Query 045340
Match_columns 136
No_of_seqs 143 out of 624
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 21:44:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3v7d_A Suppressor of kinetocho 100.0 1.4E-40 4.8E-45 253.3 11.3 102 1-103 54-168 (169)
2 2p1m_A SKP1-like protein 1A; F 100.0 5.9E-39 2E-43 241.8 8.2 102 1-103 44-160 (160)
3 2ast_A S-phase kinase-associat 100.0 1.4E-36 4.9E-41 227.9 11.7 100 1-101 46-159 (159)
4 1fs1_B SKP1, cyclin A/CDK2-ass 100.0 1.3E-32 4.4E-37 203.4 8.7 87 1-88 41-141 (141)
5 1hv2_A Elongin C, ELC1; protei 99.4 6.5E-14 2.2E-18 97.7 0.1 51 1-53 46-99 (99)
6 1vcb_B Protein (elongin C); tu 99.3 1.4E-13 4.9E-18 98.2 1.1 50 1-53 62-112 (112)
7 2fnj_C Transcription elongatio 99.3 9.9E-14 3.4E-18 96.2 -0.1 50 1-53 46-96 (96)
8 4ajy_C Transcription elongatio 99.1 1.9E-11 6.5E-16 84.3 1.2 49 1-52 47-96 (97)
9 2yy9_A Zinc finger and BTB dom 97.5 5.7E-05 1.9E-09 53.6 2.9 60 1-74 65-125 (135)
10 1buo_A POZ domain, protein (pr 96.9 0.0024 8.1E-08 44.0 6.3 54 1-68 67-121 (121)
11 3m5b_A Zinc finger and BTB dom 96.8 0.0015 5.3E-08 45.5 4.5 53 1-66 65-117 (119)
12 2vkp_A BTB/POZ domain-containi 96.7 0.0035 1.2E-07 41.9 5.9 53 1-67 55-108 (109)
13 3htm_A Speckle-type POZ protei 96.7 0.0056 1.9E-07 43.9 7.1 63 1-77 78-141 (172)
14 2if5_A Zinc finger and BTB dom 96.4 0.0089 3.1E-07 40.7 6.4 50 1-64 69-119 (120)
15 2vpk_A Myoneurin; transcriptio 96.4 0.008 2.7E-07 40.8 6.0 50 2-65 65-115 (116)
16 2q81_A MIZ-1 protein; BTB/POZ 96.4 0.0045 1.5E-07 42.5 4.7 50 2-65 67-117 (119)
17 3hve_A Gigaxonin; ubiquitin, c 96.3 0.0085 2.9E-07 46.1 6.6 58 1-72 77-135 (256)
18 4eoz_A Speckle-type POZ protei 96.3 0.0033 1.1E-07 43.9 3.8 59 1-73 69-128 (145)
19 1r29_A B-cell lymphoma 6 prote 96.3 0.0089 3E-07 41.2 5.9 50 2-65 74-124 (127)
20 3b84_A Zinc finger and BTB dom 96.1 0.0042 1.4E-07 42.7 3.4 51 1-65 64-115 (119)
21 2z8h_A Transcription regulator 96.0 0.006 2.1E-07 43.0 4.0 54 3-70 81-135 (138)
22 2ppi_A Gigaxonin; BTB domain, 95.9 0.0091 3.1E-07 42.6 4.5 50 1-64 93-143 (144)
23 3i3n_A Kelch-like protein 11; 95.6 0.019 6.6E-07 44.6 5.7 60 3-76 87-147 (279)
24 3hqi_A Speckle-type POZ protei 95.1 0.049 1.7E-06 42.8 6.5 62 2-77 219-281 (312)
25 3ga1_A Nucleus accumbens-assoc 94.9 0.0054 1.8E-07 42.7 0.3 50 3-66 76-126 (129)
26 3fkc_A Transcriptional regulat 93.3 0.11 3.7E-06 35.5 4.4 46 1-58 70-115 (116)
27 3ohu_A Transcription regulator 93.1 0.0054 1.9E-07 42.2 -2.6 48 2-62 75-123 (125)
28 2ihc_A Transcription regulator 90.5 0.022 7.4E-07 39.3 -1.8 48 3-64 74-122 (124)
29 2k9n_A MYB24; R2R3 domain, DNA 73.2 4.3 0.00015 27.3 4.1 36 61-96 24-66 (107)
30 1gv2_A C-MYB, MYB proto-oncoge 70.7 3.7 0.00013 27.3 3.2 36 61-96 27-69 (105)
31 1wgx_A KIAA1903 protein; MYB D 68.1 3.4 0.00012 26.8 2.5 21 61-81 34-54 (73)
32 3lsg_A Two-component response 67.9 21 0.00072 22.8 8.1 76 6-84 1-82 (103)
33 1h8a_C AMV V-MYB, MYB transfor 67.1 8.7 0.0003 26.5 4.6 36 61-96 50-92 (128)
34 4eef_G F-HB80.4, designed hema 66.4 1.2 4.3E-05 29.2 0.1 43 37-83 26-68 (74)
35 2cqq_A RSGI RUH-037, DNAJ homo 64.0 4.8 0.00016 25.8 2.6 20 61-81 34-53 (72)
36 3few_X Colicin S4; cell lysis, 63.5 7.6 0.00026 33.3 4.3 48 60-107 164-212 (505)
37 3osg_A MYB21; transcription-DN 60.2 12 0.00041 25.8 4.3 36 61-96 33-75 (126)
38 3zqc_A MYB3; transcription-DNA 58.6 5.6 0.00019 27.7 2.3 36 61-96 25-67 (131)
39 1x41_A Transcriptional adaptor 57.5 7.7 0.00026 23.4 2.6 21 61-81 31-51 (60)
40 1ug2_A 2610100B20RIK gene prod 54.0 9.2 0.00031 26.1 2.7 20 62-81 59-78 (95)
41 2yus_A SWI/SNF-related matrix- 53.8 10 0.00034 24.5 2.8 39 37-81 22-60 (79)
42 2eqr_A N-COR1, N-COR, nuclear 53.6 8.6 0.00029 23.4 2.3 20 62-81 35-54 (61)
43 2cjj_A Radialis; plant develop 53.4 8.4 0.00029 25.9 2.4 21 61-81 34-54 (93)
44 2cqr_A RSGI RUH-043, DNAJ homo 52.2 5.7 0.00019 25.5 1.4 22 60-81 43-64 (73)
45 1h8a_C AMV V-MYB, MYB transfor 51.8 7.9 0.00027 26.7 2.2 33 64-96 1-40 (128)
46 3few_X Colicin S4; cell lysis, 51.6 15 0.0005 31.5 4.1 42 60-101 251-293 (505)
47 1h89_C C-MYB, MYB proto-oncoge 50.6 16 0.00053 26.0 3.7 36 61-96 81-123 (159)
48 2qq4_A Iron-sulfur cluster bio 50.0 16 0.00054 25.9 3.6 37 45-81 54-91 (138)
49 2kw0_A CCMH protein; oxidoredu 50.0 11 0.00037 25.4 2.5 19 62-80 47-66 (90)
50 2hl7_A Cytochrome C-type bioge 49.4 11 0.00038 24.9 2.5 19 62-80 50-69 (84)
51 3lvl_A NIFU-like protein; prot 49.0 15 0.00051 25.8 3.3 38 44-81 53-91 (129)
52 2yum_A ZZZ3 protein, zinc fing 49.0 12 0.00043 23.3 2.6 21 60-80 35-55 (75)
53 2elk_A SPCC24B10.08C protein; 48.8 14 0.00047 22.2 2.7 20 61-80 32-52 (58)
54 1xjs_A NIFU-like protein; SR17 47.3 18 0.00062 25.9 3.6 38 44-81 55-93 (147)
55 1pd7_B MAD1; PAH2, SIN3, eukar 45.8 7 0.00024 20.6 0.8 12 41-52 5-16 (26)
56 1su0_B NIFU like protein ISCU; 44.2 24 0.00083 25.6 3.9 38 44-81 54-92 (159)
57 2jsp_A Transcriptional regulat 43.5 10 0.00034 25.5 1.6 19 69-87 42-60 (87)
58 1h89_C C-MYB, MYB proto-oncoge 43.2 9.5 0.00033 27.2 1.5 36 61-96 29-71 (159)
59 3g5o_A Uncharacterized protein 40.7 56 0.0019 21.9 5.1 48 37-84 48-97 (108)
60 4eo3_A Bacterioferritin comigr 40.3 8.6 0.00029 30.6 1.0 36 42-87 246-281 (322)
61 1guu_A C-MYB, MYB proto-oncoge 39.9 17 0.0006 20.9 2.1 21 61-81 26-46 (52)
62 2z7e_A ISCU protein, NIFU-like 39.3 18 0.00062 26.4 2.5 37 45-81 53-90 (157)
63 3mkl_A HTH-type transcriptiona 38.6 81 0.0028 20.6 8.4 79 2-83 2-84 (120)
64 2cu7_A KIAA1915 protein; nucle 37.6 24 0.00082 21.9 2.6 21 61-81 31-51 (72)
65 3drz_A BTB/POZ domain-containi 37.6 26 0.00088 23.4 2.9 26 41-66 81-106 (107)
66 2lr8_A CAsp8-associated protei 41.5 8 0.00027 25.0 0.0 21 60-81 38-58 (70)
67 2d9a_A B-MYB, MYB-related prot 35.1 25 0.00087 20.8 2.3 21 61-81 31-51 (60)
68 3hr0_A COG4; conserved oligome 34.5 21 0.00073 28.0 2.4 24 71-94 238-261 (263)
69 1gvd_A MYB proto-oncogene prot 34.2 19 0.00064 20.8 1.6 21 61-81 26-46 (52)
70 4eb5_C NIFU protein (NIFU-1); 34.1 24 0.00083 25.6 2.5 37 45-81 48-85 (153)
71 3tnt_A SARS coronavirus main p 33.7 27 0.00092 28.3 2.9 49 40-91 248-296 (306)
72 3oio_A Transcriptional regulat 33.7 95 0.0032 19.9 8.4 75 5-84 5-86 (113)
73 2ftc_M Mitochondrial ribosomal 33.6 28 0.00096 23.8 2.6 25 61-89 13-37 (110)
74 1tc3_C Protein (TC3 transposas 33.2 45 0.0015 17.4 3.1 17 67-83 18-34 (51)
75 3d55_A Antitoxin, uncharacteri 31.7 27 0.00092 22.5 2.2 47 37-83 39-90 (91)
76 3kf9_B MLCK2, myosin light cha 31.2 23 0.00078 17.9 1.3 13 40-52 6-18 (22)
77 1i4j_A 50S ribosomal protein L 30.6 33 0.0011 23.4 2.6 22 61-82 17-38 (110)
78 2b67_A COG0778: nitroreductase 30.5 11 0.00036 27.1 -0.0 19 68-86 156-174 (204)
79 2dim_A Cell division cycle 5-l 30.5 34 0.0012 20.9 2.4 21 61-81 32-52 (70)
80 1ofc_X ISWI protein; nuclear p 30.2 36 0.0012 27.5 3.1 43 35-82 112-154 (304)
81 2fre_A NAD(P)H-flavin oxidored 29.4 13 0.00046 26.8 0.4 36 41-86 118-153 (200)
82 1vfr_A NAD(P)H\:FMN oxidoreduc 28.9 15 0.00051 26.4 0.6 19 68-86 164-183 (218)
83 2llk_A Cyclin-D-binding MYB-li 28.6 40 0.0014 21.4 2.6 20 61-81 45-64 (73)
84 1x3u_A Transcriptional regulat 28.3 68 0.0023 19.1 3.6 22 62-83 23-44 (79)
85 3r8s_S 50S ribosomal protein L 28.1 38 0.0013 23.1 2.6 21 61-81 17-37 (110)
86 3h4o_A Nitroreductase family p 28.0 16 0.00055 26.5 0.6 35 42-86 120-154 (191)
87 3hm5_A DNA methyltransferase 1 27.6 70 0.0024 21.4 3.7 20 62-81 53-77 (93)
88 2guz_B Mitochondrial import in 27.6 49 0.0017 20.5 2.8 22 71-92 1-25 (65)
89 2iw5_B Protein corest, REST co 27.4 38 0.0013 26.6 2.7 21 61-81 155-175 (235)
90 3aaf_A Werner syndrome ATP-dep 27.0 21 0.00071 25.0 1.0 52 39-94 16-73 (134)
91 2din_A Cell division cycle 5-l 26.7 41 0.0014 20.3 2.3 21 60-81 30-50 (66)
92 1ywq_A Nitroreductase family p 26.6 20 0.00069 25.2 0.9 16 72-87 156-171 (200)
93 2isk_A BLUB; oxidoreductase, f 25.6 18 0.00062 26.5 0.5 19 68-86 169-187 (230)
94 1nox_A NADH oxidase; flavoenzy 25.1 19 0.00066 25.6 0.6 19 69-87 158-176 (205)
95 3ge6_A Nitroreductase; structu 25.1 16 0.00053 26.4 0.1 20 68-87 163-183 (212)
96 3bem_A Putative NAD(P)H nitror 25.0 16 0.00056 26.5 0.2 18 69-86 169-186 (218)
97 3o3r_A Aldo-keto reductase fam 24.8 96 0.0033 24.0 4.7 29 69-97 263-292 (316)
98 3kat_A Nacht, LRR and PYD doma 24.7 31 0.0011 23.6 1.5 49 85-135 47-99 (107)
99 3gag_A Putative NADH dehydroge 24.4 23 0.00079 25.3 0.9 19 68-86 157-175 (206)
100 2jpc_A SSRB; DNA binding prote 24.3 55 0.0019 18.5 2.5 17 67-83 10-26 (61)
101 4dn2_A Nitroreductase; structu 23.3 30 0.001 25.1 1.4 18 70-87 157-174 (208)
102 2guz_A Mitochondrial import in 22.6 1E+02 0.0035 18.7 3.6 24 70-93 10-34 (71)
103 4dyq_A Gene 1 protein; GP1, oc 22.5 71 0.0024 22.1 3.2 27 55-84 16-42 (140)
104 2wqf_A Copper induced nitrored 22.4 23 0.00079 24.9 0.5 16 71-86 156-171 (202)
105 2zjr_P 50S ribosomal protein L 21.9 51 0.0017 23.4 2.3 22 61-82 38-59 (134)
106 3ge5_A Putative NAD(P)H:FMN ox 21.8 25 0.00084 25.7 0.6 36 42-87 129-164 (198)
107 1j2j_B ADP-ribosylation factor 21.7 79 0.0027 18.6 2.7 19 60-78 9-27 (45)
108 1je8_A Nitrate/nitrite respons 20.9 75 0.0026 19.6 2.8 16 68-83 34-49 (82)
109 1vq8_R 50S ribosomal protein L 20.5 61 0.0021 23.6 2.5 21 61-81 29-49 (155)
110 1b0n_B Protein (SINI protein); 20.5 44 0.0015 20.4 1.5 17 69-85 25-41 (57)
111 3qdl_A Oxygen-insensitive NADP 20.2 21 0.00071 25.9 -0.1 21 67-87 160-181 (210)
No 1
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=100.00 E-value=1.4e-40 Score=253.31 Aligned_cols=102 Identities=34% Similarity=0.410 Sum_probs=88.9
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCC--------c---hHH-HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGT--------S---EDM-VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR 67 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~--------~---~~l-~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ 67 (136)
+|||+|.+|+||++||+ |++++... . .++ ++|+++ |.++||+|++|||||+|++|+++||++||+|
T Consensus 54 lpnV~s~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~LfeLi~AAnyLdIk~Lldl~c~~vA~~ 132 (169)
T 3v7d_A 54 VPNVRSSVLQKVIEWAEHHRDSNFPDEDDDDSRKSAPVDSWDREFLKV-DQEMLYEIILAANYLNIKPLLDAGCKVVAEM 132 (169)
T ss_dssp CTTCCHHHHHHHHHHHHHTTTCCCCC--------CCCCCHHHHHHTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcccCCCcccccccccccccccHHHHHHHcC-CHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 68999999999999999 98775321 1 123 889996 9999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340 68 IKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC 103 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~ 103 (136)
|+||||||||++|||+||||||||+++|+||+|+++
T Consensus 133 ikgktpeeiR~~f~I~nd~t~eEe~~ir~en~W~~~ 168 (169)
T 3v7d_A 133 IRGRSPEEIRRTFNIVNDFTPEEEAAIRRENEWAED 168 (169)
T ss_dssp HTTCCHHHHHHHHTCCCCCCHHHHHHHHTTC-----
T ss_pred HcCCCHHHHHHHcCCCCCCCHHHHHHHHHhcccccc
Confidence 999999999999999999999999999999999987
No 2
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=100.00 E-value=5.9e-39 Score=241.76 Aligned_cols=102 Identities=36% Similarity=0.538 Sum_probs=73.5
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCC----------CchHH----HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDG----------TSEDM----VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA 65 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~----------~~~~l----~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA 65 (136)
+|||+|.+|+||++||+ |++++.. ...++ ++|+++ |.++||+|+.|||||+|++|+++||++||
T Consensus 44 l~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~~i~~wD~~Fl~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA 122 (160)
T 2p1m_A 44 LPNVTSKILAKVIEYCKRHVEAAASKAEAVEGAATSDDDLKAWDADFMKI-DQATLFELILAANYLNIKNLLDLTCQTVA 122 (160)
T ss_dssp CTTSCHHHHHHHHHC-------------------------------------------CHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHHHHHcccCCCcccccccccccccchhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 68999999999999999 8865421 11122 889996 99999999999999999999999999999
Q ss_pred HHhcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchhhh
Q 045340 66 NRIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKISC 103 (136)
Q Consensus 66 ~~ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~~~ 103 (136)
+||+||||+|||++|||+||||||||++||+||+|+++
T Consensus 123 ~~ikgkt~eeir~~f~I~nd~t~eEe~~ir~en~w~~~ 160 (160)
T 2p1m_A 123 DMIKGKTPEEIRTTFNIKNDFTPEEEEEVRRENQWAFE 160 (160)
T ss_dssp HTTTTCCHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCccccC
Confidence 99999999999999999999999999999999999974
No 3
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=100.00 E-value=1.4e-36 Score=227.87 Aligned_cols=100 Identities=35% Similarity=0.449 Sum_probs=90.7
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCC---------c---hHH-HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGT---------S---EDM-VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN 66 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~---------~---~~l-~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~ 66 (136)
+|+|+|.+|+||++||+ |++++... . .+. ++|+++ +.+.|++|+.|||||+|++|+++||++||+
T Consensus 46 l~~V~~~iL~kViey~~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~i-d~~~l~eLl~AAnyL~I~~Lld~~c~~va~ 124 (159)
T 2ast_A 46 LPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVAN 124 (159)
T ss_dssp CTTSCHHHHHHHHHHHHHTTTCCC-----------CCCCCHHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHcCcCCCCcccccccccchhhhhHHHHHHHcC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 68999999999999999 98765211 1 123 889996 999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHcCCCCCCCHHHHHHHhhhhchh
Q 045340 67 RIKNKSVEYIRKFFRIENNFMPEEEEAARNDSTKI 101 (136)
Q Consensus 67 ~ikgKt~eEIR~~fgI~~D~T~EEee~ir~en~w~ 101 (136)
+|+||||+|||++|||+||||||||++||+||+|+
T Consensus 125 ~i~gkt~eeir~~f~I~~d~t~eEe~~ir~en~w~ 159 (159)
T 2ast_A 125 MIKGKTPEEIRKTFNIKNDFTEEEEAQVRKENQWC 159 (159)
T ss_dssp HHSSCCHHHHHHHTTCCCCSCTTHHHHHHHHTTTC
T ss_pred HHcCCCHHHHHHHcCCCCCCCHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999996
No 4
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=99.97 E-value=1.3e-32 Score=203.36 Aligned_cols=87 Identities=37% Similarity=0.499 Sum_probs=70.5
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCC---------chH---H-HhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGT---------SED---M-VEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN 66 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~---------~~~---l-~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~ 66 (136)
+|||+|.+|+||++||+ |++++... ..+ + ++|+++ |.++||+|+.|||||+|++|+++||++||+
T Consensus 41 l~~V~~~iL~kVieyc~~h~~~~~~~~~~~~~~~~~~~i~~wD~~F~~v-d~~~l~eLi~AAnyL~I~~Lldl~c~~vA~ 119 (141)
T 1fs1_B 41 LPNVNAAILKKVIQWCTHHKDDPPPPEDDENKEKRTDDIPVWDQEFLKV-DQGTLFELILAANYLDIKGLLDVTCKTVAN 119 (141)
T ss_dssp CTTCCHHHHHHHHHHHHHHTTCC-----------------HHHHHHTCS-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHhccCCCccccccccccchhhhhHHHHHHHhC-CHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68999999999999999 88765211 112 3 889996 999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHcCCCCCCCH
Q 045340 67 RIKNKSVEYIRKFFRIENNFMP 88 (136)
Q Consensus 67 ~ikgKt~eEIR~~fgI~~D~T~ 88 (136)
+|+||||||||++|||+|||||
T Consensus 120 ~ikgkt~eeiR~~f~I~~d~tp 141 (141)
T 1fs1_B 120 MIKGKTPEEIRKTFNIKNDFTE 141 (141)
T ss_dssp HHTTCCHHHHHHHTC-------
T ss_pred HHcCCCHHHHHHHcCCCCCCCC
Confidence 9999999999999999999997
No 5
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1
Probab=99.36 E-value=6.5e-14 Score=97.68 Aligned_cols=51 Identities=25% Similarity=0.319 Sum_probs=41.0
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCC--CCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSD--GTSEDMVEFGKGKSNDELKEMLLVANYLNI 53 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~--~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I 53 (136)
+|||+|.+|+||++||+ |++++. ....++.+| ++ |+++||+|+.|||||||
T Consensus 46 lp~V~~~iL~kVieyc~~h~~~~~~~~~~~~i~~w-~v-d~~~lfeLi~AAnyLdI 99 (99)
T 1hv2_A 46 LKQFDSHILEKAVEYLNYNLKYSGVSEDDDEIPEF-EI-PTEMSLELLLAADYLSI 99 (99)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHHCSSCSSCCCC-CC-CHHHHHHHHHHHHHHCC
T ss_pred cCCcCHHHHHHHHHHHHHhcccCCCccccccCCCc-cC-CHHHHHHHHHHHHHhCc
Confidence 58999999999999999 885432 112235567 65 99999999999999997
No 6
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1
Probab=99.34 E-value=1.4e-13 Score=98.17 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=40.8
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNI 53 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I 53 (136)
+|||+|.+|+||++||+ |++++.. ..++.+| ++ |+++||+|++|||||+|
T Consensus 62 lpnV~s~iL~kVieyc~~h~~~~~~-~~~i~~w-~v-d~~~lfeLi~AAnyLdI 112 (112)
T 1vcb_B 62 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLDC 112 (112)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHSSC-SSCCCCC-CC-CHHHHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhhhccCC-cCCCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence 68999999999999999 8764321 2234567 65 99999999999999997
No 7
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B
Probab=99.33 E-value=9.9e-14 Score=96.18 Aligned_cols=50 Identities=22% Similarity=0.205 Sum_probs=40.5
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhch
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNI 53 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I 53 (136)
+|||+|.+|+||++||+ |++++.. .+++.+| ++ |+++||+|+.|||||+|
T Consensus 46 l~~V~~~iL~kVieyc~~h~~~~~~-~~~i~~w-~v-d~~~l~eLi~AAnyLdI 96 (96)
T 2fnj_C 46 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLDC 96 (96)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHSC-CSCCCCC-CC-CTTTHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHccccCCC-cccCCCc-cc-CHHHHHHHHHHHHHhCc
Confidence 68999999999999999 8754321 1234557 65 99999999999999997
No 8
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E*
Probab=99.08 E-value=1.9e-11 Score=84.27 Aligned_cols=49 Identities=22% Similarity=0.216 Sum_probs=39.6
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhc
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLN 52 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~ 52 (136)
+|||+|.+|+||++||+ |++++.. ..++.+| ++ +.+.|++|+.|||||+
T Consensus 47 l~~V~~~iL~kViey~~~h~~~~~~-~~~i~~~-~i-~~~~l~eLl~AAnyL~ 96 (97)
T 4ajy_C 47 FREIPSHVLSKVCMYFTYKVRYTNS-STEIPEF-PI-APEIALELLMAANFLD 96 (97)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTC-CSCCCCC-CC-CGGGHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhcccCCC-cCCCCcC-cC-CHHHHHHHHHHHhhhC
Confidence 68999999999999999 8765421 1224556 54 9999999999999998
No 9
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus}
Probab=97.47 E-value=5.7e-05 Score=53.64 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=42.0
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVE 74 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~e 74 (136)
|++++.++++.+++|+. .+-. ++.+.+.+|+.||++|+|+.|.+.|++.+...+.|+++.
T Consensus 65 l~~~~~~~f~~lL~fiYtg~~~--------------i~~~~v~~ll~~A~~l~i~~L~~~C~~~l~~~l~~~~~~ 125 (135)
T 2yy9_A 65 LPAGFAEIFGLLLDFFYTGHLA--------------LTSGNRDQVLLAAKELRVPEAVELCQSFQPQTSVGQAQS 125 (135)
T ss_dssp ECGGGHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHCCC---------
T ss_pred eCCCCHHHHHHHHHHHhCCCCC--------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccCCCCC
Confidence 46788888999999988 4321 244568999999999999999999999999998888764
No 10
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A
Probab=96.90 E-value=0.0024 Score=44.04 Aligned_cols=54 Identities=13% Similarity=0.097 Sum_probs=43.2
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHh
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRI 68 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~i 68 (136)
+++++.++++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|++.+.+.|
T Consensus 67 l~~~~~~~f~~ll~~~Ytg~~~--------------~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~~~I 121 (121)
T 1buo_A 67 LDFLSPKTFQQILEYAYTATLQ--------------AKAEDLDDLLYAAEILEIEYLEEQCLKMLETIQ 121 (121)
T ss_dssp ECSSCHHHHHHHHHHHHHSCCC--------------CCGGGHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred eCCCCHHHHHHHHHhhcCCCcC--------------CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhC
Confidence 46788888888888888 3221 144568999999999999999999999987654
No 11
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=96.78 E-value=0.0015 Score=45.50 Aligned_cols=53 Identities=9% Similarity=-0.054 Sum_probs=41.3
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN 66 (136)
Q Consensus 1 i~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~ 66 (136)
+++|+..+++.+++|+.... +. ++.+.+.+|+.||++|+|++|.+.|++++.+
T Consensus 65 l~~v~~~~f~~ll~fiYtg~------------~~-i~~~~v~~ll~aA~~l~i~~l~~~C~~~~~~ 117 (119)
T 3m5b_A 65 GEGISPSTFAQLLNFVYGES------------VE-LQPGELRPLQEAARALGVQSLEEACWRARGD 117 (119)
T ss_dssp CSSCCHHHHHHHHHHHTTCC------------EE-ECGGGHHHHHHHHHHTTCHHHHHHHHHHC--
T ss_pred eCCCCHHHHHHHHHHHcCCC------------cC-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHhh
Confidence 46788999999999987211 12 2566789999999999999999999998754
No 12
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=96.72 E-value=0.0035 Score=41.93 Aligned_cols=53 Identities=8% Similarity=-0.068 Sum_probs=41.4
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANR 67 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ 67 (136)
+++++..+++.+++|+. -.-. ++.+.+.+|+.||+++++++|.+.|.+.+.+.
T Consensus 55 l~~~~~~~f~~~l~~iYt~~~~--------------~~~~~~~~ll~~A~~~~~~~L~~~c~~~l~~~ 108 (109)
T 2vkp_A 55 IPDVEPAAFLILLKYMYSDEID--------------LEADTVLATLYAAKKYIVPALAKACVNFLETS 108 (109)
T ss_dssp ETTSCHHHHHHHHHHHHHCCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHcCCCcc--------------CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh
Confidence 35677888888888877 3221 24566889999999999999999999998764
No 13
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens}
Probab=96.69 E-value=0.0056 Score=43.90 Aligned_cols=63 Identities=6% Similarity=0.025 Sum_probs=47.9
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIR 77 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR 77 (136)
+++++..+++.+++|+. ..- . ++.+.+.+|+.+|+++++++|.+.|.+.+...+...+.-++.
T Consensus 78 l~~~~~~~f~~~l~~~Yt~~~-------------~-~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~~~~~ 141 (172)
T 3htm_A 78 INDVEPEVFKEMMCFIYTGKA-------------P-NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 141 (172)
T ss_dssp ECSSCHHHHHHHHHHHHHSCC-------------T-TGGGTHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTTHHHHH
T ss_pred ecCCCHHHHHHHHHHHhCCCC-------------C-CcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35677777777777776 321 1 145568899999999999999999999999887777766554
No 14
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=96.42 E-value=0.0089 Score=40.75 Aligned_cols=50 Identities=14% Similarity=0.070 Sum_probs=37.7
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL 64 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I 64 (136)
+++++..+++.+++|+. ..- . ++.+.+.+|+.||+++++++|.+.|.+.+
T Consensus 69 l~~~~~~~f~~ll~~~Yt~~~-------------~-~~~~~~~~ll~~A~~~~i~~L~~~C~~~L 119 (120)
T 2if5_A 69 IDFVSAEALTALMDFAYTATL-------------T-VSTANVGDILSAARLLEIPAVSHVCADLL 119 (120)
T ss_dssp CCSSCHHHHHHHHHHHHHSCC-------------C-CCGGGHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHcCCCC-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 35667777777777776 321 1 24567899999999999999999998765
No 15
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=96.38 E-value=0.008 Score=40.85 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=40.1
Q ss_pred CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340 2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA 65 (136)
Q Consensus 2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA 65 (136)
++++.++++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|++.+.
T Consensus 65 ~~~~~~~f~~ll~~~Yt~~~~--------------~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (116)
T 2vpk_A 65 SQVKADGFQKLLEFIYTGTLN--------------LDSWNVKEIHQAADYLKVEEVVTKCKIKME 115 (116)
T ss_dssp TTCCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHcCCCcc--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 3788899999999988 3221 144568899999999999999999998763
No 16
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A
Probab=96.37 E-value=0.0045 Score=42.54 Aligned_cols=50 Identities=12% Similarity=0.133 Sum_probs=39.0
Q ss_pred CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340 2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA 65 (136)
Q Consensus 2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA 65 (136)
++++.++++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|++.++
T Consensus 67 ~~~~~~~f~~ll~~~Ytg~~~--------------i~~~~~~~ll~~A~~l~i~~L~~~C~~~l~ 117 (119)
T 2q81_A 67 DISNAAGLGQVLEFMYTAKLS--------------LSPENVDDVLAVATFLQMQDIITACHALKS 117 (119)
T ss_dssp GGCCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHcCCCCc--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 4567788888888877 3221 244568899999999999999999998874
No 17
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B
Probab=96.34 E-value=0.0085 Score=46.06 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=34.8
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCC
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKS 72 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt 72 (136)
+++|+..+++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|++.+...+.-.+
T Consensus 77 l~~v~~~~f~~ll~~~Yt~~~~--------------i~~~~v~~ll~~A~~l~i~~l~~~c~~~L~~~l~~~n 135 (256)
T 3hve_A 77 LEGISVMVMREILDYIFSGQIR--------------LNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAEN 135 (256)
T ss_dssp CSSCCHHHHHHHHHHHHHSCCC--------------CC-CCHHHHHHHHHHHTCHHHHHHHHHHHHHTCCSST
T ss_pred eCCCCHHHHHHHHhhccCCCCc--------------ccHhHHHHHHHHHHHHChHHHHHHHHHHHHhhCCHhh
Confidence 46788888888888887 3321 1233455566666666666666666665555444333
No 18
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens}
Probab=96.32 E-value=0.0033 Score=43.89 Aligned_cols=59 Identities=5% Similarity=0.036 Sum_probs=39.3
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSV 73 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~ 73 (136)
+++++..+++.+++|+. ..-. ++.+.+.+|+.+|+++++++|.+.|++.+...+...+.
T Consensus 69 l~~~~~~~~~~~l~~~Y~~~~~--------------~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~n~ 128 (145)
T 4eoz_A 69 INDVEPEVFKEMMCFIYTGKAP--------------NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENA 128 (145)
T ss_dssp ECSSCHHHHHHHHHHHHHSCCT--------------TGGGTHHHHHHHHHHTTCHHHHHHHHCC----------
T ss_pred ecCCCHHHHHHHHHhhccCccC--------------CcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCHHHH
Confidence 46788888888888887 4321 13456789999999999999999999998876654443
No 19
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=96.29 E-value=0.0089 Score=41.24 Aligned_cols=50 Identities=8% Similarity=0.008 Sum_probs=40.4
Q ss_pred CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340 2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA 65 (136)
Q Consensus 2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA 65 (136)
++++..+++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|.+.+.
T Consensus 74 ~~~~~~~f~~ll~~~Ytg~~~--------------~~~~~~~~ll~~A~~~~i~~L~~~c~~~l~ 124 (127)
T 1r29_A 74 PEINPEGFNILLDFMYTSRLN--------------LREGNIMAVMATAMYLQMEHVVDTCRKFIK 124 (127)
T ss_dssp TTSCHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCCcC--------------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 6788888888888887 3221 145668899999999999999999998875
No 20
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens}
Probab=96.12 E-value=0.0042 Score=42.70 Aligned_cols=51 Identities=10% Similarity=0.058 Sum_probs=39.1
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLA 65 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA 65 (136)
+++++.++++.+++|+. -.-. ++.+.+.+|+.||++|++++|.+.|++.+.
T Consensus 64 l~~~~~~~f~~ll~~iYtg~~~--------------~~~~~v~~ll~~A~~~~i~~L~~~C~~~l~ 115 (119)
T 3b84_A 64 LPAGFAEIFGLLLDFFYTGHLA--------------LTSGNRDQVLLAARELRVPEAVELCQSFKP 115 (119)
T ss_dssp ECGGGHHHHHHHHHHHHHSCCC--------------CCTTTHHHHHHHHHHTTCHHHHHHHHHCC-
T ss_pred eCCCCHHHHHHHHHHHcCCCCc--------------cCHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 36778888888888887 3221 134557899999999999999999998764
No 21
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus}
Probab=96.03 E-value=0.006 Score=42.95 Aligned_cols=54 Identities=9% Similarity=0.033 Sum_probs=41.5
Q ss_pred CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcC
Q 045340 3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKN 70 (136)
Q Consensus 3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikg 70 (136)
+|+...++.+++|+. -.- . ++.+.+.+|+.||++|++++|.+.|++.+...+..
T Consensus 81 ~v~~~~~~~lL~~~Ytg~~-------------~-i~~~~v~~ll~~A~~~~i~~L~~~C~~~l~~~l~~ 135 (138)
T 2z8h_A 81 EVTVKGFEPLIQFAYTAKL-------------I-LSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKFLD 135 (138)
T ss_dssp TSCHHHHHHHHHHHHHSCC-------------C-CCTTTHHHHHHHHHHHTCGGGHHHHHHHTTCCCSC
T ss_pred CCCHHHHHHHHHHhcCCCc-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccc
Confidence 677777777887777 321 1 24556899999999999999999999988766543
No 22
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens}
Probab=95.90 E-value=0.0091 Score=42.60 Aligned_cols=50 Identities=12% Similarity=0.100 Sum_probs=38.2
Q ss_pred CCCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL 64 (136)
Q Consensus 1 i~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I 64 (136)
+++++..+++.+++|+. -.- . ++.+.+.+|+.||++|++++|.+.|++.+
T Consensus 93 l~~v~~~~f~~lL~fiYtg~~-------------~-i~~~~v~~ll~~A~~l~i~~L~~~C~~~L 143 (144)
T 2ppi_A 93 LEGISVMVMREILDYIFSGQI-------------R-LNEDTIQDVVQAADLLLLTDLKTLCCEFL 143 (144)
T ss_dssp CCSSCHHHHHHHHHHHTTSCC-------------C-CCTTTHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred eCCCCHHHHHHHHHHHhCCCC-------------C-CCHHHHHHHHHHHHHhCcHHHHHHHHHHh
Confidence 46677788888888876 221 1 24567899999999999999999998653
No 23
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A
Probab=95.61 E-value=0.019 Score=44.65 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=42.5
Q ss_pred CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHH
Q 045340 3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYI 76 (136)
Q Consensus 3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEI 76 (136)
+|+..+++.+++|+. ..- . ++.+.+.+|+.||++|++++|.+.|++.+...+...+.-.+
T Consensus 87 ~v~~~~f~~ll~~~Ytg~~-------------~-i~~~~v~~ll~~A~~l~i~~L~~~c~~~L~~~l~~~n~~~i 147 (279)
T 3i3n_A 87 GPEPDTVEAVIEYMYTGRI-------------R-VSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAI 147 (279)
T ss_dssp CSCHHHHHHHHHHHHHSEE-------------E-EETTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTTHHHH
T ss_pred CCCHHHHHHHHHhhCcCCc-------------c-cCHHHHHHHHHHHHHHCcHHHHHHHHHHHHHcCCcchHHHH
Confidence 788899999999987 321 1 13445777888888888888888888777776666555444
No 24
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A
Probab=95.07 E-value=0.049 Score=42.84 Aligned_cols=62 Identities=6% Similarity=0.012 Sum_probs=43.6
Q ss_pred CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 045340 2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIR 77 (136)
Q Consensus 2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR 77 (136)
++++..+++.+++|+. ..- . ++.+.+.+|+.||+++++++|...|.+.+...+...+.-++-
T Consensus 219 ~~~~~~~f~~~L~~iYt~~~-------------~-~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l 281 (312)
T 3hqi_A 219 NDVEPEVFKEMMCFIYTGKA-------------P-NLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEIL 281 (312)
T ss_dssp CSSCHHHHHHHHHHHHHSCC-------------T-THHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHH
T ss_pred cCCCHHHHHHHHHhhcCCCC-------------C-ChHHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4555555666666555 221 1 134678999999999999999999999998777666665543
No 25
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=94.86 E-value=0.0054 Score=42.65 Aligned_cols=50 Identities=14% Similarity=0.132 Sum_probs=34.6
Q ss_pred CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340 3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETLAN 66 (136)
Q Consensus 3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~ 66 (136)
+++.++++.+++|+. ..- . ++.+.+.+|+.||++|++++|.+.|++.+..
T Consensus 76 ~~~~~~f~~ll~~iYtg~~-------------~-i~~~~~~~ll~~A~~~~i~~l~~~C~~~L~~ 126 (129)
T 3ga1_A 76 AVQPQSFQQILSFCYTGRL-------------S-MNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126 (129)
T ss_dssp TCCHHHHHHHHHHHHHSEE-------------E-CCTTTHHHHHHHHHHTTBTTSSCC-------
T ss_pred CCCHHHHHHHHHHHhCCcc-------------c-cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 788888888888887 321 1 2455688999999999999999999988753
No 26
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=93.27 E-value=0.11 Score=35.45 Aligned_cols=46 Identities=11% Similarity=0.044 Sum_probs=34.9
Q ss_pred CCCCcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHH
Q 045340 1 MDNNYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLD 58 (136)
Q Consensus 1 i~nV~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~ 58 (136)
+++++..+++.+++|+....-+ . ++.+.+.+|+.||++|+|++|.+
T Consensus 70 l~~~~~~~f~~~l~~~Ytg~~~-----------~-~~~~~~~~ll~~A~~l~i~~L~~ 115 (116)
T 3fkc_A 70 LSFIRAEIFAEILNYIYSSKIV-----------R-VRSDLLDELIKSGQLLGVKFIAA 115 (116)
T ss_dssp ECSSCHHHHHHHHHHHTTSCCC-----------S-CCHHHHHHHHHHHHHHTCHHHHT
T ss_pred eCCCCHHHHHHHHHhhcCCCcC-----------C-CCHHHHHHHHHHHHHhCccccCc
Confidence 4678889999999998721110 1 25677889999999999999865
No 27
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A
Probab=93.07 E-value=0.0054 Score=42.24 Aligned_cols=48 Identities=13% Similarity=0.081 Sum_probs=34.9
Q ss_pred CC-CcHHHHHHHHHhhcCCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHH
Q 045340 2 DN-NYSRWKSKGVRDCDHSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTE 62 (136)
Q Consensus 2 ~n-V~s~~L~kViewC~H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~ 62 (136)
++ ++..+++.+++|+.... +. ++.+.+.+|+.||++|++++|.+.|++
T Consensus 75 ~~~~~~~~f~~~l~~iYtg~------------~~-~~~~~v~~ll~~A~~l~i~~L~~~C~~ 123 (125)
T 3ohu_A 75 PEEVTARGFGPLLQFAYTAK------------LL-LSRENIREVIRCAEFLRMHNLEDSCFS 123 (125)
T ss_dssp CTTCCHHHHHHHHHHHTTSE------------EE-ECTTTHHHHHHHHHHHTBSSCTTSSCC
T ss_pred CCCCCHHHHHHHHHhHcCCc------------eE-ECHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44 77777777777776211 11 255678999999999999999887764
No 28
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens}
Probab=90.54 E-value=0.022 Score=39.30 Aligned_cols=48 Identities=8% Similarity=0.021 Sum_probs=34.9
Q ss_pred CCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHHHHHH
Q 045340 3 NNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYLTETL 64 (136)
Q Consensus 3 nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~I 64 (136)
+|+.+.++.+++|+. -.- . ++.+.+.+|+.||++|++++|.+.|++.+
T Consensus 74 ~v~~~~f~~lL~~iYtg~~-------------~-i~~~~v~~ll~~A~~~~~~~L~~~C~~~l 122 (124)
T 2ihc_A 74 EVTVKGFEPLIQFAYTAKL-------------I-LSKENVDEVCKCVEFLSVHNIEESCFQFL 122 (124)
T ss_dssp TSCHHHHHHHHHHHHHSEE-------------E-EETTTHHHHHHHHHHHTBSSCCGGGGGTC
T ss_pred CcCHHHHHHHHHHhcCCCc-------------c-cCHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 566666666666665 211 1 24566899999999999999999887654
No 29
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=73.23 E-value=4.3 Score=27.26 Aligned_cols=36 Identities=11% Similarity=0.216 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------CC-CCCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------IE-NNFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I~-~D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.+.|+.+. |. ..+|+||.+.+.+
T Consensus 24 W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~ 66 (107)
T 2k9n_A 24 WIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQ 66 (107)
T ss_dssp HHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHH
T ss_pred HHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 467899999999999999863 33 3699999887654
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=70.72 E-value=3.7 Score=27.32 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.8
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------C-CCCCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------I-ENNFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I-~~D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.+.|+.+. + ...+|+||.+.+.+
T Consensus 27 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 69 (105)
T 1gv2_A 27 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 69 (105)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHH
T ss_pred HHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHH
Confidence 568999999999999999874 2 23689999887754
No 31
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=68.08 E-value=3.4 Score=26.79 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+-|||++|+++.|.
T Consensus 34 We~IA~~V~gKT~eE~~~hY~ 54 (73)
T 1wgx_A 34 WSEVAAAVGSRSPEECQRKYM 54 (73)
T ss_dssp HHHHHHHTTTSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 478999999999999998764
No 32
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=67.88 E-value=21 Score=22.83 Aligned_cols=76 Identities=16% Similarity=-0.088 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHH-----HHHHHHHHhcCCCHHHHHHH
Q 045340 6 SRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDY-----LTETLANRIKNKSVEYIRKF 79 (136)
Q Consensus 6 s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l-----~c~~IA~~ikgKt~eEIR~~ 79 (136)
+..+.+|.+|.+ |-.+++.+.+++++-+.+ +...|..+.....-+.....+.. +++.+.. .+.|..||-..
T Consensus 1 s~~~~~i~~~i~~~~~~~~~~~~~lA~~~~~-S~~~l~r~fk~~~g~s~~~~~~~~Rl~~A~~lL~~--~~~si~~iA~~ 77 (103)
T 3lsg_A 1 SNAKELIQNIIEESYTDSQFTLSVLSEKLDL-SSGYLSIMFKKNFGIPFQDYLLQKRMEKAKLLLLT--TELKNYEIAEQ 77 (103)
T ss_dssp CHHHHHHHHHHHHHTTCTTCCHHHHHHHTTC-CHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred ChHHHHHHHHHHHHccCCCCCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHC--CCCCHHHHHHH
Confidence 357889999999 766544455566555565 77777777776633333333222 3333322 36888898888
Q ss_pred cCCCC
Q 045340 80 FRIEN 84 (136)
Q Consensus 80 fgI~~ 84 (136)
.|-.+
T Consensus 78 ~Gf~~ 82 (103)
T 3lsg_A 78 VGFED 82 (103)
T ss_dssp TTCSC
T ss_pred hCCCC
Confidence 88653
No 33
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=67.14 E-value=8.7 Score=26.45 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.7
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------CC-CCCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------IE-NNFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I~-~D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.++|+.+. +. ..+|+||.+.+.+
T Consensus 50 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 92 (128)
T 1h8a_C 50 WSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 92 (128)
T ss_dssp HHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHHHHH
Confidence 578899999999999999874 32 3589999877654
No 34
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=66.40 E-value=1.2 Score=29.17 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=29.0
Q ss_pred ChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCC
Q 045340 37 SNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIE 83 (136)
Q Consensus 37 d~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~ 83 (136)
..+.+|+-..|..--+-+.- -..||..+-|||++|+++.+.++
T Consensus 26 eE~K~FE~ALa~yp~~tpdR----WekIA~~VpGKT~eEVk~hY~~~ 68 (74)
T 4eef_G 26 SENIAFEIALSFTNKDTPDR----WKKVAQYVKGRTPEEVKKHYELE 68 (74)
T ss_dssp THHHHHHHHTSSSCSSCCSS----STTTGGGSCSSCHHHHHGGGC--
T ss_pred HHHHHHHHHHHHCCCCCCcH----HHHHHHHcCCCCHHHHHHHHHHh
Confidence 35566776666654333322 26788899999999999998875
No 35
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=63.99 E-value=4.8 Score=25.76 Aligned_cols=20 Identities=20% Similarity=0.263 Sum_probs=16.3
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+ |||++|+++.+.
T Consensus 34 W~~IA~~l-gRt~~eV~~~y~ 53 (72)
T 2cqq_A 34 WEKIAHEL-GRSVTDVTTKAK 53 (72)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 46788877 999999998764
No 36
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=63.47 E-value=7.6 Score=33.26 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=35.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHH-HHHhhhhchhhhcccc
Q 045340 60 LTETLANRIKNKSVEYIRKFFRIENNFMPEEE-EAARNDSTKISCIFLS 107 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~fgI~~D~T~EEe-e~ir~en~w~~~~~~~ 107 (136)
+-.-|..+|..||||||-+.+|+++|...-.| .+-..+..|-....+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~k~~a~~~~~~~p~nv 212 (505)
T 3few_X 164 AKAGIMEKINHKTPEEIYEALGFNKDESQRQEKAKQQAEDAWDRLPPNV 212 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHTTTTTTHHHHHHHHHHHHHHHHHTSGGGC
T ss_pred hhhhHHHHhcCCCHHHHHHHhCCCccchHHHHHHHHHHHHhhhhCCCch
Confidence 44557788999999999999999999765433 3445566776665554
No 37
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=60.19 E-value=12 Score=25.79 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------CCC-CCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------IEN-NFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I~~-D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.+.|+.+. +.. .+|+||.+.+.+
T Consensus 33 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 75 (126)
T 3osg_A 33 WKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQ 75 (126)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHH
Confidence 688999999999999999864 333 599999887644
No 38
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=58.63 E-value=5.6 Score=27.66 Aligned_cols=36 Identities=19% Similarity=0.305 Sum_probs=28.4
Q ss_pred HHHHHHHhcCCCHHHHHHHc------CCCC-CCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFF------RIEN-NFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~f------gI~~-D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.+.|+.+ ++.. .+|+||.+.+.+
T Consensus 25 W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 67 (131)
T 3zqc_A 25 WPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFR 67 (131)
T ss_dssp GGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHH
Confidence 45788888999999999987 4443 599999887644
No 39
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.53 E-value=7.7 Score=23.40 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|+.|+|+.+.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~r~~ 51 (60)
T 1x41_A 31 WQDVANQMCTKTKEECEKHYM 51 (60)
T ss_dssp HHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHH
Confidence 578899999999999998764
No 40
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=53.99 E-value=9.2 Score=26.09 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.5
Q ss_pred HHHHHHhcCCCHHHHHHHcC
Q 045340 62 ETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 62 ~~IA~~ikgKt~eEIR~~fg 81 (136)
..||.++.+||++|++..|.
T Consensus 59 a~iA~~L~Nks~nqV~~RFq 78 (95)
T 1ug2_A 59 SVISQQLGNKTPVEVSHRFR 78 (95)
T ss_dssp HHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHccCCHHHHHHHHH
Confidence 45899999999999999884
No 41
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=53.80 E-value=10 Score=24.54 Aligned_cols=39 Identities=8% Similarity=0.044 Sum_probs=27.1
Q ss_pred ChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcC
Q 045340 37 SNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 37 d~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fg 81 (136)
..++-.-|+.|-.-.+ ---..||..+.|+|+.|+|..|.
T Consensus 22 T~eEd~~Ll~~v~~~G------~~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 22 TEQETLLLLEALEMYK------DDWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CHHHHHHHHHHHHHSS------SCHHHHHHHHSSCCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhC------CCHHHHHHHcCCCCHHHHHHHHH
Confidence 3444444455544444 24688999999999999999886
No 42
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.57 E-value=8.6 Score=23.40 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=17.0
Q ss_pred HHHHHHhcCCCHHHHHHHcC
Q 045340 62 ETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 62 ~~IA~~ikgKt~eEIR~~fg 81 (136)
..||.++.|||+.++++++-
T Consensus 35 ~~Ia~~l~~rt~~~~v~~Yy 54 (61)
T 2eqr_A 35 GLIASYLERKSVPDCVLYYY 54 (61)
T ss_dssp HHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHH
Confidence 67788999999999998763
No 43
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=53.38 E-value=8.4 Score=25.87 Aligned_cols=21 Identities=14% Similarity=0.371 Sum_probs=19.3
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+-|||++|+|..|.
T Consensus 34 W~~IA~~vpGRT~~q~k~ry~ 54 (93)
T 2cjj_A 34 WANVARAVEGRTPEEVKKHYE 54 (93)
T ss_dssp HHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578999999999999999987
No 44
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=52.21 E-value=5.7 Score=25.50 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHcC
Q 045340 60 LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~fg 81 (136)
--..||..+-|+|+.|+|..|.
T Consensus 43 rW~~IA~~vpGRT~~qcr~Ry~ 64 (73)
T 2cqr_A 43 CWDKIARCVPSKSKEDCIARYK 64 (73)
T ss_dssp HHHHHGGGCSSSCHHHHHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHH
Confidence 4678999999999999998875
No 45
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=51.75 E-value=7.9 Score=26.67 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=10.3
Q ss_pred HHHHhcCCCHHHHHHHcC------C-CCCCCHHHHHHHhh
Q 045340 64 LANRIKNKSVEYIRKFFR------I-ENNFMPEEEEAARN 96 (136)
Q Consensus 64 IA~~ikgKt~eEIR~~fg------I-~~D~T~EEee~ir~ 96 (136)
||..+.|+|+.+.|+.+. + ...+|+||.+.+.+
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~ 40 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIE 40 (128)
T ss_dssp ---------------------CTTCCCSCCCHHHHHHHHH
T ss_pred CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHH
Confidence 678889999999998874 1 23599999887754
No 46
>3few_X Colicin S4; cell lysis, Y-RAY, cell killing, immune system; 2.45A {Escherichia coli}
Probab=51.55 E-value=15 Score=31.53 Aligned_cols=42 Identities=10% Similarity=0.097 Sum_probs=31.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHcCCCCCCCH-HHHHHHhhhhchh
Q 045340 60 LTETLANRIKNKSVEYIRKFFRIENNFMP-EEEEAARNDSTKI 101 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~fgI~~D~T~-EEee~ir~en~w~ 101 (136)
+-.-|.+++..||||||-+-+|+.+|.+. ++.++....+.|-
T Consensus 251 akagim~k~~hktpeeiyealgfn~de~qrq~~ak~~a~d~~~ 293 (505)
T 3few_X 251 AKAGIMDKVDHKTPEEIYEALGFNNEEPQRQNQAKKAAYDVFY 293 (505)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHTTTTTHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHhhccCCHHHHHHHhCCCccchHHHHHHHHHHHHHHH
Confidence 44556778999999999999999998743 3445555566664
No 47
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=50.62 E-value=16 Score=26.03 Aligned_cols=36 Identities=14% Similarity=0.265 Sum_probs=28.6
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------CC-CCCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------IE-NNFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I~-~D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.++|..+. +. ..+|+||.+.+.+
T Consensus 81 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~ 123 (159)
T 1h89_C 81 WSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQ 123 (159)
T ss_dssp HHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHHHH
Confidence 567899999999999999874 33 3589998877654
No 48
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=49.99 E-value=16 Score=25.89 Aligned_cols=37 Identities=11% Similarity=0.115 Sum_probs=24.1
Q ss_pred HHhhhhhchHHHHHHHH-HHHHHHhcCCCHHHHHHHcC
Q 045340 45 LLVANYLNITEMLDYLT-ETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 45 i~AAnyL~I~~Ll~l~c-~~IA~~ikgKt~eEIR~~fg 81 (136)
|..+.|-.-=.-+-.++ ..++.+++|||.+|.+++.+
T Consensus 54 I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (138)
T 2qq4_A 54 IADIRFQGQGCAISTASASLMTEAVKGKKVAEALELSR 91 (138)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 44444444443344444 55688999999999998764
No 49
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=49.96 E-value=11 Score=25.44 Aligned_cols=19 Identities=16% Similarity=0.281 Sum_probs=13.8
Q ss_pred HHHHHHhc-CCCHHHHHHHc
Q 045340 62 ETLANRIK-NKSVEYIRKFF 80 (136)
Q Consensus 62 ~~IA~~ik-gKt~eEIR~~f 80 (136)
..|..+++ |||.+||+++|
T Consensus 47 ~~Vre~l~~G~Sd~eI~~~m 66 (90)
T 2kw0_A 47 QKVYELMQEGKSKKEIVDYM 66 (90)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34445555 99999999876
No 50
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=49.38 E-value=11 Score=24.95 Aligned_cols=19 Identities=16% Similarity=0.293 Sum_probs=13.8
Q ss_pred HHHHHHhc-CCCHHHHHHHc
Q 045340 62 ETLANRIK-NKSVEYIRKFF 80 (136)
Q Consensus 62 ~~IA~~ik-gKt~eEIR~~f 80 (136)
..|-.+++ |||.+||+++|
T Consensus 50 ~~V~~~l~~G~sd~eI~~~~ 69 (84)
T 2hl7_A 50 KQIYGQLQQGKSDGEIVDYM 69 (84)
T ss_dssp HHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 34445555 99999999876
No 51
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=49.02 E-value=15 Score=25.77 Aligned_cols=38 Identities=11% Similarity=0.060 Sum_probs=24.9
Q ss_pred HHHhhhhhchHHHHHH-HHHHHHHHhcCCCHHHHHHHcC
Q 045340 44 MLLVANYLNITEMLDY-LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 44 Li~AAnyL~I~~Ll~l-~c~~IA~~ikgKt~eEIR~~fg 81 (136)
.|..+.|-.-=.-+-. ++..++++++|||.+|.+++.+
T Consensus 53 ~I~d~~f~~~GCais~ASaS~~te~i~Gkt~~ea~~i~~ 91 (129)
T 3lvl_A 53 IIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKN 91 (129)
T ss_dssp CEEEEEEEEESCHHHHHHHHHHHHHHTTCCHHHHHTCCH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 3455555444433333 4456688999999999998754
No 52
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.96 E-value=12 Score=23.29 Aligned_cols=21 Identities=10% Similarity=0.213 Sum_probs=18.6
Q ss_pred HHHHHHHHhcCCCHHHHHHHc
Q 045340 60 LTETLANRIKNKSVEYIRKFF 80 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~f 80 (136)
--..||..+.|+|+.|+|..+
T Consensus 35 ~W~~IA~~~~~Rt~~qcr~r~ 55 (75)
T 2yum_A 35 RWQKIADELGNRTAKQVASQV 55 (75)
T ss_dssp HHHHHHHHHSSSCHHHHHHHH
T ss_pred cHHHHHHHhCCCCHHHHHHHH
Confidence 367899999999999999887
No 53
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=48.78 E-value=14 Score=22.17 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=17.6
Q ss_pred HHHHHHHhc-CCCHHHHHHHc
Q 045340 61 TETLANRIK-NKSVEYIRKFF 80 (136)
Q Consensus 61 c~~IA~~ik-gKt~eEIR~~f 80 (136)
-..||..+. |+|+.|.|+.+
T Consensus 32 W~~IA~~~~~~Rt~~qcr~r~ 52 (58)
T 2elk_A 32 WADIADYVGNARTKEECRDHY 52 (58)
T ss_dssp HHHHHHHHCSSCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCHHHHHHHH
Confidence 578899999 99999999865
No 54
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=47.33 E-value=18 Score=25.88 Aligned_cols=38 Identities=13% Similarity=0.156 Sum_probs=25.4
Q ss_pred HHHhhhhhchHHHHHHHH-HHHHHHhcCCCHHHHHHHcC
Q 045340 44 MLLVANYLNITEMLDYLT-ETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 44 Li~AAnyL~I~~Ll~l~c-~~IA~~ikgKt~eEIR~~fg 81 (136)
.|..+.|-.-=.-+-.++ ..++.+++|||.+|.+++.+
T Consensus 55 ~I~d~~f~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 93 (147)
T 1xjs_A 55 IVEDAKFEGEGCSISMASASMMTQAIKGKDIETALSMSK 93 (147)
T ss_dssp BCCEEEEEEESSHHHHHHHHHHHHHHTTSBHHHHHHHHH
T ss_pred eEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 455555555444444444 45688999999999998764
No 55
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=45.81 E-value=7 Score=20.57 Aligned_cols=12 Identities=33% Similarity=0.659 Sum_probs=9.6
Q ss_pred HHHHHHhhhhhc
Q 045340 41 LKEMLLVANYLN 52 (136)
Q Consensus 41 L~~Li~AAnyL~ 52 (136)
+--|+.||+||+
T Consensus 5 vq~LLeAAeyLE 16 (26)
T 1pd7_B 5 IQMLLEAADYLE 16 (26)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 446889999997
No 56
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=44.20 E-value=24 Score=25.59 Aligned_cols=38 Identities=8% Similarity=-0.000 Sum_probs=25.1
Q ss_pred HHHhhhhhchHHHHHHHH-HHHHHHhcCCCHHHHHHHcC
Q 045340 44 MLLVANYLNITEMLDYLT-ETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 44 Li~AAnyL~I~~Ll~l~c-~~IA~~ikgKt~eEIR~~fg 81 (136)
.|..+.|-.-=.-+-.++ ..++.+++|||.+|.+++.+
T Consensus 54 ~I~d~~F~~~GCais~ASaS~mte~v~Gkt~~Ea~~i~~ 92 (159)
T 1su0_B 54 KIEDIAFAGNGCTISTASSSMMTDAVIGKSKEEALALAD 92 (159)
T ss_dssp SEEEEEEEEECCHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred EEEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 344455544444444444 45688999999999998865
No 57
>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}
Probab=43.54 E-value=10 Score=25.46 Aligned_cols=19 Identities=11% Similarity=0.193 Sum_probs=17.2
Q ss_pred cCCCHHHHHHHcCCCCCCC
Q 045340 69 KNKSVEYIRKFFRIENNFM 87 (136)
Q Consensus 69 kgKt~eEIR~~fgI~~D~T 87 (136)
-|.||+|=|+.||++.|+.
T Consensus 42 hgltpeeYR~kwGlp~dyP 60 (87)
T 2jsp_A 42 HSMTPEEYREKWDLPVDYP 60 (87)
T ss_dssp TCSCHHHHHHHTTCGGGCC
T ss_pred cCCCHHHHHHHhCCCCCCc
Confidence 3999999999999999964
No 58
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=43.18 E-value=9.5 Score=27.19 Aligned_cols=36 Identities=14% Similarity=0.251 Sum_probs=16.1
Q ss_pred HHHHHHHhcCCCHHHHHHHcC------C-CCCCCHHHHHHHhh
Q 045340 61 TETLANRIKNKSVEYIRKFFR------I-ENNFMPEEEEAARN 96 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg------I-~~D~T~EEee~ir~ 96 (136)
-..||..+.|+|+.+.|+.+. + ...+|+||.+.+.+
T Consensus 29 W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~ 71 (159)
T 1h89_C 29 WKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIK 71 (159)
T ss_dssp --------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHH
Confidence 568888999999999998763 2 34699999887754
No 59
>3g5o_A Uncharacterized protein RV2865; heterotetramer, 1:1 ratio, structural genomics, PSI-2, prote structure initiative; 2.00A {Mycobacterium tuberculosis}
Probab=40.75 E-value=56 Score=21.92 Aligned_cols=48 Identities=17% Similarity=0.219 Sum_probs=37.9
Q ss_pred ChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCC--CHHHHHHHcCCCC
Q 045340 37 SNDELKEMLLVANYLNITEMLDYLTETLANRIKNK--SVEYIRKFFRIEN 84 (136)
Q Consensus 37 d~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgK--t~eEIR~~fgI~~ 84 (136)
+.+..-.|......|..+.+.....+.+++.-.|+ |.+|+++.+|+..
T Consensus 48 s~e~ye~l~etl~LL~~~~~~~~L~~a~~~~~~G~~~s~eev~~~lgl~~ 97 (108)
T 3g5o_A 48 GADEWESLQETLYWLAQPGIRESIAEADADIASGRTYGEDEIRAEFGVPR 97 (108)
T ss_dssp EHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHTCEECHHHHHHHHTCCC
T ss_pred cHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHcCCCcCHHHHHHHhCCCc
Confidence 55555566666777888888888888888877775 8999999999864
No 60
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=40.30 E-value=8.6 Score=30.63 Aligned_cols=36 Identities=8% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Q 045340 42 KEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM 87 (136)
Q Consensus 42 ~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T 87 (136)
..|+.||..+|+-.. .+.|-.++++|+.|||+.++.
T Consensus 246 ~nl~LaA~~~GLgs~----------~~~~~~~~~v~~~L~lP~~~~ 281 (322)
T 4eo3_A 246 GNLLVQATQMGLVAH----------PVAGYDPVKVKEILKIPEDHV 281 (322)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHHTCCTTSE
T ss_pred HHHHHHHHHcCcCEE----------EcCccCHHHHHHHcCcCCCCE
Confidence 456666666666431 456778999999999998764
No 61
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=39.93 E-value=17 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.184 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|+.++|..+.
T Consensus 26 W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1guu_A 26 WKVIANYLPNRTDVQCQHRWQ 46 (52)
T ss_dssp HHHHHHTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999999998763
No 62
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=39.33 E-value=18 Score=26.37 Aligned_cols=37 Identities=11% Similarity=0.152 Sum_probs=23.7
Q ss_pred HHhhhhhchHHHHHH-HHHHHHHHhcCCCHHHHHHHcC
Q 045340 45 LLVANYLNITEMLDY-LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 45 i~AAnyL~I~~Ll~l-~c~~IA~~ikgKt~eEIR~~fg 81 (136)
|..+.|-.-=.-+-. ++..++.+++|||.+|.+++.+
T Consensus 53 I~d~~F~~~GCais~ASaS~mte~v~Gkt~~EA~~i~~ 90 (157)
T 2z7e_A 53 IEDVRFKTFGCGSAIAVSSMLTEMVKGKPIQYALNLTY 90 (157)
T ss_dssp EEEEEEEEESCTTHHHHHHHHHHHHTTSBHHHHHHCCH
T ss_pred EEEEEEEecCCHHHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 444444443333333 3455688999999999998765
No 63
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=38.57 E-value=81 Score=20.58 Aligned_cols=79 Identities=10% Similarity=-0.045 Sum_probs=41.6
Q ss_pred CCCcHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhhhhchHHHHHHH-HHHHHHHhc--CCCHHHHH
Q 045340 2 DNNYSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVANYLNITEMLDYL-TETLANRIK--NKSVEYIR 77 (136)
Q Consensus 2 ~nV~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAnyL~I~~Ll~l~-c~~IA~~ik--gKt~eEIR 77 (136)
+++....+.+|++|.. |...+ .+.+++++-+.+ +...|..+.... -+.....+... .+....++. +.|..+|-
T Consensus 2 ~~~~~~~~~~~~~~i~~~~~~~-~~~~~lA~~~~~-S~~~l~r~fk~~-G~s~~~~~~~~Rl~~A~~lL~~~~~si~eIA 78 (120)
T 3mkl_A 2 NALQPNMRTRVCTVINNNIAHE-WTLARIASELLM-SPSLLKKKLREE-ETSYSQLLTECRMQRALQLIVIHGFSIKRVA 78 (120)
T ss_dssp ---CCCHHHHHHHHHHTSTTSC-CCHHHHHHHTTC-CHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHHHTSTTCCHHHHH
T ss_pred CcccHHHHHHHHHHHHHhccCC-CCHHHHHHHHCc-CHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHcCCCCHHHHH
Confidence 3556778999999999 86553 244455444454 666666666543 22332222221 122222332 56777776
Q ss_pred HHcCCC
Q 045340 78 KFFRIE 83 (136)
Q Consensus 78 ~~fgI~ 83 (136)
...|-.
T Consensus 79 ~~~Gf~ 84 (120)
T 3mkl_A 79 VSCGYH 84 (120)
T ss_dssp HHTTCS
T ss_pred HHHCCC
Confidence 666654
No 64
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=37.63 E-value=24 Score=21.86 Aligned_cols=21 Identities=14% Similarity=0.308 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|..++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~q~k~r~~ 51 (72)
T 2cu7_A 31 WTKISKLIGSRTVLQVKSYAR 51 (72)
T ss_dssp HHHHHHHHSSSCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999999998764
No 65
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=37.58 E-value=26 Score=23.37 Aligned_cols=26 Identities=19% Similarity=0.402 Sum_probs=22.1
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHH
Q 045340 41 LKEMLLVANYLNITEMLDYLTETLAN 66 (136)
Q Consensus 41 L~~Li~AAnyL~I~~Ll~l~c~~IA~ 66 (136)
...+...|.|.+|.+|++.+-.+|..
T Consensus 81 ~~~l~~Ea~fy~l~~L~~~l~~~i~~ 106 (107)
T 3drz_A 81 EEGVLEEAEFYNITSLIKLVKDKIRE 106 (107)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 35788999999999999999887754
No 66
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=41.52 E-value=8 Score=25.02 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHcC
Q 045340 60 LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~fg 81 (136)
+-..||.++ ||||+|+...|.
T Consensus 38 tfa~iA~~L-nks~~QV~~RF~ 58 (70)
T 2lr8_A 38 TFAYLAAKL-DKNPNQVSERFQ 58 (70)
Confidence 456788888 999999988875
No 67
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=35.09 E-value=25 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.088 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|+.++|..+.
T Consensus 31 W~~Ia~~~~~Rt~~qcr~Rw~ 51 (60)
T 2d9a_A 31 WKFLASHFPNRTDQQCQYRWL 51 (60)
T ss_dssp HHHHHHHCSSSCHHHHHHHHH
T ss_pred HHHHHHHccCCCHHHHHHHHH
Confidence 578899999999999998774
No 68
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=34.48 E-value=21 Score=27.99 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=19.5
Q ss_pred CCHHHHHHHcCCCCCCCHHHHHHH
Q 045340 71 KSVEYIRKFFRIENNFMPEEEEAA 94 (136)
Q Consensus 71 Kt~eEIR~~fgI~~D~T~EEee~i 94 (136)
-||+|+|+..+...||.+|+..++
T Consensus 238 Ls~~E~r~il~lRvDf~~e~I~~l 261 (263)
T 3hr0_A 238 LTPAEVRQVLALRIDFRSEDIKRL 261 (263)
T ss_dssp SCHHHHHHHHTTBTTSCHHHHHHC
T ss_pred CCHHHHHHHHHhhccCCHHHHHhc
Confidence 688888888888888888876654
No 69
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=34.19 E-value=19 Score=20.76 Aligned_cols=21 Identities=14% Similarity=0.202 Sum_probs=18.1
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|..++|..+.
T Consensus 26 W~~Ia~~~~~Rt~~qcr~Rw~ 46 (52)
T 1gvd_A 26 WSVIAKHLKGRIGKQCRERWH 46 (52)
T ss_dssp HHHHHTTSTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999999998764
No 70
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=34.11 E-value=24 Score=25.64 Aligned_cols=37 Identities=14% Similarity=0.081 Sum_probs=23.3
Q ss_pred HHhhhhhchHHHHHH-HHHHHHHHhcCCCHHHHHHHcC
Q 045340 45 LLVANYLNITEMLDY-LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 45 i~AAnyL~I~~Ll~l-~c~~IA~~ikgKt~eEIR~~fg 81 (136)
|..+.|-.-=.-+-. ++..++.+++|||.+|.+++.+
T Consensus 48 I~D~~F~g~GCais~ASaS~mtelv~GKtleEA~~i~~ 85 (153)
T 4eb5_C 48 IEDIKFQTFGCAAAIATSSMATEMAKGKTIEEALKITR 85 (153)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHHHHTTCBHHHHTTCCH
T ss_pred EEEEEEEEeCcHHHHHHHHHHHHHHcCCCHHHHHHhhH
Confidence 444444444333333 4455688999999999986653
No 71
>3tnt_A SARS coronavirus main protease; 3C-like protease, hydrolase-hydrolase inhibitor CO; HET: G85; 1.59A {Sars coronavirus} PDB: 1uk2_A 1uk3_A 1uk4_A 1z1i_A 2a5a_A 1uj1_A* 2bx3_A 2bx4_A 2c3s_A 2a5i_A 2gt7_A* 2gx4_A* 2gz7_A* 2gz8_A* 2gz9_A 2duc_A 2hob_A* 2v6n_A* 2z3c_A* 2z3d_A* ...
Probab=33.74 E-value=27 Score=28.34 Aligned_cols=49 Identities=20% Similarity=0.276 Sum_probs=39.6
Q ss_pred HHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCCHHHH
Q 045340 40 ELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFMPEEE 91 (136)
Q Consensus 40 ~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T~EEe 91 (136)
..++.+.|..=.++..|+...-+.+++-..||+ |--....+++|||+|-
T Consensus 248 ~~~~~Laa~TGVsVe~lL~aI~~ll~~g~~G~~---IlG~~~leDE~Tp~~V 296 (306)
T 3tnt_A 248 DILGPLSAQTGIAVLDMCAALKELLQNGMNGRT---ILGSTILEDEFTPFDV 296 (306)
T ss_dssp HHTHHHHHHHTCCHHHHHHHHHHHHHHCCTTCC---BTTBSSCCCSCCHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCcCCce---eeccccccccCCHHHH
Confidence 358889999999999999977776777678887 5555668889999865
No 72
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=33.70 E-value=95 Score=19.94 Aligned_cols=75 Identities=12% Similarity=0.057 Sum_probs=42.6
Q ss_pred cHHHHHHHHHhhc-CCCCCCCCchHHHhhccCCChhHHHHHHHhhh------hhchHHHHHHHHHHHHHHhcCCCHHHHH
Q 045340 5 YSRWKSKGVRDCD-HSSTSDGTSEDMVEFGKGKSNDELKEMLLVAN------YLNITEMLDYLTETLANRIKNKSVEYIR 77 (136)
Q Consensus 5 ~s~~L~kViewC~-H~~~~~~~~~~l~~Fl~~ld~~~L~~Li~AAn------yL~I~~Ll~l~c~~IA~~ikgKt~eEIR 77 (136)
+...+.++++|.+ |-..+ .+.+++++-+.+ +...|..+..... |+.-..|- .+++.+.+ .+.|..||-
T Consensus 5 ~~~~i~~~~~~i~~~~~~~-~~~~~lA~~~~~-S~~~l~r~fk~~~G~s~~~~~~~~Rl~-~A~~lL~~--~~~~i~eIA 79 (113)
T 3oio_A 5 SQPKLTEAVSLMEANIEEP-LSTDDIAYYVGV-SRRQLERLFKQYLGTVPSKYYLELRLN-RARQLLQQ--TSKSIVQIG 79 (113)
T ss_dssp GCHHHHHHHHHHHTCSSSC-CCHHHHHHHHTS-CHHHHHHHHHHHTSSCHHHHHHHHHHH-HHHHHHHH--CCCCHHHHH
T ss_pred chHHHHHHHHHHHhhhcCC-CCHHHHHHHHCc-CHHHHHHHHHHHHCcCHHHHHHHHHHH-HHHHHHHc--CCCCHHHHH
Confidence 4567899999999 86654 244555555554 6666666666542 33322222 23333322 256777777
Q ss_pred HHcCCCC
Q 045340 78 KFFRIEN 84 (136)
Q Consensus 78 ~~fgI~~ 84 (136)
...|-.+
T Consensus 80 ~~~Gf~~ 86 (113)
T 3oio_A 80 LACGFSS 86 (113)
T ss_dssp HHTTCSC
T ss_pred HHHCCCC
Confidence 7766553
No 73
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=33.62 E-value=28 Score=23.76 Aligned_cols=25 Identities=20% Similarity=0.161 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCCHHHHHHHcCCCCCCCHH
Q 045340 61 TETLANRIKNKSVEYIRKFFRIENNFMPE 89 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fgI~~D~T~E 89 (136)
.+.||+.|+||+.+|-..++. |+|.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~----f~pk 37 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLE----FNDK 37 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHH----HCCH
Confidence 367899999999999998887 4664
No 74
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=33.22 E-value=45 Score=17.38 Aligned_cols=17 Identities=12% Similarity=0.149 Sum_probs=14.5
Q ss_pred HhcCCCHHHHHHHcCCC
Q 045340 67 RIKNKSVEYIRKFFRIE 83 (136)
Q Consensus 67 ~ikgKt~eEIR~~fgI~ 83 (136)
...|.|..+|.+.|||.
T Consensus 18 ~~~g~s~~~IA~~lgis 34 (51)
T 1tc3_C 18 KLLNVSLHEMSRKISRS 34 (51)
T ss_dssp HHTTCCHHHHHHHHTCC
T ss_pred HHcCCCHHHHHHHHCcC
Confidence 34689999999999986
No 75
>3d55_A Antitoxin, uncharacterized protein RV3357/MT3465; tetramer, toxin neutraliSer, toxin inhibitor; 2.13A {Mycobacterium tuberculosis} PDB: 3cto_A 3oei_A* 3oei_E*
Probab=31.66 E-value=27 Score=22.55 Aligned_cols=47 Identities=21% Similarity=0.162 Sum_probs=20.8
Q ss_pred ChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCH-----HHHHHHcCCC
Q 045340 37 SNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSV-----EYIRKFFRIE 83 (136)
Q Consensus 37 d~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~-----eEIR~~fgI~ 83 (136)
+.+..-.|....+.|..+.+.+-..+.++..-.|++. +|+++.+|+.
T Consensus 39 s~e~y~~l~et~~ll~~~~~~~~l~~a~~~~~~G~~~~~~~l~el~~~lg~~ 90 (91)
T 3d55_A 39 SADDYDAWQETVYLLRSPENARRLMEAVARDKAGHSAFTKSVDELREMAGGE 90 (91)
T ss_dssp EHHHHHHHHHHHHHTTSHHHHHHHHHHHTC----------------------
T ss_pred eHHHHhhHHHHHHHHhChHHHHHHHHHHHHHHcCCCccCCCHHHHHHHhCCC
Confidence 5555555666666777788887777788776667654 8899999875
No 76
>3kf9_B MLCK2, myosin light chain kinase 2, skeletal/cardiac MUS; centrin, cell cycle, cell divisio mitosis, calmodulin-binding; 2.60A {Scherffelia dubia}
Probab=31.21 E-value=23 Score=17.88 Aligned_cols=13 Identities=15% Similarity=-0.036 Sum_probs=10.1
Q ss_pred HHHHHHHhhhhhc
Q 045340 40 ELKEMLLVANYLN 52 (136)
Q Consensus 40 ~L~~Li~AAnyL~ 52 (136)
.-|..+.|||+|.
T Consensus 6 K~f~av~Aanrl~ 18 (22)
T 3kf9_B 6 KNFIAVSAANRFK 18 (26)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 4578899999873
No 77
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=30.63 E-value=33 Score=23.41 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCCHHHHHHHcCC
Q 045340 61 TETLANRIKNKSVEYIRKFFRI 82 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fgI 82 (136)
.+.||+.|+||+.++-..++.-
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~ 38 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY 38 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999999998888774
No 78
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=30.53 E-value=11 Score=27.07 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=15.1
Q ss_pred hcCCCHHHHHHHcCCCCCC
Q 045340 68 IKNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~~D~ 86 (136)
+.|-..+++++.|||+.+.
T Consensus 156 ~~~~~~~~v~~~l~lp~~~ 174 (204)
T 2b67_A 156 ILGFDKSKVNEVLEIEDRF 174 (204)
T ss_dssp ECCBCHHHHHHHHTCCTTE
T ss_pred EcccCHHHHHHHhCCCCCC
Confidence 3456789999999998764
No 79
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.49 E-value=34 Score=20.93 Aligned_cols=21 Identities=14% Similarity=0.143 Sum_probs=18.5
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+.|+|+.++|+.+.
T Consensus 32 W~~Ia~~l~~Rt~~qcr~Rw~ 52 (70)
T 2dim_A 32 WSRIASLLHRKSAKQCKARWY 52 (70)
T ss_dssp HHHHHHHSTTCCHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHH
Confidence 578999999999999999863
No 80
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=30.22 E-value=36 Score=27.50 Aligned_cols=43 Identities=7% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCChhHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCC
Q 045340 35 GKSNDELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRI 82 (136)
Q Consensus 35 ~ld~~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI 82 (136)
.|+......++.|+.--|-.. ...||..+.|||++|+++++.+
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr~~-----~~~IA~ev~~Kt~eEV~~Y~~v 154 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGRDD-----IDNIAKDVEGKTPEEVIEYNAV 154 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCTTC-----HHHHTTSSTTCCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCHHH-----HHHHHHHhcCCCHHHHHHHHHH
Confidence 367888889999966666543 3578888889999999998863
No 81
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=29.44 E-value=13 Score=26.77 Aligned_cols=36 Identities=14% Similarity=0.137 Sum_probs=25.0
Q ss_pred HHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Q 045340 41 LKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 41 L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~ 86 (136)
+..|+.||..||+-.. .+.|-..+++++.|||+.++
T Consensus 118 ~~nl~LaA~~~Glgs~----------~~~~~~~~~~~~~l~lp~~~ 153 (200)
T 2fre_A 118 WFSLAMQAHLLGYHAH----------GMGGIFKDRIVEKLDIPDGF 153 (200)
T ss_dssp HHHHHHHHHHTTCEEE----------EECCBCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHHCCccee----------eEcccCHHHHHHHcCCCCCc
Confidence 3456666666666432 24566889999999999764
No 82
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=28.95 E-value=15 Score=26.39 Aligned_cols=19 Identities=16% Similarity=0.380 Sum_probs=15.1
Q ss_pred hcCCCHHHHHHHcCCC-CCC
Q 045340 68 IKNKSVEYIRKFFRIE-NNF 86 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~-~D~ 86 (136)
+.|-..+++++.|||+ .++
T Consensus 164 ~~~~~~~~v~~~l~lp~~~~ 183 (218)
T 1vfr_A 164 MEGIDPELLSEIFADELKGY 183 (218)
T ss_dssp ECCSCHHHHHHHTTTTTTTE
T ss_pred ccccCHHHHHHHhCCCcccc
Confidence 4456889999999998 664
No 83
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=28.64 E-value=40 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
-..||..+ |+|..++|..|.
T Consensus 45 W~~IA~~l-gRt~~q~knRw~ 64 (73)
T 2llk_A 45 WATIGAAL-GRSASSVKDRCR 64 (73)
T ss_dssp HHHHHHHH-TSCHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHH
Confidence 67889999 999999999886
No 84
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.33 E-value=68 Score=19.05 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=16.9
Q ss_pred HHHHHHhcCCCHHHHHHHcCCC
Q 045340 62 ETLANRIKNKSVEYIRKFFRIE 83 (136)
Q Consensus 62 ~~IA~~ikgKt~eEIR~~fgI~ 83 (136)
+.+.-...|+|..||-+.+|++
T Consensus 23 ~vl~l~~~g~s~~eIA~~l~is 44 (79)
T 1x3u_A 23 QVLSAVVAGLPNKSIAYDLDIS 44 (79)
T ss_dssp HHHHHHTTTCCHHHHHHHTTSC
T ss_pred HHHHHHHcCCCHHHHHHHHCcC
Confidence 3333346799999999999986
No 85
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=28.14 E-value=38 Score=23.05 Aligned_cols=21 Identities=19% Similarity=0.254 Sum_probs=18.4
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
.+.||+.|+||+.++-..++.
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~ 37 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILT 37 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHh
Confidence 357899999999999888887
No 86
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=28.03 E-value=16 Score=26.52 Aligned_cols=35 Identities=23% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCC
Q 045340 42 KEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 42 ~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~ 86 (136)
-.|+.||..||+-.. .+.|-..+++|+.|||+.+.
T Consensus 120 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~l~lp~~~ 154 (191)
T 3h4o_A 120 DHMMLQATELGLASV----------WVCYFNPDIIREEFSLPDNL 154 (191)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTE
T ss_pred HHHHHHHHHCCCCEE----------EEcccCHHHHHHHhCcCCCc
Confidence 455555555555432 34466789999999998764
No 87
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=27.63 E-value=70 Score=21.41 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=15.1
Q ss_pred HHHHHHh-----cCCCHHHHHHHcC
Q 045340 62 ETLANRI-----KNKSVEYIRKFFR 81 (136)
Q Consensus 62 ~~IA~~i-----kgKt~eEIR~~fg 81 (136)
-.||+.. .+.|.|+|+..|-
T Consensus 53 ~vI~DRy~~~~~~~Rt~EdLK~RyY 77 (93)
T 3hm5_A 53 VVIHDRYDHQQFKKRSVEDLKERYY 77 (93)
T ss_dssp HHHHHHSCTTTSCCCCHHHHHHHHH
T ss_pred eeehhhhccCCCCCCCHHHHHHHHH
Confidence 4678887 4789999988763
No 88
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=27.58 E-value=49 Score=20.47 Aligned_cols=22 Identities=14% Similarity=0.203 Sum_probs=17.2
Q ss_pred CCHHHHHHHcCCCCC---CCHHHHH
Q 045340 71 KSVEYIRKFFRIENN---FMPEEEE 92 (136)
Q Consensus 71 Kt~eEIR~~fgI~~D---~T~EEee 92 (136)
+|.+|-++++||+.+ .|.++..
T Consensus 1 mt~~EA~~ILgv~~~~~~a~~~~Ik 25 (65)
T 2guz_B 1 MTLDESCKILNIEESKGDLNMDKIN 25 (65)
T ss_dssp CCHHHHHHHTTCCGGGTCCSHHHHH
T ss_pred CCHHHHHHHhCCCCCcCcCCHHHHH
Confidence 478899999999987 6776543
No 89
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=27.41 E-value=38 Score=26.57 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.4
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
...||..+.|||+.++|.+|.
T Consensus 155 W~~IAk~VgTKT~~QcKnfY~ 175 (235)
T 2iw5_B 155 FQAISDVIGNKSVVQVKNFFV 175 (235)
T ss_dssp HHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHH
Confidence 688999999999999999986
No 90
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=26.97 E-value=21 Score=25.03 Aligned_cols=52 Identities=8% Similarity=0.017 Sum_probs=37.0
Q ss_pred hHHHHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHH------HcCCCCCCCHHHHHHH
Q 045340 39 DELKEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRK------FFRIENNFMPEEEEAA 94 (136)
Q Consensus 39 ~~L~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~------~fgI~~D~T~EEee~i 94 (136)
.....++.+-..++= ..+...|++.++|+..+.|++ +||+-.|++..+...+
T Consensus 16 ~~AqkiLs~V~r~~~----rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~l 73 (134)
T 3aaf_A 16 PQAFKLLSAVDILGE----KFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAF 73 (134)
T ss_dssp HHHHHHHHHHHHTTT----CSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----cccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHH
Confidence 344555555555442 256678888899988777765 7899999999988765
No 91
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.74 E-value=41 Score=20.26 Aligned_cols=21 Identities=14% Similarity=0.165 Sum_probs=17.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHcC
Q 045340 60 LTETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~~fg 81 (136)
--..||. +-|+|+.++|..+.
T Consensus 30 ~W~~Ia~-~~gRt~~qcr~Rw~ 50 (66)
T 2din_A 30 QWRTIAP-IIGRTAAQCLEHYE 50 (66)
T ss_dssp CHHHHHH-HHSSCHHHHHHHHH
T ss_pred CHHHHhc-ccCcCHHHHHHHHH
Confidence 3578888 77999999998875
No 92
>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1
Probab=26.63 E-value=20 Score=25.24 Aligned_cols=16 Identities=6% Similarity=0.177 Sum_probs=12.4
Q ss_pred CHHHHHHHcCCCCCCC
Q 045340 72 SVEYIRKFFRIENNFM 87 (136)
Q Consensus 72 t~eEIR~~fgI~~D~T 87 (136)
..+++++.|||+.++.
T Consensus 156 ~~~~~~~~l~lp~~~~ 171 (200)
T 1ywq_A 156 VDAEVKETWNIPAEWS 171 (200)
T ss_dssp THHHHHHHTTCCTTEE
T ss_pred cHHHHHHHhCCCCCce
Confidence 4589999999987643
No 93
>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*
Probab=25.60 E-value=18 Score=26.48 Aligned_cols=19 Identities=11% Similarity=0.139 Sum_probs=15.1
Q ss_pred hcCCCHHHHHHHcCCCCCC
Q 045340 68 IKNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~~D~ 86 (136)
+.|-..+++++.|||+.++
T Consensus 169 ~~~~~~~~v~~~L~lp~~~ 187 (230)
T 2isk_A 169 VSIFHESEIKAILGIPDHV 187 (230)
T ss_dssp CCCSCHHHHHHHHTCCTTE
T ss_pred ecccCHHHHHHHhCCCCCc
Confidence 3466789999999998764
No 94
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=25.09 E-value=19 Score=25.57 Aligned_cols=19 Identities=11% Similarity=0.097 Sum_probs=14.9
Q ss_pred cCCCHHHHHHHcCCCCCCC
Q 045340 69 KNKSVEYIRKFFRIENNFM 87 (136)
Q Consensus 69 kgKt~eEIR~~fgI~~D~T 87 (136)
.|-..+++++.|||+.++.
T Consensus 158 ~~~~~~~v~~~l~lp~~~~ 176 (205)
T 1nox_A 158 LGFDPERVRAILGLPSRAA 176 (205)
T ss_dssp CCSCHHHHHHHHTCCTTCE
T ss_pred cCCCHHHHHHHhCCCCCCc
Confidence 3557899999999987653
No 95
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=25.06 E-value=16 Score=26.41 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=15.6
Q ss_pred hcCCCHHHHHHHcCC-CCCCC
Q 045340 68 IKNKSVEYIRKFFRI-ENNFM 87 (136)
Q Consensus 68 ikgKt~eEIR~~fgI-~~D~T 87 (136)
+.|-..+++|+.||| +.++.
T Consensus 163 i~~~~~~~v~~~L~l~p~~~~ 183 (212)
T 3ge6_A 163 IGGYEKDQIAEAFGMEKDRYV 183 (212)
T ss_dssp ECCSCHHHHHHHTTCCSSSEE
T ss_pred ecccCHHHHHHHhCCCCCCce
Confidence 345678999999999 77653
No 96
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=25.04 E-value=16 Score=26.54 Aligned_cols=18 Identities=17% Similarity=0.471 Sum_probs=14.6
Q ss_pred cCCCHHHHHHHcCCCCCC
Q 045340 69 KNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 69 kgKt~eEIR~~fgI~~D~ 86 (136)
.|-..+++++.|||+.++
T Consensus 169 ~~~~~~~v~~~L~lp~~~ 186 (218)
T 3bem_A 169 IGFDAEAVKRILNIDDQF 186 (218)
T ss_dssp CCSCHHHHHHHHTCCTTE
T ss_pred cCcCHHHHHHHhCCCCCc
Confidence 355789999999999764
No 97
>3o3r_A Aldo-keto reductase family 1, member B7; aldose reductase like protein, AKR1B14, oxidoreductase; HET: NAP; 1.86A {Rattus norvegicus} SCOP: c.1.7.1 PDB: 3qkz_A*
Probab=24.78 E-value=96 Score=24.01 Aligned_cols=29 Identities=14% Similarity=0.161 Sum_probs=23.7
Q ss_pred cCCCHHHHHHHcCCCC-CCCHHHHHHHhhh
Q 045340 69 KNKSVEYIRKFFRIEN-NFMPEEEEAARND 97 (136)
Q Consensus 69 kgKt~eEIR~~fgI~~-D~T~EEee~ir~e 97 (136)
+..|+++|++-+..-+ .+|+||.++|.+-
T Consensus 263 g~~~~~~l~en~~a~~~~L~~ee~~~l~~l 292 (316)
T 3o3r_A 263 KSVTLSHIKENIQVFDFQLSEEDMAAILSL 292 (316)
T ss_dssp BCCSHHHHHHHTCCSSCCCCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHhhCCCCcCHHHHHHHHcc
Confidence 4478999999998754 6899999888664
No 98
>3kat_A Nacht, LRR and PYD domains-containing protein 1; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 3.10A {Homo sapiens}
Probab=24.67 E-value=31 Score=23.64 Aligned_cols=49 Identities=14% Similarity=0.129 Sum_probs=26.0
Q ss_pred CCCHHHHHHHhhhhchhhhcccccccchhhccCCchhhhhhc----ccchhhhhc
Q 045340 85 NFMPEEEEAARNDSTKISCIFLSGFCPILAFLGPGCFERCRL----IPKHAVQDL 135 (136)
Q Consensus 85 D~T~EEee~ir~en~w~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 135 (136)
=+|+||.+.|+.+..--.-+. ...-+|+.-||.|+....- ...|+++||
T Consensus 47 VLteee~e~I~ae~T~q~k~R--~Lld~v~~kG~~A~~~F~~~L~e~dp~L~~~L 99 (107)
T 3kat_A 47 VLSQEQYERVLAENTRPSQMR--KLFSLSQSWDRKCKDGLYQALKETHPHLIMEL 99 (107)
T ss_dssp TSCHHHHHHHHHCCSHHHHHH--HHHHGGGGCCTTHHHHHHHHHHHHCHHHHHHH
T ss_pred hCCHHHHHHHHhCCCCHHHHH--HHHHHhhcCCHHHHHHHHHHHHHcCHHHHHHH
Confidence 466777777766543322222 2233556666666654432 455666654
No 99
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=24.44 E-value=23 Score=25.34 Aligned_cols=19 Identities=11% Similarity=0.499 Sum_probs=15.3
Q ss_pred hcCCCHHHHHHHcCCCCCC
Q 045340 68 IKNKSVEYIRKFFRIENNF 86 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~~D~ 86 (136)
+.|-.++++|+.|||+.++
T Consensus 157 ~~~~~~~~v~~~L~lp~~~ 175 (206)
T 3gag_A 157 MRGVDFDAIKTYLDMPNGW 175 (206)
T ss_dssp BCCSCHHHHHHHTTCCTTE
T ss_pred ecccCHHHHHHHhCcCCCc
Confidence 4466789999999998765
No 100
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=24.26 E-value=55 Score=18.54 Aligned_cols=17 Identities=12% Similarity=-0.046 Sum_probs=15.1
Q ss_pred HhcCCCHHHHHHHcCCC
Q 045340 67 RIKNKSVEYIRKFFRIE 83 (136)
Q Consensus 67 ~ikgKt~eEIR~~fgI~ 83 (136)
...|+|..||-+.+||+
T Consensus 10 ~~~g~s~~eIA~~l~is 26 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHIS 26 (61)
T ss_dssp HHTSCCSHHHHHHTCSC
T ss_pred HHcCCCHHHHHHHhCCC
Confidence 46799999999999986
No 101
>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*
Probab=23.30 E-value=30 Score=25.13 Aligned_cols=18 Identities=6% Similarity=0.067 Sum_probs=14.7
Q ss_pred CCCHHHHHHHcCCCCCCC
Q 045340 70 NKSVEYIRKFFRIENNFM 87 (136)
Q Consensus 70 gKt~eEIR~~fgI~~D~T 87 (136)
+-..+++|+.|||+.+..
T Consensus 157 ~~~~~~v~~~L~lp~~~~ 174 (208)
T 4dn2_A 157 VFDEQQLGELLGIPAELR 174 (208)
T ss_dssp CCCHHHHHHHHTCCTTCE
T ss_pred ccCHHHHHHHhCcCCCce
Confidence 457899999999987654
No 102
>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=22.61 E-value=1e+02 Score=18.72 Aligned_cols=24 Identities=0% Similarity=0.076 Sum_probs=19.4
Q ss_pred CCCHHHHHHHcCCCC-CCCHHHHHH
Q 045340 70 NKSVEYIRKFFRIEN-NFMPEEEEA 93 (136)
Q Consensus 70 gKt~eEIR~~fgI~~-D~T~EEee~ 93 (136)
++|.++-.++||++. +.|.+|..+
T Consensus 10 ~m~~~~~y~iLgl~~~~a~~~eIk~ 34 (71)
T 2guz_A 10 KMNSKEALQILNLTENTLTKKKLKE 34 (71)
T ss_dssp SCCHHHHHHHTTCCTTTCCHHHHHH
T ss_pred CCCHHHHHHHcCCCCCCCCHHHHHH
Confidence 578899999999998 788876543
No 103
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=22.45 E-value=71 Score=22.05 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHcCCCC
Q 045340 55 EMLDYLTETLANRIKNKSVEYIRKFFRIEN 84 (136)
Q Consensus 55 ~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~ 84 (136)
.+.+-.|..+| .|+|..+|.+.+|+|+
T Consensus 16 e~~e~I~~~i~---~G~sl~~i~~~~~~ps 42 (140)
T 4dyq_A 16 EVADDICSLLS---SGESLLKVCKRPGMPD 42 (140)
T ss_dssp THHHHHHHHHH---TTCCHHHHHTSTTCCC
T ss_pred HHHHHHHHHHH---CCCcHHHHHhcCCCCC
Confidence 45566777766 6999999999999974
No 104
>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}
Probab=22.40 E-value=23 Score=24.89 Aligned_cols=16 Identities=13% Similarity=0.169 Sum_probs=13.1
Q ss_pred CCHHHHHHHcCCCCCC
Q 045340 71 KSVEYIRKFFRIENNF 86 (136)
Q Consensus 71 Kt~eEIR~~fgI~~D~ 86 (136)
-..+++++.|||+.++
T Consensus 156 ~~~~~~~~~l~lp~~~ 171 (202)
T 2wqf_A 156 LIDEAVAKEWNLPESW 171 (202)
T ss_dssp TTHHHHHHHTTCCTTE
T ss_pred ccHHHHHHHhCcCccc
Confidence 4579999999998764
No 105
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=21.89 E-value=51 Score=23.40 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=18.2
Q ss_pred HHHHHHHhcCCCHHHHHHHcCC
Q 045340 61 TETLANRIKNKSVEYIRKFFRI 82 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fgI 82 (136)
.+.||+.|+||++++-..++.-
T Consensus 38 ~r~Va~~IRG~~v~eAl~~L~f 59 (134)
T 2zjr_P 38 VRLVVDVIRGKSVQDAEDLLRF 59 (134)
T ss_dssp HHHHHHHSTTSBHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHH
Confidence 4678999999999998888764
No 106
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=21.81 E-value=25 Score=25.74 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=23.6
Q ss_pred HHHHHhhhhhchHHHHHHHHHHHHHHhcCCCHHHHHHHcCCCCCCC
Q 045340 42 KEMLLVANYLNITEMLDYLTETLANRIKNKSVEYIRKFFRIENNFM 87 (136)
Q Consensus 42 ~~Li~AAnyL~I~~Ll~l~c~~IA~~ikgKt~eEIR~~fgI~~D~T 87 (136)
-.|+.||..||+-.. .+.|-..+++|+.|||+.+..
T Consensus 129 ~nl~LaA~~lGLgsc----------~~~~~~~~~v~~~L~lp~~~~ 164 (198)
T 3ge5_A 129 TYMMLEAHSLGLGCT----------WVCAFDQALCSEIFDIPSHMT 164 (198)
T ss_dssp HHHHHHHHHTTCEEE----------EECCSCHHHHHHHTTCCTTEE
T ss_pred HHHHHHHHHCCCCEE----------EECccCHHHHHHHhCcCCCce
Confidence 445555555555432 344567899999999987653
No 107
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=21.70 E-value=79 Score=18.55 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=15.5
Q ss_pred HHHHHHHHhcCCCHHHHHH
Q 045340 60 LTETLANRIKNKSVEYIRK 78 (136)
Q Consensus 60 ~c~~IA~~ikgKt~eEIR~ 78 (136)
-++.++..|+.+.|+.++.
T Consensus 9 kSk~L~~Ll~s~~P~Dlq~ 27 (45)
T 1j2j_B 9 KSKMLARLLKSSHPEDLRA 27 (45)
T ss_dssp HHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHHcCChhhHHH
Confidence 4678899999999998774
No 108
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=20.92 E-value=75 Score=19.63 Aligned_cols=16 Identities=13% Similarity=0.142 Sum_probs=13.0
Q ss_pred hcCCCHHHHHHHcCCC
Q 045340 68 IKNKSVEYIRKFFRIE 83 (136)
Q Consensus 68 ikgKt~eEIR~~fgI~ 83 (136)
..|+|.+||-+.+||.
T Consensus 34 ~~g~s~~eIA~~l~is 49 (82)
T 1je8_A 34 AQGLPNKMIARRLDIT 49 (82)
T ss_dssp TTTCCHHHHHHHHTSC
T ss_pred HcCCCHHHHHHHHCcC
Confidence 4688888888888876
No 109
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=20.52 E-value=61 Score=23.57 Aligned_cols=21 Identities=19% Similarity=0.371 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCCHHHHHHHcC
Q 045340 61 TETLANRIKNKSVEYIRKFFR 81 (136)
Q Consensus 61 c~~IA~~ikgKt~eEIR~~fg 81 (136)
++.||+.|+||+.++-..++.
T Consensus 29 ~r~va~~IrG~~v~~A~~~L~ 49 (155)
T 1vq8_R 29 SKAIAREIKGKTAGEAVDYLE 49 (155)
T ss_dssp HHHHHHHHTTSBHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHH
Confidence 467899999999999888776
No 110
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=20.47 E-value=44 Score=20.43 Aligned_cols=17 Identities=35% Similarity=0.485 Sum_probs=13.3
Q ss_pred cCCCHHHHHHHcCCCCC
Q 045340 69 KNKSVEYIRKFFRIENN 85 (136)
Q Consensus 69 kgKt~eEIR~~fgI~~D 85 (136)
-|.|.+|||+++...+.
T Consensus 25 lGlsleEIrefL~l~~~ 41 (57)
T 1b0n_B 25 ANISPEEIRKYLLLNKK 41 (57)
T ss_dssp TTCCHHHHHHHHHHC--
T ss_pred cCCCHHHHHHHHHHhcc
Confidence 39999999999987643
No 111
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=20.24 E-value=21 Score=25.91 Aligned_cols=21 Identities=10% Similarity=-0.088 Sum_probs=16.3
Q ss_pred HhcCCCHHHHHHHcCCC-CCCC
Q 045340 67 RIKNKSVEYIRKFFRIE-NNFM 87 (136)
Q Consensus 67 ~ikgKt~eEIR~~fgI~-~D~T 87 (136)
.+.|-..+++++.|||+ .+..
T Consensus 160 ~~~~~~~~~~~~~l~lp~~~~~ 181 (210)
T 3qdl_A 160 IIGGFDPLKVGEVLEERINKPK 181 (210)
T ss_dssp EECCSCHHHHHHHHHTTSCCCE
T ss_pred eecccCHHHHHHHhCCCCCCce
Confidence 34567789999999998 6654
Done!