Query 045338
Match_columns 134
No_of_seqs 116 out of 264
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 21:42:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_m 60S ribosomal protein L 100.0 2.1E-53 7.1E-58 306.8 8.1 92 43-134 1-92 (92)
2 3izc_m 60S ribosomal protein R 100.0 3.2E-53 1.1E-57 306.0 8.0 92 43-134 1-92 (92)
3 4a17_Y RPL37A, 60S ribosomal p 100.0 2.6E-52 9E-57 306.5 8.3 91 43-133 1-91 (103)
4 3cc2_Z 50S ribosomal protein L 100.0 1.6E-49 5.5E-54 296.5 6.7 96 39-134 21-116 (116)
5 3j21_i 50S ribosomal protein L 100.0 3.8E-48 1.3E-52 274.9 6.1 82 43-125 1-82 (83)
6 3jyw_9 60S ribosomal protein L 100.0 4.6E-43 1.6E-47 243.4 2.2 71 53-123 1-71 (72)
7 1vq8_Z 50S ribosomal protein L 100.0 7.7E-42 2.6E-46 240.9 6.7 82 53-134 2-83 (83)
8 1ffk_W Ribosomal protein L37AE 100.0 5.7E-42 2E-46 238.0 3.4 72 52-123 1-72 (73)
9 3j21_g 50S ribosomal protein L 98.6 3.9E-09 1.3E-13 68.8 -0.3 34 68-105 4-37 (51)
10 3j20_Y 30S ribosomal protein S 95.7 0.008 2.7E-07 38.2 2.9 28 79-106 20-47 (50)
11 3ga8_A HTH-type transcriptiona 94.9 0.064 2.2E-06 35.5 5.7 47 80-132 4-66 (78)
12 2k4x_A 30S ribosomal protein S 94.6 0.017 5.7E-07 37.3 2.0 31 76-106 16-46 (55)
13 1d0q_A DNA primase; zinc-bindi 94.5 0.013 4.5E-07 40.7 1.5 51 78-130 37-91 (103)
14 1pft_A TFIIB, PFTFIIBN; N-term 94.4 0.021 7.1E-07 35.0 2.1 32 77-108 4-36 (50)
15 1dl6_A Transcription factor II 94.3 0.02 6.9E-07 36.9 1.9 34 78-111 11-45 (58)
16 1wii_A Hypothetical UPF0222 pr 93.6 0.052 1.8E-06 38.0 3.2 45 75-119 20-70 (85)
17 3u50_C Telomerase-associated p 92.9 0.048 1.6E-06 42.0 2.4 25 80-105 44-68 (172)
18 1l1o_C Replication protein A 7 92.5 0.063 2.1E-06 40.6 2.5 29 80-109 45-75 (181)
19 3o9x_A Uncharacterized HTH-typ 92.2 0.15 5E-06 35.3 3.8 30 80-109 4-49 (133)
20 2au3_A DNA primase; zinc ribbo 91.7 0.056 1.9E-06 45.1 1.4 32 78-112 34-69 (407)
21 1bbo_A Human enhancer-binding 90.7 0.074 2.5E-06 30.5 0.9 30 78-107 1-40 (57)
22 1vd4_A Transcription initiatio 90.2 0.059 2E-06 32.6 0.2 33 76-108 12-51 (62)
23 1nui_A DNA primase/helicase; z 90.1 0.13 4.4E-06 39.7 2.0 26 80-105 16-42 (255)
24 3uk3_C Zinc finger protein 217 90.0 0.1 3.4E-06 29.9 1.1 31 77-107 3-43 (57)
25 4bbr_M Transcription initiatio 90.0 0.19 6.4E-06 41.6 3.1 33 76-108 19-54 (345)
26 1twf_L ABC10-alpha, DNA-direct 90.0 0.058 2E-06 36.4 -0.0 30 75-105 25-54 (70)
27 4gzn_C ZFP-57, zinc finger pro 89.9 0.08 2.7E-06 33.2 0.6 33 76-108 2-44 (60)
28 2drp_A Protein (tramtrack DNA- 89.7 0.077 2.6E-06 31.4 0.4 33 76-108 8-52 (66)
29 4gop_C Putative uncharacterize 89.0 0.18 6.1E-06 42.2 2.3 31 80-111 310-342 (444)
30 2adr_A ADR1; transcription reg 88.3 0.14 4.9E-06 29.6 0.9 30 78-107 2-41 (60)
31 1x6e_A Zinc finger protein 24; 88.0 0.16 5.3E-06 30.8 1.0 32 76-107 12-53 (72)
32 2ds5_A CLPX, ATP-dependent CLP 87.6 0.092 3.1E-06 33.6 -0.3 25 78-102 11-39 (51)
33 1twf_I B12.6, DNA-directed RNA 87.6 0.54 1.9E-05 33.8 3.8 30 79-108 5-38 (122)
34 2ct1_A Transcriptional repress 86.9 0.14 4.8E-06 31.3 0.3 32 76-107 13-56 (77)
35 2lv2_A Insulinoma-associated p 86.7 0.18 6.2E-06 33.6 0.8 31 77-107 27-67 (85)
36 1x5w_A Zinc finger protein 64, 86.6 0.18 6.2E-06 30.3 0.6 32 76-107 7-48 (70)
37 1ovx_A ATP-dependent CLP prote 85.8 0.12 4.1E-06 35.1 -0.5 25 78-102 18-46 (67)
38 1x6h_A Transcriptional repress 85.7 0.19 6.3E-06 30.7 0.4 32 76-107 13-58 (86)
39 2d9h_A Zinc finger protein 692 85.6 0.14 4.8E-06 31.3 -0.2 32 76-107 5-49 (78)
40 2lce_A B-cell lymphoma 6 prote 85.1 0.29 1E-05 29.6 1.1 34 75-108 14-57 (74)
41 2eps_A POZ-, at HOOK-, and zin 84.6 0.11 3.8E-06 30.2 -1.0 32 76-107 10-52 (54)
42 3h0g_L DNA-directed RNA polyme 84.1 0.29 9.9E-06 32.7 0.8 30 75-106 18-48 (63)
43 3k1f_M Transcription initiatio 83.9 0.52 1.8E-05 37.8 2.3 32 76-107 19-53 (197)
44 1llm_C Chimera of ZIF23-GCN4; 83.8 0.34 1.2E-05 30.3 1.0 12 96-107 31-42 (88)
45 1a1h_A QGSR zinc finger peptid 83.6 0.36 1.2E-05 29.7 1.0 32 76-107 32-73 (90)
46 2cot_A Zinc finger protein 435 83.4 0.39 1.3E-05 29.2 1.1 33 76-108 16-58 (77)
47 2xzm_9 RPS31E; ribosome, trans 83.3 0.54 1.8E-05 36.7 2.2 28 79-106 114-141 (189)
48 3h0g_I DNA-directed RNA polyme 83.0 0.59 2E-05 33.2 2.1 31 79-109 5-39 (113)
49 2kmk_A Zinc finger protein GFI 82.8 0.36 1.2E-05 29.0 0.8 33 75-107 26-68 (82)
50 1qyp_A RNA polymerase II; tran 82.6 1.4 4.9E-05 27.4 3.5 31 78-108 15-55 (57)
51 2m0e_A Zinc finger and BTB dom 82.3 0.48 1.6E-05 22.7 1.0 10 78-87 2-11 (29)
52 3k7a_M Transcription initiatio 81.5 0.36 1.2E-05 39.5 0.5 32 76-107 19-53 (345)
53 2ctd_A Zinc finger protein 512 80.7 0.35 1.2E-05 32.0 0.1 34 74-107 30-73 (96)
54 2kvh_A Zinc finger and BTB dom 80.5 0.54 1.8E-05 22.8 0.8 10 78-87 3-12 (27)
55 1klr_A Zinc finger Y-chromosom 80.1 0.66 2.3E-05 22.3 1.1 10 78-87 2-11 (30)
56 2jrp_A Putative cytoplasmic pr 80.0 1.3 4.5E-05 30.8 2.9 34 79-114 3-36 (81)
57 2csh_A Zinc finger protein 297 79.8 0.63 2.2E-05 29.9 1.2 33 76-108 35-77 (110)
58 2con_A RUH-035 protein, NIN on 79.8 0.82 2.8E-05 31.6 1.8 21 76-96 28-48 (79)
59 1ard_A Yeast transcription fac 79.7 0.68 2.3E-05 22.3 1.0 10 78-87 2-11 (29)
60 1rik_A E6APC1 peptide; E6-bind 79.6 0.62 2.1E-05 22.6 0.9 10 78-87 2-11 (29)
61 2gqj_A Zinc finger protein KIA 79.6 0.16 5.4E-06 33.0 -1.8 32 76-107 22-65 (98)
62 3cng_A Nudix hydrolase; struct 79.5 1.2 4E-05 32.2 2.7 25 80-104 5-33 (189)
63 1znf_A 31ST zinc finger from X 79.4 0.68 2.3E-05 22.1 1.0 10 78-87 1-10 (27)
64 2dmd_A Zinc finger protein 64, 79.4 0.65 2.2E-05 28.9 1.1 32 77-108 35-76 (96)
65 2yt9_A Zinc finger-containing 79.3 0.64 2.2E-05 28.9 1.0 32 76-107 33-76 (95)
66 2wbt_A B-129; zinc finger; 2.7 79.2 0.36 1.2E-05 32.1 -0.2 35 73-107 69-111 (129)
67 2lvu_A Zinc finger and BTB dom 80.5 0.39 1.3E-05 23.2 0.0 11 78-88 2-12 (26)
68 2dlq_A GLI-kruppel family memb 79.2 0.58 2E-05 30.2 0.8 32 76-107 64-105 (124)
69 1paa_A Yeast transcription fac 79.0 0.72 2.5E-05 22.5 1.0 10 78-87 2-11 (30)
70 2m0f_A Zinc finger and BTB dom 78.9 0.64 2.2E-05 22.3 0.8 9 78-86 2-10 (29)
71 2kvf_A Zinc finger and BTB dom 78.8 0.67 2.3E-05 22.5 0.8 10 78-87 3-12 (28)
72 1p7a_A BF3, BKLF, kruppel-like 78.6 0.72 2.5E-05 23.9 1.0 13 76-88 9-21 (37)
73 2kvg_A Zinc finger and BTB dom 78.3 0.52 1.8E-05 23.1 0.3 10 78-87 3-12 (27)
74 2kfq_A FP1; protein, de novo p 78.0 0.79 2.7E-05 23.5 1.0 10 78-87 2-11 (32)
75 1f2i_G Fusion of N-terminal 17 77.6 0.73 2.5E-05 27.5 0.9 32 76-107 17-60 (73)
76 2m0d_A Zinc finger and BTB dom 76.7 0.79 2.7E-05 22.0 0.7 11 77-87 2-12 (30)
77 3qt1_I DNA-directed RNA polyme 76.5 0.91 3.1E-05 33.5 1.3 33 77-109 23-59 (133)
78 2lvt_A Zinc finger and BTB dom 78.1 0.53 1.8E-05 23.0 0.0 11 78-88 2-12 (29)
79 2ctu_A Zinc finger protein 483 75.9 0.19 6.6E-06 29.6 -2.1 32 77-108 17-51 (73)
80 2lt7_A Transcriptional regulat 75.5 0.71 2.4E-05 32.4 0.5 45 62-108 36-90 (133)
81 2ghf_A ZHX1, zinc fingers and 75.3 0.92 3.1E-05 31.0 1.0 32 76-107 16-61 (102)
82 2elt_A Zinc finger protein 406 74.6 1 3.5E-05 23.1 0.9 11 77-87 8-18 (36)
83 2els_A Zinc finger protein 406 74.6 0.95 3.2E-05 23.4 0.7 12 76-87 7-18 (36)
84 2elr_A Zinc finger protein 406 74.5 1.1 3.8E-05 22.9 1.0 12 76-87 7-18 (36)
85 1rim_A E6APC2 peptide; E6-bind 74.5 1.1 3.8E-05 23.2 1.0 10 78-87 2-11 (33)
86 2lvr_A Zinc finger and BTB dom 76.4 0.64 2.2E-05 22.6 0.0 12 77-88 2-13 (30)
87 2elx_A Zinc finger protein 406 74.0 1.1 3.6E-05 22.7 0.8 11 77-87 6-16 (35)
88 2elp_A Zinc finger protein 406 74.0 1.1 3.7E-05 23.3 0.9 11 77-87 8-18 (37)
89 2lt7_A Transcriptional regulat 72.9 1.1 3.9E-05 31.3 1.1 31 76-106 76-122 (133)
90 1srk_A Zinc finger protein ZFP 72.9 1.2 4E-05 22.8 0.8 12 77-88 6-17 (35)
91 3u5c_f 40S ribosomal protein S 72.6 1.8 6.2E-05 32.1 2.1 31 77-107 117-149 (152)
92 2i13_A AART; DNA binding, zinc 72.6 1.2 3.9E-05 31.4 1.0 10 97-106 134-143 (190)
93 2elq_A Zinc finger protein 406 71.9 1.3 4.4E-05 22.8 0.9 13 76-88 7-19 (36)
94 2elv_A Zinc finger protein 406 71.7 1.3 4.4E-05 22.8 0.8 13 76-88 7-19 (36)
95 2elm_A Zinc finger protein 406 71.7 1.2 4.1E-05 23.5 0.7 12 77-88 8-19 (37)
96 4esj_A Type-2 restriction enzy 71.3 2 6.9E-05 35.6 2.3 35 78-112 34-85 (257)
97 2elo_A Zinc finger protein 406 71.1 1.1 3.8E-05 23.2 0.5 11 77-87 8-18 (37)
98 2ee8_A Protein ODD-skipped-rel 69.3 1 3.5E-05 28.6 0.1 32 76-107 43-84 (106)
99 2ytb_A Zinc finger protein 32; 67.8 1.8 6.3E-05 22.9 1.0 13 76-88 9-21 (42)
100 2eos_A B-cell lymphoma 6 prote 66.8 2.1 7.1E-05 22.8 1.0 13 76-88 9-21 (42)
101 1k81_A EIF-2-beta, probable tr 66.5 5.1 0.00017 23.5 2.8 27 80-106 2-31 (36)
102 1njq_A Superman protein; zinc- 66.4 1.8 6.2E-05 22.8 0.7 12 77-88 5-16 (39)
103 2epr_A POZ-, at HOOK-, and zin 66.3 2 7E-05 23.8 1.0 11 76-86 38-48 (48)
104 2wbs_A Krueppel-like factor 4; 66.1 2 7E-05 26.1 1.0 31 77-107 34-76 (89)
105 1wjp_A Zinc finger protein 295 65.9 0.91 3.1E-05 29.2 -0.7 31 77-107 41-80 (107)
106 2epv_A Zinc finger protein 268 65.8 2 6.8E-05 23.3 0.8 13 76-88 10-22 (44)
107 2enf_A Zinc finger protein 347 65.4 2.4 8.1E-05 23.1 1.1 13 76-88 10-22 (46)
108 2yte_A Zinc finger protein 473 65.4 2.3 7.8E-05 22.5 1.0 12 76-87 8-19 (42)
109 2jne_A Hypothetical protein YF 65.4 5.3 0.00018 29.1 3.2 36 77-114 31-66 (101)
110 1fv5_A First zinc finger of U- 65.1 1.6 5.3E-05 25.0 0.3 14 75-88 5-18 (36)
111 2eq1_A Zinc finger protein 347 65.0 2.2 7.6E-05 23.2 0.9 13 76-88 10-22 (46)
112 2yu5_A Zinc finger protein 473 65.0 2.1 7.3E-05 23.0 0.9 13 76-88 10-22 (44)
113 2epc_A Zinc finger protein 32; 64.4 2.2 7.6E-05 22.5 0.8 11 77-87 10-20 (42)
114 2en7_A Zinc finger protein 268 64.0 2.4 8.2E-05 22.6 1.0 13 76-88 10-22 (44)
115 2yti_A Zinc finger protein 347 64.0 2.5 8.5E-05 23.0 1.0 13 76-88 10-22 (46)
116 2ept_A Zinc finger protein 32; 63.9 2.3 7.8E-05 22.6 0.8 13 76-88 8-20 (41)
117 2el5_A Zinc finger protein 268 63.6 2 6.9E-05 22.8 0.6 11 77-87 9-19 (42)
118 2eon_A ZFP-95, zinc finger pro 63.4 2.7 9.3E-05 23.0 1.1 13 76-88 10-22 (46)
119 2en2_A B-cell lymphoma 6 prote 63.3 2.2 7.7E-05 22.6 0.7 11 77-87 10-20 (42)
120 2emi_A Zinc finger protein 484 63.3 2.4 8.1E-05 23.1 0.8 13 76-88 10-22 (46)
121 2eof_A Zinc finger protein 268 63.3 2.3 7.7E-05 22.7 0.7 13 76-88 10-22 (44)
122 2eoh_A Zinc finger protein 28 63.2 2.7 9.1E-05 22.9 1.1 13 76-88 10-22 (46)
123 2emz_A ZFP-95, zinc finger pro 63.0 2.7 9.2E-05 22.9 1.1 13 76-88 10-22 (46)
124 2ytp_A Zinc finger protein 484 62.9 2.4 8.3E-05 23.1 0.8 13 76-88 10-22 (46)
125 2emj_A Zinc finger protein 28 62.9 2.4 8.4E-05 23.1 0.9 13 76-88 10-22 (46)
126 2eq2_A Zinc finger protein 347 62.5 2.8 9.4E-05 22.8 1.0 13 76-88 10-22 (46)
127 2ep1_A Zinc finger protein 484 62.5 2.8 9.6E-05 22.7 1.1 13 76-88 10-22 (46)
128 2en3_A ZFP-95, zinc finger pro 62.4 2.5 8.5E-05 23.0 0.8 13 76-88 10-22 (46)
129 2ytf_A Zinc finger protein 268 62.4 2.5 8.6E-05 22.9 0.8 13 76-88 10-22 (46)
130 2em4_A Zinc finger protein 28 62.1 2.6 8.8E-05 23.0 0.8 13 76-88 10-22 (46)
131 2eoy_A Zinc finger protein 473 62.0 2.6 8.8E-05 23.0 0.8 13 76-88 10-22 (46)
132 2eov_A Zinc finger protein 484 61.9 3 0.0001 22.5 1.1 13 76-88 10-22 (46)
133 2eow_A Zinc finger protein 347 61.8 2.5 8.7E-05 22.8 0.8 13 76-88 10-22 (46)
134 2emg_A Zinc finger protein 484 61.6 2.9 0.0001 22.7 1.0 13 76-88 10-22 (46)
135 2yto_A Zinc finger protein 484 61.5 2.7 9.1E-05 22.9 0.8 13 76-88 10-22 (46)
136 2emb_A Zinc finger protein 473 61.4 2.6 8.7E-05 22.7 0.7 12 77-88 11-22 (44)
137 2eoj_A Zinc finger protein 268 61.3 2.2 7.6E-05 22.9 0.5 12 76-87 10-21 (44)
138 2yth_A Zinc finger protein 224 61.3 3.1 0.0001 22.7 1.1 13 76-88 10-22 (46)
139 2yts_A Zinc finger protein 484 61.2 2.7 9.3E-05 22.7 0.8 13 76-88 10-22 (46)
140 2enh_A Zinc finger protein 28 60.9 3 0.0001 22.7 1.0 13 76-88 10-22 (46)
141 2eoz_A Zinc finger protein 473 60.6 2.2 7.4E-05 23.3 0.3 13 76-88 10-22 (46)
142 2eop_A Zinc finger protein 268 60.5 3.1 0.00011 22.4 1.0 13 76-88 10-22 (46)
143 2eom_A ZFP-95, zinc finger pro 60.4 3.2 0.00011 22.7 1.1 13 76-88 10-22 (46)
144 2jp9_A Wilms tumor 1; DNA bind 60.4 2.7 9.1E-05 26.8 0.8 33 75-107 63-107 (119)
145 2yrj_A Zinc finger protein 473 60.4 2.9 9.8E-05 22.6 0.8 13 76-88 10-22 (46)
146 2em6_A Zinc finger protein 224 60.1 3.4 0.00012 22.5 1.1 13 76-88 10-22 (46)
147 2ep3_A Zinc finger protein 484 60.1 2.9 9.9E-05 22.7 0.8 13 76-88 10-22 (46)
148 1ubd_C Protein (YY1 zinc finge 59.8 2.7 9.3E-05 27.2 0.8 34 75-108 31-76 (124)
149 2emk_A Zinc finger protein 28 59.4 3.5 0.00012 22.4 1.1 13 76-88 10-22 (46)
150 2em3_A Zinc finger protein 28 59.4 3 0.0001 22.6 0.8 13 76-88 10-22 (46)
151 2eq0_A Zinc finger protein 347 59.3 2.7 9.2E-05 22.8 0.6 13 76-88 10-22 (46)
152 2eou_A Zinc finger protein 473 59.2 3.2 0.00011 22.3 0.9 12 76-87 10-21 (44)
153 2eq3_A Zinc finger protein 347 59.1 2.5 8.7E-05 22.8 0.5 12 76-87 10-21 (46)
154 1gh9_A 8.3 kDa protein (gene M 58.9 4.7 0.00016 27.1 1.9 52 78-131 4-57 (71)
155 2ema_A Zinc finger protein 347 58.9 3.1 0.00011 22.5 0.8 13 76-88 10-22 (46)
156 2ytn_A Zinc finger protein 347 58.7 3.5 0.00012 22.3 1.0 13 76-88 10-22 (46)
157 2en9_A Zinc finger protein 28 58.7 3.5 0.00012 22.4 1.0 13 76-88 10-22 (46)
158 2eor_A Zinc finger protein 224 58.6 3 0.0001 22.5 0.7 13 76-88 10-22 (46)
159 2eoq_A Zinc finger protein 224 58.5 3.6 0.00012 22.3 1.1 13 76-88 10-22 (46)
160 2eq4_A Zinc finger protein 224 58.5 3.4 0.00012 22.3 0.9 13 76-88 10-22 (46)
161 2eoo_A ZFP-95, zinc finger pro 58.4 3.2 0.00011 22.6 0.8 13 76-88 10-22 (46)
162 2epw_A Zinc finger protein 268 58.4 3.2 0.00011 22.4 0.8 13 76-88 10-22 (46)
163 2em2_A Zinc finger protein 28 58.2 3.3 0.00011 22.5 0.8 13 76-88 10-22 (46)
164 1yui_A GAGA-factor; complex (D 58.2 3.1 0.00011 23.7 0.7 12 76-87 22-33 (54)
165 2ytj_A Zinc finger protein 484 58.2 3.3 0.00011 22.4 0.8 13 76-88 10-22 (46)
166 3iuf_A Zinc finger protein UBI 58.2 3 0.0001 23.5 0.7 13 76-88 5-17 (48)
167 2epu_A Zinc finger protein 32; 58.2 2.5 8.6E-05 22.9 0.3 12 76-87 10-21 (45)
168 2el4_A Zinc finger protein 268 58.2 3.3 0.00011 22.3 0.9 13 76-88 10-22 (46)
169 3pwf_A Rubrerythrin; non heme 58.1 3.9 0.00013 30.8 1.5 28 60-87 116-147 (170)
170 2epx_A Zinc finger protein 28 58.1 3.8 0.00013 22.1 1.1 13 76-88 10-22 (47)
171 2ely_A Zinc finger protein 224 58.0 3.7 0.00013 22.3 1.0 13 76-88 10-22 (46)
172 1lko_A Rubrerythrin all-iron(I 57.9 7.7 0.00026 29.3 3.1 18 91-108 150-167 (191)
173 2em0_A Zinc finger protein 224 57.8 3.7 0.00013 22.2 1.0 13 76-88 10-22 (46)
174 2eme_A Zinc finger protein 473 57.8 3.4 0.00012 22.3 0.8 13 76-88 10-22 (46)
175 2emh_A Zinc finger protein 484 57.7 3.2 0.00011 22.5 0.7 13 76-88 10-22 (46)
176 2em9_A Zinc finger protein 224 57.7 3.4 0.00012 22.3 0.8 13 76-88 10-22 (46)
177 2yrm_A B-cell lymphoma 6 prote 57.6 3.8 0.00013 22.1 1.0 13 76-88 8-20 (43)
178 2epz_A Zinc finger protein 28 57.5 3.6 0.00012 22.3 0.9 13 76-88 10-22 (46)
179 2ytr_A Zinc finger protein 347 57.4 3.6 0.00012 22.2 0.9 13 76-88 10-22 (46)
180 2ytq_A Zinc finger protein 268 57.2 4 0.00014 22.1 1.1 13 76-88 10-22 (46)
181 1vk6_A NADH pyrophosphatase; 1 57.2 5.7 0.0002 31.4 2.4 27 79-105 108-134 (269)
182 2ene_A Zinc finger protein 347 57.2 3.5 0.00012 22.3 0.8 13 76-88 10-22 (46)
183 2em7_A Zinc finger protein 224 57.2 3.5 0.00012 22.3 0.8 13 76-88 10-22 (46)
184 2eml_A Zinc finger protein 28 57.1 3.5 0.00012 22.3 0.8 13 76-88 10-22 (46)
185 2emy_A Zinc finger protein 268 57.0 3.5 0.00012 22.3 0.8 13 76-88 10-22 (46)
186 2emf_A Zinc finger protein 484 56.8 3.6 0.00012 22.4 0.8 13 76-88 10-22 (46)
187 2ytm_A Zinc finger protein 28 56.6 3.8 0.00013 22.4 0.9 13 76-88 10-22 (46)
188 2elz_A Zinc finger protein 224 56.6 4.2 0.00014 22.1 1.1 13 76-88 10-22 (46)
189 1yuz_A Nigerythrin; rubrythrin 56.5 2.5 8.6E-05 32.5 0.2 25 77-104 170-194 (202)
190 2emx_A Zinc finger protein 268 56.2 3.8 0.00013 22.0 0.9 13 76-88 8-20 (44)
191 2enc_A Zinc finger protein 224 56.1 3.7 0.00013 22.2 0.8 13 76-88 10-22 (46)
192 2ytg_A ZFP-95, zinc finger pro 56.1 3.5 0.00012 22.3 0.7 13 76-88 10-22 (46)
193 2dlk_A Novel protein; ZF-C2H2 55.7 3 0.0001 24.9 0.4 11 96-106 68-78 (79)
194 2emp_A Zinc finger protein 347 55.5 3.9 0.00013 22.1 0.8 13 76-88 10-22 (46)
195 2eox_A Zinc finger protein 473 55.3 3 0.0001 22.4 0.3 11 77-87 11-21 (44)
196 2el6_A Zinc finger protein 268 55.2 4 0.00014 22.2 0.9 13 76-88 10-22 (46)
197 2yu8_A Zinc finger protein 347 55.1 4 0.00014 22.1 0.8 13 76-88 10-22 (46)
198 2em5_A ZFP-95, zinc finger pro 55.1 4 0.00014 22.2 0.8 13 76-88 10-22 (46)
199 1lko_A Rubrerythrin all-iron(I 55.0 8 0.00027 29.2 2.8 41 62-104 133-179 (191)
200 3a43_A HYPD, hydrogenase nicke 54.9 5.8 0.0002 28.9 1.9 51 54-110 34-84 (139)
201 2ep2_A Zinc finger protein 484 54.7 4.1 0.00014 22.1 0.8 13 76-88 10-22 (46)
202 2ytt_A Zinc finger protein 473 54.5 4.6 0.00016 21.9 1.0 13 76-88 10-22 (46)
203 2js4_A UPF0434 protein BB2007; 54.5 8.6 0.00029 25.5 2.6 28 79-106 9-36 (70)
204 2em8_A Zinc finger protein 224 54.5 4.1 0.00014 22.1 0.8 13 76-88 10-22 (46)
205 2emm_A ZFP-95, zinc finger pro 54.2 4.2 0.00014 21.9 0.8 13 76-88 10-22 (46)
206 1x0t_A Ribonuclease P protein 54.2 7.1 0.00024 27.9 2.3 51 55-105 39-103 (120)
207 2jr6_A UPF0434 protein NMA0874 53.7 8.7 0.0003 25.4 2.5 28 79-106 9-36 (68)
208 2ytk_A Zinc finger protein 347 53.4 4.4 0.00015 21.9 0.8 13 76-88 10-22 (46)
209 2yso_A ZFP-95, zinc finger pro 53.2 4.2 0.00014 22.0 0.7 13 76-88 10-22 (46)
210 2en8_A Zinc finger protein 224 53.2 4.2 0.00014 21.9 0.7 13 76-88 10-22 (46)
211 2hf1_A Tetraacyldisaccharide-1 53.2 8.6 0.00029 25.4 2.4 28 79-106 9-36 (68)
212 4e2x_A TCAB9; kijanose, tetron 52.9 28 0.00096 27.6 5.8 31 78-109 12-66 (416)
213 2ytd_A Zinc finger protein 473 52.7 4.6 0.00016 21.8 0.8 13 76-88 10-22 (46)
214 1tfi_A Transcriptional elongat 52.6 19 0.00064 22.3 3.8 31 76-106 7-47 (50)
215 2ysp_A Zinc finger protein 224 52.4 3.5 0.00012 22.3 0.3 13 76-88 10-22 (46)
216 2pk7_A Uncharacterized protein 52.3 8.4 0.00029 25.5 2.2 29 78-106 8-36 (69)
217 2k3r_A Ribonuclease P protein 52.0 8.5 0.00029 27.8 2.4 50 56-105 35-98 (123)
218 2ep0_A Zinc finger protein 28 51.5 4.8 0.00017 21.7 0.8 13 76-88 10-22 (46)
219 2iyb_E Testin, TESS, TES; LIM 51.3 9.3 0.00032 23.3 2.2 34 80-113 4-49 (65)
220 2epq_A POZ-, at HOOK-, and zin 51.2 3.6 0.00012 22.3 0.2 13 76-88 8-20 (45)
221 2ej4_A Zinc finger protein ZIC 51.0 1.6 5.4E-05 27.1 -1.4 11 97-107 63-73 (95)
222 1p91_A Ribosomal RNA large sub 50.6 8.1 0.00028 28.4 2.2 24 79-104 3-26 (269)
223 3po3_S Transcription elongatio 50.4 7.1 0.00024 29.7 1.9 29 78-106 137-175 (178)
224 1sp2_A SP1F2; zinc finger, tra 50.2 6.2 0.00021 19.3 1.1 10 78-87 2-13 (31)
225 1l8d_A DNA double-strand break 49.9 4.6 0.00016 27.5 0.7 11 78-88 47-57 (112)
226 2en6_A Zinc finger protein 268 49.7 4.2 0.00014 22.0 0.3 13 76-88 10-22 (46)
227 2eoe_A Zinc finger protein 347 49.7 4.5 0.00015 21.8 0.5 12 76-87 10-21 (46)
228 2d74_B Translation initiation 49.2 6.5 0.00022 29.7 1.4 44 62-105 87-134 (148)
229 2bzw_B BCL2-antagonist of cell 48.7 4.2 0.00014 23.3 0.3 17 58-74 9-25 (27)
230 3f6q_B LIM and senescent cell 48.2 11 0.00038 22.6 2.2 34 79-112 12-55 (72)
231 2en1_A Zinc finger protein 224 47.5 4.7 0.00016 21.8 0.3 13 76-88 10-22 (46)
232 2kdx_A HYPA, hydrogenase/ureas 46.3 20 0.00068 24.9 3.5 51 54-110 36-87 (119)
233 1x4s_A Protein FON, zinc finge 46.1 4.2 0.00014 26.8 -0.0 13 75-87 23-35 (59)
234 2ab3_A ZNF29; zinc finger prot 45.4 5.5 0.00019 18.8 0.4 6 101-106 9-14 (29)
235 1wfe_A Riken cDNA 2310008M20 p 44.3 12 0.00041 25.8 2.1 32 75-111 22-55 (86)
236 2eod_A TNF receptor-associated 43.9 9.5 0.00033 22.4 1.3 31 77-107 9-48 (66)
237 2jny_A Uncharacterized BCR; st 43.8 14 0.00048 24.4 2.3 29 78-106 10-38 (67)
238 2fc7_A ZZZ3 protein; structure 43.4 2.4 8.3E-05 28.8 -1.6 39 62-104 5-44 (82)
239 1pqv_S STP-alpha, transcriptio 43.3 18 0.00062 29.4 3.3 29 78-106 268-306 (309)
240 2zkr_2 60S ribosomal protein L 43.2 7.1 0.00024 28.1 0.8 23 80-105 18-40 (97)
241 1nee_A EIF-2-beta, probable tr 42.8 9.5 0.00033 28.4 1.5 41 65-105 88-132 (138)
242 2epp_A POZ-, at HOOK-, and zin 42.8 7.9 0.00027 24.7 0.9 14 75-88 10-23 (66)
243 1zfd_A SWI5; DNA binding motif 42.6 9.2 0.00032 18.7 1.0 11 77-87 2-14 (32)
244 2akl_A PHNA-like protein PA012 42.5 14 0.0005 28.0 2.4 33 74-107 23-55 (138)
245 3htk_C E3 SUMO-protein ligase 42.5 30 0.001 28.5 4.5 56 75-130 178-254 (267)
246 1wjv_A Cell growth regulating 42.2 15 0.00052 25.4 2.3 37 79-115 11-56 (79)
247 4glx_A DNA ligase; inhibitor, 41.1 8.8 0.0003 34.4 1.2 25 77-101 404-428 (586)
248 1h7b_A Anaerobic ribonucleotid 41.0 5.9 0.0002 35.5 0.1 40 62-104 518-566 (605)
249 2e9h_A EIF-5, eukaryotic trans 40.7 21 0.00073 27.2 3.2 45 62-106 86-136 (157)
250 2j7j_A Transcription factor II 40.1 7.6 0.00026 23.0 0.5 32 75-107 28-72 (85)
251 1kbe_A Kinase suppressor of RA 39.0 21 0.00071 22.1 2.4 23 79-106 15-37 (49)
252 1a7i_A QCRP2 (LIM1); LIM domai 39.0 29 0.00099 21.7 3.2 36 78-113 7-51 (81)
253 2yqq_A Zinc finger HIT domain- 38.2 8.6 0.00029 24.9 0.5 12 76-87 21-32 (56)
254 2xqn_T Testin, TESS; metal-bin 38.0 15 0.00051 24.8 1.8 35 79-113 64-110 (126)
255 1va1_A Transcription factor SP 37.9 9.2 0.00031 19.8 0.5 11 77-87 7-19 (37)
256 2d9k_A FLN29 gene product; zin 37.9 9.5 0.00033 23.9 0.7 14 74-87 39-52 (75)
257 2epa_A Krueppel-like factor 10 37.7 8.4 0.00029 22.7 0.4 33 75-107 14-60 (72)
258 2lcq_A Putative toxin VAPC6; P 37.4 13 0.00044 26.9 1.4 10 78-87 132-141 (165)
259 1dvp_A HRS, hepatocyte growth 37.0 14 0.00046 28.1 1.6 28 79-110 162-191 (220)
260 3u6p_A Formamidopyrimidine-DNA 36.9 19 0.00066 28.7 2.5 24 80-103 247-272 (273)
261 2eln_A Zinc finger protein 406 36.8 10 0.00036 21.4 0.7 13 76-88 7-21 (38)
262 1yuz_A Nigerythrin; rubrythrin 36.8 15 0.00053 28.1 1.8 15 94-108 169-183 (202)
263 3v2d_5 50S ribosomal protein L 35.6 9.6 0.00033 24.7 0.4 20 79-103 31-50 (60)
264 1x4k_A Skeletal muscle LIM-pro 35.5 23 0.00079 21.4 2.2 34 80-113 7-50 (72)
265 2qkd_A Zinc finger protein ZPR 35.4 34 0.0012 29.5 3.9 34 80-113 14-62 (404)
266 4adn_A FAR1; antibiotic resist 35.4 21 0.00072 28.7 2.5 44 47-112 148-191 (222)
267 2owa_A Arfgap-like finger doma 34.9 19 0.00065 26.7 2.0 40 64-103 22-63 (138)
268 1k3x_A Endonuclease VIII; hydr 34.9 22 0.00075 28.1 2.5 24 80-103 236-261 (262)
269 2g2k_A EIF-5, eukaryotic trans 34.7 25 0.00086 27.1 2.7 45 61-105 78-128 (170)
270 1k82_A Formamidopyrimidine-DNA 34.6 22 0.00076 28.2 2.5 25 79-103 241-267 (268)
271 2ebt_A Krueppel-like factor 5; 34.6 14 0.00047 22.7 1.0 12 76-87 73-84 (100)
272 2xzf_A Formamidopyrimidine-DNA 34.6 22 0.00076 28.2 2.5 26 79-104 243-270 (271)
273 1x3h_A Leupaxin; paxillin fami 34.5 21 0.00073 22.1 2.0 34 80-113 17-58 (80)
274 1wyh_A SLIM 2, skeletal muscle 34.5 12 0.0004 22.8 0.7 35 79-113 6-50 (72)
275 1x63_A Skeletal muscle LIM-pro 34.0 21 0.00072 22.2 1.9 34 80-113 17-60 (82)
276 1g47_A Pinch protein; LIM doma 33.9 17 0.00056 22.4 1.3 36 78-113 11-56 (77)
277 2d8z_A Four and A half LIM dom 33.9 25 0.00087 21.2 2.2 35 79-113 6-48 (70)
278 1ee8_A MUTM (FPG) protein; bet 33.3 24 0.00081 28.1 2.5 26 79-104 236-263 (266)
279 1bhi_A CRE-BP1, ATF-2; CRE bin 32.7 14 0.00048 18.8 0.7 11 77-87 5-17 (38)
280 2dmi_A Teashirt homolog 3; zin 32.6 16 0.00054 23.2 1.1 11 77-87 79-89 (115)
281 2zjr_Z 50S ribosomal protein L 32.5 12 0.00042 24.2 0.6 19 80-103 32-50 (60)
282 3alr_A Nanos protein; zinc-fin 31.9 14 0.00049 27.0 0.9 11 78-88 71-81 (106)
283 1wfp_A Zinc finger (AN1-like) 31.7 12 0.00041 25.7 0.4 51 52-110 2-52 (74)
284 2cu8_A Cysteine-rich protein 2 31.4 33 0.0011 21.1 2.5 35 79-113 10-53 (76)
285 2cur_A Skeletal muscle LIM-pro 31.1 23 0.0008 21.4 1.7 35 79-113 6-48 (69)
286 1iml_A CRIP, cysteine rich int 31.0 32 0.0011 21.2 2.4 34 80-113 2-44 (76)
287 1joc_A EEA1, early endosomal a 30.7 21 0.00071 25.5 1.6 27 80-110 71-99 (125)
288 2d8y_A Eplin protein; LIM doma 30.5 35 0.0012 21.9 2.6 36 78-113 15-59 (91)
289 3na7_A HP0958; flagellar bioge 30.5 39 0.0013 26.2 3.2 42 48-90 189-234 (256)
290 3w0f_A Endonuclease 8-like 3; 30.4 25 0.00086 28.8 2.2 26 80-105 253-282 (287)
291 2dlo_A Thyroid receptor-intera 30.2 26 0.0009 21.9 1.9 35 79-113 16-58 (81)
292 1x6f_A Zinc finger protein 462 30.0 16 0.00055 23.7 0.8 13 76-88 23-35 (88)
293 4dvc_A Thiol:disulfide interch 29.9 7.7 0.00026 26.5 -0.8 15 72-86 24-38 (184)
294 2i5o_A DNA polymerase ETA; zin 29.9 14 0.00049 22.2 0.5 11 97-107 10-20 (39)
295 1wg2_A Zinc finger (AN1-like) 29.6 15 0.0005 24.5 0.6 31 75-110 12-42 (64)
296 2dkt_A Ring finger and CHY zin 29.0 39 0.0013 25.4 2.9 18 92-109 94-111 (143)
297 2yw8_A RUN and FYVE domain-con 28.7 26 0.00088 23.0 1.7 27 79-109 20-48 (82)
298 2olm_A Nucleoporin-like protei 28.7 26 0.00087 25.9 1.8 30 74-103 21-52 (140)
299 1vfy_A Phosphatidylinositol-3- 28.6 26 0.0009 22.5 1.7 27 80-110 13-41 (73)
300 1qxf_A GR2, 30S ribosomal prot 28.4 36 0.0012 22.9 2.3 28 80-107 9-37 (66)
301 3flo_B DNA polymerase alpha ca 28.2 51 0.0017 25.7 3.5 29 78-106 22-59 (206)
302 1x64_A Alpha-actinin-2 associa 28.1 22 0.00076 22.8 1.3 36 78-113 25-68 (89)
303 2d8x_A Protein pinch; LIM doma 28.0 33 0.0011 20.7 2.0 35 79-113 6-48 (70)
304 2lk0_A RNA-binding protein 5; 27.9 24 0.00081 19.9 1.2 12 94-105 3-14 (32)
305 3gn3_A Putative protein-disulf 27.9 6.7 0.00023 28.8 -1.5 14 74-87 19-32 (182)
306 6rxn_A Rubredoxin; electron tr 27.9 26 0.00087 21.6 1.4 12 96-107 4-15 (46)
307 3m7n_A Putative uncharacterize 27.7 29 0.00099 25.8 2.0 24 80-105 142-165 (179)
308 1x4u_A Zinc finger, FYVE domai 27.6 28 0.00095 22.9 1.7 27 79-109 15-43 (84)
309 2rpc_A Zinc finger protein ZIC 27.6 19 0.00064 24.1 0.8 32 76-107 88-133 (155)
310 1vq8_3 50S ribosomal protein L 27.5 16 0.00056 25.9 0.6 43 49-101 45-87 (92)
311 2owo_A DNA ligase; protein-DNA 27.1 24 0.00081 32.2 1.6 24 77-100 404-427 (671)
312 3iz6_X 40S ribosomal protein S 27.0 17 0.00058 25.6 0.5 43 65-107 19-66 (86)
313 2jvx_A NF-kappa-B essential mo 26.9 18 0.00063 20.4 0.6 10 77-86 2-11 (28)
314 2egq_A FHL1 protein; LIM domai 26.8 35 0.0012 20.9 2.0 34 80-113 17-63 (77)
315 3zyq_A Hepatocyte growth facto 26.7 27 0.00091 26.9 1.7 28 80-111 166-195 (226)
316 2dar_A PDZ and LIM domain prot 26.6 40 0.0014 21.5 2.3 35 79-113 26-68 (90)
317 5nul_A Flavodoxin; electron tr 26.5 69 0.0024 21.2 3.6 38 31-72 67-104 (138)
318 1zfo_A LAsp-1; LIM domain, zin 26.5 22 0.00077 19.6 0.9 9 80-88 5-13 (31)
319 1vq8_U 50S ribosomal protein L 26.3 18 0.00062 24.1 0.5 22 79-100 4-33 (66)
320 3sub_A ADP-ribosylation factor 26.3 32 0.0011 26.5 2.0 40 64-103 8-49 (163)
321 1v6g_A Actin binding LIM prote 25.6 38 0.0013 21.1 2.0 32 80-111 17-56 (81)
322 1wfh_A Zinc finger (AN1-like) 25.3 36 0.0012 22.6 1.9 31 75-110 12-42 (64)
323 3j20_W 30S ribosomal protein S 24.9 48 0.0016 22.0 2.4 28 80-107 17-45 (63)
324 3j21_V 50S ribosomal protein L 24.7 23 0.0008 23.5 0.9 23 78-100 4-34 (66)
325 2zkr_u 60S ribosomal protein L 24.7 20 0.00067 27.6 0.6 22 79-100 4-33 (157)
326 1wfk_A Zinc finger, FYVE domai 24.7 36 0.0012 22.9 1.8 28 78-109 9-38 (88)
327 1hcq_A Protein (estrogen recep 24.6 20 0.00067 24.3 0.5 26 77-103 3-28 (84)
328 2cuq_A Four and A half LIM dom 24.5 31 0.0011 21.3 1.4 34 80-113 17-58 (80)
329 1z2q_A LM5-1; membrane protein 24.4 31 0.0011 22.7 1.4 27 79-109 22-50 (84)
330 1x68_A FHL5 protein; four-and- 24.3 43 0.0015 20.6 2.1 34 80-113 7-52 (76)
331 2a20_A Regulating synaptic mem 23.7 12 0.00043 25.0 -0.6 24 80-103 35-58 (62)
332 2gai_A DNA topoisomerase I; zi 23.6 16 0.00053 32.7 -0.2 26 81-106 575-607 (633)
333 2v3b_B Rubredoxin 2, rubredoxi 23.6 42 0.0014 21.1 1.9 13 96-108 3-15 (55)
334 1x62_A C-terminal LIM domain p 23.6 24 0.0008 22.1 0.7 36 78-113 15-58 (79)
335 2e2z_A TIM15; protein import, 23.2 50 0.0017 23.7 2.4 31 75-105 10-47 (100)
336 1zso_A Hypothetical protein; s 23.1 35 0.0012 25.9 1.7 25 80-104 39-78 (164)
337 4a17_T RPL24, 60S ribosomal pr 22.7 22 0.00074 27.4 0.4 23 78-100 5-35 (158)
338 2kpi_A Uncharacterized protein 22.4 72 0.0025 20.0 2.8 26 79-106 11-38 (56)
339 3izc_Z 60S ribosomal protein R 22.3 23 0.00079 27.2 0.6 23 78-100 3-33 (155)
340 2co8_A NEDD9 interacting prote 22.3 29 0.00098 22.1 0.9 35 78-112 15-58 (82)
341 1x4w_A Hypothetical protein FL 21.8 24 0.00081 23.7 0.4 32 75-110 12-45 (67)
342 1yk4_A Rubredoxin, RD; electro 21.7 52 0.0018 20.5 2.0 13 96-108 2-14 (52)
343 3nrl_A Uncharacterized protein 21.5 23 0.00078 24.8 0.3 17 98-114 32-48 (81)
344 3mhs_C SAGA-associated factor 21.4 30 0.001 24.9 1.0 23 92-114 66-88 (99)
345 2c6a_A Ubiquitin-protein ligas 21.1 34 0.0012 21.6 1.1 11 95-105 12-22 (46)
346 3gmf_A Protein-disulfide isome 21.1 11 0.00037 28.2 -1.5 14 73-86 19-32 (205)
347 1s24_A Rubredoxin 2; electron 20.9 50 0.0017 22.9 2.0 15 94-108 33-47 (87)
348 2gli_A Protein (five-finger GL 20.9 37 0.0013 22.4 1.3 31 77-107 96-141 (155)
349 1x61_A Thyroid receptor intera 20.8 45 0.0015 20.1 1.6 35 79-113 6-50 (72)
350 3c5k_A HD6, histone deacetylas 20.8 63 0.0022 22.7 2.6 35 79-121 25-59 (109)
351 1v5n_A PDI-like hypothetical p 20.7 44 0.0015 22.5 1.6 25 78-106 47-71 (89)
352 2kn9_A Rubredoxin; metalloprot 20.7 50 0.0017 22.7 1.9 15 94-108 25-39 (81)
353 1ncs_A Peptide M30F, transcrip 20.5 29 0.001 18.9 0.6 13 76-88 16-30 (47)
354 3dwd_A ADP-ribosylation factor 20.5 41 0.0014 25.4 1.6 38 65-103 26-65 (147)
No 1
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=100.00 E-value=2.1e-53 Score=306.84 Aligned_cols=92 Identities=97% Similarity=1.470 Sum_probs=91.1
Q ss_pred hhccceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHH
Q 045338 43 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 122 (134)
Q Consensus 43 MakrTKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk 122 (134)
||||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++||++||||||+|+||+|.||+
T Consensus 1 Makrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~AGGAy~~~T~~~~tv~ 80 (92)
T 3iz5_m 1 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKFAVKRKAVGIWGCKDCGKVKAGGAYTMNTASAVTVR 80 (92)
T ss_dssp CCSCSSCCTTGGGTTTSSCHHHHHHHHHHHHHHHSCBCCTTTCSSCBEEEETTEEECSSSCCEEECCSSSSCCHHHHHHH
T ss_pred CCcccceeeecCCCcCCcChHHHHHHHHHHHHHhccccCcccCCCeeEecCcceEEcCCCCCEEeCCcccCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 045338 123 STIRRLREQTES 134 (134)
Q Consensus 123 ~~Irrl~e~~e~ 134 (134)
++|+||+|++|+
T Consensus 81 ~~irrl~e~~~~ 92 (92)
T 3iz5_m 81 STIRRLREQTEA 92 (92)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcC
Confidence 999999999986
No 2
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=100.00 E-value=3.2e-53 Score=305.96 Aligned_cols=92 Identities=66% Similarity=1.113 Sum_probs=91.1
Q ss_pred hhccceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHH
Q 045338 43 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 122 (134)
Q Consensus 43 MakrTKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk 122 (134)
|+||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||+|.||+
T Consensus 1 Makrtkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv~ 80 (92)
T 3izc_m 1 MAKRTKKVGITGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVR 80 (92)
T ss_dssp CCSCSSCCTTGGGTCSCSCHHHHHHHHHHHHHHHSCCCCSSSCSSCCEEEETTEEECTTTCCEEECCSSSSCCHHHHHHH
T ss_pred CCcccceeeecCCCcCCcChhHHHHHHHHHHHHhcCCcCCCCCCceeeecccceEEcCCCCCEEeCCcccCCCcHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcC
Q 045338 123 STIRRLREQTES 134 (134)
Q Consensus 123 ~~Irrl~e~~e~ 134 (134)
++|+||+|++|+
T Consensus 81 ~~irrl~e~~~~ 92 (92)
T 3izc_m 81 STIRRLREMVEA 92 (92)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHhhcC
Confidence 999999999985
No 3
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=100.00 E-value=2.6e-52 Score=306.49 Aligned_cols=91 Identities=63% Similarity=1.063 Sum_probs=89.4
Q ss_pred hhccceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHH
Q 045338 43 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 122 (134)
Q Consensus 43 MakrTKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk 122 (134)
|+||||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++||++||||||+|+||++.||+
T Consensus 1 MakrTkkvgi~GkyGtRYGaslRK~vkkIE~~q~aky~CpfCgk~~vKR~a~GIW~C~kCg~~~AGGAy~~~T~~a~tv~ 80 (103)
T 4a17_Y 1 MAKRTQKVGITRKYGTRYGASLRKVVKKFEITQHAKYGCPFCGKVAVKRAAVGIWKCKPCKKIIAGGAWELTTPPAVTAK 80 (103)
T ss_dssp -CCCCSSCGGGGGGTTTTCHHHHHHHHHHHHHHHSCEECTTTCCEEEEEEETTEEEETTTTEEEECCSSCSSCHHHHHHH
T ss_pred CCcccceeeecCCCcCCCChhHHHHHHHHHHHhhcCCCCCCCCCceeeecCcceEEcCCCCCEEeCCcccCCCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhc
Q 045338 123 STIRRLREQTE 133 (134)
Q Consensus 123 ~~Irrl~e~~e 133 (134)
++|+||+|++|
T Consensus 81 ~~irrl~e~~~ 91 (103)
T 4a17_Y 81 TTMNRLKKLQE 91 (103)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999987
No 4
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=100.00 E-value=1.6e-49 Score=296.53 Aligned_cols=96 Identities=31% Similarity=0.622 Sum_probs=72.9
Q ss_pred hhhhhhccceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchH
Q 045338 39 CFCKMTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASA 118 (134)
Q Consensus 39 ~~~~MakrTKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~ 118 (134)
+.+.|++|||||||+||||+|||++|||+|++||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||+|
T Consensus 21 ~~~~MakrtKkVGi~GkyG~RYGaslRK~vkkiE~~q~akytCPfCGk~~vKR~avGIW~C~~Cgk~fAGGAy~~~T~~~ 100 (116)
T 3cc2_Z 21 QQTTMASKSGKTGSSGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGG 100 (116)
T ss_dssp -------------CGGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHH
T ss_pred hHHHHHhccCccccccccccccchHHHHHHHHHHHHhccCCcCCCCCCceeEecCceeEECCCCCCEEECCCcccccchh
Confidence 34569999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q 045338 119 VTVRSTIRRLREQTES 134 (134)
Q Consensus 119 ~tvk~~Irrl~e~~e~ 134 (134)
.|++++|+||+|++|.
T Consensus 101 ~t~~~~irrl~e~~~~ 116 (116)
T 3cc2_Z 101 KTVRRSIRAALSEDEE 116 (116)
T ss_dssp HHHHHC----------
T ss_pred hhHHHHHHHHHHhccC
Confidence 9999999999999873
No 5
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=3.8e-48 Score=274.94 Aligned_cols=82 Identities=41% Similarity=0.815 Sum_probs=75.8
Q ss_pred hhccceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHH
Q 045338 43 MTKRTKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVR 122 (134)
Q Consensus 43 MakrTKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk 122 (134)
|| |||||||+||||+|||++|||+|++||++||++|+|||||+++|||.++|||+|++|+++||||||+|+||+|.|+.
T Consensus 1 Ma-~tkkvgi~GkyG~RYG~slRK~vkkie~~q~~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~AGGAy~~~T~~~~t~~ 79 (83)
T 3j21_i 1 MS-GTKKVGSAGRFGARYGLKIRRRVAAVEAKMRQKHTCPVCGRKAVKRISTGIWQCQKCGATFAGGAYLPVTPAGKAVR 79 (83)
T ss_dssp ------CCCSGGGGTTCSCHHHHHHHHHHHHHHHSCBCCSSSCSSCEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHH
T ss_pred CC-ccceeeecCCCcCCcChhHHHHHHHHHHHhhcccCCCCCCCceeEecCcCeEEcCCCCCEEeCCccccCccHhhhhh
Confidence 88 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 045338 123 STI 125 (134)
Q Consensus 123 ~~I 125 (134)
++|
T Consensus 80 r~~ 82 (83)
T 3j21_i 80 RIT 82 (83)
T ss_dssp HSC
T ss_pred hcc
Confidence 865
No 6
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=100.00 E-value=4.6e-43 Score=243.42 Aligned_cols=71 Identities=63% Similarity=1.140 Sum_probs=69.7
Q ss_pred ccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHHH
Q 045338 53 VGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 123 (134)
Q Consensus 53 ~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk~ 123 (134)
+||||+|||++|||+|++||++||++|+|||||+++|||.++|||+|++|+++||||||+|+||+|.||++
T Consensus 1 ~GkyG~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~tv~s 71 (72)
T 3jyw_9 1 TGKYGVRYGSSLRRQVKKLEIQQHARYDCSFCGKKTVKRGAAGIWTCSCCKKTVAGGAYTVSTAAAATVRS 71 (72)
T ss_dssp CTTTTTSSCHHHHTTTHHHHHHHHSCBCCSSCCSSCBSBCSSSCBCCSSSCCCCCCSSSSSCCHHHHHHTT
T ss_pred CCcccCccChhHHHHHHHHHHHhccCccCCCCCCceeEecCCCeEECCCCCCEEeCCccccCCccceeeec
Confidence 58999999999999999999999999999999999999999999999999999999999999999999986
No 7
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=100.00 E-value=7.7e-42 Score=240.87 Aligned_cols=82 Identities=33% Similarity=0.682 Sum_probs=71.4
Q ss_pred ccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHHHHHHHHHhhh
Q 045338 53 VGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 132 (134)
Q Consensus 53 ~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk~~Irrl~e~~ 132 (134)
+||||+|||++|||+|++||++||.+|+|||||++.++|.++|||+|++||++||||||+|+||+|.+++++|+||+|++
T Consensus 2 ~gk~g~rYG~~lRk~vk~ie~~q~~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~aggay~~~t~~~~~~~~~i~r~~~~~ 81 (83)
T 1vq8_Z 2 SGRFGARYGRVSRRRVAEIESEMNEDHACPNCGEDRVDRQGTGIWQCSYCDYKFTGGSYKPETPGGKTVRRSIRAALSED 81 (83)
T ss_dssp GGGGTTCSCHHHHHHHHHHHHHHHSCEECSSSCCEEEEEEETTEEEETTTCCEEECCSSSSSCHHHHHHHHC--------
T ss_pred CCccccccchHHHHHHHHHHHhccccCcCCCCCCcceeccCCCeEECCCCCCEecCCEecccchHHHHHHHHHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cC
Q 045338 133 ES 134 (134)
Q Consensus 133 e~ 134 (134)
|.
T Consensus 82 ~~ 83 (83)
T 1vq8_Z 82 EE 83 (83)
T ss_dssp --
T ss_pred cC
Confidence 73
No 8
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=100.00 E-value=5.7e-42 Score=238.03 Aligned_cols=72 Identities=38% Similarity=0.792 Sum_probs=70.3
Q ss_pred eccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHHHH
Q 045338 52 IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTVRS 123 (134)
Q Consensus 52 i~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tvk~ 123 (134)
|+||||+|||++|||+|+|||++||++|+|||||+++|+|.++|||+|++|+++||||||+|+||++.++++
T Consensus 1 i~Gk~G~RYG~slRK~vkkie~~q~~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~AGGAy~~~T~~~~t~~~ 72 (73)
T 1ffk_W 1 PTGRFGPRYGLKIRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGHCGYKIAGGAYTPETVAGKAVMK 72 (73)
T ss_pred CCcccccccChhHHHHHHHHHHhcccCccCCCCCCceeEEEEeEEEECCCCCcEEECCCccccccceEEEec
Confidence 689999999999999999999999999999999999999999999999999999999999999999998875
No 9
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=98.61 E-value=3.9e-09 Score=68.80 Aligned_cols=34 Identities=29% Similarity=0.624 Sum_probs=31.6
Q ss_pred HHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 68 IKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 68 vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
+.+||..+..+|.||.||.. .++|||+|++||++
T Consensus 4 ~~eie~r~~~k~iCpkC~a~----~~~gaw~CrKCG~~ 37 (51)
T 3j21_g 4 FPEAEARIFKKYVCLRCGAT----NPWGAKKCRKCGYK 37 (51)
T ss_dssp CTTHHHHSSSEEECTTTCCE----ECTTCSSCSSSSSC
T ss_pred HHHHHHHHhCCccCCCCCCc----CCCCceecCCCCCc
Confidence 46899999999999999986 89999999999986
No 10
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=95.66 E-value=0.008 Score=38.17 Aligned_cols=28 Identities=29% Similarity=0.730 Sum_probs=23.2
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.||.||...+-.....-|.|.+||.+.
T Consensus 20 k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 20 KFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp EECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred ccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 3599999977666667899999999885
No 11
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=94.92 E-value=0.064 Score=35.47 Aligned_cols=47 Identities=11% Similarity=0.260 Sum_probs=30.7
Q ss_pred ccCCCCceeeEEe----------------eeeeeeeCCCCeeEeccccccccchHHHHHHHHHHHHhhh
Q 045338 80 FCEFCGKYAVKRK----------------AVGIWGCKDCGKVKAGGAYTLNTASAVTVRSTIRRLREQT 132 (134)
Q Consensus 80 ~CpfCGk~~VKR~----------------avGIW~CkkCgkt~AGGAy~p~T~~~~tvk~~Irrl~e~~ 132 (134)
.||+||...+.+. .+=-|.|..||+.+.. ...+.-...++..|+...
T Consensus 4 ~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I~~Vp~~~C~~CGE~~~~------~e~~~~~~~~~~~f~~~v 66 (78)
T 3ga8_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMN------KEESDAFMAQVKAFRASV 66 (78)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEETTTCCEECC------HHHHHHHHHHHHHHHHHH
T ss_pred ECCCCCCCeeEeEEEEEEEEECCEEEEEcCceeEECCCCCCEEEC------HHHHHHHHHHHHHHHHHH
Confidence 6999996532211 4567999999998754 445555566666666543
No 12
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=94.57 E-value=0.017 Score=37.32 Aligned_cols=31 Identities=23% Similarity=0.595 Sum_probs=23.3
Q ss_pred hcccccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 76 HSKYFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 76 hakY~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
+....||.||...+--...+-|.|.+|+++.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 3467899999855322345799999999986
No 13
>1d0q_A DNA primase; zinc-binding motif, protein, transferase; HET: DNA; 1.71A {Geobacillus stearothermophilus} SCOP: g.41.3.2
Probab=94.46 E-value=0.013 Score=40.72 Aligned_cols=51 Identities=24% Similarity=0.491 Sum_probs=31.8
Q ss_pred ccccCCCCce--eeE-EeeeeeeeeCCCCeeEecccccccc-chHHHHHHHHHHHHh
Q 045338 78 KYFCEFCGKY--AVK-RKAVGIWGCKDCGKVKAGGAYTLNT-ASAVTVRSTIRRLRE 130 (134)
Q Consensus 78 kY~CpfCGk~--~VK-R~avGIW~CkkCgkt~AGGAy~p~T-~~~~tvk~~Irrl~e 130 (134)
.+.||||+.. ++. ....|+|+|-.||. .|.+..+-. --+.+...|++.|.+
T Consensus 37 ~~~CPfh~e~~pSf~V~~~k~~~~Cf~cg~--gGd~i~fv~~~~~~sf~eA~~~La~ 91 (103)
T 1d0q_A 37 FGLCPFHGEKTPSFSVSPEKQIFHCFGCGA--GGNAFTFLMDIEGIPFVEAAKRLAA 91 (103)
T ss_dssp EECCSSSCCSSCCEEEETTTTEEEETTTCC--EECHHHHHHHHHTCCHHHHHHHHHH
T ss_pred EEECCCCCCCCCcEEEEcCCCEEEECCCCC--CCCHHHHHHHHhCCCHHHHHHHHHH
Confidence 5689999864 322 13568999999994 455554321 123346666666654
No 14
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=94.35 E-value=0.021 Score=35.03 Aligned_cols=32 Identities=22% Similarity=0.438 Sum_probs=24.5
Q ss_pred cccccCCCCcee-eEEeeeeeeeeCCCCeeEec
Q 045338 77 SKYFCEFCGKYA-VKRKAVGIWGCKDCGKVKAG 108 (134)
Q Consensus 77 akY~CpfCGk~~-VKR~avGIW~CkkCgkt~AG 108 (134)
..+.||.||... +--.+.|-+.|..||..+.-
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBCCC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcccc
Confidence 356899999844 44446799999999987754
No 15
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=94.25 E-value=0.02 Score=36.93 Aligned_cols=34 Identities=18% Similarity=0.292 Sum_probs=26.5
Q ss_pred ccccCCCCceee-EEeeeeeeeeCCCCeeEecccc
Q 045338 78 KYFCEFCGKYAV-KRKAVGIWGCKDCGKVKAGGAY 111 (134)
Q Consensus 78 kY~CpfCGk~~V-KR~avGIW~CkkCgkt~AGGAy 111 (134)
...||.||...+ .-.+.|.+.|..||.+++....
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CGlVl~e~~i 45 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECGLVVGDRVI 45 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTCCEECCSCC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCCCEEecccc
Confidence 347999998544 4447899999999999987543
No 16
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=93.60 E-value=0.052 Score=37.98 Aligned_cols=45 Identities=22% Similarity=0.451 Sum_probs=31.6
Q ss_pred hhcccccCCCCce-e--eEE---eeeeeeeeCCCCeeEeccccccccchHH
Q 045338 75 QHSKYFCEFCGKY-A--VKR---KAVGIWGCKDCGKVKAGGAYTLNTASAV 119 (134)
Q Consensus 75 qhakY~CpfCGk~-~--VKR---~avGIW~CkkCgkt~AGGAy~p~T~~~~ 119 (134)
....|+||||+.. + ++. ..+|.=.|+.|+..|.=-.-.++.|.=+
T Consensus 20 L~t~F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~epiDV 70 (85)
T 1wii_A 20 LETQFTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLSEPVDV 70 (85)
T ss_dssp CSSCCCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSCCTTHH
T ss_pred CCCeEcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccCcchhh
Confidence 4567899999988 3 332 3689999999999887644444444433
No 17
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=92.94 E-value=0.048 Score=42.04 Aligned_cols=25 Identities=20% Similarity=0.445 Sum_probs=21.7
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 80 FCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 80 ~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
.||-|.|..+ -...|.|.|.+|+..
T Consensus 44 ACp~CnKKV~-~~~~g~~~CekC~~~ 68 (172)
T 3u50_C 44 RCTCQGKSVL-KYHGDSFFCESCQQF 68 (172)
T ss_dssp ECTTSCCCEE-EETTTEEEETTTTEE
T ss_pred hchhhCCEee-eCCCCeEECCCCCCC
Confidence 5999988766 467899999999997
No 18
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=92.54 E-value=0.063 Score=40.57 Aligned_cols=29 Identities=21% Similarity=0.566 Sum_probs=23.4
Q ss_pred ccCC--CCceeeEEeeeeeeeeCCCCeeEecc
Q 045338 80 FCEF--CGKYAVKRKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 80 ~Cpf--CGk~~VKR~avGIW~CkkCgkt~AGG 109 (134)
.||. |.|..+ -.+.|.|.|.+|+..+.--
T Consensus 45 aC~~~~CnKKv~-~~~~g~~~CekC~~~~~~~ 75 (181)
T 1l1o_C 45 ACPTQDCNKKVI-DQQNGLYRCEKCDTEFPNF 75 (181)
T ss_dssp BCCSTTCCCBCE-EETTTEEEETTTTEEESSC
T ss_pred CCCchhcCCccc-cCCCCeEECCCCCCcCCCc
Confidence 6999 999755 3677999999999887543
No 19
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=92.17 E-value=0.15 Score=35.25 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=21.4
Q ss_pred ccCCCCceeeEEe----------------eeeeeeeCCCCeeEecc
Q 045338 80 FCEFCGKYAVKRK----------------AVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 80 ~CpfCGk~~VKR~----------------avGIW~CkkCgkt~AGG 109 (134)
.||+||+..+... ++=.|.|..||..+...
T Consensus 4 ~Cp~Cg~~~~~~~~~~~~~~~kg~~~~v~~v~~~~C~~CGE~~~d~ 49 (133)
T 3o9x_A 4 KCPVCHQGEMVSGIKDIPYTFRGRKTVLKGIHGLYCVHCEESIMNK 49 (133)
T ss_dssp BCTTTSSSBEEEEEEEEEEEETTEEEEEEEEEEEEESSSSCEECCH
T ss_pred CCCcCCCCceeeceEEEEEEECCEEEEECCCceeECCCCCCEeecH
Confidence 6999997632211 34689999999988553
No 20
>2au3_A DNA primase; zinc ribbon, toprim, RNA polymerase, DNA replication, transf; HET: DNA; 2.00A {Aquifex aeolicus}
Probab=91.68 E-value=0.056 Score=45.06 Aligned_cols=32 Identities=28% Similarity=0.554 Sum_probs=21.7
Q ss_pred ccccCCCCce--e--eEEeeeeeeeeCCCCeeEeccccc
Q 045338 78 KYFCEFCGKY--A--VKRKAVGIWGCKDCGKVKAGGAYT 112 (134)
Q Consensus 78 kY~CpfCGk~--~--VKR~avGIW~CkkCgkt~AGGAy~ 112 (134)
...||||+.. + |. ..-|+|+|-.||. .|.+..
T Consensus 34 ~~~CPfh~ektpSf~V~-~~k~~~~CFgCg~--gGd~i~ 69 (407)
T 2au3_A 34 RTNCPFHPDDTPSFYVS-PSKQIFKCFGCGV--GGDAIK 69 (407)
T ss_dssp EECCSSSCCSSCCEEEE-TTTTEEEETTTCC--EECHHH
T ss_pred EeeCcCCCCCCCeEEEE-CCCCEEEECCCCC--CCCHHH
Confidence 3479999854 2 33 3569999999994 444443
No 21
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A
Probab=90.74 E-value=0.074 Score=30.45 Aligned_cols=30 Identities=37% Similarity=0.645 Sum_probs=18.9
Q ss_pred ccccCCCCceeeE--------Ee--eeeeeeeCCCCeeEe
Q 045338 78 KYFCEFCGKYAVK--------RK--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 78 kY~CpfCGk~~VK--------R~--avGIW~CkkCgkt~A 107 (134)
+|.|+.||+.-.. +. +.--|.|..|++.|.
T Consensus 1 p~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 40 (57)
T 1bbo_A 1 KYICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK 40 (57)
T ss_dssp CCBCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred CCcCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence 5778888875311 11 223588888888775
No 22
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=90.20 E-value=0.059 Score=32.59 Aligned_cols=33 Identities=15% Similarity=0.380 Sum_probs=22.7
Q ss_pred hcccccCCCCcee-----eEEee--eeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGKYA-----VKRKA--VGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk~~-----VKR~a--vGIW~CkkCgkt~AG 108 (134)
..+|.|+.||+.- +++.- ..-+.|..|++.|.-
T Consensus 12 ~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f~~ 51 (62)
T 1vd4_A 12 RASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEVEE 51 (62)
T ss_dssp SSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBCEE
T ss_pred CCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcccc
Confidence 3579999999853 22332 245899999998763
No 23
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=90.11 E-value=0.13 Score=39.70 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.3
Q ss_pred ccCCCCce-eeEEeeeeeeeeCCCCee
Q 045338 80 FCEFCGKY-AVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 80 ~CpfCGk~-~VKR~avGIW~CkkCgkt 105 (134)
.||.||+. ...--..|-|+|.+||..
T Consensus 16 ~CP~Cg~~d~~~~~~dg~~~C~~Cg~~ 42 (255)
T 1nui_A 16 PCDNCGSSDGNSLFSDGHTFCYVCEKW 42 (255)
T ss_dssp CCSSSCCSSCEEEETTSCEEETTTCCE
T ss_pred cCCCCCCCCCceEeCCCCeecccCCCc
Confidence 69999984 322113456999999975
No 24
>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}
Probab=90.02 E-value=0.1 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.568 Sum_probs=19.3
Q ss_pred cccccCCCCceeeEE--------e--eeeeeeeCCCCeeEe
Q 045338 77 SKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 77 akY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~A 107 (134)
.+|.|+.||+.-... . ..-.+.|..|++.|.
T Consensus 3 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 43 (57)
T 3uk3_C 3 SSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAA 43 (57)
T ss_dssp --CBCTTTCCBCSCHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CCccCCCCcchhCChHHHHHHHHHcCCCCCcCCCCCcchhC
Confidence 478899998763111 1 234588999988775
No 25
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=90.01 E-value=0.19 Score=41.56 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.2
Q ss_pred hcccccCCCCc---eeeEEeeeeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGK---YAVKRKAVGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk---~~VKR~avGIW~CkkCgkt~AG 108 (134)
...+.||.||. .-+.....|--.|..||.++.-
T Consensus 19 ~~~~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlVl~e 54 (345)
T 4bbr_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSD 54 (345)
T ss_dssp ---CCCSSCCCSSCCEEEEGGGTEEEETTTCBEEES
T ss_pred ccCCcCCCCCCCCCceeEECCCCcEEeCCCCCCccC
Confidence 44678999996 3467778999999999988763
No 26
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=89.98 E-value=0.058 Score=36.44 Aligned_cols=30 Identities=30% Similarity=0.684 Sum_probs=22.7
Q ss_pred hhcccccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 75 QHSKYFCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
..-.|.|+.||..--....-.| +|+.||..
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~d~i-rCp~CG~R 54 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRTDAV-RCKDCGHR 54 (70)
T ss_dssp CCCCEECSSSCCEECCCTTSTT-CCSSSCCC
T ss_pred ceEEEECCCCCCcceeCCCCCc-cCCCCCce
Confidence 5678999999998433344556 99999973
No 27
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=89.93 E-value=0.08 Score=33.21 Aligned_cols=33 Identities=30% Similarity=0.722 Sum_probs=22.4
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~AG 108 (134)
..+|.|+.||+.-..+ . +.--+.|..||+.|.-
T Consensus 2 EKpy~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~~ 44 (60)
T 4gzn_C 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRD 44 (60)
T ss_dssp CCCEECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEESS
T ss_pred CCCccCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcCC
Confidence 3578999999874211 1 2345889999988853
No 28
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Probab=89.70 E-value=0.077 Score=31.38 Aligned_cols=33 Identities=21% Similarity=0.471 Sum_probs=22.5
Q ss_pred hcccccCCCCcee---------eEE---eeeeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGKYA---------VKR---KAVGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR---~avGIW~CkkCgkt~AG 108 (134)
..+|.|+.||+.- ++. .....+.|..|++.|.-
T Consensus 8 ~k~~~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~~ 52 (66)
T 2drp_A 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTR 52 (66)
T ss_dssp TTEEECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEESC
T ss_pred CcceECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccCC
Confidence 3578899999864 222 13356899999988753
No 29
>4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=89.01 E-value=0.18 Score=42.20 Aligned_cols=31 Identities=26% Similarity=0.599 Sum_probs=23.8
Q ss_pred ccCC--CCceeeEEeeeeeeeeCCCCeeEecccc
Q 045338 80 FCEF--CGKYAVKRKAVGIWGCKDCGKVKAGGAY 111 (134)
Q Consensus 80 ~Cpf--CGk~~VKR~avGIW~CkkCgkt~AGGAy 111 (134)
.||. |+|..+. ...|.|.|.+|++.+.-..|
T Consensus 310 aC~~~~C~kkv~~-~~~g~~~C~~C~~~~~~~~~ 342 (444)
T 4gop_C 310 ACASEGCNKKVNL-DHENNWRCEKCDRSYATPEY 342 (444)
T ss_dssp ECCSTTCCCBEEE-CTTSCEEETTTTEEESSCEE
T ss_pred cCCcccCCCcccc-CCCccEECCCCCCcCccccE
Confidence 5999 9986543 57899999999988654433
No 30
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1
Probab=88.33 E-value=0.14 Score=29.61 Aligned_cols=30 Identities=20% Similarity=0.575 Sum_probs=18.9
Q ss_pred ccccCCCCceeeE-----E---e--eeeeeeeCCCCeeEe
Q 045338 78 KYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 78 kY~CpfCGk~~VK-----R---~--avGIW~CkkCgkt~A 107 (134)
+|.|+.||+.-.. + . +.-.+.|..|++.|.
T Consensus 2 ~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 41 (60)
T 2adr_A 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFT 41 (60)
T ss_dssp CBCCTTTCCCBSCHHHHHHHHHTTTSSCSEECTTTCCEES
T ss_pred cCcCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCccC
Confidence 5788888875311 1 1 223578888888775
No 31
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=88.05 E-value=0.16 Score=30.83 Aligned_cols=32 Identities=28% Similarity=0.599 Sum_probs=22.5
Q ss_pred hcccccCCCCceeeE-----E-----eeeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVK-----R-----KAVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VK-----R-----~avGIW~CkkCgkt~A 107 (134)
..+|.|+.|++.-.. + ...--+.|..|++.|.
T Consensus 12 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~ 53 (72)
T 1x6e_A 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS 53 (72)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred CCCccCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence 467999999986411 1 1234589999999875
No 32
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=87.63 E-value=0.092 Score=33.64 Aligned_cols=25 Identities=32% Similarity=1.007 Sum_probs=18.1
Q ss_pred ccccCCCCcee--eEEe--eeeeeeeCCC
Q 045338 78 KYFCEFCGKYA--VKRK--AVGIWGCKDC 102 (134)
Q Consensus 78 kY~CpfCGk~~--VKR~--avGIW~CkkC 102 (134)
...|+||||.. |++. +-|+.-|..|
T Consensus 11 ~~~CSFCGk~~~ev~~LIaGpgv~IC~eC 39 (51)
T 2ds5_A 11 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 39 (51)
T ss_dssp CCBCTTTCCBTTTSSCEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHhcccCCCCCCEehHHH
Confidence 46799999875 5555 3467888777
No 33
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=87.59 E-value=0.54 Score=33.78 Aligned_cols=30 Identities=23% Similarity=0.624 Sum_probs=23.5
Q ss_pred cccCCCCceeeEEe----eeeeeeeCCCCeeEec
Q 045338 79 YFCEFCGKYAVKRK----AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 79 Y~CpfCGk~~VKR~----avGIW~CkkCgkt~AG 108 (134)
..||.||....-.. ..++|.|..|++...-
T Consensus 5 ~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 5 RFCRDCNNMLYPREDKENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CBCSSSCCBCEEEEETTTTEEEEECSSSSCEEEC
T ss_pred CcccccCccCcccccCcCCCCEEECCcCCCeeec
Confidence 47999999865443 3789999999987753
No 34
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.86 E-value=0.14 Score=31.31 Aligned_cols=32 Identities=25% Similarity=0.536 Sum_probs=21.6
Q ss_pred hcccccCCCCcee---------eEEeee---eeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYA---------VKRKAV---GIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR~av---GIW~CkkCgkt~A 107 (134)
..+|.|+.||+.- ++..-. -.+.|..|++.|.
T Consensus 13 ~k~~~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~ 56 (77)
T 2ct1_A 13 EKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA 56 (77)
T ss_dssp CCSEECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred CCCeECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence 3578999999864 221111 3689999998875
No 35
>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=86.70 E-value=0.18 Score=33.59 Aligned_cols=31 Identities=23% Similarity=0.503 Sum_probs=21.8
Q ss_pred cccccCCCCceeeEE--------e--eeeeeeeCCCCeeEe
Q 045338 77 SKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 77 akY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~A 107 (134)
..|.|+.||+.-..+ . +.-.+.|..|++.|.
T Consensus 27 ~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~ 67 (85)
T 2lv2_A 27 ECHLCPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFY 67 (85)
T ss_dssp TTEECTTSCCEESSHHHHHHHHHTTSCSSSEECTTSSCEES
T ss_pred CCEECCCCCCCcCcHHHHhhhhhhccCCCccCCCCCCCEeC
Confidence 468999999874211 1 234589999999885
No 36
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=86.57 E-value=0.18 Score=30.26 Aligned_cols=32 Identities=13% Similarity=0.205 Sum_probs=22.3
Q ss_pred hcccccCCCCcee-----eEE---e--eeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYA-----VKR---K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~-----VKR---~--avGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.- +++ . ..-.+.|..|++.|.
T Consensus 7 ~~~~~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~ 48 (70)
T 1x5w_A 7 GHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK 48 (70)
T ss_dssp CCSEECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence 4679999999863 111 1 234589999999885
No 37
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=85.80 E-value=0.12 Score=35.06 Aligned_cols=25 Identities=32% Similarity=1.007 Sum_probs=18.4
Q ss_pred ccccCCCCcee--eEEe--eeeeeeeCCC
Q 045338 78 KYFCEFCGKYA--VKRK--AVGIWGCKDC 102 (134)
Q Consensus 78 kY~CpfCGk~~--VKR~--avGIW~CkkC 102 (134)
...|+||||.. |++. +-|++-|..|
T Consensus 18 ~~~CSFCGK~e~eV~~LIaGpgvyICdeC 46 (67)
T 1ovx_A 18 LLYCSFCGKSQHEVRKLIAGPSVYICDEC 46 (67)
T ss_dssp CCCCTTTCCCTTTSSSEEECSSCEEEHHH
T ss_pred CcEecCCCCCHHHHcccCCCCCCChhHHH
Confidence 35799999875 5554 3467888888
No 38
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=85.72 E-value=0.19 Score=30.72 Aligned_cols=32 Identities=31% Similarity=0.631 Sum_probs=20.3
Q ss_pred hcccccCCCCcee---------eEEeee-----eeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYA---------VKRKAV-----GIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR~av-----GIW~CkkCgkt~A 107 (134)
..+|.|+.|++.- ++.... ..+.|..|++.|.
T Consensus 13 ~k~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~~C~~C~~~f~ 58 (86)
T 1x6h_A 13 EKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFT 58 (86)
T ss_dssp CCCEECSSSSCEESSHHHHHHHHHHTTCSSCCCCCEECSSSCCEES
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHhcCCcCCCcceECCCCCChhC
Confidence 3568888888764 111111 3588888888775
No 39
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.59 E-value=0.14 Score=31.28 Aligned_cols=32 Identities=34% Similarity=0.562 Sum_probs=21.3
Q ss_pred hcccccCCCCceeeE--------Eee-----eeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVK--------RKA-----VGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VK--------R~a-----vGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.-.. +.- .-.+.|..|++.|.
T Consensus 5 ~k~~~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~ 49 (78)
T 2d9h_A 5 SSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE 49 (78)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred CcCeECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhC
Confidence 457888888876411 111 34688999988875
No 40
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=85.14 E-value=0.29 Score=29.60 Aligned_cols=34 Identities=18% Similarity=0.331 Sum_probs=22.6
Q ss_pred hhcccccCCCCceeeE-----E---e--eeeeeeeCCCCeeEec
Q 045338 75 QHSKYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 75 qhakY~CpfCGk~~VK-----R---~--avGIW~CkkCgkt~AG 108 (134)
...+|.|+.||+.-.. + . ..--+.|..|++.|.-
T Consensus 14 ~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~~ 57 (74)
T 2lce_A 14 SDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNR 57 (74)
T ss_dssp CCCSBCCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEESC
T ss_pred CCCCeECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhCC
Confidence 3467899999986411 1 1 2234899999998863
No 41
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=84.60 E-value=0.11 Score=30.23 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=18.8
Q ss_pred hcccccCCCCcee---------eEEe--eeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYA---------VKRK--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR~--avGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.- +++. ..-.+.|..|++.|+
T Consensus 10 ~k~~~C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F~ 52 (54)
T 2eps_A 10 GKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGPS 52 (54)
T ss_dssp SCCEECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSSC
T ss_pred CCCeECCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCCC
Confidence 3567788887653 1111 223467878877765
No 42
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=84.08 E-value=0.29 Score=32.67 Aligned_cols=30 Identities=27% Similarity=0.688 Sum_probs=22.1
Q ss_pred hhcccccCCCCcee-eEEeeeeeeeeCCCCeeE
Q 045338 75 QHSKYFCEFCGKYA-VKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 75 qhakY~CpfCGk~~-VKR~avGIW~CkkCgkt~ 106 (134)
+...|.|..||.+. ++ ...+| +|+.||..+
T Consensus 18 ~~v~Y~C~~Cg~~~~l~-~~~~i-RC~~CG~RI 48 (63)
T 3h0g_L 18 ATMIYLCADCGARNTIQ-AKEVI-RCRECGHRV 48 (63)
T ss_dssp -CCCCBCSSSCCBCCCC-SSSCC-CCSSSCCCC
T ss_pred CCeEEECCCCCCeeecC-CCCce-ECCCCCcEE
Confidence 45789999999875 55 34455 999999754
No 43
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=83.91 E-value=0.52 Score=37.78 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.6
Q ss_pred hcccccCCCCce---eeEEeeeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKY---AVKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~---~VKR~avGIW~CkkCgkt~A 107 (134)
..+..||.||.. .+.-...|-.-|..||.++.
T Consensus 19 n~~~~CPECGs~~t~IV~D~erGE~VCsdCGLVLE 53 (197)
T 3k1f_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (197)
T ss_dssp CCCCCCTTTCCSSCCEEEEGGGTEEEETTTCBBCC
T ss_pred ccCeECcCCCCcCCeEEEeCCCCEEEEcCCCCCcC
Confidence 345579999983 46667899999999998875
No 44
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A
Probab=83.81 E-value=0.34 Score=30.26 Aligned_cols=12 Identities=33% Similarity=0.775 Sum_probs=7.7
Q ss_pred eeeeCCCCeeEe
Q 045338 96 IWGCKDCGKVKA 107 (134)
Q Consensus 96 IW~CkkCgkt~A 107 (134)
-+.|..|++.|.
T Consensus 31 ~~~C~~C~k~f~ 42 (88)
T 1llm_C 31 PFACDICGRKFA 42 (88)
T ss_dssp CEECTTTCCEES
T ss_pred CccCCCCCCccC
Confidence 366777776664
No 45
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Probab=83.58 E-value=0.36 Score=29.65 Aligned_cols=32 Identities=19% Similarity=0.523 Sum_probs=22.3
Q ss_pred hcccccCCCCceeeEE----------eeeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVKR----------KAVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VKR----------~avGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.-... .+...+.|..|++.|.
T Consensus 32 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 73 (90)
T 1a1h_A 32 QKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFA 73 (90)
T ss_dssp CCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCCccCCCCCcccCCHHHHHHHHHHcCCCCCccCCCCCchhC
Confidence 4579999999864211 1334589999999885
No 46
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=83.44 E-value=0.39 Score=29.24 Aligned_cols=33 Identities=27% Similarity=0.670 Sum_probs=22.6
Q ss_pred hcccccCCCCceeeE-----E---e--eeeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGKYAVK-----R---K--AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk~~VK-----R---~--avGIW~CkkCgkt~AG 108 (134)
..+|.|+.||+.-.. + . ..--+.|..|++.|.-
T Consensus 16 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 58 (77)
T 2cot_A 16 RRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQ 58 (77)
T ss_dssp SCSSBCSSSCCBCSCHHHHHHHHTTTCCSCSEECSSSCCEESS
T ss_pred CCCEECCCCCcccCCHHHHHHHHHHcCCCcCeeCCCCCCccCC
Confidence 467999999986421 1 1 2345899999998863
No 47
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=83.34 E-value=0.54 Score=36.74 Aligned_cols=28 Identities=21% Similarity=0.266 Sum_probs=21.8
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.||.||...+=..-..=|+|.+|+.++
T Consensus 114 ~~Cp~Cg~g~fma~h~dR~~CGkC~~t~ 141 (189)
T 2xzm_9 114 KGCPKCGPGIFMAKHYDRHYCGKCHLTL 141 (189)
T ss_dssp EECSTTCSSCEEEECSSCEEETTTCCCB
T ss_pred ccCCccCCCccccCccCCCccCCceeEE
Confidence 4699999765444555679999999987
No 48
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=83.04 E-value=0.59 Score=33.19 Aligned_cols=31 Identities=16% Similarity=0.443 Sum_probs=23.6
Q ss_pred cccCCCCceeeEEeee----eeeeeCCCCeeEecc
Q 045338 79 YFCEFCGKYAVKRKAV----GIWGCKDCGKVKAGG 109 (134)
Q Consensus 79 Y~CpfCGk~~VKR~av----GIW~CkkCgkt~AGG 109 (134)
..||.||....-+..- -.|.|..|++...-.
T Consensus 5 ~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECNNMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSCCCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCCCEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 4699999987555443 389999999987654
No 49
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}
Probab=82.76 E-value=0.36 Score=28.99 Aligned_cols=33 Identities=27% Similarity=0.646 Sum_probs=23.7
Q ss_pred hhcccccCCCCceeeEE----------eeeeeeeeCCCCeeEe
Q 045338 75 QHSKYFCEFCGKYAVKR----------KAVGIWGCKDCGKVKA 107 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR----------~avGIW~CkkCgkt~A 107 (134)
...+|.|+.|++.-... .+...+.|..|++.|.
T Consensus 26 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 68 (82)
T 2kmk_A 26 DTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFS 68 (82)
T ss_dssp TCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEECTTTSCEES
T ss_pred CCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCcCCCcchhhC
Confidence 34679999999865221 1345699999999885
No 50
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=82.59 E-value=1.4 Score=27.42 Aligned_cols=31 Identities=26% Similarity=0.589 Sum_probs=22.1
Q ss_pred ccccCCCCceeeE------Ee----eeeeeeeCCCCeeEec
Q 045338 78 KYFCEFCGKYAVK------RK----AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 78 kY~CpfCGk~~VK------R~----avGIW~CkkCgkt~AG 108 (134)
...||.||...+. |. .+=++.|.+||..+.-
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~w~~ 55 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHTWRS 55 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCEEEC
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCEecc
Confidence 5689999986532 11 2457999999998753
No 51
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=82.35 E-value=0.48 Score=22.71 Aligned_cols=10 Identities=30% Similarity=0.643 Sum_probs=6.5
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 2m0e_A 2 EHKCPHCDKK 11 (29)
T ss_dssp CCCCSSCCCC
T ss_pred CCcCCCCCcc
Confidence 5667777654
No 52
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=81.53 E-value=0.36 Score=39.48 Aligned_cols=32 Identities=31% Similarity=0.479 Sum_probs=25.5
Q ss_pred hcccccCCCCce---eeEEeeeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKY---AVKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~---~VKR~avGIW~CkkCgkt~A 107 (134)
.....||.||.. .+...+.|-.-|..||.++.
T Consensus 19 ~~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl~ 53 (345)
T 3k7a_M 19 NIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLS 53 (345)
T ss_dssp CCCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCCC
T ss_pred cCCCcCcCCCCCCCceEEECCCCCEecCCCCeEcc
Confidence 345679999985 46667899999999998664
No 53
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=80.66 E-value=0.35 Score=32.00 Aligned_cols=34 Identities=18% Similarity=0.425 Sum_probs=21.3
Q ss_pred hhhcccccCCCCcee-eE---------EeeeeeeeeCCCCeeEe
Q 045338 74 SQHSKYFCEFCGKYA-VK---------RKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 74 sqhakY~CpfCGk~~-VK---------R~avGIW~CkkCgkt~A 107 (134)
....+|.|+.||+.- .. ..+.--..|..|++.|.
T Consensus 30 ~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~~C~~Cgk~F~ 73 (96)
T 2ctd_A 30 VDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMFTCHHCGKQLR 73 (96)
T ss_dssp HHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCCCCSSSCCCCS
T ss_pred cCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCeECCCCCCeeC
Confidence 456678888888764 11 11223467888888764
No 54
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=80.53 E-value=0.54 Score=22.80 Aligned_cols=10 Identities=20% Similarity=0.833 Sum_probs=5.8
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvh_A 3 PFSCSLCPQR 12 (27)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCcChh
Confidence 4566666654
No 55
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=80.09 E-value=0.66 Score=22.34 Aligned_cols=10 Identities=30% Similarity=0.972 Sum_probs=6.9
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1klr_A 2 TYQCQYCEFR 11 (30)
T ss_dssp CCCCSSSSCC
T ss_pred CccCCCCCCc
Confidence 5777777764
No 56
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=80.00 E-value=1.3 Score=30.82 Aligned_cols=34 Identities=18% Similarity=0.260 Sum_probs=26.2
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeEeccccccc
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN 114 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~ 114 (134)
..||.|+..... ..+..+|..|++-|.-.|+=|+
T Consensus 3 ~~CP~C~~~l~~--~~~~~~C~~C~~~~~~~afCPe 36 (81)
T 2jrp_A 3 ITCPVCHHALER--NGDTAHCETCAKDFSLQALCPD 36 (81)
T ss_dssp CCCSSSCSCCEE--CSSEEECTTTCCEEEEEEECSS
T ss_pred CCCCCCCCcccc--CCCceECccccccCCCcccCcc
Confidence 468999887654 3557789999998888887765
No 57
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=79.81 E-value=0.63 Score=29.87 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=23.1
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCeeEec
Q 045338 76 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 76 hakY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~AG 108 (134)
..+|.|+.|++.-... . ....+.|..|++.|.-
T Consensus 35 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 77 (110)
T 2csh_A 35 LRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMW 77 (110)
T ss_dssp CCSEECTTTSCEESSSHHHHHHHTTTCCCCCEECSSSCCEESC
T ss_pred CcCccCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCCcchhcC
Confidence 3579999999864211 1 3346999999998853
No 58
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=79.80 E-value=0.82 Score=31.59 Aligned_cols=21 Identities=33% Similarity=0.787 Sum_probs=18.1
Q ss_pred hcccccCCCCceeeEEeeeee
Q 045338 76 HSKYFCEFCGKYAVKRKAVGI 96 (134)
Q Consensus 76 hakY~CpfCGk~~VKR~avGI 96 (134)
-.+..||.||...++|+++-+
T Consensus 28 ~~k~FCp~CGn~TL~Rvsvsv 48 (79)
T 2con_A 28 MNRVFCGHCGNKTLKKVSVTI 48 (79)
T ss_dssp SSCCSCSSSCCSCCEEEECBC
T ss_pred cccccccccCcccceEEEEEE
Confidence 367899999999999998755
No 59
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=79.67 E-value=0.68 Score=22.32 Aligned_cols=10 Identities=30% Similarity=1.046 Sum_probs=6.8
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 ~~~C~~C~~~ 11 (29)
T 1ard_A 2 SFVCEVCTRA 11 (29)
T ss_dssp CCBCTTTCCB
T ss_pred CeECCCCCcc
Confidence 5677777764
No 60
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=79.63 E-value=0.62 Score=22.58 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=6.6
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (29)
T 1rik_A 2 KFACPECPKR 11 (29)
T ss_dssp CEECSSSSCE
T ss_pred CccCCCCCch
Confidence 5677777764
No 61
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=79.60 E-value=0.16 Score=33.02 Aligned_cols=32 Identities=16% Similarity=0.353 Sum_probs=18.2
Q ss_pred hcccccCCCCceee-E--------Eee---eeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAV-K--------RKA---VGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~V-K--------R~a---vGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.-. . |.- .--+.|..|++.|.
T Consensus 22 ~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~~C~~C~k~F~ 65 (98)
T 2gqj_A 22 RGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFK 65 (98)
T ss_dssp TSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHHSCSSSCCCCS
T ss_pred CCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCEECCCCCCccC
Confidence 45677777776533 1 111 22567777777664
No 62
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=79.52 E-value=1.2 Score=32.20 Aligned_cols=25 Identities=32% Similarity=0.772 Sum_probs=18.3
Q ss_pred ccCCCCceeeEEeeee----eeeeCCCCe
Q 045338 80 FCEFCGKYAVKRKAVG----IWGCKDCGK 104 (134)
Q Consensus 80 ~CpfCGk~~VKR~avG----IW~CkkCgk 104 (134)
.||.||....-+...| .+.|..|+.
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cCchhCCccccccccCCCCcceECCCCCC
Confidence 5999998876555333 578999983
No 63
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=79.45 E-value=0.68 Score=22.14 Aligned_cols=10 Identities=30% Similarity=0.932 Sum_probs=6.0
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 1 ~~~C~~C~k~ 10 (27)
T 1znf_A 1 XYKCGLCERS 10 (27)
T ss_dssp -CBCSSSCCB
T ss_pred CccCCCCCCc
Confidence 3667777764
No 64
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.37 E-value=0.65 Score=28.88 Aligned_cols=32 Identities=19% Similarity=0.401 Sum_probs=20.4
Q ss_pred cccccCCCCceeeEE----------eeeeeeeeCCCCeeEec
Q 045338 77 SKYFCEFCGKYAVKR----------KAVGIWGCKDCGKVKAG 108 (134)
Q Consensus 77 akY~CpfCGk~~VKR----------~avGIW~CkkCgkt~AG 108 (134)
.+|.|+.|++.-... .....+.|..|++.|.-
T Consensus 35 ~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~ 76 (96)
T 2dmd_A 35 KPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRN 76 (96)
T ss_dssp CSEECSSSCCEESSHHHHHHHHHHSCCCCCEECSSSSCEESS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHhCCCCCccCCCCCCccCC
Confidence 468888888764211 13345888888887753
No 65
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.31 E-value=0.64 Score=28.87 Aligned_cols=32 Identities=28% Similarity=0.575 Sum_probs=21.4
Q ss_pred hcccccCCCCceeeE--------Eeee----eeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVK--------RKAV----GIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VK--------R~av----GIW~CkkCgkt~A 107 (134)
..+|.|+.|++.-.. +.-. ..+.|..|++.|.
T Consensus 33 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~C~~~f~ 76 (95)
T 2yt9_A 33 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFS 76 (95)
T ss_dssp SCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSSSCCCBS
T ss_pred CCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCceECCCccchhC
Confidence 356899999986421 1112 4689999988774
No 66
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Probab=79.22 E-value=0.36 Score=32.07 Aligned_cols=35 Identities=17% Similarity=0.221 Sum_probs=24.6
Q ss_pred HhhhcccccCCCCceeeEEe--------eeeeeeeCCCCeeEe
Q 045338 73 VSQHSKYFCEFCGKYAVKRK--------AVGIWGCKDCGKVKA 107 (134)
Q Consensus 73 ~sqhakY~CpfCGk~~VKR~--------avGIW~CkkCgkt~A 107 (134)
.....+|.|+.||+.-.... -..-+.|..|++.|+
T Consensus 69 h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~~C~~C~k~f~ 111 (129)
T 2wbt_A 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTKVCPVCKKEFT 111 (129)
T ss_dssp HHHHCSEECTTTCCEESSHHHHHHHHHHTCCCCBCTTTCCBCS
T ss_pred hCCCCCeECCCCCcccCCHhHHHHHHHHCCCCCCCCCCCcccC
Confidence 34467899999998742111 034589999999875
No 67
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=80.48 E-value=0.39 Score=23.15 Aligned_cols=11 Identities=55% Similarity=1.102 Sum_probs=7.6
Q ss_pred ccccCCCCcee
Q 045338 78 KYFCEFCGKYA 88 (134)
Q Consensus 78 kY~CpfCGk~~ 88 (134)
+|.|+.||+.-
T Consensus 2 p~~C~~C~k~f 12 (26)
T 2lvu_A 2 PYVCERCGKRF 12 (26)
Confidence 57788777653
No 68
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=79.16 E-value=0.58 Score=30.17 Aligned_cols=32 Identities=16% Similarity=0.440 Sum_probs=19.0
Q ss_pred hcccccCCCCceeeEE--------e--eeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.-..+ . ..-.+.|..|++.|.
T Consensus 64 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 105 (124)
T 2dlq_A 64 EQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFM 105 (124)
T ss_dssp CCCEECSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEES
T ss_pred CCCeECCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchhC
Confidence 3567788887753211 1 223477888877764
No 69
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=79.04 E-value=0.72 Score=22.49 Aligned_cols=10 Identities=30% Similarity=1.006 Sum_probs=7.4
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 ~~~C~~C~k~ 11 (30)
T 1paa_A 2 AYACGLCNRA 11 (30)
T ss_dssp CSBCTTTCCB
T ss_pred CcCCcccCcc
Confidence 5778888765
No 70
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=78.86 E-value=0.64 Score=22.32 Aligned_cols=9 Identities=44% Similarity=0.940 Sum_probs=4.7
Q ss_pred ccccCCCCc
Q 045338 78 KYFCEFCGK 86 (134)
Q Consensus 78 kY~CpfCGk 86 (134)
+|.|+.||+
T Consensus 2 ~~~C~~C~k 10 (29)
T 2m0f_A 2 PLKCRECGK 10 (29)
T ss_dssp CEECTTTSC
T ss_pred CccCCCCCC
Confidence 355555554
No 71
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=78.79 E-value=0.67 Score=22.45 Aligned_cols=10 Identities=50% Similarity=1.188 Sum_probs=6.6
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 3 ~~~C~~C~k~ 12 (28)
T 2kvf_A 3 PYSCSVCGKR 12 (28)
T ss_dssp SEECSSSCCE
T ss_pred CccCCCCCcc
Confidence 5677777664
No 72
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=78.60 E-value=0.72 Score=23.91 Aligned_cols=13 Identities=15% Similarity=0.421 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (37)
T 1p7a_A 9 IKPFQCPDCDRSF 21 (37)
T ss_dssp SSSBCCTTTCCCB
T ss_pred CCCccCCCCCccc
Confidence 3578999998753
No 73
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=78.31 E-value=0.52 Score=23.15 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=6.5
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 3 ~~~C~~C~k~ 12 (27)
T 2kvg_A 3 PYRCPLCRAG 12 (27)
T ss_dssp TEEETTTTEE
T ss_pred CcCCCCCCcc
Confidence 5677777654
No 74
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Probab=77.99 E-value=0.79 Score=23.52 Aligned_cols=10 Identities=30% Similarity=0.746 Sum_probs=8.1
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (32)
T 2kfq_A 2 AFACPACPKR 11 (32)
T ss_dssp CSSSSSSCTT
T ss_pred CCCCCCCCcc
Confidence 6889999875
No 75
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1
Probab=77.58 E-value=0.73 Score=27.52 Aligned_cols=32 Identities=19% Similarity=0.455 Sum_probs=18.9
Q ss_pred hcccccCC--CCceeeE-----E---e--eeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEF--CGKYAVK-----R---K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~Cpf--CGk~~VK-----R---~--avGIW~CkkCgkt~A 107 (134)
..+|.|++ ||+.-.. + . +..-+.|..|++.|.
T Consensus 17 ~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 60 (73)
T 1f2i_G 17 MRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFS 60 (73)
T ss_dssp CCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred CCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeECCCCCchhC
Confidence 34678874 8875311 1 1 223478888888775
No 76
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=76.68 E-value=0.79 Score=22.04 Aligned_cols=11 Identities=36% Similarity=1.298 Sum_probs=6.9
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 2 k~~~C~~C~~~ 12 (30)
T 2m0d_A 2 KPYQCDYCGRS 12 (30)
T ss_dssp CCEECTTTCCE
T ss_pred cCccCCCCCcc
Confidence 35667777664
No 77
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=76.51 E-value=0.91 Score=33.54 Aligned_cols=33 Identities=24% Similarity=0.615 Sum_probs=24.0
Q ss_pred cccccCCCCceeeEEe----eeeeeeeCCCCeeEecc
Q 045338 77 SKYFCEFCGKYAVKRK----AVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 77 akY~CpfCGk~~VKR~----avGIW~CkkCgkt~AGG 109 (134)
.--.||.||..-.-+. ...+|.|+.|++...-.
T Consensus 23 ~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~~~~ 59 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKENNRLLFECRTCSYVEEAG 59 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBCCCS
T ss_pred CCeeCCCCCCEeeECccCCCceeEEECCCCCCcEEcC
Confidence 3457999999864443 24589999999977543
No 78
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=78.09 E-value=0.53 Score=23.04 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=7.8
Q ss_pred ccccCCCCcee
Q 045338 78 KYFCEFCGKYA 88 (134)
Q Consensus 78 kY~CpfCGk~~ 88 (134)
+|.|+.||+.-
T Consensus 2 ~~~C~~C~k~f 12 (29)
T 2lvt_A 2 PCQCVMCGKAF 12 (29)
Confidence 57788887753
No 79
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.86 E-value=0.19 Score=29.61 Aligned_cols=32 Identities=22% Similarity=0.406 Sum_probs=21.2
Q ss_pred cccccCCCCceeeEEee---eeeeeeCCCCeeEec
Q 045338 77 SKYFCEFCGKYAVKRKA---VGIWGCKDCGKVKAG 108 (134)
Q Consensus 77 akY~CpfCGk~~VKR~a---vGIW~CkkCgkt~AG 108 (134)
.+|.|+.||+.-..+.. ...+.|..|++.|.-
T Consensus 17 ~~~~C~~C~k~f~~~~~l~~~~~~~C~~C~~~f~~ 51 (73)
T 2ctu_A 17 RSQKCSKCGIIFIRRSTLSRRKTPMCEKCRKDSCQ 51 (73)
T ss_dssp SEEECSSSCCEEECCCCCCCSSSCCCHHHHHTCSC
T ss_pred CCeeCCcccchhCCHHHhCcCCCCCCCCCChhhcC
Confidence 46889999876422111 456888888887754
No 80
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=75.51 E-value=0.71 Score=32.37 Aligned_cols=45 Identities=29% Similarity=0.555 Sum_probs=28.0
Q ss_pred chhhHhHHHHHHhhhcccccCCCCceeeEE--------e--eeeeeeeCCCCeeEec
Q 045338 62 ASLRKQIKKMEVSQHSKYFCEFCGKYAVKR--------K--AVGIWGCKDCGKVKAG 108 (134)
Q Consensus 62 aslRK~vkkIE~sqhakY~CpfCGk~~VKR--------~--avGIW~CkkCgkt~AG 108 (134)
..|+..++ +. +...+|.|+.||+.-... . +.--+.|..|++.|.-
T Consensus 36 ~~L~~H~~-~H-~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C~k~F~~ 90 (133)
T 2lt7_A 36 TSLRRHFN-IH-SWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFIN 90 (133)
T ss_dssp HHHHHHHH-HH-HCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCEEESSSCCEESS
T ss_pred HHHHHHHH-Hc-CCCCCeeCCccCeecccccchhhhccccCCCccccCCCCCCCcCC
Confidence 44555543 32 234579999999864221 1 2345899999998853
No 81
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=75.28 E-value=0.92 Score=31.04 Aligned_cols=32 Identities=19% Similarity=0.535 Sum_probs=18.9
Q ss_pred hcccccCCCCcee---------eEEee-----eeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYA---------VKRKA-----VGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR~a-----vGIW~CkkCgkt~A 107 (134)
..+|.|+.||+.- +++.- .--+.|..||+.|.
T Consensus 16 ekpy~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~ 61 (102)
T 2ghf_A 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK 61 (102)
T ss_dssp CSSEECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEES
T ss_pred CcCcCCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccC
Confidence 3467788888753 12111 12367888887775
No 82
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.62 E-value=1 Score=23.07 Aligned_cols=11 Identities=27% Similarity=0.606 Sum_probs=8.2
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (36)
T 2elt_A 8 KPYKCPQCSYA 18 (36)
T ss_dssp CSEECSSSSCE
T ss_pred CCCCCCCCCcc
Confidence 46888888765
No 83
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.56 E-value=0.95 Score=23.37 Aligned_cols=12 Identities=33% Similarity=0.935 Sum_probs=8.3
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 7 ~k~~~C~~C~k~ 18 (36)
T 2els_A 7 GKIFTCEYCNKV 18 (36)
T ss_dssp CCCEECTTTCCE
T ss_pred CCCEECCCCCce
Confidence 356778888765
No 84
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.49 E-value=1.1 Score=22.88 Aligned_cols=12 Identities=33% Similarity=0.933 Sum_probs=8.9
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 7 ~~~~~C~~C~k~ 18 (36)
T 2elr_A 7 GKTHLCDMCGKK 18 (36)
T ss_dssp CSSCBCTTTCCB
T ss_pred CCCeecCcCCCC
Confidence 357888888875
No 85
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=74.46 E-value=1.1 Score=23.16 Aligned_cols=10 Identities=40% Similarity=0.813 Sum_probs=7.1
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
+|.|+.||+.
T Consensus 2 p~~C~~C~k~ 11 (33)
T 1rim_A 2 KFACPECPKR 11 (33)
T ss_dssp CCCCSSSCCC
T ss_pred cccCCCCCch
Confidence 5777777764
No 86
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=76.37 E-value=0.64 Score=22.59 Aligned_cols=12 Identities=25% Similarity=0.703 Sum_probs=8.4
Q ss_pred cccccCCCCcee
Q 045338 77 SKYFCEFCGKYA 88 (134)
Q Consensus 77 akY~CpfCGk~~ 88 (134)
.+|.|+.||+.-
T Consensus 2 k~~~C~~C~k~f 13 (30)
T 2lvr_A 2 KPYVCIHCQRQF 13 (30)
Confidence 357888888753
No 87
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=73.98 E-value=1.1 Score=22.74 Aligned_cols=11 Identities=45% Similarity=0.929 Sum_probs=7.9
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 6 k~~~C~~C~k~ 16 (35)
T 2elx_A 6 SGYVCALCLKK 16 (35)
T ss_dssp CSEECSSSCCE
T ss_pred CCeECCCCcch
Confidence 46778888765
No 88
>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=73.95 E-value=1.1 Score=23.30 Aligned_cols=11 Identities=27% Similarity=0.851 Sum_probs=7.7
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elp_A 8 RAMKCPYCDFY 18 (37)
T ss_dssp CCEECSSSSCE
T ss_pred CCeECCCCChh
Confidence 46778777764
No 89
>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*
Probab=72.94 E-value=1.1 Score=31.28 Aligned_cols=31 Identities=23% Similarity=0.552 Sum_probs=19.1
Q ss_pred hcccccCCCCcee---------eEEee-------eeeeeeCCCCeeE
Q 045338 76 HSKYFCEFCGKYA---------VKRKA-------VGIWGCKDCGKVK 106 (134)
Q Consensus 76 hakY~CpfCGk~~---------VKR~a-------vGIW~CkkCgkt~ 106 (134)
..+|.|+.||+.- ++..- .-...|..|++.+
T Consensus 76 ~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~~~C~~C~k~~ 122 (133)
T 2lt7_A 76 ERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPCRSLQ 122 (133)
T ss_dssp CCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCCEEECCCCSSC
T ss_pred CccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCCeecCCCCchh
Confidence 3578899999864 22221 1246788887654
No 90
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=72.91 E-value=1.2 Score=22.76 Aligned_cols=12 Identities=17% Similarity=0.556 Sum_probs=8.4
Q ss_pred cccccCCCCcee
Q 045338 77 SKYFCEFCGKYA 88 (134)
Q Consensus 77 akY~CpfCGk~~ 88 (134)
.+|.|+.||+.-
T Consensus 6 k~~~C~~C~k~f 17 (35)
T 1srk_A 6 RPFVCRICLSAF 17 (35)
T ss_dssp SCEECSSSCCEE
T ss_pred cCeeCCCCCccc
Confidence 467888887753
No 91
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=72.64 E-value=1.8 Score=32.08 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=21.2
Q ss_pred cccccCC--CCceeeEEeeeeeeeeCCCCeeEe
Q 045338 77 SKYFCEF--CGKYAVKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 77 akY~Cpf--CGk~~VKR~avGIW~CkkCgkt~A 107 (134)
..-.||. ||.-.+=-.-..-|+|.+|+.|+.
T Consensus 117 ~~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~ 149 (152)
T 3u5c_f 117 LRRECSNPTCGAGVFLANHKDRLYCGKCHSVYK 149 (152)
T ss_dssp CSCBCCSTTSCSSSBEEECSSCEEESSSSSCCE
T ss_pred CcCcCCCccCCCceEecccCCCcccCCCceEEE
Confidence 3456999 998543322334699999998863
No 92
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=72.56 E-value=1.2 Score=31.38 Aligned_cols=10 Identities=40% Similarity=1.119 Sum_probs=5.0
Q ss_pred eeeCCCCeeE
Q 045338 97 WGCKDCGKVK 106 (134)
Q Consensus 97 W~CkkCgkt~ 106 (134)
+.|..|++.|
T Consensus 134 ~~C~~C~~~f 143 (190)
T 2i13_A 134 YKCPECGKSF 143 (190)
T ss_dssp EECTTTCCEE
T ss_pred eECCCCCccc
Confidence 4555555444
No 93
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.94 E-value=1.3 Score=22.84 Aligned_cols=13 Identities=15% Similarity=0.529 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elq_A 7 GKPFKCSLCEYAT 19 (36)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCccCCCCCchh
Confidence 3567888887753
No 94
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.72 E-value=1.3 Score=22.83 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 7 ~k~~~C~~C~k~f 19 (36)
T 2elv_A 7 GLLYDCHICERKF 19 (36)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3578888888753
No 95
>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.72 E-value=1.2 Score=23.46 Aligned_cols=12 Identities=25% Similarity=0.747 Sum_probs=8.4
Q ss_pred cccccCCCCcee
Q 045338 77 SKYFCEFCGKYA 88 (134)
Q Consensus 77 akY~CpfCGk~~ 88 (134)
.+|.|+.||+.-
T Consensus 8 k~~~C~~C~k~f 19 (37)
T 2elm_A 8 HLYYCSQCHYSS 19 (37)
T ss_dssp CEEECSSSSCEE
T ss_pred cCeECCCCCccc
Confidence 467888887753
No 96
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=71.30 E-value=2 Score=35.62 Aligned_cols=35 Identities=26% Similarity=0.678 Sum_probs=24.3
Q ss_pred ccccCCCCceeeEEe----eeeeeeeCCCCe-------------eEeccccc
Q 045338 78 KYFCEFCGKYAVKRK----AVGIWGCKDCGK-------------VKAGGAYT 112 (134)
Q Consensus 78 kY~CpfCGk~~VKR~----avGIW~CkkCgk-------------t~AGGAy~ 112 (134)
.--||-||...+..- .|.=..|..|++ ++++|||.
T Consensus 34 n~yCPnCG~~~l~~f~nN~PVaDF~C~~C~EeyELKSk~~~~~~~I~dGAY~ 85 (257)
T 4esj_A 34 QSYCPNCGNNPLNHFENNRPVADFYCNHCSEEFELKSKKGNFSSTINDGAYA 85 (257)
T ss_dssp HCCCTTTCCSSCEEC----CCCEEECTTTCCEEEEEEEESSCCSEEEEEEHH
T ss_pred CCcCCCCCChhhhhccCCCcccccccCCcchhheeccccCccCccccCchHH
Confidence 345888888655332 455678888864 78889884
No 97
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=71.10 E-value=1.1 Score=23.15 Aligned_cols=11 Identities=36% Similarity=0.848 Sum_probs=7.8
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 8 k~~~C~~C~k~ 18 (37)
T 2elo_A 8 RSYSCPVCEKS 18 (37)
T ss_dssp CCCEETTTTEE
T ss_pred CCcCCCCCCCc
Confidence 46778887764
No 98
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1
Probab=69.31 E-value=1 Score=28.55 Aligned_cols=32 Identities=25% Similarity=0.557 Sum_probs=21.7
Q ss_pred hcccccCCCCceeeE--------Ee--eeeeeeeCCCCeeEe
Q 045338 76 HSKYFCEFCGKYAVK--------RK--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 76 hakY~CpfCGk~~VK--------R~--avGIW~CkkCgkt~A 107 (134)
..+|.|+.|++.-.. +. ....+.|..|++.|.
T Consensus 43 ~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 84 (106)
T 2ee8_A 43 ERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFC 84 (106)
T ss_dssp SCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCCCCS
T ss_pred CCCcCCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCCccc
Confidence 357999999986421 11 234589999998775
No 99
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=67.76 E-value=1.8 Score=22.88 Aligned_cols=13 Identities=38% Similarity=0.843 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2ytb_A 9 EKPYRCDQCGKAF 21 (42)
T ss_dssp CCSBCCTTTTCCB
T ss_pred CCCeeCCCccchh
Confidence 3578999998753
No 100
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=66.79 E-value=2.1 Score=22.84 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 9 ~k~~~C~~C~k~f 21 (42)
T 2eos_A 9 EKPYPCEICGTRF 21 (42)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCcc
Confidence 3578999998753
No 101
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=66.47 E-value=5.1 Score=23.48 Aligned_cols=27 Identities=30% Similarity=0.833 Sum_probs=17.9
Q ss_pred ccCCCCcee--eEEe-eeeeeeeCCCCeeE
Q 045338 80 FCEFCGKYA--VKRK-AVGIWGCKDCGKVK 106 (134)
Q Consensus 80 ~CpfCGk~~--VKR~-avGIW~CkkCgkt~ 106 (134)
.||.|+.+. +.+. ..=+=+|+.||..-
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~~ 31 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAIR 31 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCcc
Confidence 599999864 3332 33344799998764
No 102
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=66.38 E-value=1.8 Score=22.79 Aligned_cols=12 Identities=33% Similarity=0.897 Sum_probs=8.7
Q ss_pred cccccCCCCcee
Q 045338 77 SKYFCEFCGKYA 88 (134)
Q Consensus 77 akY~CpfCGk~~ 88 (134)
.+|.|+.||+.-
T Consensus 5 k~~~C~~C~k~f 16 (39)
T 1njq_A 5 RSYTCSFCKREF 16 (39)
T ss_dssp SSEECTTTCCEE
T ss_pred CceECCCCCccc
Confidence 468888888753
No 103
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=66.28 E-value=2 Score=23.82 Aligned_cols=11 Identities=9% Similarity=-0.004 Sum_probs=9.0
Q ss_pred hcccccCCCCc
Q 045338 76 HSKYFCEFCGK 86 (134)
Q Consensus 76 hakY~CpfCGk 86 (134)
..+|.|+.|||
T Consensus 38 ~k~~~C~~C~k 48 (48)
T 2epr_A 38 EKPYSSGPSSG 48 (48)
T ss_dssp CCCCCSCCCCC
T ss_pred CCCccCCCCCC
Confidence 35799999986
No 104
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A
Probab=66.13 E-value=2 Score=26.06 Aligned_cols=31 Identities=26% Similarity=0.743 Sum_probs=18.8
Q ss_pred cccccCC--CCceeeE-----E---e--eeeeeeeCCCCeeEe
Q 045338 77 SKYFCEF--CGKYAVK-----R---K--AVGIWGCKDCGKVKA 107 (134)
Q Consensus 77 akY~Cpf--CGk~~VK-----R---~--avGIW~CkkCgkt~A 107 (134)
.+|.|++ ||+.-.. + . +...+.|..|++.|.
T Consensus 34 ~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~ 76 (89)
T 2wbs_A 34 KPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFS 76 (89)
T ss_dssp CCEECCSTTTCCEESSHHHHHHHHHHHHCCCCEECSSSSCEES
T ss_pred CCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCccCCCCCcccC
Confidence 4678874 8875311 1 1 234578888888775
No 105
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Probab=65.86 E-value=0.91 Score=29.16 Aligned_cols=31 Identities=13% Similarity=0.359 Sum_probs=20.7
Q ss_pred cccccCCCCceeeE---------EeeeeeeeeCCCCeeEe
Q 045338 77 SKYFCEFCGKYAVK---------RKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 77 akY~CpfCGk~~VK---------R~avGIW~CkkCgkt~A 107 (134)
.+|.|+.||+.-.. -.....+.|..|++.|.
T Consensus 41 ~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~~C~~C~~~f~ 80 (107)
T 1wjp_A 41 NAAVCPYCSLRFFSPELKQEHESKCEYKKLTCLECMRTFK 80 (107)
T ss_dssp HSBCCTTTCCCBSSHHHHHHHHHHCSTGGGEEGGGTEECS
T ss_pred CCccCCCCCCccCCHHHHHHHHHcCCCCCccCccccchhC
Confidence 47889999875411 11234588999988775
No 106
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.78 E-value=2 Score=23.34 Aligned_cols=13 Identities=38% Similarity=0.746 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (44)
T 2epv_A 10 EKPYECNECGKAF 22 (44)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCccc
Confidence 3578888888753
No 107
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.44 E-value=2.4 Score=23.06 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enf_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcCeECCCCCccc
Confidence 4578999998763
No 108
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=65.39 E-value=2.3 Score=22.49 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=9.3
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 8 ~k~~~C~~C~k~ 19 (42)
T 2yte_A 8 EKPYSCAECKET 19 (42)
T ss_dssp CCSCBCTTTCCB
T ss_pred CCCeECCCCCCc
Confidence 357899999875
No 109
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=65.36 E-value=5.3 Score=29.06 Aligned_cols=36 Identities=19% Similarity=0.397 Sum_probs=27.5
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCeeEeccccccc
Q 045338 77 SKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLN 114 (134)
Q Consensus 77 akY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~ 114 (134)
-.-.||.|+..-.. . .|.++|..|.+.|.==|+-|+
T Consensus 31 M~~~CP~Cq~eL~~-~-g~~~hC~~C~~~f~~~a~CPd 66 (101)
T 2jne_A 31 MELHCPQCQHVLDQ-D-NGHARCRSCGEFIEMKALCPD 66 (101)
T ss_dssp CCCBCSSSCSBEEE-E-TTEEEETTTCCEEEEEEECTT
T ss_pred ccccCccCCCccee-c-CCEEECccccchhhccccCcc
Confidence 33689999998654 3 568899999998877666664
No 110
>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B
Probab=65.05 E-value=1.6 Score=24.97 Aligned_cols=14 Identities=21% Similarity=0.650 Sum_probs=10.4
Q ss_pred hhcccccCCCCcee
Q 045338 75 QHSKYFCEFCGKYA 88 (134)
Q Consensus 75 qhakY~CpfCGk~~ 88 (134)
...+|.|+.|||.-
T Consensus 5 gekp~~C~~CgK~F 18 (36)
T 1fv5_A 5 KPARFMCLPCGIAF 18 (36)
T ss_dssp SCCCCEETTTTEEC
T ss_pred CccCeECCCCCCcc
Confidence 35688899998763
No 111
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.97 E-value=2.2 Score=23.18 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq1_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp SCCCCCTTTTCCC
T ss_pred CCCeECCcCChhh
Confidence 4579999999853
No 112
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=64.96 E-value=2.1 Score=23.02 Aligned_cols=13 Identities=15% Similarity=0.559 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2yu5_A 10 ENPFKCSKCDRVF 22 (44)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCchh
Confidence 3568888888753
No 113
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Probab=64.36 E-value=2.2 Score=22.54 Aligned_cols=11 Identities=45% Similarity=1.156 Sum_probs=8.0
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 10 ~~~~C~~C~k~ 20 (42)
T 2epc_A 10 TPYLCGQCGKS 20 (42)
T ss_dssp CCEECSSSCCE
T ss_pred CCeECCCCCcc
Confidence 46788888765
No 114
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=64.04 E-value=2.4 Score=22.62 Aligned_cols=13 Identities=38% Similarity=0.805 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2en7_A 10 MKPYVCNECGKAF 22 (44)
T ss_dssp SSSSCCTTTCCCC
T ss_pred CcCeECCCCCCcc
Confidence 3578999998753
No 115
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.95 E-value=2.5 Score=22.98 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2yti_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4579999999863
No 116
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=63.95 E-value=2.3 Score=22.55 Aligned_cols=13 Identities=38% Similarity=0.759 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (41)
T 2ept_A 8 QRVYECQECGKSF 20 (41)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCCc
Confidence 3568888888753
No 117
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Probab=63.62 E-value=2 Score=22.81 Aligned_cols=11 Identities=45% Similarity=0.942 Sum_probs=7.8
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 9 k~~~C~~C~k~ 19 (42)
T 2el5_A 9 NPYECSECGKA 19 (42)
T ss_dssp CSEECSSSCCE
T ss_pred CCccCCCcChh
Confidence 46778877765
No 118
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.38 E-value=2.7 Score=22.98 Aligned_cols=13 Identities=38% Similarity=0.884 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eon_A 10 EKPYKCQVCGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CcccCCCCCCccc
Confidence 3579999999863
No 119
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.33 E-value=2.2 Score=22.61 Aligned_cols=11 Identities=45% Similarity=0.993 Sum_probs=8.0
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 10 k~~~C~~C~k~ 20 (42)
T 2en2_A 10 KPYKCETCGAR 20 (42)
T ss_dssp CSEECTTTCCE
T ss_pred CCEeCCCcChh
Confidence 46788888765
No 120
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.31 E-value=2.4 Score=23.06 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2emi_A 10 ERHYECSECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCCCCCCCCccc
Confidence 3568899998753
No 121
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.29 E-value=2.3 Score=22.75 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (44)
T 2eof_A 10 EKPYECNECQKAF 22 (44)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCeECCCCCccc
Confidence 3568888888753
No 122
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.21 E-value=2.7 Score=22.93 Aligned_cols=13 Identities=31% Similarity=0.572 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoh_A 10 KKPYECKECRKTF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCCcCchh
Confidence 4579999999863
No 123
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=63.04 E-value=2.7 Score=22.91 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emz_A 10 ERPFKCNECGKGF 22 (46)
T ss_dssp CCSCCCSSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 3578999998753
No 124
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.91 E-value=2.4 Score=23.11 Aligned_cols=13 Identities=38% Similarity=0.751 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytp_A 10 ERHYECSECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCcCCccc
Confidence 3578899888763
No 125
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A
Probab=62.91 E-value=2.4 Score=23.08 Aligned_cols=13 Identities=31% Similarity=0.662 Sum_probs=9.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emj_A 10 EKPFECAECGKSF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCEECCCCCccc
Confidence 3568888888753
No 126
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.52 E-value=2.8 Score=22.77 Aligned_cols=13 Identities=38% Similarity=0.733 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq2_A 10 GKPYQCNECGKAF 22 (46)
T ss_dssp SCSSSCCSSCCCC
T ss_pred CCCeECCCCCccc
Confidence 4579999999863
No 127
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.47 E-value=2.8 Score=22.66 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep1_A 10 EKPYECSDCGKSF 22 (46)
T ss_dssp CCSSCCSSSCCCC
T ss_pred CCCcCCCCCCchh
Confidence 3578999998763
No 128
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.45 E-value=2.5 Score=22.96 Aligned_cols=13 Identities=23% Similarity=0.621 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en3_A 10 EKPFQCKECGMNF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCcccChhh
Confidence 3568888888753
No 129
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=62.36 E-value=2.5 Score=22.85 Aligned_cols=13 Identities=23% Similarity=0.465 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytf_A 10 EKPFECSECQKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCccc
Confidence 3568888888753
No 130
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=62.06 E-value=2.6 Score=23.00 Aligned_cols=13 Identities=38% Similarity=0.667 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em4_A 10 QRPYECIECGKAF 22 (46)
T ss_dssp SSSEECSSSCCEE
T ss_pred CcCcCCCCCCCcc
Confidence 3568888888753
No 131
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.96 E-value=2.6 Score=22.99 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoy_A 10 EKCFKCNKCEKTF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCEECcCCCCcC
Confidence 3578899888753
No 132
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.88 E-value=3 Score=22.51 Aligned_cols=13 Identities=38% Similarity=0.736 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eov_A 10 EKPYKCSDCGKSF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCccCCccChhh
Confidence 3579999999753
No 133
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.76 E-value=2.5 Score=22.84 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eow_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCCEECTTSCCEE
T ss_pred CCCeeccccCChh
Confidence 3568888888753
No 134
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.56 E-value=2.9 Score=22.66 Aligned_cols=13 Identities=31% Similarity=0.833 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emg_A 10 ENPFICSECGKVF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 3578999999763
No 135
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.49 E-value=2.7 Score=22.93 Aligned_cols=13 Identities=38% Similarity=0.728 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yto_A 10 EKPYKCSDCGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEECcccCCcc
Confidence 3568888888753
No 136
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.35 E-value=2.6 Score=22.69 Aligned_cols=12 Identities=25% Similarity=0.584 Sum_probs=9.0
Q ss_pred cccccCCCCcee
Q 045338 77 SKYFCEFCGKYA 88 (134)
Q Consensus 77 akY~CpfCGk~~ 88 (134)
.+|.|+.||+.-
T Consensus 11 k~~~C~~C~k~f 22 (44)
T 2emb_A 11 KRYECSKCQATF 22 (44)
T ss_dssp SSEECTTTCCEE
T ss_pred CCeECCCCCCcc
Confidence 568888888753
No 137
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.34 E-value=2.2 Score=22.87 Aligned_cols=12 Identities=42% Similarity=0.816 Sum_probs=8.9
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (44)
T 2eoj_A 10 ENPYECCECGKV 21 (44)
T ss_dssp CCSCEETTTTEE
T ss_pred CcCeeCCCCCCc
Confidence 357888888875
No 138
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.29 E-value=3.1 Score=22.67 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yth_A 10 EKPFQCEECGKRF 22 (46)
T ss_dssp SSSBCCSSSCCCB
T ss_pred CcCCCCCCCCccc
Confidence 3578999999863
No 139
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=61.19 E-value=2.7 Score=22.71 Aligned_cols=13 Identities=38% Similarity=0.879 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yts_A 10 EKPYICNECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCEECCCCChhh
Confidence 3568888888753
No 140
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.93 E-value=3 Score=22.68 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2enh_A 10 EKPYECDVCRKAF 22 (46)
T ss_dssp SSSCBCTTTCCBC
T ss_pred CCCcCCCCcCchh
Confidence 3579999999863
No 141
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.57 E-value=2.2 Score=23.32 Aligned_cols=13 Identities=38% Similarity=0.876 Sum_probs=8.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eoz_A 10 EKPYSCNVCGKAF 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeECcccChhh
Confidence 3468888887653
No 142
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.51 E-value=3.1 Score=22.44 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eop_A 10 EKPHECRECGKSF 22 (46)
T ss_dssp CCSCBCTTTCCBC
T ss_pred CCCeeCCCCCchh
Confidence 3579999999863
No 143
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.37 E-value=3.2 Score=22.67 Aligned_cols=13 Identities=31% Similarity=0.641 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eom_A 10 ERGHRCSDCGKFF 22 (46)
T ss_dssp CSSCCCSSSCCCC
T ss_pred CCCcCCCCCCCee
Confidence 4578999998763
No 144
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Probab=60.36 E-value=2.7 Score=26.82 Aligned_cols=33 Identities=18% Similarity=0.418 Sum_probs=21.1
Q ss_pred hhcccccCCCCceeeEE--------e--eeeeeee--CCCCeeEe
Q 045338 75 QHSKYFCEFCGKYAVKR--------K--AVGIWGC--KDCGKVKA 107 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR--------~--avGIW~C--kkCgkt~A 107 (134)
...+|.|+.||+.-... . +..-+.| ..|++.|.
T Consensus 63 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~ 107 (119)
T 2jp9_A 63 GVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA 107 (119)
T ss_dssp CCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEES
T ss_pred CCCCccCCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccC
Confidence 34568888888764211 1 2234888 78888775
No 145
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.36 E-value=2.9 Score=22.61 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yrj_A 10 EKPYRCGECGKAF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCeECCCCCCcc
Confidence 3568888888753
No 146
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.14 E-value=3.4 Score=22.48 Aligned_cols=13 Identities=38% Similarity=0.841 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em6_A 10 EKCYKCDVCGKEF 22 (46)
T ss_dssp CCCCBCSSSCCBC
T ss_pred CCCeECCCCCccc
Confidence 3578999998753
No 147
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=60.10 E-value=2.9 Score=22.67 Aligned_cols=13 Identities=38% Similarity=0.741 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep3_A 10 EKPYRCAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 3568899888763
No 148
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Probab=59.83 E-value=2.7 Score=27.18 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=22.9
Q ss_pred hhcccccCCCCceeeEE----------eeeeeeeeC--CCCeeEec
Q 045338 75 QHSKYFCEFCGKYAVKR----------KAVGIWGCK--DCGKVKAG 108 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR----------~avGIW~Ck--kCgkt~AG 108 (134)
...+|.|+.||+.-..+ .+...+.|. .|++.|..
T Consensus 31 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~ 76 (124)
T 1ubd_C 31 GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSL 76 (124)
T ss_dssp SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCSTTCCCEESC
T ss_pred CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCCCCCcCccCC
Confidence 44679999999864211 133568996 49998853
No 149
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=59.37 E-value=3.5 Score=22.40 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emk_A 10 EKPYECKECGKAF 22 (46)
T ss_dssp SCSCBCSSSCCBC
T ss_pred CCceECCCCCchh
Confidence 4579999999863
No 150
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.35 E-value=3 Score=22.59 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~F 22 (46)
T 2em3_A 10 EKPYECKVCSKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCccc
Confidence 3568888888753
No 151
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.27 E-value=2.7 Score=22.82 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eq0_A 10 EKPYKCHECGKVF 22 (46)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCeECCCCCchh
Confidence 4568888888753
No 152
>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.22 E-value=3.2 Score=22.35 Aligned_cols=12 Identities=33% Similarity=0.730 Sum_probs=9.2
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 10 ~~~~~C~~C~k~ 21 (44)
T 2eou_A 10 KTTSECQECGKI 21 (44)
T ss_dssp SCCCCCTTTCCC
T ss_pred CcCeECCCCCcc
Confidence 357889988875
No 153
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=59.09 E-value=2.5 Score=22.83 Aligned_cols=12 Identities=42% Similarity=0.908 Sum_probs=9.0
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (46)
T 2eq3_A 10 EKPYECNQCGKA 21 (46)
T ss_dssp CCSSEETTTTEE
T ss_pred CCCeECCCCChh
Confidence 356888888875
No 154
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=58.93 E-value=4.7 Score=27.08 Aligned_cols=52 Identities=19% Similarity=0.430 Sum_probs=36.1
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCeeEeccccc--cccchHHHHHHHHHHHHhh
Q 045338 78 KYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYT--LNTASAVTVRSTIRRLREQ 131 (134)
Q Consensus 78 kY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~--p~T~~~~tvk~~Irrl~e~ 131 (134)
-.-|| ||...+-+...=-=.|. ||+++-=.-=. ..+..+.-+..++++|.+.
T Consensus 4 vv~C~-C~~~~~~~~~~kT~~C~-CG~~~~~~k~rif~~~~d~~eA~e~~~~lqa~ 57 (71)
T 1gh9_A 4 IFRCD-CGRALYSREGAKTRKCV-CGRTVNVKDRRIFGRADDFEEASELVRKLQEE 57 (71)
T ss_dssp EEEET-TSCCEEEETTCSEEEET-TTEEEECCSSSCBSCCSSHHHHHHHHHHHSSC
T ss_pred EEECC-CCCEEEEcCCCcEEECC-CCCeeeeceEEEEEecCCHHHHHHHHHHHHhh
Confidence 35699 99987665554445797 99987644322 2477888888888887654
No 155
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Probab=58.86 E-value=3.1 Score=22.54 Aligned_cols=13 Identities=38% Similarity=0.874 Sum_probs=9.3
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ema_A 10 EKRYKCNECGKVF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CcCcCCCCCcchh
Confidence 3568888888753
No 156
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.66 E-value=3.5 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.794 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2ytn_A 10 KKPYKCNECGKVF 22 (46)
T ss_dssp CSSCBCTTTCCBC
T ss_pred CcCeECCCCCCee
Confidence 4579999999863
No 157
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.65 E-value=3.5 Score=22.40 Aligned_cols=13 Identities=23% Similarity=0.470 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2en9_A 10 KKLFKCNECKKTF 22 (46)
T ss_dssp SCCCBCTTTCCBC
T ss_pred CCCEECCccCccc
Confidence 3578999998753
No 158
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.61 E-value=3 Score=22.50 Aligned_cols=13 Identities=46% Similarity=0.835 Sum_probs=9.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eor_A 10 EKPYNCEECGKAF 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CcCccCCCCCCCc
Confidence 3568888888753
No 159
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.51 E-value=3.6 Score=22.27 Aligned_cols=13 Identities=31% Similarity=0.871 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2eoq_A 10 EKPFKCDICGKSF 22 (46)
T ss_dssp SCSCCCSSSCCCC
T ss_pred CCCcCCCcCCchh
Confidence 3579999999763
No 160
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.49 E-value=3.4 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eq4_A 10 EKLYNCKECGKSF 22 (46)
T ss_dssp CCCCCBTTTTBCC
T ss_pred CCCeECCCCCCcc
Confidence 4579999999863
No 161
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.40 E-value=3.2 Score=22.56 Aligned_cols=13 Identities=38% Similarity=0.725 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2eoo_A 10 ERPYGCNECGKNF 22 (46)
T ss_dssp CCCEECSSSCCEE
T ss_pred CCCEEccccCccc
Confidence 3568898888753
No 162
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.37 E-value=3.2 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.524 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2epw_A 10 EKPCKCTECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCCCCcc
Confidence 3568999998763
No 163
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.24 E-value=3.3 Score=22.55 Aligned_cols=13 Identities=31% Similarity=0.700 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em2_A 10 EKPFKCKECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCEECCcCCchh
Confidence 3568888888753
No 164
>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*
Probab=58.19 E-value=3.1 Score=23.71 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.4
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 22 ~k~~~C~~C~k~ 33 (54)
T 1yui_A 22 EQPATCPICYAV 33 (54)
T ss_dssp SCCEECTTTCCE
T ss_pred CCCccCCCCCcc
Confidence 467889998875
No 165
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.18 E-value=3.3 Score=22.45 Aligned_cols=13 Identities=38% Similarity=0.848 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytj_A 10 EKPYICAECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCChhh
Confidence 3578899998763
No 166
>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}
Probab=58.16 E-value=3 Score=23.53 Aligned_cols=13 Identities=38% Similarity=0.971 Sum_probs=9.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 5 ~kp~~C~~C~k~F 17 (48)
T 3iuf_A 5 DKPYACDICGKRY 17 (48)
T ss_dssp TSCEECTTTCCEE
T ss_pred CcCEECCCcCccc
Confidence 3568888888653
No 167
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.16 E-value=2.5 Score=22.93 Aligned_cols=12 Identities=33% Similarity=0.905 Sum_probs=8.6
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 10 ~k~~~C~~C~k~ 21 (45)
T 2epu_A 10 QKPFECTHCGKS 21 (45)
T ss_dssp CCSEEETTTTEE
T ss_pred CcCccCCCCCCc
Confidence 356888888775
No 168
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Probab=58.16 E-value=3.3 Score=22.33 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2el4_A 10 VKPYGCSQCAKTF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCceECCCCCchh
Confidence 3578999998764
No 169
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=58.12 E-value=3.9 Score=30.78 Aligned_cols=28 Identities=29% Similarity=0.515 Sum_probs=14.0
Q ss_pred cCchhhHhHHHHHHhhh----cccccCCCCce
Q 045338 60 YGASLRKQIKKMEVSQH----SKYFCEFCGKY 87 (134)
Q Consensus 60 YGaslRK~vkkIE~sqh----akY~CpfCGk~ 87 (134)
....+++.+..|+...- ..|.|+.||-.
T Consensus 116 H~~~~~~~l~~l~~~~~~~~~~~~~C~~CG~i 147 (170)
T 3pwf_A 116 HAELYRKAKEKAEKGEDIEIKKVYICPICGYT 147 (170)
T ss_dssp HHHHHHHHHHHHTTTCCCCCSCEEECTTTCCE
T ss_pred HHHHHHHHHHHHhcCCcCCCCCeeEeCCCCCe
Confidence 34456666666654332 23445555543
No 170
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=58.08 E-value=3.8 Score=22.13 Aligned_cols=13 Identities=38% Similarity=0.659 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (47)
T 2epx_A 10 KKPYECIECGKAF 22 (47)
T ss_dssp CCSBCCSSSCCCB
T ss_pred CCCEECCccCchh
Confidence 3579999999863
No 171
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A
Probab=57.95 E-value=3.7 Score=22.31 Aligned_cols=13 Identities=31% Similarity=0.575 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ely_A 10 EKPFKCVECGKGF 22 (46)
T ss_dssp CCSBCCSSSCCCB
T ss_pred CCCcccCccCccc
Confidence 3578999999753
No 172
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=57.91 E-value=7.7 Score=29.27 Aligned_cols=18 Identities=39% Similarity=1.088 Sum_probs=10.4
Q ss_pred EeeeeeeeeCCCCeeEec
Q 045338 91 RKAVGIWGCKDCGKVKAG 108 (134)
Q Consensus 91 R~avGIW~CkkCgkt~AG 108 (134)
+...-+|.|..||+++-|
T Consensus 150 ~~~~~~~~C~~CG~~~~g 167 (191)
T 1lko_A 150 REQATKWRCRNCGYVHEG 167 (191)
T ss_dssp EEEEEEEEETTTCCEEEE
T ss_pred cCCCceEEECCCCCEeeC
Confidence 334446666666666654
No 173
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=57.80 E-value=3.7 Score=22.22 Aligned_cols=13 Identities=15% Similarity=0.432 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2em0_A 10 EKTWKCRECDMCF 22 (46)
T ss_dssp CCCCCCSSSCCCC
T ss_pred CcCeECCCCCccc
Confidence 4579999999863
No 174
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.77 E-value=3.4 Score=22.31 Aligned_cols=13 Identities=38% Similarity=1.124 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eme_A 10 EKPYVCDYCGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECCCCChhh
Confidence 3578899998763
No 175
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.67 E-value=3.2 Score=22.49 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emh_A 10 ERPYICTVCGKAF 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCcCCCCCCchh
Confidence 3578899998763
No 176
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Probab=57.67 E-value=3.4 Score=22.30 Aligned_cols=13 Identities=38% Similarity=0.782 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em9_A 10 EKPYNCKECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCcccccc
Confidence 3578899998763
No 177
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=57.58 E-value=3.8 Score=22.11 Aligned_cols=13 Identities=23% Similarity=0.680 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (43)
T 2yrm_A 8 NGAFFCNECDCRF 20 (43)
T ss_dssp SCCBCCSSSCCCB
T ss_pred CCCEECCCCCCee
Confidence 3578899888753
No 178
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.48 E-value=3.6 Score=22.26 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2epz_A 10 EKPFDCIDCGKAF 22 (46)
T ss_dssp CCSBCCTTTCCCB
T ss_pred CCCeECCCCCcee
Confidence 3579999999863
No 179
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.45 E-value=3.6 Score=22.20 Aligned_cols=13 Identities=38% Similarity=0.761 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytr_A 10 EKPYKCNECGKAF 22 (46)
T ss_dssp CCTTCCTTTCCCC
T ss_pred CcCcCCCCCCCcc
Confidence 4579999999863
No 180
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.25 E-value=4 Score=22.15 Aligned_cols=13 Identities=38% Similarity=0.695 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytq_A 10 EKPYGCSECGKAF 22 (46)
T ss_dssp CCSCBCSSSCCBC
T ss_pred CCCcCCCccChhh
Confidence 4579999999863
No 181
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=57.20 E-value=5.7 Score=31.41 Aligned_cols=27 Identities=22% Similarity=0.564 Sum_probs=19.4
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
-.||.||.......+--...|..|+..
T Consensus 108 ~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 108 KYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp SBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred CccccCCCcCccCCCceeeeCCCCCCE
Confidence 369999988766555556688888763
No 182
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.18 E-value=3.5 Score=22.33 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ene_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp SSSEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 3578899998753
No 183
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.15 E-value=3.5 Score=22.33 Aligned_cols=13 Identities=46% Similarity=0.784 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em7_A 10 EKPYKCEECGKGF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCccCCCccchh
Confidence 3578999998753
No 184
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=57.13 E-value=3.5 Score=22.33 Aligned_cols=13 Identities=38% Similarity=0.830 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2eml_A 10 EKPYECSVCGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCcCCcc
Confidence 3578899988753
No 185
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.99 E-value=3.5 Score=22.31 Aligned_cols=13 Identities=38% Similarity=0.754 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emy_A 10 ENPYECHECGKAF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CcCcCCCCCCccc
Confidence 3568888888753
No 186
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.83 E-value=3.6 Score=22.38 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2emf_A 10 GKHFECTECGKAF 22 (46)
T ss_dssp SCCEECSSSCCEE
T ss_pred CCCeECCCCCchh
Confidence 3578899998764
No 187
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.63 E-value=3.8 Score=22.37 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.0
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytm_A 10 EKPYKCMECGKAF 22 (46)
T ss_dssp CCSSSBTTTTBCC
T ss_pred CCCcCCCCCCchh
Confidence 3579999999863
No 188
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.60 E-value=4.2 Score=22.07 Aligned_cols=13 Identities=46% Similarity=0.771 Sum_probs=10.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~F 22 (46)
T 2elz_A 10 EKPYKCEDCGKGY 22 (46)
T ss_dssp CSSCBCSSSCCBC
T ss_pred CCCeeCcccCchh
Confidence 4579999999863
No 189
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=56.50 E-value=2.5 Score=32.54 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=15.4
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCCe
Q 045338 77 SKYFCEFCGKYAVKRKAVGIWGCKDCGK 104 (134)
Q Consensus 77 akY~CpfCGk~~VKR~avGIW~CkkCgk 104 (134)
..|.|+.||-.-. +.--|.|.-||.
T Consensus 170 ~~~~C~~CG~i~~---g~~p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICGYIHK---GEDFEKCPICFR 194 (202)
T ss_dssp CEEECSSSCCEEE---SSCCSBCTTTCC
T ss_pred cEEEECCCCCEEc---CcCCCCCCCCCC
Confidence 4677888886532 122288887864
No 190
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.22 E-value=3.8 Score=21.98 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (44)
T 2emx_A 8 EKPFGCSCCEKAF 20 (44)
T ss_dssp CCCEECSSSSCEE
T ss_pred CcCccCCCCCccc
Confidence 3568888888753
No 191
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.07 E-value=3.7 Score=22.21 Aligned_cols=13 Identities=38% Similarity=0.715 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2enc_A 10 EKPFKCEECGKGF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCcCCCCCCCcC
Confidence 3578899998764
No 192
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=56.07 E-value=3.5 Score=22.30 Aligned_cols=13 Identities=31% Similarity=0.659 Sum_probs=9.9
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ytg_A 10 EKPFKCGECGKSY 22 (46)
T ss_dssp CCSEECTTTCCEE
T ss_pred CCCeECCCCCccc
Confidence 4578999998764
No 193
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=55.71 E-value=3 Score=24.86 Aligned_cols=11 Identities=18% Similarity=0.280 Sum_probs=6.2
Q ss_pred eeeeCCCCeeE
Q 045338 96 IWGCKDCGKVK 106 (134)
Q Consensus 96 IW~CkkCgkt~ 106 (134)
-+.|..|++.|
T Consensus 68 ~~~C~~C~k~F 78 (79)
T 2dlk_A 68 DYICEFSGPSS 78 (79)
T ss_dssp CCSCCSSSCCC
T ss_pred CeeCCCCCCCC
Confidence 35666666554
No 194
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.47 E-value=3.9 Score=22.14 Aligned_cols=13 Identities=38% Similarity=0.825 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emp_A 10 VKPYMCNECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCchh
Confidence 3568899998763
No 195
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.31 E-value=3 Score=22.40 Aligned_cols=11 Identities=45% Similarity=0.984 Sum_probs=7.8
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 11 ~~~~C~~C~k~ 21 (44)
T 2eox_A 11 KSYNCNECGKA 21 (44)
T ss_dssp CCEEETTTTEE
T ss_pred CCeECcccCcc
Confidence 46778888764
No 196
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}
Probab=55.20 E-value=4 Score=22.18 Aligned_cols=13 Identities=31% Similarity=0.554 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2el6_A 10 VNPYKCSQCEKSF 22 (46)
T ss_dssp CCSEECSSSSCEE
T ss_pred CCCeECCCCCccc
Confidence 3578999998863
No 197
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=55.07 E-value=4 Score=22.09 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2yu8_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp CSSEECSSSCCEE
T ss_pred CCCeECCcCCchh
Confidence 4568899998763
No 198
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=55.06 E-value=4 Score=22.18 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2em5_A 10 TKSHQCHECGRGF 22 (46)
T ss_dssp SCSEECSSSCCEE
T ss_pred CCCeECCcCCCcc
Confidence 3578899998763
No 199
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=55.05 E-value=8 Score=29.20 Aligned_cols=41 Identities=17% Similarity=0.333 Sum_probs=26.5
Q ss_pred chhhHhHHHHHHhhh------cccccCCCCceeeEEeeeeeeeeCCCCe
Q 045338 62 ASLRKQIKKMEVSQH------SKYFCEFCGKYAVKRKAVGIWGCKDCGK 104 (134)
Q Consensus 62 aslRK~vkkIE~sqh------akY~CpfCGk~~VKR~avGIW~CkkCgk 104 (134)
..+++.+++|+...- ..|.|+.||-.-.-...= -.|+-||.
T Consensus 133 ~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p--~~CP~C~~ 179 (191)
T 1lko_A 133 KRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAP--ELCPACAH 179 (191)
T ss_dssp HHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECC--SBCTTTCC
T ss_pred HHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCC--CCCCCCcC
Confidence 345666777776432 379999999874422211 28999985
No 200
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=54.90 E-value=5.8 Score=28.92 Aligned_cols=51 Identities=8% Similarity=0.088 Sum_probs=29.4
Q ss_pred cCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccc
Q 045338 54 GKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 54 GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGA 110 (134)
|.+-.=--..|+.-...+.... ++=|..-.--..-+.|.|..||+.|.+..
T Consensus 34 G~ls~v~~e~l~faf~~~~~gt------~~e~A~L~i~~~p~~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 34 GELQDVAEDIVKFAMEQLFAGT------IAEGAEIEFVEEEAVFKCRNCNYEWKLKE 84 (139)
T ss_dssp ETTCCCCHHHHHHHHHHHHTTS------TTTTCEEEEEEECCEEEETTTCCEEEGGG
T ss_pred HHHhhhhHHHHHHHHHHHHcCC------cccCCEEEEEecCCcEECCCCCCEEeccc
Confidence 3333333456777766553322 11122322224557899999999999866
No 201
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.70 E-value=4.1 Score=22.05 Aligned_cols=13 Identities=38% Similarity=0.861 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ep2_A 10 EKPYECSICGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCcCCCCCCccc
Confidence 3568899888753
No 202
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.51 E-value=4.6 Score=21.92 Aligned_cols=13 Identities=38% Similarity=0.769 Sum_probs=10.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytt_A 10 EKPYQCSECGKSF 22 (46)
T ss_dssp CCTTCCSSSCCCC
T ss_pred CCCeeCCCCCccc
Confidence 4579999999863
No 203
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=54.51 E-value=8.6 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=19.7
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.||.|+.+-.--...|-=.|..|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 9 LVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 4799999875433345666899998654
No 204
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.49 E-value=4.1 Score=22.12 Aligned_cols=13 Identities=38% Similarity=0.646 Sum_probs=9.8
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2em8_A 10 EKPYKCVECGKGY 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeECcccCchh
Confidence 4578899998764
No 205
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=54.22 E-value=4.2 Score=21.91 Aligned_cols=13 Identities=31% Similarity=0.506 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2emm_A 10 ERPHKCNECGKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCCCCChhh
Confidence 3568888888763
No 206
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=54.20 E-value=7.1 Score=27.94 Aligned_cols=51 Identities=24% Similarity=0.485 Sum_probs=36.0
Q ss_pred CCccccCchhhHhHHHHHHhhhccc---ccCCCCcee------eEEeeee-----eeeeCCCCee
Q 045338 55 KYGTRYGASLRKQIKKMEVSQHSKY---FCEFCGKYA------VKRKAVG-----IWGCKDCGKV 105 (134)
Q Consensus 55 kfGtRYGaslRK~vkkIE~sqhakY---~CpfCGk~~------VKR~avG-----IW~CkkCgkt 105 (134)
-...+|+..++....+-.+...... .|..||..- --|+..| ++.|..||.+
T Consensus 39 ~lSr~Y~~~~~~is~k~~irlp~~~KR~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~ 103 (120)
T 1x0t_A 39 DLAKRYVELALEIQKKAKVKIPRKWKRRYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYI 103 (120)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCTTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCE
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 3456888888888887777665543 699998743 2344444 8999999965
No 207
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=53.68 E-value=8.7 Score=25.37 Aligned_cols=28 Identities=4% Similarity=-0.090 Sum_probs=19.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.||.|+.+-.--...|-=.|+.|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 9 LVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4799999864333344666899998654
No 208
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=53.40 E-value=4.4 Score=21.91 Aligned_cols=13 Identities=38% Similarity=0.789 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ytk_A 10 EKPYKCNECGKVF 22 (46)
T ss_dssp SCSEECSSSCCEE
T ss_pred CCCEeCCcCCCcc
Confidence 3568888888753
No 209
>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.21 E-value=4.2 Score=21.98 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=9.6
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2yso_A 10 EKSHQCRECGEIF 22 (46)
T ss_dssp CCCEECTTTCCEE
T ss_pred CCCEEccccChhh
Confidence 3578899888753
No 210
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=53.20 E-value=4.2 Score=21.89 Aligned_cols=13 Identities=31% Similarity=0.618 Sum_probs=9.7
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en8_A 10 EKSHTCDECGKNF 22 (46)
T ss_dssp CSSEECTTTCCEE
T ss_pred CCCeECCCcCccc
Confidence 3568899998764
No 211
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=53.19 E-value=8.6 Score=25.41 Aligned_cols=28 Identities=21% Similarity=0.216 Sum_probs=19.5
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.||.|+.+-.--...|-=.|..|+..|
T Consensus 9 L~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 9 LVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp CBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred eECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 4799999864333344666899998654
No 212
>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*
Probab=52.90 E-value=28 Score=27.59 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=22.4
Q ss_pred ccccCCCCceeeE------------------------EeeeeeeeeCCCCeeEecc
Q 045338 78 KYFCEFCGKYAVK------------------------RKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 78 kY~CpfCGk~~VK------------------------R~avGIW~CkkCgkt~AGG 109 (134)
...||.||.. .. +-..-++.|..|+..+..-
T Consensus 12 ~~~C~~Cg~~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l~~~~C~~Cg~v~~~~ 66 (416)
T 4e2x_A 12 PTACRVCGGG-VQEFLDLGRQPLSDRFRKPDELDDEFTYRLAVGRCDSCEMVQLTE 66 (416)
T ss_dssp CEECTTTSCE-EEEEEEEEEEECTTCCBCTTSCSCCCEEEEEEEEETTTCCEEESS
T ss_pred CCcCCCCCCe-eeeeeECCCCCccccCCChhhcCccceecceEEECCCCCceeecC
Confidence 4679999988 32 2234578999999887653
No 213
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.72 E-value=4.6 Score=21.84 Aligned_cols=13 Identities=38% Similarity=0.743 Sum_probs=9.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ytd_A 10 EKPYKCSECGKAF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CcCeECCCCCCee
Confidence 3578899888753
No 214
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=52.55 E-value=19 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.498 Sum_probs=21.5
Q ss_pred hcccccCCCCceeeE------Ee----eeeeeeeCCCCeeE
Q 045338 76 HSKYFCEFCGKYAVK------RK----AVGIWGCKDCGKVK 106 (134)
Q Consensus 76 hakY~CpfCGk~~VK------R~----avGIW~CkkCgkt~ 106 (134)
-....||.||....- |. .+=...|.+||..|
T Consensus 7 t~~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~~w 47 (50)
T 1tfi_A 7 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRW 47 (50)
T ss_dssp CCCSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCCEE
T ss_pred eCccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCCeE
Confidence 345689999987531 11 24578999999875
No 215
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=52.44 E-value=3.5 Score=22.31 Aligned_cols=13 Identities=46% Similarity=0.802 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~k~~~C~~C~k~f 22 (46)
T 2ysp_A 10 EKPYKCEKCGKGY 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeECCCCCCcc
Confidence 3568888888753
No 216
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=52.32 E-value=8.4 Score=25.53 Aligned_cols=29 Identities=14% Similarity=0.044 Sum_probs=19.9
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
--.||.|+.+-.--...|-=.|+.|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 35799999775332344666899998654
No 217
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=52.04 E-value=8.5 Score=27.76 Aligned_cols=50 Identities=22% Similarity=0.459 Sum_probs=34.8
Q ss_pred CccccCchhhHhHHHHHHhhhccc---ccCCCCcee------eEEeeee-----eeeeCCCCee
Q 045338 56 YGTRYGASLRKQIKKMEVSQHSKY---FCEFCGKYA------VKRKAVG-----IWGCKDCGKV 105 (134)
Q Consensus 56 fGtRYGaslRK~vkkIE~sqhakY---~CpfCGk~~------VKR~avG-----IW~CkkCgkt 105 (134)
...+|+..++....+-.+...... .|..||..- --|+..+ ++.|..||.+
T Consensus 35 LSr~Y~~~~~~Is~K~~irlp~~~KR~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~ 98 (123)
T 2k3r_A 35 LAKRYVELALLVQQKAKVKIPRKWKRRYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHI 98 (123)
T ss_dssp HHHHHHHHHHHHHHHHTCCCSSTTTTSBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEE
T ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCE
Confidence 345788888887777777665544 699998743 2344444 8999999965
No 218
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=51.49 E-value=4.8 Score=21.73 Aligned_cols=13 Identities=31% Similarity=0.713 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2ep0_A 10 EKPYKCDVCHKSF 22 (46)
T ss_dssp CCSEECSSSCCEE
T ss_pred CCCeeCcccCccc
Confidence 3568888888753
No 219
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=51.32 E-value=9.3 Score=23.28 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=25.2
Q ss_pred ccCCCCceee--E---Eeeeeeee-------eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV--K---RKAVGIWG-------CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V--K---R~avGIW~-------CkkCgkt~AGGAy~p 113 (134)
.|+.|++... . +..-..|| |..|++.+.|..|..
T Consensus 4 ~C~~C~~~I~~~~~~v~a~~~~wH~~~~CF~C~~C~~~L~~~~f~~ 49 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 49 (65)
T ss_dssp ECTTTSSEECTTSCEEEETTEEEETTTTTSBCTTTCCBCTTSCCEE
T ss_pred CCcCCCCeeccCceEEEECCCccCCCCCCEECCCCCCcCCCCceEE
Confidence 5999998754 1 12335899 999999999887754
No 220
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=51.15 E-value=3.6 Score=22.28 Aligned_cols=13 Identities=31% Similarity=0.715 Sum_probs=9.4
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 8 ~k~~~C~~C~k~f 20 (45)
T 2epq_A 8 EKPYSCPVCGLRF 20 (45)
T ss_dssp CCSSEETTTTEEC
T ss_pred CCCCcCCCCCccc
Confidence 3578888888763
No 221
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.97 E-value=1.6 Score=27.08 Aligned_cols=11 Identities=27% Similarity=0.232 Sum_probs=6.4
Q ss_pred eeeCCCCeeEe
Q 045338 97 WGCKDCGKVKA 107 (134)
Q Consensus 97 W~CkkCgkt~A 107 (134)
+.|..|++.|.
T Consensus 63 ~~C~~C~k~f~ 73 (95)
T 2ej4_A 63 EECPREGKSFK 73 (95)
T ss_dssp TTCSSTTCCCS
T ss_pred cCCCCCCcccC
Confidence 45666666553
No 222
>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33
Probab=50.64 E-value=8.1 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.425 Sum_probs=17.3
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCe
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGK 104 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgk 104 (134)
+.||.|+..... .-+.|+|..|..
T Consensus 3 ~~Cp~C~~~~~~--~~~~~~C~~~~~ 26 (269)
T 1p91_A 3 FSCPLCHQPLSR--EKNSYICPQRHQ 26 (269)
T ss_dssp BBCTTTCCBCEE--ETTEEECTTCCE
T ss_pred ccCCCCCcccee--CCCEEECCCCCc
Confidence 689999876433 235799999863
No 223
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=50.44 E-value=7.1 Score=29.72 Aligned_cols=29 Identities=24% Similarity=0.607 Sum_probs=21.2
Q ss_pred ccccCCCCceeeE------Ee----eeeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAVK------RK----AVGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~VK------R~----avGIW~CkkCgkt~ 106 (134)
.+.||.||....- |. .+-...|..||..|
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~~w 175 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGNRW 175 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCCEE
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCCee
Confidence 4689999987531 11 35688999999886
No 224
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A
Probab=50.15 E-value=6.2 Score=19.33 Aligned_cols=10 Identities=40% Similarity=1.401 Sum_probs=6.8
Q ss_pred ccccC--CCCce
Q 045338 78 KYFCE--FCGKY 87 (134)
Q Consensus 78 kY~Cp--fCGk~ 87 (134)
+|.|+ .||+.
T Consensus 2 p~~C~~~~C~k~ 13 (31)
T 1sp2_A 2 PFMCTWSYCGKR 13 (31)
T ss_dssp CCBCCSTTCCCB
T ss_pred CcCCcCCCCCcc
Confidence 57776 67764
No 225
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.93 E-value=4.6 Score=27.47 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=8.1
Q ss_pred ccccCCCCcee
Q 045338 78 KYFCEFCGKYA 88 (134)
Q Consensus 78 kY~CpfCGk~~ 88 (134)
.-.||.||.+-
T Consensus 47 g~~CPvCgs~l 57 (112)
T 1l8d_A 47 KGKCPVCGREL 57 (112)
T ss_dssp SEECTTTCCEE
T ss_pred CCCCCCCCCcC
Confidence 34699998763
No 226
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.72 E-value=4.2 Score=22.01 Aligned_cols=13 Identities=38% Similarity=0.720 Sum_probs=9.1
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en6_A 10 EKPYGCNECGKTF 22 (46)
T ss_dssp SCCEEETTTTEEE
T ss_pred CcCeECCCCCccc
Confidence 3568888888753
No 227
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=49.69 E-value=4.5 Score=21.79 Aligned_cols=12 Identities=42% Similarity=0.919 Sum_probs=9.2
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 10 ~~~~~C~~C~k~ 21 (46)
T 2eoe_A 10 EKPYKCNECGKV 21 (46)
T ss_dssp CCSSEETTTTEE
T ss_pred CCCeECCCcChh
Confidence 357889999875
No 228
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=49.19 E-value=6.5 Score=29.69 Aligned_cols=44 Identities=18% Similarity=0.405 Sum_probs=26.0
Q ss_pred chhhHhHHHHHHhhhccc-ccCCCCcee--eEEe-eeeeeeeCCCCee
Q 045338 62 ASLRKQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIWGCKDCGKV 105 (134)
Q Consensus 62 aslRK~vkkIE~sqhakY-~CpfCGk~~--VKR~-avGIW~CkkCgkt 105 (134)
+---+.+.++-..=-.+| .||.|+.+. +.+. ..=.=+|..||..
T Consensus 87 ~~~~~~i~~~L~~yI~~yVlC~~C~sPdT~L~k~~r~~~l~C~ACGa~ 134 (148)
T 2d74_B 87 RFTPYLIANKLKKYIKEYVICPVCGSPDTKIIKRDRFHFLKCEACGAE 134 (148)
T ss_dssp CCCHHHHHHHHHHHHHHHSSCSSSCCTTCCCCBSSSSBCCCCSSSCCC
T ss_pred eeCHHHHHHHHHHHHHHEEECCCCCCcCcEEEEeCCEEEEEecCCCCC
Confidence 333455555555555666 699999864 3332 2223378889753
No 229
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=48.66 E-value=4.2 Score=23.31 Aligned_cols=17 Identities=41% Similarity=0.649 Sum_probs=14.5
Q ss_pred cccCchhhHhHHHHHHh
Q 045338 58 TRYGASLRKQIKKMEVS 74 (134)
Q Consensus 58 tRYGaslRK~vkkIE~s 74 (134)
.|||+-||+|-.+.+.+
T Consensus 9 ~rYGReLRRMSDEF~~s 25 (27)
T 2bzw_B 9 QRYGRELRRMSDEFEGS 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHhHHHHHHhHHHHhh
Confidence 47999999999988764
No 230
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=48.16 E-value=11 Score=22.59 Aligned_cols=34 Identities=18% Similarity=0.330 Sum_probs=25.1
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCeeEeccccc
Q 045338 79 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYT 112 (134)
Q Consensus 79 Y~CpfCGk~~V-----KR~avGIW~-----CkkCgkt~AGGAy~ 112 (134)
-.|+.|++... -+..-..|| |..|++.+.++.|.
T Consensus 12 ~~C~~C~~~i~~~e~~~~~~~~~~H~~CF~C~~C~~~L~~~~~~ 55 (72)
T 3f6q_B 12 ATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFY 55 (72)
T ss_dssp CBCTTTCCBCCTTCEEEEETTEEEETTTSSCTTTCCCCGGGCCE
T ss_pred ccchhcCccccCCceEEEeCcCeeCcCCCcccCCCCCCCCCCeE
Confidence 36999998643 234446897 88999999888664
No 231
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=47.46 E-value=4.7 Score=21.77 Aligned_cols=13 Identities=38% Similarity=0.771 Sum_probs=9.2
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 10 ~~~~~C~~C~k~f 22 (46)
T 2en1_A 10 EKPFKCEECGKRF 22 (46)
T ss_dssp CCSEEETTTTEEE
T ss_pred CCCeeCCCCCccc
Confidence 3568888888753
No 232
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=46.35 E-value=20 Score=24.93 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=24.4
Q ss_pred cCCccccCchhhHhHHHHHHhhhcccccCCC-CceeeEEeeeeeeeeCCCCeeEeccc
Q 045338 54 GKYGTRYGASLRKQIKKMEVSQHSKYFCEFC-GKYAVKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 54 GkfGtRYGaslRK~vkkIE~sqhakY~CpfC-Gk~~VKR~avGIW~CkkCgkt~AGGA 110 (134)
|.+-.---.+|+.-...++... |.+ |..-.-...-+.|.|..||+.|.+..
T Consensus 36 G~ls~v~~e~l~f~f~~~~~gt------~~~e~a~L~i~~~p~~~~C~~CG~~~e~~~ 87 (119)
T 2kdx_A 36 GERSAMDKSLFVSAFETFREES------LVCKDAILDIVDEKVELECKDCSHVFKPNA 87 (119)
T ss_dssp ETTSCCCHHHHHHHHHHHGGGC------TTTSSCCEEEEEECCEEECSSSSCEECSCC
T ss_pred ehhccccHHHHHHHHHHHHhCC------hhhcCcEEEEEeccceEEcCCCCCEEeCCC
Confidence 3333333356666666553332 011 12222234445677777777666543
No 233
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=46.11 E-value=4.2 Score=26.81 Aligned_cols=13 Identities=31% Similarity=0.697 Sum_probs=10.3
Q ss_pred hhcccccCCCCce
Q 045338 75 QHSKYFCEFCGKY 87 (134)
Q Consensus 75 qhakY~CpfCGk~ 87 (134)
..++|+||.|+..
T Consensus 23 ~~akY~CPrC~~r 35 (59)
T 1x4s_A 23 QPARYTCPRCNAP 35 (59)
T ss_dssp EEECEECTTTCCE
T ss_pred CCccccCcCCCCC
Confidence 5689999999854
No 234
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A
Probab=45.36 E-value=5.5 Score=18.80 Aligned_cols=6 Identities=33% Similarity=1.038 Sum_probs=2.8
Q ss_pred CCCeeE
Q 045338 101 DCGKVK 106 (134)
Q Consensus 101 kCgkt~ 106 (134)
.|++.|
T Consensus 9 ~C~k~f 14 (29)
T 2ab3_A 9 NCGRSF 14 (29)
T ss_dssp TTCEEE
T ss_pred cCcCcc
Confidence 444444
No 235
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=44.29 E-value=12 Score=25.79 Aligned_cols=32 Identities=28% Similarity=0.570 Sum_probs=23.5
Q ss_pred hhcccccCC--CCceeeEEeeeeeeeeCCCCeeEecccc
Q 045338 75 QHSKYFCEF--CGKYAVKRKAVGIWGCKDCGKVKAGGAY 111 (134)
Q Consensus 75 qhakY~Cpf--CGk~~VKR~avGIW~CkkCgkt~AGGAy 111 (134)
...++.|++ |.+..+ .++ .|+.|+..|-+-=-
T Consensus 22 ~~~~~~C~~~~Ck~~~~----l~f-~C~~C~~~FC~~HR 55 (86)
T 1wfe_A 22 EHKSYSCSFKGCTDVEL----VAV-ICPYCEKNFCLRHR 55 (86)
T ss_dssp CSCCEECCSTTCCCEES----SCE-ECTTTCCEECGGGC
T ss_pred CCCCCCCCCcCCCCCCc----cce-ECCCCCcccccccC
Confidence 345678999 998754 444 99999999866433
No 236
>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.86 E-value=9.5 Score=22.36 Aligned_cols=31 Identities=23% Similarity=0.316 Sum_probs=15.4
Q ss_pred cccccCCCCceeeE-------E-eeeeeeeeC-CCCeeEe
Q 045338 77 SKYFCEFCGKYAVK-------R-KAVGIWGCK-DCGKVKA 107 (134)
Q Consensus 77 akY~CpfCGk~~VK-------R-~avGIW~Ck-kCgkt~A 107 (134)
.+|.|++||+.-.+ | .+.--..|. .|++.|.
T Consensus 9 ~~~~C~~C~k~f~~~~L~~H~~~~~~~p~~C~~~C~k~f~ 48 (66)
T 2eod_A 9 RTQPCTYCTKEFVFDTIQSHQYQCPRLPVACPNQCGVGTV 48 (66)
T ss_dssp CEEECSSSCCEEEHHHHHHHHHHCSSSEEECTTCCSCCEE
T ss_pred CCeeccccCCccCHHHHHHHHHHcCCcCccCCcccCcccc
Confidence 45666666655310 0 112245666 6666554
No 237
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=43.77 E-value=14 Score=24.37 Aligned_cols=29 Identities=3% Similarity=-0.229 Sum_probs=20.2
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-..||.|..+-.--...|-=.|+.|+..|
T Consensus 10 iL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 10 VLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 34799999875443445666899998654
No 238
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=43.43 E-value=2.4 Score=28.78 Aligned_cols=39 Identities=28% Similarity=0.717 Sum_probs=26.9
Q ss_pred chhhHhHHHHHHhhhcccccCCCCceeeEEeeeee-eeeCCCCe
Q 045338 62 ASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGI-WGCKDCGK 104 (134)
Q Consensus 62 aslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGI-W~CkkCgk 104 (134)
++|..+...-+...|..+.|..|++.-+. |+ |+|..|..
T Consensus 5 ~~~~~~~~~~~~~~H~~~~Cd~C~~~pI~----G~RykC~~C~d 44 (82)
T 2fc7_A 5 SSGQQMQAESGFVQHVGFKCDNCGIEPIQ----GVRWHCQDCPP 44 (82)
T ss_dssp CCCSSSCSSTTSCEESSCCCSSSCCSSEE----SCEEEESSSCS
T ss_pred cchhhhhccccCCeeCcCCCCCCCCCcce----eceEECCcCCC
Confidence 44555555556667888999999975322 22 99999964
No 239
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=43.26 E-value=18 Score=29.44 Aligned_cols=29 Identities=28% Similarity=0.649 Sum_probs=20.6
Q ss_pred ccccCCCCceeeE------Eee----eeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAVK------RKA----VGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~VK------R~a----vGIW~CkkCgkt~ 106 (134)
.+.||.||...+- |.+ +=...|-.||..|
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~~w 306 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGNRW 306 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCCce
Confidence 5899999987632 222 3368899999875
No 240
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=43.16 E-value=7.1 Score=28.12 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=16.2
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 80 FCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 80 ~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
.||.||....- .-=+.|.+||+.
T Consensus 18 lCrRCG~~sfH---~qK~~CgkCGYp 40 (97)
T 2zkr_2 18 LCRRCGSKAYH---LQKSTCGKCGYP 40 (97)
T ss_dssp CCTTTCSSCEE---TTSCCBTTTCTT
T ss_pred cCCCCCCccCc---CccccCcccCCc
Confidence 69999987642 123689999864
No 241
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=42.81 E-value=9.5 Score=28.35 Aligned_cols=41 Identities=20% Similarity=0.495 Sum_probs=24.9
Q ss_pred hHhHHHHHHhhhccc-ccCCCCcee--eEEe-eeeeeeeCCCCee
Q 045338 65 RKQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIWGCKDCGKV 105 (134)
Q Consensus 65 RK~vkkIE~sqhakY-~CpfCGk~~--VKR~-avGIW~CkkCgkt 105 (134)
-+.+.++-..=-.+| .||.|+.+. +.+. ..=.=+|..||..
T Consensus 88 ~~~i~~~L~~yI~~yVlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 88 HFLINERIEDYVNKFVICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp SSHHHHHHHHHHTHHHHHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred HHHHHHHHHHHHhhEEECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 345555555555666 699999874 3333 2223479999753
No 242
>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=42.80 E-value=7.9 Score=24.66 Aligned_cols=14 Identities=29% Similarity=0.619 Sum_probs=10.9
Q ss_pred hhcccccCCCCcee
Q 045338 75 QHSKYFCEFCGKYA 88 (134)
Q Consensus 75 qhakY~CpfCGk~~ 88 (134)
...+|.|+.|||.-
T Consensus 10 ~ekpy~C~~CgK~F 23 (66)
T 2epp_A 10 EAGILPCGLCGKVF 23 (66)
T ss_dssp CCCCCCCTTTCCCC
T ss_pred CccCcCCCCCCCcc
Confidence 35689999999864
No 243
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=42.63 E-value=9.2 Score=18.71 Aligned_cols=11 Identities=36% Similarity=0.782 Sum_probs=7.3
Q ss_pred cccccC--CCCce
Q 045338 77 SKYFCE--FCGKY 87 (134)
Q Consensus 77 akY~Cp--fCGk~ 87 (134)
.+|.|+ .||+.
T Consensus 2 k~~~C~~~~C~k~ 14 (32)
T 1zfd_A 2 RPYSCDHPGCDKA 14 (32)
T ss_dssp CSBCCCCTTCCCC
T ss_pred CCCcCcCCCCCCc
Confidence 367787 67764
No 244
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=42.50 E-value=14 Score=28.04 Aligned_cols=33 Identities=12% Similarity=0.220 Sum_probs=24.8
Q ss_pred hhhcccccCCCCceeeEEeeeeeeeeCCCCeeEe
Q 045338 74 SQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 74 sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~A 107 (134)
.|..--.||.|+..-+- +.-..|-|..|+.-|.
T Consensus 23 ~M~~lP~CP~C~seytY-eDg~l~vCPeC~hEW~ 55 (138)
T 2akl_A 23 MVSTLPPCPQCNSEYTY-EDGALLVCPECAHEWS 55 (138)
T ss_dssp CCCCSCCCTTTCCCCCE-ECSSSEEETTTTEEEC
T ss_pred ccccCCCCCCCCCcceE-ecCCeEECCccccccC
Confidence 34444679999998766 3456899999988774
No 245
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=42.49 E-value=30 Score=28.47 Aligned_cols=56 Identities=11% Similarity=0.194 Sum_probs=42.4
Q ss_pred hhcccccCCCCcee---eE---------Ee-------eeeeeeeCC--CCeeEeccccccccchHHHHHHHHHHHHh
Q 045338 75 QHSKYFCEFCGKYA---VK---------RK-------AVGIWGCKD--CGKVKAGGAYTLNTASAVTVRSTIRRLRE 130 (134)
Q Consensus 75 qhakY~CpfCGk~~---VK---------R~-------avGIW~Ckk--Cgkt~AGGAy~p~T~~~~tvk~~Irrl~e 130 (134)
....++||.|...- |. |. ..|-|.|.- |.+.+.-....|+...+..+..+-+|.++
T Consensus 178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r~~~ 254 (267)
T 3htk_C 178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMKESQ 254 (267)
T ss_dssp SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHHHHH
T ss_pred CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHHHHH
Confidence 46678999999753 22 10 236699998 99999999999999999988887665543
No 246
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=42.21 E-value=15 Score=25.40 Aligned_cols=37 Identities=30% Similarity=0.620 Sum_probs=26.2
Q ss_pred cccCCCCceeeEE---------eeeeeeeeCCCCeeEecccccccc
Q 045338 79 YFCEFCGKYAVKR---------KAVGIWGCKDCGKVKAGGAYTLNT 115 (134)
Q Consensus 79 Y~CpfCGk~~VKR---------~avGIW~CkkCgkt~AGGAy~p~T 115 (134)
|+|.-||...-|- .+..--.|=.|+++|-|..|.-.|
T Consensus 11 F~C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F~~~~y~~Ht 56 (79)
T 1wjv_A 11 FTCNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDFWGDDYKSHV 56 (79)
T ss_dssp EEESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEEEGGGTTTCC
T ss_pred EEcCCCCCeeecccchhHHhhCCCCCcEEecccCCeeCCCCEeCEe
Confidence 6788898654331 122345788899999999998766
No 247
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli}
Probab=41.15 E-value=8.8 Score=34.36 Aligned_cols=25 Identities=16% Similarity=0.408 Sum_probs=20.4
Q ss_pred cccccCCCCceeeEEeeeeeeeeCC
Q 045338 77 SKYFCEFCGKYAVKRKAVGIWGCKD 101 (134)
Q Consensus 77 akY~CpfCGk~~VKR~avGIW~Ckk 101 (134)
.+..||.||.+.++-.+.-.|.|..
T Consensus 404 ~P~~CP~Cgs~~~~~~~~~~~rC~n 428 (586)
T 4glx_A 404 FPTHCPVCGSDVERVEGEAVARCTG 428 (586)
T ss_dssp CCSBCTTTCCBEECCTTCSCCEESC
T ss_pred CCCcCCCCCCchhhhhcccccEeCC
Confidence 4678999999988777777899963
No 248
>1h7b_A Anaerobic ribonucleotide-triphosphate reductase large chain; oxidoreductase, allosteric regulation, substrate specificity; 2.45A {Bacteriophage T4} SCOP: c.7.1.3 PDB: 1h79_A* 1h7a_A* 1h78_A 1hk8_A*
Probab=40.98 E-value=5.9 Score=35.51 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=12.1
Q ss_pred chhhHhHHHHHHhhhccc--------ccCCCCceee-EEeeeeeeeeCCCCe
Q 045338 62 ASLRKQIKKMEVSQHSKY--------FCEFCGKYAV-KRKAVGIWGCKDCGK 104 (134)
Q Consensus 62 aslRK~vkkIE~sqhakY--------~CpfCGk~~V-KR~avGIW~CkkCgk 104 (134)
..+++.|+.+.. .-.| .||.||.... ..... -|.|.+||.
T Consensus 518 ~a~~~lv~~~~~--~i~Y~~~n~~~~~C~~CGy~~~~~~~~~-~~~CP~Cg~ 566 (605)
T 1h7b_A 518 KGLEAVWDYAAQ--HLDYFGVNMPVDKCFTCGSTHEMTPTEN-GFVCSICGE 566 (605)
T ss_dssp HHHHHHHHHHHH--HCSEEEEECCEEET------------------------
T ss_pred HHHHHHHHHHHh--CCCeEEeCCCCccCcccCCcCccCcccc-CCcCCCCCC
Confidence 477888888664 3445 5999997542 33322 399999995
No 249
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.74 E-value=21 Score=27.15 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=27.6
Q ss_pred chhhHhHHHHHHhhhccc-ccCCCCcee--eEEe-eeeee--eeCCCCeeE
Q 045338 62 ASLRKQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIW--GCKDCGKVK 106 (134)
Q Consensus 62 aslRK~vkkIE~sqhakY-~CpfCGk~~--VKR~-avGIW--~CkkCgkt~ 106 (134)
+---+.+.++-..=-.+| .||.|+.+. +.+. ..++| +|..||..-
T Consensus 86 ~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~~ 136 (157)
T 2e9h_A 86 SHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYRG 136 (157)
T ss_dssp CCCHHHHHHHHHHHHHHTTSCTTTCCSCCEEEEETTTTEEEEECSSSCCEE
T ss_pred eeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccCCCCCC
Confidence 333455665555555677 699999864 4431 23333 799998653
No 250
>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A
Probab=40.15 E-value=7.6 Score=22.99 Aligned_cols=32 Identities=31% Similarity=0.612 Sum_probs=23.0
Q ss_pred hhcccccCC--CCceeeE--------EeeeeeeeeCC---CCeeEe
Q 045338 75 QHSKYFCEF--CGKYAVK--------RKAVGIWGCKD---CGKVKA 107 (134)
Q Consensus 75 qhakY~Cpf--CGk~~VK--------R~avGIW~Ckk---Cgkt~A 107 (134)
...+|.|+. ||+.-.. +.-.| +.|.. |++.|.
T Consensus 28 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~C~~~~~C~~~f~ 72 (85)
T 2j7j_A 28 QQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YPCKKDDSCSFVGK 72 (85)
T ss_dssp TTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EECCSCSSCCCEES
T ss_pred CCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CCCCCCCCCCCccC
Confidence 346799998 9986421 22345 89999 999885
No 251
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=38.97 E-value=21 Score=22.06 Aligned_cols=23 Identities=30% Similarity=0.683 Sum_probs=17.8
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
-.|..|++... .| .+|+.|+..+
T Consensus 15 t~C~~C~k~i~----~G-~kC~~Ck~~c 37 (49)
T 1kbe_A 15 QVCNVCQKSMI----FG-VKCKHCRLKC 37 (49)
T ss_dssp CCCSSSCCSSC----CE-EEETTTTEEE
T ss_pred cCccccCceeE----Cc-CCCCCCCCcc
Confidence 36999988774 36 6999999764
No 252
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=38.96 E-value=29 Score=21.68 Aligned_cols=36 Identities=17% Similarity=0.296 Sum_probs=25.6
Q ss_pred ccccCCCCceee----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 78 KYFCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 78 kY~CpfCGk~~V----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.-.|+.|++... -+..--.|| |..|++.+.++.|..
T Consensus 7 ~~~C~~C~~~I~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 51 (81)
T 1a7i_A 7 GNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAI 51 (81)
T ss_dssp -CBCSSSCCBCSSTTEEEETTEEEESSSEECSSSCCEECSSCCEE
T ss_pred CCcCcCcCccccCceeEEeCCcccccccCccCCCCCCCCCCCeEe
Confidence 357999998652 223345786 999999999987654
No 253
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=38.25 E-value=8.6 Score=24.87 Aligned_cols=12 Identities=33% Similarity=0.645 Sum_probs=10.0
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
.++|+||.|+-.
T Consensus 21 ~~kY~CPrC~~~ 32 (56)
T 2yqq_A 21 KPKYRCPACRVP 32 (56)
T ss_dssp CCSEECTTTCCE
T ss_pred CCeeeCCCCCCC
Confidence 679999999854
No 254
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=37.96 E-value=15 Score=24.83 Aligned_cols=35 Identities=20% Similarity=0.375 Sum_probs=26.5
Q ss_pred cccCCCCceee-----EEeeeeeee-------eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAV-----KRKAVGIWG-------CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~V-----KR~avGIW~-------CkkCgkt~AGGAy~p 113 (134)
-.|+.|++... -+.....|| |..|++.+.|..|.+
T Consensus 64 ~~C~~C~~~I~~~~~~~~a~~~~~H~~~~CF~C~~C~~~l~~~~f~~ 110 (126)
T 2xqn_T 64 VVCQGCHNAIDPEVQRVTYNNFSWHASTECFLCSCCSKCLIGQKFMP 110 (126)
T ss_dssp CBCTTTCSBCCTTSCEEEETTEEEESSTTTSBCTTTCCBCTTSEEEE
T ss_pred ccCcccCCcCCcCceEEECCCCEeeCCCCCcCcCCCCCccCCCeeEe
Confidence 35999999754 334457899 899999998887754
No 255
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}
Probab=37.94 E-value=9.2 Score=19.80 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=6.2
Q ss_pred cccccCC--CCce
Q 045338 77 SKYFCEF--CGKY 87 (134)
Q Consensus 77 akY~Cpf--CGk~ 87 (134)
.+|.|++ ||+.
T Consensus 7 k~~~C~~~~C~k~ 19 (37)
T 1va1_A 7 KQHICHIQGCGKV 19 (37)
T ss_dssp CCEECCSTTCCCE
T ss_pred CCCCCCCCCCCCc
Confidence 4566664 6653
No 256
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=37.89 E-value=9.5 Score=23.88 Aligned_cols=14 Identities=21% Similarity=0.584 Sum_probs=9.6
Q ss_pred hhhcccccCCCCce
Q 045338 74 SQHSKYFCEFCGKY 87 (134)
Q Consensus 74 sqhakY~CpfCGk~ 87 (134)
-...+|.|+.||+.
T Consensus 39 c~~~~~~C~~C~~~ 52 (75)
T 2d9k_A 39 CGARTELCGNCGRN 52 (75)
T ss_dssp HHHCEEECSSSCCE
T ss_pred cCCCceEcccCCCc
Confidence 44567778888775
No 257
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}
Probab=37.68 E-value=8.4 Score=22.65 Aligned_cols=33 Identities=24% Similarity=0.513 Sum_probs=18.6
Q ss_pred hhcccccCC--CCceeeE-----E---e--eeeeeeeC--CCCeeEe
Q 045338 75 QHSKYFCEF--CGKYAVK-----R---K--AVGIWGCK--DCGKVKA 107 (134)
Q Consensus 75 qhakY~Cpf--CGk~~VK-----R---~--avGIW~Ck--kCgkt~A 107 (134)
...+|.|+. ||+.-.. + . ..-.+.|. .|++.|.
T Consensus 14 ~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~f~ 60 (72)
T 2epa_A 14 RIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFA 60 (72)
T ss_dssp CCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECCCTTCCCEES
T ss_pred ccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCCCCCCCcccC
Confidence 345677877 8775311 1 1 22347784 5887764
No 258
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=37.44 E-value=13 Score=26.87 Aligned_cols=10 Identities=40% Similarity=1.095 Sum_probs=6.3
Q ss_pred ccccCCCCce
Q 045338 78 KYFCEFCGKY 87 (134)
Q Consensus 78 kY~CpfCGk~ 87 (134)
.|.|+-||+.
T Consensus 132 ~y~C~~Cg~~ 141 (165)
T 2lcq_A 132 RYVCIGCGRK 141 (165)
T ss_dssp CEEESSSCCE
T ss_pred EEECCCCCCc
Confidence 4667777654
No 259
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=37.05 E-value=14 Score=28.11 Aligned_cols=28 Identities=32% Similarity=0.714 Sum_probs=20.2
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCeeEeccc
Q 045338 79 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 79 Y~CpfCGk~~--VKR~avGIW~CkkCgkt~AGGA 110 (134)
-.|+.|++.- ..|. -||+.||..|-+.-
T Consensus 162 ~~C~~C~~~F~~~~rr----hhCr~CG~v~C~~C 191 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRK----HHCRNCGQVFCGQC 191 (220)
T ss_dssp SBCTTTCCBCCSSSCC----EECTTTCCEECSTT
T ss_pred CccCCCCCccCCcccc----cccCCcCCEEChHH
Confidence 3799998752 3333 49999999988754
No 260
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=36.92 E-value=19 Score=28.71 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=17.7
Q ss_pred ccCCCCceeeEEe--eeeeeeeCCCC
Q 045338 80 FCEFCGKYAVKRK--AVGIWGCKDCG 103 (134)
Q Consensus 80 ~CpfCGk~~VKR~--avGIW~CkkCg 103 (134)
.||.||.+..+-. +-+.|.|..|-
T Consensus 247 pC~~CG~~I~~~~~~gR~t~~CP~CQ 272 (273)
T 3u6p_A 247 PCKRCGTPIEKTVVAGRGTHYCPRCQ 272 (273)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCeEEEEEECCCCeEECCCCC
Confidence 7999998754322 35689999994
No 261
>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.81 E-value=10 Score=21.36 Aligned_cols=13 Identities=15% Similarity=0.217 Sum_probs=9.3
Q ss_pred hcccccCC--CCcee
Q 045338 76 HSKYFCEF--CGKYA 88 (134)
Q Consensus 76 hakY~Cpf--CGk~~ 88 (134)
..+|.|++ ||+.-
T Consensus 7 ekp~~C~~~~C~k~F 21 (38)
T 2eln_A 7 GILLKCPTDGCDYST 21 (38)
T ss_dssp CCCEECSSSSCCCEE
T ss_pred CCCCCCCCCCCCCcc
Confidence 45788876 88753
No 262
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=36.80 E-value=15 Score=28.09 Aligned_cols=15 Identities=27% Similarity=0.552 Sum_probs=13.3
Q ss_pred eeeeeeCCCCeeEec
Q 045338 94 VGIWGCKDCGKVKAG 108 (134)
Q Consensus 94 vGIW~CkkCgkt~AG 108 (134)
..+|.|..||++.-|
T Consensus 169 ~~~~~C~~CG~i~~g 183 (202)
T 1yuz_A 169 DKFHLCPICGYIHKG 183 (202)
T ss_dssp CCEEECSSSCCEEES
T ss_pred CcEEEECCCCCEEcC
Confidence 458999999999987
No 263
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=35.57 E-value=9.6 Score=24.74 Aligned_cols=20 Identities=25% Similarity=0.639 Sum_probs=13.0
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCC
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCG 103 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCg 103 (134)
-.||.||.....=. -|..||
T Consensus 31 ~~c~~cGe~~~~H~-----vc~~CG 50 (60)
T 3v2d_5 31 VPCPECKAMKPPHT-----VCPECG 50 (60)
T ss_dssp EECTTTCCEECTTS-----CCTTTC
T ss_pred eECCCCCCeecceE-----EcCCCC
Confidence 36899988664421 277777
No 264
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.48 E-value=23 Score=21.43 Aligned_cols=34 Identities=18% Similarity=0.420 Sum_probs=24.3
Q ss_pred ccCCCCceee-----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V-----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... -+..--.|| |..|++.+.++.|..
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCFICHRCQQPIGTKSFIP 50 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTTCCSSSCCCCCSSSEEE
T ss_pred CCccCCCcccCCceEEEECcCeecccCCcccccCCccCCCccCc
Confidence 6999998654 222334776 889999999887754
No 265
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=35.44 E-value=34 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.538 Sum_probs=23.6
Q ss_pred ccCCCCceeeEEe-----------eeeeeeeCCCCeeE----ecccccc
Q 045338 80 FCEFCGKYAVKRK-----------AVGIWGCKDCGKVK----AGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~VKR~-----------avGIW~CkkCgkt~----AGGAy~p 113 (134)
.||.||+..+.|. =.=-|.|.+||+.. .||+..|
T Consensus 14 ~Cp~C~~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~~~p 62 (404)
T 2qkd_A 14 LCMNCYRNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGRIQD 62 (404)
T ss_dssp ECTTTSSEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEESSCS
T ss_pred cCCCCCCCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcccCC
Confidence 6999998765554 22348999999654 4666555
No 266
>4adn_A FAR1; antibiotic resistance; 1.65A {Staphylococcus aureus} PDB: 4ado_A
Probab=35.40 E-value=21 Score=28.67 Aligned_cols=44 Identities=27% Similarity=0.499 Sum_probs=30.9
Q ss_pred ceeeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccccc
Q 045338 47 TKKAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYT 112 (134)
Q Consensus 47 TKKVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~ 112 (134)
.+-|||.+|+-+ ...+--|++|... ..|+.+.++.=| -|||.|+
T Consensus 148 ~~lvGi~lr~~~----------------~~~k~~CslC~~~----~~VsLf~a~~ag--~a~~~y~ 191 (222)
T 4adn_A 148 KQLKGLYGEISN----------------QVVKGFCTICNKE----SNVSLFMKKSKT--NSDGQYV 191 (222)
T ss_dssp CCEEEEEEEECS----------------CCEEEECTTTCSE----EEEEEEEEECCC--CTTSCCC
T ss_pred CeEEEEEEecCC----------------CCcCCccccCCCC----CcEEEEEEecCC--CCCCCcc
Confidence 467899999876 1136689999995 489999886333 3566653
No 267
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=34.89 E-value=19 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.333 Sum_probs=29.4
Q ss_pred hhHhHHHHHHhhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 045338 64 LRKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 103 (134)
Q Consensus 64 lRK~vkkIE~sqhakY~CpfCGk~~VKR~a--vGIW~CkkCg 103 (134)
.|+.+-+.-.+....-.|-.||.......+ .||.-|-.|.
T Consensus 22 ~~~~l~~~l~~~p~N~~CaDCga~~P~WaS~n~GvfiC~~Cs 63 (138)
T 2owa_A 22 LRDNFFQIVRNRPENRTCFDCESRNPTWLSLSFAVFICLNCS 63 (138)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHHHHcCcCCCcCCCCcCCCCCeEEecCCEEEhHhhh
Confidence 455555544556677789999998877665 4999999884
No 268
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=34.85 E-value=22 Score=28.10 Aligned_cols=24 Identities=29% Similarity=0.640 Sum_probs=17.7
Q ss_pred ccCCCCceeeEEe--eeeeeeeCCCC
Q 045338 80 FCEFCGKYAVKRK--AVGIWGCKDCG 103 (134)
Q Consensus 80 ~CpfCGk~~VKR~--avGIW~CkkCg 103 (134)
.||.||.+..+-. +-+.|.|..|-
T Consensus 236 pC~~CG~~I~~~~~~gR~t~~CP~CQ 261 (262)
T 1k3x_A 236 PCERCGSIIEKTTLSSRPFYWCPGCQ 261 (262)
T ss_dssp BCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCEeEEEEECCCCeEECCCCC
Confidence 6999998754322 45789999994
No 269
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=34.71 E-value=25 Score=27.11 Aligned_cols=45 Identities=20% Similarity=0.414 Sum_probs=27.5
Q ss_pred CchhhHhHHHHHHhhhccc-ccCCCCcee--eEEe-eeeee--eeCCCCee
Q 045338 61 GASLRKQIKKMEVSQHSKY-FCEFCGKYA--VKRK-AVGIW--GCKDCGKV 105 (134)
Q Consensus 61 GaslRK~vkkIE~sqhakY-~CpfCGk~~--VKR~-avGIW--~CkkCgkt 105 (134)
|+---+.+.++...=-.+| .||.|+.+. +.+. ..++| +|..||..
T Consensus 78 G~~~~~~i~~~L~~yI~~YVlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~ 128 (170)
T 2g2k_A 78 GSHEANKLQDMLDGFIKKFVLCPECENPETDLHVNPKKQTIGNSCKACGYR 128 (170)
T ss_dssp BCCCHHHHHHHHHHHHHHHHSCTTTSSSCEEEEEETTTTEEEEEETTTCCC
T ss_pred eeeCHHHHHHHHHHHHHHeEECCCCCCCccEEEEecCCCEEEEEccccCCc
Confidence 3334455666555555666 699999864 5442 22333 69999754
No 270
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=34.64 E-value=22 Score=28.23 Aligned_cols=25 Identities=28% Similarity=0.650 Sum_probs=18.2
Q ss_pred cccCCCCceeeEEe--eeeeeeeCCCC
Q 045338 79 YFCEFCGKYAVKRK--AVGIWGCKDCG 103 (134)
Q Consensus 79 Y~CpfCGk~~VKR~--avGIW~CkkCg 103 (134)
-.||.||.+..+-. +-+.|.|..|-
T Consensus 241 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ 267 (268)
T 1k82_A 241 EPCRVCGTPIVATKHAQRATFYCRQCQ 267 (268)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCC
Confidence 46999998754322 45789999994
No 271
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}
Probab=34.62 E-value=14 Score=22.70 Aligned_cols=12 Identities=17% Similarity=0.686 Sum_probs=9.3
Q ss_pred hcccccCCCCce
Q 045338 76 HSKYFCEFCGKY 87 (134)
Q Consensus 76 hakY~CpfCGk~ 87 (134)
..+|.|+.||+.
T Consensus 73 ~~~~~C~~C~~~ 84 (100)
T 2ebt_A 73 AKPFQCGVCNRS 84 (100)
T ss_dssp CCSCBCSSSCCB
T ss_pred CCCeECCCCcCc
Confidence 457899999875
No 272
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=34.56 E-value=22 Score=28.20 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=18.9
Q ss_pred cccCCCCceeeEEe--eeeeeeeCCCCe
Q 045338 79 YFCEFCGKYAVKRK--AVGIWGCKDCGK 104 (134)
Q Consensus 79 Y~CpfCGk~~VKR~--avGIW~CkkCgk 104 (134)
-.||.||.+..+-. +-+.|.|..|-+
T Consensus 243 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 243 EKCSRCGAEIQKIKVAGRGTHFCPVCQQ 270 (271)
T ss_dssp SBCTTTCCBCEEEEETTEEEEECTTTSC
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 46999998754322 457899999954
No 273
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.55 E-value=21 Score=22.10 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=24.5
Q ss_pred ccCCCCceee---EEeeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V---KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... -+.....|| |..|++.+.++.|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECFVCGDCFTSFSTGSFFE 58 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTCBCSSSCCBSCSSCCEE
T ss_pred ccccCCCeecceeEEECCCeEecCcCChhhCCCCCCCCcEEe
Confidence 6999998642 223345786 899999999887654
No 274
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.54 E-value=12 Score=22.79 Aligned_cols=35 Identities=17% Similarity=0.475 Sum_probs=24.5
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~V-----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++... -+..--.|| |..|++.+.++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1wyh_A 6 SGCSACGETVMPGSRKLEYGGQTWHEHCFLCSGCEQPLGSRSFVP 50 (72)
T ss_dssp CBCSSSCCBCCSSSCEECSTTCCEETTTCBCTTTCCBTTTSCEEE
T ss_pred CCCccCCCccccCccEEEECccccCcccCeECCCCCcCCCCccCC
Confidence 47999998653 112234776 889999999887654
No 275
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.04 E-value=21 Score=22.24 Aligned_cols=34 Identities=26% Similarity=0.587 Sum_probs=24.8
Q ss_pred ccCCCCceee--EE---eeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV--KR---KAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V--KR---~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... .+ ..-..|| |..|++.+.++.|..
T Consensus 17 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 60 (82)
T 1x63_A 17 KCKGCFKAIVAGDQNVEYKGTVWHKDCFTCSNCKQVIGTGSFFP 60 (82)
T ss_dssp BCSSSCCBCCSSSCEEECSSCEEETTTCCCSSSCCCCTTSCEEE
T ss_pred cCccCCcccccCceEEEECccccccccCchhhCCCccCCCccEe
Confidence 6999998754 22 2345786 889999998887654
No 276
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.93 E-value=17 Score=22.40 Aligned_cols=36 Identities=17% Similarity=0.287 Sum_probs=25.4
Q ss_pred ccccCCCCceee-----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 78 KYFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 78 kY~CpfCGk~~V-----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.-.|+.|++... -+.....|| |..|++.+.++.|..
T Consensus 11 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 56 (77)
T 1g47_A 11 SATCERCKGGFAPAEKIVNSNGELYHEQCFVCAQCFQQFPEGLFYE 56 (77)
T ss_dssp CCBCSSSCCBCCSTTTCEEETTEEECTTTCCCTTTCCCCGGGCSEE
T ss_pred CCCchhcCCccCCCceEEEeCccEeccccCeECCCCCCCCCCCeEe
Confidence 347999998652 223334775 889999999987654
No 277
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.86 E-value=25 Score=21.18 Aligned_cols=35 Identities=26% Similarity=0.458 Sum_probs=24.9
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
..|+.|++.... +..--.|| |..|++.+.++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (70)
T 2d8z_A 6 SGCVQCKKPITTGGVTYREQPWHKECFVCTACRKQLSGQRFTA 48 (70)
T ss_dssp CBCSSSCCBCCSSEEESSSSEEETTTSBCSSSCCBCTTSCCEE
T ss_pred CCCcccCCeeccceEEECccccCCCCCccCCCCCcCCcCceEe
Confidence 369999986532 12335786 889999998887754
No 278
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=33.27 E-value=24 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.581 Sum_probs=19.0
Q ss_pred cccCCCCceeeEEe--eeeeeeeCCCCe
Q 045338 79 YFCEFCGKYAVKRK--AVGIWGCKDCGK 104 (134)
Q Consensus 79 Y~CpfCGk~~VKR~--avGIW~CkkCgk 104 (134)
-.||.||.+..+-. +-+.|.|..|-+
T Consensus 236 ~pC~~CG~~I~~~~~~gR~t~~CP~CQ~ 263 (266)
T 1ee8_A 236 LPCPACGRPVERRVVAGRGTHFCPTCQG 263 (266)
T ss_dssp SBCTTTCCBCEEEESSSCEEEECTTTTT
T ss_pred CCCCCCCCEeeEEEECCCceEECCCCCC
Confidence 46999998754322 447899999964
No 279
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=32.73 E-value=14 Score=18.83 Aligned_cols=11 Identities=27% Similarity=1.014 Sum_probs=6.2
Q ss_pred cccccCC--CCce
Q 045338 77 SKYFCEF--CGKY 87 (134)
Q Consensus 77 akY~Cpf--CGk~ 87 (134)
.+|.|++ ||+.
T Consensus 5 k~~~C~~~~C~k~ 17 (38)
T 1bhi_A 5 KPFLCTAPGCGQR 17 (38)
T ss_dssp CCEECCCTTTCCE
T ss_pred cceECCCCCCCcc
Confidence 4566663 6654
No 280
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=32.59 E-value=16 Score=23.25 Aligned_cols=11 Identities=27% Similarity=0.803 Sum_probs=7.8
Q ss_pred cccccCCCCce
Q 045338 77 SKYFCEFCGKY 87 (134)
Q Consensus 77 akY~CpfCGk~ 87 (134)
.+|.|+.||+.
T Consensus 79 ~~~~C~~C~k~ 89 (115)
T 2dmi_A 79 KVLKCMYCGHS 89 (115)
T ss_dssp SSCBCSSSCCB
T ss_pred cceECCCCCCc
Confidence 56778877764
No 281
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=32.47 E-value=12 Score=24.18 Aligned_cols=19 Identities=26% Similarity=0.716 Sum_probs=12.8
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCC
Q 045338 80 FCEFCGKYAVKRKAVGIWGCKDCG 103 (134)
Q Consensus 80 ~CpfCGk~~VKR~avGIW~CkkCg 103 (134)
.||.||...+-.. -|..||
T Consensus 32 ~c~~cG~~~~pH~-----vc~~CG 50 (60)
T 2zjr_Z 32 ECPQCHGKKLSHH-----ICPNCG 50 (60)
T ss_dssp ECTTTCCEECTTB-----CCTTTC
T ss_pred ECCCCCCEeCCce-----EcCCCC
Confidence 6999998864422 366776
No 282
>3alr_A Nanos protein; zinc-finger, translational repression, RNA, 3'-UTR, metal BI protein; 2.10A {Danio rerio}
Probab=31.93 E-value=14 Score=26.96 Aligned_cols=11 Identities=36% Similarity=1.068 Sum_probs=9.4
Q ss_pred ccccCCCCcee
Q 045338 78 KYFCEFCGKYA 88 (134)
Q Consensus 78 kY~CpfCGk~~ 88 (134)
.|+||.||.+-
T Consensus 71 ~Y~CpiCGATG 81 (106)
T 3alr_A 71 QYKCPLCGATG 81 (106)
T ss_dssp GCCCTTTCCCG
T ss_pred cccCCCCCCcC
Confidence 59999999874
No 283
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=31.66 E-value=12 Score=25.68 Aligned_cols=51 Identities=25% Similarity=0.411 Sum_probs=32.3
Q ss_pred eccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccc
Q 045338 52 IVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 52 i~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGA 110 (134)
+.|--|+|-|.+.-.- ++..+..+..|..|++..-- . -.+| .|+.+|-+--
T Consensus 2 ~~~~~~~~~~~~~~~~---~~~~k~~~~RC~~C~kkvgL-~---~f~C-rCg~~FCs~H 52 (74)
T 1wfp_A 2 SSGSSGTRGGDSAAAP---LDPPKSTATRCLSCNKKVGV-T---GFKC-RCGSTFCGTH 52 (74)
T ss_dssp CCCCCCCCSSCCCCCC---SCCTTCCCCBCSSSCCBCTT-T---CEEC-TTSCEECTTT
T ss_pred CCCCCCCCCCcccccc---cccCcccCccchhhcCcccc-c---ceEe-ccCCEecccc
Confidence 4555667777554333 34456677889999875210 1 2799 7999997643
No 284
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.42 E-value=33 Score=21.14 Aligned_cols=35 Identities=23% Similarity=0.412 Sum_probs=24.7
Q ss_pred cccCCCCceee----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~V----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++... -...--.|| |..|++.+.++.|..
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 53 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCLKCERCSKTLTPGGHAE 53 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTCBCSSSCCBCCTTSCEE
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCCCCCCCCCccCCCceEe
Confidence 46999998653 112234787 899999999887654
No 285
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.12 E-value=23 Score=21.37 Aligned_cols=35 Identities=29% Similarity=0.457 Sum_probs=24.2
Q ss_pred cccCCCCceee---EEeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~V---KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++... -+..--.|| |..|++.+.|..|..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 48 (69)
T 2cur_A 6 SGCVKCNKAITSGGITYQDQPWHADCFVCVTCSKKLAGQRFTA 48 (69)
T ss_dssp CCCSSSCCCCCTTCEEETTEEECTTTTBCTTTCCBCTTSCEEE
T ss_pred CCCcccCCEeCcceEEECccccccCcCEECCCCCCCCCCccEe
Confidence 36999998642 222335786 889999998877654
No 286
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=30.97 E-value=32 Score=21.19 Aligned_cols=34 Identities=26% Similarity=0.522 Sum_probs=23.1
Q ss_pred ccCCCCceee----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... -....-.|| |..|++.+.++.|..
T Consensus 2 ~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 44 (76)
T 1iml_A 2 KCPKCDKEVYFAERVTSLGKDWHRPCLKCEKCGKTLTSGGHAE 44 (76)
T ss_dssp BCTTTSSBCCGGGEEEETTEEEETTTCBCTTTCCBCCTTTEEE
T ss_pred cCCCCCCEEECceEEEECCccccCCCCCccccCccCCCCceEC
Confidence 4888888642 112234786 889999999887653
No 287
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=30.71 E-value=21 Score=25.47 Aligned_cols=27 Identities=30% Similarity=0.705 Sum_probs=19.5
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCeeEeccc
Q 045338 80 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 80 ~CpfCGk~~--VKR~avGIW~CkkCgkt~AGGA 110 (134)
.|+.|++.- .+|. -||+.||..|-+.-
T Consensus 71 ~C~~C~~~Fs~~~Rr----HHCR~CG~vfC~~C 99 (125)
T 1joc_A 71 NCMACGKGFSVTVRR----HHCRQCGNIFCAEC 99 (125)
T ss_dssp BCTTTCCBCCSSSCC----EECTTTCCEECGGG
T ss_pred CCcCcCCcccccccc----ccCCCCCeEEChHH
Confidence 699999852 2222 39999999987754
No 288
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.51 E-value=35 Score=21.89 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=25.7
Q ss_pred ccccCCCCceee--E--Eeeeeeee-----eCCCCeeEecccccc
Q 045338 78 KYFCEFCGKYAV--K--RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 78 kY~CpfCGk~~V--K--R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.-.|+.|++... . +..-..|| |..|++.+.++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 59 (91)
T 2d8y_A 15 RETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYAS 59 (91)
T ss_dssp SCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTCCBCCTTTCCC
T ss_pred CCcCccCCCccCCceeEEECCCEECCCCCeeCCCCCCCCCCCcEe
Confidence 347999998652 2 23335887 889999999987654
No 289
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=30.46 E-value=39 Score=26.18 Aligned_cols=42 Identities=21% Similarity=0.348 Sum_probs=22.4
Q ss_pred eeeeecc-CCccccC--chhhH-hHHHHHHhhhcccccCCCCceeeE
Q 045338 48 KKAGIVG-KYGTRYG--ASLRK-QIKKMEVSQHSKYFCEFCGKYAVK 90 (134)
Q Consensus 48 KKVgi~G-kfGtRYG--aslRK-~vkkIE~sqhakY~CpfCGk~~VK 90 (134)
+-+|++. .=|+..| ..|-. .+..|- ....-..||.||+--+.
T Consensus 189 ~g~avv~v~~~~C~GC~~~lppq~~~~i~-~~~~Iv~Cp~CgRIL~~ 234 (256)
T 3na7_A 189 KNTSIVTIKKQACGGCFIRLNDKIYTEVL-TSGDMITCPYCGRILYA 234 (256)
T ss_dssp GGGSEEECBTTBCTTTCCBCCHHHHHHHH-HSSSCEECTTTCCEEEC
T ss_pred CCceEEEeeCCccCCCCeeeCHHHHHHHH-CCCCEEECCCCCeeEEe
Confidence 3455554 3356666 33332 233332 23345789999987764
No 290
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=30.37 E-value=25 Score=28.85 Aligned_cols=26 Identities=23% Similarity=0.409 Sum_probs=18.6
Q ss_pred ccCCCCceeeE-Eee---eeeeeeCCCCee
Q 045338 80 FCEFCGKYAVK-RKA---VGIWGCKDCGKV 105 (134)
Q Consensus 80 ~CpfCGk~~VK-R~a---vGIW~CkkCgkt 105 (134)
.||.||.+..+ +.+ -..|.|..|-+.
T Consensus 253 pC~~CGt~I~~~~~g~~gRsTyfCp~~~~~ 282 (287)
T 3w0f_A 253 NCDQCHSKITVCRFGENSRMTYFCPHCQKH 282 (287)
T ss_dssp BCTTTCCBCEEECSSTTCCCEEECTTTSCC
T ss_pred CCCCCCCEEEEEEecCCCCCEEECCCcccc
Confidence 79999976433 222 458999999763
No 291
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.25 E-value=26 Score=21.87 Aligned_cols=35 Identities=20% Similarity=0.401 Sum_probs=25.0
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++.... +...-.|| |..|++.+.|..|..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 58 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGCFTCVVCHRGLDGIPFTV 58 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTCBCSSSCCBCTTSCEEC
T ss_pred CccccCCCeecceeEEECCccccHHhcCcccCCCccCCCeeEE
Confidence 369999986532 22335787 899999998887765
No 292
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
Probab=30.02 E-value=16 Score=23.75 Aligned_cols=13 Identities=31% Similarity=0.761 Sum_probs=10.5
Q ss_pred hcccccCCCCcee
Q 045338 76 HSKYFCEFCGKYA 88 (134)
Q Consensus 76 hakY~CpfCGk~~ 88 (134)
..+|.|+.||+.-
T Consensus 23 ~kpy~C~~C~k~F 35 (88)
T 1x6f_A 23 NSTYQCKHCDSKL 35 (88)
T ss_dssp CSCEECSSSCCEE
T ss_pred CCCCcCCCCCCEe
Confidence 4579999999874
No 293
>4dvc_A Thiol:disulfide interchange protein DSBA; pilus assembly, oxidoreductase, thioredoxin fold, D disulfide bond, DSBB; HET: DMS; 1.20A {Vibrio cholerae} PDB: 2ijy_A 1bed_A
Probab=29.88 E-value=7.7 Score=26.52 Aligned_cols=15 Identities=27% Similarity=0.793 Sum_probs=11.0
Q ss_pred HHhhhcccccCCCCc
Q 045338 72 EVSQHSKYFCEFCGK 86 (134)
Q Consensus 72 E~sqhakY~CpfCGk 86 (134)
++.--..|.||+|.+
T Consensus 24 ~vvEf~dy~Cp~C~~ 38 (184)
T 4dvc_A 24 VVSEFFSFYCPHCNT 38 (184)
T ss_dssp EEEEEECTTCHHHHH
T ss_pred EEEEEECCCCHhHHH
Confidence 344566899999975
No 294
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=29.85 E-value=14 Score=22.16 Aligned_cols=11 Identities=27% Similarity=0.836 Sum_probs=5.5
Q ss_pred eeeCCCCeeEe
Q 045338 97 WGCKDCGKVKA 107 (134)
Q Consensus 97 W~CkkCgkt~A 107 (134)
+.|..||+.|.
T Consensus 10 ~~C~~C~~~i~ 20 (39)
T 2i5o_A 10 VPCEKCGSLVP 20 (39)
T ss_dssp EECTTTCCEEE
T ss_pred cccccccCcCC
Confidence 44555555444
No 295
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=29.57 E-value=15 Score=24.51 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=20.4
Q ss_pred hhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccc
Q 045338 75 QHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGA 110 (134)
+..+-.|..|++.. ..=-.+| .||.+|-+--
T Consensus 12 ~~~~~rC~~C~kkv----gl~~f~C-rCg~~FC~~H 42 (64)
T 1wg2_A 12 VRPNNRCFSCNKKV----GVMGFKC-KCGSTFCGSH 42 (64)
T ss_dssp SCCSCSCTTTCCCC----TTSCEEC-TTSCEECSSS
T ss_pred CCcCCcChhhCCcc----cccCeEe-ecCCEecccC
Confidence 34456899998751 1102799 7999997643
No 296
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=29.01 E-value=39 Score=25.41 Aligned_cols=18 Identities=28% Similarity=0.687 Sum_probs=13.9
Q ss_pred eeeeeeeeCCCCeeEecc
Q 045338 92 KAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 92 ~avGIW~CkkCgkt~AGG 109 (134)
..-.|+||..||---.||
T Consensus 94 ~~k~~yHC~~CgiCR~G~ 111 (143)
T 2dkt_A 94 KDKRQYHCESCGICRIGP 111 (143)
T ss_dssp CSSSEEEETTTTEEEESC
T ss_pred CCCceecCCCCCceeccC
Confidence 356788999998877776
No 297
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=28.71 E-value=26 Score=23.02 Aligned_cols=27 Identities=30% Similarity=0.720 Sum_probs=18.9
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCeeEecc
Q 045338 79 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 79 Y~CpfCGk~~--VKR~avGIW~CkkCgkt~AGG 109 (134)
-.|..|++.- .+|. -||+.||..|-+.
T Consensus 20 ~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~ 48 (82)
T 2yw8_A 20 THCRQCEKEFSISRRK----HHCRNCGHIFCNT 48 (82)
T ss_dssp CBCTTTCCBCBTTBCC----EECTTTCCEECSG
T ss_pred CcccCcCCcccCcccc----ccCCCCCCEEChH
Confidence 3699998752 3333 3899999888765
No 298
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=28.70 E-value=26 Score=25.87 Aligned_cols=30 Identities=20% Similarity=0.391 Sum_probs=22.8
Q ss_pred hhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 045338 74 SQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 103 (134)
Q Consensus 74 sqhakY~CpfCGk~~VKR~a--vGIW~CkkCg 103 (134)
+....-.|--||.......+ .||.-|-.|.
T Consensus 21 ~~p~N~~CaDCg~~~P~WaS~n~GvfiC~~Cs 52 (140)
T 2olm_A 21 GLPHNRKCFDCDQRGPTYVNMTVGSFVCTSCS 52 (140)
T ss_dssp TSGGGGSCTTTCSSCCCEEETTTTEEECHHHH
T ss_pred cCcCCCcCCCCCCCCCCceeeccCEEEchhcc
Confidence 34456789999998877665 4999998773
No 299
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=28.58 E-value=26 Score=22.48 Aligned_cols=27 Identities=33% Similarity=0.703 Sum_probs=18.3
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCeeEeccc
Q 045338 80 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 80 ~CpfCGk~~--VKR~avGIW~CkkCgkt~AGGA 110 (134)
.|..|++.- .+|. -||+.||+.|-+.-
T Consensus 13 ~C~~C~~~F~~~~Rr----HHCR~CG~v~C~~C 41 (73)
T 1vfy_A 13 ACMICSKKFSLLNRK----HHCRSCGGVFCQEH 41 (73)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEECGGG
T ss_pred cccCCCCccCCcccc----ccCCCCCEEEcccc
Confidence 688888752 3333 48888888886653
No 300
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=28.39 E-value=36 Score=22.88 Aligned_cols=28 Identities=25% Similarity=0.445 Sum_probs=20.9
Q ss_pred ccCCCCcee-eEEeeeeeeeeCCCCeeEe
Q 045338 80 FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 80 ~CpfCGk~~-VKR~avGIW~CkkCgkt~A 107 (134)
.||-|++.. |==.|.-.=.|..|+.+.+
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~ 37 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVA 37 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEE
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEe
Confidence 699999976 3333555569999999884
No 301
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=28.17 E-value=51 Score=25.74 Aligned_cols=29 Identities=21% Similarity=0.350 Sum_probs=17.8
Q ss_pred ccccCCCCceee----E----E-eeeeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAV----K----R-KAVGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~V----K----R-~avGIW~CkkCgkt~ 106 (134)
...||.||.... - . .......|.+|+..+
T Consensus 22 ~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~ 59 (206)
T 3flo_B 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLF 59 (206)
T ss_dssp EEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBC
T ss_pred EEECCCCCCccCCCCcccCCCcccccccccCCCCCCcC
Confidence 457999986431 1 1 112245899999865
No 302
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=28.09 E-value=22 Score=22.75 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=25.0
Q ss_pred ccccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 78 KYFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 78 kY~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.-.|+.|++...- +..-..|| |..|++.+.++.|..
T Consensus 25 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 68 (89)
T 1x64_A 25 MPLCDKCGSGIVGAVVKARDKYRHPECFVCADCNLNLKQKGYFF 68 (89)
T ss_dssp CCBCTTTCCBCCSCCEESSSCEECTTTCCCSSSCCCTTTSCCEE
T ss_pred CCCcccCCCEecccEEEECCceECccCCEecCCCCCCCCCCeEe
Confidence 4579999987522 22335786 889999998876653
No 303
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.04 E-value=33 Score=20.73 Aligned_cols=35 Identities=23% Similarity=0.582 Sum_probs=24.5
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++...- +..--.|| |..|+..+.++.|..
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 48 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECFRCDLCQEVLADIGFVK 48 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTSBCSSSCCBCSSSCCEE
T ss_pred CcCccCCCEecceEEEECcccccccCCEeCCCCCcCCCCccEe
Confidence 469999986432 22224676 889999999987764
No 304
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.91 E-value=24 Score=19.91 Aligned_cols=12 Identities=25% Similarity=0.648 Sum_probs=9.7
Q ss_pred eeeeeeCCCCee
Q 045338 94 VGIWGCKDCGKV 105 (134)
Q Consensus 94 vGIW~CkkCgkt 105 (134)
.|=|.|.+|+..
T Consensus 3 ~gDW~C~~C~~~ 14 (32)
T 2lk0_A 3 FEDWLCNKCCLN 14 (32)
T ss_dssp CSEEECTTTCCE
T ss_pred CCCCCcCcCcCC
Confidence 377999999864
No 305
>3gn3_A Putative protein-disulfide isomerase; MCSG, PSI, structural GEN protein structure initiative, midwest center for structural genomics; 2.50A {Pseudomonas syringae PV}
Probab=27.88 E-value=6.7 Score=28.77 Aligned_cols=14 Identities=21% Similarity=0.197 Sum_probs=10.6
Q ss_pred hhhcccccCCCCce
Q 045338 74 SQHSKYFCEFCGKY 87 (134)
Q Consensus 74 sqhakY~CpfCGk~ 87 (134)
.....|.||+|.+-
T Consensus 19 v~f~D~~Cp~C~~~ 32 (182)
T 3gn3_A 19 EVFLEPTCPFSVKA 32 (182)
T ss_dssp EEEECTTCHHHHHH
T ss_pred EEEECCCCHhHHHH
Confidence 34567999999873
No 306
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=27.85 E-value=26 Score=21.64 Aligned_cols=12 Identities=25% Similarity=0.551 Sum_probs=10.5
Q ss_pred eeeeCCCCeeEe
Q 045338 96 IWGCKDCGKVKA 107 (134)
Q Consensus 96 IW~CkkCgkt~A 107 (134)
+|.|..||++.-
T Consensus 4 ~y~C~vCGyvyd 15 (46)
T 6rxn_A 4 KYVCNVCGYEYD 15 (46)
T ss_dssp CEEETTTCCEEC
T ss_pred EEECCCCCeEEe
Confidence 699999998886
No 307
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=27.66 E-value=29 Score=25.81 Aligned_cols=24 Identities=33% Similarity=0.911 Sum_probs=17.6
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCCee
Q 045338 80 FCEFCGKYAVKRKAVGIWGCKDCGKV 105 (134)
Q Consensus 80 ~CpfCGk~~VKR~avGIW~CkkCgkt 105 (134)
.|+.||..-+. .+ ..=+|..||.+
T Consensus 142 ~~~~~g~~m~~-~~-~~~~cp~~g~~ 165 (179)
T 3m7n_A 142 LCSNCKTEMVR-EG-DILKCPECGRV 165 (179)
T ss_dssp BCTTTCCBCEE-CS-SSEECSSSCCE
T ss_pred cccccCCceEE-CC-CEEECCCCCCE
Confidence 58888877655 44 67789888854
No 308
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.64 E-value=28 Score=22.90 Aligned_cols=27 Identities=22% Similarity=0.555 Sum_probs=17.8
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCeeEecc
Q 045338 79 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 79 Y~CpfCGk~~--VKR~avGIW~CkkCgkt~AGG 109 (134)
-.|..|++.- .+|.- ||+.||..|-+.
T Consensus 15 ~~C~~C~~~F~~~~RrH----HCR~CG~vfC~~ 43 (84)
T 1x4u_A 15 GNCTGCSATFSVLKKRR----SCSNCGNSFCSR 43 (84)
T ss_dssp SSCSSSCCCCCSSSCCE----ECSSSCCEECTT
T ss_pred CcCcCcCCccccchhhh----hhcCCCcEEChh
Confidence 3688888752 33332 788888877664
No 309
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Probab=27.61 E-value=19 Score=24.08 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=19.9
Q ss_pred hcccccCC--CCceeeEE--------e--eeeeeeeCC--CCeeEe
Q 045338 76 HSKYFCEF--CGKYAVKR--------K--AVGIWGCKD--CGKVKA 107 (134)
Q Consensus 76 hakY~Cpf--CGk~~VKR--------~--avGIW~Ckk--Cgkt~A 107 (134)
..+|.|+. ||+.-..+ . +..-+.|.- |++.|.
T Consensus 88 ~~~~~C~~~~C~~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~ 133 (155)
T 2rpc_A 88 EKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFA 133 (155)
T ss_dssp CCSEECSCTTTCCEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBS
T ss_pred CCcccCCcCCCCCccCCHHHHHHHHHhhCCCCCccCCCCCCCCccC
Confidence 35688887 88764221 1 234578875 887765
No 310
>1vq8_3 50S ribosomal protein L44E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.3 PDB: 1jj2_2 1k73_4* 1k8a_4* 1k9m_4* 1kc8_4* 1kd1_4* 1kqs_2* 1m1k_4* 1m90_4* 1n8r_4* 1nji_4* 1q7y_4* 1q81_4* 1q82_4* 1q86_4* 1qvf_2 1qvg_2 1s72_3* 1vq4_3* 1vq5_3* ...
Probab=27.49 E-value=16 Score=25.86 Aligned_cols=43 Identities=33% Similarity=0.525 Sum_probs=27.5
Q ss_pred eeeeccCCccccCchhhHhHHHHHHhhhcccccCCCCceeeEEeeeeeeeeCC
Q 045338 49 KAGIVGKYGTRYGASLRKQIKKMEVSQHSKYFCEFCGKYAVKRKAVGIWGCKD 101 (134)
Q Consensus 49 KVgi~GkfGtRYGaslRK~vkkIE~sqhakY~CpfCGk~~VKR~avGIW~Ckk 101 (134)
..|.-|.+-+-++. -|--++ ..-+|.|..||+..++ .||.|++
T Consensus 45 q~GygGq~kpv~~~--aK~TKK----i~Lrl~C~~C~~~~~~----~~~R~k~ 87 (92)
T 1vq8_3 45 GIGNDGKFSKVPGG--DKPTKK----TDLKYRCGECGKAHLR----EGWRAGR 87 (92)
T ss_dssp CSSCCGGGGCCCCC--CCSSCB----CCEEEEETTTCCEECC----CCCBCSC
T ss_pred ccccCCcCCcccCC--Ccccce----EEEEEEecccChhhcc----ccceeeE
Confidence 46666666655554 233332 3567999999988776 4788764
No 311
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli}
Probab=27.10 E-value=24 Score=32.17 Aligned_cols=24 Identities=17% Similarity=0.423 Sum_probs=18.6
Q ss_pred cccccCCCCceeeEEeeeeeeeeC
Q 045338 77 SKYFCEFCGKYAVKRKAVGIWGCK 100 (134)
Q Consensus 77 akY~CpfCGk~~VKR~avGIW~Ck 100 (134)
-+-.||.||...++-.+--.|.|.
T Consensus 404 ~P~~CP~Cgs~l~~~~~~~~~rC~ 427 (671)
T 2owo_A 404 FPTHCPVCGSDVERVEGEAVARCT 427 (671)
T ss_dssp CCSBCTTTCCBEEECTTCSCEEEC
T ss_pred CCCCCCCCCCEeEEecCCEEEECC
Confidence 456899999988864455688997
No 312
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.03 E-value=17 Score=25.63 Aligned_cols=43 Identities=23% Similarity=0.328 Sum_probs=22.1
Q ss_pred hHhHHHHHHhhhccc----ccCCCCcee-eEEeeeeeeeeCCCCeeEe
Q 045338 65 RKQIKKMEVSQHSKY----FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 65 RK~vkkIE~sqhakY----~CpfCGk~~-VKR~avGIW~CkkCgkt~A 107 (134)
||.-.|+.+..-..| .||-|++.. |=-.|.-.=.|..|+.+.+
T Consensus 19 ~khK~k~Lv~~PnS~Fm~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 19 LKHKKKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCPGCQTVLC 66 (86)
T ss_dssp --------------CEEEEECTTTCCEEEEETTCSSCCCCSSSCCCCS
T ss_pred hhhhheeeccCCCCcEeEEECCCCCCeeEEEecCCcEEEccCCCCEee
Confidence 444455555555444 799999875 4445666669999998764
No 313
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=26.93 E-value=18 Score=20.42 Aligned_cols=10 Identities=30% Similarity=0.770 Sum_probs=7.2
Q ss_pred cccccCCCCc
Q 045338 77 SKYFCEFCGK 86 (134)
Q Consensus 77 akY~CpfCGk 86 (134)
++|.||.|..
T Consensus 2 ~k~~CpvCk~ 11 (28)
T 2jvx_A 2 SDFCCPKCQY 11 (28)
T ss_dssp CCEECTTSSC
T ss_pred CcccCccccc
Confidence 4677888864
No 314
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=26.75 E-value=35 Score=20.89 Aligned_cols=34 Identities=21% Similarity=0.429 Sum_probs=23.6
Q ss_pred ccCCCCceee------E--Eeeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV------K--RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V------K--R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... . +..-..|| |..|++.+.|+.|.+
T Consensus 17 ~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 63 (77)
T 2egq_A 17 KCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNLANKRFVF 63 (77)
T ss_dssp CCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBCTTSCCCE
T ss_pred cCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCCCCCccEe
Confidence 5999998654 2 22334774 889999998887654
No 315
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.72 E-value=27 Score=26.88 Aligned_cols=28 Identities=29% Similarity=0.654 Sum_probs=20.0
Q ss_pred ccCCCCcee--eEEeeeeeeeeCCCCeeEecccc
Q 045338 80 FCEFCGKYA--VKRKAVGIWGCKDCGKVKAGGAY 111 (134)
Q Consensus 80 ~CpfCGk~~--VKR~avGIW~CkkCgkt~AGGAy 111 (134)
.|..|++.- ..|. -||+.||..|-+.-=
T Consensus 166 ~C~~C~~~F~~~~Rr----hHCR~CG~v~C~~Cs 195 (226)
T 3zyq_A 166 ECHRCRVQFGVMTRK----HHCRACGQIFCGKCS 195 (226)
T ss_dssp BCTTTCCBCBTTBCC----EECTTTCCEECTTTC
T ss_pred CCcCcCCCCCccccc----cccCCCcCEeChhhc
Confidence 799999752 3333 489999998877543
No 316
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.55 E-value=40 Score=21.54 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=24.7
Q ss_pred cccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++.... ...--.|| |..|++.+.++.|..
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~f~~ 68 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEFNCAHCKNTMAYIGFVE 68 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTCBCSSSCCBCSSSCBEE
T ss_pred CCCccCCCEecceEEEECCccccccCCccCCCCCCCCCCEeEe
Confidence 469999996521 12335674 999999999887754
No 317
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=26.53 E-value=69 Score=21.19 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=24.8
Q ss_pred hhHhhHhHhhhhhhccceeeeeccCCccccCchhhHhHHHHH
Q 045338 31 VRFLEFLVCFCKMTKRTKKAGIVGKYGTRYGASLRKQIKKME 72 (134)
Q Consensus 31 ~~~~~~~~~~~~MakrTKKVgi~GkfGtRYGaslRK~vkkIE 72 (134)
..|++.+.. + -+.|++.+.+-||..||..++...+.++
T Consensus 67 ~~fl~~l~~---~-l~~k~~~~f~t~g~~~~~a~~~l~~~l~ 104 (138)
T 5nul_A 67 EPFIEEIST---K-ISGKKVALFGSYGWGDGKWMRDFEERMN 104 (138)
T ss_dssp HHHHHHHGG---G-CTTCEEEEEEEESSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHh---h-cCCCEEEEEEecCCCCChHHHHHHHHHH
Confidence 345554432 2 3457899999999988877765555444
No 318
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=26.52 E-value=22 Score=19.56 Aligned_cols=9 Identities=44% Similarity=0.958 Sum_probs=7.5
Q ss_pred ccCCCCcee
Q 045338 80 FCEFCGKYA 88 (134)
Q Consensus 80 ~CpfCGk~~ 88 (134)
.||.|||+.
T Consensus 5 ~C~~C~k~V 13 (31)
T 1zfo_A 5 NCARCGKIV 13 (31)
T ss_dssp BCSSSCSBC
T ss_pred cCCccCCEE
Confidence 699999975
No 319
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=26.26 E-value=18 Score=24.07 Aligned_cols=22 Identities=23% Similarity=0.605 Sum_probs=15.4
Q ss_pred cccCCCCcee--------eEEeeeeeeeeC
Q 045338 79 YFCEFCGKYA--------VKRKAVGIWGCK 100 (134)
Q Consensus 79 Y~CpfCGk~~--------VKR~avGIW~Ck 100 (134)
.+|.|||.+. |+..+.-.|-|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 33 (66)
T 1vq8_U 4 RECDYCGTDIEPGTGTMFVHKDGATTHFCS 33 (66)
T ss_dssp CBCTTTCCBCCSSCCEEEECTTSCEEEESC
T ss_pred eEecCcCCcccCCCceEEEeeCCcEEEEEC
Confidence 6899999875 555566666664
No 320
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=26.25 E-value=32 Score=26.49 Aligned_cols=40 Identities=23% Similarity=0.415 Sum_probs=28.1
Q ss_pred hhHhHHHHHHhhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 045338 64 LRKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 103 (134)
Q Consensus 64 lRK~vkkIE~sqhakY~CpfCGk~~VKR~a--vGIW~CkkCg 103 (134)
..+.+.++-......-.|.-||.......+ .||+-|-.|.
T Consensus 8 a~~~l~~L~~~~p~N~~CaDCga~~P~WaS~nlGvflCi~CS 49 (163)
T 3sub_A 8 AVEFINRLKKEDESNNKCFDCGISNPDWVSVNHGIFLCINCS 49 (163)
T ss_dssp HHHHHHHHHHHSGGGGBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHHHhCCCCCCccccCCCCCCCeEEecCCeeEHHhhh
Confidence 344455554444456689999998877765 4999999883
No 321
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.60 E-value=38 Score=21.11 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=22.8
Q ss_pred ccCCCCceee---EEeeeeeee-----eCCCCeeEecccc
Q 045338 80 FCEFCGKYAV---KRKAVGIWG-----CKDCGKVKAGGAY 111 (134)
Q Consensus 80 ~CpfCGk~~V---KR~avGIW~-----CkkCgkt~AGGAy 111 (134)
.|+.|++... -+..-..|| |..|++.+..|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCFVCAVCRLPFPPGDR 56 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTSSCSSSCCCCCSSSC
T ss_pred cCccccCEeccceEEECCceeCccCCccccCCCCCCCCCE
Confidence 6999998642 223346787 8889998887664
No 322
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=25.30 E-value=36 Score=22.61 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=20.4
Q ss_pred hhcccccCCCCceeeEEeeeeeeeeCCCCeeEeccc
Q 045338 75 QHSKYFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGA 110 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR~avGIW~CkkCgkt~AGGA 110 (134)
+..+..|..|++..-- + -.+| .||.+|-+--
T Consensus 12 k~~~~rC~~C~kkvgl---~-~f~C-rCg~~FC~~H 42 (64)
T 1wfh_A 12 PQRPNRCTVCRKRVGL---T-GFMC-RCGTTFCGSH 42 (64)
T ss_dssp CSSCCCCTTTCCCCCT---T-CEEC-SSSCEECTTT
T ss_pred CCcCCcChhhCCccCc---c-CEEe-ecCCEecccc
Confidence 3456789999875210 1 2699 6999997643
No 323
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.94 E-value=48 Score=22.03 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred ccCCCCcee-eEEeeeeeeeeCCCCeeEe
Q 045338 80 FCEFCGKYA-VKRKAVGIWGCKDCGKVKA 107 (134)
Q Consensus 80 ~CpfCGk~~-VKR~avGIW~CkkCgkt~A 107 (134)
.||-|++.. |==.+.-.=.|..|+.+.+
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~ 45 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLV 45 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEE
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEe
Confidence 699999976 3333555558999999875
No 324
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.74 E-value=23 Score=23.51 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=16.9
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 045338 78 KYFCEFCGKYA--------VKRKAVGIWGCK 100 (134)
Q Consensus 78 kY~CpfCGk~~--------VKR~avGIW~Ck 100 (134)
...|.|||.+. |+..+.-.|-|.
T Consensus 4 ~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 34 (66)
T 3j21_V 4 WNVCSYCGKPFEPGTGKMYVRNDGRVLFFCS 34 (66)
T ss_dssp CCBCTTTCSBCCTTCCEEEECSSSCEEEESS
T ss_pred eeEecCcCCcccCCCCeEEEecCCcEEEEEC
Confidence 46899998764 666677777775
No 325
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=24.69 E-value=20 Score=27.58 Aligned_cols=22 Identities=14% Similarity=0.164 Sum_probs=16.5
Q ss_pred cccCCCCcee--------eEEeeeeeeeeC
Q 045338 79 YFCEFCGKYA--------VKRKAVGIWGCK 100 (134)
Q Consensus 79 Y~CpfCGk~~--------VKR~avGIW~Ck 100 (134)
+.|.|||... |+..+.-.|-|.
T Consensus 4 ~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~Fcs 33 (157)
T 2zkr_u 4 ELCSFSGYKIYPGHGRRYARTDGKVFQFLN 33 (157)
T ss_dssp CBCTTTCCBCCTTCCEEEECTTSCEEEESS
T ss_pred eeecCcCCcccCCCceEEEeeCCcEEEEec
Confidence 6899999875 666666777775
No 326
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=24.65 E-value=36 Score=22.88 Aligned_cols=28 Identities=32% Similarity=0.780 Sum_probs=18.3
Q ss_pred ccccCCCCcee--eEEeeeeeeeeCCCCeeEecc
Q 045338 78 KYFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 78 kY~CpfCGk~~--VKR~avGIW~CkkCgkt~AGG 109 (134)
.-.|..|++.- .+|. =||+.||..|-+-
T Consensus 9 ~~~C~~C~~~F~~~~Rr----HHCR~CG~vfC~~ 38 (88)
T 1wfk_A 9 ESRCYGCAVKFTLFKKE----YGCKNCGRAFCNG 38 (88)
T ss_dssp CSBCTTTCCBCCSSSCE----EECSSSCCEEETT
T ss_pred CCCCcCcCCcccCcccc----ccCCCCCCEEChh
Confidence 34688888752 3333 3788888887664
No 327
>1hcq_A Protein (estrogen receptor); protein-DNA complex, complexed with drug, transcription/DNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: g.39.1.2 PDB: 1hcp_A 4aa6_A
Probab=24.60 E-value=20 Score=24.28 Aligned_cols=26 Identities=31% Similarity=1.014 Sum_probs=19.5
Q ss_pred cccccCCCCceeeEEeeeeeeeeCCCC
Q 045338 77 SKYFCEFCGKYAVKRKAVGIWGCKDCG 103 (134)
Q Consensus 77 akY~CpfCGk~~VKR~avGIW~CkkCg 103 (134)
..-.|..||..+.- .-.|+|.|..|.
T Consensus 3 ~~~~C~VCg~~a~g-~hyGv~sC~aCk 28 (84)
T 1hcq_A 3 ETRYCAVCNDYASG-YHYGVWSCEGCK 28 (84)
T ss_dssp CCCBCTTTCSBCCE-EETTEEECHHHH
T ss_pred CCCcCcEECCCCCC-eeeCccchHHhh
Confidence 45679999987643 457899998884
No 328
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.51 E-value=31 Score=21.30 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=23.5
Q ss_pred ccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++.... +.....|| |..|++.+.|+.|.+
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHRECLVCTGCQTPLAGQQFTS 58 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTTCBCSSSCCBCTTCCEEE
T ss_pred cCCCCCCEecCcEEEECCchhhhhhCCcccCCCcCCCCeeEe
Confidence 59999986422 22335775 889999998876654
No 329
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=24.37 E-value=31 Score=22.73 Aligned_cols=27 Identities=33% Similarity=0.717 Sum_probs=18.0
Q ss_pred cccCCCCcee--eEEeeeeeeeeCCCCeeEecc
Q 045338 79 YFCEFCGKYA--VKRKAVGIWGCKDCGKVKAGG 109 (134)
Q Consensus 79 Y~CpfCGk~~--VKR~avGIW~CkkCgkt~AGG 109 (134)
-.|..|++.- .+|. -||+.||..|-+.
T Consensus 22 ~~C~~C~~~Fs~~~Rr----HHCR~CG~v~C~~ 50 (84)
T 1z2q_A 22 PACNGCGCVFTTTVRR----HHCRNCGYVLCGD 50 (84)
T ss_dssp CBCTTTCCBCCTTSCC----EECTTTCCEECTG
T ss_pred CCCcCcCCccccchhc----ccccCCCcEEChH
Confidence 4688888752 3333 3888888887664
No 330
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.34 E-value=43 Score=20.64 Aligned_cols=34 Identities=24% Similarity=0.430 Sum_probs=22.9
Q ss_pred ccCCCCceee-----EE--eeeeeee-----eCCCCeeEecccccc
Q 045338 80 FCEFCGKYAV-----KR--KAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 80 ~CpfCGk~~V-----KR--~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.|+.|++... .. .....|| |..|++.+.+..|.+
T Consensus 7 ~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF~C~~C~~~L~~~~f~~ 52 (76)
T 1x68_A 7 GCVACSKPISGLTGAKFICFQDSQWHSECFNCGKCSVSLVGKGFLT 52 (76)
T ss_dssp CCTTTCCCCCTTTTCCEEEETTEEEEGGGCBCTTTCCBCSSSCEEE
T ss_pred CCccCCCcccCCCCceeEEECCcccCcccCChhhCCCcCCCCceEe
Confidence 6899988643 22 2234776 888998888776653
No 331
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=23.74 E-value=12 Score=25.01 Aligned_cols=24 Identities=33% Similarity=0.822 Sum_probs=16.2
Q ss_pred ccCCCCceeeEEeeeeeeeeCCCC
Q 045338 80 FCEFCGKYAVKRKAVGIWGCKDCG 103 (134)
Q Consensus 80 ~CpfCGk~~VKR~avGIW~CkkCg 103 (134)
.|..||...--|.+.=||.|.-|-
T Consensus 35 ~CaRCGg~v~lr~~k~~WvC~lC~ 58 (62)
T 2a20_A 35 FCARCGGRVSLRSNKVMWVCNLCR 58 (62)
T ss_dssp ECTTSEEEEESSTTCEEEEEHHHH
T ss_pred eecccCCEeeecCCeEEEEehhhh
Confidence 466666554446778889987764
No 332
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=23.64 E-value=16 Score=32.69 Aligned_cols=26 Identities=15% Similarity=-0.103 Sum_probs=13.4
Q ss_pred cCCCC-ceeeEEe-eee--eeeeC---CCCeeE
Q 045338 81 CEFCG-KYAVKRK-AVG--IWGCK---DCGKVK 106 (134)
Q Consensus 81 CpfCG-k~~VKR~-avG--IW~Ck---kCgkt~ 106 (134)
||.|| +..+.|. ..| .|.|. .|+.++
T Consensus 575 CP~Cg~g~l~~r~~k~G~~f~gCs~yp~C~f~~ 607 (633)
T 2gai_A 575 YLKCECGKTRSVKNDEIAVIDDGKIFLGRKDSE 607 (633)
T ss_dssp EEECSSSCCEECCTTSBCEEETTEEEC------
T ss_pred CcccCCCcceeecccCCCeEEeCCCCcCCCCee
Confidence 99998 6655543 233 78885 387664
No 333
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=23.64 E-value=42 Score=21.12 Aligned_cols=13 Identities=31% Similarity=0.838 Sum_probs=10.9
Q ss_pred eeeeCCCCeeEec
Q 045338 96 IWGCKDCGKVKAG 108 (134)
Q Consensus 96 IW~CkkCgkt~AG 108 (134)
.|.|..||++.-+
T Consensus 3 ~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 3 KWQCVVCGFIYDE 15 (55)
T ss_dssp EEEETTTCCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5999999998765
No 334
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.62 E-value=24 Score=22.14 Aligned_cols=36 Identities=22% Similarity=0.369 Sum_probs=24.6
Q ss_pred ccccCCCCceeeE---Eeeeeeee-----eCCCCeeEecccccc
Q 045338 78 KYFCEFCGKYAVK---RKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 78 kY~CpfCGk~~VK---R~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
.-.|+.|++...- +..--.|| |..|++.+.++.|..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 58 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECYVCTDCGTNLKQKGHFF 58 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTTSCSSSCCCHHHHCCEE
T ss_pred CCccccCCCCccCcEEEECcceeCcCcCeeCCCCCCCCCCCeEe
Confidence 4579999986522 22334786 889999888776553
No 335
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=23.17 E-value=50 Score=23.71 Aligned_cols=31 Identities=13% Similarity=0.364 Sum_probs=24.5
Q ss_pred hhcccccCCCCceeeEEe-------eeeeeeeCCCCee
Q 045338 75 QHSKYFCEFCGKYAVKRK-------AVGIWGCKDCGKV 105 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR~-------avGIW~CkkCgkt 105 (134)
+.-.|||..|+..+.+.. ++=|=+|..|...
T Consensus 10 ~~l~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~ 47 (100)
T 2e2z_A 10 MMIAFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVR 47 (100)
T ss_dssp EEEEEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCE
T ss_pred EEEEEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccc
Confidence 345689999998887766 6778899999854
No 336
>1zso_A Hypothetical protein; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium, SGPP; 2.17A {Plasmodium falciparum} SCOP: b.166.1.1
Probab=23.14 E-value=35 Score=25.89 Aligned_cols=25 Identities=8% Similarity=-0.212 Sum_probs=19.3
Q ss_pred ccCCCCceee---------------EEeeeeeeeeCCCCe
Q 045338 80 FCEFCGKYAV---------------KRKAVGIWGCKDCGK 104 (134)
Q Consensus 80 ~CpfCGk~~V---------------KR~avGIW~CkkCgk 104 (134)
+|+.||...- +..+.=+|+|+.|++
T Consensus 39 kC~~C~E~~~kv~v~~~e~~ei~gsRG~aNfv~KCk~C~r 78 (164)
T 1zso_A 39 RDSTSSLTRDNIQFRKTDILEIPNSRGTANFMIKWTEYPK 78 (164)
T ss_dssp EETTSSCEEEEEEECTTCBEECTTSSCEESEEECCSSSSC
T ss_pred EECCCCcccCCEEEcchheeecCCCCcceeEEEeccccCC
Confidence 6999987643 345677899999986
No 337
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=22.71 E-value=22 Score=27.44 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=16.7
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 045338 78 KYFCEFCGKYA--------VKRKAVGIWGCK 100 (134)
Q Consensus 78 kY~CpfCGk~~--------VKR~avGIW~Ck 100 (134)
.+.|.|||... |+..+.-.|-|.
T Consensus 5 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcs 35 (158)
T 4a17_T 5 TGTCSFCEYRIYPGRGQRFIAKDGRGFFFLT 35 (158)
T ss_dssp CEECTTTCCEECTTCCEEEECTTSCEEEESC
T ss_pred EEEecCcCCcccCCCCeEEEeeCCceEEEEc
Confidence 46799999875 666666677775
No 338
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=22.45 E-value=72 Score=20.00 Aligned_cols=26 Identities=23% Similarity=0.392 Sum_probs=18.4
Q ss_pred cccCCCCceeeEEeeeeeeeeC--CCCeeE
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCK--DCGKVK 106 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~Ck--kCgkt~ 106 (134)
..||.|...-.- ..|.=.|. .|+..+
T Consensus 11 L~CP~c~~~L~~--~~~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 11 LACPACHAPLEE--RDAELICTGQDCGLAY 38 (56)
T ss_dssp CCCSSSCSCEEE--ETTEEEECSSSCCCEE
T ss_pred eeCCCCCCccee--cCCEEEcCCcCCCcEE
Confidence 479999987433 22777899 898543
No 339
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=22.32 E-value=23 Score=27.15 Aligned_cols=23 Identities=13% Similarity=-0.039 Sum_probs=16.5
Q ss_pred ccccCCCCcee--------eEEeeeeeeeeC
Q 045338 78 KYFCEFCGKYA--------VKRKAVGIWGCK 100 (134)
Q Consensus 78 kY~CpfCGk~~--------VKR~avGIW~Ck 100 (134)
.+.|.|||... |+..+.-.|-|.
T Consensus 3 ~~~CsFcg~~IyPG~G~~fVr~Dgkvf~Fcs 33 (155)
T 3izc_Z 3 VEIDSFSGAKIYPGRGTLFVRGDSKIFRFQN 33 (155)
T ss_dssp CEECTTTCSEECTTCCEEEECTTCCEEEESS
T ss_pred eeEecCcCCcccCCCCeEEEecCCCEEEEEc
Confidence 35799999875 666666677765
No 340
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.30 E-value=29 Score=22.10 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=24.5
Q ss_pred ccccCCCCceee--EEe-e-eeeee-----eCCCCeeEeccccc
Q 045338 78 KYFCEFCGKYAV--KRK-A-VGIWG-----CKDCGKVKAGGAYT 112 (134)
Q Consensus 78 kY~CpfCGk~~V--KR~-a-vGIW~-----CkkCgkt~AGGAy~ 112 (134)
.-.|+.|++... .++ + --+|| |..|+..+.++.|.
T Consensus 15 ~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~ 58 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYE 58 (82)
T ss_dssp SCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEE
T ss_pred CCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCcee
Confidence 346999998753 222 2 24785 88999999888875
No 341
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.84 E-value=24 Score=23.66 Aligned_cols=32 Identities=28% Similarity=0.297 Sum_probs=21.2
Q ss_pred hhcccccCCCCceeeEEeeeee--eeeCCCCeeEeccc
Q 045338 75 QHSKYFCEFCGKYAVKRKAVGI--WGCKDCGKVKAGGA 110 (134)
Q Consensus 75 qhakY~CpfCGk~~VKR~avGI--W~CkkCgkt~AGGA 110 (134)
+..+..|..|++... =+|+ .+| .||.+|-+--
T Consensus 12 ~~~~~rC~~C~kk~g---L~~~egf~C-rCg~~FC~~H 45 (67)
T 1x4w_A 12 QKSRRRCFQCQTKLE---LVQQELGSC-RCGYVFCMLH 45 (67)
T ss_dssp CSCTTBCSSSCCBCC---HHHHHHHCC-SSSCCCCTTT
T ss_pred CccCCcchhhCCeec---ccccCceEe-cCCCEehhcc
Confidence 345668999987532 1232 699 8999987643
No 342
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=21.73 E-value=52 Score=20.48 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=10.7
Q ss_pred eeeeCCCCeeEec
Q 045338 96 IWGCKDCGKVKAG 108 (134)
Q Consensus 96 IW~CkkCgkt~AG 108 (134)
.|.|..||++.-+
T Consensus 2 ~~~C~~CGyvYd~ 14 (52)
T 1yk4_A 2 KLSCKICGYIYDE 14 (52)
T ss_dssp EEEESSSSCEEET
T ss_pred cEEeCCCCeEECC
Confidence 5999999988754
No 343
>3nrl_A Uncharacterized protein rumgna_01417; beta protein, structural genomics, PSI-2, protein structure initiative; 1.90A {Ruminococcus gnavus}
Probab=21.50 E-value=23 Score=24.79 Aligned_cols=17 Identities=24% Similarity=0.470 Sum_probs=15.1
Q ss_pred eeCCCCeeEeccccccc
Q 045338 98 GCKDCGKVKAGGAYTLN 114 (134)
Q Consensus 98 ~CkkCgkt~AGGAy~p~ 114 (134)
+|..|-..+.||.|.|.
T Consensus 32 HCGE~feV~v~~~Wipt 48 (81)
T 3nrl_A 32 HCGECFDVKVKDVWVPV 48 (81)
T ss_dssp CTTCEEEEEETTEEEEE
T ss_pred ccccEEEEEECCEEEEE
Confidence 89999999999999873
No 344
>3mhs_C SAGA-associated factor 11; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3m99_B 3mhh_C 4fjc_C 4fk5_C 4fip_C 2lo2_A 3kjl_E 3kik_E
Probab=21.41 E-value=30 Score=24.85 Aligned_cols=23 Identities=13% Similarity=0.429 Sum_probs=19.3
Q ss_pred eeeeeeeeCCCCeeEeccccccc
Q 045338 92 KAVGIWGCKDCGKVKAGGAYTLN 114 (134)
Q Consensus 92 ~avGIW~CkkCgkt~AGGAy~p~ 114 (134)
.+.-.-.|..|+..+|++-|.|.
T Consensus 66 ~~s~~~~C~nC~R~vaa~RFApH 88 (99)
T 3mhs_C 66 ESSQYIHCENCGRDVSANRLAAH 88 (99)
T ss_dssp TTSCEEECTTTCCEEEGGGHHHH
T ss_pred cCCCeEECCCCCCCchhhhhHHH
Confidence 46667899999999999988764
No 345
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=21.11 E-value=34 Score=21.60 Aligned_cols=11 Identities=27% Similarity=1.189 Sum_probs=9.2
Q ss_pred eeeeeCCCCee
Q 045338 95 GIWGCKDCGKV 105 (134)
Q Consensus 95 GIW~CkkCgkt 105 (134)
.-|+|.+|++.
T Consensus 12 D~WkC~~C~~~ 22 (46)
T 2c6a_A 12 DYWKCTSCNEM 22 (46)
T ss_dssp GCEECTTTCCE
T ss_pred ceEeccccccc
Confidence 77999999853
No 346
>3gmf_A Protein-disulfide isomerase; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Novosphingobium aromaticivorans}
Probab=21.08 E-value=11 Score=28.19 Aligned_cols=14 Identities=21% Similarity=0.726 Sum_probs=10.5
Q ss_pred HhhhcccccCCCCc
Q 045338 73 VSQHSKYFCEFCGK 86 (134)
Q Consensus 73 ~sqhakY~CpfCGk 86 (134)
+.-...|.||+|.+
T Consensus 19 ivef~D~~Cp~C~~ 32 (205)
T 3gmf_A 19 LVEFVSYTCPHCSH 32 (205)
T ss_dssp EEEEECTTCHHHHH
T ss_pred EEEEECCCCHHHHH
Confidence 33456799999985
No 347
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=20.93 E-value=50 Score=22.91 Aligned_cols=15 Identities=27% Similarity=0.669 Sum_probs=11.7
Q ss_pred eeeeeeCCCCeeEec
Q 045338 94 VGIWGCKDCGKVKAG 108 (134)
Q Consensus 94 vGIW~CkkCgkt~AG 108 (134)
...|.|..||++.-+
T Consensus 33 m~~y~C~vCGyvYD~ 47 (87)
T 1s24_A 33 YLKWICITCGHIYDE 47 (87)
T ss_dssp CCEEEETTTTEEEET
T ss_pred CceEECCCCCeEecC
Confidence 346999999988764
No 348
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Probab=20.86 E-value=37 Score=22.42 Aligned_cols=31 Identities=32% Similarity=0.584 Sum_probs=16.8
Q ss_pred cccccCC--CCcee---------eEEe--eeeeeeeCC--CCeeEe
Q 045338 77 SKYFCEF--CGKYA---------VKRK--AVGIWGCKD--CGKVKA 107 (134)
Q Consensus 77 akY~Cpf--CGk~~---------VKR~--avGIW~Ckk--Cgkt~A 107 (134)
.+|.|+. ||+.- +++. +...+.|.- |++.|.
T Consensus 96 ~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~ 141 (155)
T 2gli_A 96 KPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT 141 (155)
T ss_dssp CCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEES
T ss_pred CCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccC
Confidence 4577776 77643 1122 223467766 777664
No 349
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.84 E-value=45 Score=20.14 Aligned_cols=35 Identities=20% Similarity=0.371 Sum_probs=23.9
Q ss_pred cccCCCCceee-----EEeeeeeee-----eCCCCeeEecccccc
Q 045338 79 YFCEFCGKYAV-----KRKAVGIWG-----CKDCGKVKAGGAYTL 113 (134)
Q Consensus 79 Y~CpfCGk~~V-----KR~avGIW~-----CkkCgkt~AGGAy~p 113 (134)
-.|+.|++... -+..-..|| |..|++.+.|..|..
T Consensus 6 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF~C~~C~~~L~~~~~~~ 50 (72)
T 1x61_A 6 SGCGGCGEDVVGDGAGVVALDRVFHVGCFVCSTCRAQLRGQHFYA 50 (72)
T ss_dssp CCCSSSCSCCCSSSCCEECSSSEECTTTCBCSSSCCBCTTSCEEE
T ss_pred CCCccCCCccCCCceEEEECCCeEcccCCcccccCCcCCcCcCEe
Confidence 46999998643 222334774 889999998776654
No 350
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding, chromatin regulator, cytoplasm, hydrolase, metal-binding, nucleus, phosphoprotein; 1.55A {Homo sapiens} PDB: 3gv4_A 3phd_A
Probab=20.83 E-value=63 Score=22.67 Aligned_cols=35 Identities=29% Similarity=0.542 Sum_probs=24.4
Q ss_pred cccCCCCceeeEEeeeeeeeeCCCCeeEeccccccccchHHHH
Q 045338 79 YFCEFCGKYAVKRKAVGIWGCKDCGKVKAGGAYTLNTASAVTV 121 (134)
Q Consensus 79 Y~CpfCGk~~VKR~avGIW~CkkCgkt~AGGAy~p~T~~~~tv 121 (134)
-.|..|+.. .++|-|=.||...- |-| ++..+-...
T Consensus 25 ~~C~~C~~~------~~~W~CL~CG~vgC-gr~-~~~HA~~H~ 59 (109)
T 3c5k_A 25 QPCGDCGTI------QENWVCLSCYQVYC-GRY-INGHMLQHH 59 (109)
T ss_dssp CCCTTTCCC------SSEEEETTTCCEEE-CTT-TTCHHHHHH
T ss_pred CcCccccCC------CCeeeeeecCcccc-CCC-cChHHHHHh
Confidence 469999875 36899999999994 444 344444433
No 351
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=20.70 E-value=44 Score=22.48 Aligned_cols=25 Identities=20% Similarity=0.575 Sum_probs=18.3
Q ss_pred ccccCCCCceeeEEeeeeeeeeCCCCeeE
Q 045338 78 KYFCEFCGKYAVKRKAVGIWGCKDCGKVK 106 (134)
Q Consensus 78 kY~CpfCGk~~VKR~avGIW~CkkCgkt~ 106 (134)
.|.|..|++.. ..-..+|..|+..+
T Consensus 47 ~~~C~~C~~~~----~~~~Y~C~~C~f~l 71 (89)
T 1v5n_A 47 VYTCDKCEEEG----TIWSYHCDECDFDL 71 (89)
T ss_dssp SCCCTTTSCCC----CSCEEECTTTCCCC
T ss_pred CeEeCCCCCcC----CCcEEEcCCCCCeE
Confidence 48999999873 23358999998654
No 352
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=20.67 E-value=50 Score=22.66 Aligned_cols=15 Identities=20% Similarity=0.516 Sum_probs=12.1
Q ss_pred eeeeeeCCCCeeEec
Q 045338 94 VGIWGCKDCGKVKAG 108 (134)
Q Consensus 94 vGIW~CkkCgkt~AG 108 (134)
..+|.|..||++.-+
T Consensus 25 m~~y~C~vCGyvYD~ 39 (81)
T 2kn9_A 25 YKLFRCIQCGFEYDE 39 (81)
T ss_dssp CCEEEETTTCCEEET
T ss_pred cceEEeCCCCEEEcC
Confidence 457999999998764
No 353
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=20.51 E-value=29 Score=18.92 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=8.4
Q ss_pred hcccccC--CCCcee
Q 045338 76 HSKYFCE--FCGKYA 88 (134)
Q Consensus 76 hakY~Cp--fCGk~~ 88 (134)
..+|.|+ .||+.-
T Consensus 16 ~k~~~C~~~~C~k~F 30 (47)
T 1ncs_A 16 DKTFECLFPGCTKTF 30 (47)
T ss_dssp TTEEECCCTTCCCEE
T ss_pred CCCeECCCCCCCCcc
Confidence 3568885 588753
No 354
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=20.49 E-value=41 Score=25.41 Aligned_cols=38 Identities=32% Similarity=0.740 Sum_probs=27.5
Q ss_pred hHhHHHHHHhhhcccccCCCCceeeEEee--eeeeeeCCCC
Q 045338 65 RKQIKKMEVSQHSKYFCEFCGKYAVKRKA--VGIWGCKDCG 103 (134)
Q Consensus 65 RK~vkkIE~sqhakY~CpfCGk~~VKR~a--vGIW~CkkCg 103 (134)
++.++++- +....-.|..||.......+ .||.-|-.|.
T Consensus 26 ~~~l~~L~-~~p~N~~CaDCga~~P~WaS~nlGvfiC~~CS 65 (147)
T 3dwd_A 26 RKVLKEVR-VQDENNVCFECGAFNPQWVSVTYGIWICLECS 65 (147)
T ss_dssp HHHHHHHH-TSTTTTBCTTTCCBSCCEEETTTTEEECHHHH
T ss_pred HHHHHHHH-cCcCCCccCCCCCCCCCeEEecccEeEhHhhC
Confidence 45555553 34556689999998877765 4999998884
Done!