BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045344
(627 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 164 bits (416), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 173/322 (53%), Gaps = 13/322 (4%)
Query: 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLF 242
+GV +G +A++ + ++++ N IK+ +++ L + IE+++ +PN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 243 DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQA 302
+A + SNA WV++N+ D VK KY+AVGNE + + + PA++N+ A
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 303 LVEAGHGKMVKATVPLNADVYEGTLP-SDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYP 361
L AG +K + + + T P D +FR++ K I+ I+ L + P + NIYP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 362 FLSLYESPD-FPVEYAFFEEGAKGLQDKNHR-YTNVLDGNYDTLLSALKKAGYPDMKIII 419
+ ++ + P+ YA F + Q +N Y N+ D D++ A +K G +++II+
Sbjct: 180 YFGHIDNTNAVPLSYALFNQ-----QRRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 420 GEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAP 479
E GWP++GH AAT ++A+ +Y L + + GTP +PG + YLF DE+ K
Sbjct: 235 SESGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 480 GKFERHWGIFRFDGQPKFPIDF 501
E+H+G+F D +PK+ ++F
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 162 bits (410), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 97/322 (30%), Positives = 172/322 (53%), Gaps = 13/322 (4%)
Query: 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLF 242
+GV +G +A++ + ++++ N IK+ +++ L + IE+++ +PN L
Sbjct: 3 IGVCYGKIANNLPSDQDVIKLYNANNIKKMRIYYPHTNVFNALKGSNIEIILDVPNQDLE 62
Query: 243 DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQA 302
+A + SNA WV++N+ D VK KY+AVGNE + + + PA++N+ A
Sbjct: 63 ALA-NPSNANGWVQDNIRNHFPD--VKFKYIAVGNEVDPGRESGKYARFVGPAMENIYNA 119
Query: 303 LVEAGHGKMVKATVPLNADVYEGTLP-SDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYP 361
L AG +K + + + T P D +FR++ K I+ I+ L + P + NIYP
Sbjct: 120 LSSAGLQNQIKVSTSTYSGLLTNTYPPRDSIFREEYKSFINPIIGFLARHNLPLLANIYP 179
Query: 362 FLSLYESPD-FPVEYAFFEEGAKGLQDKNHR-YTNVLDGNYDTLLSALKKAGYPDMKIII 419
+ ++ + P+ YA F + Q +N Y N+ D D++ A +K G +++II+
Sbjct: 180 YFGHIDNTNAVPLSYALFNQ-----QRRNDTGYQNLFDALVDSMYFATEKLGGQNIEIIV 234
Query: 420 GEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAP 479
GWP++GH AAT ++A+ +Y L + + GTP +PG + YLF DE+ K
Sbjct: 235 SASGWPSEGHPAATLKNARTYYTNLINHVKRGAGTPKKPGKTIETYLFAMFDENEKKGEA 294
Query: 480 GKFERHWGIFRFDGQPKFPIDF 501
E+H+G+F D +PK+ ++F
Sbjct: 295 S--EKHFGLFNPDQRPKYQLNF 314
>pdb|3EM5|A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|B Chain B, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|C Chain C, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3EM5|D Chain D, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev
B 2), A Major Allergen From Hevea Brasiliensis
pdb|3F55|A Chain A, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|B Chain B, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|C Chain C, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
pdb|3F55|D Chain D, Crystal Structure Of The Native Endo Beta-1,3-Glucanase
(Hev B 2), A Major Allergen From Hevea Brasiliensis
(Space Group P41)
Length = 316
Score = 161 bits (408), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 93/324 (28%), Positives = 176/324 (54%), Gaps = 13/324 (4%)
Query: 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLF 242
VGV +G ++ P ++ + K + I R +++D ++ ++ L + IE+++ +PN L
Sbjct: 2 VGVCYGMQGNNLPPVSEVIALYKKSNITRMRIYDPNQAVLEALRGSNIELILGVPNSDLQ 61
Query: 243 DMAVDYSNAQNWVKENVTR-WVKDGSVKLKYVAVGNEPFLKSYNDSFVKD-TFPALKNVQ 300
+ + SNA++WV++NV W SV+ +Y+AVGNE + +++ PA++N+
Sbjct: 62 SL-TNPSNAKSWVQKNVRGFW---SSVRFRYIAVGNEISPVNRGTAWLAQFVLPAMRNIH 117
Query: 301 QALVEAGHGKMVKATVPLNADVYEGTLP-SDGVFRKDIKQHIDNILKNLHDNKSPFIVNI 359
A+ AG +K + ++ + + P S G FR D++ +++ I++ L +SP + NI
Sbjct: 118 DAIRSAGLQDQIKVSTAIDLTLVGNSYPPSAGAFRDDVRSYLNPIIRFLSSIRSPLLANI 177
Query: 360 YPFLSLYESP-DFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKII 418
YP+ + +P D + YA F + + D Y N+ D D L SAL++A ++++
Sbjct: 178 YPYFTYAGNPRDISLPYALFTSPSVVVWDGQRGYKNLFDATLDALYSALERASGGSLEVV 237
Query: 419 IGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIA 478
+ E GWP+ G AAT + + + L + + + GTP RP + YLF DE+ K
Sbjct: 238 VSESGWPSAGAFAATFDNGRTYLSNLIQHVKR--GTPKRPKRAIETYLFAMFDENKKQ-- 293
Query: 479 PGKFERHWGIFRFDGQPKFPIDFT 502
+ E+H+G+F + K+ ++F+
Sbjct: 294 -PEVEKHFGLFFPNKWQKYNLNFS 316
>pdb|2CYG|A Chain A, Crystal Structure At 1.45- Resolution Of The Major
Allergen Endo-Beta-1,3-Glucanase Of Banana As A
Molecular Basis For The Latex-Fruit Syndrome
Length = 312
Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 172/322 (53%), Gaps = 13/322 (4%)
Query: 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLF 242
+GV +G L ++ P +V + K N I R +L+D ++ +++ L ++ I+V++ +P +
Sbjct: 1 IGVCYGMLGNNLPPPSEVVSLYKSNNIARMRLYDPNQAALQALRNSNIQVLLDVPRSDVQ 60
Query: 243 DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQA 302
+A + S A +W++ NV + SV +Y+AVGNE S + PA++N+ A
Sbjct: 61 SLASNPSAAGDWIRRNVVAYWP--SVSFRYIAVGNELIPGS---DLAQYILPAMRNIYNA 115
Query: 303 LVEAGHGKMVKATVPLNADVYEGTL-PSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYP 361
L AG +K + ++ V + PS G F + ++ I++ L N +P +VN+YP
Sbjct: 116 LSSAGLQNQIKVSTAVDTGVLGTSYPPSAGAFSSAAQAYLSPIVQFLASNGAPLLVNVYP 175
Query: 362 FLSLYESP-DFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIG 420
+ S +P + YA F +QD Y N+ D D + +AL++ G ++ +++
Sbjct: 176 YFSYTGNPGQISLPYALFTASGVVVQDGRFSYQNLFDAIVDAVFAALERVGGANVAVVVS 235
Query: 421 EIGWPTDGHKA-ATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAP 479
E GWP+ G A A++ +AQ + L + + GTP RPG E + Y+F +E+ K+
Sbjct: 236 ESGWPSAGGGAEASTSNAQTYNQNLIRHVG--GGTPRRPGKEIEAYIFEMFNENQKA--- 290
Query: 480 GKFERHWGIFRFDGQPKFPIDF 501
G E+++G+F + QP + I F
Sbjct: 291 GGIEQNFGLFYPNKQPVYQISF 312
>pdb|1AQ0|A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1AQ0|B Chain B, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group
pdb|1GHR|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 159 bits (403), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 99/320 (30%), Positives = 164/320 (51%), Gaps = 15/320 (4%)
Query: 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLF 242
+GV +G A++ A +V M K NGIK +L+ ++ +++ + TGI V+V PN +L
Sbjct: 1 IGVCYGMSANNLPAASTVVSMFKSNGIKSMRLYAPNQAALQAVGGTGINVVVGAPNDVLS 60
Query: 243 DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQA 302
++A + A +WVK N+ + K V +YV VGNE ++ PA+KNV A
Sbjct: 61 NLAASPAAAASWVKSNIQAYPK---VSFRYVCVGNE-----VAGGATRNLVPAMKNVHGA 112
Query: 303 LVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPF 362
LV AG G + T A + + PS G F + + +++ L +P + NIYP+
Sbjct: 113 LVAAGLGHIKVTTSVSQAILGVFSPPSAGSFTGEAAAFMGPVVQFLARTNAPLMANIYPY 172
Query: 363 LSLYESPD-FPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGE 421
L+ +P + YA F ++D + Y N+ D D +A+ K G +K+++ E
Sbjct: 173 LAWAYNPSAMDMGYALFNASGTVVRDGAYGYQNLFDTTVDAFYTAMGKHGGSSVKLVVSE 232
Query: 422 IGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPGK 481
GWP+ G AAT +A+ + L + + GTP PG + Y+F +E+ K
Sbjct: 233 SGWPSGGGTAATPANARFYNQHLINHVGR--GTPRHPGA-IETYIFAMFNENQKD---SG 286
Query: 482 FERHWGIFRFDGQPKFPIDF 501
E++WG+F + Q +PI+F
Sbjct: 287 VEQNWGLFYPNMQHVYPINF 306
>pdb|1GHS|A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
pdb|1GHS|B Chain B, The Three-Dimensional Structures Of Two Plant Beta-Glucan
Endohydrolases With Distinct Substrate Specificities
Length = 306
Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 95/323 (29%), Positives = 174/323 (53%), Gaps = 21/323 (6%)
Query: 183 VGVNWGNLASHPLPAKI-IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGML 241
+GV +G + ++ LP++ +VQ+ + GI +++ AD ++ L ++GI +++ I N L
Sbjct: 1 IGVCYGVIGNN-LPSRSDVVQLYRSKGINGMRIYFADGQALSALRNSGIGLILDIGNDQL 59
Query: 242 FDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQ 301
++A SNA +WV+ NV + +V +KY+A GNE + PA++N+
Sbjct: 60 ANIAASTSNAASWVQNNVRPYYP--AVNIKYIAAGNE-----VQGGATQSILPAMRNLNA 112
Query: 302 ALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYP 361
AL AG G + +T +V PS GVF+ ++ ++ + L +P + N+YP
Sbjct: 113 ALSAAGLGAIKVSTSIRFDEVANSFPPSAGVFKN---AYMTDVARLLASTGAPLLANVYP 169
Query: 362 FLSLYESP-DFPVEYAFFEEGAKGLQDKNH--RYTNVLDGNYDTLLSALKKAGYPDMKII 418
+ + ++P + YA F+ G ++D+N+ YT++ D D + +AL+KAG P +K++
Sbjct: 170 YFAYRDNPGSISLNYATFQPGTT-VRDQNNGLTYTSLFDAMVDAVYAALEKAGAPAVKVV 228
Query: 419 IGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIA 478
+ E GWP+ G AA++ +A+ + GL + GTP + + Y+F +E+ K+
Sbjct: 229 VSESGWPSAGGFAASAGNARTYNQGLINHVG--GGTP-KKREALETYIFAMFNENQKT-- 283
Query: 479 PGKFERHWGIFRFDGQPKFPIDF 501
ER +G+F D P + I F
Sbjct: 284 GDATERSFGLFNPDKSPAYNIQF 306
>pdb|2JON|A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9
Length = 101
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 45/86 (52%), Gaps = 3/86 (3%)
Query: 523 WCVLDKGVTNFDLVDQQLFKACQEG-DCTATEPGSSCSGLDNL-TKVSYAFNMYFQMNQQ 580
WCV GV++ D + + AC +G DC +PG +C + + +Y N+Y+Q +
Sbjct: 13 WCVPKPGVSD-DQLTGNINYACSQGIDCGPIQPGGACFEPNTVKAHAAYVMNLYYQHAGR 71
Query: 581 VNKACDFEGLALITDKNASVGNCLFP 606
+ CDF A +T+ N S G C FP
Sbjct: 72 NSWNCDFSQTATLTNTNPSYGACNFP 97
>pdb|1W1O|A Chain A, Native Cytokinin Dehydrogenase
pdb|1W1Q|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Isopentenyladenine
pdb|1W1R|A Chain A, Plant Cytokinin Dehydrogenase In Complex With Trans-zeatin
pdb|1W1S|A Chain A, Plant Cytokinin Dehydrogenase In Complex With
Benzylaminopurine
Length = 534
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 193 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 240
>pdb|3S1D|A Chain A, Glu381ser Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenosine
Length = 516
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 175 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 222
>pdb|3S1E|A Chain A, Pro427gln Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 175 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 222
>pdb|3S1F|A Chain A, Asp169glu Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With N6-Isopentenyladenine
Length = 516
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 175 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 222
>pdb|2QKN|A Chain A, Crystal Structure Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
pdb|3BW7|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-1
pdb|3C0P|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH THE
ALLENIC Cytokinin Analog Ha-8
pdb|3DQ0|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH
N6-(3-Methoxy- Phenyl)adenine
pdb|3S1C|A Chain A, Maize Cytokinin OxidaseDEHYDROGENASE COMPLEXED WITH N6-
Isopentenyladenosine
Length = 516
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 175 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 222
>pdb|2QPM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Benzylurea Inhibitor Cpbu
pdb|3KJM|A Chain A, Leu492ala Mutant Of Maize Cytokinin OxidaseDEHYDROGENASE
COMPLEXED With Phenylurea Inhibitor Cppu
Length = 516
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%)
Query: 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341
P + NV + V GHG+MV + LNAD+++ L G F + I
Sbjct: 175 PQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLGQFGVITRARI 222
>pdb|3MIS|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
(-8g)
pdb|3MIS|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
(-8g)
Length = 161
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 11/127 (8%)
Query: 287 SFV--KDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNI 344
SF+ KD FP L+++ L + G+ + + + +Y T S + D+ ++
Sbjct: 42 SFIQRKDKFPYLQDIYDQLGKRGNLRKDRGDGIADYTIYGSTHLS--IILPDLVPYLR-- 97
Query: 345 LKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLL 404
+K N+ I+N+YP ++ P ++ + +Q+ N R + NYD LL
Sbjct: 98 IKKKQANRILHIINLYP-----QAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLL 152
Query: 405 SALKKAG 411
KAG
Sbjct: 153 EEFLKAG 159
>pdb|2NN6|A Chain A, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 358
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 363 LSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDG 398
LS++ P V +AFF++G L D N R V+DG
Sbjct: 202 LSIHHMP-ICVSFAFFQQGTYLLVDPNEREERVMDG 236
>pdb|3MIP|A Chain A, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
(-8gcg)
pdb|3MIP|B Chain B, I-Msoi Re-Designed For Altered Dna Cleavage Specificity
(-8gcg)
Length = 161
Score = 29.3 bits (64), Expect = 6.6, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 56/127 (44%), Gaps = 11/127 (8%)
Query: 287 SFV--KDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNI 344
SF+ KD FP L+++ L + G + + + +Y T S + D+ ++
Sbjct: 42 SFIQRKDKFPYLQDIYDQLGKRGILRKDRGDGIADYRIYGSTHLS--IILPDLVPYLR-- 97
Query: 345 LKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLL 404
+K N+ I+N+YP ++ P ++ + +Q+ N R + NYD LL
Sbjct: 98 IKKKQANRILHIINLYP-----QAQKNPSKFLDLVKIVDDVQNLNKRADELKSTNYDRLL 152
Query: 405 SALKKAG 411
KAG
Sbjct: 153 EEFLKAG 159
>pdb|3IZR|EE Chain e, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 244
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 2/42 (4%)
Query: 286 DSFVKDTFPALKNVQQALVEAGHGKMVKATVPL--NADVYEG 325
+ +V +P LK+V++ + + G+GK+ K +PL N + EG
Sbjct: 133 EPYVTYGYPNLKSVRELIYKRGYGKLNKQRIPLANNKVIEEG 174
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 28.9 bits (63), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 383 KGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGW 424
K H Y+ + GNY +L ALK+ PD+KII GW
Sbjct: 215 KSFPQAGHEYSTPIKGNY-AMLMALKQRN-PDLKIIPSIGGW 254
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 383 KGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGW 424
K H Y+ + GNY +L ALK+ PD+KII GW
Sbjct: 215 KSFPQAGHEYSTPIKGNY-AMLMALKQRN-PDLKIIPSIGGW 254
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,923,821
Number of Sequences: 62578
Number of extensions: 683376
Number of successful extensions: 1792
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1749
Number of HSP's gapped (non-prelim): 26
length of query: 627
length of database: 14,973,337
effective HSP length: 105
effective length of query: 522
effective length of database: 8,402,647
effective search space: 4386181734
effective search space used: 4386181734
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)