Query 045342
Match_columns 243
No_of_seqs 148 out of 500
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 12:16:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045342.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045342hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13962 PGG: Domain of unknow 99.9 9.2E-27 2E-31 185.0 11.8 108 83-198 1-113 (113)
2 PF13857 Ank_5: Ankyrin repeat 98.2 5.8E-07 1.3E-11 62.6 1.7 49 8-70 7-55 (56)
3 PHA02741 hypothetical protein; 97.1 0.00094 2E-08 55.6 5.2 22 54-75 122-143 (169)
4 KOG0195 Integrin-linked kinase 96.8 0.00085 1.8E-08 62.5 3.1 61 2-77 81-146 (448)
5 PHA02736 Viral ankyrin protein 96.5 0.0029 6.3E-08 51.4 3.6 49 11-74 85-136 (154)
6 PHA02946 ankyin-like protein; 96.3 0.0037 7.9E-08 60.4 3.8 51 11-74 202-252 (446)
7 PF13637 Ank_4: Ankyrin repeat 96.2 0.0029 6.4E-08 43.0 1.8 25 7-32 24-48 (54)
8 KOG0509 Ankyrin repeat and DHH 96.1 0.0092 2E-07 59.9 5.7 19 56-74 237-255 (600)
9 PHA02946 ankyin-like protein; 96.0 0.0079 1.7E-07 58.1 4.4 58 2-73 53-114 (446)
10 PHA02736 Viral ankyrin protein 95.8 0.0034 7.4E-08 51.0 0.7 61 4-73 4-64 (154)
11 PHA02743 Viral ankyrin protein 95.7 0.011 2.3E-07 49.3 3.7 21 11-32 51-71 (166)
12 KOG4412 26S proteasome regulat 95.7 0.016 3.5E-07 50.9 4.7 14 11-25 166-179 (226)
13 PHA02859 ankyrin repeat protei 95.6 0.015 3.3E-07 50.3 4.1 17 57-73 185-201 (209)
14 KOG0508 Ankyrin repeat protein 95.6 0.0067 1.4E-07 59.6 2.0 51 10-74 521-571 (615)
15 PHA03095 ankyrin-like protein; 95.5 0.012 2.6E-07 55.6 3.6 18 56-73 282-299 (471)
16 KOG0510 Ankyrin repeat protein 95.3 0.0066 1.4E-07 62.7 1.1 26 90-115 510-535 (929)
17 PF00023 Ank: Ankyrin repeat H 95.0 0.0092 2E-07 36.8 0.7 17 16-33 1-17 (33)
18 PHA02798 ankyrin-like protein; 95.0 0.018 3.9E-07 55.7 3.1 53 9-75 250-302 (489)
19 PHA03100 ankyrin repeat protei 94.9 0.024 5.2E-07 53.9 3.7 58 3-74 232-293 (480)
20 PHA02795 ankyrin-like protein; 94.9 0.024 5.3E-07 55.2 3.7 59 2-74 202-264 (437)
21 PHA02741 hypothetical protein; 94.8 0.025 5.4E-07 47.0 3.1 61 5-75 11-71 (169)
22 PHA02989 ankyrin repeat protei 94.7 0.026 5.5E-07 54.7 3.3 52 9-74 248-299 (494)
23 KOG0510 Ankyrin repeat protein 94.7 0.026 5.6E-07 58.5 3.4 66 11-77 267-355 (929)
24 PF13606 Ank_3: Ankyrin repeat 94.4 0.017 3.7E-07 35.4 0.8 17 16-33 1-17 (30)
25 PLN03192 Voltage-dependent pot 94.2 0.056 1.2E-06 56.0 4.7 19 56-74 647-665 (823)
26 PF13637 Ank_4: Ankyrin repeat 94.2 0.042 9.1E-07 37.2 2.5 44 18-74 1-44 (54)
27 PHA03095 ankyrin-like protein; 94.0 0.082 1.8E-06 50.0 5.0 51 11-74 216-267 (471)
28 PLN03192 Voltage-dependent pot 94.0 0.048 1E-06 56.5 3.7 57 3-73 540-600 (823)
29 PHA02874 ankyrin repeat protei 94.0 0.057 1.2E-06 51.2 3.8 18 56-73 280-297 (434)
30 PF12796 Ank_2: Ankyrin repeat 94.0 0.069 1.5E-06 39.0 3.5 58 2-74 11-69 (89)
31 KOG0512 Fetal globin-inducing 93.9 0.037 8E-07 48.5 2.2 43 11-68 91-134 (228)
32 PHA02878 ankyrin repeat protei 93.8 0.076 1.7E-06 51.0 4.5 21 11-32 161-182 (477)
33 PF12796 Ank_2: Ankyrin repeat 93.7 0.028 6.1E-07 41.1 0.9 30 2-32 40-73 (89)
34 PTZ00322 6-phosphofructo-2-kin 93.5 0.066 1.4E-06 54.5 3.6 50 11-74 109-158 (664)
35 PHA02875 ankyrin repeat protei 93.5 0.073 1.6E-06 49.8 3.7 17 57-73 161-177 (413)
36 KOG0818 GTPase-activating prot 93.5 0.12 2.6E-06 51.2 5.2 58 11-81 160-218 (669)
37 KOG3676 Ca2+-permeable cation 93.5 0.082 1.8E-06 54.6 4.2 61 2-74 254-318 (782)
38 PHA02730 ankyrin-like protein; 93.3 0.083 1.8E-06 54.2 3.9 50 12-73 36-86 (672)
39 PHA02716 CPXV016; CPX019; EVM0 93.2 0.12 2.6E-06 53.7 4.8 57 2-71 193-254 (764)
40 PHA02798 ankyrin-like protein; 93.1 0.11 2.3E-06 50.4 4.2 59 3-73 91-154 (489)
41 PHA02874 ankyrin repeat protei 92.9 0.11 2.3E-06 49.3 3.8 16 58-73 184-199 (434)
42 TIGR00870 trp transient-recept 92.8 0.064 1.4E-06 54.6 2.3 62 10-74 201-267 (743)
43 PHA02716 CPXV016; CPX019; EVM0 92.5 0.13 2.9E-06 53.4 4.1 56 10-75 490-546 (764)
44 PHA02791 ankyrin-like protein; 92.4 0.12 2.6E-06 47.3 3.3 20 11-31 88-107 (284)
45 PHA02791 ankyrin-like protein; 92.3 0.11 2.4E-06 47.6 3.0 31 2-33 13-45 (284)
46 KOG4412 26S proteasome regulat 92.3 0.082 1.8E-06 46.6 1.9 17 56-72 98-114 (226)
47 PHA02743 Viral ankyrin protein 91.8 0.25 5.5E-06 41.0 4.4 18 56-73 120-137 (166)
48 PHA02878 ankyrin repeat protei 91.8 0.17 3.6E-06 48.7 3.7 58 2-74 182-244 (477)
49 PHA02876 ankyrin repeat protei 91.8 0.16 3.4E-06 51.2 3.7 57 3-73 160-220 (682)
50 PF13857 Ank_5: Ankyrin repeat 91.7 0.082 1.8E-06 36.4 1.1 23 2-25 30-56 (56)
51 PHA02876 ankyrin repeat protei 91.6 0.2 4.3E-06 50.5 4.1 17 57-73 469-485 (682)
52 PHA02859 ankyrin repeat protei 91.5 0.34 7.3E-06 41.9 4.9 60 2-72 67-131 (209)
53 PHA02884 ankyrin repeat protei 91.5 0.2 4.3E-06 46.6 3.7 30 2-32 47-84 (300)
54 KOG0508 Ankyrin repeat protein 91.4 0.14 3.1E-06 50.6 2.7 49 10-73 176-224 (615)
55 KOG0522 Ankyrin repeat protein 91.4 0.11 2.4E-06 51.5 2.0 44 11-68 49-92 (560)
56 PHA02792 ankyrin-like protein; 91.3 0.25 5.4E-06 50.4 4.5 49 11-73 404-452 (631)
57 PHA02917 ankyrin-like protein; 91.2 0.23 4.9E-06 50.7 4.1 57 2-73 433-494 (661)
58 KOG0509 Ankyrin repeat and DHH 91.1 0.18 3.9E-06 50.8 3.2 49 11-73 139-187 (600)
59 PHA02875 ankyrin repeat protei 90.4 0.27 5.9E-06 45.9 3.6 18 57-74 128-145 (413)
60 COG0666 Arp FOG: Ankyrin repea 90.2 0.31 6.6E-06 39.5 3.3 60 9-74 98-157 (235)
61 PHA02917 ankyrin-like protein; 90.1 0.54 1.2E-05 48.0 5.6 52 11-74 26-78 (661)
62 PHA02730 ankyrin-like protein; 89.1 0.6 1.3E-05 48.0 5.1 57 3-73 444-505 (672)
63 PHA03100 ankyrin repeat protei 88.9 0.41 8.9E-06 45.4 3.6 18 57-74 169-186 (480)
64 PHA02989 ankyrin repeat protei 88.8 0.73 1.6E-05 44.6 5.3 28 2-30 89-120 (494)
65 KOG0195 Integrin-linked kinase 88.5 0.25 5.4E-06 46.4 1.8 52 3-68 49-104 (448)
66 KOG0505 Myosin phosphatase, re 88.1 0.41 8.8E-06 47.6 3.0 51 10-74 224-274 (527)
67 COG0666 Arp FOG: Ankyrin repea 88.0 0.41 8.9E-06 38.7 2.6 50 11-74 141-190 (235)
68 KOG0514 Ankyrin repeat protein 87.5 0.25 5.5E-06 47.5 1.1 48 11-71 262-309 (452)
69 cd00204 ANK ankyrin repeats; 86.3 0.79 1.7E-05 33.6 3.1 49 12-74 2-50 (126)
70 PHA02884 ankyrin repeat protei 85.6 0.86 1.9E-05 42.3 3.6 22 11-32 26-47 (300)
71 KOG0514 Ankyrin repeat protein 85.2 0.72 1.6E-05 44.5 2.8 54 11-77 367-421 (452)
72 cd00204 ANK ankyrin repeats; 84.9 1.3 2.7E-05 32.5 3.6 21 11-32 34-54 (126)
73 KOG0507 CASK-interacting adapt 79.9 1.4 3.1E-05 45.8 2.8 17 57-73 141-157 (854)
74 PHA02795 ankyrin-like protein; 77.4 1.5 3.3E-05 42.9 2.2 28 2-30 235-266 (437)
75 TIGR00870 trp transient-recept 76.5 2.8 6E-05 42.9 3.8 48 10-75 45-93 (743)
76 PHA02792 ankyrin-like protein; 76.4 2.5 5.4E-05 43.3 3.4 54 11-73 169-224 (631)
77 KOG4177 Ankyrin [Cell wall/mem 75.6 2.6 5.7E-05 45.8 3.4 21 11-32 567-587 (1143)
78 KOG0505 Myosin phosphatase, re 74.9 1.9 4.1E-05 43.0 2.1 23 11-34 100-122 (527)
79 KOG4177 Ankyrin [Cell wall/mem 72.9 3.1 6.8E-05 45.2 3.2 22 11-33 534-555 (1143)
80 smart00248 ANK ankyrin repeats 72.1 2 4.3E-05 22.7 0.9 16 16-32 1-16 (30)
81 KOG0783 Uncharacterized conser 70.0 3.1 6.7E-05 44.1 2.3 50 11-73 79-128 (1267)
82 PTZ00322 6-phosphofructo-2-kin 67.2 3 6.5E-05 42.6 1.6 31 2-33 129-163 (664)
83 KOG0515 p53-interacting protei 65.7 3.2 6.9E-05 41.9 1.4 28 2-30 597-628 (752)
84 KOG0512 Fetal globin-inducing 64.7 12 0.00027 33.0 4.7 17 58-74 192-208 (228)
85 KOG0782 Predicted diacylglycer 58.4 6.8 0.00015 40.0 2.2 17 58-74 961-977 (1004)
86 KOG0705 GTPase-activating prot 57.9 6.5 0.00014 40.1 2.0 46 12-73 656-701 (749)
87 PF06570 DUF1129: Protein of u 54.8 87 0.0019 27.1 8.3 15 62-77 43-57 (206)
88 KOG0506 Glutaminase (contains 52.8 12 0.00026 37.5 2.9 56 11-79 533-589 (622)
89 KOG1710 MYND Zn-finger and ank 48.9 14 0.00031 34.9 2.6 55 3-71 60-119 (396)
90 KOG4214 Myotrophin and similar 47.0 8.4 0.00018 30.8 0.7 18 17-34 33-50 (117)
91 KOG0507 CASK-interacting adapt 45.4 12 0.00027 39.2 1.7 23 9-32 41-63 (854)
92 KOG3676 Ca2+-permeable cation 41.2 4.7E+02 0.01 27.9 12.5 32 2-34 287-324 (782)
93 KOG0515 p53-interacting protei 38.7 22 0.00047 36.2 2.2 52 9-74 575-626 (752)
94 KOG0521 Putative GTPase activa 38.3 24 0.00051 37.2 2.6 50 10-73 682-731 (785)
95 COG4160 ArtM ABC-type arginine 35.7 87 0.0019 28.3 5.4 46 164-210 6-53 (228)
96 KOG4214 Myotrophin and similar 35.2 28 0.00061 27.9 1.9 57 3-73 49-109 (117)
97 KOG0520 Uncharacterized conser 34.2 26 0.00057 37.7 2.1 54 11-74 635-690 (975)
98 COG0581 PstA ABC-type phosphat 32.5 1.6E+02 0.0036 27.4 6.8 51 182-232 83-139 (292)
99 KOG0522 Ankyrin repeat protein 31.3 26 0.00057 35.3 1.5 22 11-33 82-103 (560)
100 KOG0502 Integral membrane anky 30.9 42 0.00092 30.8 2.6 23 10-33 153-175 (296)
101 PRK07668 hypothetical protein; 30.3 4.3E+02 0.0093 24.2 11.6 47 62-108 43-91 (254)
102 KOG2505 Ankyrin repeat protein 30.2 23 0.00049 35.7 0.8 47 12-72 425-471 (591)
103 PF12304 BCLP: Beta-casein lik 30.1 1.7E+02 0.0037 25.8 6.1 31 130-160 38-69 (188)
104 KOG2887 Membrane protein invol 27.5 2.4E+02 0.0053 24.5 6.5 88 130-232 75-164 (175)
105 PF02028 BCCT: BCCT family tra 24.6 6.6E+02 0.014 25.0 9.9 82 130-226 396-477 (485)
106 PF06610 DUF1144: Protein of u 23.8 4.4E+02 0.0096 22.2 8.8 85 133-233 12-103 (143)
107 PF07954 DUF1689: Protein of u 23.5 87 0.0019 26.6 3.1 63 71-134 7-75 (152)
108 PF13373 DUF2407_C: DUF2407 C- 23.5 4.3E+02 0.0092 21.9 7.2 64 74-151 43-111 (140)
109 PF14015 DUF4231: Protein of u 22.7 3.4E+02 0.0074 20.4 6.3 26 183-208 56-81 (112)
110 TIGR02711 symport_actP cation/ 22.4 6E+02 0.013 25.3 9.3 30 133-162 431-460 (549)
111 COG5336 Uncharacterized protei 20.6 2.1E+02 0.0046 23.2 4.6 42 143-201 54-95 (116)
112 PF02932 Neur_chan_memb: Neuro 20.2 4.3E+02 0.0092 20.6 7.8 12 169-180 24-35 (237)
113 KOG0502 Integral membrane anky 20.2 1.1E+02 0.0024 28.1 3.2 57 2-73 207-268 (296)
No 1
>PF13962 PGG: Domain of unknown function
Probab=99.94 E-value=9.2e-27 Score=184.96 Aligned_cols=108 Identities=34% Similarity=0.623 Sum_probs=96.5
Q ss_pred HHHHhhhhchhHHHHHHHHHHHhhhhccCCCCCCC----CCcccccCCc-hhhhHHHHhHHHHHHhHHHHHHHHHHHhhh
Q 045342 83 EKWMKYTSNSCMVVTALIATMMFATACTVPGGNIE----SGNPIFLRDK-LFMVFAISYALGFIFTSTPLLVFVSIQIAQ 157 (243)
Q Consensus 83 ~~~~k~~~~s~~vVA~LIaTvtFaaaft~PGG~~~----~G~~~l~~~~-~F~~F~i~d~iA~~~S~~av~~fl~il~s~ 157 (243)
|||++|++|+++|||+|||||||||++|+|||+++ .|+|++.+++ .|++|+++|++||++|+++++++++-+
T Consensus 1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~--- 77 (113)
T PF13962_consen 1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL--- 77 (113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 58999999999999999999999999999999943 6999999888 999999999999999999998876311
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045342 158 YAEKDYFVESLQKKLIIGLASLFISSIVNMMISFVATFSIV 198 (243)
Q Consensus 158 ~~~~d~f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~~v 198 (243)
++ +.+..++++..+..++++ |+.+|++||++|+|+|
T Consensus 78 ---~~-~~~~~~~~~~~~~~~~~~-a~~~~~~Af~~g~~~v 113 (113)
T PF13962_consen 78 ---DD-FRRFLRRYLLIASVLMWI-ALISMMVAFAAGIYLV 113 (113)
T ss_pred ---hh-HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccC
Confidence 33 566777788899999999 9999999999999976
No 2
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=98.21 E-value=5.8e-07 Score=62.57 Aligned_cols=49 Identities=22% Similarity=0.247 Sum_probs=24.1
Q ss_pred hccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHH
Q 045342 8 ISPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDI 70 (243)
Q Consensus 8 ~~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~di 70 (243)
..++.+|++| +||||+|++.++.+... .| ++ +....+.+|++|+||.|+
T Consensus 7 ~~~n~~d~~G-~T~LH~A~~~g~~~~v~-----~L-l~-------~g~d~~~~d~~G~Tpl~~ 55 (56)
T PF13857_consen 7 ADVNAQDKYG-NTPLHWAARYGHSEVVR-----LL-LQ-------NGADPNAKDKDGQTPLHY 55 (56)
T ss_dssp --TT---TTS---HHHHHHHHT-HHHHH-----HH-HH-------CT--TT---TTS--HHHH
T ss_pred CCCcCcCCCC-CcHHHHHHHcCcHHHHH-----HH-HH-------CcCCCCCCcCCCCCHHHh
Confidence 3457899999 99999999988765321 11 11 334568999999999986
No 3
>PHA02741 hypothetical protein; Provisional
Probab=97.07 E-value=0.00094 Score=55.62 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=16.3
Q ss_pred cccccccCCCCCChHHHHHhhh
Q 045342 54 HFLKKVQNIDGKTAQDIFIEQH 75 (243)
Q Consensus 54 ~~~~~~~N~~g~Tp~dif~~~h 75 (243)
....+.+|.+|+||.++.....
T Consensus 122 g~~~~~~n~~g~tpL~~A~~~~ 143 (169)
T PHA02741 122 GIDLHFCNADNKSPFELAIDNE 143 (169)
T ss_pred CCCCCcCCCCCCCHHHHHHHCC
Confidence 3456788889999988876643
No 4
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=96.83 E-value=0.00085 Score=62.47 Aligned_cols=61 Identities=21% Similarity=0.224 Sum_probs=39.0
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc-cccccccCCCCCChHHHHHhhhH
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH-HFLKKVQNIDGKTAQDIFIEQHK 76 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp-~~~~~~~N~~g~Tp~dif~~~h~ 76 (243)
||+.||+++ |++++.| |||||+|.--|..++-+ ..+. ....+..|++|.||.|..+..-+
T Consensus 81 divqkll~~kadvnavnehg-ntplhyacfwgydqiae--------------dli~~ga~v~icnk~g~tpldkakp~l~ 145 (448)
T KOG0195|consen 81 DIVQKLLSRKADVNAVNEHG-NTPLHYACFWGYDQIAE--------------DLISCGAAVNICNKKGMTPLDKAKPMLK 145 (448)
T ss_pred HHHHHHHHHhcccchhhccC-CCchhhhhhhcHHHHHH--------------HHHhccceeeecccCCCCchhhhchHHH
Confidence 567777776 6677777 77777777766543211 1111 11257899999999998765443
Q ss_pred H
Q 045342 77 D 77 (243)
Q Consensus 77 ~ 77 (243)
+
T Consensus 146 ~ 146 (448)
T KOG0195|consen 146 N 146 (448)
T ss_pred H
Confidence 3
No 5
>PHA02736 Viral ankyrin protein; Provisional
Probab=96.47 E-value=0.0029 Score=51.42 Aligned_cols=49 Identities=16% Similarity=-0.015 Sum_probs=31.0
Q ss_pred cccc-CCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc--cccccccCCCCCChHHHHHhh
Q 045342 11 QLID-ESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH--HFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D-~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp--~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+| .+| +||||+|++.++.+. ++..+. ....+.+|++|+||..+....
T Consensus 85 n~~~~~~g-~T~Lh~A~~~~~~~i--------------~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~ 136 (154)
T PHA02736 85 NGKERVFG-NTPLHIAVYTQNYEL--------------ATWLCNQPGVNMEILNYAFKTPYYVACER 136 (154)
T ss_pred cccCCCCC-CcHHHHHHHhCCHHH--------------HHHHHhCCCCCCccccCCCCCHHHHHHHc
Confidence 4566 367 888888887765432 222221 223577889999998887654
No 6
>PHA02946 ankyin-like protein; Provisional
Probab=96.30 E-value=0.0037 Score=60.41 Aligned_cols=51 Identities=16% Similarity=0.156 Sum_probs=32.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+|.+| +||||+|+..+.... . .++-.++....+.+|++|+||..+..+.
T Consensus 202 n~~d~~G-~TpLH~Aa~~~~~~~-~-----------iv~lLl~gadin~~d~~G~TpLh~A~~~ 252 (446)
T PHA02946 202 SKPDHDG-NTPLHIVCSKTVKNV-D-----------IINLLLPSTDVNKQNKFGDSPLTLLIKT 252 (446)
T ss_pred cccCCCC-CCHHHHHHHcCCCcH-H-----------HHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 4567777 777777776543210 0 0333334456788999999999887664
No 7
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=96.18 E-value=0.0029 Score=42.98 Aligned_cols=25 Identities=28% Similarity=0.065 Sum_probs=16.2
Q ss_pred hhccccccCCCCCchhhhhhhccCCc
Q 045342 7 FISPQLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 7 ~~~~~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
=..++.+|++| +||||.|++.++.+
T Consensus 24 ~~din~~d~~g-~t~lh~A~~~g~~~ 48 (54)
T PF13637_consen 24 GADINAQDEDG-RTPLHYAAKNGNID 48 (54)
T ss_dssp TSGTT-B-TTS---HHHHHHHTT-HH
T ss_pred CCCCCCCCCCC-CCHHHHHHHccCHH
Confidence 34468999999 99999999998744
No 8
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=96.14 E-value=0.0092 Score=59.86 Aligned_cols=19 Identities=32% Similarity=0.291 Sum_probs=15.9
Q ss_pred cccccCCCCCChHHHHHhh
Q 045342 56 LKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+..|.+|+||.|+.+++
T Consensus 237 ~~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 237 DLDKTNTNGKTPFDLAQER 255 (600)
T ss_pred cccccccCCCCHHHHHHHh
Confidence 4577888999999999775
No 9
>PHA02946 ankyin-like protein; Provisional
Probab=95.98 E-value=0.0079 Score=58.11 Aligned_cols=58 Identities=12% Similarity=0.105 Sum_probs=39.1
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
++.+.|++. +.+|++| +||||+|++.++.+... +.+++ ....+.+|++|+||......
T Consensus 53 ~iv~~Ll~~Gadvn~~d~~G-~TpLh~Aa~~g~~eiv~------lLL~~-------GAdin~~d~~g~TpLh~A~~ 114 (446)
T PHA02946 53 RFVEELLHRGYSPNETDDDG-NYPLHIASKINNNRIVA------MLLTH-------GADPNACDKQHKTPLYYLSG 114 (446)
T ss_pred HHHHHHHHCcCCCCccCCCC-CCHHHHHHHcCCHHHHH------HHHHC-------cCCCCCCCCCCCCHHHHHHH
Confidence 356666654 7899999 99999999998754321 11111 12356788899999876543
No 10
>PHA02736 Viral ankyrin protein; Provisional
Probab=95.75 E-value=0.0034 Score=51.01 Aligned_cols=61 Identities=21% Similarity=0.142 Sum_probs=36.0
Q ss_pred hhhhhccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 4 YNKFISPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 4 ~~~~~~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+|....++.+|++| +||||.|+..++... +...++......+...+.+|++|+||..+..+
T Consensus 4 ~~~~~~~~~~d~~g-~tpLh~A~~~g~~~~--------l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~ 64 (154)
T PHA02736 4 PEEIIFASEPDIEG-ENILHYLCRNGGVTD--------LLAFKNAISDENRYLVLEYNRHGKQCVHIVSN 64 (154)
T ss_pred cchhhHHHhcCCCC-CCHHHHHHHhCCHHH--------HHHHHHHhcchhHHHHHHhcCCCCEEEEeecc
Confidence 35566778999999 999999999876211 11111100001112234567888888765543
No 11
>PHA02743 Viral ankyrin protein; Provisional
Probab=95.75 E-value=0.011 Score=49.31 Aligned_cols=21 Identities=14% Similarity=0.101 Sum_probs=15.2
Q ss_pred ccccCCCCCchhhhhhhccCCc
Q 045342 11 QLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
+.+|++| +||||+|+..+..+
T Consensus 51 ~~~d~~g-~t~Lh~Aa~~g~~~ 71 (166)
T PHA02743 51 HRYDHHG-RQCTHMVAWYDRAN 71 (166)
T ss_pred hccCCCC-CcHHHHHHHhCccC
Confidence 5677888 88888888776543
No 12
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=95.71 E-value=0.016 Score=50.91 Aligned_cols=14 Identities=29% Similarity=0.105 Sum_probs=8.6
Q ss_pred ccccCCCCCchhhhh
Q 045342 11 QLIDESTKDNILHLA 25 (243)
Q Consensus 11 ~~~D~~G~NT~LHLA 25 (243)
|.+|+.| +||||+|
T Consensus 166 n~qDk~G-~TpL~~a 179 (226)
T KOG4412|consen 166 NTQDKYG-FTPLHHA 179 (226)
T ss_pred CcccccC-ccHHHHH
Confidence 5566666 6666666
No 13
>PHA02859 ankyrin repeat protein; Provisional
Probab=95.56 E-value=0.015 Score=50.25 Aligned_cols=17 Identities=18% Similarity=0.106 Sum_probs=11.9
Q ss_pred ccccCCCCCChHHHHHh
Q 045342 57 KKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~ 73 (243)
.+.+|++|+||.++...
T Consensus 185 i~~~d~~g~tpl~la~~ 201 (209)
T PHA02859 185 INETNKSGYNCYDLIKF 201 (209)
T ss_pred CCCCCCCCCCHHHHHhh
Confidence 46677778888777654
No 14
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.56 E-value=0.0067 Score=59.63 Aligned_cols=51 Identities=29% Similarity=0.298 Sum_probs=36.4
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+|..|+|| |||||+|++.-.++... +| ++ ......+.|..|+|+.|+.++.
T Consensus 521 vna~D~~~-ntplHIa~~~~~~si~~-----aL-----ie---~Gah~datN~~~~t~~~ll~~~ 571 (615)
T KOG0508|consen 521 VNARDFDN-NTPLHIAAQNNCPSIVN-----AL-----IE---AGAHLDATNAHKKTALDLLDEK 571 (615)
T ss_pred CCcccCCC-CchhHHHHHhccHHHHH-----HH-----HH---cccchhhhhhccccHHHHhchh
Confidence 48999999 99999999984443221 11 22 1223578999999999998653
No 15
>PHA03095 ankyrin-like protein; Provisional
Probab=95.54 E-value=0.012 Score=55.63 Aligned_cols=18 Identities=17% Similarity=0.263 Sum_probs=13.3
Q ss_pred cccccCCCCCChHHHHHh
Q 045342 56 LKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~~ 73 (243)
..+.+|++|+||.++..+
T Consensus 282 d~n~~~~~g~tpl~~A~~ 299 (471)
T PHA03095 282 DINAVSSDGNTPLSLMVR 299 (471)
T ss_pred CCcccCCCCCCHHHHHHH
Confidence 356778888888877654
No 16
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=95.31 E-value=0.0066 Score=62.68 Aligned_cols=26 Identities=8% Similarity=0.152 Sum_probs=19.5
Q ss_pred hchhHHHHHHHHHHHhhhhccCCCCC
Q 045342 90 SNSCMVVTALIATMMFATACTVPGGN 115 (243)
Q Consensus 90 ~~s~~vVA~LIaTvtFaaaft~PGG~ 115 (243)
-+++++-+..++.+|+=.-.+.||--
T Consensus 510 ~~nL~~Y~lFlv~lT~Yv~~~~~~~~ 535 (929)
T KOG0510|consen 510 LNNLLIYSLFLVSLTIYVLLIKAGMA 535 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccc
Confidence 35677788888888888877777753
No 17
>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....
Probab=95.02 E-value=0.0092 Score=36.78 Aligned_cols=17 Identities=29% Similarity=0.346 Sum_probs=14.4
Q ss_pred CCCCchhhhhhhccCCcc
Q 045342 16 STKDNILHLAAKLALPTH 33 (243)
Q Consensus 16 ~G~NT~LHLAa~~~~~~~ 33 (243)
+| +||||+|++.++.+.
T Consensus 1 dG-~TpLh~A~~~~~~~~ 17 (33)
T PF00023_consen 1 DG-NTPLHYAAQRGHPDI 17 (33)
T ss_dssp TS-BBHHHHHHHTTCHHH
T ss_pred Cc-ccHHHHHHHHHHHHH
Confidence 57 999999999987653
No 18
>PHA02798 ankyrin-like protein; Provisional
Probab=95.02 E-value=0.018 Score=55.69 Aligned_cols=53 Identities=15% Similarity=-0.057 Sum_probs=37.6
Q ss_pred ccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhhh
Q 045342 9 SPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQH 75 (243)
Q Consensus 9 ~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~h 75 (243)
.++.+|++| +||||+|+..++.+.. .+.++ .....+.+|++|+||..+..+.+
T Consensus 250 dvN~~d~~G-~TPL~~A~~~~~~~~v------~~LL~-------~GAdin~~d~~G~TpL~~A~~~~ 302 (489)
T PHA02798 250 DINQVDELG-FNPLYYSVSHNNRKIF------EYLLQ-------LGGDINIITELGNTCLFTAFENE 302 (489)
T ss_pred CCCCcCcCC-ccHHHHHHHcCcHHHH------HHHHH-------cCCcccccCCCCCcHHHHHHHcC
Confidence 457899999 9999999998775421 11111 12245889999999999877643
No 19
>PHA03100 ankyrin repeat protein; Provisional
Probab=94.94 E-value=0.024 Score=53.85 Aligned_cols=58 Identities=22% Similarity=0.144 Sum_probs=40.2
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+.|+.. +.+|++| +||||.|+..++.+... +.+ +. ....+.+|.+|+||.++..+.
T Consensus 232 iv~~Ll~~g~din~~d~~g-~TpL~~A~~~~~~~iv~------~Ll----~~---gad~n~~d~~g~tpl~~A~~~ 293 (480)
T PHA03100 232 VVNYLLSYGVPINIKDVYG-FTPLHYAVYNNNPEFVK------YLL----DL---GANPNLVNKYGDTPLHIAILN 293 (480)
T ss_pred HHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCHHHHH------HHH----Hc---CCCCCccCCCCCcHHHHHHHh
Confidence 45555555 7899999 99999999988754321 111 11 124578899999999987653
No 20
>PHA02795 ankyrin-like protein; Provisional
Probab=94.93 E-value=0.024 Score=55.24 Aligned_cols=59 Identities=15% Similarity=0.171 Sum_probs=41.9
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
|+.+-|++. +.+|++| +||||.|++.++.+... +.+ + .....+.+|++|.||.....+.
T Consensus 202 eIve~LIs~GADIN~kD~~G-~TpLh~Aa~~g~~eiVe------lLL----~---~GAdIN~~d~~G~TpLh~Aa~~ 264 (437)
T PHA02795 202 EIYKLCIPYIEDINQLDAGG-RTLLYRAIYAGYIDLVS------WLL----E---NGANVNAVMSNGYTCLDVAVDR 264 (437)
T ss_pred HHHHHHHhCcCCcCcCCCCC-CCHHHHHHHcCCHHHHH------HHH----H---CCCCCCCcCCCCCCHHHHHHHc
Confidence 566677766 7899999 99999999988754321 111 1 1123578899999999887653
No 21
>PHA02741 hypothetical protein; Provisional
Probab=94.82 E-value=0.025 Score=47.00 Aligned_cols=61 Identities=16% Similarity=0.179 Sum_probs=38.8
Q ss_pred hhhhccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhhh
Q 045342 5 NKFISPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQH 75 (243)
Q Consensus 5 ~~~~~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~h 75 (243)
++++ +.+|++| +|+||.|+..++.+.+..+ +.. .+..-.....+.+|.+|+||..+....+
T Consensus 11 ~~~~--~~~~~~g-~t~Lh~Aa~~g~~~~v~~l----~~~---~~~~~~ga~in~~d~~g~T~Lh~A~~~g 71 (169)
T PHA02741 11 EEMI--AEKNSEG-ENFFHEAARCGCFDIIARF----TPF---IRGDCHAAALNATDDAGQMCIHIAAEKH 71 (169)
T ss_pred HHHh--hccccCC-CCHHHHHHHcCCHHHHHHH----HHH---hccchhhhhhhccCCCCCcHHHHHHHcC
Confidence 4444 4789999 9999999999886532211 000 0000011235788999999998887643
No 22
>PHA02989 ankyrin repeat protein; Provisional
Probab=94.71 E-value=0.026 Score=54.69 Aligned_cols=52 Identities=17% Similarity=0.010 Sum_probs=36.5
Q ss_pred ccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 9 SPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 9 ~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
.++.+|++| +||||+|++.++.+... +.+ + .....+.+|++|.||.....+.
T Consensus 248 dvn~~d~~G-~TpL~~Aa~~~~~~~v~------~LL----~---~Gadin~~d~~G~TpL~~A~~~ 299 (494)
T PHA02989 248 KINKKDKKG-FNPLLISAKVDNYEAFN------YLL----K---LGDDIYNVSKDGDTVLTYAIKH 299 (494)
T ss_pred CCCCCCCCC-CCHHHHHHHhcCHHHHH------HHH----H---cCCCccccCCCCCCHHHHHHHc
Confidence 347899999 99999999987754321 111 1 1123578899999999887653
No 23
>KOG0510 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.70 E-value=0.026 Score=58.49 Aligned_cols=66 Identities=24% Similarity=0.340 Sum_probs=41.9
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhh--hHHhhc--chh---------------hhhhhc-c--ccccccCCCCCChH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIML--GVALKM--QRE---------------VEKLVH-H--FLKKVQNIDGKTAQ 68 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~--~~aL~m--~~e---------------V~~~vp-~--~~~~~~N~~g~Tp~ 68 (243)
+.+|+|| +||||+|++-|+++.++.+- |+.... .+| |++.+. + ...+..|..|+||.
T Consensus 267 ~~~d~dg-~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL 345 (929)
T KOG0510|consen 267 NDEDNDG-CTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL 345 (929)
T ss_pred hcccccC-CchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence 6899999 99999999999987654321 111111 111 555444 1 13566777888998
Q ss_pred HHHHhh-hHH
Q 045342 69 DIFIEQ-HKD 77 (243)
Q Consensus 69 dif~~~-h~~ 77 (243)
.+..++ |.+
T Consensus 346 Hlaa~~gH~~ 355 (929)
T KOG0510|consen 346 HLAAKSGHDR 355 (929)
T ss_pred hhhhhcCHHH
Confidence 887654 544
No 24
>PF13606 Ank_3: Ankyrin repeat
Probab=94.40 E-value=0.017 Score=35.41 Aligned_cols=17 Identities=29% Similarity=0.167 Sum_probs=14.3
Q ss_pred CCCCchhhhhhhccCCcc
Q 045342 16 STKDNILHLAAKLALPTH 33 (243)
Q Consensus 16 ~G~NT~LHLAa~~~~~~~ 33 (243)
+| +||||+|++.++.+.
T Consensus 1 ~G-~T~Lh~A~~~g~~e~ 17 (30)
T PF13606_consen 1 NG-NTPLHLAASNGNIEI 17 (30)
T ss_pred CC-CCHHHHHHHhCCHHH
Confidence 46 999999999987653
No 25
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=94.24 E-value=0.056 Score=56.02 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=15.1
Q ss_pred cccccCCCCCChHHHHHhh
Q 045342 56 LKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~~~ 74 (243)
..+.+|++|.||..+..++
T Consensus 647 din~~d~~G~TpLh~A~~~ 665 (823)
T PLN03192 647 NVDSEDHQGATALQVAMAE 665 (823)
T ss_pred CCCCCCCCCCCHHHHHHHC
Confidence 3578899999999887654
No 26
>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A ....
Probab=94.18 E-value=0.042 Score=37.19 Aligned_cols=44 Identities=20% Similarity=0.170 Sum_probs=25.1
Q ss_pred CCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 18 KDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 18 ~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
|+|+||.|++.++.+.+. .- +++.. ..+..|++|.||.+.....
T Consensus 1 g~t~lh~A~~~g~~~~~~--------~L--l~~~~---din~~d~~g~t~lh~A~~~ 44 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVK--------LL--LEHGA---DINAQDEDGRTPLHYAAKN 44 (54)
T ss_dssp SSBHHHHHHHTT-HHHHH--------HH--HHTTS---GTT-B-TTS--HHHHHHHT
T ss_pred CChHHHHHHHhCCHHHHH--------HH--HHCCC---CCCCCCCCCCCHHHHHHHc
Confidence 499999999988755321 11 22211 2466699999999887653
No 27
>PHA03095 ankyrin-like protein; Provisional
Probab=94.02 E-value=0.082 Score=50.01 Aligned_cols=51 Identities=18% Similarity=-0.004 Sum_probs=27.6
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhh-ccccccccCCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLV-HHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~v-p~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+|.+| +||||+|+..+..... . ++..+ .....+.+|.+|.||.......
T Consensus 216 ~~~d~~g-~tpLh~Aa~~~~~~~~------~------v~~ll~~g~din~~d~~g~TpLh~A~~~ 267 (471)
T PHA03095 216 AATDMLG-NTPLHSMATGSSCKRS------L------VLPLLIAGISINARNRYGQTPLHYAAVF 267 (471)
T ss_pred cccCCCC-CCHHHHHHhcCCchHH------H------HHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 5666666 6777766665542210 0 11111 1123567778888888776553
No 28
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=93.99 E-value=0.048 Score=56.51 Aligned_cols=57 Identities=18% Similarity=0.256 Sum_probs=38.6
Q ss_pred hhhhhhc----cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 3 VYNKFIS----PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 3 ~~~~~~~----~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+.+.|+. ++..|++| +||||+|+..++.+.. .+.+ +. ....+.+|++|.||......
T Consensus 540 ~l~~Ll~~G~d~n~~d~~G-~TpLh~Aa~~g~~~~v------~~Ll----~~---gadin~~d~~G~TpL~~A~~ 600 (823)
T PLN03192 540 LLEELLKAKLDPDIGDSKG-RTPLHIAASKGYEDCV------LVLL----KH---ACNVHIRDANGNTALWNAIS 600 (823)
T ss_pred HHHHHHHCCCCCCCCCCCC-CCHHHHHHHcChHHHH------HHHH----hc---CCCCCCcCCCCCCHHHHHHH
Confidence 4455553 48899999 9999999999886532 1111 11 12357789999999866543
No 29
>PHA02874 ankyrin repeat protein; Provisional
Probab=93.98 E-value=0.057 Score=51.20 Aligned_cols=18 Identities=11% Similarity=0.172 Sum_probs=14.5
Q ss_pred cccccCCCCCChHHHHHh
Q 045342 56 LKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~~ 73 (243)
..+.+|++|+||.++..+
T Consensus 280 d~n~~d~~g~TpL~~A~~ 297 (434)
T PHA02874 280 DISIKDNKGENPIDTAFK 297 (434)
T ss_pred CCCCCCCCCCCHHHHHHH
Confidence 357889999999988754
No 30
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=93.96 E-value=0.069 Score=38.98 Aligned_cols=58 Identities=21% Similarity=0.202 Sum_probs=35.7
Q ss_pred hhhhhhhcccc-ccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 2 DVYNKFISPQL-IDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 2 ~~~~~~~~~~~-~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
++.+.|++... .|. | +||||.|+..++.+.+. +. ++. ....+..|.+|.||.....+.
T Consensus 11 ~~~~~ll~~~~~~~~-~-~~~l~~A~~~~~~~~~~------~L----l~~---g~~~~~~~~~g~t~L~~A~~~ 69 (89)
T PF12796_consen 11 EILKFLLEKGADINL-G-NTALHYAAENGNLEIVK------LL----LEN---GADINSQDKNGNTALHYAAEN 69 (89)
T ss_dssp HHHHHHHHTTSTTTS-S-SBHHHHHHHTTTHHHHH------HH----HHT---TTCTT-BSTTSSBHHHHHHHT
T ss_pred HHHHHHHHCcCCCCC-C-CCHHHHHHHcCCHHHHH------HH----HHh---cccccccCCCCCCHHHHHHHc
Confidence 45666776432 222 7 99999999998754321 11 111 113467779999999887654
No 31
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=93.90 E-value=0.037 Score=48.45 Aligned_cols=43 Identities=23% Similarity=0.122 Sum_probs=31.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhh-ccccccccCCCCCChH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLV-HHFLKKVQNIDGKTAQ 68 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~v-p~~~~~~~N~~g~Tp~ 68 (243)
|.+|+|| .||||-|++.++.++. +..+ .....+.+-++|.||.
T Consensus 91 NtrD~D~-YTpLHRAaYn~h~div--------------~~ll~~gAn~~a~T~~GWTPL 134 (228)
T KOG0512|consen 91 NTRDEDE-YTPLHRAAYNGHLDIV--------------HELLLSGANKEAKTNEGWTPL 134 (228)
T ss_pred ccccccc-ccHHHHHHhcCchHHH--------------HHHHHccCCcccccccCccch
Confidence 7899999 9999999999987642 1111 1123567778888885
No 32
>PHA02878 ankyrin repeat protein; Provisional
Probab=93.83 E-value=0.076 Score=51.03 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=13.7
Q ss_pred ccccCC-CCCchhhhhhhccCCc
Q 045342 11 QLIDES-TKDNILHLAAKLALPT 32 (243)
Q Consensus 11 ~~~D~~-G~NT~LHLAa~~~~~~ 32 (243)
+.+|++ | +||||.|+..++.+
T Consensus 161 n~~~~~~g-~tpLh~A~~~~~~~ 182 (477)
T PHA02878 161 NMKDRHKG-NTALHYATENKDQR 182 (477)
T ss_pred CccCCCCC-CCHHHHHHhCCCHH
Confidence 556666 6 77777777766544
No 33
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=93.67 E-value=0.028 Score=41.09 Aligned_cols=30 Identities=17% Similarity=0.223 Sum_probs=23.2
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCc
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
|+.+.|++. +.+|.+| +||||.|+..++.+
T Consensus 40 ~~~~~Ll~~g~~~~~~~~~g-~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 40 EIVKLLLENGADINSQDKNG-NTALHYAAENGNLE 73 (89)
T ss_dssp HHHHHHHHTTTCTT-BSTTS-SBHHHHHHHTTHHH
T ss_pred HHHHHHHHhcccccccCCCC-CCHHHHHHHcCCHH
Confidence 456666665 6789999 99999999987754
No 34
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=93.54 E-value=0.066 Score=54.45 Aligned_cols=50 Identities=22% Similarity=0.161 Sum_probs=35.9
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+|++| +||||+|++.++.+... +. ++. ....+.+|++|.||..+..+.
T Consensus 109 n~~d~~G-~TpLh~Aa~~g~~eiv~------~L----L~~---Gadvn~~d~~G~TpLh~A~~~ 158 (664)
T PTZ00322 109 NCRDYDG-RTPLHIACANGHVQVVR------VL----LEF---GADPTLLDKDGKTPLELAEEN 158 (664)
T ss_pred CCcCCCC-CcHHHHHHHCCCHHHHH------HH----HHC---CCCCCCCCCCCCCHHHHHHHC
Confidence 7899999 99999999998765321 11 111 123578899999999887654
No 35
>PHA02875 ankyrin repeat protein; Provisional
Probab=93.52 E-value=0.073 Score=49.80 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=11.5
Q ss_pred ccccCCCCCChHHHHHh
Q 045342 57 KKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~ 73 (243)
.+.+|.+|.||......
T Consensus 161 ~~~~d~~g~TpL~~A~~ 177 (413)
T PHA02875 161 LDIEDCCGCTPLIIAMA 177 (413)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 45667778888766554
No 36
>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]
Probab=93.50 E-value=0.12 Score=51.24 Aligned_cols=58 Identities=21% Similarity=0.216 Sum_probs=38.3
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh-hHHHHHH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ-HKDFLEN 81 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~-h~~l~~~ 81 (243)
|.-|.|.||||||.|++.|+....+.+ . |. ..+....|.+|+||.|+.... |-++-+.
T Consensus 160 N~~hpekg~TpLHvAAk~Gq~~Q~ElL------~---vY----GAD~~a~d~~GmtP~~~AR~~gH~~laeR 218 (669)
T KOG0818|consen 160 NFFHPEKGNTPLHVAAKAGQILQAELL------A---VY----GADPGAQDSSGMTPVDYARQGGHHELAER 218 (669)
T ss_pred CCCCcccCCchhHHHHhccchhhhhHH------h---hc----cCCCCCCCCCCCcHHHHHHhcCchHHHHH
Confidence 455666559999999999985432111 0 11 223578899999999998763 5555443
No 37
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.49 E-value=0.082 Score=54.60 Aligned_cols=61 Identities=20% Similarity=0.325 Sum_probs=38.5
Q ss_pred hhhhhhhc----cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 2 DVYNKFIS----PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 2 ~~~~~~~~----~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
|||+-|+- +++||..| ||+||.-+..-..+ +-.-+|..- .. ......|++|.||..+..+.
T Consensus 254 eivrlLl~~gAd~~aqDS~G-NTVLH~lVi~~~~~----My~~~L~~g----a~---~l~~v~N~qgLTPLtLAakl 318 (782)
T KOG3676|consen 254 EIVRLLLAHGADPNAQDSNG-NTVLHMLVIHFVTE----MYDLALELG----AN---ALEHVRNNQGLTPLTLAAKL 318 (782)
T ss_pred HHHHHHHhcCCCCCccccCC-ChHHHHHHHHHHHH----HHHHHHhcC----CC---ccccccccCCCChHHHHHHh
Confidence 45555554 48999999 99999999872211 111122111 00 23467899999998776664
No 38
>PHA02730 ankyrin-like protein; Provisional
Probab=93.30 E-value=0.083 Score=54.15 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=33.4
Q ss_pred cccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhh-ccccccccCCCCCChHHHHHh
Q 045342 12 LIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLV-HHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 12 ~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~v-p~~~~~~~N~~g~Tp~dif~~ 73 (243)
.+|++| +||||.|++.+.....+. ||..+ .....+.+|++|.||.-+...
T Consensus 36 ~kd~~G-~TaLh~A~~~~~~~~~ei-----------vklLLs~GAdin~kD~~G~TPLh~Aa~ 86 (672)
T PHA02730 36 HIDRRG-NNALHCYVSNKCDTDIKI-----------VRLLLSRGVERLCRNNEGLTPLGVYSK 86 (672)
T ss_pred hcCCCC-CcHHHHHHHcCCcCcHHH-----------HHHHHhCCCCCcccCCCCCChHHHHHH
Confidence 789999 999999999864111111 22222 122357899999999987654
No 39
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=93.16 E-value=0.12 Score=53.74 Aligned_cols=57 Identities=11% Similarity=0.115 Sum_probs=34.9
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc-cccccccCCCCCChHHHH
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH-HFLKKVQNIDGKTAQDIF 71 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp-~~~~~~~N~~g~Tp~dif 71 (243)
++.+.|++. +.+|++| +||||.|+..++.+. .. |+..+. ....+.+|++|+||....
T Consensus 193 eIVklLLe~GADVN~kD~~G-~TPLH~Aa~~g~~~~-eI-----------VklLLe~GADVN~kD~~G~TPLh~A 254 (764)
T PHA02716 193 DILEWLCNNGVNVNLQNNHL-ITPLHTYLITGNVCA-SV-----------IKKIIELGGDMDMKCVNGMSPIMTY 254 (764)
T ss_pred HHHHHHHHcCCCCCCCCCCC-CCHHHHHHHcCCCCH-HH-----------HHHHHHcCCCCCCCCCCCCCHHHHH
Confidence 455666654 6788888 888888888764310 00 222221 123577889999998654
No 40
>PHA02798 ankyrin-like protein; Provisional
Probab=93.13 E-value=0.11 Score=50.36 Aligned_cols=59 Identities=12% Similarity=0.140 Sum_probs=31.8
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc-cccccccCCCCCChHHHHHh
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH-HFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp-~~~~~~~N~~g~Tp~dif~~ 73 (243)
+.+.|+.. +.+|++| +||||.|+..+....... ++..+. ....+.+|++|.||.....+
T Consensus 91 iv~~Ll~~GadiN~~d~~G-~TpLh~a~~~~~~~~~~i-----------v~~Ll~~Gadvn~~d~~g~tpL~~a~~ 154 (489)
T PHA02798 91 IVKILIENGADINKKNSDG-ETPLYCLLSNGYINNLEI-----------LLFMIENGADTTLLDKDGFTMLQVYLQ 154 (489)
T ss_pred HHHHHHHCCCCCCCCCCCc-CcHHHHHHHcCCcChHHH-----------HHHHHHcCCCccccCCCCCcHHHHHHH
Confidence 44455554 6778888 888888887653221111 111111 11245667777777766554
No 41
>PHA02874 ankyrin repeat protein; Provisional
Probab=92.88 E-value=0.11 Score=49.31 Aligned_cols=16 Identities=19% Similarity=0.281 Sum_probs=10.2
Q ss_pred cccCCCCCChHHHHHh
Q 045342 58 KVQNIDGKTAQDIFIE 73 (243)
Q Consensus 58 ~~~N~~g~Tp~dif~~ 73 (243)
+.+|.+|.||.....+
T Consensus 184 n~~~~~g~tpL~~A~~ 199 (434)
T PHA02874 184 NVKDNNGESPLHNAAE 199 (434)
T ss_pred CCCCCCCCCHHHHHHH
Confidence 4566677777666554
No 42
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=92.84 E-value=0.064 Score=54.64 Aligned_cols=62 Identities=18% Similarity=0.082 Sum_probs=34.5
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchh-hh---hh-hccccccccCCCCCChHHHHHhh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQRE-VE---KL-VHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~e-V~---~~-vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
++.+|+.| |||||+|+..++...... .-..++.+. ++ .. -+....+.+|++|.||.++..+.
T Consensus 201 in~~d~~g-~T~Lh~A~~~~~~~~~~~--~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~ 267 (743)
T TIGR00870 201 ILTADSLG-NTLLHLLVMENEFKAEYE--ELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKE 267 (743)
T ss_pred hhhHhhhh-hHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhc
Confidence 36899999 999999998763221000 001111111 11 10 11112367899999998876553
No 43
>PHA02716 CPXV016; CPX019; EVM010; Provisional
Probab=92.53 E-value=0.13 Score=53.43 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=36.9
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc-cccccccCCCCCChHHHHHhhh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH-HFLKKVQNIDGKTAQDIFIEQH 75 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp-~~~~~~~N~~g~Tp~dif~~~h 75 (243)
.+.+|.+| +||||.|+..++........ ++..+. ....+.+|++|+||..+..++.
T Consensus 490 vN~~D~~G-~TPLh~Aa~~g~~~~v~~e~---------~k~LL~~GADIN~~d~~G~TPLh~A~~~g 546 (764)
T PHA02716 490 NAVCETSG-MTPLHVSIISHTNANIVMDS---------FVYLLSIQYNINIPTKNGVTPLMLTMRNN 546 (764)
T ss_pred ccccCCCC-CCHHHHHHHcCCccchhHHH---------HHHHHhCCCCCcccCCCCCCHHHHHHHcC
Confidence 36789999 99999999987643210000 111111 1235789999999999887644
No 44
>PHA02791 ankyrin-like protein; Provisional
Probab=92.35 E-value=0.12 Score=47.35 Aligned_cols=20 Identities=15% Similarity=0.097 Sum_probs=10.6
Q ss_pred ccccCCCCCchhhhhhhccCC
Q 045342 11 QLIDESTKDNILHLAAKLALP 31 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~ 31 (243)
+.+|++| +||||+|+..++.
T Consensus 88 n~~d~~G-~TpLh~Aa~~g~~ 107 (284)
T PHA02791 88 SQFDDKG-NTALYYAVDSGNM 107 (284)
T ss_pred CCCCCCC-CCHHHHHHHcCCH
Confidence 3445555 5555555555443
No 45
>PHA02791 ankyrin-like protein; Provisional
Probab=92.33 E-value=0.11 Score=47.58 Aligned_cols=31 Identities=13% Similarity=-0.123 Sum_probs=23.7
Q ss_pred hhhhhhhcc--ccccCCCCCchhhhhhhccCCcc
Q 045342 2 DVYNKFISP--QLIDESTKDNILHLAAKLALPTH 33 (243)
Q Consensus 2 ~~~~~~~~~--~~~D~~G~NT~LHLAa~~~~~~~ 33 (243)
|+.+-|++. +.+|++| +||||.|+..++.+.
T Consensus 13 ~~~~~Lis~~a~~~D~~G-~TpLh~Aa~~g~~ei 45 (284)
T PHA02791 13 QLKSFLSSKDAFKADVHG-HSALYYAIADNNVRL 45 (284)
T ss_pred HHHHHHHhCCCCCCCCCC-CcHHHHHHHcCCHHH
Confidence 445556664 6789999 999999999887654
No 46
>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]
Probab=92.25 E-value=0.082 Score=46.56 Aligned_cols=17 Identities=12% Similarity=-0.015 Sum_probs=10.2
Q ss_pred cccccCCCCCChHHHHH
Q 045342 56 LKKVQNIDGKTAQDIFI 72 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~ 72 (243)
..+..|+.|.|+.....
T Consensus 98 dvna~tn~G~T~LHyAa 114 (226)
T KOG4412|consen 98 DVNATTNGGQTCLHYAA 114 (226)
T ss_pred CcceecCCCcceehhhh
Confidence 45666666666655443
No 47
>PHA02743 Viral ankyrin protein; Provisional
Probab=91.85 E-value=0.25 Score=41.04 Aligned_cols=18 Identities=22% Similarity=0.032 Sum_probs=10.4
Q ss_pred cccccCCCCCChHHHHHh
Q 045342 56 LKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 56 ~~~~~N~~g~Tp~dif~~ 73 (243)
..+.+|++|.||..+...
T Consensus 120 d~~~~d~~g~tpL~~A~~ 137 (166)
T PHA02743 120 NLGAINYQHETAYHIAYK 137 (166)
T ss_pred CccCcCCCCCCHHHHHHH
Confidence 345566666666655543
No 48
>PHA02878 ankyrin repeat protein; Provisional
Probab=91.83 E-value=0.17 Score=48.73 Aligned_cols=58 Identities=19% Similarity=0.165 Sum_probs=40.8
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhh-ccccccccCCCCCChHHHHHhh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLV-HHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~v-p~~~~~~~N~~g~Tp~dif~~~ 74 (243)
++.+.|+.. +.+|.+| +||||+|++.++.+. ++..+ .....+.+|++|.||.......
T Consensus 182 ~iv~~Ll~~gad~n~~d~~g-~tpLh~A~~~~~~~i--------------v~~Ll~~ga~in~~d~~g~TpLh~A~~~ 244 (477)
T PHA02878 182 RLTELLLSYGANVNIPDKTN-NSPLHHAVKHYNKPI--------------VHILLENGASTDARDKCGNTPLHISVGY 244 (477)
T ss_pred HHHHHHHHCCCCCCCcCCCC-CCHHHHHHHhCCHHH--------------HHHHHHcCCCCCCCCCCCCCHHHHHHHh
Confidence 455566654 6789999 999999999877542 22222 2234678899999999887653
No 49
>PHA02876 ankyrin repeat protein; Provisional
Probab=91.82 E-value=0.16 Score=51.16 Aligned_cols=57 Identities=11% Similarity=0.077 Sum_probs=36.5
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+.+-|+.. +.+|.+| +||||+|++.++.+.+. +.++.. ...+..+.+|.||.....+
T Consensus 160 i~k~Ll~~Gadvn~~d~~G-~TpLh~Aa~~G~~~iv~------~LL~~G-------ad~n~~~~~g~t~L~~A~~ 220 (682)
T PHA02876 160 IAEMLLEGGADVNAKDIYC-ITPIHYAAERGNAKMVN------LLLSYG-------ADVNIIALDDLSVLECAVD 220 (682)
T ss_pred HHHHHHhCCCCCCCCCCCC-CCHHHHHHHCCCHHHHH------HHHHCC-------CCcCccCCCCCCHHHHHHH
Confidence 34444443 6789999 99999999998865321 111111 1235667788888776654
No 50
>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A.
Probab=91.73 E-value=0.082 Score=36.40 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=12.4
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLA 25 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLA 25 (243)
++.+.|+.. +.+|++| .||||+|
T Consensus 30 ~~v~~Ll~~g~d~~~~d~~G-~Tpl~~A 56 (56)
T PF13857_consen 30 EVVRLLLQNGADPNAKDKDG-QTPLHYA 56 (56)
T ss_dssp HHHHHHHHCT--TT---TTS---HHHH-
T ss_pred HHHHHHHHCcCCCCCCcCCC-CCHHHhC
Confidence 455666643 7899999 9999998
No 51
>PHA02876 ankyrin repeat protein; Provisional
Probab=91.57 E-value=0.2 Score=50.45 Aligned_cols=17 Identities=24% Similarity=0.175 Sum_probs=11.6
Q ss_pred ccccCCCCCChHHHHHh
Q 045342 57 KKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~ 73 (243)
.+.+|.+|.||..+..+
T Consensus 469 ~n~~d~~g~tpl~~a~~ 485 (682)
T PHA02876 469 VNAINIQNQYPLLIALE 485 (682)
T ss_pred CCCCCCCCCCHHHHHHH
Confidence 56777788888766543
No 52
>PHA02859 ankyrin repeat protein; Provisional
Probab=91.51 E-value=0.34 Score=41.86 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=33.8
Q ss_pred hhhhhhhcc----ccccC-CCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHH
Q 045342 2 DVYNKFISP----QLIDE-STKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFI 72 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~-~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~ 72 (243)
++.+.|+.. +.+|+ +| .||||+|+..........+ .+. ++. ....+.+|++|.||.....
T Consensus 67 eiv~~Ll~~gadvn~~~~~~g-~TpLh~a~~~~~~~~~eiv---~~L----l~~---gadin~~d~~G~TpLh~a~ 131 (209)
T PHA02859 67 EILKFLIENGADVNFKTRDNN-LSALHHYLSFNKNVEPEIL---KIL----IDS---GSSITEEDEDGKNLLHMYM 131 (209)
T ss_pred HHHHHHHHCCCCCCccCCCCC-CCHHHHHHHhCccccHHHH---HHH----HHC---CCCCCCcCCCCCCHHHHHH
Confidence 455666654 67764 67 9999998865431111111 111 111 1234678888888887654
No 53
>PHA02884 ankyrin repeat protein; Provisional
Probab=91.48 E-value=0.2 Score=46.56 Aligned_cols=30 Identities=17% Similarity=0.156 Sum_probs=20.5
Q ss_pred hhhhhhhcc----ccc----cCCCCCchhhhhhhccCCc
Q 045342 2 DVYNKFISP----QLI----DESTKDNILHLAAKLALPT 32 (243)
Q Consensus 2 ~~~~~~~~~----~~~----D~~G~NT~LHLAa~~~~~~ 32 (243)
++.+.|+.. +.+ |++| .||||+|+..++.+
T Consensus 47 eivk~LL~~GAdiN~~~~~sd~~g-~TpLh~Aa~~~~~e 84 (300)
T PHA02884 47 DIIDAILKLGADPEAPFPLSENSK-TNPLIYAIDCDNDD 84 (300)
T ss_pred HHHHHHHHCCCCccccCcccCCCC-CCHHHHHHHcCCHH
Confidence 455666664 555 4678 89999998777654
No 54
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=91.40 E-value=0.14 Score=50.60 Aligned_cols=49 Identities=16% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+|+.|..| ||+||.++..|+.+.+. -.+.-.-+-.+|..|+||.-....
T Consensus 176 vn~ks~kG-NTALH~caEsG~vdivq--------------~Ll~~ga~i~~d~~GmtPL~~Aa~ 224 (615)
T KOG0508|consen 176 VNAKSYKG-NTALHDCAESGSVDIVQ--------------LLLKHGAKIDVDGHGMTPLLLAAV 224 (615)
T ss_pred cchhcccC-chHHHhhhhcccHHHHH--------------HHHhCCceeeecCCCCchHHHHhh
Confidence 47889999 99999999988766421 122222345677889999755443
No 55
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=91.39 E-value=0.11 Score=51.55 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=31.8
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQ 68 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~ 68 (243)
...|..| |||||||+.+++... +++.|. .......+|++|.+|.
T Consensus 49 d~~D~~g-~TpLhlAV~Lg~~~~------a~~Ll~-------a~Adv~~kN~~gWs~L 92 (560)
T KOG0522|consen 49 DRRDPPG-RTPLHLAVRLGHVEA------ARILLS-------AGADVSIKNNEGWSPL 92 (560)
T ss_pred ccccCCC-CccHHHHHHhcCHHH------HHHHHh-------cCCCccccccccccHH
Confidence 5789999 999999999998643 222222 1123577999999986
No 56
>PHA02792 ankyrin-like protein; Provisional
Probab=91.33 E-value=0.25 Score=50.35 Aligned_cols=49 Identities=14% Similarity=0.101 Sum_probs=29.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+.+|++| +||||.|++.++.+... +. ++. ....+.+|++|+||......
T Consensus 404 N~kD~~G-~TPLh~Aa~~~n~eive------lL----Ls~---GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 404 NKIDKHG-RSILYYCIESHSVSLVE------WL----IDN---GADINITTKYGSTCIGICVI 452 (631)
T ss_pred ccccccC-cchHHHHHHcCCHHHHH------HH----HHC---CCCCCCcCCCCCCHHHHHHH
Confidence 6777777 88888887765533211 10 111 12346778888888887643
No 57
>PHA02917 ankyrin-like protein; Provisional
Probab=91.17 E-value=0.23 Score=50.73 Aligned_cols=57 Identities=21% Similarity=0.258 Sum_probs=39.8
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhh-ccccccccCCCCCChHHHHHh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLV-HHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~v-p~~~~~~~N~~g~Tp~dif~~ 73 (243)
++.+-|+++ +.+|++| +||||.|+..++.+. ++..+ .....+.+|+.|.||..+...
T Consensus 433 ~~v~~Ll~~GAdIN~kd~~G-~TpLh~Aa~~~~~~~--------------v~~Ll~~GAdin~~d~~G~T~L~~A~~ 494 (661)
T PHA02917 433 STINICLPYLKDINMIDKRG-ETLLHKAVRYNKQSL--------------VSLLLESGSDVNIRSNNGYTCIAIAIN 494 (661)
T ss_pred HHHHHHHHCCCCCCCCCCCC-cCHHHHHHHcCCHHH--------------HHHHHHCcCCCCCCCCCCCCHHHHHHH
Confidence 345667765 7899999 999999998765332 11111 112357889999999998864
No 58
>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]
Probab=91.08 E-value=0.18 Score=50.82 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=32.8
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
+.+|++| -|+||+|++.++.-. .+..+. + -...+.+|++|+||.-....
T Consensus 139 t~~D~~G-~~~lHla~~~~~~~~------vayll~---~----~~d~d~~D~~grTpLmwAay 187 (600)
T KOG0509|consen 139 TLKDKQG-LTPLHLAAQFGHTAL------VAYLLS---K----GADIDLRDNNGRTPLMWAAY 187 (600)
T ss_pred ceecCCC-CcHHHHHHHhCchHH------HHHHHH---h----cccCCCcCCCCCCHHHHHHH
Confidence 7888898 899999998887532 222221 1 13467888888888765543
No 59
>PHA02875 ankyrin repeat protein; Provisional
Probab=90.42 E-value=0.27 Score=45.95 Aligned_cols=18 Identities=11% Similarity=0.141 Sum_probs=13.8
Q ss_pred ccccCCCCCChHHHHHhh
Q 045342 57 KKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~~ 74 (243)
.+..|.+|.||.......
T Consensus 128 ~~~~~~~g~tpLh~A~~~ 145 (413)
T PHA02875 128 PDIPNTDKFSPLHLAVMM 145 (413)
T ss_pred CCCCCCCCCCHHHHHHHc
Confidence 467788999998877653
No 60
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=90.15 E-value=0.31 Score=39.46 Aligned_cols=60 Identities=22% Similarity=0.116 Sum_probs=36.2
Q ss_pred ccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 9 SPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 9 ~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
.++.+|.+| +|+||+|+..+....- ...-..++ ++...+....+..|.+|.||.......
T Consensus 98 ~~~~~~~~g-~t~l~~a~~~~~~~~~-~~~~~~~l----l~~g~~~~~~~~~~~~g~tpl~~A~~~ 157 (235)
T COG0666 98 DVNAKDADG-DTPLHLAALNGNPPEG-NIEVAKLL----LEAGADLDVNNLRDEDGNTPLHWAALN 157 (235)
T ss_pred CcccccCCC-CcHHHHHHhcCCcccc-hHHHHHHH----HHcCCCCCCccccCCCCCchhHHHHHc
Confidence 447899999 9999999999873110 00001111 111110124567799999998886543
No 61
>PHA02917 ankyrin-like protein; Provisional
Probab=90.09 E-value=0.54 Score=48.04 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=33.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhcc-ccccccCCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHH-FLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~-~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+|++| +||||.|+..++...... |+..+.. ...+.+|++|.||.......
T Consensus 26 ~~~d~~g-~t~Lh~a~~~~~~~~~~~-----------v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~ 78 (661)
T PHA02917 26 DTRNQFK-NNALHAYLFNEHCNNVEV-----------VKLLLDSGTNPLHKNWRQLTPLEEYTNS 78 (661)
T ss_pred cccCCCC-CcHHHHHHHhhhcCcHHH-----------HHHHHHCCCCccccCCCCCCHHHHHHHc
Confidence 5679999 999999877654221111 2222211 13467889999998876654
No 62
>PHA02730 ankyrin-like protein; Provisional
Probab=89.09 E-value=0.6 Score=47.99 Aligned_cols=57 Identities=14% Similarity=0.029 Sum_probs=37.8
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCC-CCCChHHHHHh
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNI-DGKTAQDIFIE 73 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~-~g~Tp~dif~~ 73 (243)
+.|-||+. +.+|++| +||||.|+..++.+.+. +.++ .....+.+|+ .|.||......
T Consensus 444 ivk~LIs~GADINakD~~G-~TPLh~Aa~~~~~eive------~LI~-------~GAdIN~~d~~~g~TaL~~Aa~ 505 (672)
T PHA02730 444 VFDILSKYMDDIDMIDNEN-KTLLYYAVDVNNIQFAR------RLLE-------YGASVNTTSRSIINTAIQKSSY 505 (672)
T ss_pred HHHHHHhcccchhccCCCC-CCHHHHHHHhCCHHHHH------HHHH-------CCCCCCCCCCcCCcCHHHHHHH
Confidence 45667765 6899999 99999999987643211 1111 1123467776 59999987654
No 63
>PHA03100 ankyrin repeat protein; Provisional
Probab=88.90 E-value=0.41 Score=45.44 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=13.2
Q ss_pred ccccCCCCCChHHHHHhh
Q 045342 57 KKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~~ 74 (243)
.+.+|.+|.||.......
T Consensus 169 in~~d~~g~tpL~~A~~~ 186 (480)
T PHA03100 169 INAKNRYGYTPLHIAVEK 186 (480)
T ss_pred cccccCCCCCHHHHHHHh
Confidence 456777899998776654
No 64
>PHA02989 ankyrin repeat protein; Provisional
Probab=88.80 E-value=0.73 Score=44.63 Aligned_cols=28 Identities=4% Similarity=-0.171 Sum_probs=19.1
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccC
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLAL 30 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~ 30 (243)
++.+-|+.. +.+|++| .||||.|+..+.
T Consensus 89 ~iv~~Ll~~Gadin~~d~~g-~tpL~~a~~~~~ 120 (494)
T PHA02989 89 KIVKLLLKFGADINLKTFNG-VSPIVCFIYNSN 120 (494)
T ss_pred HHHHHHHHCCCCCCCCCCCC-CcHHHHHHHhcc
Confidence 345556554 6788888 888888876543
No 65
>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]
Probab=88.54 E-value=0.25 Score=46.40 Aligned_cols=52 Identities=21% Similarity=0.186 Sum_probs=32.2
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChH
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQ 68 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~ 68 (243)
|.|-|+++ |..+- |.+|||||||..|+.++... .+++ ..+.+..|+.|.||.
T Consensus 49 ivemll~rgarvn~tnm-gddtplhlaaahghrdivqk------ll~~-------kadvnavnehgntpl 104 (448)
T KOG0195|consen 49 IVEMLLSRGARVNSTNM-GDDTPLHLAAAHGHRDIVQK------LLSR-------KADVNAVNEHGNTPL 104 (448)
T ss_pred HHHHHHhcccccccccC-CCCcchhhhhhcccHHHHHH------HHHH-------hcccchhhccCCCch
Confidence 45666666 33333 33888888888887553211 1111 234689999999996
No 66
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.09 E-value=0.41 Score=47.60 Aligned_cols=51 Identities=25% Similarity=0.152 Sum_probs=36.2
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
++.+|.|| -||||-||.-+..+--. +. |+ .-....+++..|.||.|++.++
T Consensus 224 ~~~~D~dg-WtPlHAAA~Wg~~~~~e------lL----~~---~ga~~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 224 VNIKDYDG-WTPLHAAAHWGQEDACE------LL----VE---HGADMDAKTKMGETPLDVADEE 274 (527)
T ss_pred cccccccC-CCcccHHHHhhhHhHHH------HH----HH---hhcccchhhhcCCCCccchhhh
Confidence 47899999 99999999988754211 11 11 1223578899999999998873
No 67
>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]
Probab=88.02 E-value=0.41 Score=38.70 Aligned_cols=50 Identities=26% Similarity=0.151 Sum_probs=33.5
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
+.+|++| |||||.|+..++.... .+.+. .....+.+|..|.|+.+.-...
T Consensus 141 ~~~~~~g-~tpl~~A~~~~~~~~~------~~ll~-------~~~~~~~~~~~g~t~l~~a~~~ 190 (235)
T COG0666 141 NLRDEDG-NTPLHWAALNGDADIV------ELLLE-------AGADPNSRNSYGVTALDPAAKN 190 (235)
T ss_pred cccCCCC-CchhHHHHHcCchHHH------HHHHh-------cCCCCcccccCCCcchhhhccc
Confidence 4569999 9999999999886321 11111 1223455689999998886653
No 68
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=87.50 E-value=0.25 Score=47.49 Aligned_cols=48 Identities=25% Similarity=0.184 Sum_probs=32.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIF 71 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif 71 (243)
|.-|.+| ||+||+|+..++-..+.. | + +. --+..+..|+-|.||.-+-
T Consensus 262 NlaDsNG-NTALHYsVSHaNF~VV~~-----L-L----DS--gvC~VD~qNrAGYtpiMLa 309 (452)
T KOG0514|consen 262 NLADSNG-NTALHYAVSHANFDVVSI-----L-L----DS--GVCDVDQQNRAGYTPVMLA 309 (452)
T ss_pred hhhcCCC-CeeeeeeecccchHHHHH-----H-h----cc--CcccccccccccccHHHHH
Confidence 7889999 999999998877543211 1 1 11 1123577889999997553
No 69
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=86.31 E-value=0.79 Score=33.62 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=29.7
Q ss_pred cccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 12 LIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 12 ~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
..|++| +||||.|++.++.+....+ +++.. ..+.++..|.||.......
T Consensus 2 ~~~~~g-~t~l~~a~~~~~~~~i~~l----------i~~~~---~~~~~~~~g~~~l~~a~~~ 50 (126)
T cd00204 2 ARDEDG-RTPLHLAASNGHLEVVKLL----------LENGA---DVNAKDNDGRTPLHLAAKN 50 (126)
T ss_pred CcCcCC-CCHHHHHHHcCcHHHHHHH----------HHcCC---CCCccCCCCCcHHHHHHHc
Confidence 467889 9999999998775422111 11111 1156667788887665543
No 70
>PHA02884 ankyrin repeat protein; Provisional
Probab=85.65 E-value=0.86 Score=42.33 Aligned_cols=22 Identities=18% Similarity=0.128 Sum_probs=12.9
Q ss_pred ccccCCCCCchhhhhhhccCCc
Q 045342 11 QLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
..+|++|.+++||.|++.++.+
T Consensus 26 ~~~d~~~~~~lL~~A~~~~~~e 47 (300)
T PHA02884 26 KKKNKICIANILYSSIKFHYTD 47 (300)
T ss_pred hccCcCCCCHHHHHHHHcCCHH
Confidence 3566666555666666655544
No 71
>KOG0514 consensus Ankyrin repeat protein [General function prediction only]
Probab=85.15 E-value=0.72 Score=44.47 Aligned_cols=54 Identities=24% Similarity=0.338 Sum_probs=39.5
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh-hHH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ-HKD 77 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~-h~~ 77 (243)
|.||+|| -|+|..|+..|+.++.. |.+ .+|....-.-|.||-|+.-|.-+. |++
T Consensus 367 NiQDdDG-STALMCA~EHGhkEivk------lLL------A~p~cd~sLtD~DgSTAl~IAleagh~e 421 (452)
T KOG0514|consen 367 NIQDDDG-STALMCAAEHGHKEIVK------LLL------AVPSCDISLTDVDGSTALSIALEAGHRE 421 (452)
T ss_pred ccccCCc-cHHHhhhhhhChHHHHH------HHh------ccCcccceeecCCCchhhhhHHhcCchH
Confidence 7899999 99999999888855321 111 257777778899999999887653 554
No 72
>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.
Probab=84.87 E-value=1.3 Score=32.53 Aligned_cols=21 Identities=33% Similarity=0.243 Sum_probs=15.1
Q ss_pred ccccCCCCCchhhhhhhccCCc
Q 045342 11 QLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
+..|.+| +|+||.|+..+..+
T Consensus 34 ~~~~~~g-~~~l~~a~~~~~~~ 54 (126)
T cd00204 34 NAKDNDG-RTPLHLAAKNGHLE 54 (126)
T ss_pred CccCCCC-CcHHHHHHHcCCHH
Confidence 4567777 88888888776643
No 73
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=79.95 E-value=1.4 Score=45.80 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=14.1
Q ss_pred ccccCCCCCChHHHHHh
Q 045342 57 KKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 57 ~~~~N~~g~Tp~dif~~ 73 (243)
..++|+.++|+.|+..+
T Consensus 141 p~i~nns~~t~ldlA~q 157 (854)
T KOG0507|consen 141 PFIRNNSKETVLDLASR 157 (854)
T ss_pred ccccCcccccHHHHHHH
Confidence 36789999999999765
No 74
>PHA02795 ankyrin-like protein; Provisional
Probab=77.39 E-value=1.5 Score=42.89 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=22.9
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccC
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLAL 30 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~ 30 (243)
++.+.|++. +.+|++| +||||.|+..++
T Consensus 235 eiVelLL~~GAdIN~~d~~G-~TpLh~Aa~~g~ 266 (437)
T PHA02795 235 DLVSWLLENGANVNAVMSNG-YTCLDVAVDRGS 266 (437)
T ss_pred HHHHHHHHCCCCCCCcCCCC-CCHHHHHHHcCC
Confidence 456666665 7899999 999999999875
No 75
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=76.55 E-value=2.8 Score=42.87 Aligned_cols=48 Identities=15% Similarity=0.016 Sum_probs=28.6
Q ss_pred cccccCCCCCchhh-hhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhhh
Q 045342 10 PQLIDESTKDNILH-LAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQH 75 (243)
Q Consensus 10 ~~~~D~~G~NT~LH-LAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~h 75 (243)
+|..|..| +|||| .|+..++.+. ++... .+ ..+|+.|+||.-...+.+
T Consensus 45 in~~d~~G-~t~Lh~~A~~~~~~ei--------------v~lLl-~~--g~~~~~G~T~Lh~A~~~~ 93 (743)
T TIGR00870 45 INCPDRLG-RSALFVAAIENENLEL--------------TELLL-NL--SCRGAVGDTLLHAISLEY 93 (743)
T ss_pred CCCcCccc-hhHHHHHHHhcChHHH--------------HHHHH-hC--CCCCCcChHHHHHHHhcc
Confidence 35688899 99999 5555444221 11111 00 116888999988776643
No 76
>PHA02792 ankyrin-like protein; Provisional
Probab=76.38 E-value=2.5 Score=43.29 Aligned_cols=54 Identities=7% Similarity=-0.002 Sum_probs=31.1
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccc--cccccCCCCCChHHHHHh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHF--LKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~--~~~~~N~~g~Tp~dif~~ 73 (243)
+.+|+.| +||||.|+.....+++ -..+||-+.+-.+ ..+.+++.|.||.....+
T Consensus 169 ~~~~~~g-~t~L~~~i~~~s~~~~--------~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~ 224 (631)
T PHA02792 169 DYDDRMG-KTVLYYYIITRSQDGY--------ATSLDVINYLISHEKEMRYYTYREHTTLYYYVD 224 (631)
T ss_pred ccCCCCC-CchHHHHHhhCCcccc--------cCCHHHHHHHHhCCCCcCccCCCCChHHHHHHH
Confidence 4788899 9999999997732221 1112322222222 234466778888755544
No 77
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=75.55 E-value=2.6 Score=45.81 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=13.0
Q ss_pred ccccCCCCCchhhhhhhccCCc
Q 045342 11 QLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
+..|+.| .||||.|+..++.+
T Consensus 567 ~ak~~~G-~TPLH~Aa~~G~~~ 587 (1143)
T KOG4177|consen 567 NAKDKLG-YTPLHQAAQQGHND 587 (1143)
T ss_pred cccCCCC-CChhhHHHHcChHH
Confidence 4566666 66666666666543
No 78
>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.92 E-value=1.9 Score=43.03 Aligned_cols=23 Identities=22% Similarity=0.082 Sum_probs=19.5
Q ss_pred ccccCCCCCchhhhhhhccCCcch
Q 045342 11 QLIDESTKDNILHLAAKLALPTHL 34 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~ 34 (243)
|.+|++| |||||-|+--++..+.
T Consensus 100 n~~d~e~-wtPlhaaascg~~~i~ 122 (527)
T KOG0505|consen 100 NAQDNEG-WTPLHAAASCGYLNIV 122 (527)
T ss_pred ccccccc-CCcchhhcccccHHHH
Confidence 7899999 9999999988876653
No 79
>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]
Probab=72.93 E-value=3.1 Score=45.23 Aligned_cols=22 Identities=18% Similarity=0.066 Sum_probs=19.1
Q ss_pred ccccCCCCCchhhhhhhccCCcc
Q 045342 11 QLIDESTKDNILHLAAKLALPTH 33 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~ 33 (243)
+.+++.| +||||.|+..++.+.
T Consensus 534 ~~~~~r~-~TpLh~A~~~g~v~~ 555 (1143)
T KOG4177|consen 534 DLRTGRG-YTPLHVAVHYGNVDL 555 (1143)
T ss_pred ehhcccc-cchHHHHHhcCCchH
Confidence 5788899 999999999998764
No 80
>smart00248 ANK ankyrin repeats. Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.
Probab=72.14 E-value=2 Score=22.69 Aligned_cols=16 Identities=31% Similarity=0.191 Sum_probs=12.9
Q ss_pred CCCCchhhhhhhccCCc
Q 045342 16 STKDNILHLAAKLALPT 32 (243)
Q Consensus 16 ~G~NT~LHLAa~~~~~~ 32 (243)
+| +|+||+|+..++.+
T Consensus 1 ~~-~~~l~~~~~~~~~~ 16 (30)
T smart00248 1 DG-RTPLHLAAENGNLE 16 (30)
T ss_pred CC-CCHHHHHHHcCCHH
Confidence 35 99999999987654
No 81
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=70.02 E-value=3.1 Score=44.12 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=33.1
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
..||++-|-||||-|.++|+.+..| +.+... .-.+.+|+||..|.|...+
T Consensus 79 ~vqD~ESG~taLHRaiyyG~idca~------lLL~~g-------~SL~i~Dkeglsplq~~~r 128 (1267)
T KOG0783|consen 79 FVQDEESGYTALHRAIYYGNIDCAS------LLLSKG-------RSLRIKDKEGLSPLQFLSR 128 (1267)
T ss_pred eeccccccchHhhHhhhhchHHHHH------HHHhcC-------CceEEecccCCCHHHHHhh
Confidence 5788886688888888888766432 222211 1247788888888877665
No 82
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=67.22 E-value=3 Score=42.57 Aligned_cols=31 Identities=19% Similarity=0.238 Sum_probs=24.4
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcc
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTH 33 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~ 33 (243)
++.+.|+.. +.+|++| +||||+|+..++.+.
T Consensus 129 eiv~~LL~~Gadvn~~d~~G-~TpLh~A~~~g~~~i 163 (664)
T PTZ00322 129 QVVRVLLEFGADPTLLDKDG-KTPLELAEENGFREV 163 (664)
T ss_pred HHHHHHHHCCCCCCCCCCCC-CCHHHHHHHCCcHHH
Confidence 455666654 6899999 999999999887653
No 83
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=65.70 E-value=3.2 Score=41.94 Aligned_cols=28 Identities=21% Similarity=0.108 Sum_probs=21.9
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccC
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLAL 30 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~ 30 (243)
||++-||-. |..|.|| -||||.||.-.+
T Consensus 597 eIVkFLi~~ganVNa~DSdG-WTPLHCAASCNn 628 (752)
T KOG0515|consen 597 EIVKFLIEFGANVNAADSDG-WTPLHCAASCNN 628 (752)
T ss_pred HHHHHHHhcCCcccCccCCC-CchhhhhhhcCc
Confidence 456666644 8999999 999999997544
No 84
>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]
Probab=64.72 E-value=12 Score=33.00 Aligned_cols=17 Identities=29% Similarity=0.126 Sum_probs=13.0
Q ss_pred cccCCCCCChHHHHHhh
Q 045342 58 KVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 58 ~~~N~~g~Tp~dif~~~ 74 (243)
..+|+.+.||.++..+.
T Consensus 192 g~~nn~eeta~~iARRT 208 (228)
T KOG0512|consen 192 GLKNNLEETAFDIARRT 208 (228)
T ss_pred hhhcCccchHHHHHHHh
Confidence 56788888998887654
No 85
>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]
Probab=58.37 E-value=6.8 Score=40.03 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=12.6
Q ss_pred cccCCCCCChHHHHHhh
Q 045342 58 KVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 58 ~~~N~~g~Tp~dif~~~ 74 (243)
..-|.+|+||.+-.++.
T Consensus 961 ~ktd~kg~tp~eraqqa 977 (1004)
T KOG0782|consen 961 RKTDSKGKTPQERAQQA 977 (1004)
T ss_pred eecccCCCChHHHHHhc
Confidence 34578999998877653
No 86
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=57.85 E-value=6.5 Score=40.10 Aligned_cols=46 Identities=22% Similarity=0.186 Sum_probs=29.6
Q ss_pred cccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 12 LIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 12 ~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
-.|.|| .|+||||+..++...- -| +-|- ..+...+|..|.|+ +|+.
T Consensus 656 ~~~~~g-rt~LHLa~~~gnVvl~------QL-LiWy------g~dv~~rda~g~t~--l~ya 701 (749)
T KOG0705|consen 656 CGEGDG-RTALHLAARKGNVVLA------QL-LIWY------GVDVMARDAHGRTA--LFYA 701 (749)
T ss_pred ccCCCC-cchhhhhhhhcchhHH------HH-HHHh------CccceecccCCchh--hhhH
Confidence 346677 9999999999874311 11 1122 22357889999998 4544
No 87
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=54.76 E-value=87 Score=27.10 Aligned_cols=15 Identities=40% Similarity=0.590 Sum_probs=11.8
Q ss_pred CCCCChHHHHHhhhHH
Q 045342 62 IDGKTAQDIFIEQHKD 77 (243)
Q Consensus 62 ~~g~Tp~dif~~~h~~ 77 (243)
++|+|++|+|. +-++
T Consensus 43 k~G~tA~~lfG-~P~~ 57 (206)
T PF06570_consen 43 KKGKTARQLFG-DPKE 57 (206)
T ss_pred hCCCcHHHHcC-CHHH
Confidence 68999999998 4433
No 88
>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]
Probab=52.76 E-value=12 Score=37.46 Aligned_cols=56 Identities=21% Similarity=0.159 Sum_probs=35.1
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh-hhHHHH
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE-QHKDFL 79 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~-~h~~l~ 79 (243)
+..|.|. .|+||.||..|+.+... .|.-.+ .++ ...+|.-|.||.|-... +|++..
T Consensus 533 ~~~DyD~-RTaLHvAAaEG~v~v~k-----fl~~~~----kv~---~~~kDRw~rtPlDdA~~F~h~~v~ 589 (622)
T KOG0506|consen 533 ETKDYDD-RTALHVAAAEGHVEVVK-----FLLNAC----KVD---PDPKDRWGRTPLDDAKHFKHKEVV 589 (622)
T ss_pred ccccccc-chhheeecccCceeHHH-----HHHHHH----cCC---CChhhccCCCcchHhHhcCcHHHH
Confidence 4678888 99999999888765321 111111 122 36778889999886554 455543
No 89
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]
Probab=48.88 E-value=14 Score=34.93 Aligned_cols=55 Identities=16% Similarity=0.084 Sum_probs=31.9
Q ss_pred hhhhhhcc-----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHH
Q 045342 3 VYNKFISP-----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIF 71 (243)
Q Consensus 3 ~~~~~~~~-----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif 71 (243)
..+++|.. ..||..| .||||.||.-|+.+.-| |.|.-..| -...|.-|+|+.+..
T Consensus 60 ~v~lll~~gaDvN~~qhg~~-YTpLmFAALSGn~dvcr------llldaGa~-------~~~vNsvgrTAaqmA 119 (396)
T KOG1710|consen 60 LVELLLELGADVNDKQHGTL-YTPLMFAALSGNQDVCR------LLLDAGAR-------MYLVNSVGRTAAQMA 119 (396)
T ss_pred HHHHHHHhCCCcCccccccc-ccHHHHHHHcCCchHHH------HHHhccCc-------cccccchhhhHHHHH
Confidence 34455544 3566667 78888887777654322 11111111 256788899998774
No 90
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=46.96 E-value=8.4 Score=30.82 Aligned_cols=18 Identities=28% Similarity=0.198 Sum_probs=14.9
Q ss_pred CCCchhhhhhhccCCcch
Q 045342 17 TKDNILHLAAKLALPTHL 34 (243)
Q Consensus 17 G~NT~LHLAa~~~~~~~~ 34 (243)
||.||||.||-.++.+.+
T Consensus 33 ggR~plhyAAD~GQl~il 50 (117)
T KOG4214|consen 33 GGRTPLHYAADYGQLSIL 50 (117)
T ss_pred CCcccchHhhhcchHHHH
Confidence 559999999999887653
No 91
>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]
Probab=45.40 E-value=12 Score=39.17 Aligned_cols=23 Identities=30% Similarity=0.137 Sum_probs=18.7
Q ss_pred ccccccCCCCCchhhhhhhccCCc
Q 045342 9 SPQLIDESTKDNILHLAAKLALPT 32 (243)
Q Consensus 9 ~~~~~D~~G~NT~LHLAa~~~~~~ 32 (243)
+++.+|-+| -|+||.|+..++.+
T Consensus 41 s~n~qd~~g-fTalhha~Lng~~~ 63 (854)
T KOG0507|consen 41 SHNLQDYSG-FTLLHHAVLNGQNQ 63 (854)
T ss_pred cccccCccc-hhHHHHHHhcCchH
Confidence 447888888 99999999888765
No 92
>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=41.20 E-value=4.7e+02 Score=27.88 Aligned_cols=32 Identities=22% Similarity=0.266 Sum_probs=23.3
Q ss_pred hhhhhhhcc------ccccCCCCCchhhhhhhccCCcch
Q 045342 2 DVYNKFISP------QLIDESTKDNILHLAAKLALPTHL 34 (243)
Q Consensus 2 ~~~~~~~~~------~~~D~~G~NT~LHLAa~~~~~~~~ 34 (243)
+.|+-+++. ..++++| =|||-|||++|..+.+
T Consensus 287 ~My~~~L~~ga~~l~~v~N~qg-LTPLtLAaklGk~emf 324 (782)
T KOG3676|consen 287 EMYDLALELGANALEHVRNNQG-LTPLTLAAKLGKKEMF 324 (782)
T ss_pred HHHHHHHhcCCCccccccccCC-CChHHHHHHhhhHHHH
Confidence 345555554 2467889 9999999999986644
No 93
>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]
Probab=38.73 E-value=22 Score=36.22 Aligned_cols=52 Identities=13% Similarity=0.040 Sum_probs=36.0
Q ss_pred ccccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHhh
Q 045342 9 SPQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIEQ 74 (243)
Q Consensus 9 ~~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~~ 74 (243)
.+..-+++| =|+||-|+-.++.+++. +..+..+ ..+.-|.||.||..-....
T Consensus 575 DpSqpNdEG-ITaLHNAiCaghyeIVk------FLi~~ga-------nVNa~DSdGWTPLHCAASC 626 (752)
T KOG0515|consen 575 DPSQPNDEG-ITALHNAICAGHYEIVK------FLIEFGA-------NVNAADSDGWTPLHCAASC 626 (752)
T ss_pred CCCCCCccc-hhHHhhhhhcchhHHHH------HHHhcCC-------cccCccCCCCchhhhhhhc
Confidence 345667788 99999999999976531 1122111 2588899999998776653
No 94
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=38.28 E-value=24 Score=37.24 Aligned_cols=50 Identities=22% Similarity=0.193 Sum_probs=35.8
Q ss_pred cccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 10 PQLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
.++.|..| |||||.+...++.... .+.+. +.......|.+|++|.++..+
T Consensus 682 vn~~d~~g-~~plh~~~~~g~~~~~------~~ll~-------~~a~~~a~~~~~~~~l~~a~~ 731 (785)
T KOG0521|consen 682 VNALDSKG-RTPLHHATASGHTSIA------CLLLK-------RGADPNAFDPDGKLPLDIAME 731 (785)
T ss_pred chhhhccC-CCcchhhhhhcccchh------hhhcc-------ccccccccCccCcchhhHHhh
Confidence 37899999 9999999999886532 22221 122357888999999988744
No 95
>COG4160 ArtM ABC-type arginine/histidine transport system, permease component [Amino acid transport and metabolism]
Probab=35.75 E-value=87 Score=28.28 Aligned_cols=46 Identities=26% Similarity=0.587 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcC--CCcchhhHH
Q 045342 164 FVESLQKKLIIGLASLFISSIVNMMISFVATFSIVLHD--RSKWLTIPI 210 (243)
Q Consensus 164 f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~~vl~~--~~~w~~~~i 210 (243)
|.+..|..+.---+.|++ -+.+++++|.-++-+.+.. +.+|+..++
T Consensus 6 ~~~~~p~~l~Gl~~TL~L-l~~Sl~iG~~LAlpla~~r~s~~~~~~~~a 53 (228)
T COG4160 6 FLEYLPRLLSGLATTLWL-LIISLVIGFVLALPLALARVSKNRWVSWPA 53 (228)
T ss_pred HHHHHHHHHchHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCchhhhhh
Confidence 445556554432345555 6677888888887766643 556766655
No 96
>KOG4214 consensus Myotrophin and similar proteins [Transcription]
Probab=35.23 E-value=28 Score=27.89 Aligned_cols=57 Identities=19% Similarity=0.064 Sum_probs=36.5
Q ss_pred hhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHHh
Q 045342 3 VYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 3 ~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~~ 73 (243)
|.+-|++. |..|+.| =|||--|+.-++.+.. -|.+|... ....+-.||.+..|--.+
T Consensus 49 ilefli~iGA~i~~kDKyg-ITPLLsAvwEGH~~cV------klLL~~GA-------drt~~~PdG~~~~eate~ 109 (117)
T KOG4214|consen 49 ILEFLISIGANIQDKDKYG-ITPLLSAVWEGHRDCV------KLLLQNGA-------DRTIHAPDGTALIEATEE 109 (117)
T ss_pred HHHHHHHhccccCCccccC-CcHHHHHHHHhhHHHH------HHHHHcCc-------ccceeCCCchhHHhhccH
Confidence 44556665 7889999 9999999998885532 22233222 235566788777665543
No 97
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=34.18 E-value=26 Score=37.70 Aligned_cols=54 Identities=19% Similarity=0.135 Sum_probs=33.2
Q ss_pred ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhcccccccc--CCCCCChHHHHHhh
Q 045342 11 QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQ--NIDGKTAQDIFIEQ 74 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~--N~~g~Tp~dif~~~ 74 (243)
+-.|..| .||||.|+..|+...... -..++++ |....+.. +.+|.|+.|+-..+
T Consensus 635 ~i~D~~G-~tpL~wAa~~G~e~l~a~----l~~lga~-----~~~~tdps~~~p~g~ta~~la~s~ 690 (975)
T KOG0520|consen 635 DIRDRNG-WTPLHWAAFRGREKLVAS----LIELGAD-----PGAVTDPSPETPGGKTAADLARAN 690 (975)
T ss_pred ccccCCC-CcccchHhhcCHHHHHHH----HHHhccc-----cccccCCCCCCCCCCchhhhhhcc
Confidence 5789999 999999999998542211 1111211 22223333 34699999997754
No 98
>COG0581 PstA ABC-type phosphate transport system, permease component [Inorganic ion transport and metabolism]
Probab=32.46 E-value=1.6e+02 Score=27.44 Aligned_cols=51 Identities=25% Similarity=0.340 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHhHHHhcCCCcchh----hHH--HHHHHHHHHHhhhhHHHHHHHH
Q 045342 182 SSIVNMMISFVATFSIVLHDRSKWLT----IPI--LASVPLTIHALLQLPLFVQMYQ 232 (243)
Q Consensus 182 sSi~~m~vAF~ag~~~vl~~~~~w~~----~~i--~~~~p~~~f~~~q~pl~~~~~~ 232 (243)
+++.++.++..+|+|+.=-.+.+|.. ..+ ++++|-++|.++-+-+++..+.
T Consensus 83 ~~li~~PiGv~aaIYL~EYa~~~~~t~~ir~~i~~La~vPSIV~GLFg~~~fV~~~g 139 (292)
T COG0581 83 AILIGVPLGIGAGIYLAEYAKKSRLTKVIRFAIDILASVPSIVYGLFGLGFFVVTLG 139 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHC
Confidence 58888999999999987544445543 333 8899999999988888877553
No 99
>KOG0522 consensus Ankyrin repeat protein [General function prediction only]
Probab=31.35 E-value=26 Score=35.33 Aligned_cols=22 Identities=14% Similarity=-0.005 Sum_probs=19.0
Q ss_pred ccccCCCCCchhhhhhhccCCcc
Q 045342 11 QLIDESTKDNILHLAAKLALPTH 33 (243)
Q Consensus 11 ~~~D~~G~NT~LHLAa~~~~~~~ 33 (243)
..++++| +|+||.|+..++.+.
T Consensus 82 ~~kN~~g-Ws~L~EAv~~g~~q~ 103 (560)
T KOG0522|consen 82 SIKNNEG-WSPLHEAVSTGNEQI 103 (560)
T ss_pred ccccccc-ccHHHHHHHcCCHHH
Confidence 3689999 999999999998753
No 100
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=30.87 E-value=42 Score=30.76 Aligned_cols=23 Identities=22% Similarity=-0.114 Sum_probs=20.1
Q ss_pred cccccCCCCCchhhhhhhccCCcc
Q 045342 10 PQLIDESTKDNILHLAAKLALPTH 33 (243)
Q Consensus 10 ~~~~D~~G~NT~LHLAa~~~~~~~ 33 (243)
+|+-|+.| -|||--|+.+|+...
T Consensus 153 VN~~De~G-fTpLiWAaa~G~i~v 175 (296)
T KOG0502|consen 153 VNACDEFG-FTPLIWAAAKGHIPV 175 (296)
T ss_pred ccCccccC-chHhHHHHhcCchHH
Confidence 36899999 999999999998664
No 101
>PRK07668 hypothetical protein; Validated
Probab=30.25 E-value=4.3e+02 Score=24.18 Aligned_cols=47 Identities=26% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCCCChHHHHHhhhHHHHHHHHHHHh-hhhchh-HHHHHHHHHHHhhhh
Q 045342 62 IDGKTAQDIFIEQHKDFLENSEKWMK-YTSNSC-MVVTALIATMMFATA 108 (243)
Q Consensus 62 ~~g~Tp~dif~~~h~~l~~~~~~~~k-~~~~s~-~vVA~LIaTvtFaaa 108 (243)
++|+|+.|+|.++-++..+|-.+.++ +...+. .+-.+.++.++|-+-
T Consensus 43 k~GkTA~~IfG~sPk~yA~EL~~~~~~~~~~~~~~l~~~ii~~l~~~~i 91 (254)
T PRK07668 43 KDGKTVEDIFGDSPKEYANELVKEMEVDRKENIKLILFIIIGILSFWII 91 (254)
T ss_pred HcCCcHHHHhCCCHHHHHHHHhcccCCCcchHHHHHHHHHHHHHHHHHH
Confidence 78999999999765554333222111 221222 345666666666553
No 102
>KOG2505 consensus Ankyrin repeat protein [General function prediction only]
Probab=30.19 E-value=23 Score=35.69 Aligned_cols=47 Identities=19% Similarity=0.070 Sum_probs=30.1
Q ss_pred cccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhccccccccCCCCCChHHHHH
Q 045342 12 LIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVHHFLKKVQNIDGKTAQDIFI 72 (243)
Q Consensus 12 ~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp~~~~~~~N~~g~Tp~dif~ 72 (243)
..|.-- -|+||.|++-+..+. ++...+| . .+..++|..|+||.++-.
T Consensus 425 ~~~~lt-sT~LH~aa~qg~~k~-------v~~~Lee---g---~Dp~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 425 ANDYLT-STFLHYAAAQGARKC-------VKYFLEE---G---CDPSTKDGAGRTPYSLSA 471 (591)
T ss_pred cccccc-chHHHHHHhcchHHH-------HHHHHHh---c---CCchhcccCCCCcccccc
Confidence 444445 699999999876442 2222222 1 245788999999986644
No 103
>PF12304 BCLP: Beta-casein like protein; InterPro: IPR020977 This entry represents eukaryotic proteins that are typically between 216 to 240 amino acids in length which have two conserved sequence motifs: VLR and TRIY. Beta-casein-like protein is associated with cell morphology and a regulation of growth pattern of tumours. It is found in adenocarcinomas of uterine cervical tissues[].
Probab=30.13 E-value=1.7e+02 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.261 Sum_probs=22.5
Q ss_pred hhHHHHhHHHHHHhHHHHHH-HHHHHhhhhhh
Q 045342 130 MVFAISYALGFIFTSTPLLV-FVSIQIAQYAE 160 (243)
Q Consensus 130 ~~F~i~d~iA~~~S~~av~~-fl~il~s~~~~ 160 (243)
.-|.++|.+|..+.+.++.. ...|+.||+-.
T Consensus 38 ~eY~vsNiisv~Sgll~I~~GI~AIvlSrnl~ 69 (188)
T PF12304_consen 38 LEYAVSNIISVTSGLLSIICGIVAIVLSRNLR 69 (188)
T ss_pred ehhhHHHHHHHHHHHHHHHHhHHHHhhhccCC
Confidence 45788999999999888866 33466676543
No 104
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.45 E-value=2.4e+02 Score=24.54 Aligned_cols=88 Identities=22% Similarity=0.221 Sum_probs=45.7
Q ss_pred hhHHHHhHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCcchh-h
Q 045342 130 MVFAISYALGFIFTSTPLLVFVSIQIAQYAEKDYFVESLQKKLIIGLASLFISSIVNMMISFVATFSIVLHDRSKWLT-I 208 (243)
Q Consensus 130 ~~F~i~d~iA~~~S~~av~~fl~il~s~~~~~d~f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~~vl~~~~~w~~-~ 208 (243)
+-|.+..|++-..++.+...+.+-. .+.+. ..-|+|+...+ .++ .++..++|..+.-+++-+. +
T Consensus 75 ~kFal~~TlGnll~i~sf~fLmGP~---~ql~~---m~~p~Rl~~T~--~~l-------~~~~~Tly~al~~ks~iLtll 139 (175)
T KOG2887|consen 75 RKFALLYTLGNLLAIGSFAFLMGPV---SQLKH---MFSPERLPATL--SYL-------ATMVLTLYVALWLKSKILTLL 139 (175)
T ss_pred ceeehhHHHHHHHHHHHHHHHHhHH---HHHHH---hcChhHHHHHH--HHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 5688888888888877765544421 11111 01144544321 122 3344444544432333332 2
Q ss_pred HH-HHHHHHHHHHhhhhHHHHHHHH
Q 045342 209 PI-LASVPLTIHALLQLPLFVQMYQ 232 (243)
Q Consensus 209 ~i-~~~~p~~~f~~~q~pl~~~~~~ 232 (243)
.+ +=++.++-|.+..+|.=-+-++
T Consensus 140 f~ilq~laliwYslSyiP~g~~gv~ 164 (175)
T KOG2887|consen 140 FCILQVLALIWYSLSYIPFGRSGVS 164 (175)
T ss_pred HHHHHHHHHHHHHHHhCcchhhHHH
Confidence 22 5556778888999997555443
No 105
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=24.59 E-value=6.6e+02 Score=25.03 Aligned_cols=82 Identities=13% Similarity=0.217 Sum_probs=42.1
Q ss_pred hhHHHHhHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCCCcchhhH
Q 045342 130 MVFAISYALGFIFTSTPLLVFVSIQIAQYAEKDYFVESLQKKLIIGLASLFISSIVNMMISFVATFSIVLHDRSKWLTIP 209 (243)
Q Consensus 130 ~~F~i~d~iA~~~S~~av~~fl~il~s~~~~~d~f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~~vl~~~~~w~~~~ 209 (243)
-+|++.-.+-+.+|+-|...-++.++++. ++| -....|+.||...-.+ ++. +-...| -..--...
T Consensus 396 ~~~lil~~~f~vTs~DS~~~~la~~s~~~-~~e---p~~~~ri~W~~~~~~~-a~~---ll~~gg-------l~~lq~~~ 460 (485)
T PF02028_consen 396 ILFLILIFIFFVTSADSATYVLAMLSSKG-DEE---PPRWLRIFWGLIIGAL-AIV---LLLIGG-------LDALQSAS 460 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCTT-TSS---S-HHHHHHHHHHHHHH-HHH---HHHHHS-------SHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHcCC-CCC---CchHHHHHHHHHHHHH-HHH---HHHhCC-------HHHHHHHH
Confidence 45666666666677666544445455443 222 2345678887654333 322 222233 11222344
Q ss_pred HHHHHHHHHHHhhhhHH
Q 045342 210 ILASVPLTIHALLQLPL 226 (243)
Q Consensus 210 i~~~~p~~~f~~~q~pl 226 (243)
+++.+|+.+..+...--
T Consensus 461 ii~~lP~~~v~~~~~~~ 477 (485)
T PF02028_consen 461 IIGGLPFSFVMLLMCIS 477 (485)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 57778888876554433
No 106
>PF06610 DUF1144: Protein of unknown function (DUF1144); InterPro: IPR010574 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=23.77 E-value=4.4e+02 Score=22.17 Aligned_cols=85 Identities=20% Similarity=0.274 Sum_probs=44.0
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH--HHhcC-----CCcc
Q 045342 133 AISYALGFIFTSTPLLVFVSIQIAQYAEKDYFVESLQKKLIIGLASLFISSIVNMMISFVATFS--IVLHD-----RSKW 205 (243)
Q Consensus 133 ~i~d~iA~~~S~~av~~fl~il~s~~~~~d~f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~--~vl~~-----~~~w 205 (243)
.++||+|+..=.+.+.+++=+..|... |..+|..+++- .-+...+|-==|+| -++.. .++|
T Consensus 12 a~ADTfAmVvf~~v~gm~iEifisGMs----feQsL~sRll~--------iPvnI~iA~PYG~~RD~~lr~~~~~~~~~~ 79 (143)
T PF06610_consen 12 AAADTFAMVVFCFVTGMLIEIFISGMS----FEQSLSSRLLS--------IPVNILIAWPYGIYRDWVLRQAARLSPSRW 79 (143)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHccCC----HHHHHHHHHHh--------hhhhhhhccchhHHHHHHHHHhcccCchHH
Confidence 468999997766666665555555444 33454444331 12222444444554 22221 2345
Q ss_pred hhhHHHHHHHHHHHHhhhhHHHHHHHHH
Q 045342 206 LTIPILASVPLTIHALLQLPLFVQMYQS 233 (243)
Q Consensus 206 ~~~~i~~~~p~~~f~~~q~pl~~~~~~~ 233 (243)
..... =.+-++.+|-|.|..++..
T Consensus 80 ~~~l~----D~lAyvsFQsPVYaaIL~~ 103 (143)
T PF06610_consen 80 SKNLA----DLLAYVSFQSPVYAAILWF 103 (143)
T ss_pred HHHHH----HHHHHHHhchHHHHHHHHH
Confidence 44333 2234566678887776653
No 107
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=23.51 E-value=87 Score=26.57 Aligned_cols=63 Identities=17% Similarity=0.171 Sum_probs=42.9
Q ss_pred HHhhhHHHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhccCCCCCCC------CCcccccCCchhhhHHH
Q 045342 71 FIEQHKDFLENSEKWMKYTSNSCMVVTALIATMMFATACTVPGGNIE------SGNPIFLRDKLFMVFAI 134 (243)
Q Consensus 71 f~~~h~~l~~~~~~~~k~~~~s~~vVA~LIaTvtFaaaft~PGG~~~------~G~~~l~~~~~F~~F~i 134 (243)
|.|..++|-.+.+.++.+.=++...-..++.-.+|.++|-.|--|.- .|.|+=. +..|.-|++
T Consensus 7 FYEaD~~L~~~DR~eL~~~~q~i~~~~~~~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~~-~~pflSf~l 75 (152)
T PF07954_consen 7 FYEADQKLDHEDRLELAKDLQSIARKSNLGGYGGFMAGFFAPTAYYRYKTGAIKGVPVPR-QKPFLSFLL 75 (152)
T ss_pred HHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcccccCCcCCc-cCcchhHHH
Confidence 55544445445555666666777777788889999999999998842 6777655 444544443
No 108
>PF13373 DUF2407_C: DUF2407 C-terminal domain
Probab=23.49 E-value=4.3e+02 Score=21.93 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=39.7
Q ss_pred hhHHHHHHHHHHHhhhhchhHHHHHHHHHHHhhhhccCCCCCCC--C--Cc-ccccCCchhhhHHHHhHHHHHHhHHHHH
Q 045342 74 QHKDFLENSEKWMKYTSNSCMVVTALIATMMFATACTVPGGNIE--S--GN-PIFLRDKLFMVFAISYALGFIFTSTPLL 148 (243)
Q Consensus 74 ~h~~l~~~~~~~~k~~~~s~~vVA~LIaTvtFaaaft~PGG~~~--~--G~-~~l~~~~~F~~F~i~d~iA~~~S~~av~ 148 (243)
..+++++.-++||.+..+ .++-+-|++-.+ + +. .--......+-++.--.++|+.-+.+++
T Consensus 43 ~~~~lR~LEe~Wmd~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlL~G~liGff~g~~~~~ 108 (140)
T PF13373_consen 43 SQRDLRQLEERWMDSGSN--------------PAARAGGGGAGDNGDQFNSAVDASNSGHNDDLLWGLLIGFFFGLFSLF 108 (140)
T ss_pred hHHHHHHHHHHHHhCCCc--------------ccccCCCCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHhHH
Confidence 345666667899999988 222222333322 1 11 2233455678888888899999988865
Q ss_pred HHH
Q 045342 149 VFV 151 (243)
Q Consensus 149 ~fl 151 (243)
+++
T Consensus 109 ~L~ 111 (140)
T PF13373_consen 109 WLL 111 (140)
T ss_pred HHh
Confidence 543
No 109
>PF14015 DUF4231: Protein of unknown function (DUF4231)
Probab=22.69 E-value=3.4e+02 Score=20.43 Aligned_cols=26 Identities=12% Similarity=0.475 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHhHHHhcCCCcchhh
Q 045342 183 SIVNMMISFVATFSIVLHDRSKWLTI 208 (243)
Q Consensus 183 Si~~m~vAF~ag~~~vl~~~~~w~~~ 208 (243)
++.+.++++++++.....++.+|..+
T Consensus 56 ~~l~~~~~~~~~~~~~~~~~~~W~~~ 81 (112)
T PF14015_consen 56 AILSALAAILASLAAFFRFHERWIRY 81 (112)
T ss_pred HHHHHHHHHHHHHHHHhchhHHHHHH
Confidence 44455667777777777777778654
No 110
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=22.37 E-value=6e+02 Score=25.29 Aligned_cols=30 Identities=7% Similarity=0.205 Sum_probs=13.5
Q ss_pred HHHhHHHHHHhHHHHHHHHHHHhhhhhhhh
Q 045342 133 AISYALGFIFTSTPLLVFVSIQIAQYAEKD 162 (243)
Q Consensus 133 ~i~d~iA~~~S~~av~~fl~il~s~~~~~d 162 (243)
++.-..+...+...-.+++++.+.|...+.
T Consensus 431 l~~~~~~~~a~~~~p~lllgl~Wkr~n~~G 460 (549)
T TIGR02711 431 MVGLAFSIAASCNFPIILLSMYWSKLTTRG 460 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 344334444433333344566565554443
No 111
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.57 E-value=2.1e+02 Score=23.20 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcC
Q 045342 143 TSTPLLVFVSIQIAQYAEKDYFVESLQKKLIIGLASLFISSIVNMMISFVATFSIVLHD 201 (243)
Q Consensus 143 S~~av~~fl~il~s~~~~~d~f~~~l~~kl~~gl~~l~~sSi~~m~vAF~ag~~~vl~~ 201 (243)
|-+.+..++++++.+| ..+-|. |+ |+.+++.|++|+..|+..
T Consensus 54 sGilVGa~iG~llD~~------agTsPw----gl-------Iv~lllGf~AG~lnv~Rs 95 (116)
T COG5336 54 SGILVGAGIGWLLDKF------AGTSPW----GL-------IVFLLLGFGAGVLNVLRS 95 (116)
T ss_pred HHHHHHHHHHHHHHHh------cCCCcH----HH-------HHHHHHHHHHHHHHHHHH
Confidence 3445555677666544 333353 33 233458899999988753
No 112
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=20.18 E-value=4.3e+02 Score=20.60 Aligned_cols=12 Identities=17% Similarity=0.700 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHH
Q 045342 169 QKKLIIGLASLF 180 (243)
Q Consensus 169 ~~kl~~gl~~l~ 180 (243)
|.|+.+|.+.+.
T Consensus 24 ~~rv~l~it~lL 35 (237)
T PF02932_consen 24 PERVTLGITTLL 35 (237)
T ss_dssp HHHHHHHHHHHH
T ss_pred ccccccchhHHH
Confidence 346666654333
No 113
>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]
Probab=20.17 E-value=1.1e+02 Score=28.10 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=35.5
Q ss_pred hhhhhhhcc----ccccCCCCCchhhhhhhccCCcchhhhhhHHhhcchhhhhhhc-cccccccCCCCCChHHHHHh
Q 045342 2 DVYNKFISP----QLIDESTKDNILHLAAKLALPTHLRIMLGVALKMQREVEKLVH-HFLKKVQNIDGKTAQDIFIE 73 (243)
Q Consensus 2 ~~~~~~~~~----~~~D~~G~NT~LHLAa~~~~~~~~~~~~~~aL~m~~eV~~~vp-~~~~~~~N~~g~Tp~dif~~ 73 (243)
||++-|+-+ |.-|-+| -|||-+|+.-++.+. ||..+- ..+.+..+.-|.++.|+.-.
T Consensus 207 diV~lLL~r~vdVNvyDwNG-gTpLlyAvrgnhvkc--------------ve~Ll~sGAd~t~e~dsGy~~mdlAVa 268 (296)
T KOG0502|consen 207 DIVELLLTREVDVNVYDWNG-GTPLLYAVRGNHVKC--------------VESLLNSGADVTQEDDSGYWIMDLAVA 268 (296)
T ss_pred HHHHHHHhcCCCcceeccCC-CceeeeeecCChHHH--------------HHHHHhcCCCcccccccCCcHHHHHHH
Confidence 455556554 6778888 888888887666443 222221 22456667778888877654
Done!