||.++-.+..
T Consensus 81 sfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 81 SFIGHSLGGLIARYALG 97 (217)
T ss_pred eEEEecccHHHHHHHHH
Confidence 99999999999865544
No 138
>KOG4627 consensus Kynurenine formamidase [Amino acid transport and metabolism]
Probab=98.58 E-value=7e-07 Score=68.97 Aligned_cols=105 Identities=14% Similarity=0.101 Sum_probs=62.6
Q ss_pred EeeccCCCCCCCCeEEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH----HH
Q 045335 58 WSSMMDKSIPDPPTAVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK----LV 130 (339)
Q Consensus 58 ~~~~g~~~~~~~~~vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~----~l 130 (339)
.-.+|+ ....|..||+||..- +...-..+...+.+. ||+|..+ ||+.++. ..+++....++.. ++
T Consensus 58 VDIwg~--~~~~klfIfIHGGYW~~g~rk~clsiv~~a~~~--gY~vasv---gY~l~~q-~htL~qt~~~~~~gv~fil 129 (270)
T KOG4627|consen 58 VDIWGS--TNQAKLFIFIHGGYWQEGDRKMCLSIVGPAVRR--GYRVASV---GYNLCPQ-VHTLEQTMTQFTHGVNFIL 129 (270)
T ss_pred EEEecC--CCCccEEEEEecchhhcCchhcccchhhhhhhc--CeEEEEe---ccCcCcc-cccHHHHHHHHHHHHHHHH
Confidence 344454 236899999999642 222222333333333 6788887 5666643 2455544444433 44
Q ss_pred HHcC-CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 131 AQLR-ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 131 ~~l~-~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
+... .+++.+-|||.|+.+|+....+.-+ .+|.+++++++
T Consensus 130 k~~~n~k~l~~gGHSaGAHLa~qav~R~r~--prI~gl~l~~G 170 (270)
T KOG4627|consen 130 KYTENTKVLTFGGHSAGAHLAAQAVMRQRS--PRIWGLILLCG 170 (270)
T ss_pred HhcccceeEEEcccchHHHHHHHHHHHhcC--chHHHHHHHhh
Confidence 4443 3557788999999999998876433 16666666644
No 139
>KOG3975 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.54 E-value=1.3e-05 Score=63.93 Aligned_cols=105 Identities=18% Similarity=0.195 Sum_probs=82.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCC-CceEEEEeeCCCCCCC-----------CCCCCHHHHHHHHHHHHHHcC-
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYP-TWQTCDVMVIPHQSRK-----------GGLTTVASTALDVLKLVAQLR- 134 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~-g~~vi~~D~~G~G~S~-----------~~~~~~~~~a~dl~~~l~~l~- 134 (339)
+++.+++++|.++....|.++...|..... .+.++.+-..||-.-+ .+.++++++++.=.++++..-
T Consensus 28 ~~~li~~IpGNPG~~gFY~~F~~~L~~~l~~r~~~wtIsh~~H~~~P~sl~~~~s~~~~eifsL~~QV~HKlaFik~~~P 107 (301)
T KOG3975|consen 28 DKPLIVWIPGNPGLLGFYTEFARHLHLNLIDRLPVWTISHAGHALMPASLREDHSHTNEEIFSLQDQVDHKLAFIKEYVP 107 (301)
T ss_pred CceEEEEecCCCCchhHHHHHHHHHHHhcccccceeEEeccccccCCcccccccccccccccchhhHHHHHHHHHHHhCC
Confidence 578899999999999999999988877662 2568998888886322 134899999999999998773
Q ss_pred -CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 135 -ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 135 -~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
..+++++|||-|+...+.+.-...+.+ +|.+.+++-++
T Consensus 108 k~~ki~iiGHSiGaYm~Lqil~~~k~~~-~vqKa~~LFPT 146 (301)
T KOG3975|consen 108 KDRKIYIIGHSIGAYMVLQILPSIKLVF-SVQKAVLLFPT 146 (301)
T ss_pred CCCEEEEEecchhHHHHHHHhhhccccc-ceEEEEEecch
Confidence 368999999999999999987544333 67787777554
No 140
>PLN02633 palmitoyl protein thioesterase family protein
Probab=98.49 E-value=2.3e-05 Score=65.43 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=69.2
Q ss_pred CCeEEEEcCCCCChh--hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH---cCCCceEEEEE
Q 045335 69 PPTAVLLHGILGSRK--NWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ---LRITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~--~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~---l~~~~~~lvGh 143 (339)
..|+|+.||+|++.. ....+.+.+ +..+|..+.++.. |-+....--..+.++++.+.+.+.. +. +-+++||+
T Consensus 25 ~~P~ViwHG~GD~c~~~g~~~~~~l~-~~~~g~~~~~i~i-g~~~~~s~~~~~~~Qve~vce~l~~~~~l~-~G~naIGf 101 (314)
T PLN02633 25 SVPFIMLHGIGTQCSDATNANFTQLL-TNLSGSPGFCLEI-GNGVGDSWLMPLTQQAEIACEKVKQMKELS-QGYNIVGR 101 (314)
T ss_pred CCCeEEecCCCcccCCchHHHHHHHH-HhCCCCceEEEEE-CCCccccceeCHHHHHHHHHHHHhhchhhh-CcEEEEEE
Confidence 568999999998753 444555555 5566778888765 3331111113556666666555544 33 45999999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|-||.++-.++.+.|+.. .|..+|.++++
T Consensus 102 SQGGlflRa~ierc~~~p-~V~nlISlggp 130 (314)
T PLN02633 102 SQGNLVARGLIEFCDGGP-PVYNYISLAGP 130 (314)
T ss_pred ccchHHHHHHHHHCCCCC-CcceEEEecCC
Confidence 999999999999998721 57889998876
No 141
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.45 E-value=3.1e-06 Score=69.53 Aligned_cols=122 Identities=18% Similarity=0.112 Sum_probs=85.0
Q ss_pred EeeeCeeEEEeeccCCCCC-CCCeEEEEcCCCCChhhHHHHH--HHHHHhCCCceEEEEeeC-------CCCCCCCC---
Q 045335 49 DLIQGTLVRWSSMMDKSIP-DPPTAVLLHGILGSRKNWGTFA--RRLARAYPTWQTCDVMVI-------PHQSRKGG--- 115 (339)
Q Consensus 49 ~~~~g~~l~~~~~g~~~~~-~~~~vv~lHG~~~~~~~~~~~~--~~L~~~~~g~~vi~~D~~-------G~G~S~~~--- 115 (339)
...+|....|..+-+.+.+ ..|.||.+||..++....+... +.|++.. ||-|+.+|-- +++.+..+
T Consensus 40 ~~~~g~~r~y~l~vP~g~~~~apLvv~LHG~~~sgag~~~~sg~d~lAd~~-gFlV~yPdg~~~~wn~~~~~~~~~p~~~ 118 (312)
T COG3509 40 FDVNGLKRSYRLYVPPGLPSGAPLVVVLHGSGGSGAGQLHGTGWDALADRE-GFLVAYPDGYDRAWNANGCGNWFGPADR 118 (312)
T ss_pred cccCCCccceEEEcCCCCCCCCCEEEEEecCCCChHHhhcccchhhhhccc-CcEEECcCccccccCCCcccccCCcccc
Confidence 3446666666666554433 4578899999999998877765 7888887 8999998522 12222111
Q ss_pred ---CCCHHHHHHHHHHHHHHcCCC--ceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 116 ---LTTVASTALDVLKLVAQLRIT--PRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 116 ---~~~~~~~a~dl~~~l~~l~~~--~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
.-.+..+++-+..++.+.+++ +|++.|.|-||..+..++..+|+.+ .++.++.+..
T Consensus 119 ~~g~ddVgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~f---aa~A~VAg~~ 179 (312)
T COG3509 119 RRGVDDVGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIF---AAIAPVAGLL 179 (312)
T ss_pred cCCccHHHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCcccc---cceeeeeccc
Confidence 123445566666667777776 7999999999999999999999954 4666665543
No 142
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=98.45 E-value=3.3e-06 Score=70.92 Aligned_cols=91 Identities=18% Similarity=0.120 Sum_probs=68.7
Q ss_pred CCCCCeEEEEcCCCCChhhH------HHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc-----C
Q 045335 66 IPDPPTAVLLHGILGSRKNW------GTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL-----R 134 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~~~~------~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l-----~ 134 (339)
......||+.-|.++.-+.- ...+..+++.. +-+|+.+++||.|.|.... +.++++.|-.+.++.| |
T Consensus 134 a~~~RWiL~s~GNg~~~E~~~~~~~~~~~~~~~ak~~-~aNvl~fNYpGVg~S~G~~-s~~dLv~~~~a~v~yL~d~~~G 211 (365)
T PF05677_consen 134 AKPQRWILVSNGNGECYENRAMLDYKDDWIQRFAKEL-GANVLVFNYPGVGSSTGPP-SRKDLVKDYQACVRYLRDEEQG 211 (365)
T ss_pred CCCCcEEEEEcCChHHhhhhhhhccccHHHHHHHHHc-CCcEEEECCCccccCCCCC-CHHHHHHHHHHHHHHHHhcccC
Confidence 34678999999988766541 23455666665 7799999999999996655 5688888877777665 2
Q ss_pred C--CceEEEEEchhHHHHHHHHHHcc
Q 045335 135 I--TPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 135 ~--~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+ +.+.+-|||+||.++.+.+.++.
T Consensus 212 ~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 212 PKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred CChheEEEeeccccHHHHHHHHHhcc
Confidence 2 57899999999999998666553
No 143
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=98.45 E-value=7.7e-06 Score=65.15 Aligned_cols=83 Identities=13% Similarity=0.047 Sum_probs=56.1
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
+..|||..||+++...+.++. +.+.+ . -++++|++-. +++. | --+.+.+.|||+|||-.
T Consensus 11 ~~LilfF~GWg~d~~~f~hL~--~~~~~-D-~l~~yDYr~l--------~~d~---~------~~~y~~i~lvAWSmGVw 69 (213)
T PF04301_consen 11 KELILFFAGWGMDPSPFSHLI--LPENY-D-VLICYDYRDL--------DFDF---D------LSGYREIYLVAWSMGVW 69 (213)
T ss_pred CeEEEEEecCCCChHHhhhcc--CCCCc-c-EEEEecCccc--------cccc---c------cccCceEEEEEEeHHHH
Confidence 578999999999998887663 22333 1 4567887722 2210 1 12347899999999999
Q ss_pred HHHHHHHHccCCCCCCceEEEEeccCCCC
Q 045335 149 VVLSMVEQAAKPLARPVRVWVLDATPGKV 177 (339)
Q Consensus 149 ia~~~a~~~p~~~~~v~~lv~l~~~~~~~ 177 (339)
+|..+.... .+.+.+.+++++.+.
T Consensus 70 ~A~~~l~~~-----~~~~aiAINGT~~Pi 93 (213)
T PF04301_consen 70 AANRVLQGI-----PFKRAIAINGTPYPI 93 (213)
T ss_pred HHHHHhccC-----CcceeEEEECCCCCc
Confidence 988876543 445777888876554
No 144
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=98.45 E-value=7.3e-07 Score=77.45 Aligned_cols=102 Identities=21% Similarity=0.180 Sum_probs=78.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCce---EEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEch
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQ---TCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSF 145 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~---vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~ 145 (339)
.-+++++||++.+...|..+...+... |+. ++.+++++-..........+.+..-+.+++...+.+++.|+||||
T Consensus 59 ~~pivlVhG~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~ql~~~V~~~l~~~ga~~v~LigHS~ 136 (336)
T COG1075 59 KEPIVLVHGLGGGYGNFLPLDYRLAIL--GWLTNGVYAFELSGGDGTYSLAVRGEQLFAYVDEVLAKTGAKKVNLIGHSM 136 (336)
T ss_pred CceEEEEccCcCCcchhhhhhhhhcch--HHHhcccccccccccCCCccccccHHHHHHHHHHHHhhcCCCceEEEeecc
Confidence 458999999988888888777666554 555 888888866333333456666677777777788889999999999
Q ss_pred hHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 146 GGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 146 Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
||.+...++..++.. .+|...+.++++
T Consensus 137 GG~~~ry~~~~~~~~-~~V~~~~tl~tp 163 (336)
T COG1075 137 GGLDSRYYLGVLGGA-NRVASVVTLGTP 163 (336)
T ss_pred cchhhHHHHhhcCcc-ceEEEEEEeccC
Confidence 999999999998843 277788888766
No 145
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=98.44 E-value=8.3e-07 Score=72.01 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHc-C--CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 122 TALDVLKLVAQL-R--ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 122 ~a~dl~~~l~~l-~--~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
+-+...++|.+. . -+++.|+|.|.||-+|+.+|+.+| .|..+|.++++.
T Consensus 5 yfe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~----~i~avVa~~ps~ 56 (213)
T PF08840_consen 5 YFEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFP----QISAVVAISPSS 56 (213)
T ss_dssp HHHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSS----SEEEEEEES--S
T ss_pred HHHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCC----CccEEEEeCCce
Confidence 444555556554 2 258999999999999999999998 455777776654
No 146
>KOG2100 consensus Dipeptidyl aminopeptidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.42 E-value=2.2e-05 Score=75.34 Aligned_cols=124 Identities=16% Similarity=0.151 Sum_probs=83.7
Q ss_pred CcceeEEeeeCeeEEEeeccCCC---CCCCCeEEEEcCCCCCh-------hhHHHHHHHHHHhCCCceEEEEeeCCCCCC
Q 045335 43 SGVLAYDLIQGTLVRWSSMMDKS---IPDPPTAVLLHGILGSR-------KNWGTFARRLARAYPTWQTCDVMVIPHQSR 112 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~~g~~~---~~~~~~vv~lHG~~~~~-------~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S 112 (339)
........++|....+...-+++ ...=|.||.+||.+++. -.|..+ +.... |+-|+.+|.||-|..
T Consensus 497 ~~~~~~i~~~~~~~~~~~~lP~~~~~~~kyPllv~~yGGP~sq~v~~~~~~~~~~~---~~s~~-g~~v~~vd~RGs~~~ 572 (755)
T KOG2100|consen 497 IVEFGKIEIDGITANAILILPPNFDPSKKYPLLVVVYGGPGSQSVTSKFSVDWNEV---VVSSR-GFAVLQVDGRGSGGY 572 (755)
T ss_pred cceeEEEEeccEEEEEEEecCCCCCCCCCCCEEEEecCCCCcceeeeeEEecHHHH---hhccC-CeEEEEEcCCCcCCc
Confidence 33344445578887776665432 12235678899998743 234433 45555 889999999998755
Q ss_pred CC----------CCCCHHHHHHHHHHHHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceE-EEEecc
Q 045335 113 KG----------GLTTVASTALDVLKLVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRV-WVLDAT 173 (339)
Q Consensus 113 ~~----------~~~~~~~~a~dl~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~l-v~l~~~ 173 (339)
.. ....++|+...+..+++..-+ +++.+.|+|+||.++..++...|+ .+.+. +.+++.
T Consensus 573 G~~~~~~~~~~lG~~ev~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~---~~fkcgvavaPV 643 (755)
T KOG2100|consen 573 GWDFRSALPRNLGDVEVKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPG---DVFKCGVAVAPV 643 (755)
T ss_pred chhHHHHhhhhcCCcchHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcC---ceEEEEEEecce
Confidence 22 235777888888888776633 579999999999999999999986 33343 555544
No 147
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=98.42 E-value=6e-05 Score=62.61 Aligned_cols=228 Identities=19% Similarity=0.179 Sum_probs=116.4
Q ss_pred eEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCC---ceEEEEEchh
Q 045335 71 TAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRIT---PRVLVGHSFG 146 (339)
Q Consensus 71 ~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~---~~~lvGhS~G 146 (339)
|+|+|=||.+.. ..-.+..+...+ +|++++.+-.+-...-.+ ...+...++.+.+.+...... ++.+=..|.|
T Consensus 1 plvvl~gW~gA~~~hl~KY~~~Y~~--~g~~il~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~il~H~FSnG 77 (240)
T PF05705_consen 1 PLVVLLGWMGAKPKHLAKYSDLYQD--PGFDILLVTSPPADFFWP-SKRLAPAADKLLELLSDSQSASPPPILFHSFSNG 77 (240)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHh--cCCeEEEEeCCHHHHeee-ccchHHHHHHHHHHhhhhccCCCCCEEEEEEECc
Confidence 477888888665 333444444444 488999987653322111 145666677777766665443 7888999998
Q ss_pred HHHHHHHHHH----c---cCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHHcCCchH
Q 045335 147 GKVVLSMVEQ----A---AKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKD 219 (339)
Q Consensus 147 g~ia~~~a~~----~---p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (339)
|...+..... . .....++ +.+++|+.|+..... .....+...++............+........
T Consensus 78 G~~~~~~l~~~~~~~~~~~~~~~~i-~g~I~DS~P~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (240)
T PF05705_consen 78 GSFLYSQLLEAYQSRKKFGKLLPRI-KGIIFDSCPGIPTYS-------SSARAFSAALPKSSPRWFVPLWPLLQFLLRLS 149 (240)
T ss_pred hHHHHHHHHHHHHhccccccccccc-ceeEEeCCCCccccc-------cHHHHHHHHcCccchhhHHHHHHHHHHHHHHH
Confidence 8776665431 1 2222223 555688887654331 11111111121110000000000000000000
Q ss_pred HHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHH
Q 045335 220 VAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEE 299 (339)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~ 299 (339)
.......... ....... ..+..+...+..+|-+++.++.|.++.. ...+...+
T Consensus 150 ---~~~~~~~~~~-----------~~~~~~~---------~~~~~~~~~~~~~p~lylYS~~D~l~~~----~~ve~~~~ 202 (240)
T PF05705_consen 150 ---IISYFIFGYP-----------DVQEYYR---------RALNDFANSPSRCPRLYLYSKADPLIPW----RDVEEHAE 202 (240)
T ss_pred ---HHHHHHhcCC-----------cHHHHHH---------HHHhhhhcCCCCCCeEEecCCCCcCcCH----HHHHHHHH
Confidence 0000000000 0001011 1123344445558999999999854422 22222333
Q ss_pred HHHhCCCCeeEEEecCCCccccc-cChhHHHHHHHHhh
Q 045335 300 LAVDGGGGVEMHVLEDAGHWVHA-DNPDGLFRILTSSF 336 (339)
Q Consensus 300 ~~~~~~~~~~~~~i~~~gH~~~~-e~p~~~~~~i~~fl 336 (339)
.+++..-+++...++++.|..|+ ++|++..+++.+|+
T Consensus 203 ~~~~~G~~V~~~~f~~S~HV~H~r~~p~~Y~~~v~~fw 240 (240)
T PF05705_consen 203 EARRKGWDVRAEKFEDSPHVAHLRKHPDRYWRAVDEFW 240 (240)
T ss_pred HHHHcCCeEEEecCCCCchhhhcccCHHHHHHHHHhhC
Confidence 33333445899999999999998 67999999999986
No 148
>KOG2281 consensus Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=1.4e-05 Score=72.18 Aligned_cols=114 Identities=18% Similarity=0.156 Sum_probs=79.5
Q ss_pred eeEEeeeCeeEEEeeccCC-CCCC--CCeEEEEcCCCCCh---hhHH--HH--HHHHHHhCCCceEEEEeeCCCCCCC--
Q 045335 46 LAYDLIQGTLVRWSSMMDK-SIPD--PPTAVLLHGILGSR---KNWG--TF--ARRLARAYPTWQTCDVMVIPHQSRK-- 113 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~-~~~~--~~~vv~lHG~~~~~---~~~~--~~--~~~L~~~~~g~~vi~~D~~G~G~S~-- 113 (339)
+++....|..++=-.+.+. -++. =|+++++-|.++-. ..|. .. ...|+.. ||-|+++|-||...-.
T Consensus 616 f~fqs~tg~~lYgmiyKPhn~~pgkkYptvl~VYGGP~VQlVnnsfkgi~ylR~~~Lasl--Gy~Vv~IDnRGS~hRGlk 693 (867)
T KOG2281|consen 616 FSFQSKTGLTLYGMIYKPHNFQPGKKYPTVLNVYGGPGVQLVNNSFKGIQYLRFCRLASL--GYVVVFIDNRGSAHRGLK 693 (867)
T ss_pred eeeecCCCcEEEEEEEccccCCCCCCCceEEEEcCCCceEEeeccccceehhhhhhhhhc--ceEEEEEcCCCccccchh
Confidence 4455544444442333222 2222 47999999998753 2332 11 3456666 9999999999975331
Q ss_pred --------CCCCCHHHHHHHHHHHHHHcC---CCceEEEEEchhHHHHHHHHHHccCCC
Q 045335 114 --------GGLTTVASTALDVLKLVAQLR---ITPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 114 --------~~~~~~~~~a~dl~~~l~~l~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
-....++|+++-+.-+.++.+ .++|.+-|||+||.+++...+++|+.+
T Consensus 694 FE~~ik~kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~If 752 (867)
T KOG2281|consen 694 FESHIKKKMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIF 752 (867)
T ss_pred hHHHHhhccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCccee
Confidence 123689999999999999885 478999999999999999999999854
No 149
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=98.37 E-value=0.00019 Score=63.86 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=65.9
Q ss_pred CCCCCeEEEEc-----C--CCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc-----
Q 045335 66 IPDPPTAVLLH-----G--ILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL----- 133 (339)
Q Consensus 66 ~~~~~~vv~lH-----G--~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l----- 133 (339)
++.++|+|.+- | .++.... ..+--.|.. |..|+.+... ..+.+.-|++++......+++.+
T Consensus 65 d~~krP~vViDPRAGHGpGIGGFK~d-SevG~AL~~---GHPvYFV~F~---p~P~pgQTl~DV~~ae~~Fv~~V~~~hp 137 (581)
T PF11339_consen 65 DPTKRPFVVIDPRAGHGPGIGGFKPD-SEVGVALRA---GHPVYFVGFF---PEPEPGQTLEDVMRAEAAFVEEVAERHP 137 (581)
T ss_pred CCCCCCeEEeCCCCCCCCCccCCCcc-cHHHHHHHc---CCCeEEEEec---CCCCCCCcHHHHHHHHHHHHHHHHHhCC
Confidence 44566666663 2 2332221 345556665 4466666543 23345579999887777777655
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVR 178 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~ 178 (339)
+..+++|||.+-||..++.+|+.+|+.+ +-++++++|..+.
T Consensus 138 ~~~kp~liGnCQgGWa~~mlAA~~Pd~~----gplvlaGaPlsyw 178 (581)
T PF11339_consen 138 DAPKPNLIGNCQGGWAAMMLAALRPDLV----GPLVLAGAPLSYW 178 (581)
T ss_pred CCCCceEEeccHHHHHHHHHHhcCcCcc----CceeecCCCcccc
Confidence 2248999999999999999999999844 4456666665443
No 150
>KOG3043 consensus Predicted hydrolase related to dienelactone hydrolase [General function prediction only]
Probab=98.32 E-value=8e-06 Score=64.27 Aligned_cols=89 Identities=12% Similarity=0.109 Sum_probs=57.3
Q ss_pred CCeEEEEcCCCCChhh-HHHHHHHHHHhCCCceEEEEeeC-CCCCCCC-C---------CCCHHHHHHHHHHHH---HHc
Q 045335 69 PPTAVLLHGILGSRKN-WGTFARRLARAYPTWQTCDVMVI-PHQSRKG-G---------LTTVASTALDVLKLV---AQL 133 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~-~~~~~~~L~~~~~g~~vi~~D~~-G~G~S~~-~---------~~~~~~~a~dl~~~l---~~l 133 (339)
+..||.+--+.+.... -+..+..++.. ||.|+.||+- |--.|.. . ..+.+..-.++..++ +..
T Consensus 39 ~~~li~i~DvfG~~~~n~r~~Adk~A~~--Gy~v~vPD~~~Gdp~~~~~~~~~~~~w~~~~~~~~~~~~i~~v~k~lk~~ 116 (242)
T KOG3043|consen 39 KKVLIVIQDVFGFQFPNTREGADKVALN--GYTVLVPDFFRGDPWSPSLQKSERPEWMKGHSPPKIWKDITAVVKWLKNH 116 (242)
T ss_pred CeEEEEEEeeeccccHHHHHHHHHHhcC--CcEEEcchhhcCCCCCCCCChhhhHHHHhcCCcccchhHHHHHHHHHHHc
Confidence 3577777776665533 56777888877 9999999964 4222211 0 122222333344433 344
Q ss_pred C-CCceEEEEEchhHHHHHHHHHHccC
Q 045335 134 R-ITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 134 ~-~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+ .+++-++|.+|||.++..+.+..|+
T Consensus 117 g~~kkIGv~GfCwGak~vv~~~~~~~~ 143 (242)
T KOG3043|consen 117 GDSKKIGVVGFCWGAKVVVTLSAKDPE 143 (242)
T ss_pred CCcceeeEEEEeecceEEEEeeccchh
Confidence 4 4678999999999999988887774
No 151
>KOG2112 consensus Lysophospholipase [Lipid transport and metabolism]
Probab=98.32 E-value=1.1e-05 Score=63.05 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC-------------------CC-CCCCHHHHHHHHHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR-------------------KG-GLTTVASTALDVLK 128 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S-------------------~~-~~~~~~~~a~dl~~ 128 (339)
..+|||+||.+++...|..++..|... ....|++..|-.--+ .. ...++...++.+..
T Consensus 3 ~atIi~LHglGDsg~~~~~~~~~l~l~--NiKwIcP~aP~rpvt~~~G~~~~aWfd~~~~~~~~~~d~~~~~~aa~~i~~ 80 (206)
T KOG2112|consen 3 TATIIFLHGLGDSGSGWAQFLKQLPLP--NIKWICPTAPSRPVTLNGGAFMNAWFDIMELSSDAPEDEEGLHRAADNIAN 80 (206)
T ss_pred eEEEEEEecCCCCCccHHHHHHcCCCC--CeeEEcCCCCCCcccccCCCcccceecceeeCcccchhhhHHHHHHHHHHH
Confidence 458999999999999998887775544 457777754433211 00 11345566777777
Q ss_pred HHHHc---CC--CceEEEEEchhHHHHHHHHHHccC
Q 045335 129 LVAQL---RI--TPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 129 ~l~~l---~~--~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
++++. ++ .++.+-|.|+||++++..+..+|.
T Consensus 81 Li~~e~~~Gi~~~rI~igGfs~G~a~aL~~~~~~~~ 116 (206)
T KOG2112|consen 81 LIDNEPANGIPSNRIGIGGFSQGGALALYSALTYPK 116 (206)
T ss_pred HHHHHHHcCCCccceeEcccCchHHHHHHHHhcccc
Confidence 77764 33 468899999999999999999976
No 152
>COG3150 Predicted esterase [General function prediction only]
Probab=98.24 E-value=8.9e-06 Score=60.83 Aligned_cols=87 Identities=16% Similarity=0.111 Sum_probs=65.4
Q ss_pred EEEEcCCCCChhhHHHHH--HHHHHhCCCceEEEEeeCCCCCC-CCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 72 AVLLHGILGSRKNWGTFA--RRLARAYPTWQTCDVMVIPHQSR-KGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 72 vv~lHG~~~~~~~~~~~~--~~L~~~~~g~~vi~~D~~G~G~S-~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
||.||||.+|..+.+.+. +.+.... |-.+-+ +..+......++.+..++..++-+...|||-|+||.
T Consensus 2 ilYlHGFnSSP~shka~l~~q~~~~~~----------~~i~y~~p~l~h~p~~a~~ele~~i~~~~~~~p~ivGssLGGY 71 (191)
T COG3150 2 ILYLHGFNSSPGSHKAVLLLQFIDEDV----------RDIEYSTPHLPHDPQQALKELEKAVQELGDESPLIVGSSLGGY 71 (191)
T ss_pred eEEEecCCCCcccHHHHHHHHHHhccc----------cceeeecCCCCCCHHHHHHHHHHHHHHcCCCCceEEeecchHH
Confidence 899999999988876543 3333332 222222 345689999999999999999977799999999999
Q ss_pred HHHHHHHHccCCCCCCceEEEEeccC
Q 045335 149 VVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 149 ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
.|..++.++.- +.|+++++.
T Consensus 72 ~At~l~~~~Gi------rav~~NPav 91 (191)
T COG3150 72 YATWLGFLCGI------RAVVFNPAV 91 (191)
T ss_pred HHHHHHHHhCC------hhhhcCCCc
Confidence 99999998743 445676653
No 153
>KOG1553 consensus Predicted alpha/beta hydrolase BAT5 [General function prediction only]
Probab=98.19 E-value=1.5e-05 Score=66.73 Aligned_cols=122 Identities=17% Similarity=0.078 Sum_probs=75.4
Q ss_pred cceeEEeeeCeeEE---EeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHH
Q 045335 44 GVLAYDLIQGTLVR---WSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVA 120 (339)
Q Consensus 44 ~~~~~~~~~g~~l~---~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~ 120 (339)
.+...+..||..|- ..-.+++...+...|||.-|..+.-+.=- +...++- ||.|+.+++||++.|...++-..
T Consensus 215 ~R~kiks~dgneiDtmF~d~r~n~~~ngq~LvIC~EGNAGFYEvG~-m~tP~~l---gYsvLGwNhPGFagSTG~P~p~n 290 (517)
T KOG1553|consen 215 QRLKIKSSDGNEIDTMFLDGRPNQSGNGQDLVICFEGNAGFYEVGV-MNTPAQL---GYSVLGWNHPGFAGSTGLPYPVN 290 (517)
T ss_pred eEEEEeecCCcchhheeecCCCCCCCCCceEEEEecCCccceEeee-ecChHHh---CceeeccCCCCccccCCCCCccc
Confidence 34444555655432 22233322223456788888766432211 1112222 77999999999999966554332
Q ss_pred --HHHHHHHH-HHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 121 --STALDVLK-LVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 121 --~~a~dl~~-~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
..++.+.+ .|+.|+. +.++|.|||.||..+..+|..||+. +.++++++.
T Consensus 291 ~~nA~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV-----kavvLDAtF 344 (517)
T KOG1553|consen 291 TLNAADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV-----KAVVLDATF 344 (517)
T ss_pred chHHHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc-----eEEEeecch
Confidence 23344444 4566655 5799999999999999999999972 566777763
No 154
>KOG3847 consensus Phospholipase A2 (platelet-activating factor acetylhydrolase in humans) [Lipid transport and metabolism]
Probab=98.18 E-value=1.6e-05 Score=65.66 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=37.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCC
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQS 111 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~ 111 (339)
=|.|||-||++++...|..+.-.|+.+ ||-|.+++.|-+-.
T Consensus 118 ~PvvvFSHGLggsRt~YSa~c~~LASh--G~VVaavEHRD~SA 158 (399)
T KOG3847|consen 118 YPVVVFSHGLGGSRTLYSAYCTSLASH--GFVVAAVEHRDRSA 158 (399)
T ss_pred ccEEEEecccccchhhHHHHhhhHhhC--ceEEEEeecccCcc
Confidence 378999999999999999999999998 99999999987653
No 155
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=98.16 E-value=0.00038 Score=59.32 Aligned_cols=67 Identities=16% Similarity=0.053 Sum_probs=42.8
Q ss_pred HHHHHHHhCCCceEEEEeeCCCCCCCCCC----CCHHHHHHHHHHHHHHcCC---CceEEEEEchhHHHHHHHHHH
Q 045335 88 FARRLARAYPTWQTCDVMVIPHQSRKGGL----TTVASTALDVLKLVAQLRI---TPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 88 ~~~~L~~~~~g~~vi~~D~~G~G~S~~~~----~~~~~~a~dl~~~l~~l~~---~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
++..+.++ ||-|+++|+.|.|...-.. +.+-|.++...++....++ .++.++|||-||.-++..|..
T Consensus 18 ~l~~~L~~--GyaVv~pDY~Glg~~y~~~~~~a~avLD~vRAA~~~~~~~gl~~~~~v~l~GySqGG~Aa~~AA~l 91 (290)
T PF03583_consen 18 FLAAWLAR--GYAVVAPDYEGLGTPYLNGRSEAYAVLDAVRAARNLPPKLGLSPSSRVALWGYSQGGQAALWAAEL 91 (290)
T ss_pred HHHHHHHC--CCEEEecCCCCCCCcccCcHhHHHHHHHHHHHHHhcccccCCCCCCCEEEEeeCccHHHHHHHHHH
Confidence 44555555 8999999999999742211 2333333333333333333 479999999999998766643
No 156
>PLN03016 sinapoylglucose-malate O-sinapoyltransferase
Probab=98.13 E-value=0.0014 Score=58.90 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=67.3
Q ss_pred eeEEeee---CeeEEEeeccCCC-CCCCCeEEEEcCCCCChhhHHHH---HHH-------------HHH-hC---CCceE
Q 045335 46 LAYDLIQ---GTLVRWSSMMDKS-IPDPPTAVLLHGILGSRKNWGTF---ARR-------------LAR-AY---PTWQT 101 (339)
Q Consensus 46 ~~~~~~~---g~~l~~~~~g~~~-~~~~~~vv~lHG~~~~~~~~~~~---~~~-------------L~~-~~---~g~~v 101 (339)
..|..++ +..++|....... +...|.|+++.|.++++..+..+ -+. |.. .+ +-.++
T Consensus 39 sGy~~v~~~~~~~lfy~f~es~~~~~~~P~~lWlnGGPG~SS~~g~~~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anl 118 (433)
T PLN03016 39 TGYIGIGEDENVQFFYYFIKSENNPKEDPLLIWLNGGPGCSCLGGIIFENGPVGLKFEVFNGSAPSLFSTTYSWTKMANI 118 (433)
T ss_pred EEEEEecCCCCeEEEEEEEecCCCcccCCEEEEEcCCCcHHHHHHHHHhcCCceeeccccCCCCCceeeCCCchhhcCcE
Confidence 4466664 4667777665433 34578999999999887644222 121 100 00 02589
Q ss_pred EEEe-eCCCCCCCCC---CC-CHHHHHHHHHHHHHH----c---CCCceEEEEEchhHHHHHHHHHH
Q 045335 102 CDVM-VIPHQSRKGG---LT-TVASTALDVLKLVAQ----L---RITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 102 i~~D-~~G~G~S~~~---~~-~~~~~a~dl~~~l~~----l---~~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+.+| ..|.|.|... .. +-++.++++.+++.. . ...+++|.|.|+||..+-.+|..
T Consensus 119 lfiDqPvGtGfSy~~~~~~~~~d~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~la~~ 185 (433)
T PLN03016 119 IFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 185 (433)
T ss_pred EEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhChhhcCCCEEEEccCccceehHHHHHH
Confidence 9999 5689988422 11 111233555555543 2 33679999999999977777654
No 157
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=98.10 E-value=7.8e-06 Score=69.70 Aligned_cols=90 Identities=21% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC--CCCCC---C--CC---CHHHHHHHHHHHHHHc----
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH--QSRKG---G--LT---TVASTALDVLKLVAQL---- 133 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~--G~S~~---~--~~---~~~~~a~dl~~~l~~l---- 133 (339)
.-|.|++-||.++....|..+.+.|++. ||-|.++|.||- |..+. . .+ -+-+-..|+..+|+.|
T Consensus 70 ~~PlvvlshG~Gs~~~~f~~~A~~lAs~--Gf~Va~~~hpgs~~~~~~~~~~~~~~~~p~~~~erp~dis~lLd~L~~~~ 147 (365)
T COG4188 70 LLPLVVLSHGSGSYVTGFAWLAEHLASY--GFVVAAPDHPGSNAGGAPAAYAGPGSYAPAEWWERPLDISALLDALLQLT 147 (365)
T ss_pred cCCeEEecCCCCCCccchhhhHHHHhhC--ceEEEeccCCCcccccCChhhcCCcccchhhhhcccccHHHHHHHHHHhh
Confidence 3588999999999999999999999997 999999999994 43321 1 01 1223333443333332
Q ss_pred ---------CCCceEEEEEchhHHHHHHHHHHccC
Q 045335 134 ---------RITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 134 ---------~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+..+|.++|||+||..+++++....+
T Consensus 148 ~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 148 ASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred cCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 34589999999999999999865544
No 158
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=98.08 E-value=6.5e-05 Score=68.21 Aligned_cols=92 Identities=15% Similarity=0.212 Sum_probs=62.1
Q ss_pred CCCeEEEEcCCCCChh-hH--HHHHHHHHHhCCCceEEEEeeCCCCCCCCC---------CCCHHHHHHHHHHHHHHcC-
Q 045335 68 DPPTAVLLHGILGSRK-NW--GTFARRLARAYPTWQTCDVMVIPHQSRKGG---------LTTVASTALDVLKLVAQLR- 134 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~-~~--~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~---------~~~~~~~a~dl~~~l~~l~- 134 (339)
++|.+|++ |.-++.. .| ..++..|++++ |--+++++.|-||.|.+- -.|.+...+|+..+++.+.
T Consensus 28 ~gpifl~~-ggE~~~~~~~~~~~~~~~lA~~~-~a~~v~lEHRyYG~S~P~~~~s~~nL~yLt~~QALaD~a~F~~~~~~ 105 (434)
T PF05577_consen 28 GGPIFLYI-GGEGPIEPFWINNGFMWELAKEF-GALVVALEHRYYGKSQPFGDLSTENLRYLTSEQALADLAYFIRYVKK 105 (434)
T ss_dssp TSEEEEEE---SS-HHHHHHH-HHHHHHHHHH-TEEEEEE--TTSTTB-TTGGGGGSTTTC-SHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEE-CCCCccchhhhcCChHHHHHHHc-CCcEEEeehhhhcCCCCccccchhhHHhcCHHHHHHHHHHHHHHHHH
Confidence 35655555 4444442 22 34667888888 679999999999999532 1588888899888887653
Q ss_pred ------CCceEEEEEchhHHHHHHHHHHccCCC
Q 045335 135 ------ITPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 135 ------~~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
-.|++++|-|+||++|..+-.+||+.+
T Consensus 106 ~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~~ 138 (434)
T PF05577_consen 106 KYNTAPNSPWIVFGGSYGGALAAWFRLKYPHLF 138 (434)
T ss_dssp HTTTGCC--EEEEEETHHHHHHHHHHHH-TTT-
T ss_pred hhcCCCCCCEEEECCcchhHHHHHHHhhCCCee
Confidence 147999999999999999999999943
No 159
>KOG1282 consensus Serine carboxypeptidases (lysosomal cathepsin A) [Posttranslational modification, protein turnover, chaperones; Amino acid transport and metabolism]
Probab=98.06 E-value=0.00081 Score=60.13 Aligned_cols=108 Identities=15% Similarity=0.127 Sum_probs=70.7
Q ss_pred eEEeee---CeeEEEeeccCCCCC-CCCeEEEEcCCCCChhhHHHHHHHHHH---hCCC-------------ceEEEEee
Q 045335 47 AYDLIQ---GTLVRWSSMMDKSIP-DPPTAVLLHGILGSRKNWGTFARRLAR---AYPT-------------WQTCDVMV 106 (339)
Q Consensus 47 ~~~~~~---g~~l~~~~~g~~~~~-~~~~vv~lHG~~~~~~~~~~~~~~L~~---~~~g-------------~~vi~~D~ 106 (339)
.|..++ +..++|.......++ .+|.||+|.|.++.+..- .++.++.. .+.| -+++-+|.
T Consensus 47 GYv~v~~~~~~~LFYwf~eS~~~P~~dPlvLWLnGGPGCSSl~-G~~~E~GPf~v~~~G~tL~~N~ySWnk~aNiLfLd~ 125 (454)
T KOG1282|consen 47 GYVTVNESEGRQLFYWFFESENNPETDPLVLWLNGGPGCSSLG-GLFEENGPFRVKYNGKTLYLNPYSWNKEANILFLDQ 125 (454)
T ss_pred ceEECCCCCCceEEEEEEEccCCCCCCCEEEEeCCCCCccchh-hhhhhcCCeEEcCCCCcceeCCccccccccEEEEec
Confidence 477776 788998887765554 488999999999877443 22211111 0111 37888997
Q ss_pred C-CCCCCCCCC-----CCHHHHHHHHHHHHHHc-------CCCceEEEEEchhHHHHHHHHH
Q 045335 107 I-PHQSRKGGL-----TTVASTALDVLKLVAQL-------RITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 107 ~-G~G~S~~~~-----~~~~~~a~dl~~~l~~l-------~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
| |-|.|.... .+-+..|+|+..+|... .-.+++|.|.|++|..+-.+|.
T Consensus 126 PvGvGFSYs~~~~~~~~~D~~~A~d~~~FL~~wf~kfPey~~~~fyI~GESYAG~YVP~La~ 187 (454)
T KOG1282|consen 126 PVGVGFSYSNTSSDYKTGDDGTAKDNYEFLQKWFEKFPEYKSNDFYIAGESYAGHYVPALAQ 187 (454)
T ss_pred CCcCCccccCCCCcCcCCcHHHHHHHHHHHHHHHHhChhhcCCCeEEecccccceehHHHHH
Confidence 7 888883221 34556667766665432 4468999999999977666665
No 160
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.04 E-value=5.1e-05 Score=64.33 Aligned_cols=90 Identities=12% Similarity=0.021 Sum_probs=61.0
Q ss_pred CCCCeEEEEcCCCCChh-hHHHHHHHHHHhCCCceEEEEeeCCCCCC-----CC--CCCCHHHHHHHHHHHHHHcCCCce
Q 045335 67 PDPPTAVLLHGILGSRK-NWGTFARRLARAYPTWQTCDVMVIPHQSR-----KG--GLTTVASTALDVLKLVAQLRITPR 138 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~-~~~~~~~~L~~~~~g~~vi~~D~~G~G~S-----~~--~~~~~~~~a~dl~~~l~~l~~~~~ 138 (339)
.++..+||+||+.-+-. .-...++-..+.-.....+.+-||..|.- ++ ..++-..++.-|..+.+....+++
T Consensus 114 ~~k~vlvFvHGfNntf~dav~R~aqI~~d~g~~~~pVvFSWPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I 193 (377)
T COG4782 114 SAKTVLVFVHGFNNTFEDAVYRTAQIVHDSGNDGVPVVFSWPSRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRI 193 (377)
T ss_pred CCCeEEEEEcccCCchhHHHHHHHHHHhhcCCCcceEEEEcCCCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceE
Confidence 46788999999987642 22233333333211237888999988743 11 235666666666666677778899
Q ss_pred EEEEEchhHHHHHHHHHH
Q 045335 139 VLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~ 156 (339)
+|++||||..++++...+
T Consensus 194 ~ilAHSMGtwl~~e~LrQ 211 (377)
T COG4782 194 YLLAHSMGTWLLMEALRQ 211 (377)
T ss_pred EEEEecchHHHHHHHHHH
Confidence 999999999999887654
No 161
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=98.02 E-value=1.7e-05 Score=65.63 Aligned_cols=102 Identities=18% Similarity=0.221 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCC-CCCC---CCHHHHHHHHHHHHHH---cCCCc
Q 045335 68 DPPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSR-KGGL---TTVASTALDVLKLVAQ---LRITP 137 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S-~~~~---~~~~~~a~dl~~~l~~---l~~~~ 137 (339)
...|||+.||++++. ..+..+...+.+.+||..|.+++. |-+.+ +... ..+.++++.+.+.+.. |. +-
T Consensus 4 ~~~PvViwHGmGD~~~~~~~m~~i~~~i~~~~PG~yV~si~i-g~~~~~D~~~s~f~~v~~Qv~~vc~~l~~~p~L~-~G 81 (279)
T PF02089_consen 4 SPLPVVIWHGMGDSCCNPSSMGSIKELIEEQHPGTYVHSIEI-GNDPSEDVENSFFGNVNDQVEQVCEQLANDPELA-NG 81 (279)
T ss_dssp SS--EEEE--TT--S--TTTHHHHHHHHHHHSTT--EEE--S-SSSHHHHHHHHHHSHHHHHHHHHHHHHHH-GGGT-T-
T ss_pred CCCcEEEEEcCccccCChhHHHHHHHHHHHhCCCceEEEEEE-CCCcchhhhhhHHHHHHHHHHHHHHHHhhChhhh-cc
Confidence 456899999999763 467888888888889989999987 33321 1111 3456666666666654 33 46
Q ss_pred eEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 138 RVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 138 ~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+++||+|-||.++-.++.+.|+. .|..+|.++++
T Consensus 82 ~~~IGfSQGgl~lRa~vq~c~~~--~V~nlISlggp 115 (279)
T PF02089_consen 82 FNAIGFSQGGLFLRAYVQRCNDP--PVHNLISLGGP 115 (279)
T ss_dssp EEEEEETCHHHHHHHHHHH-TSS---EEEEEEES--
T ss_pred eeeeeeccccHHHHHHHHHCCCC--CceeEEEecCc
Confidence 99999999999999999999874 67888888776
No 162
>KOG3724 consensus Negative regulator of COPII vesicle formation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.99 E-value=5.5e-05 Score=69.99 Aligned_cols=107 Identities=17% Similarity=0.119 Sum_probs=65.0
Q ss_pred CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCC--------------CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHH
Q 045335 65 SIPDPPTAVLLHGILGSRKNWGTFARRLARAYP--------------TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLV 130 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~--------------g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l 130 (339)
...++-||+||+|..++-.+-+.++..-...|. .|+.+++|.-+- .|.-...++.++++-+.+.|
T Consensus 85 lelsGIPVLFIPGNAGSyKQvRSiAS~a~n~y~~~~~e~t~~~d~~~~~DFFaVDFnEe-~tAm~G~~l~dQtEYV~dAI 163 (973)
T KOG3724|consen 85 LELSGIPVLFIPGNAGSYKQVRSIASVAQNAYQGGPFEKTEDRDNPFSFDFFAVDFNEE-FTAMHGHILLDQTEYVNDAI 163 (973)
T ss_pred ccCCCceEEEecCCCCchHHHHHHHHHHhhhhcCCchhhhhcccCccccceEEEcccch-hhhhccHhHHHHHHHHHHHH
Confidence 455788999999999998776666544442110 245566665320 11112356777776666655
Q ss_pred HHc-----C--------CCceEEEEEchhHHHHHHHHHHccC-CCCCCceEEEEecc
Q 045335 131 AQL-----R--------ITPRVLVGHSFGGKVVLSMVEQAAK-PLARPVRVWVLDAT 173 (339)
Q Consensus 131 ~~l-----~--------~~~~~lvGhS~Gg~ia~~~a~~~p~-~~~~v~~lv~l~~~ 173 (339)
+.. + .+.++||||||||.+|...+. +|. .-+.|.-++.++++
T Consensus 164 k~ILslYr~~~e~~~p~P~sVILVGHSMGGiVAra~~t-lkn~~~~sVntIITlssP 219 (973)
T KOG3724|consen 164 KYILSLYRGEREYASPLPHSVILVGHSMGGIVARATLT-LKNEVQGSVNTIITLSSP 219 (973)
T ss_pred HHHHHHhhcccccCCCCCceEEEEeccchhHHHHHHHh-hhhhccchhhhhhhhcCc
Confidence 432 1 124899999999999987765 443 22245555656554
No 163
>KOG4840 consensus Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=97.97 E-value=7.8e-05 Score=58.61 Aligned_cols=83 Identities=19% Similarity=0.269 Sum_probs=63.2
Q ss_pred CCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC----CceEEE
Q 045335 69 PPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRI----TPRVLV 141 (339)
Q Consensus 69 ~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~----~~~~lv 141 (339)
+..|||+-|++..- ..-.++...|.+. +|.++-+.++.+-. .-...++.+-++|+..++++++. .+++|+
T Consensus 36 ~~~vvfiGGLgdgLl~~~y~~~L~~~lde~--~wslVq~q~~Ssy~-G~Gt~slk~D~edl~~l~~Hi~~~~fSt~vVL~ 112 (299)
T KOG4840|consen 36 SVKVVFIGGLGDGLLICLYTTMLNRYLDEN--SWSLVQPQLRSSYN-GYGTFSLKDDVEDLKCLLEHIQLCGFSTDVVLV 112 (299)
T ss_pred EEEEEEEcccCCCccccccHHHHHHHHhhc--cceeeeeecccccc-ccccccccccHHHHHHHHHHhhccCcccceEEE
Confidence 46799999998764 2335666777776 78999988873211 11246888999999999998754 379999
Q ss_pred EEchhHHHHHHHH
Q 045335 142 GHSFGGKVVLSMV 154 (339)
Q Consensus 142 GhS~Gg~ia~~~a 154 (339)
|||.|+.-.+.|.
T Consensus 113 GhSTGcQdi~yYl 125 (299)
T KOG4840|consen 113 GHSTGCQDIMYYL 125 (299)
T ss_pred ecCccchHHHHHH
Confidence 9999999998887
No 164
>KOG3253 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=97.97 E-value=9.5e-05 Score=66.48 Aligned_cols=162 Identities=16% Similarity=0.170 Sum_probs=98.8
Q ss_pred CCCeEEEEcCCC-C---Ch--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHH--------Hc
Q 045335 68 DPPTAVLLHGIL-G---SR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVA--------QL 133 (339)
Q Consensus 68 ~~~~vv~lHG~~-~---~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~--------~l 133 (339)
..|.++++||.+ . +. ..|........+. ..+-.+|++.- ....++..-++.+..+.+ ++
T Consensus 175 ~spl~i~aps~p~ap~tSd~~~~wqs~lsl~gev---vev~tfdl~n~----igG~nI~h~ae~~vSf~r~kvlei~gef 247 (784)
T KOG3253|consen 175 ASPLAIKAPSTPLAPKTSDRMWSWQSRLSLKGEV---VEVPTFDLNNP----IGGANIKHAAEYSVSFDRYKVLEITGEF 247 (784)
T ss_pred CCceEEeccCCCCCCccchHHHhHHHHHhhhcee---eeeccccccCC----CCCcchHHHHHHHHHHhhhhhhhhhccC
Confidence 357889999998 2 11 2333333333322 36667777622 122566666666666655 23
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCCCChHHHHHHhhcCCccccChHHHHHHHHH
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGEDHPAELIHFLSKLPKEVISKQEVVNALIQ 213 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (339)
...+++|+|.|||+.++.+.+.-.-+. .|..+|.++-+ ....... .
T Consensus 248 pha~IiLvGrsmGAlVachVSpsnsdv--~V~~vVCigyp-l~~vdgp-----------------------r-------- 293 (784)
T KOG3253|consen 248 PHAPIILVGRSMGALVACHVSPSNSDV--EVDAVVCIGYP-LDTVDGP-----------------------R-------- 293 (784)
T ss_pred CCCceEEEecccCceeeEEeccccCCc--eEEEEEEeccc-ccCCCcc-----------------------c--------
Confidence 446899999999988888887655441 24455544322 1110000 0
Q ss_pred cCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhhhhcCCCCceeeEEeccchhhhhhhhhHHH
Q 045335 214 QGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKLVENLPQGVHVNFLKAERSLHRWALEDIQR 293 (339)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~ 293 (339)
.. . + +.+-.+. .|+||+.|..| ..++
T Consensus 294 -gi------------r-----------------D---------------E~Lldmk--~PVLFV~Gsnd-------~mcs 319 (784)
T KOG3253|consen 294 -GI------------R-----------------D---------------EALLDMK--QPVLFVIGSND-------HMCS 319 (784)
T ss_pred -CC------------c-----------------c---------------hhhHhcC--CceEEEecCCc-------ccCC
Confidence 00 0 0 1111222 79999999987 5788
Q ss_pred HHHHHHHHHhCCCCeeEEEecCCCccccccC
Q 045335 294 IHAAEELAVDGGGGVEMHVLEDAGHWVHADN 324 (339)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~ 324 (339)
+..++++.++.....+++++.+++|.+-.-.
T Consensus 320 pn~ME~vreKMqA~~elhVI~~adhsmaipk 350 (784)
T KOG3253|consen 320 PNSMEEVREKMQAEVELHVIGGADHSMAIPK 350 (784)
T ss_pred HHHHHHHHHHhhccceEEEecCCCccccCCc
Confidence 8888888888777899999999999886643
No 165
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.96 E-value=4.1e-05 Score=64.03 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCeEEEEcCCCCChhhH--HHHHHHHHHhC--CCceEEEEeeCCCCCC----C---------CCCC---C-HHHHHHHH
Q 045335 68 DPPTAVLLHGILGSRKNW--GTFARRLARAY--PTWQTCDVMVIPHQSR----K---------GGLT---T-VASTALDV 126 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~--~~~~~~L~~~~--~g~~vi~~D~~G~G~S----~---------~~~~---~-~~~~a~dl 126 (339)
.=|.|+++||.......+ ...+..+.+.. +-.-+++++..+.+.. . .... . .+-+.++|
T Consensus 23 ~~PvlylldG~~~~~~~~~~~~~~~~~~~~~~~~~~iiV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~el 102 (251)
T PF00756_consen 23 PYPVLYLLDGQSGWFRNGNAQEALDRLIAEGKIPPMIIVVIPNGDNSRFYTSWYLPAGSSRRADDSGGGDAYETFLTEEL 102 (251)
T ss_dssp TEEEEEEESHTTHHHHHHHHHHHHHHHHHHHTSEEEEEEEEESSSTSSTTSBTTSSBCTTCBCTSTTTHHHHHHHHHTHH
T ss_pred CCEEEEEccCCccccccchHHHHHHHHHHhCCCCceEEEEEecccccccccccccccccccccccCCCCcccceehhccc
Confidence 347889999983222222 23344444442 1123556665555411 0 0011 1 23345677
Q ss_pred HHHHHHc-CC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 127 LKLVAQL-RI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 127 ~~~l~~l-~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
..+|++. .+ ++..|+|+||||..|+.++.+||+.+ .+++.+++.
T Consensus 103 ~p~i~~~~~~~~~~~~i~G~S~GG~~Al~~~l~~Pd~F---~~~~~~S~~ 149 (251)
T PF00756_consen 103 IPYIEANYRTDPDRRAIAGHSMGGYGALYLALRHPDLF---GAVIAFSGA 149 (251)
T ss_dssp HHHHHHHSSEEECCEEEEEETHHHHHHHHHHHHSTTTE---SEEEEESEE
T ss_pred hhHHHHhcccccceeEEeccCCCcHHHHHHHHhCcccc---ccccccCcc
Confidence 7776654 32 22799999999999999999999954 477777654
No 166
>PLN02606 palmitoyl-protein thioesterase
Probab=97.94 E-value=0.00023 Score=59.61 Aligned_cols=101 Identities=17% Similarity=0.128 Sum_probs=67.0
Q ss_pred CCeEEEEcCCC--CChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH---cCCCceEEEEE
Q 045335 69 PPTAVLLHGIL--GSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ---LRITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~--~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~---l~~~~~~lvGh 143 (339)
..|||+.||++ .+...+..+.+.+.+ .+|..+.++. .|-|....--..+.++++.+.+.+.. +. +-+++||+
T Consensus 26 ~~PvViwHGlgD~~~~~~~~~~~~~i~~-~~~~pg~~v~-ig~~~~~s~~~~~~~Qv~~vce~l~~~~~L~-~G~naIGf 102 (306)
T PLN02606 26 SVPFVLFHGFGGECSNGKVSNLTQFLIN-HSGYPGTCVE-IGNGVQDSLFMPLRQQASIACEKIKQMKELS-EGYNIVAE 102 (306)
T ss_pred CCCEEEECCCCcccCCchHHHHHHHHHh-CCCCCeEEEE-ECCCcccccccCHHHHHHHHHHHHhcchhhc-CceEEEEE
Confidence 56899999999 455677777777742 2244455554 33232111113455666555555543 33 45999999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|-||.++-.++.+.|+. ..|..+|.++++
T Consensus 103 SQGglflRa~ierc~~~-p~V~nlISlggp 131 (306)
T PLN02606 103 SQGNLVARGLIEFCDNA-PPVINYVSLGGP 131 (306)
T ss_pred cchhHHHHHHHHHCCCC-CCcceEEEecCC
Confidence 99999999999999872 158899998776
No 167
>KOG2541 consensus Palmitoyl protein thioesterase [Lipid transport and metabolism; Posttranslational modification, protein turnover, chaperones]
Probab=97.90 E-value=0.00027 Score=57.36 Aligned_cols=100 Identities=18% Similarity=0.211 Sum_probs=73.3
Q ss_pred CCeEEEEcCCCCChhh--HHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHH---HcCCCceEEEEE
Q 045335 69 PPTAVLLHGILGSRKN--WGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVA---QLRITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~--~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~---~l~~~~~~lvGh 143 (339)
..|+|++||++++... ...+.+.+.+ .+|..|+++|. |-|.-..--..+.++++.+.+.+. .+. +-+++||.
T Consensus 23 ~~P~ii~HGigd~c~~~~~~~~~q~l~~-~~g~~v~~lei-g~g~~~s~l~pl~~Qv~~~ce~v~~m~~ls-qGynivg~ 99 (296)
T KOG2541|consen 23 PVPVIVWHGIGDSCSSLSMANLTQLLEE-LPGSPVYCLEI-GDGIKDSSLMPLWEQVDVACEKVKQMPELS-QGYNIVGY 99 (296)
T ss_pred cCCEEEEeccCcccccchHHHHHHHHHh-CCCCeeEEEEe-cCCcchhhhccHHHHHHHHHHHHhcchhcc-CceEEEEE
Confidence 3689999999988765 7888888888 67999999996 555111112345555555554444 332 45899999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|-||.++-.++..-++. .|...|.++++
T Consensus 100 SQGglv~Raliq~cd~p--pV~n~ISL~gP 127 (296)
T KOG2541|consen 100 SQGGLVARALIQFCDNP--PVKNFISLGGP 127 (296)
T ss_pred ccccHHHHHHHHhCCCC--CcceeEeccCC
Confidence 99999999999988772 77888888776
No 168
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.83 E-value=0.00019 Score=63.93 Aligned_cols=116 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred eEEeeeCeeEEEeeccCCCCCCCCeEEEEc-CCCCChhhHHHHHHHHHHhCCCce----EEE--EeeCCCCCCCCCCCCH
Q 045335 47 AYDLIQGTLVRWSSMMDKSIPDPPTAVLLH-GILGSRKNWGTFARRLARAYPTWQ----TCD--VMVIPHQSRKGGLTTV 119 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~~~~~~~~vv~lH-G~~~~~~~~~~~~~~L~~~~~g~~----vi~--~D~~G~G~S~~~~~~~ 119 (339)
.+...+|+.++.-..|. ...|-.+- .+......|..+++.|.+. ||. +++ +|+| .+ ....
T Consensus 33 ~~~~~~gv~i~~~~~g~-----~~~i~~ld~~~~~~~~~~~~li~~L~~~--GY~~~~~l~~~pYDWR---~~---~~~~ 99 (389)
T PF02450_consen 33 HYSNDPGVEIRVPGFGG-----TSGIEYLDPSFITGYWYFAKLIENLEKL--GYDRGKDLFAAPYDWR---LS---PAER 99 (389)
T ss_pred ceecCCCceeecCCCCc-----eeeeeecccccccccchHHHHHHHHHhc--CcccCCEEEEEeechh---hc---hhhH
Confidence 34445566666654442 11222221 2222223899999999874 542 222 5766 11 1134
Q ss_pred HHHHHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCC---CCCCceEEEEeccCC
Q 045335 120 ASTALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKP---LARPVRVWVLDATPG 175 (339)
Q Consensus 120 ~~~a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~---~~~v~~lv~l~~~~~ 175 (339)
+++...|.++++.. ..++++||||||||.++..+....+.. -..|.++|.++++..
T Consensus 100 ~~~~~~lk~~ie~~~~~~~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~~ 161 (389)
T PF02450_consen 100 DEYFTKLKQLIEEAYKKNGKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPFG 161 (389)
T ss_pred HHHHHHHHHHHHHHHHhcCCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCCC
Confidence 46666666666543 347999999999999999999888652 135778888877643
No 169
>COG4099 Predicted peptidase [General function prediction only]
Probab=97.82 E-value=0.00032 Score=57.78 Aligned_cols=114 Identities=17% Similarity=0.161 Sum_probs=66.9
Q ss_pred eeCeeEEEeeccCCC-CCC--C-CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC-------------CCC
Q 045335 51 IQGTLVRWSSMMDKS-IPD--P-PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ-------------SRK 113 (339)
Q Consensus 51 ~~g~~l~~~~~g~~~-~~~--~-~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G-------------~S~ 113 (339)
--|..+-|..+-+.. +++ - |.|||+||.+..+..=... |.. |.--++.+.|-++ .++
T Consensus 169 ~tgneLkYrly~Pkdy~pdkky~PLvlfLHgagq~g~dn~~~---l~s---g~gaiawa~pedqcfVlAPQy~~if~d~e 242 (387)
T COG4099 169 STGNELKYRLYTPKDYAPDKKYYPLVLFLHGAGQGGSDNDKV---LSS---GIGAIAWAGPEDQCFVLAPQYNPIFADSE 242 (387)
T ss_pred ccCceeeEEEecccccCCCCccccEEEEEecCCCCCchhhhh---hhc---CccceeeecccCceEEEcccccccccccc
Confidence 347788888886632 222 2 7899999999876432221 111 1123333333332 121
Q ss_pred C-CCCCHHHHHHHHH-HHHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 114 G-GLTTVASTALDVL-KLVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 114 ~-~~~~~~~~a~dl~-~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
. +..-.....+-+. .+.++.++ .+++++|.|+||.-++.++.++|+.+ .+.+++++.
T Consensus 243 ~~t~~~l~~~idli~~vlas~ynID~sRIYviGlSrG~~gt~al~~kfPdfF---Aaa~~iaG~ 303 (387)
T COG4099 243 EKTLLYLIEKIDLILEVLASTYNIDRSRIYVIGLSRGGFGTWALAEKFPDFF---AAAVPIAGG 303 (387)
T ss_pred cccchhHHHHHHHHHHHHhhccCcccceEEEEeecCcchhhHHHHHhCchhh---heeeeecCC
Confidence 1 1122233334444 33445565 47999999999999999999999944 466666553
No 170
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=97.76 E-value=0.0019 Score=55.55 Aligned_cols=101 Identities=14% Similarity=0.165 Sum_probs=66.7
Q ss_pred CCeEEEEcCCCCChh---hHHHHHHHHHHhCCCceEEEEeeCC--CCCCC------------------CCC---------
Q 045335 69 PPTAVLLHGILGSRK---NWGTFARRLARAYPTWQTCDVMVIP--HQSRK------------------GGL--------- 116 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~---~~~~~~~~L~~~~~g~~vi~~D~~G--~G~S~------------------~~~--------- 116 (339)
.-.||+|||.+.+.. .-.++-..|.+. ||..+++.+|. ..... .+.
T Consensus 87 ~G~vIilp~~g~~~d~p~~i~~LR~~L~~~--GW~Tlsit~P~~~~~~~p~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 164 (310)
T PF12048_consen 87 QGAVIILPDWGEHPDWPGLIAPLRRELPDH--GWATLSITLPDPAPPASPNRATEAEEVPSAGDQQLSQPSDEPSPASAQ 164 (310)
T ss_pred ceEEEEecCCCCCCCcHhHHHHHHHHhhhc--CceEEEecCCCcccccCCccCCCCCCCCCCCCCCcCCCCCCCcccccc
Confidence 448999999998762 334555566555 99999999997 11000 000
Q ss_pred --CCHHHHH-------HHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 117 --TTVASTA-------LDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 117 --~~~~~~a-------~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
-....+. +.+.+++.+.+.++++||||+.|+..++.+....+.. .+.++|++++.
T Consensus 165 ~~~~~~~~~~~~~ari~Aa~~~~~~~~~~~ivlIg~G~gA~~~~~~la~~~~~--~~daLV~I~a~ 228 (310)
T PF12048_consen 165 EAEAREAYEERLFARIEAAIAFAQQQGGKNIVLIGHGTGAGWAARYLAEKPPP--MPDALVLINAY 228 (310)
T ss_pred HhHHhHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeChhHHHHHHHHhcCCCc--ccCeEEEEeCC
Confidence 0111222 2333344445656699999999999999999988753 46799999864
No 171
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=97.76 E-value=0.00045 Score=61.79 Aligned_cols=118 Identities=17% Similarity=0.091 Sum_probs=66.2
Q ss_pred CeeEEEeeccCCC--CCCCCeEEEEcCCCCChh-hHHHHHHHHHHhC--CCceEEEEeeCCC-CCCCC-C--CCCHHHHH
Q 045335 53 GTLVRWSSMMDKS--IPDPPTAVLLHGILGSRK-NWGTFARRLARAY--PTWQTCDVMVIPH-QSRKG-G--LTTVASTA 123 (339)
Q Consensus 53 g~~l~~~~~g~~~--~~~~~~vv~lHG~~~~~~-~~~~~~~~L~~~~--~g~~vi~~D~~G~-G~S~~-~--~~~~~~~a 123 (339)
|....+..|-+.+ ...-|.|+++||-.-... .-...++.|.+.. +-.-++.+|..+. .++.. + ..-.+.++
T Consensus 191 g~~r~v~VY~P~~y~~~~~PvlyllDG~~w~~~~~~~~~ld~li~~g~i~P~ivV~id~~~~~~R~~el~~~~~f~~~l~ 270 (411)
T PRK10439 191 GNSRRVWIYTTGDAAPEERPLAILLDGQFWAESMPVWPALDSLTHRGQLPPAVYLLIDAIDTTHRSQELPCNADFWLAVQ 270 (411)
T ss_pred CCceEEEEEECCCCCCCCCCEEEEEECHHhhhcCCHHHHHHHHHHcCCCCceEEEEECCCCcccccccCCchHHHHHHHH
Confidence 4444444444332 234588899999542111 1123345555442 1123566765321 11110 0 11133445
Q ss_pred HHHHHHHHHc-----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 124 LDVLKLVAQL-----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 124 ~dl~~~l~~l-----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
++|.-++++. +.++.+|+|+||||..|+.++.++|+. +.+++.++++
T Consensus 271 ~eLlP~I~~~y~~~~d~~~~~IaG~S~GGl~AL~~al~~Pd~---Fg~v~s~Sgs 322 (411)
T PRK10439 271 QELLPQVRAIAPFSDDADRTVVAGQSFGGLAALYAGLHWPER---FGCVLSQSGS 322 (411)
T ss_pred HHHHHHHHHhCCCCCCccceEEEEEChHHHHHHHHHHhCccc---ccEEEEeccc
Confidence 6666666654 235689999999999999999999994 4477776654
No 172
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=97.75 E-value=0.00057 Score=59.25 Aligned_cols=121 Identities=17% Similarity=0.116 Sum_probs=75.6
Q ss_pred EEeec-cCC-CCCCCCeEEEEcCCCCChhhHH---HHHHHHHHhCCCceEEEEeeCCCC---CCCCCCCCHHHHHHHHHH
Q 045335 57 RWSSM-MDK-SIPDPPTAVLLHGILGSRKNWG---TFARRLARAYPTWQTCDVMVIPHQ---SRKGGLTTVASTALDVLK 128 (339)
Q Consensus 57 ~~~~~-g~~-~~~~~~~vv~lHG~~~~~~~~~---~~~~~L~~~~~g~~vi~~D~~G~G---~S~~~~~~~~~~a~dl~~ 128 (339)
.|... +.. .+..+|.||++||.|-.-.... ..+..+...++...++++|..-.. ....-+.-+.+.++-...
T Consensus 108 ~Wlvk~P~~~~pk~DpVlIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yPtQL~qlv~~Y~~ 187 (374)
T PF10340_consen 108 YWLVKAPNRFKPKSDPVLIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYPTQLRQLVATYDY 187 (374)
T ss_pred EEEEeCCcccCCCCCcEEEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccccccCCCcCchHHHHHHHHHHH
Confidence 45444 332 2335799999999875432221 112222222333488888876544 333334566677777777
Q ss_pred HHHHcCCCceEEEEEchhHHHHHHHHHHcc--CCCCCCceEEEEeccCCCC
Q 045335 129 LVAQLRITPRVLVGHSFGGKVVLSMVEQAA--KPLARPVRVWVLDATPGKV 177 (339)
Q Consensus 129 ~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p--~~~~~v~~lv~l~~~~~~~ 177 (339)
+++..+.++++|+|-|.||.+++.+.+... +...-.++++++++.....
T Consensus 188 Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 188 LVESEGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred HHhccCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 887778899999999999999998876322 2122356888887765443
No 173
>PF10142 PhoPQ_related: PhoPQ-activated pathogenicity-related protein; InterPro: IPR009199 Proteins in this entry are believed to play a role in virulence/pathogenicity in Salmonella. Salmonella typhi PqaA has been shown to be activated by PhoP/Q two-component regulatory system, which regulates many virulence genes []. It has been also shown to confer resistance to antimicrobial peptides (melittin) []. Members of this family are predicted to belong to the alpha/beta hydrolase domain superfamily.
Probab=97.65 E-value=0.001 Score=57.98 Aligned_cols=218 Identities=12% Similarity=0.033 Sum_probs=124.5
Q ss_pred CCCCCeEEEEcCCC------CChhhHHHHHHHHHHhCCCceEEEEeeCCCCC----CCC---CC----CCHHH-------
Q 045335 66 IPDPPTAVLLHGIL------GSRKNWGTFARRLARAYPTWQTCDVMVIPHQS----RKG---GL----TTVAS------- 121 (339)
Q Consensus 66 ~~~~~~vv~lHG~~------~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~----S~~---~~----~~~~~------- 121 (339)
...+..+|++.|.. .........+..++....-.-++..+-|..-. ... ++ ||+..
T Consensus 61 ~~~~~all~i~gG~~~~~~~~~~~~~~~~~~~~A~~t~siv~~l~qvPNQpl~f~~d~~~r~ED~iIAytW~~fl~~~d~ 140 (367)
T PF10142_consen 61 KNPDTALLFITGGSNRNWPGPPPDFDDELLQMIARATGSIVAILYQVPNQPLTFDNDPKPRTEDAIIAYTWRKFLETGDP 140 (367)
T ss_pred CCCceEEEEEECCcccCCCCCCCcchHHHHHHHHHhcCCEEEEeCcCCCCCeEeCCCCccccHHHHHHHHHHHHhccCCc
Confidence 34567889998876 11233455667777765223444445554321 111 00 22221
Q ss_pred --------------HHHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCCCcCCCCCC
Q 045335 122 --------------TALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGKVRAGGDGE 184 (339)
Q Consensus 122 --------------~a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~~~~~~~~~ 184 (339)
--+-+.+++++. .+++++|.|.|==|..++..|+.- . ||++++-+......
T Consensus 141 ~w~l~~PMtka~vrAMD~vq~~~~~~~~~~i~~FvV~GaSKRGWTtWltaa~D-~---RV~aivP~Vid~LN-------- 208 (367)
T PF10142_consen 141 EWPLHLPMTKAAVRAMDAVQEFLKKKFGVNIEKFVVTGASKRGWTTWLTAAVD-P---RVKAIVPIVIDVLN-------- 208 (367)
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHhhcCCCccEEEEeCCchHhHHHHHhhccC-c---ceeEEeeEEEccCC--------
Confidence 123344455554 678999999999999999999843 4 67677655332111
Q ss_pred CChHHHHHHhhcCCccccChHHHHHHHHHcCCchHHHHHHHHhccCCCCCCCCCCccceechHHHHHHHhhhhhhhhhhh
Q 045335 185 DHPAELIHFLSKLPKEVISKQEVVNALIQQGFSKDVAQWVVTNLKPAASFGASSSFSWVFDLEGIAEMYQSYDETNLWKL 264 (339)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (339)
....+....+... ..++..+..+....+.. ..+-+....+.+......+.+.
T Consensus 209 -~~~~l~h~y~~yG---------------~~ws~a~~dY~~~gi~~------------~l~tp~f~~L~~ivDP~~Y~~r 260 (367)
T PF10142_consen 209 -MKANLEHQYRSYG---------------GNWSFAFQDYYNEGITQ------------QLDTPEFDKLMQIVDPYSYRDR 260 (367)
T ss_pred -cHHHHHHHHHHhC---------------CCCccchhhhhHhCchh------------hcCCHHHHHHHHhcCHHHHHHh
Confidence 1111111111111 12233333333333322 1223344444444444444444
Q ss_pred hhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 265 VENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 265 ~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+ . +|.++|.|..| ++..+....-+..++.....+..+|+++|..-. ..+.+.|..|+..
T Consensus 261 L---~--~PK~ii~atgD-------eFf~pD~~~~y~d~L~G~K~lr~vPN~~H~~~~---~~~~~~l~~f~~~ 319 (367)
T PF10142_consen 261 L---T--MPKYIINATGD-------EFFVPDSSNFYYDKLPGEKYLRYVPNAGHSLIG---SDVVQSLRAFYNR 319 (367)
T ss_pred c---C--ccEEEEecCCC-------ceeccCchHHHHhhCCCCeeEEeCCCCCcccch---HHHHHHHHHHHHH
Confidence 3 3 89999999988 777788888888886556788899999999876 6667777777753
No 174
>KOG1551 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=0.0014 Score=53.19 Aligned_cols=56 Identities=18% Similarity=0.160 Sum_probs=40.5
Q ss_pred eeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccc-cccChhHHHHHHHHhhhc
Q 045335 274 VNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWV-HADNPDGLFRILTSSFEG 338 (339)
Q Consensus 274 vl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~-~~e~p~~~~~~i~~fl~~ 338 (339)
+.++.+++| ..++......+.+. .|++++..+++ ||.- .+-+-++|..+|.+-|..
T Consensus 309 ~ivv~A~~D-------~Yipr~gv~~lQ~~-WPg~eVr~~eg-GHVsayl~k~dlfRR~I~d~L~R 365 (371)
T KOG1551|consen 309 IIVVQAKED-------AYIPRTGVRSLQEI-WPGCEVRYLEG-GHVSAYLFKQDLFRRAIVDGLDR 365 (371)
T ss_pred EEEEEecCC-------ccccccCcHHHHHh-CCCCEEEEeec-CceeeeehhchHHHHHHHHHHHh
Confidence 455556555 35566666666665 59999999995 9955 567889999999887764
No 175
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=97.52 E-value=0.00026 Score=64.31 Aligned_cols=122 Identities=9% Similarity=0.019 Sum_probs=81.2
Q ss_pred eeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChh---hH--HHHHH---HHHHhCCCceEEEEeeCCCCCCCCCC-
Q 045335 46 LAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRK---NW--GTFAR---RLARAYPTWQTCDVMVIPHQSRKGGL- 116 (339)
Q Consensus 46 ~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~---~~--~~~~~---~L~~~~~g~~vi~~D~~G~G~S~~~~- 116 (339)
....+-||++|+-..+-+++.+..|+++..+-++-... .+ ....+ .++.. ||-|+..|.||.|.|+..-
T Consensus 22 v~V~MRDGvrL~~dIy~Pa~~g~~Pvll~~~~~Py~k~~~~~~~~~~~~p~~~~~aa~--GYavV~qDvRG~~~SeG~~~ 99 (563)
T COG2936 22 VMVPMRDGVRLAADIYRPAGAGPLPVLLSRTRLPYRKRNGTFGPQLSALPQPAWFAAQ--GYAVVNQDVRGRGGSEGVFD 99 (563)
T ss_pred eeEEecCCeEEEEEEEccCCCCCCceeEEeeccccccccccCcchhhcccccceeecC--ceEEEEecccccccCCcccc
Confidence 34456699999998888876667788888883333332 11 11122 35555 8999999999999996431
Q ss_pred --CC--HHHHHHHHHHHHHHcC--CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 117 --TT--VASTALDVLKLVAQLR--ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 117 --~~--~~~~a~dl~~~l~~l~--~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
++ .+| .-|+++++.... .++|..+|.|++|...+.+|+..|. .++.++...+.
T Consensus 100 ~~~~~E~~D-g~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pP---aLkai~p~~~~ 158 (563)
T COG2936 100 PESSREAED-GYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPP---ALKAIAPTEGL 158 (563)
T ss_pred eeccccccc-hhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCc---hheeecccccc
Confidence 23 222 223444444332 2689999999999999999999887 45555555444
No 176
>KOG2183 consensus Prolylcarboxypeptidase (angiotensinase C) [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=97.48 E-value=0.003 Score=54.70 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=67.7
Q ss_pred CCeEEEEcCCCCChhhHH---HHHHHHHHhCCCceEEEEeeCCCCCCCC---C---------CCCHHHHHHHHHHHHHHc
Q 045335 69 PPTAVLLHGILGSRKNWG---TFARRLARAYPTWQTCDVMVIPHQSRKG---G---------LTTVASTALDVLKLVAQL 133 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~---~~~~~L~~~~~g~~vi~~D~~G~G~S~~---~---------~~~~~~~a~dl~~~l~~l 133 (339)
+-||+|--|.-++-+.|. .++-.+++++ +--++-++.|-||+|-+ . -.+.++..+|...++..+
T Consensus 80 ~gPIffYtGNEGdie~Fa~ntGFm~D~Ap~~-~AllVFaEHRyYGeS~PFG~~s~k~~~hlgyLtseQALADfA~ll~~l 158 (492)
T KOG2183|consen 80 EGPIFFYTGNEGDIEWFANNTGFMWDLAPEL-KALLVFAEHRYYGESLPFGSQSYKDARHLGYLTSEQALADFAELLTFL 158 (492)
T ss_pred CCceEEEeCCcccHHHHHhccchHHhhhHhh-CceEEEeehhccccCCCCcchhccChhhhccccHHHHHHHHHHHHHHH
Confidence 366999999988876663 3445566655 55788999999999832 1 135666667777777666
Q ss_pred CC------CceEEEEEchhHHHHHHHHHHccC
Q 045335 134 RI------TPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 134 ~~------~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+. .+|+.+|-|+||+++..+=.+||.
T Consensus 159 K~~~~a~~~pvIafGGSYGGMLaAWfRlKYPH 190 (492)
T KOG2183|consen 159 KRDLSAEASPVIAFGGSYGGMLAAWFRLKYPH 190 (492)
T ss_pred hhccccccCcEEEecCchhhHHHHHHHhcChh
Confidence 33 479999999999999999999997
No 177
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=97.48 E-value=0.0029 Score=61.66 Aligned_cols=96 Identities=21% Similarity=0.307 Sum_probs=71.7
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC---CCCCCCHHHHHHHHHHHHHHcCC-CceEEEEE
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR---KGGLTTVASTALDVLKLVAQLRI-TPRVLVGH 143 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S---~~~~~~~~~~a~dl~~~l~~l~~-~~~~lvGh 143 (339)
.+|+++|+|..-+....+.. |+.+. ..|-||.- ..|..++++.|.-...-|+.+.. +++.|+|.
T Consensus 2122 e~~~~Ffv~pIEG~tt~l~~----la~rl--------e~PaYglQ~T~~vP~dSies~A~~yirqirkvQP~GPYrl~GY 2189 (2376)
T KOG1202|consen 2122 EEPPLFFVHPIEGFTTALES----LASRL--------EIPAYGLQCTEAVPLDSIESLAAYYIRQIRKVQPEGPYRLAGY 2189 (2376)
T ss_pred cCCceEEEeccccchHHHHH----HHhhc--------CCcchhhhccccCCcchHHHHHHHHHHHHHhcCCCCCeeeecc
Confidence 58999999998887666554 44432 22445532 23457999999998888888865 68999999
Q ss_pred chhHHHHHHHHHHccCCCCCCceEEEEeccCCC
Q 045335 144 SFGGKVVLSMVEQAAKPLARPVRVWVLDATPGK 176 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~ 176 (339)
|+|++++..+|....+.. ....+++++++|..
T Consensus 2190 SyG~~l~f~ma~~Lqe~~-~~~~lillDGspty 2221 (2376)
T KOG1202|consen 2190 SYGACLAFEMASQLQEQQ-SPAPLILLDGSPTY 2221 (2376)
T ss_pred chhHHHHHHHHHHHHhhc-CCCcEEEecCchHH
Confidence 999999999998765543 45579999998754
No 178
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=97.31 E-value=0.001 Score=61.66 Aligned_cols=105 Identities=18% Similarity=0.072 Sum_probs=62.5
Q ss_pred CCCCeEEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeC----CCCCCCC----CCCCHHHHHH---HHHHHHHH
Q 045335 67 PDPPTAVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVI----PHQSRKG----GLTTVASTAL---DVLKLVAQ 132 (339)
Q Consensus 67 ~~~~~vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~----G~G~S~~----~~~~~~~~a~---dl~~~l~~ 132 (339)
...|.||+|||.+- +...+ ....|+....++-|+.+++| |+..+.. ....+.|+.. .+.+-++.
T Consensus 93 ~~~pv~v~ihGG~~~~g~~~~~--~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~~~~~n~g~~D~~~al~wv~~~i~~ 170 (493)
T cd00312 93 NSLPVMVWIHGGGFMFGSGSLY--PGDGLAREGDNVIVVSINYRLGVLGFLSTGDIELPGNYGLKDQRLALKWVQDNIAA 170 (493)
T ss_pred CCCCEEEEEcCCccccCCCCCC--ChHHHHhcCCCEEEEEecccccccccccCCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence 35689999999642 22222 23445544212789999988 3333321 1234555544 44444555
Q ss_pred cCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccC
Q 045335 133 LRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATP 174 (339)
Q Consensus 133 l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~ 174 (339)
.+. ++|.|+|+|.||..+..++.. |..-..+.++|+.+++.
T Consensus 171 fggd~~~v~~~G~SaG~~~~~~~~~~-~~~~~lf~~~i~~sg~~ 213 (493)
T cd00312 171 FGGDPDSVTIFGESAGGASVSLLLLS-PDSKGLFHRAISQSGSA 213 (493)
T ss_pred hCCCcceEEEEeecHHHHHhhhHhhC-cchhHHHHHHhhhcCCc
Confidence 554 579999999999999888765 32111355677766554
No 179
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=97.30 E-value=0.0079 Score=51.27 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=49.7
Q ss_pred hhhhhcCCCCceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCC-CeeEEEecCCCccccccChh---HHHHHHHHhhh
Q 045335 262 WKLVENLPQGVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGG-GVEMHVLEDAGHWVHADNPD---GLFRILTSSFE 337 (339)
Q Consensus 262 ~~~~~~~~~~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~-~~~~~~i~~~gH~~~~e~p~---~~~~~i~~fl~ 337 (339)
...+..+.. +|+++++|++| ..++......+...... ..+...+++++|......+. +..+.+.+|+.
T Consensus 224 ~~~~~~i~~-~P~l~~~G~~D-------~~vp~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~f~~ 295 (299)
T COG1073 224 FDDAEKISP-RPVLLVHGERD-------EVVPLRDAEDLYEAARERPKKLLFVPGGGHIDLYDNPPAVEQALDKLAEFLE 295 (299)
T ss_pred hhhHhhcCC-cceEEEecCCC-------cccchhhhHHHHhhhccCCceEEEecCCccccccCccHHHHHHHHHHHHHHH
Confidence 344444442 79999999887 57777777777776433 46888889999999875544 67788888876
Q ss_pred c
Q 045335 338 G 338 (339)
Q Consensus 338 ~ 338 (339)
+
T Consensus 296 ~ 296 (299)
T COG1073 296 R 296 (299)
T ss_pred H
Confidence 4
No 180
>KOG3101 consensus Esterase D [General function prediction only]
Probab=97.26 E-value=0.0003 Score=54.98 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=63.0
Q ss_pred CCeEEEEcCCCCChhhHH--HHHHHHHHhCCCceEEEEeeCCCC-----CCCC---------------C----CCCHHHH
Q 045335 69 PPTAVLLHGILGSRKNWG--TFARRLARAYPTWQTCDVMVIPHQ-----SRKG---------------G----LTTVAST 122 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~--~~~~~L~~~~~g~~vi~~D~~G~G-----~S~~---------------~----~~~~~~~ 122 (339)
-|+|.++.|+.++.+.|. .-.+..+.++ |+-|+.+|---.| .++. + .|.+.++
T Consensus 44 ~P~lf~LSGLTCT~~Nfi~Ksg~qq~As~h-gl~vV~PDTSPRG~~v~g~~eswDFG~GAGFYvnAt~epw~~~yrMYdY 122 (283)
T KOG3101|consen 44 CPVLFYLSGLTCTHENFIEKSGFQQQASKH-GLAVVAPDTSPRGVEVAGDDESWDFGQGAGFYVNATQEPWAKHYRMYDY 122 (283)
T ss_pred CceEEEecCCcccchhhHhhhhHHHhHhhc-CeEEECCCCCCCccccCCCcccccccCCceeEEecccchHhhhhhHHHH
Confidence 478899999999998773 3456667777 8999999954333 2211 0 1223332
Q ss_pred -HHHHHHHHHH----cCCCceEEEEEchhHHHHHHHHHHccCCCC
Q 045335 123 -ALDVLKLVAQ----LRITPRVLVGHSFGGKVVLSMVEQAAKPLA 162 (339)
Q Consensus 123 -a~dl~~~l~~----l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~ 162 (339)
.+.|-++++. +...++.+.||||||.=|+..+.++|....
T Consensus 123 v~kELp~~l~~~~~pld~~k~~IfGHSMGGhGAl~~~Lkn~~kyk 167 (283)
T KOG3101|consen 123 VVKELPQLLNSANVPLDPLKVGIFGHSMGGHGALTIYLKNPSKYK 167 (283)
T ss_pred HHHHHHHHhccccccccchhcceeccccCCCceEEEEEcCccccc
Confidence 4455555552 233568999999999999999999998443
No 181
>KOG3967 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0039 Score=48.95 Aligned_cols=105 Identities=19% Similarity=0.244 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCCCC-hhhHHH-H-----------HHHHHHhC-CCceEEEEeeCC---CCCCCCCC-----CCHHHHHHH
Q 045335 68 DPPTAVLLHGILGS-RKNWGT-F-----------ARRLARAY-PTWQTCDVMVIP---HQSRKGGL-----TTVASTALD 125 (339)
Q Consensus 68 ~~~~vv~lHG~~~~-~~~~~~-~-----------~~~L~~~~-~g~~vi~~D~~G---~G~S~~~~-----~~~~~~a~d 125 (339)
..+.+|+|||.|.- +.+|.. + ++...+.. .||.|+..+.-- +-.+.+.+ ..++...--
T Consensus 100 ~~kLlVLIHGSGvVrAGQWARrLIIN~~Ld~GTQiPyi~rAv~~Gygviv~N~N~~~kfye~k~np~kyirt~veh~~yv 179 (297)
T KOG3967|consen 100 PQKLLVLIHGSGVVRAGQWARRLIINEDLDSGTQIPYIKRAVAEGYGVIVLNPNRERKFYEKKRNPQKYIRTPVEHAKYV 179 (297)
T ss_pred ccceEEEEecCceEecchHhhhhhhccccccCCcChHHHHHHHcCCcEEEeCCchhhhhhhcccCcchhccchHHHHHHH
Confidence 35689999999864 356732 1 12222111 178888876431 22221111 223333333
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
...++.....+.+.+|+||+||...+.+..++|+. .+|.++.+-+++
T Consensus 180 w~~~v~pa~~~sv~vvahsyGG~~t~~l~~~f~~d-~~v~aialTDs~ 226 (297)
T KOG3967|consen 180 WKNIVLPAKAESVFVVAHSYGGSLTLDLVERFPDD-ESVFAIALTDSA 226 (297)
T ss_pred HHHHhcccCcceEEEEEeccCChhHHHHHHhcCCc-cceEEEEeeccc
Confidence 34444555667899999999999999999999985 478788888776
No 182
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.21 E-value=0.00096 Score=50.20 Aligned_cols=40 Identities=23% Similarity=0.253 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 120 ASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+...+.+.++++.....++++.|||+||.+|..++....+
T Consensus 48 ~~~~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l~~ 87 (140)
T PF01764_consen 48 DQILDALKELVEKYPDYSIVITGHSLGGALASLAAADLAS 87 (140)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccCccchhhccchHHHHHHHHHHhhhh
Confidence 3556667776666666789999999999999999986543
No 183
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=97.20 E-value=0.001 Score=47.04 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=49.5
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
.|+|++.++.| ..++....+++++. +++++++++++.||......-.-+.+.+.+||.
T Consensus 35 ~piL~l~~~~D-------p~TP~~~a~~~~~~-l~~s~lvt~~g~gHg~~~~~s~C~~~~v~~yl~ 92 (103)
T PF08386_consen 35 PPILVLGGTHD-------PVTPYEGARAMAAR-LPGSRLVTVDGAGHGVYAGGSPCVDKAVDDYLL 92 (103)
T ss_pred CCEEEEecCcC-------CCCcHHHHHHHHHH-CCCceEEEEeccCcceecCCChHHHHHHHHHHH
Confidence 89999999997 57888888888887 588999999999999987555666888888885
No 184
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.19 E-value=0.0016 Score=49.85 Aligned_cols=53 Identities=28% Similarity=0.241 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCC-CCCCceEEEEecc
Q 045335 121 STALDVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKP-LARPVRVWVLDAT 173 (339)
Q Consensus 121 ~~a~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~-~~~v~~lv~l~~~ 173 (339)
.+.+.+...++.. ...+++++|||+||.+|..++...... ...+..++.++++
T Consensus 9 ~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p 66 (153)
T cd00741 9 SLANLVLPLLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPP 66 (153)
T ss_pred HHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCC
Confidence 3444444444443 557899999999999999999887652 1134566666654
No 185
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=97.09 E-value=0.0097 Score=54.18 Aligned_cols=116 Identities=12% Similarity=0.005 Sum_probs=76.0
Q ss_pred CCcceeEEeeeCeeEEEeeccC--CCCCCCCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCC---
Q 045335 42 PSGVLAYDLIQGTLVRWSSMMD--KSIPDPPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRKG--- 114 (339)
Q Consensus 42 ~~~~~~~~~~~g~~l~~~~~g~--~~~~~~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~--- 114 (339)
...+......||++|.|...+. ..+ ..|++|+--|...-+ -.|........++ |.-.+..++||=|+=.+
T Consensus 393 ~veQ~~atSkDGT~IPYFiv~K~~~~d-~~pTll~aYGGF~vsltP~fs~~~~~WLer--Gg~~v~ANIRGGGEfGp~WH 469 (648)
T COG1505 393 EVEQFFATSKDGTRIPYFIVRKGAKKD-ENPTLLYAYGGFNISLTPRFSGSRKLWLER--GGVFVLANIRGGGEFGPEWH 469 (648)
T ss_pred eEEEEEEEcCCCccccEEEEecCCcCC-CCceEEEeccccccccCCccchhhHHHHhc--CCeEEEEecccCCccCHHHH
Confidence 3344556677999999998861 222 467776655543322 3455555555555 55777789999774421
Q ss_pred -------CCCCHHHHHHHHHHHHHHcCC---CceEEEEEchhHHHHHHHHHHccCCC
Q 045335 115 -------GLTTVASTALDVLKLVAQLRI---TPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 115 -------~~~~~~~~a~dl~~~l~~l~~---~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
....++|+++-+.+++++ ++ +++.+-|-|-||.+.-....++||.+
T Consensus 470 ~Aa~k~nrq~vfdDf~AVaedLi~r-gitspe~lgi~GgSNGGLLvg~alTQrPelf 525 (648)
T COG1505 470 QAGMKENKQNVFDDFIAVAEDLIKR-GITSPEKLGIQGGSNGGLLVGAALTQRPELF 525 (648)
T ss_pred HHHhhhcchhhhHHHHHHHHHHHHh-CCCCHHHhhhccCCCCceEEEeeeccChhhh
Confidence 224556666655555543 33 46789999999999998889999966
No 186
>PLN02209 serine carboxypeptidase
Probab=97.07 E-value=0.0078 Score=54.27 Aligned_cols=111 Identities=19% Similarity=0.196 Sum_probs=69.9
Q ss_pred eeEEeee---CeeEEEeeccCCCCC-CCCeEEEEcCCCCChhhHHHHH---HH-------------HHH-hC---CCceE
Q 045335 46 LAYDLIQ---GTLVRWSSMMDKSIP-DPPTAVLLHGILGSRKNWGTFA---RR-------------LAR-AY---PTWQT 101 (339)
Q Consensus 46 ~~~~~~~---g~~l~~~~~g~~~~~-~~~~vv~lHG~~~~~~~~~~~~---~~-------------L~~-~~---~g~~v 101 (339)
..|..++ +..++|.......++ ..|.|+++.|.++++..+..+. +. |.. .+ +-.++
T Consensus 41 sGy~~v~~~~~~~lf~~f~es~~~~~~~Pl~lWlnGGPG~SS~~g~f~e~GP~~~~~~~~~~~~~~l~~n~~sW~~~anl 120 (437)
T PLN02209 41 TGYIGIGEEENVQFFYYFIKSDKNPQEDPLIIWLNGGPGCSCLSGLFFENGPLALKNKVYNGSVPSLVSTTYSWTKTANI 120 (437)
T ss_pred EEEEEecCCCCeEEEEEEEecCCCCCCCCEEEEECCCCcHHHhhhHHHhcCCceeccCCCCCCcccceeCCCchhhcCcE
Confidence 3455553 466777776654433 5789999999999887664332 11 100 00 02489
Q ss_pred EEEe-eCCCCCCCCC---C-CCHHHHHHHHHHHHHHc-------CCCceEEEEEchhHHHHHHHHHH
Q 045335 102 CDVM-VIPHQSRKGG---L-TTVASTALDVLKLVAQL-------RITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 102 i~~D-~~G~G~S~~~---~-~~~~~~a~dl~~~l~~l-------~~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+.+| ..|.|.|... . .+-++.++++.+++... ...+++|.|.|+||..+-.+|..
T Consensus 121 lfiDqPvGtGfSy~~~~~~~~~~~~~a~~~~~fl~~f~~~~p~~~~~~~yi~GESYaG~yvP~~a~~ 187 (437)
T PLN02209 121 IFLDQPVGSGFSYSKTPIERTSDTSEVKKIHEFLQKWLIKHPQFLSNPFYVVGDSYSGMIVPALVHE 187 (437)
T ss_pred EEecCCCCCCccCCCCCCCccCCHHHHHHHHHHHHHHHHhCccccCCCEEEEecCcCceehHHHHHH
Confidence 9999 5588988422 1 23334556666666542 33589999999999877777653
No 187
>KOG2369 consensus Lecithin:cholesterol acyltransferase (LCAT)/Acyl-ceramide synthase [Lipid transport and metabolism]
Probab=97.04 E-value=0.0012 Score=58.32 Aligned_cols=75 Identities=13% Similarity=0.108 Sum_probs=51.1
Q ss_pred hhHHHHHHHHHHhCCCce------EEEEeeCC-CCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 83 KNWGTFARRLARAYPTWQ------TCDVMVIP-HQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 83 ~~~~~~~~~L~~~~~g~~------vi~~D~~G-~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
..|..+++.|..- ||+ -..+|+|= +-.+...+..+..+..-|+...+.-+.+|++||+||||+.+.+.+..
T Consensus 124 ~~w~~~i~~lv~~--GYe~~~~l~ga~YDwRls~~~~e~rd~yl~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~ 201 (473)
T KOG2369|consen 124 WYWHELIENLVGI--GYERGKTLFGAPYDWRLSYHNSEERDQYLSKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLK 201 (473)
T ss_pred HHHHHHHHHHHhh--CcccCceeeccccchhhccCChhHHHHHHHHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHh
Confidence 4788899998876 555 33467661 21122223344455555555555556699999999999999999998
Q ss_pred HccC
Q 045335 156 QAAK 159 (339)
Q Consensus 156 ~~p~ 159 (339)
.+++
T Consensus 202 w~~~ 205 (473)
T KOG2369|consen 202 WVEA 205 (473)
T ss_pred cccc
Confidence 8877
No 188
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=96.91 E-value=0.018 Score=50.45 Aligned_cols=55 Identities=7% Similarity=0.026 Sum_probs=34.9
Q ss_pred eEEEeeccCCCCCCCCeEEEEcCCCCChh--hHHHHHHHHHHhCCCceEEEEeeCCCC
Q 045335 55 LVRWSSMMDKSIPDPPTAVLLHGILGSRK--NWGTFARRLARAYPTWQTCDVMVIPHQ 110 (339)
Q Consensus 55 ~l~~~~~g~~~~~~~~~vv~lHG~~~~~~--~~~~~~~~L~~~~~g~~vi~~D~~G~G 110 (339)
.+.|+..-......+--|+++.|+|++.. ......+.+++.| ..-|+.++.-|+|
T Consensus 21 KLEyri~ydd~Ke~kaIvfiI~GfG~dan~~~~d~~r~~iA~~f-nvv~I~V~YHCf~ 77 (403)
T PF11144_consen 21 KLEYRISYDDEKEIKAIVFIIPGFGADANSNYLDFMREYIAKKF-NVVVISVNYHCFC 77 (403)
T ss_pred eeeEEeecCCCCCceEEEEEeCCcCCCcchHHHHHHHHHHHHhC-CEEEEEeeeehee
Confidence 34454433222223445778999999875 3467778899998 5555556666666
No 189
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=96.91 E-value=0.0021 Score=45.90 Aligned_cols=46 Identities=22% Similarity=0.172 Sum_probs=29.2
Q ss_pred CcceeEEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHH
Q 045335 43 SGVLAYDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFA 89 (339)
Q Consensus 43 ~~~~~~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~ 89 (339)
..+-....++|..|++...-+ ..++..||||+|||++|-..|.+++
T Consensus 67 ~~phf~t~I~g~~iHFih~rs-~~~~aiPLll~HGWPgSf~Ef~~vI 112 (112)
T PF06441_consen 67 SFPHFKTEIDGLDIHFIHVRS-KRPNAIPLLLLHGWPGSFLEFLKVI 112 (112)
T ss_dssp TS-EEEEEETTEEEEEEEE---S-TT-EEEEEE--SS--GGGGHHHH
T ss_pred cCCCeeEEEeeEEEEEEEeeC-CCCCCeEEEEECCCCccHHhHHhhC
Confidence 355566788999999877765 4457789999999999998887654
No 190
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=96.89 E-value=0.0018 Score=57.59 Aligned_cols=118 Identities=14% Similarity=0.008 Sum_probs=71.1
Q ss_pred EEEeeccCC-CCCCCCeEEEEcCCC---CChhhHHHHHHHHHHhCCCceEEEEeeC-C-CC---CC-------CCCCCCH
Q 045335 56 VRWSSMMDK-SIPDPPTAVLLHGIL---GSRKNWGTFARRLARAYPTWQTCDVMVI-P-HQ---SR-------KGGLTTV 119 (339)
Q Consensus 56 l~~~~~g~~-~~~~~~~vv~lHG~~---~~~~~~~~~~~~L~~~~~g~~vi~~D~~-G-~G---~S-------~~~~~~~ 119 (339)
|+..++-+. .....|.+|+|||.+ ++...-..--..|+++. ++-|+++++| | +| .| ......+
T Consensus 80 L~LNIwaP~~~a~~~PVmV~IHGG~y~~Gs~s~~~ydgs~La~~g-~vVvVSvNYRLG~lGfL~~~~~~~~~~~~~n~Gl 158 (491)
T COG2272 80 LYLNIWAPEVPAEKLPVMVYIHGGGYIMGSGSEPLYDGSALAARG-DVVVVSVNYRLGALGFLDLSSLDTEDAFASNLGL 158 (491)
T ss_pred eeEEeeccCCCCCCCcEEEEEeccccccCCCcccccChHHHHhcC-CEEEEEeCcccccceeeehhhccccccccccccH
Confidence 444455444 333469999999965 23322122245788873 3667777665 2 12 11 1112455
Q ss_pred HHHH---HHHHHHHHHcCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 120 ASTA---LDVLKLVAQLRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 120 ~~~a---~dl~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
.|+. +++.+-|++.|- ++|.|+|+|.||+.++.+.+- |..-.-..++|++++...
T Consensus 159 ~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~ 218 (491)
T COG2272 159 LDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAAS 218 (491)
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCC
Confidence 5554 556667777766 469999999999998888653 653323456677766644
No 191
>COG0627 Predicted esterase [General function prediction only]
Probab=96.89 E-value=0.0033 Score=53.85 Aligned_cols=93 Identities=18% Similarity=0.187 Sum_probs=56.6
Q ss_pred CCeEEEEcCCCCChhhHHH--HHHHHHHhCCCceEEEEee--------------CCCCCC-----CCC-----CCCHHHH
Q 045335 69 PPTAVLLHGILGSRKNWGT--FARRLARAYPTWQTCDVMV--------------IPHQSR-----KGG-----LTTVAST 122 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~--~~~~L~~~~~g~~vi~~D~--------------~G~G~S-----~~~-----~~~~~~~ 122 (339)
=|.++++||..++...|.. =++..++.. |+-++++|- .|-+.| ..+ .+.++++
T Consensus 54 ipV~~~l~G~t~~~~~~~~~~g~~~~a~~~-g~~~~~p~t~~~~~~~~~~vv~p~G~~~sfY~d~~~~~~~~~~~q~~tf 132 (316)
T COG0627 54 IPVLYLLSGLTCNEPNVYLLDGLRRQADES-GWAVVTPDTSPRGAGVNISVVMPLGGGASFYSDWTQPPWASGPYQWETF 132 (316)
T ss_pred CCEEEEeCCCCCCCCceEeccchhhhhhhc-CeEEecCCCCcccCCCCccccccCCCccceecccccCccccCccchhHH
Confidence 4677889999888644422 234455544 666666532 243333 011 2455544
Q ss_pred -HHHHHHHHH-HcCC----CceEEEEEchhHHHHHHHHHHccCCCC
Q 045335 123 -ALDVLKLVA-QLRI----TPRVLVGHSFGGKVVLSMVEQAAKPLA 162 (339)
Q Consensus 123 -a~dl~~~l~-~l~~----~~~~lvGhS~Gg~ia~~~a~~~p~~~~ 162 (339)
.+.+-..++ +... ++-.++||||||.=|+.+|+++|+++.
T Consensus 133 l~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~ 178 (316)
T COG0627 133 LTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFK 178 (316)
T ss_pred HHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhc
Confidence 344553443 3331 268999999999999999999999543
No 192
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=96.71 E-value=0.072 Score=41.56 Aligned_cols=104 Identities=21% Similarity=0.210 Sum_probs=63.8
Q ss_pred CCCCeEEEEcCCCCChhhH----H----HHHHHHHH----hCCCceEEEEeeCCCCCC------CCCCCCHHHHHHHHHH
Q 045335 67 PDPPTAVLLHGILGSRKNW----G----TFARRLAR----AYPTWQTCDVMVIPHQSR------KGGLTTVASTALDVLK 128 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~----~----~~~~~L~~----~~~g~~vi~~D~~G~G~S------~~~~~~~~~~a~dl~~ 128 (339)
..+...++++|.+.+.... . .+...+.. .-++-++-++-|.||-.= .....--+.-+.+|..
T Consensus 17 ~A~~Vav~VPG~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~vAvV~WlgYdaP~~~~~~a~~~~~A~~ga~~L~~ 96 (177)
T PF06259_consen 17 TADHVAVLVPGTGTTLDSFLGGMDDEARALRAAAARAARAAGPGGSVAVVAWLGYDAPAGGLPDAASPGYARAGAPRLAR 96 (177)
T ss_pred CcCeeEEEcCCCCCCcccccchhHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcCCCCCCCccccccCchHHHHHHHHHHH
Confidence 4567889999998775321 1 11111111 111236666666666421 1112234566777888
Q ss_pred HHHHcCC-----CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 129 LVAQLRI-----TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 129 ~l~~l~~-----~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
|++.|.. ..+.++|||+|+.++-..+...+. .+..++++.++
T Consensus 97 f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~---~vddvv~~GSP 143 (177)
T PF06259_consen 97 FLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGL---RVDDVVLVGSP 143 (177)
T ss_pred HHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCC---CcccEEEECCC
Confidence 8877632 367999999999999988877454 66688777654
No 193
>KOG2182 consensus Hydrolytic enzymes of the alpha/beta hydrolase fold [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=96.68 E-value=0.014 Score=52.02 Aligned_cols=93 Identities=11% Similarity=0.125 Sum_probs=72.5
Q ss_pred CCCCeEEEEcCCCCChhhH----HHHHHHHHHhCCCceEEEEeeCCCCCCCCC-C--------CCHHHHHHHHHHHHHHc
Q 045335 67 PDPPTAVLLHGILGSRKNW----GTFARRLARAYPTWQTCDVMVIPHQSRKGG-L--------TTVASTALDVLKLVAQL 133 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~----~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~--------~~~~~~a~dl~~~l~~l 133 (339)
+++|..|+|-|=+.-...| ....-.++++| |-.|+..+.|=||.|.+. + .|......|+.++|+++
T Consensus 84 ~~gPiFLmIGGEgp~~~~wv~~~~~~~~~~Akkf-gA~v~~lEHRFYG~S~P~~~~st~nlk~LSs~QALaDla~fI~~~ 162 (514)
T KOG2182|consen 84 PGGPIFLMIGGEGPESDKWVGNENLTWLQWAKKF-GATVFQLEHRFYGQSSPIGDLSTSNLKYLSSLQALADLAEFIKAM 162 (514)
T ss_pred CCCceEEEEcCCCCCCCCccccCcchHHHHHHHh-CCeeEEeeeeccccCCCCCCCcccchhhhhHHHHHHHHHHHHHHH
Confidence 4678888888766555455 22345677777 789999999999988332 1 47788889999999887
Q ss_pred CC-------CceEEEEEchhHHHHHHHHHHccCC
Q 045335 134 RI-------TPRVLVGHSFGGKVVLSMVEQAAKP 160 (339)
Q Consensus 134 ~~-------~~~~lvGhS~Gg~ia~~~a~~~p~~ 160 (339)
+. .|.+..|-|+-|.++..+=..||++
T Consensus 163 n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel 196 (514)
T KOG2182|consen 163 NAKFNFSDDSKWITFGGSYSGSLSAWFREKYPEL 196 (514)
T ss_pred HhhcCCCCCCCeEEECCCchhHHHHHHHHhCchh
Confidence 44 2789999999999999999999994
No 194
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=96.65 E-value=0.017 Score=50.05 Aligned_cols=87 Identities=21% Similarity=0.144 Sum_probs=65.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHc----CCCceEEEEE
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQL----RITPRVLVGH 143 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l----~~~~~~lvGh 143 (339)
....-||+.|=|+-...=+.+...|.+. |+.|+.+|-.-|=.| ..+.+..++|+..+++.. +.+++.|+|.
T Consensus 259 sd~~av~~SGDGGWr~lDk~v~~~l~~~--gvpVvGvdsLRYfW~---~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGy 333 (456)
T COG3946 259 SDTVAVFYSGDGGWRDLDKEVAEALQKQ--GVPVVGVDSLRYFWS---ERTPEQIAADLSRLIRFYARRWGAKRVLLIGY 333 (456)
T ss_pred cceEEEEEecCCchhhhhHHHHHHHHHC--CCceeeeehhhhhhc---cCCHHHHHHHHHHHHHHHHHhhCcceEEEEee
Confidence 4555678877777666657778888888 999999997655555 357788888888888765 5578999999
Q ss_pred chhHHHHHHHHHHccC
Q 045335 144 SFGGKVVLSMVEQAAK 159 (339)
Q Consensus 144 S~Gg~ia~~~a~~~p~ 159 (339)
|+|+-+.-..-.+.|.
T Consensus 334 SfGADvlP~~~n~L~~ 349 (456)
T COG3946 334 SFGADVLPFAYNRLPP 349 (456)
T ss_pred cccchhhHHHHHhCCH
Confidence 9999887655554443
No 195
>KOG4372 consensus Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.63 E-value=0.0039 Score=54.09 Aligned_cols=86 Identities=21% Similarity=0.229 Sum_probs=57.0
Q ss_pred CCCeEEEEcCCCC-ChhhHHHHHHHHHHhCCCceEEEEeeCCC-CCCCCC-CCCHHHHHHHHHHHHHHcCCCceEEEEEc
Q 045335 68 DPPTAVLLHGILG-SRKNWGTFARRLARAYPTWQTCDVMVIPH-QSRKGG-LTTVASTALDVLKLVAQLRITPRVLVGHS 144 (339)
Q Consensus 68 ~~~~vv~lHG~~~-~~~~~~~~~~~L~~~~~g~~vi~~D~~G~-G~S~~~-~~~~~~~a~dl~~~l~~l~~~~~~lvGhS 144 (339)
.+-.||+.||+.+ +...|...+......+++..++.....|. +.+... ..=-+..++++.+.+....++++.+||||
T Consensus 79 ~~HLvVlthGi~~~~~~~~~~~~~~~~kk~p~~~iv~~g~~~~~~~T~~Gv~~lG~Rla~~~~e~~~~~si~kISfvghS 158 (405)
T KOG4372|consen 79 PKHLVVLTHGLHGADMEYWKEKIEQMTKKMPDKLIVVRGKMNNMCQTFDGVDVLGERLAEEVKETLYDYSIEKISFVGHS 158 (405)
T ss_pred CceEEEeccccccccHHHHHHHHHhhhcCCCcceEeeeccccchhhccccceeeecccHHHHhhhhhccccceeeeeeee
Confidence 4568999999988 67899988888888876653333333321 222221 12223445556666666668899999999
Q ss_pred hhHHHHHHH
Q 045335 145 FGGKVVLSM 153 (339)
Q Consensus 145 ~Gg~ia~~~ 153 (339)
+||.++-..
T Consensus 159 LGGLvar~A 167 (405)
T KOG4372|consen 159 LGGLVARYA 167 (405)
T ss_pred cCCeeeeEE
Confidence 999886543
No 196
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=96.59 E-value=0.015 Score=52.04 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=67.9
Q ss_pred eEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHH----HHHh----C---C-----CceEEEEe-eCCCCCCCC--C
Q 045335 55 LVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARR----LARA----Y---P-----TWQTCDVM-VIPHQSRKG--G 115 (339)
Q Consensus 55 ~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~----L~~~----~---~-----g~~vi~~D-~~G~G~S~~--~ 115 (339)
...|...+++.+.++|.++++.|.++++..|..+.+. +... + | --.++-+| .-|-|.|.. .
T Consensus 87 ~ffy~fe~~ndp~~rPvi~wlNGGPGcSS~~g~l~elGP~rI~~~~~P~~~~NP~SW~~~adLvFiDqPvGTGfS~a~~~ 166 (498)
T COG2939 87 FFFYTFESPNDPANRPVIFWLNGGPGCSSVTGLLGELGPKRIQSGTSPSYPDNPGSWLDFADLVFIDQPVGTGFSRALGD 166 (498)
T ss_pred EEEEEecCCCCCCCCceEEEecCCCChHhhhhhhhhcCCeeeeCCCCCCCCCCccccccCCceEEEecCcccCccccccc
Confidence 4566666655555789999999999999888765211 0000 0 0 02788899 558888842 1
Q ss_pred --CCCHHHHHHHHHHHHH-------HcCC--CceEEEEEchhHHHHHHHHHHccC
Q 045335 116 --LTTVASTALDVLKLVA-------QLRI--TPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 116 --~~~~~~~a~dl~~~l~-------~l~~--~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
..+.....+|+..+.+ +... .+.+|+|.|+||.-+..+|...-+
T Consensus 167 e~~~d~~~~~~D~~~~~~~f~~~fp~~~r~~~~~~L~GESYgg~yip~~A~~L~~ 221 (498)
T COG2939 167 EKKKDFEGAGKDVYSFLRLFFDKFPHYARLLSPKFLAGESYGGHYIPVFAHELLE 221 (498)
T ss_pred ccccchhccchhHHHHHHHHHHHHHHHhhhcCceeEeeccccchhhHHHHHHHHH
Confidence 2344445555544443 3332 489999999999999888865433
No 197
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.57 E-value=0.036 Score=45.71 Aligned_cols=37 Identities=22% Similarity=0.316 Sum_probs=29.4
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+-++-.++|||+||.+++.....+|+.+ .+..+++++
T Consensus 135 ~~~~~~i~GhSlGGLfvl~aLL~~p~~F---~~y~~~SPS 171 (264)
T COG2819 135 NSERTAIIGHSLGGLFVLFALLTYPDCF---GRYGLISPS 171 (264)
T ss_pred CcccceeeeecchhHHHHHHHhcCcchh---ceeeeecch
Confidence 3356899999999999999999999944 466666543
No 198
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=96.56 E-value=0.0073 Score=55.30 Aligned_cols=70 Identities=16% Similarity=0.128 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEEeeCCCCC----CCCCCCCHHHHHHHHHHHHHHc----CCCceEEEEEchhHHHHHHHH
Q 045335 83 KNWGTFARRLARAYPTWQTCDVMVIPHQS----RKGGLTTVASTALDVLKLVAQL----RITPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 83 ~~~~~~~~~L~~~~~g~~vi~~D~~G~G~----S~~~~~~~~~~a~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a 154 (339)
..|..+++.|++. ||. --++.|..- +......-+.+-..|..+++.. +.+|++||||||||.+++.+.
T Consensus 156 ~vw~kLIe~L~~i--GY~--~~nL~gAPYDWRls~~~le~rd~YF~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL 231 (642)
T PLN02517 156 FVWAVLIANLARI--GYE--EKNMYMAAYDWRLSFQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFM 231 (642)
T ss_pred eeHHHHHHHHHHc--CCC--CCceeecccccccCccchhhhhHHHHHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHH
Confidence 3779999999986 665 344443331 2111122344444455555432 457999999999999999987
Q ss_pred HH
Q 045335 155 EQ 156 (339)
Q Consensus 155 ~~ 156 (339)
..
T Consensus 232 ~w 233 (642)
T PLN02517 232 KW 233 (642)
T ss_pred Hh
Confidence 63
No 199
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=96.53 E-value=0.0074 Score=49.69 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.0
Q ss_pred HHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 129 LVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 129 ~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
.++.....++++.|||+||.+|..++....
T Consensus 121 ~~~~~p~~~i~vtGHSLGGaiA~l~a~~l~ 150 (229)
T cd00519 121 ALKQYPDYKIIVTGHSLGGALASLLALDLR 150 (229)
T ss_pred HHhhCCCceEEEEccCHHHHHHHHHHHHHH
Confidence 333334467999999999999999988654
No 200
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.41 E-value=0.011 Score=48.27 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCC-CCCCceEEEEecc
Q 045335 121 STALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKP-LARPVRVWVLDAT 173 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~-~~~v~~lv~l~~~ 173 (339)
.-++-+..+++..+ +++.+.|||.||.+|+..|+..++. ..+|.++...+++
T Consensus 70 ~A~~yl~~~~~~~~-~~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgP 122 (224)
T PF11187_consen 70 SALAYLKKIAKKYP-GKIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGP 122 (224)
T ss_pred HHHHHHHHHHHhCC-CCEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCC
Confidence 33444555555555 4699999999999999999885432 2367788888775
No 201
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=96.38 E-value=0.063 Score=50.24 Aligned_cols=104 Identities=16% Similarity=-0.008 Sum_probs=58.1
Q ss_pred CCeEEEEcCCCC---Chh-hHHHHHHHHHHhCCCceEEEEeeC----CCCCC---C-C-CCCCHHHHHHHH---HHHHHH
Q 045335 69 PPTAVLLHGILG---SRK-NWGTFARRLARAYPTWQTCDVMVI----PHQSR---K-G-GLTTVASTALDV---LKLVAQ 132 (339)
Q Consensus 69 ~~~vv~lHG~~~---~~~-~~~~~~~~L~~~~~g~~vi~~D~~----G~G~S---~-~-~~~~~~~~a~dl---~~~l~~ 132 (339)
-|.+|+|||.+- +.. ....-...+++. ++=|+.+.+| ||-.+ . . ..+.+.|+...| .+-|.+
T Consensus 125 lPV~v~ihGG~f~~G~~~~~~~~~~~~~~~~--~vivVt~nYRlg~~Gfl~~~~~~~~~gN~Gl~Dq~~AL~WV~~nI~~ 202 (535)
T PF00135_consen 125 LPVMVWIHGGGFMFGSGSFPPYDGASLAASK--DVIVVTINYRLGAFGFLSLGDLDAPSGNYGLLDQRLALKWVQDNIAA 202 (535)
T ss_dssp EEEEEEE--STTTSSCTTSGGGHTHHHHHHH--TSEEEEE----HHHHH-BSSSTTSHBSTHHHHHHHHHHHHHHHHGGG
T ss_pred cceEEEeecccccCCCcccccccccccccCC--CEEEEEecccccccccccccccccCchhhhhhhhHHHHHHHHhhhhh
Confidence 488999999653 221 222222334444 5678888877 33222 1 2 355666665544 444455
Q ss_pred cCC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCC
Q 045335 133 LRI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPG 175 (339)
Q Consensus 133 l~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~ 175 (339)
.|. ++|.|.|||.||..+..+... |..-..+.+.|+.++++.
T Consensus 203 FGGDp~~VTl~G~SAGa~sv~~~l~s-p~~~~LF~raI~~SGs~~ 246 (535)
T PF00135_consen 203 FGGDPDNVTLFGQSAGAASVSLLLLS-PSSKGLFHRAILQSGSAL 246 (535)
T ss_dssp GTEEEEEEEEEEETHHHHHHHHHHHG-GGGTTSBSEEEEES--TT
T ss_pred cccCCcceeeeeecccccccceeeec-cccccccccccccccccc
Confidence 554 469999999999998888776 442225668888877543
No 202
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=96.04 E-value=0.13 Score=42.12 Aligned_cols=90 Identities=17% Similarity=0.142 Sum_probs=54.4
Q ss_pred eEEEEcCCCCC---hhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH--------HHHHcCC----
Q 045335 71 TAVLLHGILGS---RKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK--------LVAQLRI---- 135 (339)
Q Consensus 71 ~vv~lHG~~~~---~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~--------~l~~l~~---- 135 (339)
.|-|+-|..-. .-.|+.+++.|+++ ||.|++.-+. ..++-...|+.+.. +.+.-+.
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~~--Gy~ViAtPy~-------~tfDH~~~A~~~~~~f~~~~~~L~~~~~~~~~~ 89 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLADR--GYAVIATPYV-------VTFDHQAIAREVWERFERCLRALQKRGGLDPAY 89 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHhC--CcEEEEEecC-------CCCcHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 45556554322 25789999999997 8999997653 12222222222222 2222122
Q ss_pred CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
-+++-||||+|+.+-+.+...++. ...+.++++-
T Consensus 90 lP~~~vGHSlGcklhlLi~s~~~~---~r~gniliSF 123 (250)
T PF07082_consen 90 LPVYGVGHSLGCKLHLLIGSLFDV---ERAGNILISF 123 (250)
T ss_pred CCeeeeecccchHHHHHHhhhccC---cccceEEEec
Confidence 256789999999999998887754 3345555543
No 203
>PLN02162 triacylglycerol lipase
Probab=96.01 E-value=0.022 Score=50.83 Aligned_cols=37 Identities=19% Similarity=0.222 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 119 VASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
..++.+.+.+++.+....++++.|||+||++|..+|.
T Consensus 261 y~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 261 YYTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 4455666777777666668999999999999999865
No 204
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=95.81 E-value=0.059 Score=45.16 Aligned_cols=111 Identities=21% Similarity=0.136 Sum_probs=58.5
Q ss_pred EEEeeccCCCCCCCCeEEEEcCCC--CChhhHHHHHHHHHHhC-CCceEEEEeeCCCCCCC---CCCC----CHHHHHHH
Q 045335 56 VRWSSMMDKSIPDPPTAVLLHGIL--GSRKNWGTFARRLARAY-PTWQTCDVMVIPHQSRK---GGLT----TVASTALD 125 (339)
Q Consensus 56 l~~~~~g~~~~~~~~~vv~lHG~~--~~~~~~~~~~~~L~~~~-~g~~vi~~D~~G~G~S~---~~~~----~~~~~a~d 125 (339)
+.|...|......-|.+++.||-. .+...|..+...+++.- +.--++.+|.- ... ..-+ .+..++++
T Consensus 85 vv~lppgy~~~~k~pvl~~~DG~~~~~~g~i~~~~dsli~~g~i~pai~vgid~~---d~~~R~~~~~~n~~~~~~L~~e 161 (299)
T COG2382 85 VVYLPPGYNPLEKYPVLYLQDGQDWFRSGRIPRILDSLIAAGEIPPAILVGIDYI---DVKKRREELHCNEAYWRFLAQE 161 (299)
T ss_pred EEEeCCCCCccccccEEEEeccHHHHhcCChHHHHHHHHHcCCCCCceEEecCCC---CHHHHHHHhcccHHHHHHHHHH
Confidence 444444433323457889999843 33344544433333321 11233333322 110 0112 33444445
Q ss_pred HHHHHHHc-C----CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 126 VLKLVAQL-R----ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 126 l~~~l~~l-~----~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
|.=++++. . .+.-+|.|-|+||.+++..+.+||+.+. .++..++
T Consensus 162 LlP~v~~~yp~~~~a~~r~L~G~SlGG~vsL~agl~~Pe~FG---~V~s~Sp 210 (299)
T COG2382 162 LLPYVEERYPTSADADGRVLAGDSLGGLVSLYAGLRHPERFG---HVLSQSG 210 (299)
T ss_pred hhhhhhccCcccccCCCcEEeccccccHHHHHHHhcCchhhc---eeeccCC
Confidence 55455442 1 1346899999999999999999999653 4444433
No 205
>PLN02571 triacylglycerol lipase
Probab=95.78 E-value=0.017 Score=51.05 Aligned_cols=37 Identities=19% Similarity=0.249 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHcCCC--ceEEEEEchhHHHHHHHHHH
Q 045335 120 ASTALDVLKLVAQLRIT--PRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~~--~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+++.++|..+++..... ++++.|||+||.+|...|..
T Consensus 208 ~qvl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 208 DQVLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 45566777777765433 68999999999999998875
No 206
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=95.77 E-value=0.021 Score=36.07 Aligned_cols=38 Identities=24% Similarity=0.461 Sum_probs=21.1
Q ss_pred EEeeeCeeEEEeeccC-C----CCCCCCeEEEEcCCCCChhhH
Q 045335 48 YDLIQGTLVRWSSMMD-K----SIPDPPTAVLLHGILGSRKNW 85 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~-~----~~~~~~~vv~lHG~~~~~~~~ 85 (339)
..+-||-.|..+.... . ..+.+|+|++.||+.+++..|
T Consensus 17 V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~w 59 (63)
T PF04083_consen 17 VTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDW 59 (63)
T ss_dssp EE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGG
T ss_pred EEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHH
Confidence 4456787777554433 2 344678999999999999988
No 207
>KOG2029 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.03 Score=50.94 Aligned_cols=82 Identities=16% Similarity=0.259 Sum_probs=49.7
Q ss_pred HHHhCCCceEEEEeeCCC-------CCCCCCCCCHHHHHHHHHHHHHHcCC---CceEEEEEchhHHHHHHHHHH-----
Q 045335 92 LARAYPTWQTCDVMVIPH-------QSRKGGLTTVASTALDVLKLVAQLRI---TPRVLVGHSFGGKVVLSMVEQ----- 156 (339)
Q Consensus 92 L~~~~~g~~vi~~D~~G~-------G~S~~~~~~~~~~a~dl~~~l~~l~~---~~~~lvGhS~Gg~ia~~~a~~----- 156 (339)
|..+||+.|+|.++++-. -.+..+..++..-+..+.+.+.+.++ ++++.|||||||.++=.+...
T Consensus 472 Lp~D~p~~Rii~l~Y~Tsit~w~~~~p~e~~r~sl~~Rs~~lleql~~~~VG~~RPivwI~HSmGGLl~K~lLlda~~S~ 551 (697)
T KOG2029|consen 472 LPDDYPKSRIIGLEYTTSITDWRARCPAEAHRRSLAARSNELLEQLQAAGVGDDRPIVWIGHSMGGLLAKKLLLDAYCSS 551 (697)
T ss_pred ccccCccceEEEeecccchhhhcccCcccchhhHHHHHHHHHHHHHHHhccCCCCceEEEecccchHHHHHHHHHHhhcC
Confidence 666777888888877642 11112223444444445555555444 478999999999988766542
Q ss_pred ccC---CCCCCceEEEEecc
Q 045335 157 AAK---PLARPVRVWVLDAT 173 (339)
Q Consensus 157 ~p~---~~~~v~~lv~l~~~ 173 (339)
.|+ ......+++++..+
T Consensus 552 kP~ms~l~kNtrGiiFls~P 571 (697)
T KOG2029|consen 552 KPDMSNLNKNTRGIIFLSVP 571 (697)
T ss_pred CchhhhhhccCCceEEEecC
Confidence 343 23345577777665
No 208
>PLN02454 triacylglycerol lipase
Probab=95.72 E-value=0.021 Score=50.42 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=23.9
Q ss_pred HHHHHHHHHcCCCc--eEEEEEchhHHHHHHHHHHc
Q 045335 124 LDVLKLVAQLRITP--RVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 124 ~dl~~~l~~l~~~~--~~lvGhS~Gg~ia~~~a~~~ 157 (339)
..|.++++.....+ +++.|||+||.+|+..|...
T Consensus 214 ~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~di 249 (414)
T PLN02454 214 AKIKELLERYKDEKLSIVLTGHSLGASLATLAAFDI 249 (414)
T ss_pred HHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHHH
Confidence 33444444443333 89999999999999998643
No 209
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=95.71 E-value=0.029 Score=44.73 Aligned_cols=58 Identities=14% Similarity=0.074 Sum_probs=42.9
Q ss_pred eEEEEeeCCCCCC-----CC------CCCCHHHHHHHHHHHHHHcCC-CceEEEEEchhHHHHHHHHHHc
Q 045335 100 QTCDVMVIPHQSR-----KG------GLTTVASTALDVLKLVAQLRI-TPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 100 ~vi~~D~~G~G~S-----~~------~~~~~~~~a~dl~~~l~~l~~-~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+|++|=+|=.... .. -..-..|..+.+..+|++.+. ++++|+|||-|+.+..++...+
T Consensus 47 ~vfAP~YRQatl~~~~~~~~~~~~~a~~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~ 116 (207)
T PF11288_consen 47 NVFAPRYRQATLYAFLDTDREDAEKAFDLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEE 116 (207)
T ss_pred ccccChhhcchhhhhhccCcchhHHHHHhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHH
Confidence 8888776643211 11 124577888888888888865 4899999999999999998765
No 210
>PLN00413 triacylglycerol lipase
Probab=95.69 E-value=0.022 Score=50.91 Aligned_cols=37 Identities=19% Similarity=0.307 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 119 VASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
..++.+.+.++++.....++++.|||+||++|..+|.
T Consensus 267 yy~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 267 YYTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 3456677888888777678999999999999999885
No 211
>PLN02408 phospholipase A1
Probab=95.44 E-value=0.028 Score=48.93 Aligned_cols=37 Identities=14% Similarity=0.221 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHcCCC--ceEEEEEchhHHHHHHHHHHcc
Q 045335 122 TALDVLKLVAQLRIT--PRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~--~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.|..+++..... ++++.|||+||.+|...|....
T Consensus 184 Vl~eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~dl~ 222 (365)
T PLN02408 184 VREEIARLLQSYGDEPLSLTITGHSLGAALATLTAYDIK 222 (365)
T ss_pred HHHHHHHHHHhcCCCCceEEEeccchHHHHHHHHHHHHH
Confidence 345666677665543 5899999999999999987543
No 212
>PF05576 Peptidase_S37: PS-10 peptidase S37; InterPro: IPR008761 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. These group of serine peptidases belong to MEROPS peptidase family S37 (clan SC). The members of this group of secreted peptidases are restricted to bacteria. In Streptomyces lividans the peptidase removes tripeptides from the N terminus of extracellular proteins (tripeptidyl aminopeptidase,Tap) [, ].
Probab=95.43 E-value=0.03 Score=48.96 Aligned_cols=100 Identities=16% Similarity=0.049 Sum_probs=75.8
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC-----CCHHHHHHHHHHHHHHcCC---Cce
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL-----TTVASTALDVLKLVAQLRI---TPR 138 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~-----~~~~~~a~dl~~~l~~l~~---~~~ 138 (339)
.++|+|+..-|.+.+....+.-...|.+. +-+.+..|=||.|.+.+ .++..-|.|.+.++++++. ++-
T Consensus 61 ~drPtV~~T~GY~~~~~p~r~Ept~Lld~----NQl~vEhRfF~~SrP~p~DW~~Lti~QAA~D~Hri~~A~K~iY~~kW 136 (448)
T PF05576_consen 61 FDRPTVLYTEGYNVSTSPRRSEPTQLLDG----NQLSVEHRFFGPSRPEPADWSYLTIWQAASDQHRIVQAFKPIYPGKW 136 (448)
T ss_pred CCCCeEEEecCcccccCccccchhHhhcc----ceEEEEEeeccCCCCCCCCcccccHhHhhHHHHHHHHHHHhhccCCc
Confidence 36899999999988654333222233333 77999999999995433 6899999999999998843 567
Q ss_pred EEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 139 VLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+=-|-|-||+.++.+=.-||+ .|.+.|...++
T Consensus 137 ISTG~SKGGmTa~y~rrFyP~---DVD~tVaYVAP 168 (448)
T PF05576_consen 137 ISTGGSKGGMTAVYYRRFYPD---DVDGTVAYVAP 168 (448)
T ss_pred eecCcCCCceeEEEEeeeCCC---CCCeeeeeecc
Confidence 778999999999999999999 66666655443
No 213
>PLN02934 triacylglycerol lipase
Probab=95.39 E-value=0.028 Score=50.65 Aligned_cols=37 Identities=19% Similarity=0.311 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 119 VASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
.+.+.+.+.+++++....++++.|||+||++|..+|.
T Consensus 304 y~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 304 YYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 3456677777888777678999999999999999975
No 214
>COG2830 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.05 E-value=0.18 Score=38.03 Aligned_cols=79 Identities=13% Similarity=-0.049 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
...||..-||+.....+.+++ |.+.+ --++++|+...... .++. ..+.+-||++|||-.
T Consensus 11 d~LIvyFaGwgtpps~v~HLi--lpeN~--dl~lcYDY~dl~ld----fDfs-------------Ay~hirlvAwSMGVw 69 (214)
T COG2830 11 DHLIVYFAGWGTPPSAVNHLI--LPENH--DLLLCYDYQDLNLD----FDFS-------------AYRHIRLVAWSMGVW 69 (214)
T ss_pred CEEEEEEecCCCCHHHHhhcc--CCCCC--cEEEEeehhhcCcc----cchh-------------hhhhhhhhhhhHHHH
Confidence 347888999999888877763 44443 15778888643322 1111 114567999999999
Q ss_pred HHHHHHHHccCCCCCCceEEEEecc
Q 045335 149 VVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 149 ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+|-++.... +.+..+.++++
T Consensus 70 vAeR~lqg~-----~lksatAiNGT 89 (214)
T COG2830 70 VAERVLQGI-----RLKSATAINGT 89 (214)
T ss_pred HHHHHHhhc-----cccceeeecCC
Confidence 999988766 44566666665
No 215
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=95.02 E-value=1.4 Score=41.18 Aligned_cols=108 Identities=16% Similarity=0.070 Sum_probs=71.0
Q ss_pred eeCeeEE----EeeccCCCCCCCCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCC----------C
Q 045335 51 IQGTLVR----WSSMMDKSIPDPPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRK----------G 114 (339)
Q Consensus 51 ~~g~~l~----~~~~g~~~~~~~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~----------~ 114 (339)
-||+++. |+.. ...++.+|.+|.--|.-+.. ..|....-.|.++ |+---....||=|.=. .
T Consensus 427 ~dgv~VPVSLvyrkd-~~~~g~~p~lLygYGaYG~s~~p~Fs~~~lSLlDR--GfiyAIAHVRGGgelG~~WYe~GK~l~ 503 (682)
T COG1770 427 DDGVQVPVSLVYRKD-TKLDGSAPLLLYGYGAYGISMDPSFSIARLSLLDR--GFVYAIAHVRGGGELGRAWYEDGKLLN 503 (682)
T ss_pred CCCcEeeEEEEEecc-cCCCCCCcEEEEEeccccccCCcCcccceeeeecC--ceEEEEEEeecccccChHHHHhhhhhh
Confidence 4666644 3322 22445678888888876654 3455444456666 5433344567765321 2
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCceEEEEEchhHHHHHHHHHHccCCC
Q 045335 115 GLTTVASTALDVLKLVAQL--RITPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 115 ~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
...|+.|+.+....++++- ..+.++++|-|.||+++-..+...|+++
T Consensus 504 K~NTf~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf 552 (682)
T COG1770 504 KKNTFTDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLF 552 (682)
T ss_pred ccccHHHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhh
Confidence 3478999888888877653 2257899999999999999999999965
No 216
>KOG2521 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.00 E-value=1.4 Score=38.41 Aligned_cols=106 Identities=10% Similarity=0.091 Sum_probs=65.0
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC---CCCCCCHHHHHHHHHHHHHHcC--CCceEEEEE
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR---KGGLTTVASTALDVLKLVAQLR--ITPRVLVGH 143 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S---~~~~~~~~~~a~dl~~~l~~l~--~~~~~lvGh 143 (339)
..+||.+=||.+..+-|..-.-.+-... |+.++-+-.|-+-.. ..+..+......-+.+++...+ ..++++--.
T Consensus 38 ~k~Iv~~~gWag~~~r~l~ky~~~Yq~~-g~~~~~~tap~~~~~~~~s~~~~sl~~~~~~l~~L~~~~~~~~~pi~fh~F 116 (350)
T KOG2521|consen 38 EKPIVVLLGWAGAIDRNLMKYSKIYQDK-GYIVVRITAPCPSVFLSASRRILSLSLASTRLSELLSDYNSDPCPIIFHVF 116 (350)
T ss_pred cccEEEEeeeccccchhHHHHHHHHhcC-CceEEEecCcccccccccccccchhhHHHHHHHHHhhhccCCcCceEEEEe
Confidence 4478888888888776654433333333 788888888866433 2344666677777788887776 346677788
Q ss_pred chhHHHHHHHH---H-Hc-cCCCCCCceEEEEeccCCC
Q 045335 144 SFGGKVVLSMV---E-QA-AKPLARPVRVWVLDATPGK 176 (339)
Q Consensus 144 S~Gg~ia~~~a---~-~~-p~~~~~v~~lv~l~~~~~~ 176 (339)
|+||...+..- . ++ |... .+.+-++.++.|..
T Consensus 117 S~ng~~~~~si~~~~~~~~~~~~-~~~~~~~fdS~p~~ 153 (350)
T KOG2521|consen 117 SGNGVRLMYSISLQLIKHEPKAA-QLSGGIIFDSAPAR 153 (350)
T ss_pred cCCceeehHHHHHHHhhcCchhH-hhcCCceEeccccc
Confidence 99987765443 1 22 4433 33343445555443
No 217
>PLN02310 triacylglycerol lipase
Probab=94.99 E-value=0.072 Score=47.05 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHcC----CCceEEEEEchhHHHHHHHHHH
Q 045335 120 ASTALDVLKLVAQLR----ITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~----~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+++.+.+.++++... ..++.+.|||+||.+|+..|..
T Consensus 189 ~qVl~eV~~L~~~y~~~~e~~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 189 EQVMQEVKRLVNFYRGKGEEVSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred HHHHHHHHHHHHhhcccCCcceEEEEcccHHHHHHHHHHHH
Confidence 344556666666552 1368999999999999988854
No 218
>PLN02324 triacylglycerol lipase
Probab=94.87 E-value=0.05 Score=48.03 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCCC--ceEEEEEchhHHHHHHHHHH
Q 045335 122 TALDVLKLVAQLRIT--PRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 122 ~a~dl~~~l~~l~~~--~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+.+.|..+++..... ++.+.|||+||.+|+..|..
T Consensus 199 Vl~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 199 VQGELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 345566677665432 58999999999999999864
No 219
>KOG2237 consensus Predicted serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.83 E-value=0.041 Score=50.62 Aligned_cols=118 Identities=15% Similarity=0.040 Sum_probs=78.7
Q ss_pred CCcceeEEeeeCeeEEEeecc---CCCCCCCCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeCCCCCCC---
Q 045335 42 PSGVLAYDLIQGTLVRWSSMM---DKSIPDPPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVIPHQSRK--- 113 (339)
Q Consensus 42 ~~~~~~~~~~~g~~l~~~~~g---~~~~~~~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~--- 113 (339)
...++.|...||+.+.....- ....+..|.+|..+|..+-. ..|+.---.|.+. |+-....|.||=|.=.
T Consensus 440 ~~~r~~~~SkDGt~VPM~Iv~kk~~k~dg~~P~LLygYGay~isl~p~f~~srl~lld~--G~Vla~a~VRGGGe~G~~W 517 (712)
T KOG2237|consen 440 VVERIEVSSKDGTKVPMFIVYKKDIKLDGSKPLLLYGYGAYGISLDPSFRASRLSLLDR--GWVLAYANVRGGGEYGEQW 517 (712)
T ss_pred EEEEEEEecCCCCccceEEEEechhhhcCCCceEEEEecccceeeccccccceeEEEec--ceEEEEEeeccCcccccch
Confidence 445666777788876543332 22334567777777655422 3454433344553 7677778899876331
Q ss_pred -------CCCCCHHHHHHHHHHHHHHc--CCCceEEEEEchhHHHHHHHHHHccCCC
Q 045335 114 -------GGLTTVASTALDVLKLVAQL--RITPRVLVGHSFGGKVVLSMVEQAAKPL 161 (339)
Q Consensus 114 -------~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~p~~~ 161 (339)
....+++|+..-...+++.- ...+..+.|.|.||.++-.++..+|+++
T Consensus 518 Hk~G~lakKqN~f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF 574 (712)
T KOG2237|consen 518 HKDGRLAKKQNSFDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLF 574 (712)
T ss_pred hhccchhhhcccHHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHh
Confidence 13468888888887777643 3367899999999999999999999976
No 220
>PLN02802 triacylglycerol lipase
Probab=94.48 E-value=0.067 Score=48.35 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcCC--CceEEEEEchhHHHHHHHHHHc
Q 045335 121 STALDVLKLVAQLRI--TPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
++.+.+..+++.... .++++.|||+||.+|...|...
T Consensus 313 qVl~eV~~Ll~~Y~~e~~sI~VTGHSLGGALAtLaA~dL 351 (509)
T PLN02802 313 SVVGEVRRLMEKYKGEELSITVTGHSLGAALALLVADEL 351 (509)
T ss_pred HHHHHHHHHHHhCCCCcceEEEeccchHHHHHHHHHHHH
Confidence 344556666665543 2589999999999999988754
No 221
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=94.31 E-value=0.081 Score=41.58 Aligned_cols=55 Identities=24% Similarity=0.135 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHH--cc-CCCCCCceEEEEecc
Q 045335 119 VASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQ--AA-KPLARPVRVWVLDAT 173 (339)
Q Consensus 119 ~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~--~p-~~~~~v~~lv~l~~~ 173 (339)
..++.+.+.+........+++|+|+|.|+.++..++.. .+ ...++|.+++++..+
T Consensus 64 ~~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP 121 (179)
T PF01083_consen 64 VANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDP 121 (179)
T ss_dssp HHHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-T
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCC
Confidence 33444455555555555789999999999999999877 22 222366677777554
No 222
>PLN02753 triacylglycerol lipase
Probab=94.24 E-value=0.079 Score=48.08 Aligned_cols=36 Identities=22% Similarity=0.315 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCC-----CceEEEEEchhHHHHHHHHHH
Q 045335 121 STALDVLKLVAQLRI-----TPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~-----~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
++.+.|..+++.... .++.+.|||+||.+|...|..
T Consensus 292 QVl~eVkrLl~~Y~~e~~~~~sItVTGHSLGGALAtLaA~D 332 (531)
T PLN02753 292 QILTEVKRLVEEHGDDDDSDLSITVTGHSLGGALAILSAYD 332 (531)
T ss_pred HHHHHHHHHHHHcccccCCCceEEEEccCHHHHHHHHHHHH
Confidence 344556666665532 478999999999999999863
No 223
>KOG1283 consensus Serine carboxypeptidases [Posttranslational modification, protein turnover, chaperones]
Probab=94.22 E-value=0.52 Score=39.92 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=71.8
Q ss_pred eeEEee-eCeeEEEeeccC-CCC-CCCCeEEEEcCCCCChh----hHHHHH-----------HHHHHhCCCceEEEEeeC
Q 045335 46 LAYDLI-QGTLVRWSSMMD-KSI-PDPPTAVLLHGILGSRK----NWGTFA-----------RRLARAYPTWQTCDVMVI 107 (339)
Q Consensus 46 ~~~~~~-~g~~l~~~~~g~-~~~-~~~~~vv~lHG~~~~~~----~~~~~~-----------~~L~~~~~g~~vi~~D~~ 107 (339)
+.|+.+ ++..++|..+.. .+. ...|..+.+.|.++.+. .|+++- ..|... .++.+|-|
T Consensus 5 wg~v~vr~~a~~F~wly~~~~~~ks~~pl~lwlqGgpGaSstG~GNFeE~GPl~~~~~~r~~TWlk~a----dllfvDnP 80 (414)
T KOG1283|consen 5 WGYVDVRTGAHMFWWLYYATANVKSERPLALWLQGGPGASSTGFGNFEELGPLDLDGSPRDWTWLKDA----DLLFVDNP 80 (414)
T ss_pred ccceeeecCceEEEEEeeeccccccCCCeeEEecCCCCCCCcCccchhhcCCcccCCCcCCchhhhhc----cEEEecCC
Confidence 344433 566666655432 222 35677888999876542 343332 223333 77888866
Q ss_pred -CCCCCCCC-----CCCHHHHHHHHHHHHHHc-------CCCceEEEEEchhHHHHHHHHHHc
Q 045335 108 -PHQSRKGG-----LTTVASTALDVLKLVAQL-------RITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 108 -G~G~S~~~-----~~~~~~~a~dl~~~l~~l-------~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
|.|.|.-. ..+.++.|.|+.++++.+ +..|++|+..|+||-.|..++...
T Consensus 81 VGaGfSyVdg~~~Y~~~~~qia~Dl~~llk~f~~~h~e~~t~P~~If~ESYGGKma~k~al~l 143 (414)
T KOG1283|consen 81 VGAGFSYVDGSSAYTTNNKQIALDLVELLKGFFTNHPEFKTVPLYIFCESYGGKMAAKFALEL 143 (414)
T ss_pred CcCceeeecCcccccccHHHHHHHHHHHHHHHHhcCccccccceEEEEhhcccchhhhhhhhH
Confidence 88888322 246888999999999875 446899999999999998887644
No 224
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.18 E-value=0.16 Score=38.71 Aligned_cols=113 Identities=11% Similarity=0.033 Sum_probs=64.8
Q ss_pred CeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHH--HHHHHHhCC-CceEEEEeeCCCCC-C--C--CCC-CCHHHHH
Q 045335 53 GTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTF--ARRLARAYP-TWQTCDVMVIPHQS-R--K--GGL-TTVASTA 123 (339)
Q Consensus 53 g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~--~~~L~~~~~-g~~vi~~D~~G~G~-S--~--~~~-~~~~~~a 123 (339)
+..+.+..+|. .+.+||..+-.++.-..|+.+ +..|++... | .|-.+.+-|-.. | . +.+ ..++..+
T Consensus 14 ~RdMel~ryGH----aG~pVvvFpts~Grf~eyed~G~v~ala~fie~G-~vQlft~~gldsESf~a~h~~~adr~~rH~ 88 (227)
T COG4947 14 NRDMELNRYGH----AGIPVVVFPTSGGRFNEYEDFGMVDALASFIEEG-LVQLFTLSGLDSESFLATHKNAADRAERHR 88 (227)
T ss_pred cchhhhhhccC----CCCcEEEEecCCCcchhhhhcccHHHHHHHHhcC-cEEEEEecccchHhHhhhcCCHHHHHHHHH
Confidence 45567777787 456677777766666666443 344443221 2 444444444432 2 1 111 1222223
Q ss_pred HHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 124 LDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 124 ~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+--..++++.-.....+-|.||||..|..+.-++|+.+. ++|.+++.
T Consensus 89 AyerYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lft---kvialSGv 135 (227)
T COG4947 89 AYERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFT---KVIALSGV 135 (227)
T ss_pred HHHHHHHHhhcCCCccccccchhhhhhhhhheeChhHhh---hheeecce
Confidence 333334444433567888999999999999999999554 66666543
No 225
>PLN03037 lipase class 3 family protein; Provisional
Probab=94.14 E-value=0.083 Score=47.89 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHcC----CCceEEEEEchhHHHHHHHHHH
Q 045335 121 STALDVLKLVAQLR----ITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 121 ~~a~dl~~~l~~l~----~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+..++|..+++... ..++.+.|||+||.+|+..|..
T Consensus 299 QVl~eV~rLv~~Yk~~ge~~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 299 QVMEEVKRLVNFFKDRGEEVSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred HHHHHHHHHHHhccccCCcceEEEeccCHHHHHHHHHHHH
Confidence 34566777776553 1358999999999999988854
No 226
>PLN02761 lipase class 3 family protein
Probab=93.94 E-value=0.1 Score=47.42 Aligned_cols=36 Identities=22% Similarity=0.293 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHcC------CCceEEEEEchhHHHHHHHHHH
Q 045335 121 STALDVLKLVAQLR------ITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 121 ~~a~dl~~~l~~l~------~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
++.+.|..+++... .-++.+.|||+||.+|...|..
T Consensus 273 qVl~eV~rL~~~Y~~~~k~e~~sItVTGHSLGGALAtLaA~D 314 (527)
T PLN02761 273 QVLAEVKRLVEYYGTEEEGHEISITVTGHSLGASLALVSAYD 314 (527)
T ss_pred HHHHHHHHHHHhcccccCCCCceEEEeccchHHHHHHHHHHH
Confidence 34455666666552 1368999999999999988853
No 227
>PLN02719 triacylglycerol lipase
Probab=93.83 E-value=0.1 Score=47.19 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHcCC-----CceEEEEEchhHHHHHHHHHHc
Q 045335 122 TALDVLKLVAQLRI-----TPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 122 ~a~dl~~~l~~l~~-----~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+.+.|..+++.... .++.+.|||+||.+|...|...
T Consensus 279 Vl~eV~rL~~~Ypd~~ge~~sItVTGHSLGGALAtLaA~Dl 319 (518)
T PLN02719 279 VLTEVKRLVERYGDEEGEELSITVTGHSLGGALAVLSAYDV 319 (518)
T ss_pred HHHHHHHHHHHCCcccCCcceEEEecCcHHHHHHHHHHHHH
Confidence 44555566655432 3689999999999999988643
No 228
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=93.81 E-value=0.15 Score=44.22 Aligned_cols=40 Identities=28% Similarity=0.389 Sum_probs=29.7
Q ss_pred CCCceEEEEEchhHHHHHHHHHHccCC--CCCCceEEEEecc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAAKP--LARPVRVWVLDAT 173 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p~~--~~~v~~lv~l~~~ 173 (339)
+.+|+.|||||+|+.+...+....+++ ...|..++++.++
T Consensus 218 G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~Gap 259 (345)
T PF05277_consen 218 GERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMGAP 259 (345)
T ss_pred CCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEecCC
Confidence 667899999999999999887766553 2235666777544
No 229
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=93.81 E-value=0.2 Score=43.56 Aligned_cols=57 Identities=14% Similarity=0.091 Sum_probs=39.6
Q ss_pred eEEEEeeC-CCCCCCCC---CC-CHHHHHHHHHHHHHHc-------CCCceEEEEEchhHHHHHHHHHH
Q 045335 100 QTCDVMVI-PHQSRKGG---LT-TVASTALDVLKLVAQL-------RITPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 100 ~vi~~D~~-G~G~S~~~---~~-~~~~~a~dl~~~l~~l-------~~~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
+++.+|.| |-|.|... .+ +-+..|+|+..+|+.. ...+++|.|.|+||..+-.+|..
T Consensus 3 NvLfiDqPvGvGfSy~~~~~~~~~d~~~a~d~~~fL~~Ff~~~p~~~~~~fyI~GESYaG~YiP~la~~ 71 (319)
T PLN02213 3 NIIFLDQPVGSGFSYSKTPIDKTGDISEVKRTHEFLQKWLSRHPQYFSNPLYVVGDSYSGMIVPALVQE 71 (319)
T ss_pred cEEEecCCCCCCCCCCCCCCCccccHHHHHHHHHHHHHHHHhCcccccCCeEEEeeccccchHHHHHHH
Confidence 78999988 89988432 11 2223446666666542 44689999999999987777764
No 230
>PLN02847 triacylglycerol lipase
Probab=93.35 E-value=0.16 Score=46.78 Aligned_cols=21 Identities=29% Similarity=0.370 Sum_probs=18.7
Q ss_pred CceEEEEEchhHHHHHHHHHH
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
=+++++|||+||.+|..++..
T Consensus 251 YkLVITGHSLGGGVAALLAil 271 (633)
T PLN02847 251 FKIKIVGHSLGGGTAALLTYI 271 (633)
T ss_pred CeEEEeccChHHHHHHHHHHH
Confidence 478999999999999998875
No 231
>KOG1516 consensus Carboxylesterase and related proteins [General function prediction only]
Probab=92.58 E-value=0.93 Score=42.68 Aligned_cols=103 Identities=14% Similarity=0.050 Sum_probs=54.5
Q ss_pred CCeEEEEcCCCC---ChhhHHHHH-HHHHHhCCCceEEEEeeC----CCCCC---C-CCCCCHHHHHHHHH---HHHHHc
Q 045335 69 PPTAVLLHGILG---SRKNWGTFA-RRLARAYPTWQTCDVMVI----PHQSR---K-GGLTTVASTALDVL---KLVAQL 133 (339)
Q Consensus 69 ~~~vv~lHG~~~---~~~~~~~~~-~~L~~~~~g~~vi~~D~~----G~G~S---~-~~~~~~~~~a~dl~---~~l~~l 133 (339)
-|++|++||.+- +...+.... ..+.... ..=|+.+..| |+... . +..+.+.|+...+. +-|...
T Consensus 112 ~pV~V~iHGG~~~~gs~~~~~~~~~~~~~~~~-~VVvVt~~YRLG~lGF~st~d~~~~gN~gl~Dq~~AL~wv~~~I~~F 190 (545)
T KOG1516|consen 112 LPVMVYIHGGGFQFGSASSFEIISPAYVLLLK-DVVVVTINYRLGPLGFLSTGDSAAPGNLGLFDQLLALRWVKDNIPSF 190 (545)
T ss_pred CCEEEEEeCCceeeccccchhhcCchhccccC-CEEEEEecccceeceeeecCCCCCCCcccHHHHHHHHHHHHHHHHhc
Confidence 588999999863 333332221 1222221 1234444433 33222 2 24466666655544 444455
Q ss_pred CC--CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 134 RI--TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 134 ~~--~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+. +++.|+|||.||..+..+... |..-....+.|.++++
T Consensus 191 GGdp~~vTl~G~saGa~~v~~l~~S-p~s~~LF~~aI~~SG~ 231 (545)
T KOG1516|consen 191 GGDPKNVTLFGHSAGAASVSLLTLS-PHSRGLFHKAISMSGN 231 (545)
T ss_pred CCCCCeEEEEeechhHHHHHHHhcC-HhhHHHHHHHHhhccc
Confidence 43 579999999999999887653 2211123345555544
No 232
>KOG4569 consensus Predicted lipase [Lipid transport and metabolism]
Probab=92.20 E-value=0.26 Score=43.09 Aligned_cols=38 Identities=16% Similarity=0.216 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 120 ASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
..+.+++..+++...--++.+-|||+||.+|...|..-
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~i 192 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALDL 192 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHHH
Confidence 67778888888888766799999999999999988753
No 233
>COG4287 PqaA PhoPQ-activated pathogenicity-related protein [General function prediction only]
Probab=91.69 E-value=0.4 Score=41.40 Aligned_cols=55 Identities=13% Similarity=0.055 Sum_probs=37.5
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCe-eEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGV-EMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~-~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
+|-.++.+..| |+.++....-+...+ |+. .+..+|+..|...- +.+.+.|..|+.
T Consensus 330 lpKyivnaSgD-------dff~pDsa~lYyd~L-PG~kaLrmvPN~~H~~~n---~~i~esl~~fln 385 (507)
T COG4287 330 LPKYIVNASGD-------DFFVPDSANLYYDDL-PGEKALRMVPNDPHNLIN---QFIKESLEPFLN 385 (507)
T ss_pred ccceeecccCC-------cccCCCccceeeccC-CCceeeeeCCCCcchhhH---HHHHHHHHHHHH
Confidence 78888888887 777777777777764 554 67778998887653 333444444443
No 234
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=91.23 E-value=1.2 Score=36.53 Aligned_cols=61 Identities=16% Similarity=0.108 Sum_probs=42.4
Q ss_pred CCceEEEEeeCCC-C-C----CCCCCCCHHHHHHHHHHHHHHc--CCCceEEEEEchhHHHHHHHHHHc
Q 045335 97 PTWQTCDVMVIPH-Q-S----RKGGLTTVASTALDVLKLVAQL--RITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 97 ~g~~vi~~D~~G~-G-~----S~~~~~~~~~~a~dl~~~l~~l--~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
||+++..++.|.. + . +..-..|+.+=++.+.+.++.. .-++++++|+|.|+.++...+.+.
T Consensus 1 p~~~~~~V~YPa~f~P~~g~~~~t~~~Sv~~G~~~L~~ai~~~~~~~~~vvV~GySQGA~Va~~~~~~l 69 (225)
T PF08237_consen 1 PGYNVVAVDYPASFWPVTGIGSPTYDESVAEGVANLDAAIRAAIAAGGPVVVFGYSQGAVVASNVLRRL 69 (225)
T ss_pred CCcceEEecCCchhcCcCCCCCCccchHHHHHHHHHHHHHHhhccCCCCEEEEEECHHHHHHHHHHHHH
Confidence 4667788888761 1 1 1122356677777777777762 237899999999999999887765
No 235
>PRK12467 peptide synthase; Provisional
Probab=90.84 E-value=1.5 Score=51.32 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=72.4
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcC-CCceEEEEEchhH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLR-ITPRVLVGHSFGG 147 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~-~~~~~lvGhS~Gg 147 (339)
-+.+++.|....+...+..+...|.... .++.+..++.-.......+++.++....+.+.... ..+..+.|+|+||
T Consensus 3692 ~~~l~~~h~~~r~~~~~~~l~~~l~~~~---~~~~l~~~~~~~d~~~~~~~~~~~~~y~~~~~~~~~~~p~~l~g~s~g~ 3768 (3956)
T PRK12467 3692 FPALFCRHEGLGTVFDYEPLAVILEGDR---HVLGLTCRHLLDDGWQDTSLQAMAVQYADYILWQQAKGPYGLLGWSLGG 3768 (3956)
T ss_pred ccceeeechhhcchhhhHHHHHHhCCCC---cEEEEeccccccccCCccchHHHHHHHHHHHHHhccCCCeeeeeeecch
Confidence 3569999999998888888877776554 78888877664444455678888888877776654 3578999999999
Q ss_pred HHHHHHHHHccCCCCCCceEEEEecc
Q 045335 148 KVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 148 ~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
.++..++...-..-..+.-+.+++..
T Consensus 3769 ~~a~~~~~~l~~~g~~~~~~~~~~~~ 3794 (3956)
T PRK12467 3769 TLARLVAELLEREGESEAFLGLFDNT 3794 (3956)
T ss_pred HHHHHHHHHHHHcCCceeEEEEEecc
Confidence 99999887543222134444455443
No 236
>PLN02213 sinapoylglucose-malate O-sinapoyltransferase/ carboxypeptidase
Probab=88.88 E-value=0.99 Score=39.20 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=43.6
Q ss_pred CceeeEEeccchhhhh--hhhhHHHHHHHH---------------HHHHhCCCC-eeEEEecCCCccccccChhHHHHHH
Q 045335 271 GVHVNFLKAERSLHRW--ALEDIQRIHAAE---------------ELAVDGGGG-VEMHVLEDAGHWVHADNPDGLFRIL 332 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~--g~~d~~~~~~~~---------------~~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i 332 (339)
+++||+..|+.|.++. |.+.++..-.+. ...+. ..+ .+++++.+|||+++ .+|+...+.+
T Consensus 233 ~i~VliY~Gd~D~icn~~g~~~wi~~L~w~~~~~~~~w~~~~~~~G~vk~-y~~~ltf~~V~~AGHmV~-~qP~~al~m~ 310 (319)
T PLN02213 233 GYRSLIYSGDHDIAVPFLATQAWIRSLNYSPIHNWRPWMINNQIAGYTRA-YSNKMTFATIKAGGHTAE-YRPNETFIMF 310 (319)
T ss_pred CceEEEEECCcCeeCCcHhHHHHHHhcCCCCCCCCccccCCCEeeeEEEE-ecCcceEEEEcCCCCCCC-cCHHHHHHHH
Confidence 4899999999986542 333322211100 00001 123 78888999999997 5999999999
Q ss_pred HHhhhc
Q 045335 333 TSSFEG 338 (339)
Q Consensus 333 ~~fl~~ 338 (339)
..|+..
T Consensus 311 ~~fi~~ 316 (319)
T PLN02213 311 QRWISG 316 (319)
T ss_pred HHHHcC
Confidence 999964
No 237
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=87.66 E-value=3.3 Score=30.23 Aligned_cols=64 Identities=17% Similarity=0.185 Sum_probs=35.9
Q ss_pred CCCCCeEEEEcCCCCChhhH--HHHHHHHHHhC-CCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 66 IPDPPTAVLLHGILGSRKNW--GTFARRLARAY-PTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 66 ~~~~~~vv~lHG~~~~~~~~--~~~~~~L~~~~-~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
.+++|.|+-+||+.+++..| +.+++.|-... ..-.|..+...-| -+....++++-++|...|..
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~h---FP~~~~v~~Yk~~L~~~I~~ 115 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHH---FPHNSNVDEYKEQLKSWIRG 115 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeeccccc---CCCchHHHHHHHHHHHHHHH
Confidence 45789999999999999877 33444443321 0011222111100 11335677888888777754
No 238
>COG4553 DepA Poly-beta-hydroxyalkanoate depolymerase [Lipid metabolism]
Probab=87.65 E-value=10 Score=32.08 Aligned_cols=99 Identities=8% Similarity=0.027 Sum_probs=66.0
Q ss_pred CCCeEEEEcCCCCChh-hHHHHHHHHHHhCCCceEEEEeeCCCCCC--CCCCCCHHHHHHHHHHHHHHcCCCceEEEEEc
Q 045335 68 DPPTAVLLHGILGSRK-NWGTFARRLARAYPTWQTCDVMVIPHQSR--KGGLTTVASTALDVLKLVAQLRITPRVLVGHS 144 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~-~~~~~~~~L~~~~~g~~vi~~D~~G~G~S--~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS 144 (339)
..|.|+++--+.+... .-+...+.|.... .|+.-||--.-.- ....+.++++.+-+.+.++.+|.+ +++++-+
T Consensus 102 pdPkvLivapmsGH~aTLLR~TV~alLp~~---~vyitDW~dAr~Vp~~~G~FdldDYIdyvie~~~~~Gp~-~hv~aVC 177 (415)
T COG4553 102 PDPKVLIVAPMSGHYATLLRGTVEALLPYH---DVYITDWVDARMVPLEAGHFDLDDYIDYVIEMINFLGPD-AHVMAVC 177 (415)
T ss_pred CCCeEEEEecccccHHHHHHHHHHHhcccc---ceeEeeccccceeecccCCccHHHHHHHHHHHHHHhCCC-CcEEEEe
Confidence 3567777777766553 4456667776665 8999998744322 234589999999999999999954 7777776
Q ss_pred hhH-----HHHHHHHHHccCCCCCCceEEEEecc
Q 045335 145 FGG-----KVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 145 ~Gg-----~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
--+ .+++.-+...|. .....++++++
T Consensus 178 QP~vPvLAAisLM~~~~~p~---~PssMtlmGgP 208 (415)
T COG4553 178 QPTVPVLAAISLMEEDGDPN---VPSSMTLMGGP 208 (415)
T ss_pred cCCchHHHHHHHHHhcCCCC---CCceeeeecCc
Confidence 543 344444444554 45566666554
No 239
>KOG4388 consensus Hormone-sensitive lipase HSL [Lipid transport and metabolism]
Probab=87.25 E-value=4.4 Score=37.57 Aligned_cols=89 Identities=19% Similarity=0.103 Sum_probs=51.5
Q ss_pred CCCCeEEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHH---HcCC--Cce
Q 045335 67 PDPPTAVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVA---QLRI--TPR 138 (339)
Q Consensus 67 ~~~~~vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~---~l~~--~~~ 138 (339)
+++-.|+-+||.|- ++..-+..+...+... |..|+.+|+-=.-+.+-+ .-+++.-=....+|+ .+|. +++
T Consensus 394 ~S~sli~HcHGGGfVAqsSkSHE~YLr~Wa~aL-~cPiiSVdYSLAPEaPFP-RaleEv~fAYcW~inn~allG~TgEri 471 (880)
T KOG4388|consen 394 RSRSLIVHCHGGGFVAQSSKSHEPYLRSWAQAL-GCPIISVDYSLAPEAPFP-RALEEVFFAYCWAINNCALLGSTGERI 471 (880)
T ss_pred CCceEEEEecCCceeeeccccccHHHHHHHHHh-CCCeEEeeeccCCCCCCC-cHHHHHHHHHHHHhcCHHHhCcccceE
Confidence 34456777999874 3334444455555555 779999997422222211 233333222222332 3343 689
Q ss_pred EEEEEchhHHHHHHHHHHc
Q 045335 139 VLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~~ 157 (339)
+++|-|.||.+.+..|.+.
T Consensus 472 v~aGDSAGgNL~~~VaLr~ 490 (880)
T KOG4388|consen 472 VLAGDSAGGNLCFTVALRA 490 (880)
T ss_pred EEeccCCCcceeehhHHHH
Confidence 9999999999877666543
No 240
>PLN02209 serine carboxypeptidase
Probab=87.05 E-value=1.5 Score=39.79 Aligned_cols=66 Identities=9% Similarity=0.074 Sum_probs=44.3
Q ss_pred CceeeEEeccchhhhh--hhhhHHHHHHHHH---------------HHHhCCCC-eeEEEecCCCccccccChhHHHHHH
Q 045335 271 GVHVNFLKAERSLHRW--ALEDIQRIHAAEE---------------LAVDGGGG-VEMHVLEDAGHWVHADNPDGLFRIL 332 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~--g~~d~~~~~~~~~---------------~~~~~~~~-~~~~~i~~~gH~~~~e~p~~~~~~i 332 (339)
+++||+..|+.|.++. |.+.++..-.+.. ..+. ..+ .+++.+.+|||++. .+|+...+.+
T Consensus 351 girVLiY~GD~D~icn~~Gte~wi~~L~w~~~~~~~~w~~~~q~aG~vk~-y~n~Ltfv~V~~AGHmVp-~qP~~al~m~ 428 (437)
T PLN02209 351 GYRSLIFSGDHDITMPFQATQAWIKSLNYSIIDDWRPWMIKGQIAGYTRT-YSNKMTFATVKGGGHTAE-YLPEESSIMF 428 (437)
T ss_pred CceEEEEECCccccCCcHhHHHHHHhcCCccCCCeeeeEECCEeeeEEEE-eCCceEEEEEcCCCCCcC-cCHHHHHHHH
Confidence 4899999999986653 3333222111000 0000 144 78899999999996 5999999999
Q ss_pred HHhhhc
Q 045335 333 TSSFEG 338 (339)
Q Consensus 333 ~~fl~~ 338 (339)
..|+..
T Consensus 429 ~~fi~~ 434 (437)
T PLN02209 429 QRWISG 434 (437)
T ss_pred HHHHcC
Confidence 999864
No 241
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=84.65 E-value=2.2 Score=35.65 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCceEEEEEchhHHHHHHHHHHc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
.-.++.|-|||+||.+|..+-.++
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 274 PDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCceEEEeccccchHHHHHhcccc
Confidence 446789999999999999998776
No 242
>KOG4540 consensus Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking, secretion, and vesicular transport; Lipid transport and metabolism]
Probab=84.65 E-value=2.2 Score=35.65 Aligned_cols=24 Identities=25% Similarity=0.260 Sum_probs=20.6
Q ss_pred CCCceEEEEEchhHHHHHHHHHHc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
.-.++.|-|||+||.+|..+-.++
T Consensus 274 pda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 274 PDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred CCceEEEeccccchHHHHHhcccc
Confidence 446789999999999999998776
No 243
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=82.99 E-value=4.1 Score=38.01 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=25.3
Q ss_pred HHHHH-HHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 126 VLKLV-AQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 126 l~~~l-~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+.+++ +..|+++-.++|||+|=..|+..|--.
T Consensus 254 La~ll~~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 254 LTQLLCDEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HHHHHHHhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 34455 578999999999999999888877543
No 244
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=78.51 E-value=15 Score=29.57 Aligned_cols=53 Identities=15% Similarity=0.088 Sum_probs=43.7
Q ss_pred eEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEch----hHHHHHHHHHHcc
Q 045335 100 QTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSF----GGKVVLSMVEQAA 158 (339)
Q Consensus 100 ~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~----Gg~ia~~~a~~~p 158 (339)
+|+..|.++. ..|+.+.+++.+.+++++.+ ..++|+|+|. |..++-.+|++.-
T Consensus 79 ~V~~~~~~~~-----~~~~~e~~a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAarLg 135 (202)
T cd01714 79 RAILVSDRAF-----AGADTLATAKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAELLG 135 (202)
T ss_pred EEEEEecccc-----cCCChHHHHHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHHhC
Confidence 7888876633 24789999999999999887 6789999999 8899999998764
No 245
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=76.79 E-value=4.6 Score=37.23 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=46.4
Q ss_pred CceEEEEeeCCCCCCCC---CC--C-----------CHHHHHHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHcc
Q 045335 98 TWQTCDVMVIPHQSRKG---GL--T-----------TVASTALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~---~~--~-----------~~~~~a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
||-+..=|- ||..+.. .. . ++.+++.--.+++++. ..+.-+..|.|-||.-++..|.+||
T Consensus 59 G~A~~~TD~-Gh~~~~~~~~~~~~~n~~~~~dfa~ra~h~~~~~aK~l~~~~Yg~~p~~sY~~GcS~GGRqgl~~AQryP 137 (474)
T PF07519_consen 59 GYATASTDS-GHQGSAGSDDASFGNNPEALLDFAYRALHETTVVAKALIEAFYGKAPKYSYFSGCSTGGRQGLMAAQRYP 137 (474)
T ss_pred CeEEEEecC-CCCCCcccccccccCCHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCceEEEEeCCCcchHHHHHHhCh
Confidence 678888774 7764422 11 1 2333344444455443 3356799999999999999999999
Q ss_pred CCCCCCceEEEEecc
Q 045335 159 KPLARPVRVWVLDAT 173 (339)
Q Consensus 159 ~~~~~v~~lv~l~~~ 173 (339)
+.++ +++.-.++
T Consensus 138 ~dfD---GIlAgaPA 149 (474)
T PF07519_consen 138 EDFD---GILAGAPA 149 (474)
T ss_pred hhcC---eEEeCCch
Confidence 9554 66555443
No 246
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=76.54 E-value=31 Score=27.75 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCc-eEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEE
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTW-QTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVL 140 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~-~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~l 140 (339)
+...|++.||....+.....-++.+-..+ || .|+....-||- ..+++.+.++..+++.++|
T Consensus 137 ~e~~vlmgHGt~h~s~~~YacLd~~~~~~-~f~~v~v~~ve~yP-----------~~d~vi~~l~~~~~~~v~L 198 (265)
T COG4822 137 DEILVLMGHGTDHHSNAAYACLDHVLDEY-GFDNVFVAAVEGYP-----------LVDTVIEYLRKNGIKEVHL 198 (265)
T ss_pred CeEEEEEecCCCccHHHHHHHHHHHHHhc-CCCceEEEEecCCC-----------cHHHHHHHHHHcCCceEEE
Confidence 34456666776666544444444444443 55 44444433321 1344555555666655544
No 247
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=75.23 E-value=43 Score=27.23 Aligned_cols=74 Identities=16% Similarity=0.205 Sum_probs=44.0
Q ss_pred CceEEEEeeCCCCCC----CCCCCCHHHHHHHHHHHHHHcCC--CceEEEEEchhHHH----HHHHHHHccCCCCCCceE
Q 045335 98 TWQTCDVMVIPHQSR----KGGLTTVASTALDVLKLVAQLRI--TPRVLVGHSFGGKV----VLSMVEQAAKPLARPVRV 167 (339)
Q Consensus 98 g~~vi~~D~~G~G~S----~~~~~~~~~~a~dl~~~l~~l~~--~~~~lvGhS~Gg~i----a~~~a~~~p~~~~~v~~l 167 (339)
+..|+..|+-|-... ..-+.+.+++-+.+.. +.+.++ -+-+.+|-++|+.- |+.+.+.++- ...-+
T Consensus 110 ~vdvvsLDfvgDn~vIk~vy~l~ksv~dyl~~l~~-L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~---DalVl 185 (275)
T COG1856 110 LVDVVSLDFVGDNDVIKRVYKLPKSVEDYLRSLLL-LKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEP---DALVL 185 (275)
T ss_pred cCcEEEEeecCChHHHHHHHcCCccHHHHHHHHHH-HHHcCceeceeEEEEeccCcccchHHHHHHHhcCCC---CeEEE
Confidence 356777777654432 2234567777666653 344554 35578999999865 6677776644 33344
Q ss_pred EEEeccCC
Q 045335 168 WVLDATPG 175 (339)
Q Consensus 168 v~l~~~~~ 175 (339)
+++.+.|+
T Consensus 186 ~vliPtpG 193 (275)
T COG1856 186 VVLIPTPG 193 (275)
T ss_pred EEEecCCc
Confidence 45555555
No 248
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=74.80 E-value=4.1 Score=34.88 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=24.2
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
+.++++.+|+++-.++|||+|-..|+.++.
T Consensus 72 ~~~~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 72 LARLWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 445567889999999999999988877653
No 249
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=73.64 E-value=2.6 Score=36.57 Aligned_cols=29 Identities=28% Similarity=0.535 Sum_probs=23.8
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHH
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a 154 (339)
+.++++..|+++-.++|||+|=..|+.+|
T Consensus 74 l~~~l~~~Gi~P~~v~GhSlGE~aA~~aa 102 (318)
T PF00698_consen 74 LARLLRSWGIKPDAVIGHSLGEYAALVAA 102 (318)
T ss_dssp HHHHHHHTTHCESEEEESTTHHHHHHHHT
T ss_pred hhhhhcccccccceeeccchhhHHHHHHC
Confidence 45667888999999999999988877654
No 250
>PF06850 PHB_depo_C: PHB de-polymerase C-terminus; InterPro: IPR009656 This entry represents the C terminus of bacterial poly(3-hydroxybutyrate) (PHB) de-polymerase. This degrades PHB granules to oligomers and monomers of 3-hydroxy-butyric acid.
Probab=72.84 E-value=3.6 Score=32.49 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=41.8
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhC--CCC--eeEEEecCCCccccccC---hhHHHHHHHHhhhc
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDG--GGG--VEMHVLEDAGHWVHADN---PDGLFRILTSSFEG 338 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~--~~~--~~~~~i~~~gH~~~~e~---p~~~~~~i~~fl~~ 338 (339)
++++-|-|+.| |+..+.+.......+ +|. ...++.+|+||+..+.- -+++.-.|.+|+.+
T Consensus 135 taLlTVEGe~D-------DIsg~GQT~AA~~LC~glp~~~k~~~~~~g~GHYGlF~G~rwr~~I~P~i~~fi~~ 201 (202)
T PF06850_consen 135 TALLTVEGERD-------DISGPGQTHAAHDLCTGLPADMKRHHLQPGVGHYGLFNGSRWREEIYPRIREFIRQ 201 (202)
T ss_pred ceeEEeecCcc-------cCCcchHHHHHHHHhcCCCHHHhhhcccCCCCeeecccchhhhhhhhHHHHHHHHh
Confidence 78888999998 666655444433321 222 36677899999998754 46788889999864
No 251
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=72.72 E-value=5.6 Score=34.33 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.1
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
-+.+.+++.++..-.++|-|+|+.++..+|+.+
T Consensus 32 GvL~aLee~gi~~d~v~GtSaGAi~ga~ya~g~ 64 (306)
T cd07225 32 GVIKALEEAGIPVDMVGGTSIGAFIGALYAEER 64 (306)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 455666677887778999999999999999864
No 252
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=72.57 E-value=5.2 Score=34.28 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.0
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
+.+++++.++++..++|||+|=..|+.++.
T Consensus 66 l~~~l~~~g~~P~~v~GhS~GE~aAa~~aG 95 (295)
T TIGR03131 66 AWRALLALLPRPSAVAGYSVGEYAAAVVAG 95 (295)
T ss_pred HHHHHHhcCCCCcEEeecCHHHHHHHHHhC
Confidence 445567778899999999999988887653
No 253
>PRK10279 hypothetical protein; Provisional
Probab=70.91 E-value=6.6 Score=33.77 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=26.9
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.+++.++..-.++|-|+|+.++..||....
T Consensus 23 VL~aL~E~gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 23 VINALKKVGIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHHHHHcCCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 455666678888899999999999999997643
No 254
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=70.05 E-value=7.6 Score=30.17 Aligned_cols=34 Identities=18% Similarity=0.135 Sum_probs=26.5
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+.+.+++.++..-.++|-|.|+.++..++...+.
T Consensus 16 vl~aL~e~gi~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 16 VAKALRERGPLIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCCH
Confidence 4445556677777999999999999999986543
No 255
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=69.50 E-value=6.1 Score=33.65 Aligned_cols=29 Identities=21% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHHcC-CCceEEEEEchhHHHHHHHHH
Q 045335 127 LKLVAQLR-ITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 127 ~~~l~~l~-~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
.+++...+ +.+..++|||+|=..|+.+|.
T Consensus 73 ~~~l~~~g~i~p~~v~GhS~GE~aAa~~aG 102 (290)
T TIGR00128 73 YLKLKEQGGLKPDFAAGHSLGEYSALVAAG 102 (290)
T ss_pred HHHHHHcCCCCCCEEeecCHHHHHHHHHhC
Confidence 34455666 889999999999988877763
No 256
>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function.
Probab=69.15 E-value=36 Score=23.76 Aligned_cols=79 Identities=11% Similarity=0.190 Sum_probs=49.9
Q ss_pred HHHHHHHHHhCCCceEEEEeeCCCCCCCCCC--CCH-HHHHHHHHHHHHHcCCCceEEEEEchhHH--HHHHHHHHccCC
Q 045335 86 GTFARRLARAYPTWQTCDVMVIPHQSRKGGL--TTV-ASTALDVLKLVAQLRITPRVLVGHSFGGK--VVLSMVEQAAKP 160 (339)
Q Consensus 86 ~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~--~~~-~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~--ia~~~a~~~p~~ 160 (339)
.+.+..+-+.+ |+..=.+.++.+|.+...- ..- +.=.+.+..+++.....+++|||=|--.- +-..+|.++|+
T Consensus 13 y~~l~~Fl~~~-~~P~G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~DpeiY~~ia~~~P~- 90 (100)
T PF09949_consen 13 YPFLRDFLRRN-GFPAGPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDPEIYAEIARRFPG- 90 (100)
T ss_pred HHHHHHHHHhc-CCCCCceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCHHHHHHHHHHCCC-
Confidence 34444444433 5666667777776552221 111 35566788888888888999999886543 44556788999
Q ss_pred CCCCceEE
Q 045335 161 LARPVRVW 168 (339)
Q Consensus 161 ~~~v~~lv 168 (339)
+|.++.
T Consensus 91 --~i~ai~ 96 (100)
T PF09949_consen 91 --RILAIY 96 (100)
T ss_pred --CEEEEE
Confidence 554543
No 257
>COG3933 Transcriptional antiterminator [Transcription]
Probab=68.53 E-value=37 Score=30.67 Aligned_cols=76 Identities=9% Similarity=0.038 Sum_probs=59.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
-..||..||... +.+...++..|-..- -+.++|+| -+.+..++.+.+.+.+++....+=+++=-.||..
T Consensus 109 v~vIiiAHG~sT-ASSmaevanrLL~~~---~~~aiDMP-------Ldvsp~~vle~l~e~~k~~~~~~GlllLVDMGSL 177 (470)
T COG3933 109 VKVIIIAHGYST-ASSMAEVANRLLGEE---IFIAIDMP-------LDVSPSDVLEKLKEYLKERDYRSGLLLLVDMGSL 177 (470)
T ss_pred eeEEEEecCcch-HHHHHHHHHHHhhcc---ceeeecCC-------CcCCHHHHHHHHHHHHHhcCccCceEEEEecchH
Confidence 356888999864 444556676666553 78999998 6789999999999999999887767777899988
Q ss_pred HHHHHHH
Q 045335 149 VVLSMVE 155 (339)
Q Consensus 149 ia~~~a~ 155 (339)
....=..
T Consensus 178 ~~f~~~i 184 (470)
T COG3933 178 TSFGSII 184 (470)
T ss_pred HHHHHHH
Confidence 8766544
No 258
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=67.92 E-value=7.3 Score=33.63 Aligned_cols=33 Identities=27% Similarity=0.279 Sum_probs=26.6
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.|++.++..-.+.|-|+|+.++..+|..+.
T Consensus 29 Vl~aL~e~gi~~~~iaGtS~GAiva~l~A~g~~ 61 (306)
T COG1752 29 VLKALEEAGIPIDVIAGTSAGAIVAALYAAGMD 61 (306)
T ss_pred HHHHHHHcCCCccEEEecCHHHHHHHHHHcCCC
Confidence 445556667788899999999999999998643
No 259
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=67.67 E-value=8.6 Score=30.46 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.+++.++..-.++|-|.||.+|..+|..++
T Consensus 17 vl~~L~e~~~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 17 ALKALEEAGILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHHHcCCCcceEEEECHHHHHHHHHHcCCC
Confidence 344445567777789999999999999997543
No 260
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=67.24 E-value=8.9 Score=32.38 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+.+.+++.++..-.++|-|+|+.++..+|..+
T Consensus 28 VL~aLeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 28 ILQALEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHHHHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 45556777887678999999999999999764
No 261
>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=65.92 E-value=60 Score=28.79 Aligned_cols=86 Identities=19% Similarity=0.180 Sum_probs=61.1
Q ss_pred CCeEEEEcCCCCC-------hhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE
Q 045335 69 PPTAVLLHGILGS-------RKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLV 141 (339)
Q Consensus 69 ~~~vv~lHG~~~~-------~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lv 141 (339)
...||++||-+.+ .++|..+++.+.++- -+-.+|..-+|.-+ .+++-+.-+..++... +-.+|
T Consensus 171 ~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~---lip~~D~AYQGF~~----GleeDa~~lR~~a~~~---~~~lv 240 (396)
T COG1448 171 EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERG---LIPFFDIAYQGFAD----GLEEDAYALRLFAEVG---PELLV 240 (396)
T ss_pred CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcC---Ceeeeehhhhhhcc----chHHHHHHHHHHHHhC---CcEEE
Confidence 3569999986654 579999999999874 77788887666543 2677777777776653 33889
Q ss_pred EEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 142 GHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 142 GhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
..|+.=..++ |.+ ||-.+.++..
T Consensus 241 a~S~SKnfgL-----YgE---RVGa~~vva~ 263 (396)
T COG1448 241 ASSFSKNFGL-----YGE---RVGALSVVAE 263 (396)
T ss_pred Eehhhhhhhh-----hhh---ccceeEEEeC
Confidence 9998766554 677 6657766643
No 262
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=65.83 E-value=11 Score=30.85 Aligned_cols=33 Identities=18% Similarity=0.250 Sum_probs=24.9
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.+++.+++.-.++|-|.|+.+|..+|..++
T Consensus 18 vL~aL~e~gi~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 18 FLAALLEMGLEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHHHcCCCceEEEEeCHHHHHHHHHHcCCC
Confidence 334445557777789999999999999997553
No 263
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=64.84 E-value=1.2e+02 Score=28.07 Aligned_cols=86 Identities=15% Similarity=0.068 Sum_probs=58.1
Q ss_pred CCCCeEEEEcCCCCChhhHHHH--HHHHHHhCCCceEEEEeeCCCCCC-CCCCCC-HHHHHHHHHHHHHHcCCC--ceEE
Q 045335 67 PDPPTAVLLHGILGSRKNWGTF--ARRLARAYPTWQTCDVMVIPHQSR-KGGLTT-VASTALDVLKLVAQLRIT--PRVL 140 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~--~~~L~~~~~g~~vi~~D~~G~G~S-~~~~~~-~~~~a~dl~~~l~~l~~~--~~~l 140 (339)
-..|..|...|+-. ++-|+.. ...|..- -++.-|.|=-|.+ .-..-. -+.+.+-|.+.|+.|+.+ .++|
T Consensus 287 ~KPPL~VYFSGyR~-aEGFEgy~MMk~Lg~P----fLL~~DpRleGGaFYlGs~eyE~~I~~~I~~~L~~LgF~~~qLIL 361 (511)
T TIGR03712 287 FKPPLNVYFSGYRP-AEGFEGYFMMKRLGAP----FLLIGDPRLEGGAFYLGSDEYEQGIINVIQEKLDYLGFDHDQLIL 361 (511)
T ss_pred CCCCeEEeeccCcc-cCcchhHHHHHhcCCC----eEEeeccccccceeeeCcHHHHHHHHHHHHHHHHHhCCCHHHeee
Confidence 34566788999866 4444432 3344332 5666788877766 111222 345567777888999885 5899
Q ss_pred EEEchhHHHHHHHHHHc
Q 045335 141 VGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 141 vGhS~Gg~ia~~~a~~~ 157 (339)
-|-|||..=|+.+++..
T Consensus 362 SGlSMGTfgAlYYga~l 378 (511)
T TIGR03712 362 SGLSMGTFGALYYGAKL 378 (511)
T ss_pred ccccccchhhhhhcccC
Confidence 99999999999998865
No 264
>KOG2385 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.66 E-value=9.8 Score=34.81 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=28.8
Q ss_pred HcCCCceEEEEEchhHHHHHHHHHHccC--CCCCCceEEEEecc
Q 045335 132 QLRITPRVLVGHSFGGKVVLSMVEQAAK--PLARPVRVWVLDAT 173 (339)
Q Consensus 132 ~l~~~~~~lvGhS~Gg~ia~~~a~~~p~--~~~~v~~lv~l~~~ 173 (339)
.+|.+|+.|||+|+|+-+...+.....+ .+.-|..+++++++
T Consensus 443 ~qG~RPVTLVGFSLGARvIf~CL~~Lakkke~~iIEnViL~GaP 486 (633)
T KOG2385|consen 443 SQGNRPVTLVGFSLGARVIFECLLELAKKKEVGIIENVILFGAP 486 (633)
T ss_pred ccCCCceeEeeeccchHHHHHHHHHHhhcccccceeeeeeccCC
Confidence 3477899999999999998877653322 23244566666554
No 265
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=61.06 E-value=1.3e+02 Score=27.18 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=61.6
Q ss_pred CeEEEEcCCCCC-hhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC-C------------------------CCHHHHH
Q 045335 70 PTAVLLHGILGS-RKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG-L------------------------TTVASTA 123 (339)
Q Consensus 70 ~~vv~lHG~~~~-~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~-~------------------------~~~~~~a 123 (339)
|+|+++ |-.++ ...+..+.+.+.+. |.+++.+|.-=.|..... + ..++.++
T Consensus 2 ~tI~ii-gT~DTK~~E~~yl~~~i~~~--G~~v~~iDvg~~~~~~~~~di~~~eVa~~~g~~~~~~~~~~dRg~ai~~M~ 78 (403)
T PF06792_consen 2 KTIAII-GTLDTKGEELLYLRDQIEAQ--GVEVLLIDVGTLGEPSFPPDISREEVARAAGDSIEAVRSSGDRGEAIEAMA 78 (403)
T ss_pred CEEEEE-EccCCCHHHHHHHHHHHHHC--CCcEEEEEcCCCCCCCCCCCcCHHHHHHhcCCChHHhhccCCHHHHHHHHH
Confidence 345555 44454 46777777777775 899999997555533211 1 1234455
Q ss_pred HHHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEE
Q 045335 124 LDVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVL 170 (339)
Q Consensus 124 ~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l 170 (339)
+-+..++..+ .+.-++-+|-|.|..++.......|- .+-|+++-
T Consensus 79 ~ga~~~v~~l~~~g~i~Gvi~~GGs~GT~lat~aMr~LPi---G~PKlmVS 126 (403)
T PF06792_consen 79 RGAARFVSDLYDEGKIDGVIGIGGSGGTALATAAMRALPI---GFPKLMVS 126 (403)
T ss_pred HHHHHHHHHHHhcCCccEEEEecCCccHHHHHHHHHhCCC---CCCeEEEE
Confidence 5555555555 34567789999999999999998887 44466543
No 266
>COG0218 Predicted GTPase [General function prediction only]
Probab=60.63 E-value=13 Score=29.68 Aligned_cols=31 Identities=6% Similarity=-0.291 Sum_probs=20.1
Q ss_pred EEEEeeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 045335 101 TCDVMVIPHQSRKGGLTTVASTALDVLKLVA 131 (339)
Q Consensus 101 vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~ 131 (339)
...+|+||||....+..--+.+.+.+.++++
T Consensus 72 ~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~ 102 (200)
T COG0218 72 LRLVDLPGYGYAKVPKEVKEKWKKLIEEYLE 102 (200)
T ss_pred EEEEeCCCcccccCCHHHHHHHHHHHHHHHh
Confidence 6689999999886555444445555555554
No 267
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=59.70 E-value=27 Score=28.00 Aligned_cols=63 Identities=13% Similarity=0.067 Sum_probs=37.1
Q ss_pred CCCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 68 DPPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
..+|++++||..+.. ..=..+...|.+. |..+...-.||.|..-.......++.+.+.++++.
T Consensus 143 ~~~P~li~hG~~D~~Vp~~~s~~~~~~L~~~--g~~~~~~~~p~~gH~~~~~~~~~~~~~~~~~f~~~ 208 (213)
T PF00326_consen 143 IKPPVLIIHGENDPRVPPSQSLRLYNALRKA--GKPVELLIFPGEGHGFGNPENRRDWYERILDFFDK 208 (213)
T ss_dssp GGSEEEEEEETTBSSSTTHHHHHHHHHHHHT--TSSEEEEEETT-SSSTTSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEccCCCCccCHHHHHHHHHHHHhc--CCCEEEEEcCcCCCCCCCchhHHHHHHHHHHHHHH
Confidence 368999999987653 3335667778776 55666666665554321222233555556665553
No 268
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=59.70 E-value=15 Score=29.83 Aligned_cols=33 Identities=27% Similarity=0.362 Sum_probs=25.7
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.+.+.++..-.++|.|.|+.+|..+|...+
T Consensus 16 vl~aL~e~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 16 VLKALAEAGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 444555667766689999999999999998664
No 269
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=59.23 E-value=63 Score=23.06 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=49.7
Q ss_pred EEEEcCCCCChhhHHHHHHHHHHh-CCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHH
Q 045335 72 AVLLHGILGSRKNWGTFARRLARA-YPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 72 vv~lHG~~~~~~~~~~~~~~L~~~-~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia 150 (339)
||.-|| .-+......+..+... . -.+.++++. +..+++++.+.+.+.++.++...-+|+=-.++|...
T Consensus 3 ii~sHG--~~A~g~~~~~~~i~G~~~--~~i~~~~~~-------~~~~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 3 IIASHG--SLAEGLLESAEMILGEDQ--DNIEAVDLY-------PDESIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp EEEEET--THHHHHHHHHHHHHTSTC--SSEEEEEET-------TTSCHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred EEEECc--HHHHHHHHHHHHHcCCCc--ccEEEEECc-------CCCCHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 677898 4455556666666554 2 267788876 668999999999999998875554555555555554
Q ss_pred HHHHHH
Q 045335 151 LSMVEQ 156 (339)
Q Consensus 151 ~~~a~~ 156 (339)
...+.+
T Consensus 72 ~n~a~~ 77 (116)
T PF03610_consen 72 FNEAAR 77 (116)
T ss_dssp HHHHHH
T ss_pred chHHHH
Confidence 444443
No 270
>PLN02748 tRNA dimethylallyltransferase
Probab=57.06 E-value=95 Score=28.70 Aligned_cols=77 Identities=17% Similarity=0.140 Sum_probs=50.7
Q ss_pred CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEee----CCCC--CC-------------------CCCCCCH
Q 045335 65 SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMV----IPHQ--SR-------------------KGGLTTV 119 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~----~G~G--~S-------------------~~~~~~~ 119 (339)
..+.++.+|+|-|-.+++.+ .+.-.|+..+ +..||..|- +|.- .. ....|+.
T Consensus 17 ~~~~~~~~i~i~GptgsGKs--~la~~la~~~-~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv 93 (468)
T PLN02748 17 KQKGKAKVVVVMGPTGSGKS--KLAVDLASHF-PVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTA 93 (468)
T ss_pred ccCCCCCEEEEECCCCCCHH--HHHHHHHHhc-CeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcH
Confidence 34456678999998887765 3455778877 568888882 3331 11 1124899
Q ss_pred HHHHHHHHHHHHHcC-C-CceEEEEEc
Q 045335 120 ASTALDVLKLVAQLR-I-TPRVLVGHS 144 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~-~-~~~~lvGhS 144 (339)
.++.++....|+.+. - +..+|||-|
T Consensus 94 ~~F~~~A~~~I~~I~~rgk~PIlVGGT 120 (468)
T PLN02748 94 KDFRDHAVPLIEEILSRNGLPVIVGGT 120 (468)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEcCh
Confidence 999999999888762 2 345677654
No 271
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=56.95 E-value=19 Score=28.02 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=24.2
Q ss_pred HHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 128 KLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 128 ~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+.+++.++..-.++|-|.|+.+|..++..++.
T Consensus 20 ~~L~e~g~~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 20 RALEEEGIEIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred HHHHHCCCCeeEEEEeCHHHHHHHHHHcCCCH
Confidence 34455566656889999999999999876543
No 272
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=56.66 E-value=70 Score=25.88 Aligned_cols=36 Identities=8% Similarity=0.149 Sum_probs=24.9
Q ss_pred CCeEEEEcCCCCChhh--H-HHHHHHHHHhCCCceEEEEee
Q 045335 69 PPTAVLLHGILGSRKN--W-GTFARRLARAYPTWQTCDVMV 106 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~--~-~~~~~~L~~~~~g~~vi~~D~ 106 (339)
+++|.||+-.+.+.+. | ......|.+. |..+..+++
T Consensus 32 ~~~i~FIPtAs~~~~~~~Yv~k~~~~l~~l--g~~v~~L~l 70 (224)
T COG3340 32 RKTIAFIPTASVDSEDDFYVEKVRNALAKL--GLEVSELHL 70 (224)
T ss_pred CceEEEEecCccccchHHHHHHHHHHHHHc--CCeeeeeec
Confidence 6789999988776643 3 4455666666 777777765
No 273
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=55.07 E-value=60 Score=31.29 Aligned_cols=62 Identities=13% Similarity=0.050 Sum_probs=38.1
Q ss_pred CCCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHH
Q 045335 68 DPPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVA 131 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~ 131 (339)
-+.|+++|||..... .+-..+...|... |..|-..=+|+-|.+-..+.........+.++++
T Consensus 550 i~~P~LliHG~~D~~v~~~q~~~~~~aL~~~--g~~~~~~~~p~e~H~~~~~~~~~~~~~~~~~~~~ 614 (620)
T COG1506 550 IKTPLLLIHGEEDDRVPIEQAEQLVDALKRK--GKPVELVVFPDEGHGFSRPENRVKVLKEILDWFK 614 (620)
T ss_pred cCCCEEEEeecCCccCChHHHHHHHHHHHHc--CceEEEEEeCCCCcCCCCchhHHHHHHHHHHHHH
Confidence 367899999998754 4556677888875 6677666666655443333333334444444443
No 274
>cd07205 Pat_PNPLA6_PNPLA7_NTE1_like Patatin-like phospholipase domain containing protein 6, protein 7, and fungal NTE1. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are included in this family. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologus to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and panc
Probab=53.58 E-value=24 Score=27.42 Aligned_cols=32 Identities=25% Similarity=0.215 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+.+.+++.++..-.++|-|.|+.+|..++...
T Consensus 18 vl~~L~~~~~~~d~i~GtSaGal~a~~~a~g~ 49 (175)
T cd07205 18 VLKALEEAGIPIDIVSGTSAGAIVGALYAAGY 49 (175)
T ss_pred HHHHHHHcCCCeeEEEEECHHHHHHHHHHcCC
Confidence 33344455666568999999999999998654
No 275
>PRK02399 hypothetical protein; Provisional
Probab=52.86 E-value=1.8e+02 Score=26.30 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=60.2
Q ss_pred CeEEEEcCCCCCh-hhHHHHHHHHHHhCCCceEEEEeeCCCCCC-CCCC------------------------CCHHHHH
Q 045335 70 PTAVLLHGILGSR-KNWGTFARRLARAYPTWQTCDVMVIPHQSR-KGGL------------------------TTVASTA 123 (339)
Q Consensus 70 ~~vv~lHG~~~~~-~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S-~~~~------------------------~~~~~~a 123 (339)
++ |++=|-.++. ..+..+.+.+.+. |.+|+.+|.-..|.. ..++ .-++.++
T Consensus 4 ~~-I~iigT~DTK~~E~~yl~~~i~~~--g~~v~~iDv~~~~~p~~~~dis~~~Va~~~g~~~~~~~~~~dRg~ai~~M~ 80 (406)
T PRK02399 4 KR-IYIAGTLDTKGEELAYVKDLIEAA--GLEVVTVDVSGLGEPPFEPDISAEEVAEAAGDGIEAVFCGGDRGSAMAAMA 80 (406)
T ss_pred CE-EEEEeccCCcHHHHHHHHHHHHHC--CCceEEEecCCCCCCCCCCCCCHHHHHHHcCCCHHHhhcCccHHHHHHHHH
Confidence 44 4455666665 5666666666665 789999998434311 1110 1234455
Q ss_pred HHHHHHHHHc----CCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEE
Q 045335 124 LDVLKLVAQL----RITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVL 170 (339)
Q Consensus 124 ~dl~~~l~~l----~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l 170 (339)
+-+..+++.| .+.-++-+|-|.|..++.......|- .+-|+++-
T Consensus 81 ~ga~~~v~~L~~~g~i~gviglGGs~GT~lat~aMr~LPi---G~PKlmVS 128 (406)
T PRK02399 81 EGAAAFVRELYERGDVAGVIGLGGSGGTALATPAMRALPI---GVPKLMVS 128 (406)
T ss_pred HHHHHHHHHHHhcCCccEEEEecCcchHHHHHHHHHhCCC---CCCeEEEE
Confidence 5566665543 45567889999999999999998887 44466543
No 276
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=51.73 E-value=1.4e+02 Score=26.91 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=52.5
Q ss_pred CeEEEEcCCCCC---hhhHHHHHHHHHHhCCCceEEEEeeCCC---CCCC-CCCCCHHHHHHHHHHHHHH---cCCCceE
Q 045335 70 PTAVLLHGILGS---RKNWGTFARRLARAYPTWQTCDVMVIPH---QSRK-GGLTTVASTALDVLKLVAQ---LRITPRV 139 (339)
Q Consensus 70 ~~vv~lHG~~~~---~~~~~~~~~~L~~~~~g~~vi~~D~~G~---G~S~-~~~~~~~~~a~dl~~~l~~---l~~~~~~ 139 (339)
.++|+++-+... .......+..|.+. |+.|+-+ .+|+ |... ....+++++.+.+...+.. +..+++.
T Consensus 113 ~plviaPamn~~m~~~p~~~~Nl~~L~~~--G~~vv~P-~~g~~ac~~~g~g~~~~~~~i~~~v~~~~~~~~~~~~~~vl 189 (390)
T TIGR00521 113 APIILAPAMNENMYNNPAVQENIKRLKDD--GYIFIEP-DSGLLACGDEGKGRLAEPETIVKAAEREFSPKEDLEGKRVL 189 (390)
T ss_pred CCEEEEeCCChhhcCCHHHHHHHHHHHHC--CcEEECC-CCcccccccccCCCCCCHHHHHHHHHHHHhhccccCCceEE
Confidence 567777764332 23446677888876 5554443 4444 3332 2346888999988888754 4445666
Q ss_pred EEEE------------------chhHHHHHHHHHHc
Q 045335 140 LVGH------------------SFGGKVVLSMVEQA 157 (339)
Q Consensus 140 lvGh------------------S~Gg~ia~~~a~~~ 157 (339)
+.|- .+|..+|..++.+.
T Consensus 190 it~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~G 225 (390)
T TIGR00521 190 ITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRG 225 (390)
T ss_pred EecCCccCCCCceeeecCCCcchHHHHHHHHHHHCC
Confidence 6665 36777777777654
No 277
>TIGR00421 ubiX_pad polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylases. In E.coli, the protein UbiX (3-octaprenyl-4-hydroxybenzoate carboxy-lyase) has been shown to be involved in the third step of ubiquinone biosynthesis. It catalyzes the reaction [3-octaprenyl-4-hydroxybenzoate = 2-octaprenylphenol + CO2]. The knockout of the homologous protein in yeast confers sensitivity to phenylacrylic acid. Members are not restricted to ubiquinone-synthesizing species. This family represents a distinct clade within the flavoprotein family of Pfam model pfam02441.
Probab=50.96 E-value=98 Score=24.36 Aligned_cols=61 Identities=16% Similarity=-0.017 Sum_probs=36.7
Q ss_pred CCeEEEEcC-CCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH-HHHHcCCC
Q 045335 69 PPTAVLLHG-ILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK-LVAQLRIT 136 (339)
Q Consensus 69 ~~~vv~lHG-~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~-~l~~l~~~ 136 (339)
+.+|++++- ++.+... ...+..|.+. |+.++-+. +|+ ...+.+++++++.+.. +++.+|++
T Consensus 112 ~~pv~i~P~~m~~~~~~-~~Nl~~L~~~--G~~ii~P~-~g~---~~~p~~~~~~~~~i~~~~l~~lg~~ 174 (181)
T TIGR00421 112 RRKLVLVPRETPLNSIH-LENMLRLSRM--GAIILPPM-PAF---YTRPKSVEDMIDFIVGRVLDQLGIE 174 (181)
T ss_pred CCCEEEEeCCCcCCHHH-HHHHHHHHHC--CCEEECCC-Ccc---cCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 345555552 2222222 4556678776 77766543 343 3346789999988766 77888864
No 278
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=50.22 E-value=1.7e+02 Score=25.26 Aligned_cols=108 Identities=13% Similarity=0.097 Sum_probs=61.6
Q ss_pred eEEeeeCeeEEEeeccCC--CCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC--------------
Q 045335 47 AYDLIQGTLVRWSSMMDK--SIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ-------------- 110 (339)
Q Consensus 47 ~~~~~~g~~l~~~~~g~~--~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G-------------- 110 (339)
.|....+...||+..++. .+.++++=.|+-|.+... ...-+...|.+++|..+++++|.-|..
T Consensus 144 Qf~NpaN~~aH~~tT~~EI~~~~~g~~d~fVagvGTGG-TitGvar~Lk~~~p~i~iv~vdP~~S~~~~~G~g~~~i~GI 222 (300)
T COG0031 144 QFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGG-TITGVARYLKERNPNVRIVAVDPEGSVLLSGGEGPHKIEGI 222 (300)
T ss_pred hcCCCccHHHHHhhhHHHHHHHhCCCCCEEEEeCCcch-hHHHHHHHHHhhCCCcEEEEECCCCCcccCCCCCCcccCCC
Confidence 344445555555444431 112233445555554433 446678899999888999999988521
Q ss_pred -CCCCC-C-----------CCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHH--HHHHHHccC
Q 045335 111 -SRKGG-L-----------TTVASTALDVLKLVAQLRITPRVLVGHSFGGKVV--LSMVEQAAK 159 (339)
Q Consensus 111 -~S~~~-~-----------~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia--~~~a~~~p~ 159 (339)
.+.-+ . .+-++-.+...++.+..+ .++|-|-|+.++ +.+|.+.+.
T Consensus 223 G~~~ip~~~~~~~iD~v~~V~d~~A~~~~r~La~~eG----ilvG~SsGA~~~aa~~~a~~~~~ 282 (300)
T COG0031 223 GAGFVPENLDLDLIDEVIRVSDEEAIATARRLAREEG----LLVGISSGAALAAALKLAKELPA 282 (300)
T ss_pred CCCcCCcccccccCceEEEECHHHHHHHHHHHHHHhC----eeecccHHHHHHHHHHHHHhcCC
Confidence 11111 0 123333444555555444 799999999884 455666653
No 279
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=50.22 E-value=1.3e+02 Score=23.83 Aligned_cols=62 Identities=10% Similarity=0.122 Sum_probs=44.2
Q ss_pred CCCeEEEEcCCCCChhhH--HHHHHHHHHhCCCceEEEEee--CCCCCCCCCCCCHHHHHHHHHHHHH
Q 045335 68 DPPTAVLLHGILGSRKNW--GTFARRLARAYPTWQTCDVMV--IPHQSRKGGLTTVASTALDVLKLVA 131 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~--~~~~~~L~~~~~g~~vi~~D~--~G~G~S~~~~~~~~~~a~dl~~~l~ 131 (339)
.++.+|++-|+.++..+= ..+...|.+. |++++..|- .-||.+..-.+|-++-.+.+..+.+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~--G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvae 86 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAK--GYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAE 86 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHc--CCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHH
Confidence 467899999999887432 4455677776 899999983 2366666666777777777665543
No 280
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=49.02 E-value=21 Score=32.44 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=27.2
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
-+.+.+.+.++.+-+++|-|.|+.+|..+|...++
T Consensus 90 GVLkaL~E~gl~p~vIsGTSaGAivAal~as~~~e 124 (421)
T cd07230 90 GVLKALFEANLLPRIISGSSAGSIVAAILCTHTDE 124 (421)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCCHH
Confidence 34455555677777899999999999999986655
No 281
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=48.05 E-value=2e+02 Score=26.10 Aligned_cols=72 Identities=3% Similarity=-0.094 Sum_probs=42.9
Q ss_pred CCeEEEEcCCCCC---hhhHHHHHHHHHHhCCCceEEEEeeCCC---CCCCC-CCCCHHHHHHHHHHHHHH--cCCCceE
Q 045335 69 PPTAVLLHGILGS---RKNWGTFARRLARAYPTWQTCDVMVIPH---QSRKG-GLTTVASTALDVLKLVAQ--LRITPRV 139 (339)
Q Consensus 69 ~~~vv~lHG~~~~---~~~~~~~~~~L~~~~~g~~vi~~D~~G~---G~S~~-~~~~~~~~a~dl~~~l~~--l~~~~~~ 139 (339)
+.+||+++.+... .......+..|.+. |+.|+-+. +|+ |.... .-.+.+++.+.+...+.. +..+++.
T Consensus 116 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~--G~~ii~P~-~g~la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vl 192 (399)
T PRK05579 116 TAPVLVAPAMNTQMWENPATQRNLATLRSR--GVEIIGPA-SGRLACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVL 192 (399)
T ss_pred CCCEEEEeCCChhHcCCHHHHHHHHHHHHC--CCEEECCC-CccccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEE
Confidence 4567777755322 22345667788876 77766443 454 33322 236888888888887754 3434566
Q ss_pred EEEE
Q 045335 140 LVGH 143 (339)
Q Consensus 140 lvGh 143 (339)
+.|-
T Consensus 193 ITgG 196 (399)
T PRK05579 193 ITAG 196 (399)
T ss_pred EeCC
Confidence 6665
No 282
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=47.29 E-value=82 Score=24.35 Aligned_cols=73 Identities=22% Similarity=0.200 Sum_probs=42.0
Q ss_pred EEEcCCCCChhhHHHHHHHHHHhC----CCceEEEEeeC-CCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 73 VLLHGILGSRKNWGTFARRLARAY----PTWQTCDVMVI-PHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 73 v~lHG~~~~~~~~~~~~~~L~~~~----~g~~vi~~D~~-G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
|++-|.|+|...-.+++..|..+| |++..+++..- .+..+-..+|.++.+ ....+++++..-=+|+|.|--|
T Consensus 44 vl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~NDy~yd~v---FsRqveA~g~~GDvLigISTSG 120 (176)
T COG0279 44 VLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIANDYGYDEV---FSRQVEALGQPGDVLIGISTSG 120 (176)
T ss_pred EEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhhccccHHHH---HHHHHHhcCCCCCEEEEEeCCC
Confidence 445578888777777777777665 34444444311 011111234555543 3445577776667889988877
Q ss_pred H
Q 045335 148 K 148 (339)
Q Consensus 148 ~ 148 (339)
.
T Consensus 121 N 121 (176)
T COG0279 121 N 121 (176)
T ss_pred C
Confidence 4
No 283
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=46.49 E-value=34 Score=28.71 Aligned_cols=34 Identities=21% Similarity=0.186 Sum_probs=25.1
Q ss_pred HHHHHHHcCCC-ceEEEEEchhHHHHHHHHHHccC
Q 045335 126 VLKLVAQLRIT-PRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 126 l~~~l~~l~~~-~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+.+.+.+.++. .-.++|-|.|+.++..+++..+.
T Consensus 16 vl~al~e~~~~~fd~i~GtSaGAi~a~~~~~g~~~ 50 (266)
T cd07208 16 VLDAFLEAGIRPFDLVIGVSAGALNAASYLSGQRG 50 (266)
T ss_pred HHHHHHHcCCCCCCEEEEECHHHHhHHHHHhCCcc
Confidence 34444455665 44889999999999999987655
No 284
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=46.34 E-value=34 Score=28.17 Aligned_cols=34 Identities=21% Similarity=0.240 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCC--ceEEEEEchhHHHHHHHHHHcc
Q 045335 125 DVLKLVAQLRIT--PRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 125 dl~~~l~~l~~~--~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
-+.+.+.+.++. ...++|-|.|+.++..++...+
T Consensus 16 GVl~~L~e~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 16 GVLSLLIEAGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHHHcCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 344555556665 3489999999999999998653
No 285
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=46.20 E-value=1.5e+02 Score=23.61 Aligned_cols=74 Identities=9% Similarity=-0.017 Sum_probs=46.1
Q ss_pred HHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCce
Q 045335 87 TFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVR 166 (339)
Q Consensus 87 ~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~ 166 (339)
..++.+.++ ++.++.+|-+|.. ..-.+..+.+.++++......++||=-+..+.-.+..+..+-+.+ .+.+
T Consensus 74 ~~l~~~~~~--~~D~vlIDT~Gr~------~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~-~~~~ 144 (196)
T PF00448_consen 74 EALEKFRKK--GYDLVLIDTAGRS------PRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAF-GIDG 144 (196)
T ss_dssp HHHHHHHHT--TSSEEEEEE-SSS------STHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHS-STCE
T ss_pred HHHHHHhhc--CCCEEEEecCCcc------hhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcc-cCce
Confidence 344445444 5699999998765 334566777777888776667777766666666665555443322 4556
Q ss_pred EEE
Q 045335 167 VWV 169 (339)
Q Consensus 167 lv~ 169 (339)
+|+
T Consensus 145 lIl 147 (196)
T PF00448_consen 145 LIL 147 (196)
T ss_dssp EEE
T ss_pred EEE
Confidence 665
No 286
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=45.92 E-value=61 Score=24.66 Aligned_cols=49 Identities=10% Similarity=-0.115 Sum_probs=34.4
Q ss_pred CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCc-eEEEEEchhHHHHHHHH
Q 045335 98 TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITP-RVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~-~~lvGhS~Gg~ia~~~a 154 (339)
|-.|++.|.+| ...+-+++|+.+..+-+ .| +. ..+||-|.|=--++.-.
T Consensus 67 ~~~vi~Ld~~G------k~~sSe~fA~~l~~~~~-~G-~~i~f~IGG~~Gl~~~~~~~ 116 (155)
T COG1576 67 GSYVVLLDIRG------KALSSEEFADFLERLRD-DG-RDISFLIGGADGLSEAVKAR 116 (155)
T ss_pred CCeEEEEecCC------CcCChHHHHHHHHHHHh-cC-CeEEEEEeCcccCCHHHHHH
Confidence 45899999985 45777888888876654 34 44 46789999955555443
No 287
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=45.77 E-value=54 Score=28.16 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=17.7
Q ss_pred CCCCCCeEEEEcCCCCChhhH
Q 045335 65 SIPDPPTAVLLHGILGSRKNW 85 (339)
Q Consensus 65 ~~~~~~~vv~lHG~~~~~~~~ 85 (339)
..+.+|.++=+||+.+++..|
T Consensus 105 ~~p~KPLvLSfHG~tGTGKN~ 125 (344)
T KOG2170|consen 105 PNPRKPLVLSFHGWTGTGKNY 125 (344)
T ss_pred CCCCCCeEEEecCCCCCchhH
Confidence 346789999999999999876
No 288
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=45.04 E-value=27 Score=31.23 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=27.0
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
+.+.+...++.+-++.|-|.|+.+|..+|..-++
T Consensus 101 v~kaL~e~gl~p~~i~GtS~Gaivaa~~a~~~~~ 134 (391)
T cd07229 101 VVKALWLRGLLPRIITGTATGALIAALVGVHTDE 134 (391)
T ss_pred HHHHHHHcCCCCceEEEecHHHHHHHHHHcCCHH
Confidence 4455566677787899999999999999985544
No 289
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=43.97 E-value=30 Score=29.93 Aligned_cols=33 Identities=24% Similarity=0.492 Sum_probs=25.3
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
-+.+.+.+.++.+-++.|-|.|+.+|..++...
T Consensus 85 GVlkaL~e~gl~p~~i~GsSaGAivaa~~~~~t 117 (323)
T cd07231 85 GVVRTLVEHQLLPRVIAGSSVGSIVCAIIATRT 117 (323)
T ss_pred HHHHHHHHcCCCCCEEEEECHHHHHHHHHHcCC
Confidence 344445556777778999999999999998743
No 290
>PF06289 FlbD: Flagellar protein (FlbD); InterPro: IPR009384 This family consists of several bacterial FlbD flagellar proteins. The exact function of this family is unknown [].
Probab=43.60 E-value=43 Score=20.87 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=25.9
Q ss_pred CCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 305 GGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 305 ~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
.|+..+... ++-+++-.|.++++.+.|.+|-++
T Consensus 25 ~PDTvItL~-~G~k~vV~Es~~eVi~ki~~y~~~ 57 (60)
T PF06289_consen 25 TPDTVITLT-NGKKYVVKESVEEVIEKIIEYRRK 57 (60)
T ss_pred cCCeEEEEe-CCCEEEEECCHHHHHHHHHHHHHh
Confidence 488555555 547788889999999999999765
No 291
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=43.39 E-value=72 Score=25.13 Aligned_cols=54 Identities=13% Similarity=0.251 Sum_probs=40.0
Q ss_pred EEeeeCeeEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC
Q 045335 48 YDLIQGTLVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ 110 (339)
Q Consensus 48 ~~~~~g~~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G 110 (339)
|...+|..+....+ ..|+|.-.|+.......+.+..+.++| |+.|+.+.+-|.+
T Consensus 58 f~l~dG~~v~lsd~--------~lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~ 111 (181)
T PRK13728 58 FRLSNGRQVNLADW--------KVVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQG 111 (181)
T ss_pred cCCCCCCEeehhHc--------eEEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCC
Confidence 44557776555433 267777777777788888899999998 8999999876544
No 292
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=43.15 E-value=40 Score=29.26 Aligned_cols=19 Identities=26% Similarity=0.497 Sum_probs=16.5
Q ss_pred EEEEEchhHHHHHHHHHHc
Q 045335 139 VLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~~~ 157 (339)
.+.|-|.||.+|..+|..+
T Consensus 35 ~i~GTStGgiIA~~la~g~ 53 (312)
T cd07212 35 WIAGTSTGGILALALLHGK 53 (312)
T ss_pred EEEeeChHHHHHHHHHcCC
Confidence 6789999999999998744
No 293
>PRK04148 hypothetical protein; Provisional
Probab=43.14 E-value=59 Score=24.13 Aligned_cols=47 Identities=21% Similarity=0.091 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 120 ASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 120 ~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+++++.+.+.+......++..||-.+|..+|..++... . .++.+|..
T Consensus 2 ~~i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G-~------~ViaIDi~ 48 (134)
T PRK04148 2 DTIAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESG-F------DVIVIDIN 48 (134)
T ss_pred hHHHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCC-C------EEEEEECC
Confidence 34455555444333335699999999988998888542 1 56677754
No 294
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=43.03 E-value=1.6e+02 Score=22.88 Aligned_cols=70 Identities=17% Similarity=0.102 Sum_probs=43.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
+..|.|+=| +...-......|.+.|||.+++....+-+ -++..+++.+.|+..+ ..+++||-...-.
T Consensus 48 ~~~ifllG~---~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---------~~~~~~~i~~~I~~~~-pdiv~vglG~PkQ 114 (172)
T PF03808_consen 48 GKRIFLLGG---SEEVLEKAAANLRRRYPGLRIVGYHHGYF---------DEEEEEAIINRINASG-PDIVFVGLGAPKQ 114 (172)
T ss_pred CCeEEEEeC---CHHHHHHHHHHHHHHCCCeEEEEecCCCC---------ChhhHHHHHHHHHHcC-CCEEEEECCCCHH
Confidence 456777733 34555677889999999888887665423 2334455555666655 4577777666644
Q ss_pred HHH
Q 045335 149 VVL 151 (339)
Q Consensus 149 ia~ 151 (339)
--+
T Consensus 115 E~~ 117 (172)
T PF03808_consen 115 ERW 117 (172)
T ss_pred HHH
Confidence 433
No 295
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=43.00 E-value=33 Score=21.43 Aligned_cols=33 Identities=3% Similarity=0.072 Sum_probs=28.1
Q ss_pred CCCeeEEEecCCCccccccChhHHHHHHHHhhhc
Q 045335 305 GGGVEMHVLEDAGHWVHADNPDGLFRILTSSFEG 338 (339)
Q Consensus 305 ~~~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~~ 338 (339)
+|+..+..+.| --++.-|.-+++.+.|.+|-++
T Consensus 25 ~PDttItLinG-kkyvVkEsveEVi~kI~~y~rk 57 (67)
T COG1582 25 FPDTTITLING-KKYVVKESVEEVINKIIEYRRK 57 (67)
T ss_pred cCCcEEEEEcC-cEEEEcccHHHHHHHHHHHHHH
Confidence 69999988865 7788889999999999998765
No 296
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=42.82 E-value=91 Score=25.74 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=24.5
Q ss_pred CCeEEEEcCCCCC--hhhH-HHHHHHHHHhCCCceEEEEeeC
Q 045335 69 PPTAVLLHGILGS--RKNW-GTFARRLARAYPTWQTCDVMVI 107 (339)
Q Consensus 69 ~~~vv~lHG~~~~--~~~~-~~~~~~L~~~~~g~~vi~~D~~ 107 (339)
+|.|+||+=.... ...| ..+...+.+. |+.+..++..
T Consensus 31 ~~~v~fIPtAs~~~~~~~y~~~~~~af~~l--G~~v~~l~~~ 70 (233)
T PRK05282 31 RRKAVFIPYAGVTQSWDDYTAKVAEALAPL--GIEVTGIHRV 70 (233)
T ss_pred CCeEEEECCCCCCCCHHHHHHHHHHHHHHC--CCEEEEeccc
Confidence 6889999987733 4444 3344555554 8888888765
No 297
>PF11713 Peptidase_C80: Peptidase C80 family; InterPro: IPR020974 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry identifies a domain that functions as a cysteine peptidase that belongs to MEROPS peptidase family C80 (RTX self-cleaving toxin, clan CD). This domain is found in bacterial toxins that self-process by a cysteine peptidase mechanism. These include Vibrio cholerae RTX toxin [], and Clostridium difficile toxins A and B []. Some pathogenic bacteria produce unrelated toxins that also require activation and processing, the processing often being autolytic as it is in anthrax lethal factor, tentoxilysin (the tetanus neurotoxin) and bontoxilysin (the botulinum neurotoxin), all of which are metallopeptidases.; PDB: 3GCD_C 3EEB_B 3FZY_A 3PEE_A 3PA8_B 3HO6_A.
Probab=41.98 E-value=25 Score=26.92 Aligned_cols=47 Identities=15% Similarity=0.075 Sum_probs=28.5
Q ss_pred EEEeeCCCCCCCC-----CCCCHHHHHHHH----HHHHHHcC----CCceEEEEEchhHH
Q 045335 102 CDVMVIPHQSRKG-----GLTTVASTALDV----LKLVAQLR----ITPRVLVGHSFGGK 148 (339)
Q Consensus 102 i~~D~~G~G~S~~-----~~~~~~~~a~dl----~~~l~~l~----~~~~~lvGhS~Gg~ 148 (339)
+-+-+-|||.... ..++.+++|.-| ..+-+..+ .+++.|+|.|++..
T Consensus 57 ~rw~lVGHG~~~~~~~~l~g~~a~~La~~l~~~~~~l~~~~~~~~~P~~IsLvGC~l~~~ 116 (157)
T PF11713_consen 57 VRWQLVGHGRDEFNNQTLAGYSADELANKLIKFKQQLKQKYGINISPKKISLVGCSLADN 116 (157)
T ss_dssp EEEEEE--EESSTSSSEETTEEHHHHHHHHHHHHHHHHHHHTTT--ESEEEEESSS-S-T
T ss_pred ceEEEEEeCCCcCCCceeCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEEecccCC
Confidence 3456678987621 237888888888 44444442 35789999998877
No 298
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.96 E-value=76 Score=25.64 Aligned_cols=83 Identities=11% Similarity=0.130 Sum_probs=42.7
Q ss_pred CCCeEEEEcCCCCChhhH-HHHHHHHHHhCCCceEEEEeeCCCCCCCC-----------CCCCHHHHHHH-----HHHHH
Q 045335 68 DPPTAVLLHGILGSRKNW-GTFARRLARAYPTWQTCDVMVIPHQSRKG-----------GLTTVASTALD-----VLKLV 130 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~-~~~~~~L~~~~~g~~vi~~D~~G~G~S~~-----------~~~~~~~~a~d-----l~~~l 130 (339)
..+.|++|+-.......| ..+...|.+.. |+++..++... ..... +.-+...+.+. +.+++
T Consensus 30 ~~~~i~~IptAs~~~~~~~~~~~~a~~~l~-G~~~~~~~~~~-~~~~~~~l~~ad~I~l~GG~~~~~~~~l~~~~l~~~l 107 (212)
T cd03146 30 ARPKVLFVPTASGDRDEYTARFYAAFESLR-GVEVSHLHLFD-TEDPLDALLEADVIYVGGGNTFNLLAQWREHGLDAIL 107 (212)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhhcc-CcEEEEEeccC-cccHHHHHhcCCEEEECCchHHHHHHHHHHcCHHHHH
Confidence 467899998777754443 33334444431 45777776543 10000 00112222221 23333
Q ss_pred HHcCCCceEEEEEchhHHHHHH
Q 045335 131 AQLRITPRVLVGHSFGGKVVLS 152 (339)
Q Consensus 131 ~~l~~~~~~lvGhS~Gg~ia~~ 152 (339)
+..-.+...++|-|.|+.+...
T Consensus 108 ~~~~~~g~~i~G~SAGa~i~~~ 129 (212)
T cd03146 108 KAALERGVVYIGWSAGSNCWFP 129 (212)
T ss_pred HHHHHCCCEEEEECHhHHhhCC
Confidence 3322245789999999888766
No 299
>PHA02114 hypothetical protein
Probab=41.96 E-value=42 Score=23.08 Aligned_cols=34 Identities=26% Similarity=0.241 Sum_probs=29.0
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEe
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVM 105 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D 105 (339)
-+||+=-.+.++..-|-.++..|.+. ||+|++-.
T Consensus 83 gtivldvn~amsr~pwi~v~s~le~~--g~~vvatq 116 (127)
T PHA02114 83 GTIVLDVNYAMSRAPWIKVISRLEEA--GFNVVATQ 116 (127)
T ss_pred CeEEEEehhhhccCcHHHHHHHHHhc--Cceeeehh
Confidence 46888888889999999999999887 99999853
No 300
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=41.63 E-value=32 Score=31.14 Aligned_cols=35 Identities=23% Similarity=0.344 Sum_probs=26.7
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
-+.+.+.+.++.+-+++|-|.|+.+|..+|..-++
T Consensus 84 GVlkaL~e~gllp~iI~GtSAGAivaalla~~t~~ 118 (407)
T cd07232 84 GVVKALLDADLLPNVISGTSGGSLVAALLCTRTDE 118 (407)
T ss_pred HHHHHHHhCCCCCCEEEEECHHHHHHHHHHcCCHH
Confidence 34444455577777899999999999999986555
No 301
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=41.11 E-value=1.5e+02 Score=23.42 Aligned_cols=63 Identities=10% Similarity=-0.103 Sum_probs=37.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH-HHHHcCCCc
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK-LVAQLRITP 137 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~-~l~~l~~~~ 137 (339)
+.++++++--+-....-...+..|.+. |+.|+-+. +|+- ..+.+++++++.+.. +++.++++.
T Consensus 115 ~~pvii~P~~M~~~p~~~~Nl~~L~~~--G~~vi~P~-~g~~---a~p~~~~~~~~~~v~~~~~~l~~~~ 178 (185)
T PRK06029 115 RRRLVLCVRETPLHLGHLRNMTKLAEM--GAIIMPPV-PAFY---HRPQTLEDMVDQTVGRVLDLFGIEH 178 (185)
T ss_pred CCCEEEEeccccCCHHHHHHHHHHHHC--cCEEECCC-cccc---cCCCCHHHHHHHHHHHHHHhcCCCC
Confidence 345666662211112224566778776 66665544 3432 245799999998765 889988753
No 302
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=41.02 E-value=2.2e+02 Score=25.38 Aligned_cols=37 Identities=11% Similarity=0.069 Sum_probs=28.8
Q ss_pred EEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC
Q 045335 72 AVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR 112 (339)
Q Consensus 72 vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S 112 (339)
|||+|...- ..|+.+++.|.+. |++|..+-..+.+..
T Consensus 2 il~~~~~~p--~~~~~la~~L~~~--G~~v~~~~~~~~~~~ 38 (396)
T cd03818 2 ILFVHQNFP--GQFRHLAPALAAQ--GHEVVFLTEPNAAPP 38 (396)
T ss_pred EEEECCCCc--hhHHHHHHHHHHC--CCEEEEEecCCCCCC
Confidence 789987654 3588999999998 899988877776543
No 303
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=40.45 E-value=96 Score=27.10 Aligned_cols=100 Identities=16% Similarity=0.187 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC-----CCCC-------------CCCC----HHHHH--
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ-----SRKG-------------GLTT----VASTA-- 123 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G-----~S~~-------------~~~~----~~~~a-- 123 (339)
.+++=+|+||.|..... ..+-.+|.++.+...|+..|.-+.- .-.+ +... +++++
T Consensus 210 ~g~vDi~V~gaGTGGTi-tgvGRylke~~~~~kVv~vdp~~S~~~~~~~~g~~~~~I~GIGyg~~p~~ld~~~vd~~~~~ 288 (362)
T KOG1252|consen 210 DGKVDIFVAGAGTGGTI-TGVGRYLKEQNPNIKVVGVDPQESIVLSGGKPGPTFHKIQGIGYGFIPTTLDTKLVDEVLKV 288 (362)
T ss_pred cCCCCEEEeccCCCcee-echhHHHHHhCCCCEEEEeCCCcceeccCCCCCCCccceeccccCcCccccchHHHHHHHHh
Confidence 56777899988765533 4456677777677799998865431 1011 1111 11111
Q ss_pred --HHHHHHHHHcCCCceEEEEEchhHHHHHHH-HHHccCCCCCCceEEEEe
Q 045335 124 --LDVLKLVAQLRITPRVLVGHSFGGKVVLSM-VEQAAKPLARPVRVWVLD 171 (339)
Q Consensus 124 --~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~-a~~~p~~~~~v~~lv~l~ 171 (339)
++.......+..+.=.++|-|-|+.++..+ .++.|+ .-.+++++-
T Consensus 289 ~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~a~~~e---n~~kliV~~ 336 (362)
T KOG1252|consen 289 SSDEAIEMARRLALEEGLLVGISSGANVAAALKLAKRPE---NAGKLIVVT 336 (362)
T ss_pred CCHHHHHHHHHHHHhhCeeecccchHHHHHHHHHHhccc---cCCcEEEEE
Confidence 122222233444556899999998875443 234455 333555543
No 304
>TIGR03607 patatin-related protein. This bacterial protein family contains an N-terminal patatin domain, where patatins are plant storage proteins capable of phospholipase activity (see pfam01734). Regions of strong sequence conservation are separated by regions of significant sequence and length variability. Members of the family are distributed sporadically among bacteria. The function is unknown.
Probab=40.32 E-value=92 Score=30.64 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHH---HcCCCceEEEEEchhHHHHHHHHH
Q 045335 120 ASTALDVLKLVA---QLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 120 ~~~a~dl~~~l~---~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
...-.++.+.+. ..++.--+++|.|.||.++..+|.
T Consensus 47 ~~~Y~~l~~~l~~~~~~~~~~d~iaGTSAGAInaa~lA~ 85 (739)
T TIGR03607 47 EAVYGALLELLGAHLRLRVRVDVISGTSAGGINGVLLAY 85 (739)
T ss_pred hhHHHHHHHHhhhhhccCCCCceEEeeCHHHHHHHHHHc
Confidence 334444445554 334445588999999999999986
No 305
>COG1073 Hydrolases of the alpha/beta superfamily [General function prediction only]
Probab=40.29 E-value=2 Score=36.27 Aligned_cols=88 Identities=23% Similarity=0.241 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEee----------CCCCCCCC--CCCC--------HHHHHHHH
Q 045335 67 PDPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMV----------IPHQSRKG--GLTT--------VASTALDV 126 (339)
Q Consensus 67 ~~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~----------~G~G~S~~--~~~~--------~~~~a~dl 126 (339)
..-|.+++.||+++....-......++.. ++.++..+. +|++.+.. .... ......+.
T Consensus 47 ~~~p~v~~~h~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (299)
T COG1073 47 KKLPAVVFLHGFGSSKEQSLGYAVLLAEK--GYRVLAGDASLFGESGGDPRGLADSEGYAEDFSAAVLLLLSEGVLDKDY 124 (299)
T ss_pred ccCceEEeccCccccccCcchHHHHhhhc--eeEEeeeccccccccccccccccCccccccccchhheeeeccccccHHH
Confidence 35788999999999887755566677776 568777664 33332211 1111 11111111
Q ss_pred HHHHHHcCCCceEEEEEchhHHHHHHHHHHcc
Q 045335 127 LKLVAQLRITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 127 ~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
...... .++....|+++|+..+..++...+
T Consensus 125 ~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~ 154 (299)
T COG1073 125 RLLGAS--LGPRILAGLSLGGPSAGALLAWGP 154 (299)
T ss_pred HHHhhh--cCcceEEEEEeeccchHHHhhcch
Confidence 111122 267889999999999998888776
No 306
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=39.89 E-value=2.3e+02 Score=23.86 Aligned_cols=70 Identities=10% Similarity=0.106 Sum_probs=43.2
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCc-eEEEEeeCCC-CC--CCCCCCCHHHHHHHHHHHHHH-cCCCceEE-E
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTW-QTCDVMVIPH-QS--RKGGLTTVASTALDVLKLVAQ-LRITPRVL-V 141 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~-~vi~~D~~G~-G~--S~~~~~~~~~~a~dl~~~l~~-l~~~~~~l-v 141 (339)
.+.||++=-|...+.+.|...++.+.+. |. +++..+ +|. .. ......++..+. .+++ .+ -++.+ .
T Consensus 131 ~gkPVilk~G~~~t~~e~~~Ave~i~~~--Gn~~i~l~~-rG~s~y~~~~~~~~dl~~i~-----~lk~~~~-~pV~~ds 201 (260)
T TIGR01361 131 QGKPVLLKRGMGNTIEEWLYAAEYILSS--GNGNVILCE-RGIRTFEKATRNTLDLSAVP-----VLKKETH-LPIIVDP 201 (260)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHHc--CCCcEEEEE-CCCCCCCCCCcCCcCHHHHH-----HHHHhhC-CCEEEcC
Confidence 3678999999999999999999999876 44 555544 332 11 111122222222 2222 33 46777 7
Q ss_pred EEchh
Q 045335 142 GHSFG 146 (339)
Q Consensus 142 GhS~G 146 (339)
.||.|
T Consensus 202 ~Hs~G 206 (260)
T TIGR01361 202 SHAAG 206 (260)
T ss_pred CCCCC
Confidence 99988
No 307
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=39.63 E-value=51 Score=21.68 Aligned_cols=25 Identities=12% Similarity=0.110 Sum_probs=19.2
Q ss_pred CCCceEEEEEchhHHHHHHHHHHcc
Q 045335 134 RITPRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+++.++|-|-|=.+|.+.++.+.
T Consensus 38 GpK~VLViGaStGyGLAsRIa~aFg 62 (78)
T PF12242_consen 38 GPKKVLVIGASTGYGLASRIAAAFG 62 (78)
T ss_dssp S-SEEEEES-SSHHHHHHHHHHHHC
T ss_pred CCceEEEEecCCcccHHHHHHHHhc
Confidence 4478899999999999988887763
No 308
>PRK01581 speE spermidine synthase; Validated
Probab=39.45 E-value=2.8e+02 Score=24.79 Aligned_cols=111 Identities=9% Similarity=0.014 Sum_probs=60.0
Q ss_pred eEEEeeccCCCCCCCCeEEEEcCCCCChhhHHHHHHHHH------------HhCCCceEEEEeeCCCCCC-CC-C---CC
Q 045335 55 LVRWSSMMDKSIPDPPTAVLLHGILGSRKNWGTFARRLA------------RAYPTWQTCDVMVIPHQSR-KG-G---LT 117 (339)
Q Consensus 55 ~l~~~~~g~~~~~~~~~vv~lHG~~~~~~~~~~~~~~L~------------~~~~g~~vi~~D~~G~G~S-~~-~---~~ 117 (339)
.+.|......+.-....+++++--.++.+.|....-... ..| =++..++..+++.- +. - ..
T Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~~~~S~y--Q~I~I~et~~~~L~LDG~~Q~se~ 131 (374)
T PRK01581 54 GIQYAETKQDNQVQSENVVIVPTDSHNLDIWDEISLKEIQAGEHTNLFAEKSNY--QNINLLQVSDIRLYLDKQLQFSSV 131 (374)
T ss_pred CceeccCCccchhhccceEEeecCCCchhhhhHHHHHHHhhcccCEEEecCCCC--ceEEEEEcCCEEEEECCeeccccc
Confidence 356666555443345667778777777777765543333 122 16667777776422 11 1 11
Q ss_pred CHHHHHHHHHHH--HHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 118 TVASTALDVLKL--VAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 118 ~~~~~a~dl~~~--l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+-..|-+.+... +...+.+++.++|-..|+. +..+.++| .+..+++++-.
T Consensus 132 DE~iYHE~Lvhp~m~~h~~PkrVLIIGgGdG~t--lrelLk~~----~v~~It~VEID 183 (374)
T PRK01581 132 DEQIYHEALVHPIMSKVIDPKRVLILGGGDGLA--LREVLKYE----TVLHVDLVDLD 183 (374)
T ss_pred cHHHHHHHHHHHHHHhCCCCCEEEEECCCHHHH--HHHHHhcC----CCCeEEEEeCC
Confidence 112234444442 2334557888999776663 34445565 34467777654
No 309
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=39.38 E-value=2.4e+02 Score=24.06 Aligned_cols=57 Identities=12% Similarity=-0.065 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCce--EEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHH
Q 045335 86 GTFARRLARAYPTWQ--TCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKV 149 (339)
Q Consensus 86 ~~~~~~L~~~~~g~~--vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~i 149 (339)
...+..+.+. |+. =|.+|. |+|.+.....+++ +.+.+..+ ..+ +-..++|+|-=..+
T Consensus 166 ~~~i~~a~~~--GI~~~~IilDP-GiGF~k~~~~n~~-ll~~l~~l-~~l--g~Pilvg~SRKsfi 224 (282)
T PRK11613 166 IEQIARCEAA--GIAKEKLLLDP-GFGFGKNLSHNYQ-LLARLAEF-HHF--NLPLLVGMSRKSMI 224 (282)
T ss_pred HHHHHHHHHc--CCChhhEEEeC-CCCcCCCHHHHHH-HHHHHHHH-HhC--CCCEEEEecccHHH
Confidence 3334444443 664 678885 7776532211211 12222222 233 45688999844333
No 310
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=39.25 E-value=1.8e+02 Score=26.46 Aligned_cols=68 Identities=13% Similarity=0.054 Sum_probs=49.5
Q ss_pred HHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCc
Q 045335 86 GTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPV 165 (339)
Q Consensus 86 ~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~ 165 (339)
..++..|.+. |.+|++. ...+.++|-..+...++..+.++-+++ .-||.++..+...+|+...++.
T Consensus 75 d~vaa~l~~~--gi~v~a~----------~~~~~~~y~~~~~~~l~~~~~~p~~i~--DdGg~~~~~~~~~~~~~~~~~~ 140 (413)
T cd00401 75 DHAAAAIAAA--GIPVFAW----------KGETLEEYWWCIEQALKFPDGEPNMIL--DDGGDLTLLIHKKHPELLPGIR 140 (413)
T ss_pred HHHHHHHHhc--CceEEEE----------cCCCHHHHHHHHHHHHhccCCCCcEEE--ecchHHHHHHHhhhhhhhhccE
Confidence 5678888876 7787776 346778888888888887655665555 8899998888888887554444
Q ss_pred eE
Q 045335 166 RV 167 (339)
Q Consensus 166 ~l 167 (339)
++
T Consensus 141 G~ 142 (413)
T cd00401 141 GI 142 (413)
T ss_pred EE
Confidence 43
No 311
>PF03283 PAE: Pectinacetylesterase
Probab=39.08 E-value=1.2e+02 Score=26.94 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.6
Q ss_pred CceEEEEEchhHHHHHHHHHH
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~ 156 (339)
++++|.|.|.||.-++..+..
T Consensus 156 ~~vlltG~SAGG~g~~~~~d~ 176 (361)
T PF03283_consen 156 KQVLLTGCSAGGLGAILHADY 176 (361)
T ss_pred ceEEEeccChHHHHHHHHHHH
Confidence 678999999999998877643
No 312
>PF09994 DUF2235: Uncharacterized alpha/beta hydrolase domain (DUF2235); InterPro: IPR018712 This domain has no known function.
Probab=38.62 E-value=2.5e+02 Score=23.87 Aligned_cols=40 Identities=13% Similarity=0.163 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHH-HHcCC-CceEEEEEchhHHHHHHHHHHc
Q 045335 118 TVASTALDVLKLV-AQLRI-TPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 118 ~~~~~a~dl~~~l-~~l~~-~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
.+++-+.+...++ +.... +.+.++|.|-|+.+|-.+|..-
T Consensus 72 g~~~~I~~ay~~l~~~~~~gd~I~lfGFSRGA~~AR~~a~~i 113 (277)
T PF09994_consen 72 GIEARIRDAYRFLSKNYEPGDRIYLFGFSRGAYTARAFANMI 113 (277)
T ss_pred chHHHHHHHHHHHHhccCCcceEEEEecCccHHHHHHHHHHH
Confidence 4554444444433 44433 5789999999999999998643
No 313
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=38.57 E-value=1.4e+02 Score=25.09 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=46.4
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEee--CCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEE-EEEc
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMV--IPHQSRKGGLTTVASTALDVLKLVAQLRITPRVL-VGHS 144 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~--~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~l-vGhS 144 (339)
.++||||--|++.+.+.|..-++++.... .-+||.... |+|-.+ ..++++--+--+..-+.+| |+++ +-|+
T Consensus 151 ~~kPvLLKRg~~aTieEwL~AAEYI~s~G-N~~vILCERGIRtfe~~--TRntLDi~aV~~~kq~THL---PVivDpSH~ 224 (286)
T COG2876 151 QNKPVLLKRGLSATIEEWLNAAEYILSHG-NGNVILCERGIRTFEKA--TRNTLDISAVPILKQETHL---PVIVDPSHA 224 (286)
T ss_pred cCCCeEEecCccccHHHHHHHHHHHHhCC-CCcEEEEeccccccccc--ccceechHHHHHHHhhcCC---CEEECCCCc
Confidence 46789999999999999999999998874 235665552 333333 3455554444444333333 3333 5666
Q ss_pred hhH
Q 045335 145 FGG 147 (339)
Q Consensus 145 ~Gg 147 (339)
.|=
T Consensus 225 ~Gr 227 (286)
T COG2876 225 TGR 227 (286)
T ss_pred ccc
Confidence 664
No 314
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=38.34 E-value=53 Score=27.27 Aligned_cols=33 Identities=18% Similarity=0.171 Sum_probs=23.6
Q ss_pred HHHHHHHcCCC--c--eEEEEEchhHHHHHHHHHHcc
Q 045335 126 VLKLVAQLRIT--P--RVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 126 l~~~l~~l~~~--~--~~lvGhS~Gg~ia~~~a~~~p 158 (339)
+.+.+.+.++. + -.++|-|.|+.+|..+|...+
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 17 VASALREHAPRLLQNARRIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred HHHHHHHcCcccccCCCEEEEEcHHHHHHHHHHhCCC
Confidence 34444445543 2 389999999999999998654
No 315
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=37.40 E-value=1.2e+02 Score=23.96 Aligned_cols=60 Identities=7% Similarity=0.006 Sum_probs=38.1
Q ss_pred CCeEEEEcCCCC---ChhhHHHHHHHHHHhCCCceEEEEeeCCC---CCCC-CCCCCHHHHHHHHHHHHH
Q 045335 69 PPTAVLLHGILG---SRKNWGTFARRLARAYPTWQTCDVMVIPH---QSRK-GGLTTVASTALDVLKLVA 131 (339)
Q Consensus 69 ~~~vv~lHG~~~---~~~~~~~~~~~L~~~~~g~~vi~~D~~G~---G~S~-~~~~~~~~~a~dl~~~l~ 131 (339)
+.+||+++-+.. ....+...+..|.+. |+.|+-+. +|+ |... ....+++++++.+..++.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~~--G~~vi~p~-~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKED--GVQEIEPK-EGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHHC--CCEEECCC-CCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 566777775322 223446677888876 66665554 566 5442 345788888888887664
No 316
>PF13728 TraF: F plasmid transfer operon protein
Probab=37.25 E-value=84 Score=25.54 Aligned_cols=44 Identities=7% Similarity=-0.049 Sum_probs=35.2
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCC
Q 045335 71 TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGG 115 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~ 115 (339)
.++|.-|-+.-...+.+++..|++.| |+.|+.+++=|.+...-+
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp 167 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFP 167 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCC
Confidence 45556666666678899999999999 999999999998866433
No 317
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=36.99 E-value=43 Score=25.59 Aligned_cols=44 Identities=9% Similarity=-0.121 Sum_probs=28.6
Q ss_pred CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhH
Q 045335 98 TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGG 147 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg 147 (339)
+-.+++.|-.| ...+-+++|+.+..+...-.-+=+.+||-+.|=
T Consensus 67 ~~~~i~Ld~~G------k~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~ 110 (155)
T PF02590_consen 67 NDYVILLDERG------KQLSSEEFAKKLERWMNQGKSDIVFIIGGADGL 110 (155)
T ss_dssp TSEEEEE-TTS------EE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB-
T ss_pred CCEEEEEcCCC------ccCChHHHHHHHHHHHhcCCceEEEEEecCCCC
Confidence 34889999874 347889999999988776322335789999993
No 318
>PF08094 Toxin_24: Conotoxin TVIIA/GS family; InterPro: IPR012629 This family consists of conotoxins isolated from the venom of cone snail Conus tulipa and Conus geographus. Conotoxin TVIIA, isolated from Conus tulipa displays little sequence homology with other well-characterised pharmacological classes of peptides, but displays similarity with conotoxin GS, a peptide from Conus geographus. Both these peptides block skeletal muscle sodium channels and also share several biochemical features and represent a distinct subgroup of the four-loop conotoxins [].; GO: 0019871 sodium channel inhibitor activity, 0009405 pathogenesis, 0005576 extracellular region; PDB: 1AG7_A 1EYO_A.
Probab=36.88 E-value=20 Score=18.29 Aligned_cols=9 Identities=44% Similarity=0.386 Sum_probs=4.9
Q ss_pred ccccCcCCC
Q 045335 3 ALRVSRLDP 11 (339)
Q Consensus 3 ~~~~~~~~~ 11 (339)
++|.|+++|
T Consensus 3 sgr~srcpp 11 (33)
T PF08094_consen 3 SGRGSRCPP 11 (33)
T ss_dssp B-TTSSSSS
T ss_pred cCCCCCCCc
Confidence 456666665
No 319
>cd01819 Patatin_and_cPLA2 Patatins and Phospholipases. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates. This family also includes the catalytic domain of cytosolic phospholipase A2 (PLA2; EC 3.1.1.4) hydrolyzes the sn-2-acyl ester bond of phospholipids to release arachidonic acid. At the active site, cPLA2 contains a serine nucleophile through which the catalytic mechanism is initiated. The active site is partially covered by a solvent-accessible flexible lid. cPLA2 displays interfacial activation as it exists in both "closed lid" and "open lid" forms.
Probab=36.82 E-value=65 Score=24.47 Aligned_cols=28 Identities=25% Similarity=0.255 Sum_probs=20.4
Q ss_pred HHHHHHcCC--CceEEEEEchhHHHHHHHH
Q 045335 127 LKLVAQLRI--TPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 127 ~~~l~~l~~--~~~~lvGhS~Gg~ia~~~a 154 (339)
.+.+++.++ ..-++.|.|.|+.++..++
T Consensus 17 l~~l~~~~~~~~~~~~~G~SaGa~~~~~~~ 46 (155)
T cd01819 17 LSALAERGLLDCVTYLAGTSGGAWVAATLY 46 (155)
T ss_pred HHHHHHhCCccCCCEEEEEcHHHHHHHHHh
Confidence 333444444 4458899999999999998
No 320
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=36.81 E-value=2.5e+02 Score=24.58 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=26.0
Q ss_pred CCCHHHHHHHHHHHHHHcC-CCceEEEEEchhHHH
Q 045335 116 LTTVASTALDVLKLVAQLR-ITPRVLVGHSFGGKV 149 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l~~l~-~~~~~lvGhS~Gg~i 149 (339)
..+..++++.+.+.++... ..+++||=|+.=|.-
T Consensus 116 ~~~~~~~~~~i~~~l~~~~~~~~l~lvIHnIDg~~ 150 (326)
T PF04084_consen 116 PKSPSEQLDFIISYLESRPSPPPLYLVIHNIDGPS 150 (326)
T ss_pred cCCHHHHHHHHHHHHhccCCCCceEEEEECCCChh
Confidence 4577788888888888775 578999999886554
No 321
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=36.23 E-value=34 Score=27.02 Aligned_cols=33 Identities=18% Similarity=0.293 Sum_probs=24.1
Q ss_pred eEEEEcC---CCCChhhHHHHHHHHHHhCCCceEEEEe
Q 045335 71 TAVLLHG---ILGSRKNWGTFARRLARAYPTWQTCDVM 105 (339)
Q Consensus 71 ~vv~lHG---~~~~~~~~~~~~~~L~~~~~g~~vi~~D 105 (339)
.||++|. ...+......+++.|.++ ||+++.++
T Consensus 153 ~Iil~Hd~~~~~~t~~~l~~~i~~l~~~--Gy~~vtl~ 188 (191)
T TIGR02764 153 DIILLHASDSAKQTVKALPTIIKKLKEK--GYEFVTIS 188 (191)
T ss_pred CEEEEeCCCCcHhHHHHHHHHHHHHHHC--CCEEEEHH
Confidence 5999993 233456667788888887 89988764
No 322
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=35.72 E-value=42 Score=23.86 Aligned_cols=59 Identities=15% Similarity=0.104 Sum_probs=36.6
Q ss_pred EEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEee--CCCCCCCCCC-C--CHHHHHHHHHHHHHHc
Q 045335 72 AVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMV--IPHQSRKGGL-T--TVASTALDVLKLVAQL 133 (339)
Q Consensus 72 vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~--~G~G~S~~~~-~--~~~~~a~dl~~~l~~l 133 (339)
+|+|.|.++++.+- ++..|++.+ |+.++..|- +-.+...... . ......+.+.+.++.+
T Consensus 1 vI~I~G~~gsGKST--~a~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 64 (121)
T PF13207_consen 1 VIIISGPPGSGKST--LAKELAERL-GFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQL 64 (121)
T ss_dssp EEEEEESTTSSHHH--HHHHHHHHH-TCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHH--HHHHHHHHH-CCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhh
Confidence 68899999888663 567788877 889999998 4444332111 1 1233444455555554
No 323
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=35.69 E-value=59 Score=27.92 Aligned_cols=32 Identities=28% Similarity=0.386 Sum_probs=23.7
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHHHHc
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMVEQA 157 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~ 157 (339)
+.+.+...++.+-++.|-|.|+.+|..++...
T Consensus 87 vl~aL~e~~l~~~~i~GtSaGAi~aa~~~~~~ 118 (298)
T cd07206 87 VVKALWEQDLLPRVISGSSAGAIVAALLGTHT 118 (298)
T ss_pred HHHHHHHcCCCCCEEEEEcHHHHHHHHHHcCC
Confidence 33333445666678999999999999998754
No 324
>PF04951 Peptidase_M55: D-aminopeptidase; InterPro: IPR007035 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M55 (DppA aminopeptidase family, clan MN). The type example is Bacillus subtilis DppA, which is a binuclear zinc-dependent, D-specific aminopeptidase. The structure reveals that DppA is a new example of a self-compartmentalising protease, a family of proteolytic complexes. Proteasomes are the most extensively studied representatives of this family. The DppA enzyme is composed of identical 30 kDa subunits organised in a decamer with 52 point-group symmetry. A 20 A wide channel runs through the complex, giving access to a central chamber holding the active sites. The structure shows DppA to be a prototype of a new family of metalloaminopeptidases characterised by the SXDXEG key sequence []. The only known substrates are D-ala-D-ala and D-ala-gly-gly.; PDB: 1HI9_A.
Probab=35.47 E-value=67 Score=27.05 Aligned_cols=50 Identities=10% Similarity=-0.013 Sum_probs=30.3
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecCC--CccccccChhHHHHHHHHh
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLEDA--GHWVHADNPDGLFRILTSS 335 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~~--gH~~~~e~p~~~~~~i~~f 335 (339)
+||.++.|++- ..+.++.+.|+++.+.++.+ .+....-.|++..+.|.+=
T Consensus 148 VPV~lVsGD~~--------------l~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~i~~~ 199 (265)
T PF04951_consen 148 VPVVLVSGDDA--------------LCEEAKELLPWIVTVAVKEGIGRYAAISLHPAEACERIREA 199 (265)
T ss_dssp --EEEEEEEHH--------------HHHHHHTTSTT-EEEEEEEEEETTEEEE--HHHHHHHHHHH
T ss_pred CcEEEEeCcHH--------------HHHHHHHhCCCceEEEEecccCCCccccCCHHHHHHHHHHH
Confidence 99999999753 33334556899999888762 3344556687777776653
No 325
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=34.83 E-value=2.1e+02 Score=24.36 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=30.5
Q ss_pred HHHHHHHHHcC---CCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 124 LDVLKLVAQLR---ITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 124 ~dl~~~l~~l~---~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
+.+.+-+..+- -.+++|.|.|+|+.-+...-....+...++.+.+..++
T Consensus 94 ~aV~~~~~~lP~~~RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~Gp 145 (289)
T PF10081_consen 94 EAVYARWSTLPEDRRPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGP 145 (289)
T ss_pred HHHHHHHHhCCcccCCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCC
Confidence 33444444442 24699999999998877665555554446666665544
No 326
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=34.71 E-value=61 Score=27.02 Aligned_cols=35 Identities=0% Similarity=-0.158 Sum_probs=20.1
Q ss_pred CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 98 TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
|..+..+|.||++.+......-+...+.+..+++.
T Consensus 78 g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~ 112 (249)
T cd01853 78 GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKK 112 (249)
T ss_pred CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhc
Confidence 45888999999997743222223333334444443
No 327
>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]
Probab=34.64 E-value=1.8e+02 Score=25.79 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=36.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHH-HHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 045335 69 PPTAVLLHGILGSRKNWGTFAR-RLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRI 135 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~-~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~ 135 (339)
.+.|+.+.|.-+|+ +.. .|.++ ||.|+.+-+.-+..+.....+.++..+|...+.+.+|+
T Consensus 4 ~kV~v~mSGGVDSS-----VaA~lLk~Q--GyeViGl~m~~~~~~~~~~C~s~~d~~da~~va~~LGI 64 (356)
T COG0482 4 KKVLVGMSGGVDSS-----VAAYLLKEQ--GYEVIGLFMKNWDEDGGGGCCSEEDLRDAERVADQLGI 64 (356)
T ss_pred cEEEEEccCCHHHH-----HHHHHHHHc--CCeEEEEEEEeeccCCCCcCCchhHHHHHHHHHHHhCC
Confidence 45666666666544 333 44555 89999999987765333334455555556666666654
No 328
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=34.42 E-value=2.1e+02 Score=21.89 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=36.9
Q ss_pred CCeEEEEcCCCCChhh--HHHHHHHHHHhCCCceEEEEeeC--CCCCCCCCCCCHHHHHHHHHHH
Q 045335 69 PPTAVLLHGILGSRKN--WGTFARRLARAYPTWQTCDVMVI--PHQSRKGGLTTVASTALDVLKL 129 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~--~~~~~~~L~~~~~g~~vi~~D~~--G~G~S~~~~~~~~~~a~dl~~~ 129 (339)
++.+|++-|+.++... =..+...|.+. |+.++.+|-- -+|.+....++.++-.+.+..+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~--g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~ 63 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFAR--GIKVYLLDGDNLRHGLNADLGFSKEDREENIRRI 63 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHT--TS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHc--CCcEEEecCcchhhccCCCCCCCHHHHHHHHHHH
Confidence 3679999999998754 24555666666 7899998833 3455554567777666555544
No 329
>cd08770 DAP_dppA_3 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=34.41 E-value=1.1e+02 Score=25.71 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=32.4
Q ss_pred ceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC-CCccccccChhHHHHHHHHhh
Q 045335 272 VHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED-AGHWVHADNPDGLFRILTSSF 336 (339)
Q Consensus 272 ~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~~~e~p~~~~~~i~~fl 336 (339)
+||+++.|++- + .+.++.+.|+++.+.++. -|.....-.|++..+.|.+=.
T Consensus 148 VPV~lvsGD~~--------~------~~ea~~~~P~~~tv~vK~~~g~aa~~~~p~~a~~~I~~~~ 199 (263)
T cd08770 148 VPVVFVSGDAG--------L------CAEAKELNPNIVTVPVKEGFGGATISIHPGLACKEIRKGV 199 (263)
T ss_pred CCEEEEecCHH--------H------HHHHHHhCCCceEEEeeeeeccccccCCHHHHHHHHHHHH
Confidence 99999999753 1 121233469999988876 243223345787777776543
No 330
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=34.29 E-value=2.1e+02 Score=22.30 Aligned_cols=81 Identities=9% Similarity=0.139 Sum_probs=47.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHH-----HHHHHcCCCceEEEEEch
Q 045335 71 TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVL-----KLVAQLRITPRVLVGHSF 145 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~-----~~l~~l~~~~~~lvGhS~ 145 (339)
++-+=||+...+..+...+..+.+.+ |+..+..+..- ......+.+..+..+. ++....+ -..++.||-.
T Consensus 32 ~~~vdh~~~~~s~~~~~~v~~~~~~~-~i~~~~~~~~~---~~~~~~~~e~~aR~~Ry~~l~~~a~~~g-~~~i~~GHh~ 106 (182)
T PF01171_consen 32 AVHVDHGLREESDEEAEFVEEICEQL-GIPLYIVRIDE---DRKKGSNIEECARELRYQFLREIAKEEG-CNKIALGHHL 106 (182)
T ss_dssp EEEEE-STSCCHHHHHHHHHHHHHHT-T-EEEEEE--C---HCCTTSTCHHHHHHHHHHHHHHHHHTTT--CEEE---BH
T ss_pred EEEEecCCCcccchhHHHHHHHHHhc-CCceEEEEeee---eecccCCHHHHHHHHHHHHHHHhhhccc-ccceeecCcC
Confidence 45667899887778888888888888 77777666653 1122345555555444 3334444 3568999999
Q ss_pred hHHHHHHHHHH
Q 045335 146 GGKVVLSMVEQ 156 (339)
Q Consensus 146 Gg~ia~~~a~~ 156 (339)
-=.+-..+...
T Consensus 107 dD~~ET~l~~l 117 (182)
T PF01171_consen 107 DDQAETFLMNL 117 (182)
T ss_dssp HHHHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 88877766543
No 331
>cd08769 DAP_dppA_2 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=34.22 E-value=1.2e+02 Score=25.59 Aligned_cols=50 Identities=10% Similarity=0.080 Sum_probs=31.1
Q ss_pred CceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC-CCccc-cccChhHHHHHHHH
Q 045335 271 GVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED-AGHWV-HADNPDGLFRILTS 334 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~gH~~-~~e~p~~~~~~i~~ 334 (339)
++||.++.|++- ..+.++.+.|+++.+.++. -|++. ..-.|++..+.|.+
T Consensus 147 gVPV~lVsGDd~--------------~~~ea~~~~P~~~tv~vK~~~gr~aA~~~~p~~a~~~I~~ 198 (270)
T cd08769 147 GVPVVLVAGDSE--------------LEKEVKEETPWAVFVPTKESLSRYSAKSPSMKKVKEELRE 198 (270)
T ss_pred CCCEEEEecCHH--------------HHHHHHHhCCCceEEEEeeecCCCccccCCHHHHHHHHHH
Confidence 399999999752 1222233469999998876 35433 33456666666554
No 332
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=34.21 E-value=1.6e+02 Score=20.46 Aligned_cols=44 Identities=20% Similarity=0.181 Sum_probs=30.3
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCC
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRK 113 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~ 113 (339)
.+++|+|.+-.+...-+. ....+++.+++-+++..+-.|||...
T Consensus 34 ~~piL~l~~~~Dp~TP~~-~a~~~~~~l~~s~lvt~~g~gHg~~~ 77 (103)
T PF08386_consen 34 APPILVLGGTHDPVTPYE-GARAMAARLPGSRLVTVDGAGHGVYA 77 (103)
T ss_pred CCCEEEEecCcCCCCcHH-HHHHHHHHCCCceEEEEeccCcceec
Confidence 588999999876654432 23455555544589999988999663
No 333
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=34.18 E-value=67 Score=26.87 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=18.7
Q ss_pred ceEEEEEchhHHHHHHHHHHcc
Q 045335 137 PRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 137 ~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
.-.++|-|.|+.++..++...+
T Consensus 33 ~~~i~GtSAGAl~aa~~asg~~ 54 (252)
T cd07221 33 ARMFFGASAGALHCVTFLSGLP 54 (252)
T ss_pred CCEEEEEcHHHHHHHHHHhCCC
Confidence 3479999999999999998654
No 334
>cd07218 Pat_iPLA2 Calcium-independent phospholipase A2; Classified as Group IVA-1 PLA2. Calcium-independent phospholipase A2; otherwise known as Group IVA-1 PLA2. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly);mutagenesis experiments confirm the role of this serine as a nucleophile. Some members of this group show triacylglycerol lipase activity (EC 3:1:1:3). Members include iPLA-1, iPLA-2, and iPLA-3 from Aedes aegypti and show acylglycerol transacylase/lipase activity. Also includes putative iPLA2-eta from Pediculus humanus corporis which shows patatin-like phospholipase activity.
Probab=34.17 E-value=66 Score=26.77 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=18.0
Q ss_pred eEEEEEchhHHHHHHHHHHcc
Q 045335 138 RVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 138 ~~lvGhS~Gg~ia~~~a~~~p 158 (339)
-.+.|-|.|+.+|..+|...+
T Consensus 32 d~i~GtSAGAl~aa~~a~g~~ 52 (245)
T cd07218 32 NKISGASAGALAACCLLCDLP 52 (245)
T ss_pred CeEEEEcHHHHHHHHHHhCCc
Confidence 349999999999999998654
No 335
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=33.45 E-value=1.1e+02 Score=23.52 Aligned_cols=45 Identities=9% Similarity=-0.041 Sum_probs=31.2
Q ss_pred eEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHH
Q 045335 100 QTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 100 ~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia 150 (339)
.+|+.|-.| ...+-+++|+.+....+.-.-+-+.+||-+.|=.-.
T Consensus 69 ~~i~LDe~G------k~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~ 113 (157)
T PRK00103 69 RVIALDERG------KQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPA 113 (157)
T ss_pred EEEEEcCCC------CcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHH
Confidence 689999875 347788899988887443222345789998884333
No 336
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=33.25 E-value=41 Score=28.20 Aligned_cols=20 Identities=25% Similarity=0.333 Sum_probs=14.6
Q ss_pred CCCceEEEEEchhHHHHHHH
Q 045335 134 RITPRVLVGHSFGGKVVLSM 153 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~ 153 (339)
.+..++++|||+|..=...+
T Consensus 233 ~i~~I~i~GhSl~~~D~~Yf 252 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVDYPYF 252 (270)
T ss_pred CCCEEEEEeCCCchhhHHHH
Confidence 44789999999997644433
No 337
>cd07220 Pat_PNPLA2 Patatin-like phospholipase domain containing protein 2. PNPLA2 plays a key role in hydrolysis of stored triacylglecerols and is also known as adipose triglyceride lipase (ATGL). Members of this family share a patain domain, initially discovered in potato tubers. ATGL is expressed in white and brown adipose tissue in high mRNA levels. Mutations in PNPLA2 encoding adipose triglyceride lipase (ATGL) leads to neutral lipid storage disease (NLSD) which is characterized by the accumulation of triglycerides in multiple tissues. ATGL mutations are also commonly associated with severe forms of skeletal- and cardio-myopathy. This family includes patatin-like proteins: TTS-2.2 (transport-secretion protein 2.2), PNPLA2 (Patatin-like phospholipase domain-containing protein 2), and iPLA2-zeta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=33.17 E-value=68 Score=26.76 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=18.4
Q ss_pred ceEEEEEchhHHHHHHHHHHcc
Q 045335 137 PRVLVGHSFGGKVVLSMVEQAA 158 (339)
Q Consensus 137 ~~~lvGhS~Gg~ia~~~a~~~p 158 (339)
.-.++|-|.|+.++..++...+
T Consensus 37 ~~~i~G~SAGAl~aa~~a~g~~ 58 (249)
T cd07220 37 ARKIYGASAGALTATALVTGVC 58 (249)
T ss_pred CCeEEEEcHHHHHHHHHHcCCC
Confidence 3568999999999999987653
No 338
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=33.16 E-value=2.3e+02 Score=21.93 Aligned_cols=69 Identities=13% Similarity=0.074 Sum_probs=41.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
+..|.|+ |++...-......|.+.|||.+++..--+-++ .++ .+++.+.++..+ ..+++||-.+--.
T Consensus 46 ~~~v~ll---G~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~--------~~~-~~~i~~~I~~~~-pdiv~vglG~PkQ 112 (171)
T cd06533 46 GLRVFLL---GAKPEVLEKAAERLRARYPGLKIVGYHHGYFG--------PEE-EEEIIERINASG-ADILFVGLGAPKQ 112 (171)
T ss_pred CCeEEEE---CCCHHHHHHHHHHHHHHCCCcEEEEecCCCCC--------hhh-HHHHHHHHHHcC-CCEEEEECCCCHH
Confidence 4567777 44555666777889999998888774332222 222 222566666655 4567777655554
Q ss_pred HH
Q 045335 149 VV 150 (339)
Q Consensus 149 ia 150 (339)
-.
T Consensus 113 E~ 114 (171)
T cd06533 113 EL 114 (171)
T ss_pred HH
Confidence 43
No 339
>cd08663 DAP_dppA_1 Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacteriz
Probab=32.85 E-value=1.4e+02 Score=25.23 Aligned_cols=51 Identities=22% Similarity=0.274 Sum_probs=32.5
Q ss_pred CceeeEEeccchhhhhhhhhHHHHHHHHHHHHhCCCCeeEEEecC-CC-ccccccChhHHHHHHHHh
Q 045335 271 GVHVNFLKAERSLHRWALEDIQRIHAAEELAVDGGGGVEMHVLED-AG-HWVHADNPDGLFRILTSS 335 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~i~~-~g-H~~~~e~p~~~~~~i~~f 335 (339)
++||.++.|++- ..+.++.+.|+++.+.++. .| +....-.|++..+.|++=
T Consensus 147 gVPV~lVsGDd~--------------~~~ea~~~~p~i~tv~vK~~~gr~aa~~~~p~~a~~~I~~~ 199 (266)
T cd08663 147 GVPVVLVTGDDA--------------ACAEARELGPGVETVAVKEAIGRFAARCLPPAEARALIREA 199 (266)
T ss_pred CCCEEEEecCHH--------------HHHHHHhhCCCcEEEEEecccCCCccccCCHHHHHHHHHHH
Confidence 399999999753 1121233579999999876 34 233344677777776653
No 340
>TIGR02873 spore_ylxY probable sporulation protein, polysaccharide deacetylase family. Members of this protein family are most closely related to TIGR02764, a subset of polysaccharide deacetylase family proteins found in a species if and only if the species forms endospores like those of Bacillus subtilis or Clostridium tetani. This family is likewise restricted to spore-formers, but is not universal among them in having sequences with full-length matches to the model.
Probab=32.27 E-value=59 Score=27.50 Aligned_cols=34 Identities=12% Similarity=0.183 Sum_probs=27.4
Q ss_pred CeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEe
Q 045335 70 PTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVM 105 (339)
Q Consensus 70 ~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D 105 (339)
-.||++|-...+......+++.|.++ ||+++.++
T Consensus 231 G~IILmHd~~~T~~aL~~iI~~Lk~k--Gy~fvtl~ 264 (268)
T TIGR02873 231 GAMVLMHPTASSTEGLEEMITIIKEK--GYKIGTIT 264 (268)
T ss_pred CcEEEEcCCccHHHHHHHHHHHHHHC--CCEEEeHH
Confidence 35889998777777788888999888 89988764
No 341
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=31.67 E-value=1.4e+02 Score=23.17 Aligned_cols=53 Identities=13% Similarity=-0.079 Sum_probs=37.3
Q ss_pred HHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchh
Q 045335 92 LARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFG 146 (339)
Q Consensus 92 L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~G 146 (339)
|.+. |++.+.+|.=+.=-......-..++.+.+.++.+..+.+++.+|-.|.|
T Consensus 36 Lk~~--Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG 88 (168)
T PF09419_consen 36 LKKK--GIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAG 88 (168)
T ss_pred hhhc--CceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence 6665 8999999986553333333444567777777777766668899988875
No 342
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.40 E-value=99 Score=23.60 Aligned_cols=45 Identities=13% Similarity=-0.040 Sum_probs=32.1
Q ss_pred eEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHH
Q 045335 100 QTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVL 151 (339)
Q Consensus 100 ~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~ 151 (339)
.+++.|-+| ...+-.++|+.+..+.+.- .+-+.+||-+.|=.-.+
T Consensus 67 ~~i~LDe~G------k~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~~~~v 111 (153)
T TIGR00246 67 HVVTLDIPG------KPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGLSPTC 111 (153)
T ss_pred eEEEEcCCC------CcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcCCHHH
Confidence 789999875 3477888999998875443 23457889998844443
No 343
>cd01014 nicotinamidase_related Nicotinamidase_ related amidohydrolases. Cysteine hydrolases of unknown function that share the catalytic triad with other amidohydrolases, like nicotinamidase, which converts nicotinamide to nicotinic acid and ammonia.
Probab=31.25 E-value=2.2e+02 Score=21.44 Aligned_cols=30 Identities=17% Similarity=0.082 Sum_probs=24.5
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHH
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a 154 (339)
++.++|+..+++.++|+|-+...++.....
T Consensus 89 ~l~~~L~~~gi~~viv~G~~td~CV~~Ta~ 118 (155)
T cd01014 89 DLEEWLREAGIDHLVICGAMTEMCVDTTVR 118 (155)
T ss_pred CHHHHHHHCCCCEEEEEeeccchhHHHHHH
Confidence 677788899999999999999877655543
No 344
>cd00281 DAP_dppA Peptidase M55, D-aminopeptidase dipeptide-binding protein family. M55 Peptidase, D-Aminopeptidase dipeptide-binding protein (dppA; DAP dppA; EC 3.4.11.-) domain: Peptide transport systems are found in many bacterial species and generally function to accumulate intact peptides in the cell, where they are hydrolyzed. The dipeptide-binding protein (dppA) of Bacillus subtilis belongs to the dipeptide ABC transport (dpp) operon expressed early during sporulation. It is a binuclear zinc-dependent, D-specific aminopeptidase. The biologically active enzyme is a homodecamer with active sites buried in its channel. These self-compartmentalizing proteases are characterized by a SXDXEG motif. D-Ala-D-Ala and D-Ala-Gly-Gly are the preferred substrates. Bacillus subtilis dppA is thought to function as an adaptation to nutrient deficiency; hydrolysis of its substrate releases D-Ala which can be used subsequently as metabolic fuel. This family also contains a number of uncharacterized
Probab=30.98 E-value=1.5e+02 Score=25.00 Aligned_cols=58 Identities=14% Similarity=-0.048 Sum_probs=33.9
Q ss_pred EEEEeeCCCC-CCCC-----CC--CC--HHHHHHHHHHHHHHc---CCCceEEEEEchhHHHHHHHHHHccC
Q 045335 101 TCDVMVIPHQ-SRKG-----GL--TT--VASTALDVLKLVAQL---RITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 101 vi~~D~~G~G-~S~~-----~~--~~--~~~~a~dl~~~l~~l---~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
.|..|+=|-. -... .. |. -..+.+++...++.. |.+ =++|--|.|.+.-+..-..+|.
T Consensus 4 yISaDmEGiaGv~~~~~~~~~~~~Y~r~r~~MT~evnAaiega~~aGa~-eVvVnDsHg~~~Nll~e~L~~~ 74 (265)
T cd00281 4 YISADIEGIAGISHWDEATIGQPGYEAFREQMTEAVIAACEGSLAAGAT-QVLVKDSHDSGRNLIPERLPEP 74 (265)
T ss_pred EEEeCCCCCCCCCChHhcCCCChhHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEEcCCCCccccChhHCCcC
Confidence 4678888863 2221 11 21 234577777777765 333 3778777777766666555553
No 345
>TIGR02884 spore_pdaA delta-lactam-biosynthetic de-N-acetylase. Muramic delta-lactam is an unusual constituent of peptidoglycan, found only in bacterial spores in the peptidoglycan wall, or spore cortex. The proteins in this family are PdaA (yfjS), a member of a larger family of polysaccharide deacetylases, and are specificially involved in delta-lactam biosynthesis. PdaA acts immediately after CwlD, an N-acetylmuramoyl-L-alanine amidase and performs a de-N-acetylation. PdaA may also perform the following transpeptidation for lactam ring formation, as heterologous expression in E. coli of CwlD and PdaA together is sufficient for delta-lactam production.
Probab=30.66 E-value=64 Score=26.34 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=26.5
Q ss_pred CeEEEEcCC-CCChhhHHHHHHHHHHhCCCceEEEEe
Q 045335 70 PTAVLLHGI-LGSRKNWGTFARRLARAYPTWQTCDVM 105 (339)
Q Consensus 70 ~~vv~lHG~-~~~~~~~~~~~~~L~~~~~g~~vi~~D 105 (339)
..||++|.. ..+.+....+++.|.++ ||+++.++
T Consensus 187 g~IiLlHd~~~~t~~aL~~ii~~lk~~--Gy~fvtl~ 221 (224)
T TIGR02884 187 GAILLLHAVSKDNAEALDKIIKDLKEQ--GYTFKSLD 221 (224)
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHHHC--CCEEEEhH
Confidence 469999974 44567778889999888 89988764
No 346
>PF02633 Creatininase: Creatinine amidohydrolase; InterPro: IPR003785 This family includes the enzymes creatininase and 2-amino-5-formylamino-6-ribosylaminopyrimidin-4(3H)-one 5'-monophosphate deformylase, also known as formamide hydrolase. Creatinase or creatinine amidohydrolase (3.5.2.10 from EC) catalyses the hydrolysis of creatinine to creatine, which can then be metabolised to urea and sarcosine by creatinase (3.5.3.3 from EC). Creatininase is a member of the urease-related amidohydrolase superfamily []. Formamide hydrolase catalyzes the hydrolysis of the formamide of 2-amino-5-formylamino-6-ribosylamino-4(3H)-pyrimidinone 5'-monophosphate (FAPy) to form 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (APy) (3.5.1.102 from EC). ; PDB: 3A6K_F 3A6F_A 3A6D_B 1J2U_B 3A6J_C 1J2T_A 3A6G_C 3A6H_F 1Q3K_E 3A6L_C ....
Probab=30.49 E-value=1.3e+02 Score=24.80 Aligned_cols=68 Identities=19% Similarity=0.113 Sum_probs=33.5
Q ss_pred HHHHHHHHHhCCCceEEEEeeCCCCCCCC----C---CC---CHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHH
Q 045335 86 GTFARRLARAYPTWQTCDVMVIPHQSRKG----G---LT---TVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 86 ~~~~~~L~~~~~g~~vi~~D~~G~G~S~~----~---~~---~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
..++...+++. |- +++.-..-+|.|.. + .. ++..+..|+.+-+...|.+++++|..-.|-.-++..++
T Consensus 43 ~~~a~~~a~~~-~~-~lv~P~i~yG~s~~h~~fpGTisl~~~t~~~~l~di~~sl~~~Gf~~ivivngHgGN~~~l~~~~ 120 (237)
T PF02633_consen 43 EAVAERAAERL-GE-ALVLPPIPYGCSPHHMGFPGTISLSPETLIALLRDILRSLARHGFRRIVIVNGHGGNIAALEAAA 120 (237)
T ss_dssp HHHHHHHHHHH-TH-EEE---B--BB-GCCTTSTT-BBB-HHHHHHHHHHHHHHHHHHT--EEEEEESSTTHHHHHHHHH
T ss_pred HHHHHHHHHHC-Cc-EEEeCCCccccCcccCCCCCeEEeCHHHHHHHHHHHHHHHHHcCCCEEEEEECCHhHHHHHHHHH
Confidence 56677777776 21 55544445676522 1 13 45555556666556668899877755555443444444
No 347
>PRK06849 hypothetical protein; Provisional
Probab=30.28 E-value=3.4e+02 Score=24.29 Aligned_cols=70 Identities=11% Similarity=-0.013 Sum_probs=45.2
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCC------------CCCCCCHHHHHHHHHHHHHHcCCC
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSR------------KGGLTTVASTALDVLKLVAQLRIT 136 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S------------~~~~~~~~~~a~dl~~~l~~l~~~ 136 (339)
+++||++ |... ..=..++..|.+. |++|++.|......+ +.+..+.+.+.+.+.++++..++
T Consensus 4 ~~~VLI~-G~~~--~~~l~iar~l~~~--G~~Vi~~d~~~~~~~~~s~~~d~~~~~p~p~~d~~~~~~~L~~i~~~~~i- 77 (389)
T PRK06849 4 KKTVLIT-GARA--PAALELARLFHNA--GHTVILADSLKYPLSRFSRAVDGFYTIPSPRWDPDAYIQALLSIVQRENI- 77 (389)
T ss_pred CCEEEEe-CCCc--HHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHhhhheEEeCCCCCCHHHHHHHHHHHHHHcCC-
Confidence 4555555 4332 2334677888887 899999998754322 11335677889999999998775
Q ss_pred ceEEEEEc
Q 045335 137 PRVLVGHS 144 (339)
Q Consensus 137 ~~~lvGhS 144 (339)
.+++-+.+
T Consensus 78 d~vIP~~e 85 (389)
T PRK06849 78 DLLIPTCE 85 (389)
T ss_pred CEEEECCh
Confidence 44555554
No 348
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=29.91 E-value=74 Score=27.55 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=18.3
Q ss_pred CCCceEEEEEchhHHHHHHHHH
Q 045335 134 RITPRVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 134 ~~~~~~lvGhS~Gg~ia~~~a~ 155 (339)
+.++..+.|||+|=+.|+..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4678899999999988887764
No 349
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=29.64 E-value=2.2e+02 Score=20.51 Aligned_cols=70 Identities=13% Similarity=0.042 Sum_probs=46.1
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC-CceEEEEEchhHHH
Q 045335 71 TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRI-TPRVLVGHSFGGKV 149 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~-~~~~lvGhS~Gg~i 149 (339)
-||.-|| .-+......+..+.... -.+.++++. +..+.+++.+.+.++++..+. +.+.++-==+||..
T Consensus 3 ili~sHG--~~A~gi~~~~~~i~G~~--~~i~~~~~~-------~~~~~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 3 IIIATHG--GFASGLLNSAEMILGEQ--ENVEAIDFP-------PGESPDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred EEEEcCH--HHHHHHHHHHHHhcCCC--CCeEEEEeC-------CCCCHHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 4677888 44445555555554432 267788876 567899999999999998865 44555544446665
Q ss_pred HH
Q 045335 150 VL 151 (339)
Q Consensus 150 a~ 151 (339)
..
T Consensus 72 ~n 73 (122)
T cd00006 72 NN 73 (122)
T ss_pred HH
Confidence 44
No 350
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=28.94 E-value=3.4e+02 Score=23.59 Aligned_cols=74 Identities=18% Similarity=0.124 Sum_probs=49.5
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeC----CCC-CCCC--------------------CCCCHHHHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVI----PHQ-SRKG--------------------GLTTVASTA 123 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~----G~G-~S~~--------------------~~~~~~~~a 123 (339)
.+.+++|=|=.+++.+-. .=.|++.+ |-.||..|-. |.- .|.+ ..|+..++.
T Consensus 2 ~~~~i~I~GPTAsGKT~l--ai~LAk~~-~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~ 78 (308)
T COG0324 2 KPKLIVIAGPTASGKTAL--AIALAKRL-GGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQ 78 (308)
T ss_pred CccEEEEECCCCcCHHHH--HHHHHHHc-CCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHH
Confidence 366888888877776643 44888888 6699999943 331 1111 237888888
Q ss_pred HHHHHHHHHcCC--CceEEEEEch
Q 045335 124 LDVLKLVAQLRI--TPRVLVGHSF 145 (339)
Q Consensus 124 ~dl~~~l~~l~~--~~~~lvGhS~ 145 (339)
+++...++.... +-.+|||-|+
T Consensus 79 ~~a~~~i~~i~~rgk~pIlVGGTg 102 (308)
T COG0324 79 RDALAAIDDILARGKLPILVGGTG 102 (308)
T ss_pred HHHHHHHHHHHhCCCCcEEEccHH
Confidence 888888877633 3457787553
No 351
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=28.78 E-value=3.6e+02 Score=22.84 Aligned_cols=75 Identities=8% Similarity=0.006 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEE-EchhHHHHHHHHHHccCCCCCC
Q 045335 86 GTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVG-HSFGGKVVLSMVEQAAKPLARP 164 (339)
Q Consensus 86 ~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvG-hS~Gg~ia~~~a~~~p~~~~~v 164 (339)
...+..+.+.. ++.++.+|-+|..... ....+.+.++++......++||- -++++.-+...+.++.. + .+
T Consensus 143 ~~~l~~l~~~~-~~D~ViIDt~Gr~~~~------~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~-~-~~ 213 (270)
T PRK06731 143 TRALTYFKEEA-RVDYILIDTAGKNYRA------SETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNFKD-I-HI 213 (270)
T ss_pred HHHHHHHHhcC-CCCEEEEECCCCCcCC------HHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCC-C-CC
Confidence 34444554422 5699999999875322 33444455566555544556554 46788888888887755 2 56
Q ss_pred ceEEE
Q 045335 165 VRVWV 169 (339)
Q Consensus 165 ~~lv~ 169 (339)
.++|+
T Consensus 214 ~~~I~ 218 (270)
T PRK06731 214 DGIVF 218 (270)
T ss_pred CEEEE
Confidence 67666
No 352
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=28.60 E-value=1.5e+02 Score=25.32 Aligned_cols=36 Identities=17% Similarity=0.107 Sum_probs=22.0
Q ss_pred ceEEEEeeCCCCCCCCCC-----CC----HHHHHHHHHHHHHHcCC
Q 045335 99 WQTCDVMVIPHQSRKGGL-----TT----VASTALDVLKLVAQLRI 135 (339)
Q Consensus 99 ~~vi~~D~~G~G~S~~~~-----~~----~~~~a~dl~~~l~~l~~ 135 (339)
-.+|++| ||||..++.. .. .-+++..+.+.|+..+.
T Consensus 56 ~~~IvID-pGHGG~DpGAvg~~G~~EKdi~L~IA~~l~~~L~~~G~ 100 (287)
T PRK10319 56 KRVVMLD-PGHGGIDTGAIGRNGSKEKHVVLAIAKNVRSILRNHGI 100 (287)
T ss_pred CeEEEEE-CCCCCCCCCCcCCCCCcHHHHHHHHHHHHHHHHHHCCC
Confidence 3788888 7998764432 11 22456667777776553
No 353
>cd07222 Pat_PNPLA4 Patatin-like phospholipase domain containing protein 4. PNPLA4, also known as GS2 (gene sequence-2), shows both lipase and transacylation activities. GS2 lipase is expressed in various tissues, predominantly in muscle and adipocytes tissue. It is also expressed in keratinocytes and shows retinyl ester hydrolase, acylglycerol, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: GS2 from mammals, PNPLA4 (Patatin-like phospholipase domain-containing protein 4), and iPLA2-eta (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=28.36 E-value=92 Score=25.88 Aligned_cols=30 Identities=17% Similarity=0.132 Sum_probs=21.4
Q ss_pred HHHHHHHcCCC---ce-EEEEEchhHHHHHHHHH
Q 045335 126 VLKLVAQLRIT---PR-VLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 126 l~~~l~~l~~~---~~-~lvGhS~Gg~ia~~~a~ 155 (339)
+.+.+.+.++. ++ .++|-|.|+.+|..+|.
T Consensus 17 Vl~~L~e~g~~l~~~~~~i~GtSaGAl~aa~~a~ 50 (246)
T cd07222 17 AAKALLRHGKKLLKRVKRFAGASAGSLVAAVLLT 50 (246)
T ss_pred HHHHHHHcCchhhccCCEEEEECHHHHHHHHHhc
Confidence 33444445543 34 79999999999999984
No 354
>COG2939 Carboxypeptidase C (cathepsin A) [Amino acid transport and metabolism]
Probab=27.81 E-value=72 Score=29.46 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=24.9
Q ss_pred CeeEEEecCCCccccccChhHHHHHHHHhhh
Q 045335 307 GVEMHVLEDAGHWVHADNPDGLFRILTSSFE 337 (339)
Q Consensus 307 ~~~~~~i~~~gH~~~~e~p~~~~~~i~~fl~ 337 (339)
+-.+..+-.+||++.+++|+...+.+..|+.
T Consensus 459 n~~~~r~y~aGHMvp~d~P~~~~~~~~~~~~ 489 (498)
T COG2939 459 NLTFLRIYEAGHMVPYDRPESSLEMVNLWIN 489 (498)
T ss_pred CceEEEEecCcceeecCChHHHHHHHHHHHh
Confidence 4455555567999999999999999988875
No 355
>PRK11789 N-acetyl-anhydromuranmyl-L-alanine amidase; Provisional
Probab=27.79 E-value=78 Score=25.04 Aligned_cols=46 Identities=15% Similarity=-0.014 Sum_probs=28.0
Q ss_pred eEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEch
Q 045335 100 QTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSF 145 (339)
Q Consensus 100 ~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~ 145 (339)
.-|.+.+-|.+..+.+..-++.++.-+..+++..++.+-.|+||+-
T Consensus 113 ~SIGIEl~G~~~~~~t~aQ~~aL~~L~~~L~~~y~i~~~~IvGH~d 158 (185)
T PRK11789 113 FSIGIELEGTDTLPFTDAQYQALAALTRALRAAYPIIAERITGHSD 158 (185)
T ss_pred CEEEEEEECCCCCCccHHHHHHHHHHHHHHHHHcCCCHHhEEehhh
Confidence 4677888776543222223444455566666777766668999963
No 356
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=27.73 E-value=2.2e+02 Score=22.07 Aligned_cols=55 Identities=7% Similarity=-0.132 Sum_probs=36.9
Q ss_pred CCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC--C-------CHHHHHHHHHHHHHHcCC
Q 045335 79 LGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL--T-------TVASTALDVLKLVAQLRI 135 (339)
Q Consensus 79 ~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~--~-------~~~~~a~dl~~~l~~l~~ 135 (339)
--+...|+..+..+.+. |++.+.+..-|++...--+ . ...+..+.+.+..+..|+
T Consensus 16 ~~~~~~W~~~~~~m~~~--GidtlIlq~~~~~~~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~Gm 79 (166)
T PF14488_consen 16 NWTPAQWREEFRAMKAI--GIDTLILQWTGYGGFAFYPSKLSPGGFYMPPVDLLEMILDAADKYGM 79 (166)
T ss_pred CCCHHHHHHHHHHHHHc--CCcEEEEEEeecCCcccCCccccCccccCCcccHHHHHHHHHHHcCC
Confidence 34568999999999998 8999999988888653111 1 233455555555555553
No 357
>PLN02840 tRNA dimethylallyltransferase
Probab=27.59 E-value=3.6e+02 Score=24.64 Aligned_cols=74 Identities=15% Similarity=0.148 Sum_probs=46.0
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeC----CC--CCCC-------------------CCCCCHHHH
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVI----PH--QSRK-------------------GGLTTVAST 122 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~----G~--G~S~-------------------~~~~~~~~~ 122 (339)
....+|+|-|-.+++.. .+...|++.+ +..++..|-. |. |... ...|+..++
T Consensus 19 ~~~~vi~I~GptgsGKT--tla~~La~~~-~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F 95 (421)
T PLN02840 19 KKEKVIVISGPTGAGKS--RLALELAKRL-NGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAF 95 (421)
T ss_pred cCCeEEEEECCCCCCHH--HHHHHHHHHC-CCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHH
Confidence 34567888888777654 3455777776 4467777753 22 1111 124789999
Q ss_pred HHHHHHHHHHcC-C-CceEEEEEc
Q 045335 123 ALDVLKLVAQLR-I-TPRVLVGHS 144 (339)
Q Consensus 123 a~dl~~~l~~l~-~-~~~~lvGhS 144 (339)
.++..+.++.+. . +..+|||-+
T Consensus 96 ~~~A~~~I~~i~~rgkiPIvVGGT 119 (421)
T PLN02840 96 FDDARRATQDILNRGRVPIVAGGT 119 (421)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999988888762 2 334666644
No 358
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=27.51 E-value=2.1e+02 Score=25.84 Aligned_cols=30 Identities=10% Similarity=-0.056 Sum_probs=20.5
Q ss_pred HHHHHHhCCCceEEEEeeCCCCCCCCCCCC
Q 045335 89 ARRLARAYPTWQTCDVMVIPHQSRKGGLTT 118 (339)
Q Consensus 89 ~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~ 118 (339)
+..+.++-..|.||.+|.|.+++|.....+
T Consensus 281 l~~~~~~g~~fDlIilDPPsF~r~k~~~~~ 310 (393)
T COG1092 281 LRKAERRGEKFDLIILDPPSFARSKKQEFS 310 (393)
T ss_pred HHHHHhcCCcccEEEECCcccccCcccchh
Confidence 344444212469999999999999765543
No 359
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=27.42 E-value=2.3e+02 Score=20.21 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCC---CChhhHHHHHHHHHHhCCC-ceEEEEe
Q 045335 68 DPPTAVLLHGIL---GSRKNWGTFARRLARAYPT-WQTCDVM 105 (339)
Q Consensus 68 ~~~~vv~lHG~~---~~~~~~~~~~~~L~~~~~g-~~vi~~D 105 (339)
+++.||++|.-+ .......+.++.+++.|++ ..++-+|
T Consensus 27 ~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVd 68 (111)
T cd02965 27 GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVG 68 (111)
T ss_pred CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEE
Confidence 588999999884 3446778889999998854 3444555
No 360
>PF03490 Varsurf_PPLC: Variant-surface-glycoprotein phospholipase C; InterPro: IPR003633 Variant-surface-glycoprotein phospholipase C, by hydrolysis of the attached glycolipid, releases soluble variant surface glycoprotein containing phosphoinositol from the cell wall after lysis. It catalyses the conversion of variant-surface-glycoprotein 1,2 didecanoyl-SN-phosphatidylinositol and water to 1,2-didecanoylglycerol and the soluble variant-surface-glycoprotein. It also cleaves similar membrane anchors on some mammalian proteins.; GO: 0047396 glycosylphosphatidylinositol diacylglycerol-lyase activity, 0006650 glycerophospholipid metabolic process
Probab=26.80 E-value=72 Score=18.86 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHHHHHHcCCCceEEEE
Q 045335 116 LTTVASTALDVLKLVAQLRITPRVLVG 142 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l~~l~~~~~~lvG 142 (339)
.++.+.+-.|+...|..+.+..+.++|
T Consensus 5 ~w~PqSWM~DLrS~I~~~~I~ql~ipG 31 (51)
T PF03490_consen 5 AWHPQSWMSDLRSSIGEMAITQLFIPG 31 (51)
T ss_pred ccCcHHHHHHHHHHHhcceeeeEEecc
Confidence 466788899999999999998888887
No 361
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=26.72 E-value=2.2e+02 Score=22.41 Aligned_cols=34 Identities=15% Similarity=0.109 Sum_probs=21.0
Q ss_pred EEEEeeCCCCCCCCCCC-----C----HHHHHHHHHHHHHHcCC
Q 045335 101 TCDVMVIPHQSRKGGLT-----T----VASTALDVLKLVAQLRI 135 (339)
Q Consensus 101 vi~~D~~G~G~S~~~~~-----~----~~~~a~dl~~~l~~l~~ 135 (339)
+|++| ||||..++... . .-+++.-+.+.|++.+.
T Consensus 2 ~I~iD-pGHGg~d~GA~~~~g~~E~~~~l~ia~~l~~~L~~~G~ 44 (189)
T TIGR02883 2 IIVID-PGHGGIDGGAVGKDGTLEKDITLEIALKLKDYLQEQGA 44 (189)
T ss_pred EEEEe-CCCCCCCCCCCCCCCccHHHHHHHHHHHHHHHHHhCCC
Confidence 67888 79997754321 1 12456667777777664
No 362
>PRK08118 topology modulation protein; Reviewed
Probab=26.53 E-value=3e+02 Score=21.14 Aligned_cols=85 Identities=20% Similarity=0.216 Sum_probs=46.7
Q ss_pred EEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHH
Q 045335 73 VLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLS 152 (339)
Q Consensus 73 v~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~ 152 (339)
|+|.|.++++.+. ++..|++.+ ++.++.+|..-+... ....+-++..+.+.+++. .+..++=|+ +++.....
T Consensus 4 I~I~G~~GsGKST--lak~L~~~l-~~~~~~lD~l~~~~~-w~~~~~~~~~~~~~~~~~---~~~wVidG~-~~~~~~~~ 75 (167)
T PRK08118 4 IILIGSGGSGKST--LARQLGEKL-NIPVHHLDALFWKPN-WEGVPKEEQITVQNELVK---EDEWIIDGN-YGGTMDIR 75 (167)
T ss_pred EEEECCCCCCHHH--HHHHHHHHh-CCCceecchhhcccC-CcCCCHHHHHHHHHHHhc---CCCEEEeCC-cchHHHHH
Confidence 7888888887663 567788777 778888884432211 011222333333333333 245666665 55544322
Q ss_pred HHHHccCCCCCCceEEEEecc
Q 045335 153 MVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 153 ~a~~~p~~~~~v~~lv~l~~~ 173 (339)
...++ .++.++.+
T Consensus 76 --l~~~d------~vi~Ld~p 88 (167)
T PRK08118 76 --LNAAD------TIIFLDIP 88 (167)
T ss_pred --HHhCC------EEEEEeCC
Confidence 22344 67888765
No 363
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=26.20 E-value=3.3e+02 Score=21.46 Aligned_cols=71 Identities=21% Similarity=0.091 Sum_probs=40.1
Q ss_pred eEEEEcCCCCChhhH----HHHHHHHHHhCCCceEEEEeeCCCCCCC---CCCCCHHHHHHHHHHHHHHc---CCCceEE
Q 045335 71 TAVLLHGILGSRKNW----GTFARRLARAYPTWQTCDVMVIPHQSRK---GGLTTVASTALDVLKLVAQL---RITPRVL 140 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~----~~~~~~L~~~~~g~~vi~~D~~G~G~S~---~~~~~~~~~a~dl~~~l~~l---~~~~~~l 140 (339)
.+++--|...+...+ ..++..+.+.+|.-.|+++...++.... ....+.+++-+.+.+.++++ +.+.+++
T Consensus 62 ~~~ld~~~N~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~ 141 (178)
T PF14606_consen 62 LIVLDCGPNMSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYY 141 (178)
T ss_dssp EEEEEESHHCCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEE
T ss_pred EEEEEeecCCCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEE
Confidence 344444444566555 4566777777788899999987776442 22456777777777777666 7777776
Q ss_pred E
Q 045335 141 V 141 (339)
Q Consensus 141 v 141 (339)
+
T Consensus 142 l 142 (178)
T PF14606_consen 142 L 142 (178)
T ss_dssp E
T ss_pred e
Confidence 5
No 364
>PRK14974 cell division protein FtsY; Provisional
Probab=26.10 E-value=4.6e+02 Score=23.12 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=36.2
Q ss_pred CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEE
Q 045335 98 TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWV 169 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~ 169 (339)
++.++.+|-+|... +-..+.+.+..+.+..+...+++|.-+.-|.-+..-+..+.+.+ .+.++|+
T Consensus 222 ~~DvVLIDTaGr~~------~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~-~~~giIl 286 (336)
T PRK14974 222 GIDVVLIDTAGRMH------TDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAV-GIDGVIL 286 (336)
T ss_pred CCCEEEEECCCccC------CcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcC-CCCEEEE
Confidence 56788888776543 22344455555555555555667766666666665555443222 3445444
No 365
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=25.49 E-value=1.7e+02 Score=20.62 Aligned_cols=77 Identities=14% Similarity=0.144 Sum_probs=40.9
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhC-CCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchh
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAY-PTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFG 146 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~-~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~G 146 (339)
..|.|+|---+.. |...+..|-... ..+.|+-+|...+|. ++-+.+.++--+-....+.|-|...|
T Consensus 13 ~~~VVifSKs~C~----~c~~~k~ll~~~~v~~~vvELD~~~~g~---------eiq~~l~~~tg~~tvP~vFI~Gk~iG 79 (104)
T KOG1752|consen 13 ENPVVIFSKSSCP----YCHRAKELLSDLGVNPKVVELDEDEDGS---------EIQKALKKLTGQRTVPNVFIGGKFIG 79 (104)
T ss_pred cCCEEEEECCcCc----hHHHHHHHHHhCCCCCEEEEccCCCCcH---------HHHHHHHHhcCCCCCCEEEECCEEEc
Confidence 4677777764333 222233333322 134777777664442 33333333322234456788899999
Q ss_pred HHHHHHHHHHc
Q 045335 147 GKVVLSMVEQA 157 (339)
Q Consensus 147 g~ia~~~a~~~ 157 (339)
|.--+.-....
T Consensus 80 G~~dl~~lh~~ 90 (104)
T KOG1752|consen 80 GASDLMALHKS 90 (104)
T ss_pred CHHHHHHHHHc
Confidence 98766655443
No 366
>PRK10115 protease 2; Provisional
Probab=25.49 E-value=2e+02 Score=28.30 Aligned_cols=68 Identities=16% Similarity=0.242 Sum_probs=42.8
Q ss_pred CCCeEEEEcCCCCCh-hhH--HHHHHHHHHhCCCceEEEE---eeCCCCCCCCCCCCHHHHHHHHHHHHHHcCC
Q 045335 68 DPPTAVLLHGILGSR-KNW--GTFARRLARAYPTWQTCDV---MVIPHQSRKGGLTTVASTALDVLKLVAQLRI 135 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~-~~~--~~~~~~L~~~~~g~~vi~~---D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~ 135 (339)
.-|+++++||.-... ..| ..+...|.+.....+.+.+ .--|||........+++.|..+.=+++.++.
T Consensus 605 ~~P~lLi~~g~~D~RV~~~~~~k~~a~Lr~~~~~~~~vl~~~~~~~GHg~~~~r~~~~~~~A~~~aFl~~~~~~ 678 (686)
T PRK10115 605 AYPHLLVTTGLHDSQVQYWEPAKWVAKLRELKTDDHLLLLCTDMDSGHGGKSGRFKSYEGVAMEYAFLIALAQG 678 (686)
T ss_pred CCCceeEEecCCCCCcCchHHHHHHHHHHhcCCCCceEEEEecCCCCCCCCcCHHHHHHHHHHHHHHHHHHhCC
Confidence 357788999999876 222 4567777765312234444 4468885443345677777777777777654
No 367
>PRK09936 hypothetical protein; Provisional
Probab=25.38 E-value=3.6e+02 Score=23.12 Aligned_cols=32 Identities=13% Similarity=0.091 Sum_probs=28.3
Q ss_pred CChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCC
Q 045335 80 GSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRK 113 (339)
Q Consensus 80 ~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~ 113 (339)
.+...|..+...+... |++.+.+.+-++|.|+
T Consensus 35 ~~~~qWq~~~~~~~~~--G~~tLivQWt~yG~~~ 66 (296)
T PRK09936 35 VTDTQWQGLWSQLRLQ--GFDTLVVQWTRYGDAD 66 (296)
T ss_pred CCHHHHHHHHHHHHHc--CCcEEEEEeeeccCCC
Confidence 4568999999999988 9999999999999883
No 368
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=25.31 E-value=4.2e+02 Score=22.41 Aligned_cols=75 Identities=15% Similarity=0.157 Sum_probs=46.6
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEE-EEEchh
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVL-VGHSFG 146 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~l-vGhS~G 146 (339)
.+.||++=-|..++.+.|...++.+... |..=+.+=.+|. ...+.|...+.--.....+++.-.-++.+ ..||.|
T Consensus 133 ~gkPV~lk~G~~~s~~e~~~A~e~i~~~--Gn~~i~L~~rG~--~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G 208 (266)
T PRK13398 133 TKKPILLKRGMSATLEEWLYAAEYIMSE--GNENVVLCERGI--RTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATG 208 (266)
T ss_pred CCCcEEEeCCCCCCHHHHHHHHHHHHhc--CCCeEEEEECCC--CCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCccc
Confidence 3678999999999999999999998876 443344445553 11123443333333333444432245666 699998
No 369
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=25.23 E-value=1.6e+02 Score=24.18 Aligned_cols=49 Identities=12% Similarity=0.054 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEE
Q 045335 84 NWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLV 141 (339)
Q Consensus 84 ~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lv 141 (339)
..+.+...|.+. |++|..+.+. ...+...+.+-|..++++.+++.+.++
T Consensus 50 aMRhfa~~L~~~--G~~V~Y~~~~-------~~~~~~s~~~~L~~~~~~~~~~~~~~~ 98 (224)
T PF04244_consen 50 AMRHFADELRAK--GFRVHYIELD-------DPENTQSFEDALARALKQHGIDRLHVM 98 (224)
T ss_dssp HHHHHHHHHHHT--T--EEEE-TT--------TT--SSHHHHHHHHHHHH----EEEE
T ss_pred HHHHHHHHHHhC--CCEEEEEeCC-------CccccccHHHHHHHHHHHcCCCEEEEE
Confidence 457778888888 9999999875 223333566777777888877776554
No 370
>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]
Probab=25.00 E-value=3.6e+02 Score=23.37 Aligned_cols=62 Identities=10% Similarity=0.075 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHH
Q 045335 83 KNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKV 149 (339)
Q Consensus 83 ~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~i 149 (339)
-.|..+...+.++. +++.+. |..|-+.++..++.++.+.+ .+++..+..-+++|-.++|-.+
T Consensus 153 iD~~~v~~~i~~~t---kli~IQ-RS~GY~~RpS~~I~eI~~~i-~~vk~inpn~ivFVDNCYGEFv 214 (416)
T COG4100 153 IDIQAVKTAISDRT---KLIGIQ-RSKGYAWRPSLSIAEIEEMI-TFVKEINPNVIVFVDNCYGEFV 214 (416)
T ss_pred ccHHHHHHhcCccc---eEEEEE-eccCcCCCCcccHHHHHHHH-HHHHhcCCCEEEEEeccchhhh
Confidence 46788888888775 787775 67888888889998887654 4667777666788999999765
No 371
>KOG4231 consensus Intracellular membrane-bound Ca2+-independent phospholipase A2 [Lipid transport and metabolism]
Probab=24.77 E-value=90 Score=28.90 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=31.2
Q ss_pred CceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCce-----EEEEEchhHHHHHHHHHH
Q 045335 98 TWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPR-----VLVGHSFGGKVVLSMVEQ 156 (339)
Q Consensus 98 g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~-----~lvGhS~Gg~ia~~~a~~ 156 (339)
|.+|+.+|--|. ---++-.+.+-++.+..+++ .++|-|.||.+|..+-..
T Consensus 416 G~rILSiDGGGt---------rG~~~lqiL~kieklsgKpIheLFD~ICGvSTG~ilA~~Lg~k 470 (763)
T KOG4231|consen 416 GLRILSIDGGGT---------RGLATLQILKKIEKLSGKPIHELFDLICGVSTGGILAIALGVK 470 (763)
T ss_pred ceEEEEecCCCc---------cchhHHHHHHHHHHhcCCcHHHHHHHHhccCchHHHHHHHHhc
Confidence 677887773221 11223334444455555665 478999999999988654
No 372
>COG0163 UbiX 3-polyprenyl-4-hydroxybenzoate decarboxylase [Coenzyme metabolism]
Probab=24.48 E-value=3.4e+02 Score=21.47 Aligned_cols=62 Identities=11% Similarity=-0.064 Sum_probs=41.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH-HHHHcCCCc
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK-LVAQLRITP 137 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~-~l~~l~~~~ 137 (339)
+|.|++.--.+-+.-.-+ ..-.|++.. -++.|-.|+|-. .+.|++|+++.+.. ++|.++++.
T Consensus 118 R~LVLv~REtPl~~ihLe-NMlkl~~~G---aiI~Pp~PaFY~---~P~sieDlvd~~v~rvLD~lgI~~ 180 (191)
T COG0163 118 RPLVLVPRETPLSLIHLE-NMLKLAEMG---AIIMPPMPAFYH---KPQSIEDLVDFVVGRVLDLLGIEH 180 (191)
T ss_pred CceEEEeccCCccHHHHH-HHHHHHHCC---CEecCCChhhhc---CCCCHHHHHHHHHHHHHHHhCCCC
Confidence 455555555555554433 334566664 778888887753 35799999998765 889999864
No 373
>PRK06824 translation initiation factor Sui1; Validated
Probab=24.43 E-value=2.8e+02 Score=20.10 Aligned_cols=57 Identities=11% Similarity=0.037 Sum_probs=41.8
Q ss_pred CCCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCC-C-CHHHHHHHHHHHHHHcCC
Q 045335 68 DPPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGL-T-TVASTALDVLKLVAQLRI 135 (339)
Q Consensus 68 ~~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~-~-~~~~~a~dl~~~l~~l~~ 135 (339)
.+..|-.|-|+.........++..|...+ |+|.|-... . =--|..+.+.++|...+.
T Consensus 53 ~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~-----------gcGGtvkd~~IeiQGD~r~~v~~~L~~~G~ 111 (118)
T PRK06824 53 GGKTVTVITGVPLAEDALKELAKELKRRC-----------GTGGTLKDGVIEIQGDHVELLLAELLKRGF 111 (118)
T ss_pred CCceEEEEeCCcCCHHHHHHHHHHHHHHh-----------cCCceEecCEEEEcCcHHHHHHHHHHHCCC
Confidence 47899999999988888889999999876 666663222 1 122566777888877765
No 374
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=24.33 E-value=2.2e+02 Score=25.95 Aligned_cols=44 Identities=14% Similarity=0.110 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCC
Q 045335 69 PPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSR 112 (339)
Q Consensus 69 ~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S 112 (339)
+|.+|++.+.+.+. .....++..+.++++|..|+.+.-+|+..|
T Consensus 97 ~P~~I~V~tTC~~e~IGDDi~~v~~e~~~~~~~~pvv~v~t~Gf~g~ 143 (427)
T PRK02842 97 NISVLFLVGSCPSEVIKLDLEGLAERLSTEFAGVPVLNYSGSGLETT 143 (427)
T ss_pred CCCEEEEECCChHHhhcCCHHHHHHHhhcccCCCeEEEeeCCCcccc
Confidence 57788888877664 567778888877766788999999988544
No 375
>PRK05920 aromatic acid decarboxylase; Validated
Probab=24.30 E-value=3.8e+02 Score=21.60 Aligned_cols=62 Identities=13% Similarity=-0.071 Sum_probs=33.9
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHH-HHHHcCCC
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLK-LVAQLRIT 136 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~-~l~~l~~~ 136 (339)
+.+||+.+-.......-...+..|.+. |+.|+-++ +|+ ...+.+++++++.+.. +++.+|++
T Consensus 130 ~~pvvi~P~~m~~~~~~~~nl~~L~~~--G~~ii~P~-~g~---y~~p~~~~~~~~f~~~~~l~~lg~~ 192 (204)
T PRK05920 130 RRKLILVPRETPLSLIHLENMLKLAEA--GAIILPAI-PAF---YHKPQTIDDLVDFVVARILDLLGID 192 (204)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHC--CCEEeCCc-ccc---cCCCCCHHHHHHHHHHHHHHhcCCC
Confidence 345666554222222225566777765 66654433 222 1234567888877655 78888864
No 376
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=24.23 E-value=77 Score=36.22 Aligned_cols=29 Identities=31% Similarity=0.421 Sum_probs=23.9
Q ss_pred HHHHHHHcCCCceEEEEEchhHHHHHHHH
Q 045335 126 VLKLVAQLRITPRVLVGHSFGGKVVLSMV 154 (339)
Q Consensus 126 l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a 154 (339)
+.++++..|+++-.++|||+|=+.|+..|
T Consensus 664 l~~lL~~~Gi~Pd~v~GHSlGE~aAa~aA 692 (2582)
T TIGR02813 664 QYKLFTQAGFKADMTAGHSFGELSALCAA 692 (2582)
T ss_pred HHHHHHHcCCccceeecCCHHHHHHHHHh
Confidence 44566788999999999999998887765
No 377
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=23.89 E-value=84 Score=27.60 Aligned_cols=28 Identities=18% Similarity=0.122 Sum_probs=19.1
Q ss_pred HHHHHcCCCc------eEEEEEchhHHHHHHHHH
Q 045335 128 KLVAQLRITP------RVLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 128 ~~l~~l~~~~------~~lvGhS~Gg~ia~~~a~ 155 (339)
+.+...++++ -.++|||+|=..|+..|.
T Consensus 110 ~~l~~~g~~~~~~~~~~~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 110 EKLRARDGGQAVIDSVDVCAGLSLGEYTALVFAG 143 (343)
T ss_pred HHHHhcCCCcccccCCCeeeeccHHHHHHHHHhC
Confidence 3445555432 367999999988887763
No 378
>PF09754 PAC2: PAC2 family; InterPro: IPR019151 This PAC2 (Proteasome assembly chaperone) family of proteins is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 247 and 307 amino acids in length. These proteins function as a chaperone for the 26S proteasome, which is about 2000 kilodaltons (kDa) in molecular mass and contains one 20S core particle structure and two 19S regulatory caps. The 26S proteasome mediates ubiquitin-dependent proteolysis in eukaryotic cells. A number of studies including very recent ones have revealed that assembly of its 20S catalytic core particle is an ordered process that involves several conserved proteasome assembly chaperones (PACs). Two heterodimeric chaperones, PAC1-PAC2 and PAC3-PAC4, promote the assembly of rings composed of seven alpha subunits [, , , ].; PDB: 3MNF_A 2P90_B 3E35_A 3GAA_D 2WAM_C.
Probab=23.84 E-value=70 Score=25.84 Aligned_cols=34 Identities=9% Similarity=0.049 Sum_probs=25.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEc
Q 045335 111 SRKGGLTTVASTALDVLKLVAQLRITPRVLVGHS 144 (339)
Q Consensus 111 ~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS 144 (339)
+++.+.....++++++.++++..+.++++++|-.
T Consensus 75 ~~p~~~~~~~~f~~~l~~~~~~~g~~~vi~l~g~ 108 (219)
T PF09754_consen 75 RSPIPPGRWYEFAEELLDWIKSFGVKEVIVLGGL 108 (219)
T ss_dssp SSE--SCGHHHHHHHHHHHHHHTTECEEEEEEEE
T ss_pred cCCCCchHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3455668899999999999999999888766544
No 379
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=23.80 E-value=3.6e+02 Score=23.38 Aligned_cols=70 Identities=21% Similarity=0.214 Sum_probs=43.6
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCC--CCC----C-------------------CCCCCHHHHH
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPH--QSR----K-------------------GGLTTVASTA 123 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~--G~S----~-------------------~~~~~~~~~a 123 (339)
.+.+++|-|-.+++.. .+...|++.+ +..++..|-.-. |.+ . ...++..++.
T Consensus 3 ~~~~i~i~GptgsGKt--~la~~la~~~-~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~ 79 (307)
T PRK00091 3 KPKVIVIVGPTASGKT--ALAIELAKRL-NGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQ 79 (307)
T ss_pred CceEEEEECCCCcCHH--HHHHHHHHhC-CCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHH
Confidence 4568888888887754 4556777776 557787776311 111 0 1236788888
Q ss_pred HHHHHHHHHc-CC-CceEEE
Q 045335 124 LDVLKLVAQL-RI-TPRVLV 141 (339)
Q Consensus 124 ~dl~~~l~~l-~~-~~~~lv 141 (339)
++..+.++.. .. +.++|+
T Consensus 80 ~~a~~~i~~i~~~gk~pIlv 99 (307)
T PRK00091 80 RDALAAIADILARGKLPILV 99 (307)
T ss_pred HHHHHHHHHHHhCCCCEEEE
Confidence 8888888754 22 334555
No 380
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=23.78 E-value=3.2e+02 Score=24.74 Aligned_cols=71 Identities=13% Similarity=0.055 Sum_probs=45.9
Q ss_pred HHHHHHHhCCCceEEEEeeCCCCCC----CCC-C---CCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccC
Q 045335 88 FARRLARAYPTWQTCDVMVIPHQSR----KGG-L---TTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAK 159 (339)
Q Consensus 88 ~~~~L~~~~~g~~vi~~D~~G~G~S----~~~-~---~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~ 159 (339)
..+.+... +.-|.-+|..++=.- +.+ . +.++.+++++......-.....+|.|---||..++..++.-|+
T Consensus 67 ~a~al~~~--~Alv~~vd~~~ylaaL~~dd~ecvylisd~Ealsr~~Qr~a~~g~yr~PVl~g~g~Gg~~A~asaaqSp~ 144 (456)
T COG3946 67 RADALLAR--GALVAPVDLGAYLAALGADDNECVYLISDFEALSREAQRAADLGVYRLPVLTGPGQGGTLAYASAAQSPD 144 (456)
T ss_pred hhHHHhhc--CCeeeccccchhhhccccCCCcceEEehhHHHHhHHHHHHhhccCcccceEeecCCCcHHHHHHHhhChh
Confidence 44555555 557777887776322 211 2 4566666666555443333456889999999999999998887
Q ss_pred C
Q 045335 160 P 160 (339)
Q Consensus 160 ~ 160 (339)
.
T Consensus 145 a 145 (456)
T COG3946 145 A 145 (456)
T ss_pred h
Confidence 3
No 381
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=23.75 E-value=3.1e+02 Score=21.97 Aligned_cols=57 Identities=11% Similarity=-0.081 Sum_probs=33.8
Q ss_pred CCeEEEEcCCCCChh---hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 69 PPTAVLLHGILGSRK---NWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~---~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
+.+|+++||-.+..- .-+...+.|.+. |.+|-...++|-|.+- ..+..+++.++|+.
T Consensus 155 ~~pi~~~hG~~D~vvp~~~~~~~~~~L~~~--~~~v~~~~~~g~gH~i-----~~~~~~~~~~~l~~ 214 (216)
T PF02230_consen 155 KTPILIIHGDEDPVVPFEWAEKTAEFLKAA--GANVEFHEYPGGGHEI-----SPEELRDLREFLEK 214 (216)
T ss_dssp TS-EEEEEETT-SSSTHHHHHHHHHHHHCT--T-GEEEEEETT-SSS-------HHHHHHHHHHHHH
T ss_pred CCcEEEEecCCCCcccHHHHHHHHHHHHhc--CCCEEEEEcCCCCCCC-----CHHHHHHHHHHHhh
Confidence 568999999988752 235556667666 5577777777666442 24555666666653
No 382
>PRK00131 aroK shikimate kinase; Reviewed
Probab=23.46 E-value=1.1e+02 Score=23.30 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCeEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEee
Q 045335 69 PPTAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMV 106 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~ 106 (339)
.+.+|++.|.++++.. .+...|++.+ |+.++..|.
T Consensus 3 ~~~~i~l~G~~GsGKs--tla~~La~~l-~~~~~d~d~ 37 (175)
T PRK00131 3 KGPNIVLIGFMGAGKS--TIGRLLAKRL-GYDFIDTDH 37 (175)
T ss_pred CCCeEEEEcCCCCCHH--HHHHHHHHHh-CCCEEEChH
Confidence 4568999999988765 3566777776 666666553
No 383
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=23.20 E-value=1.9e+02 Score=27.03 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=28.4
Q ss_pred HHHHHHHHHHH-HHHcCCCceEEEEE-chhHHHHHHHHHHc
Q 045335 119 VASTALDVLKL-VAQLRITPRVLVGH-SFGGKVVLSMVEQA 157 (339)
Q Consensus 119 ~~~~a~dl~~~-l~~l~~~~~~lvGh-S~Gg~ia~~~a~~~ 157 (339)
++++++|+... +..++..|-.++|| |=||.+|..++.+.
T Consensus 383 Le~fa~d~~~~i~~e~~~~PdlI~GnYsDgnlvA~LLs~~l 423 (550)
T PF00862_consen 383 LEEFADDAEREILAELQGKPDLIIGNYSDGNLVASLLSRKL 423 (550)
T ss_dssp HHHHHHHHHHHHHHHHTS--SEEEEEHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEeccCcchHHHHHHHhhc
Confidence 77889998764 46677778788888 66888888888664
No 384
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=23.20 E-value=5.4e+02 Score=22.97 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHcCCCceEEEEEc-hhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 131 AQLRITPRVLVGHS-FGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 131 ~~l~~~~~~lvGhS-~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+.+.-.++.|+|-. .|+.++..++.. .+..+.++|..
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~------Gvg~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA------GVGTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc------CCCeEEEEeCC
Confidence 34555789999886 577777777654 45578888865
No 385
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=23.03 E-value=2.6e+02 Score=23.87 Aligned_cols=78 Identities=18% Similarity=0.140 Sum_probs=43.8
Q ss_pred EEEEcCCCCCh-hhHHHHHHHHHHhCCCc-------eEEEEeeCCCCCCCCCC--CCHHHHHH--------HHHHHHHHc
Q 045335 72 AVLLHGILGSR-KNWGTFARRLARAYPTW-------QTCDVMVIPHQSRKGGL--TTVASTAL--------DVLKLVAQL 133 (339)
Q Consensus 72 vv~lHG~~~~~-~~~~~~~~~L~~~~~g~-------~vi~~D~~G~G~S~~~~--~~~~~~a~--------dl~~~l~~l 133 (339)
-+++.|.|... ..-+.+...+.+. |. +++.+|..|-=..++.. ..-..+++ +|.++++.+
T Consensus 27 ~iv~~GAGsAg~gia~ll~~~~~~~--G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v 104 (279)
T cd05312 27 RILFLGAGSAGIGIADLIVSAMVRE--GLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAV 104 (279)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHHc--CCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhc
Confidence 44556766654 3444555555543 44 89999999853332222 11122332 455555543
Q ss_pred CCCceEEEEEch-hHHHHHHH
Q 045335 134 RITPRVLVGHSF-GGKVVLSM 153 (339)
Q Consensus 134 ~~~~~~lvGhS~-Gg~ia~~~ 153 (339)
++-+|||-|- ||.+.-+.
T Consensus 105 --~ptvlIG~S~~~g~ft~ev 123 (279)
T cd05312 105 --KPTVLIGLSGVGGAFTEEV 123 (279)
T ss_pred --CCCEEEEeCCCCCCCCHHH
Confidence 4679999995 67654444
No 386
>cd01012 YcaC_related YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them. Multimerisation interface seems not to be conserved in all members.
Probab=22.95 E-value=3.4e+02 Score=20.49 Aligned_cols=46 Identities=17% Similarity=0.019 Sum_probs=31.3
Q ss_pred HHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 125 DVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 125 dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
++.++++..+++.++++|...-.++.......+-. ...-.++-++.
T Consensus 78 ~L~~~L~~~gi~~lii~G~~T~~CV~~Ta~~a~~~---g~~v~v~~Da~ 123 (157)
T cd01012 78 AFRKALKATGRKQVVLAGLETHVCVLQTALDLLEE---GYEVFVVADAC 123 (157)
T ss_pred HHHHHHHhcCCCEEEEEEeeccHHHHHHHHHHHHC---CCEEEEEeeCC
Confidence 67778889999999999999988776655433322 23344445544
No 387
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=22.87 E-value=4.1e+02 Score=23.95 Aligned_cols=73 Identities=10% Similarity=0.089 Sum_probs=46.5
Q ss_pred CCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCC-CCCCCCCHHHHHHHHHHHHHH------cCCCce
Q 045335 69 PPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQS-RKGGLTTVASTALDVLKLVAQ------LRITPR 138 (339)
Q Consensus 69 ~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~-S~~~~~~~~~~a~dl~~~l~~------l~~~~~ 138 (339)
.|.+|+|-+.+.+. .....++..+.+++ |..|+.++.+|+.. |.. ...+...+.+.+.+.. .....+
T Consensus 87 ~P~~i~v~~tC~~~~iGdDi~~v~~~~~~~~-~~~vi~v~t~gf~g~~~~--~G~~~a~~al~~~l~~~~~~~~~~~~~V 163 (406)
T cd01967 87 PPKAIFVYSTCPTGLIGDDIEAVAKEASKEL-GIPVIPVNCEGFRGVSQS--LGHHIANDAILDHLVGTKEPEEKTPYDV 163 (406)
T ss_pred CCCEEEEECCCchhhhccCHHHHHHHHHHhh-CCCEEEEeCCCeeCCccc--HHHHHHHHHHHHHhcCCCCcCCCCCCeE
Confidence 47788888777654 67788888888776 78999999999965 422 2333333333333321 112357
Q ss_pred EEEEEc
Q 045335 139 VLVGHS 144 (339)
Q Consensus 139 ~lvGhS 144 (339)
.|+|..
T Consensus 164 Niig~~ 169 (406)
T cd01967 164 NIIGEY 169 (406)
T ss_pred EEEecc
Confidence 888875
No 388
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=22.76 E-value=2.2e+02 Score=19.57 Aligned_cols=39 Identities=15% Similarity=0.154 Sum_probs=26.1
Q ss_pred CCCeEEEEcC-CCCChhhHHHHHHHHHHhCCCceEEEEee
Q 045335 68 DPPTAVLLHG-ILGSRKNWGTFARRLARAYPTWQTCDVMV 106 (339)
Q Consensus 68 ~~~~vv~lHG-~~~~~~~~~~~~~~L~~~~~g~~vi~~D~ 106 (339)
+++.||.++. |........+.++.+++.+++..++.+|-
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~ 57 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE 57 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC
Confidence 4666666665 44445677777888888776667777763
No 389
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=22.62 E-value=2e+02 Score=20.87 Aligned_cols=39 Identities=18% Similarity=0.097 Sum_probs=27.0
Q ss_pred CCCeEEEEcC--------CCCChhhHHHHHHHHHHhCC-CceEEEEee
Q 045335 68 DPPTAVLLHG--------ILGSRKNWGTFARRLARAYP-TWQTCDVMV 106 (339)
Q Consensus 68 ~~~~vv~lHG--------~~~~~~~~~~~~~~L~~~~~-g~~vi~~D~ 106 (339)
++|.+|.+.+ |.+.-....+.++.+.+.++ +.+++-+|.
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdv 68 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDV 68 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEc
Confidence 4677777777 55555566677788887775 467888874
No 390
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=22.60 E-value=2.3e+02 Score=26.96 Aligned_cols=99 Identities=12% Similarity=0.036 Sum_probs=54.3
Q ss_pred CCeEEEEcCCCCChhhHHHHH------HHHHHhCCCceEEEEeeCC----CC-CCCC----CCCCHHHHHHHHHHHHHHc
Q 045335 69 PPTAVLLHGILGSRKNWGTFA------RRLARAYPTWQTCDVMVIP----HQ-SRKG----GLTTVASTALDVLKLVAQL 133 (339)
Q Consensus 69 ~~~vv~lHG~~~~~~~~~~~~------~~L~~~~~g~~vi~~D~~G----~G-~S~~----~~~~~~~~a~dl~~~l~~l 133 (339)
.-++-+-=|++-+......+. -.|+.-..|=.|+.-.--| || .|.. .......+...+.+.+..
T Consensus 258 ~ipLTLSiGvg~g~~~~~elg~vA~~~L~lAlgRGGDQVvIke~~~k~~fyGG~s~~~ekrTRvRaRvis~al~d~i~e- 336 (655)
T COG3887 258 NIPLTLSIGVGYGENNLIELGEVAQSNLDLALGRGGDQVVIKENNGKVRFYGGKSNPMEKRTRVRARVISTALSDIIKE- 336 (655)
T ss_pred CcceEEEEEeccCcccHHHHHHHHHHhHHHHhccCCceEEEEcCCCceeeeCCCcchhHHhHHHHHHHHHHHHHHHHhh-
Confidence 445666667666554443332 1223222244555543222 33 3322 123344555666666655
Q ss_pred CCCceEEEEE------chhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 134 RITPRVLVGH------SFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 134 ~~~~~~lvGh------S~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
.++|.++|| +.|+++++..-+..-. + .+-+++++.
T Consensus 337 -~d~VfImGHk~pDmDalGsAig~~~~A~~~~---~-~a~~v~dp~ 377 (655)
T COG3887 337 -SDNVFIMGHKFPDMDALGSAIGMQKFASMNN---K-EAFAVLDPE 377 (655)
T ss_pred -cCcEEEEccCCCChHHHHHHHHHHHHHHhcc---c-ccEEEECcc
Confidence 579999999 6799999887665433 1 256667653
No 391
>cd07211 Pat_PNPLA8 Patatin-like phospholipase domain containing protein 8. PNPLA8 is a Ca-independent myocardial phospholipase which maintains mitochondrial integrity. PNPLA8 is also known as iPLA2-gamma. In humans, it is predominantly expressed in heart tissue. iPLA2-gamma can catalyze both phospholipase A1 and A2 reactions (PLA1 and PLA2 respectively). This family includes PNPLA8 (iPLA2-gamma) from Homo sapiens and iPLA2-2 from Mus musculus.
Probab=22.45 E-value=95 Score=26.76 Aligned_cols=17 Identities=18% Similarity=0.194 Sum_probs=15.3
Q ss_pred EEEEEchhHHHHHHHHH
Q 045335 139 VLVGHSFGGKVVLSMVE 155 (339)
Q Consensus 139 ~lvGhS~Gg~ia~~~a~ 155 (339)
.++|-|.||.+|+.++.
T Consensus 44 li~GTStGgiiA~~la~ 60 (308)
T cd07211 44 YICGVSTGAILAFLLGL 60 (308)
T ss_pred EEEecChhHHHHHHHhc
Confidence 57899999999999986
No 392
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=22.26 E-value=6.2e+02 Score=23.26 Aligned_cols=79 Identities=8% Similarity=0.065 Sum_probs=47.5
Q ss_pred eEEEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHH--HHHcCCCceEEEEEchhHH
Q 045335 71 TAVLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKL--VAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 71 ~vv~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~--l~~l~~~~~~lvGhS~Gg~ 148 (339)
++.+=||+...+..|..++..+++.+ |......+..-. ....+++..|+..... .+..+...+++.||-.-=.
T Consensus 49 a~hvnhglr~~s~~~~~~~~~~~~~l-~i~~~~~~~~~~----~~~~~~e~~AR~~Ry~~~~~~~~~~~~l~~aHh~DDq 123 (436)
T PRK10660 49 AIHVHHGLSPNADSWVKHCEQVCQQW-QVPLVVERVQLD----QRGLGIEAAARQARYQAFARTLLPGEVLVTAQHLDDQ 123 (436)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHHHc-CCcEEEEEEecc----CCCCCHHHHHHHHHHHHHHHHHHhCCEEEEcCchHHH
Confidence 45556788877888988888998887 755555444311 1234566666554431 1222224578899988655
Q ss_pred HHHHHH
Q 045335 149 VVLSMV 154 (339)
Q Consensus 149 ia~~~a 154 (339)
+-..+.
T Consensus 124 ~ET~L~ 129 (436)
T PRK10660 124 CETFLL 129 (436)
T ss_pred HHHHHH
Confidence 544443
No 393
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=21.99 E-value=1.8e+02 Score=20.67 Aligned_cols=35 Identities=29% Similarity=0.313 Sum_probs=25.1
Q ss_pred EEEcCCCCChhhHHHHHHHHHHhCCCceEEEEeeCCCC
Q 045335 73 VLLHGILGSRKNWGTFARRLARAYPTWQTCDVMVIPHQ 110 (339)
Q Consensus 73 v~lHG~~~~~~~~~~~~~~L~~~~~g~~vi~~D~~G~G 110 (339)
|++||-++++... ++..+++.. ++.++.+|..-..
T Consensus 1 ill~G~~G~GKT~--l~~~la~~l-~~~~~~i~~~~~~ 35 (132)
T PF00004_consen 1 ILLHGPPGTGKTT--LARALAQYL-GFPFIEIDGSELI 35 (132)
T ss_dssp EEEESSTTSSHHH--HHHHHHHHT-TSEEEEEETTHHH
T ss_pred CEEECcCCCCeeH--HHHHHHhhc-ccccccccccccc
Confidence 6899999888654 455666666 6788888876433
No 394
>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]
Probab=21.81 E-value=1.6e+02 Score=30.96 Aligned_cols=26 Identities=35% Similarity=0.581 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCCceEEEEEchhHH
Q 045335 123 ALDVLKLVAQLRITPRVLVGHSFGGK 148 (339)
Q Consensus 123 a~dl~~~l~~l~~~~~~lvGhS~Gg~ 148 (339)
--.+.+++..+++.+--+||||.|-+
T Consensus 569 QiaLtDlLs~lgi~PDGIvGHS~GEl 594 (2376)
T KOG1202|consen 569 QIALTDLLSCLGIRPDGIVGHSLGEL 594 (2376)
T ss_pred HHHHHHHHHhcCCCCCcccccccchh
Confidence 33567788889999999999999843
No 395
>PRK07877 hypothetical protein; Provisional
Probab=21.46 E-value=1.5e+02 Score=29.15 Aligned_cols=38 Identities=16% Similarity=0.126 Sum_probs=28.0
Q ss_pred HHcCCCceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEecc
Q 045335 131 AQLRITPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDAT 173 (339)
Q Consensus 131 ~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~ 173 (339)
+.|...+|.|+|-+.|+.++..+|... -+-++.++|.-
T Consensus 103 ~~L~~~~V~IvG~GlGs~~a~~LaraG-----vvG~l~lvD~D 140 (722)
T PRK07877 103 ERLGRLRIGVVGLSVGHAIAHTLAAEG-----LCGELRLADFD 140 (722)
T ss_pred HHHhcCCEEEEEecHHHHHHHHHHHcc-----CCCeEEEEcCC
Confidence 445557899999999999999888652 12477777753
No 396
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=21.28 E-value=1.1e+02 Score=25.84 Aligned_cols=37 Identities=5% Similarity=-0.023 Sum_probs=27.6
Q ss_pred CCeEEEEcCCCCCh--hhHHHHHHHHHHhCCCceEEEEeeC
Q 045335 69 PPTAVLLHGILGSR--KNWGTFARRLARAYPTWQTCDVMVI 107 (339)
Q Consensus 69 ~~~vv~lHG~~~~~--~~~~~~~~~L~~~~~g~~vi~~D~~ 107 (339)
.|.||++.|+.+++ ..-..+...|..+ |++|.++.-|
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPR--g~~V~s~~~P 93 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQ--GCQVTSFKAP 93 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCC--eeEEEeCCCC
Confidence 58999999999886 3445666666666 7888888544
No 397
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=21.09 E-value=2.3e+02 Score=26.35 Aligned_cols=68 Identities=10% Similarity=-0.020 Sum_probs=41.4
Q ss_pred CceeeEEeccchhhhhhhhhHHHHHHHHHHHHh----CCCCeeEEEecCCCcccccc--ChhHHHHHHHHhhhc
Q 045335 271 GVHVNFLKAERSLHRWALEDIQRIHAAEELAVD----GGGGVEMHVLEDAGHWVHAD--NPDGLFRILTSSFEG 338 (339)
Q Consensus 271 ~~pvl~i~g~~d~~~~g~~d~~~~~~~~~~~~~----~~~~~~~~~i~~~gH~~~~e--~p~~~~~~i~~fl~~ 338 (339)
+-++++.+|..|.++....-+--.+...+.... .-.-.++..+||.+|..--. .+-....+|.+|.++
T Consensus 353 GGKLI~~HG~aD~~I~p~~ti~YY~~V~~~~g~~~~~v~dF~RlF~vPGm~HC~gG~g~~~~d~l~aL~~WVE~ 426 (474)
T PF07519_consen 353 GGKLILYHGWADPLIPPQGTIDYYERVVARMGGALADVDDFYRLFMVPGMGHCGGGPGPDPFDALTALVDWVEN 426 (474)
T ss_pred CCeEEEEecCCCCccCCCcHHHHHHHHHHhcccccccccceeEEEecCCCcccCCCCCCCCCCHHHHHHHHHhC
Confidence 367888899888555433332222222222211 11236999999999987543 455677888888763
No 398
>COG0622 Predicted phosphoesterase [General function prediction only]
Probab=20.73 E-value=1.6e+02 Score=22.98 Aligned_cols=29 Identities=7% Similarity=0.172 Sum_probs=16.8
Q ss_pred CceEEEEEchhHHHHHHHHHHccCCCCCCceEEEEeccCCC
Q 045335 136 TPRVLVGHSFGGKVVLSMVEQAAKPLARPVRVWVLDATPGK 176 (339)
Q Consensus 136 ~~~~lvGhS~Gg~ia~~~a~~~p~~~~~v~~lv~l~~~~~~ 176 (339)
-.+++.||+. .|. ...+.+++++++....
T Consensus 110 ~Dvli~GHTH-----------~p~-~~~~~~i~~vNPGS~s 138 (172)
T COG0622 110 ADVLIFGHTH-----------KPV-AEKVGGILLVNPGSVS 138 (172)
T ss_pred CCEEEECCCC-----------ccc-EEEECCEEEEcCCCcC
Confidence 5688888874 232 1144457777765433
No 399
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=20.63 E-value=1.3e+02 Score=21.75 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHcCCCceEEEEEchhHHHH
Q 045335 121 STALDVLKLVAQLRITPRVLVGHSFGGKVV 150 (339)
Q Consensus 121 ~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia 150 (339)
+....+.-.+..++.+.++++||+--|++.
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHH
Confidence 455666667788999999999997655554
No 400
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.60 E-value=1.5e+02 Score=25.52 Aligned_cols=35 Identities=17% Similarity=0.273 Sum_probs=27.4
Q ss_pred HHHHHHHHHHcCC----CceEEEEEc--hhHHHHHHHHHHc
Q 045335 123 ALDVLKLVAQLRI----TPRVLVGHS--FGGKVVLSMVEQA 157 (339)
Q Consensus 123 a~dl~~~l~~l~~----~~~~lvGhS--~Gg~ia~~~a~~~ 157 (339)
+..+.+++++.++ +++.+||.| +|-.++..+....
T Consensus 143 p~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~g 183 (301)
T PRK14194 143 PSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAH 183 (301)
T ss_pred HHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCC
Confidence 5667788887654 679999997 8999999997643
No 401
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=20.39 E-value=5.3e+02 Score=24.07 Aligned_cols=60 Identities=10% Similarity=-0.066 Sum_probs=39.0
Q ss_pred CCeEEEEcCCCCC---hhhHHHHHHHHHHhCCCceEEEEeeCC----CCCCCCCC-CCHHHHHHHHHHHHH
Q 045335 69 PPTAVLLHGILGS---RKNWGTFARRLARAYPTWQTCDVMVIP----HQSRKGGL-TTVASTALDVLKLVA 131 (339)
Q Consensus 69 ~~~vv~lHG~~~~---~~~~~~~~~~L~~~~~g~~vi~~D~~G----~G~S~~~~-~~~~~~a~dl~~~l~ 131 (339)
+.+|++++.+... .......+..|.+. |+.|+-++. | +|...... ...+++++.+..++.
T Consensus 180 ~~PvliaPaMN~~M~~npat~~Nl~~L~~~--G~~vi~P~~-g~lA~~g~~G~Grm~e~~~I~~~v~~~~~ 247 (475)
T PRK13982 180 NRPILLAPAMNPLMWNNPATRRNVAQLKRD--GVHMIGPNA-GEMAERGEAGVGRMAEPLEIAAAAEALLR 247 (475)
T ss_pred CCCEEEEEcCCHHHhcCHHHHHHHHHHHHC--CCEEECCCC-CccccCCCcCCCCCCCHHHHHHHHHHHHh
Confidence 4678888866543 23445677888876 778775543 3 45554333 578888888887774
No 402
>PLN02282 phosphoglycerate kinase
Probab=20.29 E-value=6.6e+02 Score=22.83 Aligned_cols=78 Identities=10% Similarity=0.013 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHhCCCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEEchhHHHHHHHHHHccCCCCC
Q 045335 84 NWGTFARRLARAYPTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQLRITPRVLVGHSFGGKVVLSMVEQAAKPLAR 163 (339)
Q Consensus 84 ~~~~~~~~L~~~~~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~~~~ 163 (339)
.-.+.+.+|.++ |-.|+.+-..|.=....+.+|++..++.+.+++. .++.++-..+|..+-.......+.
T Consensus 44 a~lpTI~~l~~~--gakvVl~SHlGRP~g~~~~~SL~~va~~Ls~lL~----~~V~fv~d~~g~~~~~~i~~l~~G---- 113 (401)
T PLN02282 44 AAVPTIKYLMGH--GARVILCSHLGRPKGVTPKYSLKPLVPRLSELLG----VEVVMANDCIGEEVEKLVAELPEG---- 113 (401)
T ss_pred HHHHHHHHHHHC--CCeEEEEecCCCCCCCCcccCHHHHHHHHHHHHC----CCeEECCCCCCHHHHHHHhcCCCC----
Confidence 335667788777 6789998877764333446899999999988885 678888888887666555554443
Q ss_pred CceEEEEecc
Q 045335 164 PVRVWVLDAT 173 (339)
Q Consensus 164 v~~lv~l~~~ 173 (339)
.++++...
T Consensus 114 --~ilLLEN~ 121 (401)
T PLN02282 114 --GVLLLENV 121 (401)
T ss_pred --CEEEEecc
Confidence 56777665
No 403
>COG4551 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=20.28 E-value=2.9e+02 Score=18.98 Aligned_cols=27 Identities=4% Similarity=0.001 Sum_probs=17.1
Q ss_pred CCceEEEEeeCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 045335 97 PTWQTCDVMVIPHQSRKGGLTTVASTALDVLKLVAQ 132 (339)
Q Consensus 97 ~g~~vi~~D~~G~G~S~~~~~~~~~~a~dl~~~l~~ 132 (339)
+|-+|+|.|.| -.++-+--.+.++++.
T Consensus 74 k~kRviCLDIP---------Ddy~yMq~eLi~lLkr 100 (109)
T COG4551 74 KGKRVICLDIP---------DDYEYMQPELIDLLKR 100 (109)
T ss_pred cCCeEEEEeCC---------chHhhcCHHHHHHHHH
Confidence 46799999998 3344444455555543
No 404
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=20.22 E-value=4.7e+02 Score=23.86 Aligned_cols=43 Identities=14% Similarity=0.100 Sum_probs=32.9
Q ss_pred CCeEEEEcCCCCCh---hhHHHHHHHHHHhCCCceEEEEeeCCCCCC
Q 045335 69 PPTAVLLHGILGSR---KNWGTFARRLARAYPTWQTCDVMVIPHQSR 112 (339)
Q Consensus 69 ~~~vv~lHG~~~~~---~~~~~~~~~L~~~~~g~~vi~~D~~G~G~S 112 (339)
+|.+|+|.+.+.+. .....++..+.++. |..|+.++.+|+..+
T Consensus 85 ~p~~I~v~~tC~~~iIGdDi~~v~~~~~~~~-~~~vi~v~t~gf~g~ 130 (430)
T cd01981 85 KPDLIVLTPTCTSSILQEDLQNFVRAAGLSS-KSPVLPLDVNHYRVN 130 (430)
T ss_pred CCCEEEEeCCccHHHHhhCHHHHHHHhhhcc-CCCeEEecCCCccch
Confidence 46688888877654 56677777777655 789999999999766
No 405
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=20.19 E-value=3.5e+02 Score=22.75 Aligned_cols=81 Identities=17% Similarity=0.080 Sum_probs=42.8
Q ss_pred EEEEcCCCCCh-hhHHHHHHHHHHhC-----CCceEEEEeeCCCCCCCCCCCCH--HH---HH------HHHHHHHHHcC
Q 045335 72 AVLLHGILGSR-KNWGTFARRLARAY-----PTWQTCDVMVIPHQSRKGGLTTV--AS---TA------LDVLKLVAQLR 134 (339)
Q Consensus 72 vv~lHG~~~~~-~~~~~~~~~L~~~~-----~g~~vi~~D~~G~G~S~~~~~~~--~~---~a------~dl~~~l~~l~ 134 (339)
-+++.|.|... ..-+.+...+.+.. -.-+++.+|..|-=...++.... .. ++ .+|.++++..
T Consensus 27 riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~- 105 (254)
T cd00762 27 KVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAA- 105 (254)
T ss_pred EEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhh-
Confidence 34556666554 33333444443310 01279999999853332222111 11 22 2455565554
Q ss_pred CCceEEEEEch-hHHHHHHHH
Q 045335 135 ITPRVLVGHSF-GGKVVLSMV 154 (339)
Q Consensus 135 ~~~~~lvGhS~-Gg~ia~~~a 154 (339)
++-+|+|-|- ||.+.-+..
T Consensus 106 -kptvlIG~S~~~g~ft~evv 125 (254)
T cd00762 106 -KPDFLIGVSRVGGAFTPEVI 125 (254)
T ss_pred -CCCEEEEeCCCCCCCCHHHH
Confidence 4779999999 887655544
No 406
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=20.13 E-value=3.4e+02 Score=24.69 Aligned_cols=51 Identities=16% Similarity=0.330 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHH-HHcCCCceEEEEEc-hhHHHHHHHHHHccCCCCCCceEEEEec
Q 045335 116 LTTVASTALDVLKLV-AQLRITPRVLVGHS-FGGKVVLSMVEQAAKPLARPVRVWVLDA 172 (339)
Q Consensus 116 ~~~~~~~a~dl~~~l-~~l~~~~~~lvGhS-~Gg~ia~~~a~~~p~~~~~v~~lv~l~~ 172 (339)
..|+...|-++..-+ ..+..+++.+||-+ ||..++.+++... +..+++++-
T Consensus 158 ~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g------~~~i~IaNR 210 (414)
T COG0373 158 AVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKG------VKKITIANR 210 (414)
T ss_pred ccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCC------CCEEEEEcC
Confidence 467777777766644 34677889999999 9999999888764 336666653
Done!