Query 045344
Match_columns 627
No_of_seqs 310 out of 1762
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 12:18:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00332 Glyco_hydro_17: Glyco 100.0 1.6E-83 3.5E-88 673.2 22.5 308 183-501 1-310 (310)
2 COG5309 Exo-beta-1,3-glucanase 100.0 8.8E-40 1.9E-44 329.3 23.4 261 170-493 33-305 (305)
3 smart00768 X8 Possibly involve 99.9 1.8E-26 3.8E-31 200.0 7.3 83 522-605 1-85 (85)
4 PF07983 X8: X8 domain; Inter 99.8 1.6E-20 3.4E-25 160.5 6.1 70 522-592 1-78 (78)
5 PF03198 Glyco_hydro_72: Gluca 99.2 1.1E-10 2.4E-15 122.5 13.8 195 181-428 28-252 (314)
6 PF07745 Glyco_hydro_53: Glyco 99.2 2.9E-09 6.2E-14 113.7 22.5 245 197-499 26-329 (332)
7 COG3867 Arabinogalactan endo-1 98.2 1.8E-05 3.9E-10 82.8 13.8 222 196-468 64-341 (403)
8 PF00150 Cellulase: Cellulase 98.1 0.00029 6.3E-09 71.4 19.2 119 196-315 22-171 (281)
9 PRK10150 beta-D-glucuronidase; 98.0 0.00048 1E-08 79.2 21.5 241 200-501 318-587 (604)
10 smart00633 Glyco_10 Glycosyl h 97.7 0.0029 6.2E-08 65.2 19.5 81 402-499 170-251 (254)
11 PF11790 Glyco_hydro_cc: Glyco 97.3 0.01 2.2E-07 60.8 16.2 168 268-494 64-231 (239)
12 PF02836 Glyco_hydro_2_C: Glyc 97.2 0.018 4E-07 60.3 17.6 98 180-279 15-132 (298)
13 PF00232 Glyco_hydro_1: Glycos 97.0 0.0065 1.4E-07 67.9 12.8 274 197-492 60-430 (455)
14 TIGR03356 BGL beta-galactosida 97.0 0.12 2.7E-06 57.5 22.3 80 197-280 56-163 (427)
15 PLN02814 beta-glucosidase 95.6 1.9 4.2E-05 49.2 22.3 80 197-280 79-187 (504)
16 PF02449 Glyco_hydro_42: Beta- 95.6 0.24 5.2E-06 53.8 14.5 83 197-281 12-140 (374)
17 PRK13511 6-phospho-beta-galact 95.4 2.4 5.2E-05 48.0 21.9 80 196-280 55-162 (469)
18 PLN02998 beta-glucosidase 95.4 1.6 3.4E-05 49.9 20.5 80 197-280 84-192 (497)
19 PLN02849 beta-glucosidase 95.0 3.2 7E-05 47.5 21.6 80 197-280 81-189 (503)
20 PRK15014 6-phospho-beta-glucos 94.4 10 0.00022 43.2 23.5 81 196-280 70-180 (477)
21 PRK09593 arb 6-phospho-beta-gl 94.0 14 0.00031 42.1 24.2 48 196-243 74-141 (478)
22 PRK09589 celA 6-phospho-beta-g 91.6 29 0.00062 39.6 24.0 46 197-242 69-134 (476)
23 PRK09852 cryptic 6-phospho-bet 91.3 31 0.00067 39.3 24.9 47 197-243 73-139 (474)
24 PF01229 Glyco_hydro_39: Glyco 90.6 13 0.00029 42.1 17.9 246 203-496 48-350 (486)
25 cd02875 GH18_chitobiase Chitob 89.9 5 0.00011 43.8 13.3 102 208-315 55-157 (358)
26 PRK10340 ebgA cryptic beta-D-g 85.6 45 0.00098 41.6 19.2 97 182-280 336-451 (1021)
27 COG3934 Endo-beta-mannanase [C 85.3 2.2 4.9E-05 48.2 7.1 187 252-499 123-312 (587)
28 PRK09525 lacZ beta-D-galactosi 84.3 74 0.0016 39.9 20.2 97 182-280 352-464 (1027)
29 PF00331 Glyco_hydro_10: Glyco 77.5 34 0.00074 36.7 12.7 91 400-498 219-312 (320)
30 PF03662 Glyco_hydro_79n: Glyc 77.4 9.4 0.0002 41.4 8.3 84 223-306 116-203 (319)
31 cd06545 GH18_3CO4_chitinase Th 73.2 34 0.00073 35.2 10.9 81 220-308 50-133 (253)
32 cd02872 GH18_chitolectin_chito 72.9 26 0.00057 37.7 10.4 82 223-307 62-151 (362)
33 cd02874 GH18_CFLE_spore_hydrol 71.7 25 0.00054 37.1 9.8 83 219-308 48-138 (313)
34 PF14587 Glyco_hydr_30_2: O-Gl 68.4 98 0.0021 34.6 13.5 97 220-319 108-227 (384)
35 smart00481 POLIIIAc DNA polyme 67.7 19 0.00042 29.2 6.2 43 195-237 15-62 (67)
36 PRK12677 xylose isomerase; Pro 66.2 1.6E+02 0.0035 32.7 14.9 64 170-235 5-86 (384)
37 COG4782 Uncharacterized protei 65.9 17 0.00037 40.2 7.0 57 392-451 125-187 (377)
38 PF00925 GTP_cyclohydro2: GTP 65.5 9.2 0.0002 37.5 4.5 38 200-237 131-168 (169)
39 PF04909 Amidohydro_2: Amidohy 65.2 21 0.00045 35.7 7.2 104 293-450 84-188 (273)
40 PF14488 DUF4434: Domain of un 64.2 1E+02 0.0023 30.1 11.6 80 220-307 69-152 (166)
41 PRK14334 (dimethylallyl)adenos 62.9 61 0.0013 36.3 11.0 36 195-230 167-219 (440)
42 smart00636 Glyco_18 Glycosyl h 61.9 89 0.0019 33.1 11.6 80 222-306 57-142 (334)
43 cd02876 GH18_SI-CLP Stabilin-1 61.4 74 0.0016 33.8 10.9 87 219-308 54-148 (318)
44 TIGR02631 xylA_Arthro xylose i 60.2 1.8E+02 0.0039 32.3 13.9 63 170-234 6-86 (382)
45 TIGR01579 MiaB-like-C MiaB-lik 59.5 76 0.0017 35.1 10.9 27 338-365 304-330 (414)
46 PLN02389 biotin synthase 58.5 1.3E+02 0.0028 33.4 12.4 44 194-237 115-174 (379)
47 COG3325 ChiA Chitinase [Carboh 57.2 2.3E+02 0.005 32.2 13.9 117 220-348 115-246 (441)
48 TIGR00505 ribA GTP cyclohydrol 53.7 20 0.00043 35.8 4.7 33 201-233 131-163 (191)
49 PRK00393 ribA GTP cyclohydrola 53.3 20 0.00044 36.0 4.7 36 201-236 134-169 (197)
50 PF01301 Glyco_hydro_35: Glyco 52.4 2.7E+02 0.0058 30.1 13.3 112 198-316 27-180 (319)
51 TIGR02495 NrdG2 anaerobic ribo 52.3 1.7E+02 0.0036 28.3 10.9 42 194-235 46-96 (191)
52 cd01543 PBP1_XylR Ligand-bindi 52.0 1.4E+02 0.0031 29.7 10.7 35 198-232 98-141 (265)
53 PRK14327 (dimethylallyl)adenos 51.9 2.7E+02 0.0058 32.3 13.9 138 195-363 241-402 (509)
54 PF00704 Glyco_hydro_18: Glyco 51.1 1.8E+02 0.0039 30.5 11.7 78 226-306 70-152 (343)
55 cd04743 NPD_PKS 2-Nitropropane 50.9 82 0.0018 34.3 9.1 78 182-279 57-134 (320)
56 PF13377 Peripla_BP_3: Peripla 50.7 1.7E+02 0.0038 26.6 10.3 122 201-348 1-134 (160)
57 PRK14330 (dimethylallyl)adenos 50.3 1.9E+02 0.0041 32.3 12.2 58 289-364 274-331 (434)
58 PRK09989 hypothetical protein; 50.1 1.7E+02 0.0036 29.9 10.9 52 182-234 3-58 (258)
59 cd06548 GH18_chitinase The GH1 49.7 1.2E+02 0.0026 32.3 10.2 83 222-307 75-169 (322)
60 PRK10076 pyruvate formate lyas 49.2 3E+02 0.0066 28.0 14.7 139 195-366 19-171 (213)
61 PF05990 DUF900: Alpha/beta hy 49.0 68 0.0015 32.9 7.8 41 407-450 42-88 (233)
62 PF00834 Ribul_P_3_epim: Ribul 47.7 1.6E+02 0.0036 29.7 10.2 101 196-315 68-172 (201)
63 cd02879 GH18_plant_chitinase_c 47.1 3E+02 0.0064 29.2 12.6 74 227-306 64-142 (299)
64 PRK14328 (dimethylallyl)adenos 47.0 2.4E+02 0.0053 31.6 12.4 57 289-363 281-337 (439)
65 PRK14339 (dimethylallyl)adenos 46.8 2.6E+02 0.0057 31.2 12.6 34 183-218 146-182 (420)
66 cd04734 OYE_like_3_FMN Old yel 45.5 4.3E+02 0.0094 28.7 13.7 124 326-453 64-206 (343)
67 PRK14332 (dimethylallyl)adenos 45.1 2.5E+02 0.0054 31.8 12.2 114 288-424 284-397 (449)
68 COG1242 Predicted Fe-S oxidore 45.1 70 0.0015 34.4 7.2 71 171-244 104-200 (312)
69 PRK09261 phospho-2-dehydro-3-d 44.7 2.4E+02 0.0053 31.2 11.5 69 391-466 238-306 (349)
70 cd00641 GTP_cyclohydro2 GTP cy 44.0 34 0.00074 34.2 4.6 36 201-236 133-168 (193)
71 cd02873 GH18_IDGF The IDGF's ( 44.0 1.1E+02 0.0025 34.0 9.2 20 289-308 168-187 (413)
72 PRK12822 phospho-2-dehydro-3-d 43.8 2.8E+02 0.0062 30.7 11.8 71 391-468 237-307 (356)
73 COG0621 MiaB 2-methylthioadeni 43.1 2.3E+02 0.005 32.3 11.4 56 289-362 279-334 (437)
74 PRK08508 biotin synthase; Prov 42.8 3.9E+02 0.0084 28.1 12.5 39 195-233 40-94 (279)
75 PRK12485 bifunctional 3,4-dihy 42.4 29 0.00063 38.4 4.2 36 200-236 330-365 (369)
76 PRK11145 pflA pyruvate formate 42.3 3.8E+02 0.0083 27.1 14.3 27 339-365 179-205 (246)
77 TIGR00612 ispG_gcpE 1-hydroxy- 41.9 4.2E+02 0.0092 29.3 12.6 147 180-357 123-292 (346)
78 PF02055 Glyco_hydro_30: O-Gly 41.9 3.1E+02 0.0066 31.7 12.3 62 253-315 208-277 (496)
79 PRK12755 phospho-2-dehydro-3-d 41.7 3.1E+02 0.0066 30.5 11.7 57 389-450 237-293 (353)
80 COG4213 XylF ABC-type xylose t 41.6 53 0.0011 35.8 5.8 77 219-318 175-251 (341)
81 PRK09936 hypothetical protein; 41.5 4E+02 0.0088 28.9 12.2 59 181-239 20-95 (296)
82 PRK13347 coproporphyrinogen II 40.3 98 0.0021 34.9 8.1 20 290-309 263-282 (453)
83 PRK14338 (dimethylallyl)adenos 40.2 1.9E+02 0.0042 32.7 10.4 36 195-230 184-237 (459)
84 PRK14457 ribosomal RNA large s 40.0 5.4E+02 0.012 28.2 13.7 25 339-365 271-295 (345)
85 COG3457 Predicted amino acid r 39.4 1.9E+02 0.0042 31.7 9.5 47 410-457 150-196 (353)
86 PF06180 CbiK: Cobalt chelatas 39.2 2.3E+02 0.005 30.0 10.1 137 192-365 55-208 (262)
87 COG2159 Predicted metal-depend 38.9 1.3E+02 0.0027 32.2 8.2 94 294-428 113-208 (293)
88 TIGR01574 miaB-methiolase tRNA 38.8 5.2E+02 0.011 29.0 13.4 25 339-364 314-338 (438)
89 cd00598 GH18_chitinase-like Th 38.0 1.1E+02 0.0023 29.8 7.1 85 220-308 53-142 (210)
90 PRK14019 bifunctional 3,4-dihy 37.5 39 0.00084 37.4 4.2 35 201-236 328-362 (367)
91 TIGR03632 bact_S11 30S ribosom 37.5 75 0.0016 29.1 5.4 37 198-234 50-91 (108)
92 TIGR00542 hxl6Piso_put hexulos 37.4 4.8E+02 0.01 26.8 13.5 39 195-233 16-69 (279)
93 cd02871 GH18_chitinase_D-like 36.7 5.5E+02 0.012 27.4 13.2 80 222-304 66-146 (312)
94 COG2896 MoaA Molybdenum cofact 36.4 3.5E+02 0.0075 29.7 11.1 138 193-366 41-189 (322)
95 TIGR03822 AblA_like_2 lysine-2 36.3 2.5E+02 0.0054 30.2 10.1 12 208-219 136-147 (321)
96 PF13756 Stimulus_sens_1: Stim 35.5 41 0.00088 30.9 3.4 27 196-222 2-31 (112)
97 cd06543 GH18_PF-ChiA-like PF-C 35.5 3.6E+02 0.0077 28.9 11.0 76 221-303 59-137 (294)
98 PRK13587 1-(5-phosphoribosyl)- 35.0 3.9E+02 0.0083 27.5 10.8 69 195-281 31-110 (234)
99 PRK14862 rimO ribosomal protei 34.9 3.3E+02 0.0072 30.6 11.1 57 289-363 280-336 (440)
100 COG0821 gcpE 1-hydroxy-2-methy 34.8 4.7E+02 0.01 29.0 11.6 144 180-354 125-291 (361)
101 PRK14331 (dimethylallyl)adenos 34.1 6.2E+02 0.013 28.4 13.1 56 289-362 279-334 (437)
102 cd02803 OYE_like_FMN_family Ol 34.1 5.9E+02 0.013 26.9 13.2 123 326-453 64-206 (327)
103 KOG0626 Beta-glucosidase, lact 34.1 89 0.0019 36.2 6.4 73 410-492 403-486 (524)
104 PRK13361 molybdenum cofactor b 34.0 6.2E+02 0.013 27.1 13.8 42 194-235 44-97 (329)
105 PRK09997 hydroxypyruvate isome 34.0 3.3E+02 0.0073 27.7 10.2 50 184-234 5-58 (258)
106 TIGR02666 moaA molybdenum cofa 33.9 5.1E+02 0.011 27.6 11.9 43 193-235 41-95 (334)
107 TIGR01125 MiaB-like tRNA modif 33.7 4E+02 0.0087 29.7 11.5 27 338-365 301-327 (430)
108 PRK08815 GTP cyclohydrolase; P 33.6 56 0.0012 36.3 4.6 37 201-237 305-341 (375)
109 PRK09318 bifunctional 3,4-dihy 33.3 57 0.0012 36.4 4.7 38 200-237 319-356 (387)
110 PRK09856 fructoselysine 3-epim 32.5 5.1E+02 0.011 26.4 11.3 117 294-440 47-167 (275)
111 PRK14337 (dimethylallyl)adenos 32.4 2.5E+02 0.0053 31.7 9.6 56 289-362 283-338 (446)
112 PRK06552 keto-hydroxyglutarate 32.1 4.7E+02 0.01 26.7 10.7 89 195-304 117-210 (213)
113 TIGR03628 arch_S11P archaeal r 32.0 1.1E+02 0.0024 28.5 5.6 37 198-234 53-102 (114)
114 PF02811 PHP: PHP domain; Int 31.9 1.2E+02 0.0027 28.1 6.2 45 193-237 14-63 (175)
115 PLN02831 Bifunctional GTP cycl 31.9 60 0.0013 37.0 4.6 38 200-237 372-409 (450)
116 TIGR00538 hemN oxygen-independ 31.8 4.1E+02 0.009 29.9 11.3 21 289-309 261-281 (455)
117 PRK09314 bifunctional 3,4-dihy 31.8 59 0.0013 35.7 4.4 34 200-233 300-334 (339)
118 KOG1411 Aspartate aminotransfe 31.8 55 0.0012 36.3 4.1 122 195-323 215-368 (427)
119 PRK09311 bifunctional 3,4-dihy 31.8 61 0.0013 36.3 4.6 38 200-237 338-375 (402)
120 COG1433 Uncharacterized conser 30.9 1E+02 0.0022 29.1 5.2 40 198-237 55-94 (121)
121 PRK09607 rps11p 30S ribosomal 30.8 1.2E+02 0.0025 29.1 5.7 37 198-234 60-109 (132)
122 TIGR02668 moaA_archaeal probab 30.8 6.4E+02 0.014 26.3 13.0 42 193-234 38-90 (302)
123 PRK07379 coproporphyrinogen II 30.1 1.4E+02 0.0031 33.0 7.2 19 291-309 228-246 (400)
124 cd03174 DRE_TIM_metallolyase D 30.0 5.9E+02 0.013 25.7 12.3 39 200-238 24-75 (265)
125 cd02878 GH18_zymocin_alpha Zym 29.7 3.8E+02 0.0081 29.0 10.2 17 289-305 134-150 (345)
126 PRK13210 putative L-xylulose 5 29.4 6.2E+02 0.014 25.8 15.1 39 196-234 17-70 (284)
127 PF01055 Glyco_hydro_31: Glyco 29.3 1.9E+02 0.0041 32.1 8.0 91 339-469 83-178 (441)
128 TIGR00510 lipA lipoate synthas 29.1 4E+02 0.0087 28.7 10.1 58 289-365 190-247 (302)
129 PF14871 GHL6: Hypothetical gl 28.8 1.5E+02 0.0033 28.0 6.1 42 196-237 1-65 (132)
130 PRK06256 biotin synthase; Vali 28.4 7.5E+02 0.016 26.4 14.1 22 195-216 91-115 (336)
131 PRK13586 1-(5-phosphoribosyl)- 28.3 3.6E+02 0.0077 27.8 9.2 69 196-282 31-108 (232)
132 cd06293 PBP1_LacI_like_11 Liga 28.3 3.5E+02 0.0075 26.9 9.1 34 198-231 105-148 (269)
133 cd06418 GH25_BacA-like BacA is 28.2 6.6E+02 0.014 25.6 12.7 108 194-309 20-143 (212)
134 PRK14329 (dimethylallyl)adenos 28.1 9.3E+02 0.02 27.3 13.6 57 289-363 307-363 (467)
135 PRK05904 coproporphyrinogen II 28.0 2.6E+02 0.0056 30.6 8.6 19 292-310 212-230 (353)
136 CHL00041 rps11 ribosomal prote 27.7 1.4E+02 0.003 27.8 5.5 36 198-233 63-103 (116)
137 PRK07198 hypothetical protein; 27.6 53 0.0011 36.8 3.2 37 201-237 338-375 (418)
138 TIGR02026 BchE magnesium-proto 27.4 6E+02 0.013 29.0 11.7 43 195-237 222-277 (497)
139 cd02932 OYE_YqiM_FMN Old yello 27.2 8E+02 0.017 26.3 14.7 125 326-453 64-219 (336)
140 cd06549 GH18_trifunctional GH1 26.7 4E+02 0.0086 28.2 9.5 60 242-308 80-139 (298)
141 cd06544 GH18_narbonin Narbonin 26.7 6.7E+02 0.015 26.2 11.0 149 219-430 58-220 (253)
142 PRK05628 coproporphyrinogen II 26.6 2.6E+02 0.0056 30.5 8.3 19 291-309 221-239 (375)
143 KOG2263 Methionine synthase II 26.4 3.9E+02 0.0084 31.1 9.5 117 194-320 186-331 (765)
144 cd06275 PBP1_PurR Ligand-bindi 26.4 3.5E+02 0.0075 26.7 8.6 35 198-232 106-150 (269)
145 cd06283 PBP1_RegR_EndR_KdgR_li 26.3 4.2E+02 0.009 26.0 9.2 20 197-216 104-123 (267)
146 PRK09319 bifunctional 3,4-dihy 26.3 1E+02 0.0022 36.0 5.3 38 200-237 342-379 (555)
147 TIGR01233 lacG 6-phospho-beta- 26.2 1.8E+02 0.004 33.1 7.3 48 196-243 54-120 (467)
148 PRK10401 DNA-binding transcrip 26.1 6.4E+02 0.014 26.3 11.0 34 198-231 165-208 (346)
149 PF03102 NeuB: NeuB family; I 26.0 1.7E+02 0.0037 30.5 6.5 54 199-256 80-136 (241)
150 PRK14333 (dimethylallyl)adenos 25.8 7.4E+02 0.016 27.9 12.0 59 289-365 289-347 (448)
151 cd06296 PBP1_CatR_like Ligand- 25.5 6.6E+02 0.014 24.7 10.8 34 199-232 107-150 (270)
152 PRK14336 (dimethylallyl)adenos 25.2 6.3E+02 0.014 28.2 11.2 21 208-228 205-230 (418)
153 TIGR00640 acid_CoA_mut_C methy 25.2 1.9E+02 0.0042 27.2 6.1 44 195-238 40-95 (132)
154 PLN03059 beta-galactosidase; P 25.1 6.8E+02 0.015 31.0 11.9 117 199-319 63-223 (840)
155 TIGR00089 RNA modification enz 24.9 6.2E+02 0.013 28.1 11.0 25 339-364 306-330 (429)
156 COG0807 RibA GTP cyclohydrolas 24.7 1.3E+02 0.0028 30.6 5.1 38 201-238 133-170 (193)
157 cd06592 GH31_glucosidase_KIAA1 24.7 5E+02 0.011 27.6 9.8 26 339-364 70-95 (303)
158 PRK13209 L-xylulose 5-phosphat 24.6 7.7E+02 0.017 25.2 19.9 38 196-233 22-74 (283)
159 PF00977 His_biosynth: Histidi 24.4 2.6E+02 0.0055 28.6 7.3 70 195-282 29-108 (229)
160 PRK14325 (dimethylallyl)adenos 24.1 1E+03 0.022 26.6 13.2 25 338-363 315-339 (444)
161 PRK05723 flavodoxin; Provision 23.9 6.2E+02 0.013 24.2 9.4 113 182-309 2-118 (151)
162 PRK07094 biotin synthase; Prov 23.8 8.8E+02 0.019 25.6 14.3 42 195-236 70-124 (323)
163 PRK14340 (dimethylallyl)adenos 23.8 1.1E+03 0.023 26.7 14.0 138 195-363 178-338 (445)
164 PTZ00129 40S ribosomal protein 23.6 1.7E+02 0.0038 28.5 5.5 37 198-234 79-128 (149)
165 PF13547 GTA_TIM: GTA TIM-barr 23.4 47 0.001 35.7 1.7 59 268-331 18-82 (299)
166 COG2730 BglC Endoglucanase [Ca 23.3 6.1E+02 0.013 28.2 10.6 108 198-307 76-219 (407)
167 cd06288 PBP1_sucrose_transcrip 23.1 3.7E+02 0.0081 26.4 8.1 35 197-231 104-148 (269)
168 PF00411 Ribosomal_S11: Riboso 23.0 1.2E+02 0.0026 27.7 4.2 36 199-234 51-91 (110)
169 cd06290 PBP1_LacI_like_9 Ligan 22.6 4.4E+02 0.0096 26.0 8.6 21 197-217 103-123 (265)
170 PRK09249 coproporphyrinogen II 22.5 7E+02 0.015 28.1 11.0 20 290-309 262-281 (453)
171 PTZ00090 40S ribosomal protein 22.5 1.6E+02 0.0035 30.6 5.2 37 200-236 172-212 (233)
172 PRK14326 (dimethylallyl)adenos 22.3 3.8E+02 0.0082 30.9 8.9 54 184-237 210-275 (502)
173 PF00150 Cellulase: Cellulase 22.3 2.3E+02 0.0051 28.4 6.6 67 400-476 64-134 (281)
174 PRK14335 (dimethylallyl)adenos 22.1 1.2E+03 0.025 26.4 12.8 58 289-364 292-349 (455)
175 cd00854 NagA N-acetylglucosami 22.1 1.4E+02 0.003 32.6 5.1 44 194-238 145-194 (374)
176 cd01575 PBP1_GntR Ligand-bindi 22.1 7E+02 0.015 24.4 9.8 18 199-216 106-123 (268)
177 cd04723 HisA_HisF Phosphoribos 22.1 3.5E+02 0.0077 27.6 7.8 68 196-281 36-112 (233)
178 PRK12756 phospho-2-dehydro-3-d 22.0 1.1E+03 0.024 26.2 12.4 69 392-467 237-305 (348)
179 PRK14114 1-(5-phosphoribosyl)- 22.0 3.6E+02 0.0077 28.0 7.9 69 195-281 30-107 (241)
180 TIGR03820 lys_2_3_AblA lysine- 21.7 4.7E+02 0.01 29.6 9.2 26 194-219 137-166 (417)
181 PF02579 Nitro_FeMo-Co: Dinitr 21.6 2E+02 0.0044 24.2 5.1 41 197-237 42-82 (94)
182 PRK08208 coproporphyrinogen II 21.4 3.3E+02 0.0071 30.5 8.0 20 290-309 247-266 (430)
183 PRK14336 (dimethylallyl)adenos 21.2 1E+03 0.022 26.6 11.8 57 289-363 258-314 (418)
184 cd03412 CbiK_N Anaerobic cobal 21.0 4.5E+02 0.0097 24.4 7.6 46 192-237 53-108 (127)
185 PRK06294 coproporphyrinogen II 21.0 4.4E+02 0.0096 28.8 8.8 20 291-310 216-235 (370)
186 COG2355 Zn-dependent dipeptida 20.9 9.8E+02 0.021 26.2 11.1 68 189-258 47-121 (313)
187 cd07937 DRE_TIM_PC_TC_5S Pyruv 20.8 8.4E+02 0.018 25.6 10.5 37 201-237 97-139 (275)
188 cd06274 PBP1_FruR Ligand bindi 20.7 6.9E+02 0.015 24.6 9.5 126 198-348 105-244 (264)
189 TIGR02494 PFLE_PFLC glycyl-rad 20.7 9.6E+02 0.021 24.9 11.7 26 339-364 232-258 (295)
190 PRK14024 phosphoribosyl isomer 20.6 5.2E+02 0.011 26.5 8.7 69 196-282 33-110 (241)
191 PRK14565 triosephosphate isome 20.6 2.9E+02 0.0064 28.8 6.9 97 201-306 78-186 (237)
192 cd07944 DRE_TIM_HOA_like 4-hyd 20.3 6.9E+02 0.015 26.1 9.7 36 203-238 90-131 (266)
193 cd06295 PBP1_CelR Ligand bindi 20.3 8.3E+02 0.018 24.2 10.0 33 199-231 115-157 (275)
No 1
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 17 GH17 from CAZY comprises enzymes with several known activities; endo-1,3-beta-glucosidase (3.2.1.39 from EC); lichenase (3.2.1.73 from EC); exo-1,3-glucanase (3.2.1.58 from EC). Currently these enzymes have only been found in plants and in fungi. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1AQ0_B 1GHR_A 1GHS_B 2CYG_A 3UR8_A 3UR7_B 3EM5_C 3F55_D.
Probab=100.00 E-value=1.6e-83 Score=673.17 Aligned_cols=308 Identities=39% Similarity=0.747 Sum_probs=252.9
Q ss_pred ceeeeCCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhccc
Q 045344 183 VGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRW 262 (627)
Q Consensus 183 iGVnYG~~~~nlpsp~~Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y 262 (627)
||||||+.|++||+|.+|++|||+++|++||||++|+.||+||++|||+|+|+|+|++|+++++++..|..||+++|.+|
T Consensus 1 iGvnyG~~~~nlp~p~~vv~l~ks~~i~~vri~d~~~~iL~a~a~S~i~v~v~vpN~~l~~la~~~~~A~~Wv~~nv~~~ 80 (310)
T PF00332_consen 1 IGVNYGRVGNNLPSPCKVVSLLKSNGITKVRIYDADPSILRAFAGSGIEVMVGVPNEDLASLASSQSAAGSWVRTNVLPY 80 (310)
T ss_dssp EEEEE---SSS---HHHHHHHHHHTT--EEEESS--HHHHHHHTTS--EEEEEE-GGGHHHHHHHHHHHHHHHHHHTCTC
T ss_pred CeEeccCccCCCCCHHHHHHHHHhcccccEEeecCcHHHHHHHhcCCceeeeccChHHHHHhccCHHHHhhhhhhccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccc-cCCCCccccchhhHHH
Q 045344 263 VKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEG-TLPSDGVFRKDIKQHI 341 (627)
Q Consensus 263 ~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~-~pPS~g~F~~d~~~~l 341 (627)
+| .++|++|+||||++.... ...|||||+++|++|++++|+++|||+|++++++|.. ||||+|.|++++.++|
T Consensus 81 ~~--~~~i~~i~VGnEv~~~~~----~~~lvpAm~ni~~aL~~~~L~~~IkVst~~~~~vl~~s~PPS~g~F~~~~~~~~ 154 (310)
T PF00332_consen 81 LP--AVNIRYIAVGNEVLTGTD----NAYLVPAMQNIHNALTAAGLSDQIKVSTPHSMDVLSNSFPPSAGVFRSDIASVM 154 (310)
T ss_dssp TT--TSEEEEEEEEES-TCCSG----GGGHHHHHHHHHHHHHHTT-TTTSEEEEEEEGGGEEE-SSGGG-EESHHHHHHH
T ss_pred Cc--ccceeeeecccccccCcc----ceeeccHHHHHHHHHHhcCcCCcceeccccccccccccCCCccCcccccchhhh
Confidence 97 599999999999987532 2289999999999999999998999999999999998 9999999999999999
Q ss_pred HHHHHHhhhcCCCceeccCcccccCCCC-CCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEc
Q 045344 342 DNILKNLHDNKSPFIVNIYPFLSLYESP-DFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIG 420 (627)
Q Consensus 342 ~~lldFL~~t~sp~~vNiYPff~~~~~~-~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvIt 420 (627)
+++++||.+|+||||+|+||||++..+| .|+|+||+|++....+ |++++|++|||+|+|++++||+|+|+++++||||
T Consensus 155 ~~~l~fL~~t~spf~vN~yPyfa~~~~~~~~~l~yAlf~~~~~~~-D~~~~y~nlfDa~~da~~~a~~~~g~~~~~vvv~ 233 (310)
T PF00332_consen 155 DPLLKFLDGTNSPFMVNVYPYFAYQNNPQNISLDYALFQPNSGVV-DGGLAYTNLFDAMVDAVYAAMEKLGFPNVPVVVG 233 (310)
T ss_dssp HHHHHHHHHHT--EEEE--HHHHHHHSTTTS-HHHHTT-SSS-SE-ETTEEESSHHHHHHHHHHHHHHTTT-TT--EEEE
T ss_pred hHHHHHhhccCCCceeccchhhhccCCcccCCccccccccccccc-ccchhhhHHHHHHHHHHHHHHHHhCCCCceeEEe
Confidence 9999999999999999999999999997 8999999999987555 9999999999999999999999999999999999
Q ss_pred eeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccccccCCCCCcccceeeeecCCCCccccc
Q 045344 421 EIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPGKFERHWGIFRFDGQPKFPID 500 (627)
Q Consensus 421 ETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~wK~~~pg~~Er~wGLF~~dgtpKy~l~ 500 (627)
||||||+|+..|++++|++|++++++|+. +|||+||+..+++||||||||+||++ ..+|||||||++||+|||+|+
T Consensus 234 ETGWPs~G~~~a~~~nA~~~~~nl~~~~~--~gt~~~~~~~~~~y~F~~FdE~~K~~--~~~E~~wGlf~~d~~~ky~~~ 309 (310)
T PF00332_consen 234 ETGWPSAGDPGATPENAQAYNQNLIKHVL--KGTPLRPGNGIDVYIFEAFDENWKPG--PEVERHWGLFYPDGTPKYDLD 309 (310)
T ss_dssp EE---SSSSTTCSHHHHHHHHHHHHHHCC--GBBSSSBSS---EEES-SB--TTSSS--SGGGGG--SB-TTSSBSS---
T ss_pred ccccccCCCCCCCcchhHHHHHHHHHHHh--CCCcccCCCCCeEEEEEEecCcCCCC--CcccceeeeECCCCCeecCCC
Confidence 99999999999999999999999999997 59999999889999999999999973 249999999999999999998
Q ss_pred c
Q 045344 501 F 501 (627)
Q Consensus 501 ~ 501 (627)
|
T Consensus 310 f 310 (310)
T PF00332_consen 310 F 310 (310)
T ss_dssp -
T ss_pred C
Confidence 6
No 2
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=8.8e-40 Score=329.25 Aligned_cols=261 Identities=17% Similarity=0.223 Sum_probs=200.4
Q ss_pred cccccccCCCCccceeeeCCCCCC--CCCHHHHHHHHHh-CCC-CEEEEecCCh----HHHHHHHhcCCEEEEeeCCChh
Q 045344 170 VDNFDYAHIKPVDVGVNWGNLASH--PLPAKIIVQMLKD-NGI-KRAKLFDADE----TSVKELAHTGIEVMVAIPNGML 241 (627)
Q Consensus 170 ~~~~~~~~~~~~~iGVnYG~~~~n--lpsp~~Vv~lLks-~~i-~~VRlYdaD~----~VL~Ala~tgIkV~VGV~n~~l 241 (627)
+..|+-+...-+..+|+||++.++ +++.++|...|.. ..+ ..||+|.+|| .|++|+...|++|+||||..+
T Consensus 33 ~ss~ss~~sa~g~~~f~l~~~n~dGtCKSa~~~~sDLe~l~~~t~~IR~Y~sDCn~le~v~pAa~~~g~kv~lGiw~td- 111 (305)
T COG5309 33 VSSSSSRASASGFLAFTLGPYNDDGTCKSADQVASDLELLASYTHSIRTYGSDCNTLENVLPAAEASGFKVFLGIWPTD- 111 (305)
T ss_pred ccCcccccccccccceeccccCCCCCCcCHHHHHhHHHHhccCCceEEEeeccchhhhhhHHHHHhcCceEEEEEeecc-
Confidence 344444455677899999999765 8999999765543 233 3999999997 588899999999999999632
Q ss_pred hhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccc
Q 045344 242 FDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNAD 321 (627)
Q Consensus 242 ~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~ 321 (627)
.+. ..+++-++..++++.. .+.|++|+||||+|+|.+ ..+++|+.+|..+|.+|+++|++ +||+|++++.
T Consensus 112 -d~~---~~~~~til~ay~~~~~--~d~v~~v~VGnEal~r~~--~tasql~~~I~~vrsav~~agy~--gpV~T~dsw~ 181 (305)
T COG5309 112 -DIH---DAVEKTILSAYLPYNG--WDDVTTVTVGNEALNRND--LTASQLIEYIDDVRSAVKEAGYD--GPVTTVDSWN 181 (305)
T ss_pred -chh---hhHHHHHHHHHhccCC--CCceEEEEechhhhhcCC--CCHHHHHHHHHHHHHHHHhcCCC--Cceeecccce
Confidence 121 1222245566777753 578999999999999854 55899999999999999999997 5789999998
Q ss_pred cccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHH
Q 045344 322 VYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYD 401 (627)
Q Consensus 322 vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvD 401 (627)
++.. .+.|+...||+ |+|.||||+... +.+. .+ .+|-.|+.
T Consensus 182 ~~~~------------np~l~~~SDfi-------a~N~~aYwd~~~-----------------~a~~--~~-~f~~~q~e 222 (305)
T COG5309 182 VVIN------------NPELCQASDFI-------AANAHAYWDGQT-----------------VANA--AG-TFLLEQLE 222 (305)
T ss_pred eeeC------------ChHHhhhhhhh-------hcccchhccccc-----------------hhhh--hh-HHHHHHHH
Confidence 8764 24567777887 999999998642 1121 11 23444566
Q ss_pred HHHHHHHHhCCCCceEEEceeccCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccccccC
Q 045344 402 TLLSALKKAGYPDMKIIIGEIGWPTDGHK----AATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSI 477 (627)
Q Consensus 402 av~~Am~k~g~~~~~VvItETGWPS~G~~----~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~wK~~ 477 (627)
.|+.+. | ..|+|+|+||||||+|.. .||++||++|++++++.+++. | +++|+||+|||+||..
T Consensus 223 ~vqsa~---g-~~k~~~v~EtGWPS~G~~~G~a~pS~anq~~~~~~i~~~~~~~-G--------~d~fvfeAFdd~WK~~ 289 (305)
T COG5309 223 RVQSAC---G-TKKTVWVTETGWPSDGRTYGSAVPSVANQKIAVQEILNALRSC-G--------YDVFVFEAFDDDWKAD 289 (305)
T ss_pred HHHHhc---C-CCccEEEeeccCCCCCCccCCcCCChhHHHHHHHHHHhhhhcc-C--------ccEEEeeeccccccCc
Confidence 665542 2 349999999999999985 499999999999999988753 3 7999999999999985
Q ss_pred CCCCcccceeeeecCC
Q 045344 478 APGKFERHWGIFRFDG 493 (627)
Q Consensus 478 ~pg~~Er~wGLF~~dg 493 (627)
+.-.+|+|||+|..++
T Consensus 290 ~~y~VEkywGv~~s~~ 305 (305)
T COG5309 290 GSYGVEKYWGVLSSDR 305 (305)
T ss_pred cccchhhceeeeccCC
Confidence 4436999999998775
No 3
>smart00768 X8 Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges.
Probab=99.93 E-value=1.8e-26 Score=200.02 Aligned_cols=83 Identities=41% Similarity=0.742 Sum_probs=79.8
Q ss_pred eeEEecCCCCchhhHHHHHHhhccc-ccccccCCCCCCCCC-CcccchhHHHhHHHhhcCCCCCCCCCCCceeEEecCCC
Q 045344 522 KWCVLDKGVTNFDLVDQQLFKACQE-GDCTATEPGSSCSGL-DNLTKVSYAFNMYFQMNQQVNKACDFEGLALITDKNAS 599 (627)
Q Consensus 522 ~wCVak~~~~~~~~l~~~ldyaCg~-~dCs~I~~~gscy~~-~~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~it~~dpS 599 (627)
+|||+++++ ++++||++|+|||++ +||++|+++|+||+| ++++|||||||+|||++++..++|||+|+|+|+++|||
T Consensus 1 ~wCv~~~~~-~~~~l~~~~~yaCg~~~dC~~I~~~g~c~~~~~~~~~aS~a~N~YYq~~~~~~~aC~F~G~a~~~~~~ps 79 (85)
T smart00768 1 LWCVAKPDA-DEAALQAALDYACGQGADCTAIQPGGSCYSPNTVKAHASYAFNSYYQKQGQSSGACDFGGTATITTTDPS 79 (85)
T ss_pred CccccCCCC-CHHHHHHHHHHHhcCCCCccccCCCCcccCCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCceEEEecCCC
Confidence 599999999 689999999999999 999999999999999 57899999999999999999999999999999999999
Q ss_pred CCceee
Q 045344 600 VGNCLF 605 (627)
Q Consensus 600 ~~sC~~ 605 (627)
+++|+|
T Consensus 80 ~~~C~~ 85 (85)
T smart00768 80 TGSCKF 85 (85)
T ss_pred CCccCC
Confidence 999986
No 4
>PF07983 X8: X8 domain; InterPro: IPR012946 The X8 domain [] contains 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen [] as well as at the C terminus of family 17 glycosyl hydrolases []. This domain may be involved in carbohydrate binding.; PDB: 2JON_A 2W61_A 2W62_A 2W63_A.
Probab=99.81 E-value=1.6e-20 Score=160.48 Aligned_cols=70 Identities=31% Similarity=0.612 Sum_probs=59.7
Q ss_pred eeEEecCCCCchhhHHHHHHhhccc--ccccccCCCCCC-----CCC-CcccchhHHHhHHHhhcCCCCCCCCCCCcee
Q 045344 522 KWCVLDKGVTNFDLVDQQLFKACQE--GDCTATEPGSSC-----SGL-DNLTKVSYAFNMYFQMNQQVNKACDFEGLAL 592 (627)
Q Consensus 522 ~wCVak~~~~~~~~l~~~ldyaCg~--~dCs~I~~~gsc-----y~~-~~~~~aSyAfN~YYq~~~~~~~aCdF~G~A~ 592 (627)
+|||++|++ ++++|+++|+|||++ +||++|+++++. |++ ++++|||||||+|||++++.+.+|||+|+||
T Consensus 1 l~Cv~~~~~-~~~~l~~~l~~aC~~~~~dC~~I~~~g~~G~YG~~S~C~~~~~lSya~N~YY~~~~~~~~~C~F~G~at 78 (78)
T PF07983_consen 1 LWCVAKPDA-DDKELQDLLDYACGQGGVDCSPIQPNGTTGVYGAYSMCSPRQHLSYAFNQYYQKQGRNSSACDFSGNAT 78 (78)
T ss_dssp -EEEE-TTS--HHHHHHHHHHHTTT-SSSCCCC-EETTTTEE-TTTTS-CCHHHHHHHHHHHHHHTSSCCG-SS-STEE
T ss_pred CcceeCCCC-CHHHHHHHHHHHHcCCCCChhhhCCCCcccccccccCCCHHHHHHHHHHHHHHHcCCCCCcCCCCCCCC
Confidence 699999999 789999999999998 999999999995 455 5699999999999999999999999999997
No 5
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane. It includes Candida albicans (Yeast) pH-regulated protein, which is required for apical growth and plays a role in morphogenesis and Saccharomyces cerevisiae glycolipid anchored surface protein.; PDB: 2W61_A 2W62_A 2W63_A.
Probab=99.22 E-value=1.1e-10 Score=122.52 Aligned_cols=195 Identities=19% Similarity=0.274 Sum_probs=99.7
Q ss_pred ccceeeeCCCCC-------CCCC-HH---HHHHHHHhCCCCEEEEecCCh-----HHHHHHHhcCCEEEEeeCCC--hhh
Q 045344 181 VDVGVNWGNLAS-------HPLP-AK---IIVQMLKDNGIKRAKLFDADE-----TSVKELAHTGIEVMVAIPNG--MLF 242 (627)
Q Consensus 181 ~~iGVnYG~~~~-------nlps-p~---~Vv~lLks~~i~~VRlYdaD~-----~VL~Ala~tgIkV~VGV~n~--~l~ 242 (627)
...||.|-+.+. ++.+ ++ .-+.+||++|+..||+|..|| ..|++|++.||-|+|.|... .|.
T Consensus 28 ~ikGVaYQp~~~~~~~~~~DPLad~~~C~rDi~~l~~LgiNtIRVY~vdp~~nHd~CM~~~~~aGIYvi~Dl~~p~~sI~ 107 (314)
T PF03198_consen 28 FIKGVAYQPGGSSEPSNYIDPLADPEACKRDIPLLKELGINTIRVYSVDPSKNHDECMSAFADAGIYVILDLNTPNGSIN 107 (314)
T ss_dssp -EEEEE----------SS--GGG-HHHHHHHHHHHHHHT-SEEEES---TTS--HHHHHHHHHTT-EEEEES-BTTBS--
T ss_pred EEeeEEcccCCCCCCccCcCcccCHHHHHHhHHHHHHcCCCEEEEEEeCCCCCHHHHHHHHHhCCCEEEEecCCCCcccc
Confidence 346999998766 2222 22 224588999999999999885 68999999999999999753 222
Q ss_pred hhhhchHHHHHH-------HHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEe
Q 045344 243 DMAVDYSNAQNW-------VKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKAT 315 (627)
Q Consensus 243 ~la~s~~~A~~W-------v~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVs 315 (627)
.. ++ +..| +.+-|..+.. -+++-+..|||||+........++.+-.+++.+|+-+++.++ ++|+|+
T Consensus 108 r~--~P--~~sw~~~l~~~~~~vid~fa~--Y~N~LgFf~GNEVin~~~~t~aap~vKAavRD~K~Yi~~~~~-R~IPVG 180 (314)
T PF03198_consen 108 RS--DP--APSWNTDLLDRYFAVIDAFAK--YDNTLGFFAGNEVINDASNTNAAPYVKAAVRDMKAYIKSKGY-RSIPVG 180 (314)
T ss_dssp TT--S--------HHHHHHHHHHHHHHTT---TTEEEEEEEESSS-STT-GGGHHHHHHHHHHHHHHHHHSSS-----EE
T ss_pred CC--CC--cCCCCHHHHHHHHHHHHHhcc--CCceEEEEecceeecCCCCcccHHHHHHHHHHHHHHHHhcCC-CCCcee
Confidence 11 11 1122 1122333321 268889999999997654444578888999999999999988 569998
Q ss_pred cccccccccccCCCCccccchhhHHHHHHHHHhh-----hcCCCceeccCcccccCCCCCCCccccccccCCcccccCCc
Q 045344 316 VPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLH-----DNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNH 390 (627)
Q Consensus 316 T~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~-----~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~ 390 (627)
-+-+- + .+...++.+||. +.-+.|++|.|-|... +.|+.+
T Consensus 181 YsaaD-~---------------~~~r~~~a~Yl~Cg~~~~~iDf~g~N~Y~WCg~----------Stf~~S--------- 225 (314)
T PF03198_consen 181 YSAAD-D---------------AEIRQDLANYLNCGDDDERIDFFGLNSYEWCGD----------STFETS--------- 225 (314)
T ss_dssp EEE-------------------TTTHHHHHHHTTBTT-----S-EEEEE----SS------------HHHH---------
T ss_pred EEccC-C---------------hhHHHHHHHHhcCCCcccccceeeeccceecCC----------Cccccc---------
Confidence 55321 1 111234556664 2346789999998753 123211
Q ss_pred cchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCC
Q 045344 391 RYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDG 428 (627)
Q Consensus 391 ~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G 428 (627)
.| +.+...++ ++ .+||+.+|.|.-+..
T Consensus 226 Gy--------~~l~~~f~--~y-~vPvffSEyGCn~~~ 252 (314)
T PF03198_consen 226 GY--------DRLTKEFS--NY-SVPVFFSEYGCNTVT 252 (314)
T ss_dssp SH--------HHHHHHHT--T--SS-EEEEEE---SSS
T ss_pred cH--------HHHHHHhh--CC-CCCeEEcccCCCCCC
Confidence 12 22222222 34 599999999998654
No 6
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=99.18 E-value=2.9e-09 Score=113.72 Aligned_cols=245 Identities=19% Similarity=0.250 Sum_probs=121.2
Q ss_pred HHHHHHHHHhCCCCEE--EEec-C------C-hHH---HHHHHhcCCEEEEeeCCCh---------hh------hhhhch
Q 045344 197 AKIIVQMLKDNGIKRA--KLFD-A------D-ETS---VKELAHTGIEVMVAIPNGM---------LF------DMAVDY 248 (627)
Q Consensus 197 p~~Vv~lLks~~i~~V--RlYd-a------D-~~V---L~Ala~tgIkV~VGV~n~~---------l~------~la~s~ 248 (627)
+.+++++||..|+..| |+|- + | ..+ .+.++..||+|+|.+--.+ ++ ++++-.
T Consensus 26 ~~d~~~ilk~~G~N~vRlRvwv~P~~~g~~~~~~~~~~akrak~~Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~ 105 (332)
T PF07745_consen 26 EKDLFQILKDHGVNAVRLRVWVNPYDGGYNDLEDVIALAKRAKAAGMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLA 105 (332)
T ss_dssp B--HHHHHHHTT--EEEEEE-SS-TTTTTTSHHHHHHHHHHHHHTT-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHH
T ss_pred CCCHHHHHHhcCCCeEEEEeccCCcccccCCHHHHHHHHHHHHHCCCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHH
Confidence 4678999999999755 5552 1 1 133 4556789999999985321 11 111111
Q ss_pred HHHHHHHHHhhcccccCCCceEEEEEeccccccc--CC--CccchhhHHHHHHHHHHHHHHcCCCcceEEeccccccccc
Q 045344 249 SNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLK--SY--NDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYE 324 (627)
Q Consensus 249 ~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~--~~--~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~ 324 (627)
++..++.++-+..+ ...++.++.|-||||+-.. +. ...-++.+...++...+++|+..- .+||-.-.. ....
T Consensus 106 ~~v~~yT~~vl~~l-~~~G~~pd~VQVGNEin~Gmlwp~g~~~~~~~~a~ll~ag~~AVr~~~p--~~kV~lH~~-~~~~ 181 (332)
T PF07745_consen 106 KAVYDYTKDVLQAL-KAAGVTPDMVQVGNEINNGMLWPDGKPSNWDNLAKLLNAGIKAVREVDP--NIKVMLHLA-NGGD 181 (332)
T ss_dssp HHHHHHHHHHHHHH-HHTT--ESEEEESSSGGGESTBTTTCTT-HHHHHHHHHHHHHHHHTHSS--TSEEEEEES--TTS
T ss_pred HHHHHHHHHHHHHH-HHCCCCccEEEeCccccccccCcCCCccCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEC-CCCc
Confidence 22333433333332 2235788899999997432 11 112256677777777777777553 355432211 0000
Q ss_pred ccCCCCccccchhhHHHHHHHHHhhhcC---CCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHH
Q 045344 325 GTLPSDGVFRKDIKQHIDNILKNLHDNK---SPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYD 401 (627)
Q Consensus 325 ~~pPS~g~F~~d~~~~l~~lldFL~~t~---sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvD 401 (627)
...++-..+.|...+ +.+++..||||... ++...+
T Consensus 182 -------------~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~-----------------------------l~~l~~ 219 (332)
T PF07745_consen 182 -------------NDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGT-----------------------------LEDLKN 219 (332)
T ss_dssp -------------HHHHHHHHHHHHHTTGG-SEEEEEE-STTST------------------------------HHHHHH
T ss_pred -------------hHHHHHHHHHHHhcCCCcceEEEecCCCCcch-----------------------------HHHHHH
Confidence 122333444454444 68899999999641 111222
Q ss_pred HHHHHHHHhCCCCceEEEceeccCCCCC-----------------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccE
Q 045344 402 TLLSALKKAGYPDMKIIIGEIGWPTDGH-----------------KAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDV 464 (627)
Q Consensus 402 av~~Am~k~g~~~~~VvItETGWPS~G~-----------------~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~ 464 (627)
.+....++. +|+|+|.|||||..-. -.+|++.|+.|+++|++.+.+- |- +..+-+
T Consensus 220 ~l~~l~~ry---~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~---p~--~~g~Gv 291 (332)
T PF07745_consen 220 NLNDLASRY---GKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV---PN--GGGLGV 291 (332)
T ss_dssp HHHHHHHHH---T-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS-------TTEEEE
T ss_pred HHHHHHHHh---CCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh---cc--CCeEEE
Confidence 222222343 5899999999999821 1268999999999999998762 11 112455
Q ss_pred EEEeeeccccccCC------CC-CcccceeeeecCCCCcccc
Q 045344 465 YLFGFLDEDAKSIA------PG-KFERHWGIFRFDGQPKFPI 499 (627)
Q Consensus 465 yiFelFDE~wK~~~------pg-~~Er~wGLF~~dgtpKy~l 499 (627)
|+-|. .|-+.. .| .+|.. +||+.+|++--.|
T Consensus 292 fYWeP---~w~~~~~~~~~~~g~~w~n~-~lFD~~g~~l~sl 329 (332)
T PF07745_consen 292 FYWEP---AWIPVENGWDWGGGSSWDNQ-ALFDFNGNALPSL 329 (332)
T ss_dssp EEE-T---T-GGGTTHHHHTTTSSSSBG-SSB-TTSBB-GGG
T ss_pred Eeecc---ccccCCcccccCCCCCcccc-ccCCCCCCCchHh
Confidence 65442 232211 12 22322 7888887764443
No 7
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=98.23 E-value=1.8e-05 Score=82.81 Aligned_cols=222 Identities=18% Similarity=0.280 Sum_probs=115.3
Q ss_pred CHHHHHHHHHhCCCCEEE--Ee----cCC--------hHHH------HHHHhcCCEEEEeeCCChh-hhhhhchHHHHHH
Q 045344 196 PAKIIVQMLKDNGIKRAK--LF----DAD--------ETSV------KELAHTGIEVMVAIPNGML-FDMAVDYSNAQNW 254 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VR--lY----daD--------~~VL------~Ala~tgIkV~VGV~n~~l-~~la~s~~~A~~W 254 (627)
-.+++++.||..|+..|| || |.+ .++. +-++..||||++-..-.+. ..-+. +..-.+|
T Consensus 64 ~~qD~~~iLK~~GvNyvRlRvwndP~dsngn~yggGnnD~~k~ieiakRAk~~GmKVl~dFHYSDfwaDPak-Q~kPkaW 142 (403)
T COG3867 64 VRQDALQILKNHGVNYVRLRVWNDPYDSNGNGYGGGNNDLKKAIEIAKRAKNLGMKVLLDFHYSDFWADPAK-QKKPKAW 142 (403)
T ss_pred hHHHHHHHHHHcCcCeEEEEEecCCccCCCCccCCCcchHHHHHHHHHHHHhcCcEEEeeccchhhccChhh-cCCcHHh
Confidence 357888999999987555 55 333 2332 3345789999998853221 00000 0000112
Q ss_pred H-------HHh-------hcccccCCCceEEEEEeccccccc--CCCcc--chhhHHHHHHHHHHHHHHcCCCcceEEec
Q 045344 255 V-------KEN-------VTRWVKDGSVKLKYVAVGNEPFLK--SYNDS--FVKDTFPALKNVQQALVEAGHGKMVKATV 316 (627)
Q Consensus 255 v-------~~n-------V~~y~p~~~t~I~~I~VGNEvL~~--~~~~~--~~~~Llpam~nI~~aL~~agl~~~IkVsT 316 (627)
. ++. +...+.+.+..+..|-||||.-.. +..+. -...+...+..-.+++|... ..|||--
T Consensus 143 ~~l~fe~lk~avy~yTk~~l~~m~~eGi~pdmVQVGNEtn~gflwp~Ge~~~f~k~a~L~n~g~~avrev~--p~ikv~l 220 (403)
T COG3867 143 ENLNFEQLKKAVYSYTKYVLTTMKKEGILPDMVQVGNETNGGFLWPDGEGRNFDKMAALLNAGIRAVREVS--PTIKVAL 220 (403)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHcCCCccceEeccccCCceeccCCCCcChHHHHHHHHHHhhhhhhcC--CCceEEE
Confidence 1 111 111122235678889999997421 11111 13344444444455555533 3465542
Q ss_pred ccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhh
Q 045344 317 PLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVL 396 (627)
Q Consensus 317 ~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlf 396 (627)
-.+ . |--.+.|+-=...+-+.-+|| +.|++--||||...-+ + |
T Consensus 221 Hla-----~-g~~n~~y~~~fd~ltk~nvdf-----DVig~SyYpyWhgtl~------------------n--------L 263 (403)
T COG3867 221 HLA-----E-GENNSLYRWIFDELTKRNVDF-----DVIGSSYYPYWHGTLN------------------N--------L 263 (403)
T ss_pred Eec-----C-CCCCchhhHHHHHHHHcCCCc-----eEEeeeccccccCcHH------------------H--------H
Confidence 221 1 112233431111222223333 5678899999975210 0 1
Q ss_pred hhhHHHHHHHHHHhCCCCceEEEceecc--------------CCCCCC---CCCHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 045344 397 DGNYDTLLSALKKAGYPDMKIIIGEIGW--------------PTDGHK---AATSQSAQKFYDGLFKKLAKRDGTPLRPG 459 (627)
Q Consensus 397 DaqvDav~~Am~k~g~~~~~VvItETGW--------------PS~G~~---~AS~~NA~~y~~nli~~~~s~~GTP~rPg 459 (627)
...++.+.. + | .|.|+|.||+. |+.+.. ..+++-|++|.+++|+.+.. .|.-.|
T Consensus 264 ~~nl~dia~---r--Y-~K~VmV~Etay~yTlEdgDg~~Nt~~~~~~t~~ypitVQGQat~vrDvie~V~n---vp~~~G 334 (403)
T COG3867 264 TTNLNDIAS---R--Y-HKDVMVVETAYTYTLEDGDGHENTFPSSEQTGGYPITVQGQATFVRDVIEAVKN---VPKSNG 334 (403)
T ss_pred HhHHHHHHH---H--h-cCeEEEEEecceeeeccCCCCCCcCCcccccCCCceEEechhhHHHHHHHHHHh---CCCCCc
Confidence 111222211 1 2 58999999998 666543 37889999999999999874 344334
Q ss_pred CcccEEEEe
Q 045344 460 TEFDVYLFG 468 (627)
Q Consensus 460 ~~ie~yiFe 468 (627)
+-+|+.|
T Consensus 335 --lGvFYWE 341 (403)
T COG3867 335 --LGVFYWE 341 (403)
T ss_pred --eEEEEec
Confidence 4566554
No 8
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=98.09 E-value=0.00029 Score=71.45 Aligned_cols=119 Identities=18% Similarity=0.126 Sum_probs=75.8
Q ss_pred CHHHHHHHHHhCCCCEEEEecC-------------Ch-------HHHHHHHhcCCEEEEeeCCC-hh---hhhhhchHHH
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDA-------------DE-------TSVKELAHTGIEVMVAIPNG-ML---FDMAVDYSNA 251 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYda-------------D~-------~VL~Ala~tgIkV~VGV~n~-~l---~~la~s~~~A 251 (627)
..++.++.|++.|++.|||.-. +. .+|++++..||+|+|.+... .. ..........
T Consensus 22 ~~~~~~~~~~~~G~n~VRi~v~~~~~~~~~~~~~~~~~~~~~ld~~v~~a~~~gi~vild~h~~~~w~~~~~~~~~~~~~ 101 (281)
T PF00150_consen 22 ITEADFDQLKALGFNTVRIPVGWEAYQEPNPGYNYDETYLARLDRIVDAAQAYGIYVILDLHNAPGWANGGDGYGNNDTA 101 (281)
T ss_dssp SHHHHHHHHHHTTESEEEEEEESTSTSTTSTTTSBTHHHHHHHHHHHHHHHHTT-EEEEEEEESTTCSSSTSTTTTHHHH
T ss_pred CHHHHHHHHHHCCCCEEEeCCCHHHhcCCCCCccccHHHHHHHHHHHHHHHhCCCeEEEEeccCccccccccccccchhh
Confidence 6788899999999999999732 11 57888899999999998753 00 0111111223
Q ss_pred HHHHHH---hhcccccCCCceEEEEEecccccccCCC----ccchhhHHHHHHHHHHHHHHcCCCcceEEe
Q 045344 252 QNWVKE---NVTRWVKDGSVKLKYVAVGNEPFLKSYN----DSFVKDTFPALKNVQQALVEAGHGKMVKAT 315 (627)
Q Consensus 252 ~~Wv~~---nV~~y~p~~~t~I~~I~VGNEvL~~~~~----~~~~~~Llpam~nI~~aL~~agl~~~IkVs 315 (627)
.+|+++ .|...+. ....|.++=+.||+...... ......+.+.++.+..+|++.+-...|-|.
T Consensus 102 ~~~~~~~~~~la~~y~-~~~~v~~~el~NEP~~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~~~~~i~~~ 171 (281)
T PF00150_consen 102 QAWFKSFWRALAKRYK-DNPPVVGWELWNEPNGGNDDANWNAQNPADWQDWYQRAIDAIRAADPNHLIIVG 171 (281)
T ss_dssp HHHHHHHHHHHHHHHT-TTTTTEEEESSSSGCSTTSTTTTSHHHTHHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHhhhhhhccccC-CCCcEEEEEecCCccccCCccccccccchhhhhHHHHHHHHHHhcCCcceeecC
Confidence 333332 2333332 12457799999999875321 112367788999999999999876544444
No 9
>PRK10150 beta-D-glucuronidase; Provisional
Probab=98.02 E-value=0.00048 Score=79.25 Aligned_cols=241 Identities=17% Similarity=0.111 Sum_probs=131.5
Q ss_pred HHHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEeeCCCh----h-----------hhhh------hchHHHHHHHH
Q 045344 200 IVQMLKDNGIKRAKLFD--ADETSVKELAHTGIEVMVAIPNGM----L-----------FDMA------VDYSNAQNWVK 256 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYd--aD~~VL~Ala~tgIkV~VGV~n~~----l-----------~~la------~s~~~A~~Wv~ 256 (627)
.+++||+.|+..||+-. .++..+.++...||-|+.=+|... . +... +..+...+.++
T Consensus 318 d~~l~K~~G~N~vR~sh~p~~~~~~~~cD~~GllV~~E~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (604)
T PRK10150 318 DHNLMKWIGANSFRTSHYPYSEEMLDLADRHGIVVIDETPAVGLNLSFGAGLEAGNKPKETYSEEAVNGETQQAHLQAIR 397 (604)
T ss_pred HHHHHHHCCCCEEEeccCCCCHHHHHHHHhcCcEEEEecccccccccccccccccccccccccccccchhHHHHHHHHHH
Confidence 35688999999999943 357899999999999886554210 0 0000 01112223344
Q ss_pred HhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccch
Q 045344 257 ENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKD 336 (627)
Q Consensus 257 ~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d 336 (627)
+.|..+.- ...|..-++|||.-.. .+.....++.+.+.+++..-.+ +|+.+..+. . .|..
T Consensus 398 ~mv~r~~N--HPSIi~Ws~gNE~~~~------~~~~~~~~~~l~~~~k~~DptR--~vt~~~~~~---~-~~~~------ 457 (604)
T PRK10150 398 ELIARDKN--HPSVVMWSIANEPASR------EQGAREYFAPLAELTRKLDPTR--PVTCVNVMF---A-TPDT------ 457 (604)
T ss_pred HHHHhccC--CceEEEEeeccCCCcc------chhHHHHHHHHHHHHHhhCCCC--ceEEEeccc---C-Cccc------
Confidence 55555421 2356788899996432 1223344556666666655443 344432110 0 0100
Q ss_pred hhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCce
Q 045344 337 IKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMK 416 (627)
Q Consensus 337 ~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~ 416 (627)
..+.+++|++ +.|.|+=|-.. ..+ .+ .....|+..+... .++ + +||
T Consensus 458 --~~~~~~~Dv~-------~~N~Y~~wy~~-~~~----~~--------------~~~~~~~~~~~~~---~~~--~-~kP 503 (604)
T PRK10150 458 --DTVSDLVDVL-------CLNRYYGWYVD-SGD----LE--------------TAEKVLEKELLAW---QEK--L-HKP 503 (604)
T ss_pred --ccccCcccEE-------EEcccceecCC-CCC----HH--------------HHHHHHHHHHHHH---HHh--c-CCC
Confidence 0122345655 78887533110 000 00 0011222233221 111 2 799
Q ss_pred EEEceeccCCCCC------CCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccccccCCCCCcccceeeee
Q 045344 417 IIIGEIGWPTDGH------KAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPGKFERHWGIFR 490 (627)
Q Consensus 417 VvItETGWPS~G~------~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~wK~~~pg~~Er~wGLF~ 490 (627)
|+|+|.|+.+.-+ ..-+.+.|..|++...+.+.+ +|.. +-.||..+||-.+..+..-.-.-+.||++
T Consensus 504 ~~isEyg~~~~~~~h~~~~~~~~ee~q~~~~~~~~~~~~~------~p~~-~G~~iW~~~D~~~~~g~~~~~g~~~Gl~~ 576 (604)
T PRK10150 504 IIITEYGADTLAGLHSMYDDMWSEEYQCAFLDMYHRVFDR------VPAV-VGEQVWNFADFATSQGILRVGGNKKGIFT 576 (604)
T ss_pred EEEEccCCccccccccCCCCCCCHHHHHHHHHHHHHHHhc------CCce-EEEEEEeeeccCCCCCCcccCCCcceeEc
Confidence 9999999765321 235788899998887776653 3443 56899999995544211000124789999
Q ss_pred cCCCCcccccc
Q 045344 491 FDGQPKFPIDF 501 (627)
Q Consensus 491 ~dgtpKy~l~~ 501 (627)
.||+||-.+-+
T Consensus 577 ~dr~~k~~~~~ 587 (604)
T PRK10150 577 RDRQPKSAAFL 587 (604)
T ss_pred CCCCChHHHHH
Confidence 99999977644
No 10
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=97.74 E-value=0.0029 Score=65.17 Aligned_cols=81 Identities=21% Similarity=0.225 Sum_probs=55.7
Q ss_pred HHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeecc-ccccCCCC
Q 045344 402 TLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDE-DAKSIAPG 480 (627)
Q Consensus 402 av~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE-~wK~~~pg 480 (627)
.+...|++++--++||+|||..-|... +++.|+.+++.+++.+.+. |.. .-+++..+.|. .|.+
T Consensus 170 ~~~~~l~~~~~~g~pi~iTE~dv~~~~----~~~~qA~~~~~~l~~~~~~------p~v-~gi~~Wg~~d~~~W~~---- 234 (254)
T smart00633 170 EIRAALDRFASLGLEIQITELDISGYP----NPQAQAADYEEVFKACLAH------PAV-TGVTVWGVTDKYSWLD---- 234 (254)
T ss_pred HHHHHHHHHHHcCCceEEEEeecCCCC----cHHHHHHHHHHHHHHHHcC------CCe-eEEEEeCCccCCcccC----
Confidence 344455555545899999999999763 4478889999999988764 221 33555566653 3553
Q ss_pred CcccceeeeecCCCCcccc
Q 045344 481 KFERHWGIFRFDGQPKFPI 499 (627)
Q Consensus 481 ~~Er~wGLF~~dgtpKy~l 499 (627)
+.+-|||+.|++||-.+
T Consensus 235 --~~~~~L~d~~~~~kpa~ 251 (254)
T smart00633 235 --GGAPLLFDANYQPKPAY 251 (254)
T ss_pred --CCCceeECCCCCCChhh
Confidence 24679999999888554
No 11
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins.
Probab=97.27 E-value=0.01 Score=60.85 Aligned_cols=168 Identities=18% Similarity=0.156 Sum_probs=91.0
Q ss_pred ceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHH
Q 045344 268 VKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKN 347 (627)
Q Consensus 268 t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldF 347 (627)
..++.|.+=||+=........+++.+...+.+.+.|+. ..|||..|.....-. .+|.. .+-|.+.++-
T Consensus 64 ~~~~~ll~fNEPD~~~qsn~~p~~aa~~w~~~~~~~~~----~~~~l~sPa~~~~~~-~~~~g-------~~Wl~~F~~~ 131 (239)
T PF11790_consen 64 PGSKHLLGFNEPDLPGQSNMSPEEAAALWKQYMNPLRS----PGVKLGSPAVAFTNG-GTPGG-------LDWLSQFLSA 131 (239)
T ss_pred cCccceeeecCCCCCCCCCCCHHHHHHHHHHHHhHhhc----CCcEEECCeecccCC-CCCCc-------cHHHHHHHHh
Confidence 45778999999865432233466666666666666663 347887764311100 00111 1223333322
Q ss_pred hhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCC
Q 045344 348 LHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTD 427 (627)
Q Consensus 348 L~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~ 427 (627)
+...+.+=.|.+|+| .. + ++...+.|..+.++.+ +||+|||.|+..
T Consensus 132 ~~~~~~~D~iavH~Y-~~----~-------------------------~~~~~~~i~~~~~~~~---kPIWITEf~~~~- 177 (239)
T PF11790_consen 132 CARGCRVDFIAVHWY-GG----D-------------------------ADDFKDYIDDLHNRYG---KPIWITEFGCWN- 177 (239)
T ss_pred cccCCCccEEEEecC-Cc----C-------------------------HHHHHHHHHHHHHHhC---CCEEEEeecccC-
Confidence 221112222334443 10 0 1122223333333443 999999999877
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccccccCCCCCcccceeeeecCCC
Q 045344 428 GHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPGKFERHWGIFRFDGQ 494 (627)
Q Consensus 428 G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~wK~~~pg~~Er~wGLF~~dgt 494 (627)
+....+.+.++.|++..+..+.+. |.+ ..++||..++ .+. .....-.|+..+|+
T Consensus 178 ~~~~~~~~~~~~fl~~~~~~ld~~------~~V-eryawF~~~~-~~~-----~~~~~~~L~~~~G~ 231 (239)
T PF11790_consen 178 GGSQGSDEQQASFLRQALPWLDSQ------PYV-ERYAWFGFMN-DGS-----GVNPNSALLDADGS 231 (239)
T ss_pred CCCCCCHHHHHHHHHHHHHHHhcC------CCe-eEEEeccccc-ccC-----CCccccccccCCCC
Confidence 444678899999999999988653 343 4678888333 222 24555667777764
No 12
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 2 GH2 from CAZY comprises enzymes with several known activities; beta-galactosidase (3.2.1.23 from EC); beta-mannosidase (3.2.1.25 from EC); beta-glucuronidase (3.2.1.31 from EC). These enzymes contain a conserved glutamic acid residue which has been shown [], in Escherichia coli lacZ (P00722 from SWISSPROT), to be the general acid/base catalyst in the active site of the enzyme. Beta-galactosidase from E. coli has a TIM-barrel-like core surrounded by four other largely beta domains [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3CMG_A 3FN9_C 1YQ2_A 3K4D_B 3LPG_B 3LPF_A 3K4A_B 3K46_B 3GM8_A 3DEC_A ....
Probab=97.21 E-value=0.018 Score=60.32 Aligned_cols=98 Identities=22% Similarity=0.205 Sum_probs=54.1
Q ss_pred CccceeeeCCCCCC---CCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEeeCCChh---hh-----
Q 045344 180 PVDVGVNWGNLASH---PLPAKII---VQMLKDNGIKRAKLFD--ADETSVKELAHTGIEVMVAIPNGML---FD----- 243 (627)
Q Consensus 180 ~~~iGVnYG~~~~n---lpsp~~V---v~lLks~~i~~VRlYd--aD~~VL~Ala~tgIkV~VGV~n~~l---~~----- 243 (627)
.-..|||+...... .++.+++ +++||+.|+..||+.. .++..|.++...||-|+.-++.... ..
T Consensus 15 ~~l~Gv~~h~~~~~~g~a~~~~~~~~d~~l~k~~G~N~iR~~h~p~~~~~~~~cD~~GilV~~e~~~~~~~~~~~~~~~~ 94 (298)
T PF02836_consen 15 IFLRGVNRHQDYPGLGRAMPDEAMERDLELMKEMGFNAIRTHHYPPSPRFYDLCDELGILVWQEIPLEGHGSWQDFGNCN 94 (298)
T ss_dssp E-EEEEEE-S-BTTTBT---HHHHHHHHHHHHHTT-SEEEETTS--SHHHHHHHHHHT-EEEEE-S-BSCTSSSSTSCTS
T ss_pred EEEEEEeeCcCcccccccCCHHHHHHHHHHHHhcCcceEEcccccCcHHHHHHHhhcCCEEEEeccccccCccccCCccc
Confidence 34569998864322 2344444 4578999999999964 3578999999999999988765110 00
Q ss_pred -hhhc---hHHHHHHHHHhhcccccCCCceEEEEEecccc
Q 045344 244 -MAVD---YSNAQNWVKENVTRWVKDGSVKLKYVAVGNEP 279 (627)
Q Consensus 244 -la~s---~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEv 279 (627)
.+.+ .+.+.+.+++.|..+.- ...|..=++|||.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~v~~~~N--HPSIi~W~~gNE~ 132 (298)
T PF02836_consen 95 YDADDPEFRENAEQELREMVRRDRN--HPSIIMWSLGNES 132 (298)
T ss_dssp CTTTSGGHHHHHHHHHHHHHHHHTT---TTEEEEEEEESS
T ss_pred cCCCCHHHHHHHHHHHHHHHHcCcC--cCchheeecCccC
Confidence 0111 12334445555554421 1246677899998
No 13
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=97.02 E-value=0.0065 Score=67.86 Aligned_cols=274 Identities=18% Similarity=0.215 Sum_probs=127.1
Q ss_pred HHHHHHHHHhCCCCEEEEec------C-------C-------hHHHHHHHhcCCEEEEeeCCChhhhhh------hchHH
Q 045344 197 AKIIVQMLKDNGIKRAKLFD------A-------D-------ETSVKELAHTGIEVMVAIPNGMLFDMA------VDYSN 250 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd------a-------D-------~~VL~Ala~tgIkV~VGV~n~~l~~la------~s~~~ 250 (627)
.++.++|||++|++..|+-- + + ..+|.+|+..||+.+|.+.--+++..- .+.+.
T Consensus 60 y~eDi~l~~~lg~~~yRfsi~W~Ri~P~g~~g~~n~~~~~~Y~~~i~~l~~~gi~P~vtL~H~~~P~~l~~~ggw~~~~~ 139 (455)
T PF00232_consen 60 YKEDIALMKELGVNAYRFSISWSRIFPDGFEGKVNEEGLDFYRDLIDELLENGIEPIVTLYHFDLPLWLEDYGGWLNRET 139 (455)
T ss_dssp HHHHHHHHHHHT-SEEEEE--HHHHSTTSSSSSS-HHHHHHHHHHHHHHHHTT-EEEEEEESS--BHHHHHHTGGGSTHH
T ss_pred hhHHHHHHHhhccceeeeecchhheeecccccccCHhHhhhhHHHHHHHHhhccceeeeeeecccccceeecccccCHHH
Confidence 56788999999999999852 1 1 168899999999999999754443321 11222
Q ss_pred HHHH---HHHhhcccccCCCceEEEEEecccccccC---C------Cc-c-------chhhHHHHHHHHHHHHHHcCCCc
Q 045344 251 AQNW---VKENVTRWVKDGSVKLKYVAVGNEPFLKS---Y------ND-S-------FVKDTFPALKNVQQALVEAGHGK 310 (627)
Q Consensus 251 A~~W---v~~nV~~y~p~~~t~I~~I~VGNEvL~~~---~------~~-~-------~~~~Llpam~nI~~aL~~agl~~ 310 (627)
++.+ .+..+..| +++|+.-+.=||+..-. + .+ . ....++-|-..+.+++++....
T Consensus 140 ~~~F~~Ya~~~~~~~----gd~V~~w~T~NEp~~~~~~~y~~g~~~p~~~~~~~~~~~~h~~l~AHa~A~~~~~~~~~~- 214 (455)
T PF00232_consen 140 VDWFARYAEFVFERF----GDRVKYWITFNEPNVFALLGYLYGGFPPGRDSLKAFYQAAHNLLLAHAKAVKAIKEKYPD- 214 (455)
T ss_dssp HHHHHHHHHHHHHHH----TTTBSEEEEEETHHHHHHHHHTSSSSTTCSSTHHHHHHHHHHHHHHHHHHHHHHHHHTCT-
T ss_pred HHHHHHHHHHHHHHh----CCCcceEEeccccceeeccccccccccccccccchhhHHHhhHHHHHHHHHHHHhhcccc-
Confidence 2222 12223333 36788888889986421 0 00 0 0122444444555666766643
Q ss_pred ceEEecccccccccc---c---------------------CCCCccccchhhHHHH----------HHHHHhhhcCCCce
Q 045344 311 MVKATVPLNADVYEG---T---------------------LPSDGVFRKDIKQHID----------NILKNLHDNKSPFI 356 (627)
Q Consensus 311 ~IkVsT~~s~~vl~~---~---------------------pPS~g~F~~d~~~~l~----------~lldFL~~t~sp~~ 356 (627)
.||+..+....... . |--.|.|...+...+. +-+..|..+-|+++
T Consensus 215 -~~IGi~~~~~~~~P~~~~~~d~~~Aa~~~~~~~n~~f~dpi~~G~YP~~~~~~~~~~~~lp~ft~ed~~~ikg~~DFlG 293 (455)
T PF00232_consen 215 -GKIGIALNFSPFYPLSPSPEDDVAAAERADEFHNGWFLDPIFKGDYPEEMKEYLGERGILPEFTEEDKELIKGSIDFLG 293 (455)
T ss_dssp -SEEEEEEEEEEEEESSSSHHHHHHHHHHHHHHHTHHHHHHHHHSSSEHHHHHHHGGGTSSTTSGHHHHHHHTTTTSEEE
T ss_pred -eEEeccccccccCCCCccchhhHHHHHHHHHHhhcccccCchhhcCChHHhhccccccccccccchhhhcccccchhhh
Confidence 45555544322110 0 1111222111111111 11233345567888
Q ss_pred eccCcccccCCCC--CCCccccc---cccC---CcccccCCc-cchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCC
Q 045344 357 VNIYPFLSLYESP--DFPVEYAF---FEEG---AKGLQDKNH-RYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTD 427 (627)
Q Consensus 357 vNiYPff~~~~~~--~i~ldyAl---F~~~---~~~v~D~g~-~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~ 427 (627)
||-|.=.--...+ ..+..+.. +... .....+.+. .|- ..+.+.+...=+ -|+++||+|||.|++..
T Consensus 294 iNYYt~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~gw~i~P---~Gl~~~L~~l~~--~Y~~~pI~ITENG~~~~ 368 (455)
T PF00232_consen 294 INYYTSRYVRADPNPSSPPSYDSDAPFGQPYNPGGPTTDWGWEIYP---EGLRDVLRYLKD--RYGNPPIYITENGIGDP 368 (455)
T ss_dssp EEESEEEEEEESSSSTSSTTHEEEESEEEECETSSEBCTTSTBBET---HHHHHHHHHHHH--HHTSSEEEEEEE---EE
T ss_pred hccccceeeccCccccccccccCCccccccccccccccccCccccc---chHhhhhhhhcc--ccCCCcEEEeccccccc
Confidence 9887533222222 11111110 1000 000111111 111 112222222112 26679999999999988
Q ss_pred CCC--C-----CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccc-cccCCCCCcccceeeeecC
Q 045344 428 GHK--A-----ATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDED-AKSIAPGKFERHWGIFRFD 492 (627)
Q Consensus 428 G~~--~-----AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~-wK~~~pg~~Er~wGLF~~d 492 (627)
... . --++--+.++..+.+.+. .|-+. .-+|..++.|-- |.. +.++.|||++.|
T Consensus 369 ~~~~~~~v~D~~Ri~yl~~hl~~v~~Ai~--dGv~V-----~GY~~WSl~Dn~Ew~~----Gy~~rfGl~~VD 430 (455)
T PF00232_consen 369 DEVDDGKVDDDYRIDYLQDHLNQVLKAIE--DGVNV-----RGYFAWSLLDNFEWAE----GYKKRFGLVYVD 430 (455)
T ss_dssp TTCTTSHBSHHHHHHHHHHHHHHHHHHHH--TT-EE-----EEEEEETSB---BGGG----GGGSE--SEEEE
T ss_pred ccccccCcCcHHHHHHHHHHHHHHHhhhc--cCCCe-----eeEeeecccccccccc----CccCccCceEEc
Confidence 652 1 222334555555555553 34321 346778888843 443 479999999999
No 14
>TIGR03356 BGL beta-galactosidase.
Probab=96.99 E-value=0.12 Score=57.49 Aligned_cols=80 Identities=21% Similarity=0.273 Sum_probs=49.7
Q ss_pred HHHHHHHHHhCCCCEEEEec------------CC-------hHHHHHHHhcCCEEEEeeCCChhhh-hh-----hchHHH
Q 045344 197 AKIIVQMLKDNGIKRAKLFD------------AD-------ETSVKELAHTGIEVMVAIPNGMLFD-MA-----VDYSNA 251 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd------------aD-------~~VL~Ala~tgIkV~VGV~n~~l~~-la-----~s~~~A 251 (627)
.++-+++|+++|++++|+=- .+ ..+|.+|...||+++|.+.--+++. +. .+++..
T Consensus 56 y~eDi~l~~~~G~~~~R~si~Wsri~p~g~~~~n~~~~~~y~~~i~~l~~~gi~pivtL~Hfd~P~~l~~~gGw~~~~~~ 135 (427)
T TIGR03356 56 YEEDVALMKELGVDAYRFSIAWPRIFPEGTGPVNPKGLDFYDRLVDELLEAGIEPFVTLYHWDLPQALEDRGGWLNRDTA 135 (427)
T ss_pred HHHHHHHHHHcCCCeEEcccchhhcccCCCCCcCHHHHHHHHHHHHHHHHcCCeeEEeeccCCccHHHHhcCCCCChHHH
Confidence 46778899999999998731 12 1588999999999999996433332 11 112222
Q ss_pred H---HHHHHhhcccccCCCceEEEEEeccccc
Q 045344 252 Q---NWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 252 ~---~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
+ +..+.-+..| +..|+..+.=||+.
T Consensus 136 ~~f~~ya~~~~~~~----~d~v~~w~t~NEp~ 163 (427)
T TIGR03356 136 EWFAEYAAVVAERL----GDRVKHWITLNEPW 163 (427)
T ss_pred HHHHHHHHHHHHHh----CCcCCEEEEecCcc
Confidence 2 2222223333 24677777778875
No 15
>PLN02814 beta-glucosidase
Probab=95.62 E-value=1.9 Score=49.25 Aligned_cols=80 Identities=19% Similarity=0.164 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCCEEEEec------------CC-------hHHHHHHHhcCCEEEEeeCCChhhhhhhc-------hHH
Q 045344 197 AKIIVQMLKDNGIKRAKLFD------------AD-------ETSVKELAHTGIEVMVAIPNGMLFDMAVD-------YSN 250 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd------------aD-------~~VL~Ala~tgIkV~VGV~n~~l~~la~s-------~~~ 250 (627)
-++-++|||++|++.-|+=- .+ ..+|.+|.+.||+-+|.+.=-+++..-.+ .+.
T Consensus 79 y~EDI~L~k~lG~~ayRfSIsWsRI~P~G~g~~N~~Gl~fY~~lId~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~n~~~ 158 (504)
T PLN02814 79 YKEDVKLMAEMGLESFRFSISWSRLIPNGRGLINPKGLLFYKNLIKELRSHGIEPHVTLYHYDLPQSLEDEYGGWINRKI 158 (504)
T ss_pred hHHHHHHHHHcCCCEEEEeccHhhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhcCCcCChhH
Confidence 56778999999988877631 12 26889999999999999975555432111 122
Q ss_pred HH---HHHHHhhcccccCCCceEEEEEeccccc
Q 045344 251 AQ---NWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 251 A~---~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
++ +..+.-+..| +++|+.-+.=||+.
T Consensus 159 i~~F~~YA~~~f~~f----gdrVk~WiT~NEP~ 187 (504)
T PLN02814 159 IEDFTAFADVCFREF----GEDVKLWTTINEAT 187 (504)
T ss_pred HHHHHHHHHHHHHHh----CCcCCEEEeccccc
Confidence 22 1222223444 46788888788875
No 16
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=95.62 E-value=0.24 Score=53.83 Aligned_cols=83 Identities=14% Similarity=0.249 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCEEEEecC-----C-----------hHHHHHHHhcCCEEEEeeCCChhh--------hh--------
Q 045344 197 AKIIVQMLKDNGIKRAKLFDA-----D-----------ETSVKELAHTGIEVMVAIPNGMLF--------DM-------- 244 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYda-----D-----------~~VL~Ala~tgIkV~VGV~n~~l~--------~l-------- 244 (627)
-++.+++||..|++.|||... . -.+|..++..||+|+|+++....+ .+
T Consensus 12 ~~~d~~~m~~~G~n~vri~~~~W~~lEP~eG~ydF~~lD~~l~~a~~~Gi~viL~~~~~~~P~Wl~~~~Pe~~~~~~~g~ 91 (374)
T PF02449_consen 12 WEEDLRLMKEAGFNTVRIGEFSWSWLEPEEGQYDFSWLDRVLDLAAKHGIKVILGTPTAAPPAWLYDKYPEILPVDADGR 91 (374)
T ss_dssp HHHHHHHHHHHT-SEEEE-CCEHHHH-SBTTB---HHHHHHHHHHHCTT-EEEEEECTTTS-HHHHCCSGCCC-B-TTTS
T ss_pred HHHHHHHHHHcCCCEEEEEEechhhccCCCCeeecHHHHHHHHHHHhccCeEEEEecccccccchhhhcccccccCCCCC
Confidence 356678889999999998432 1 157888899999999999632111 00
Q ss_pred ----------h-hc---hHHHHHHHHHhhcccccCCCceEEEEEecccccc
Q 045344 245 ----------A-VD---YSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFL 281 (627)
Q Consensus 245 ----------a-~s---~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~ 281 (627)
. .+ .+.+.+.+++.+..|- ....|.++-|.||.-.
T Consensus 92 ~~~~g~~~~~~~~~p~yr~~~~~~~~~l~~~y~--~~p~vi~~~i~NE~~~ 140 (374)
T PF02449_consen 92 RRGFGSRQHYCPNSPAYREYARRFIRALAERYG--DHPAVIGWQIDNEPGY 140 (374)
T ss_dssp BEECCCSTT-HCCHHHHHHHHHHHHHHHHHHHT--TTTTEEEEEECCSTTC
T ss_pred cCccCCccccchhHHHHHHHHHHHHHHHHhhcc--ccceEEEEEeccccCc
Confidence 0 01 1234455554444442 2346889999999765
No 17
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=95.42 E-value=2.4 Score=47.98 Aligned_cols=80 Identities=11% Similarity=0.046 Sum_probs=50.3
Q ss_pred CHHHHHHHHHhCCCCEEEEec------------CC-------hHHHHHHHhcCCEEEEeeCCChhhhhhhc------hHH
Q 045344 196 PAKIIVQMLKDNGIKRAKLFD------------AD-------ETSVKELAHTGIEVMVAIPNGMLFDMAVD------YSN 250 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYd------------aD-------~~VL~Ala~tgIkV~VGV~n~~l~~la~s------~~~ 250 (627)
..++.++|||++|++..|+=- .+ ..+|.+|.+.||+-+|.|.--+++..-.+ .+.
T Consensus 55 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~~L~~~GGW~n~~~ 134 (469)
T PRK13511 55 RYPEDLKLAEEFGVNGIRISIAWSRIFPDGYGEVNPKGVEYYHRLFAECHKRHVEPFVTLHHFDTPEALHSNGDWLNREN 134 (469)
T ss_pred hhHHHHHHHHHhCCCEEEeeccHhhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCcHHHHHcCCCCCHHH
Confidence 357788999999988887631 12 26889999999999999975555432111 111
Q ss_pred H---HHHHHHhhcccccCCCceEEEEEeccccc
Q 045344 251 A---QNWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 251 A---~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
+ .+..+.-+..| ++ |+.-+.=||+.
T Consensus 135 v~~F~~YA~~~~~~f----gd-Vk~W~T~NEP~ 162 (469)
T PRK13511 135 IDHFVRYAEFCFEEF----PE-VKYWTTFNEIG 162 (469)
T ss_pred HHHHHHHHHHHHHHh----CC-CCEEEEccchh
Confidence 1 11222223333 36 77777778874
No 18
>PLN02998 beta-glucosidase
Probab=95.41 E-value=1.6 Score=49.93 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=50.5
Q ss_pred HHHHHHHHHhCCCCEEEEec------------CCh-------HHHHHHHhcCCEEEEeeCCChhhhhhhc-------hHH
Q 045344 197 AKIIVQMLKDNGIKRAKLFD------------ADE-------TSVKELAHTGIEVMVAIPNGMLFDMAVD-------YSN 250 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd------------aD~-------~VL~Ala~tgIkV~VGV~n~~l~~la~s-------~~~ 250 (627)
-++.++|||++|++.-|+=- .++ .+|.+|.+.||+-+|.+.--+++.--.+ .+.
T Consensus 84 y~EDi~lmk~lG~~~YRfSIsWsRI~P~G~g~vN~~gl~~Y~~lid~L~~~GIeP~VTL~H~dlP~~L~~~yGGW~n~~~ 163 (497)
T PLN02998 84 YKEDVKLMADMGLEAYRFSISWSRLLPSGRGPINPKGLQYYNNLIDELITHGIQPHVTLHHFDLPQALEDEYGGWLSQEI 163 (497)
T ss_pred hHHHHHHHHHcCCCeEEeeccHHhcCcCCCCCcCHHHHHHHHHHHHHHHHcCCceEEEecCCCCCHHHHHhhCCcCCchH
Confidence 56778999999988887631 122 6889999999999999975455432111 111
Q ss_pred H---HHHHHHhhcccccCCCceEEEEEeccccc
Q 045344 251 A---QNWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 251 A---~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
+ .+..+.-+..| +++|+.-+.=||+.
T Consensus 164 v~~F~~YA~~~~~~f----gdrVk~WiT~NEP~ 192 (497)
T PLN02998 164 VRDFTAYADTCFKEF----GDRVSHWTTINEVN 192 (497)
T ss_pred HHHHHHHHHHHHHHh----cCcCCEEEEccCcc
Confidence 1 12222223344 46777777778875
No 19
>PLN02849 beta-glucosidase
Probab=95.03 E-value=3.2 Score=47.49 Aligned_cols=80 Identities=16% Similarity=0.161 Sum_probs=50.1
Q ss_pred HHHHHHHHHhCCCCEEEEec------------CCh-------HHHHHHHhcCCEEEEeeCCChhhhhhhc-------hHH
Q 045344 197 AKIIVQMLKDNGIKRAKLFD------------ADE-------TSVKELAHTGIEVMVAIPNGMLFDMAVD-------YSN 250 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd------------aD~-------~VL~Ala~tgIkV~VGV~n~~l~~la~s-------~~~ 250 (627)
-++.++|||++|++.-|+=- .++ +++.+|.+.||+-+|.+.=-+++....+ .+.
T Consensus 81 Y~eDI~Lm~~lG~~aYRfSIsWsRI~P~G~g~vN~~gl~fY~~lid~l~~~GI~P~VTL~H~dlP~~L~~~yGGW~nr~~ 160 (503)
T PLN02849 81 YKEDVKLMVETGLDAFRFSISWSRLIPNGRGSVNPKGLQFYKNFIQELVKHGIEPHVTLFHYDHPQYLEDDYGGWINRRI 160 (503)
T ss_pred HHHHHHHHHHcCCCeEEEeccHHhcCcCCCCCCCHHHHHHHHHHHHHHHHcCCeEEEeecCCCCcHHHHHhcCCcCCchH
Confidence 46778999999988887631 122 6889999999999999975455432111 122
Q ss_pred HHHH---HHHhhcccccCCCceEEEEEeccccc
Q 045344 251 AQNW---VKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 251 A~~W---v~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
++.+ .+.-+..| +++|+.-+-=||+.
T Consensus 161 v~~F~~YA~~~f~~f----gDrVk~WiT~NEP~ 189 (503)
T PLN02849 161 IKDFTAYADVCFREF----GNHVKFWTTINEAN 189 (503)
T ss_pred HHHHHHHHHHHHHHh----cCcCCEEEEecchh
Confidence 2222 22223333 36777777778875
No 20
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=94.42 E-value=10 Score=43.15 Aligned_cols=81 Identities=19% Similarity=0.189 Sum_probs=49.8
Q ss_pred CHHHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEeeCCChhhh-hhh------ch
Q 045344 196 PAKIIVQMLKDNGIKRAKL-------FD------ADE-------TSVKELAHTGIEVMVAIPNGMLFD-MAV------DY 248 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRl-------Yd------aD~-------~VL~Ala~tgIkV~VGV~n~~l~~-la~------s~ 248 (627)
..++-++|||++|++..|+ +- .++ .+|.+|.+.||+.+|.+.=-+++. |.. ++
T Consensus 70 ry~EDI~Lm~elG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~H~dlP~~L~~~yGGW~n~ 149 (477)
T PRK15014 70 HYKEDIKLFAEMGFKCFRTSIAWTRIFPKGDEAQPNEEGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQQYGSWTNR 149 (477)
T ss_pred ccHHHHHHHHHcCCCEEEecccceeeccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCHHHHHhcCCCCCh
Confidence 4577889999998877765 21 122 688999999999999995434432 211 12
Q ss_pred HHHHH---HHHHhhcccccCCCceEEEEEeccccc
Q 045344 249 SNAQN---WVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 249 ~~A~~---Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
+.++. ..+.-+..| +++|+.-+.=||+.
T Consensus 150 ~~~~~F~~Ya~~~f~~f----gdrVk~WiT~NEp~ 180 (477)
T PRK15014 150 KVVDFFVRFAEVVFERY----KHKVKYWMTFNEIN 180 (477)
T ss_pred HHHHHHHHHHHHHHHHh----cCcCCEEEEecCcc
Confidence 22222 222223334 36777777778864
No 21
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=93.96 E-value=14 Score=42.06 Aligned_cols=48 Identities=23% Similarity=0.169 Sum_probs=36.2
Q ss_pred CHHHHHHHHHhCCCCEEEEec-------------CCh-------HHHHHHHhcCCEEEEeeCCChhhh
Q 045344 196 PAKIIVQMLKDNGIKRAKLFD-------------ADE-------TSVKELAHTGIEVMVAIPNGMLFD 243 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYd-------------aD~-------~VL~Ala~tgIkV~VGV~n~~l~~ 243 (627)
..++-++|||++|++..|+=- .++ .+|.+|.+.||+.+|.|.--+++.
T Consensus 74 ry~eDi~Lm~~lG~~aYRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lId~L~~~GI~P~VTL~H~dlP~ 141 (478)
T PRK09593 74 HYKEDIALFAEMGFKTYRMSIAWTRIFPKGDELEPNEAGLQFYEDIFKECHKYGIEPLVTITHFDCPM 141 (478)
T ss_pred hhHHHHHHHHHcCCCEEEEecchhhcccCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecccCCCH
Confidence 356788999999988887631 122 688999999999999997555543
No 22
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=91.65 E-value=29 Score=39.59 Aligned_cols=46 Identities=20% Similarity=0.196 Sum_probs=35.3
Q ss_pred HHHHHHHHHhCCCCEEEEe-------c------CCh-------HHHHHHHhcCCEEEEeeCCChhh
Q 045344 197 AKIIVQMLKDNGIKRAKLF-------D------ADE-------TSVKELAHTGIEVMVAIPNGMLF 242 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlY-------d------aD~-------~VL~Ala~tgIkV~VGV~n~~l~ 242 (627)
.++-++|||++|++..|+= = .++ .+|.+|.+.||+-+|.|.=-+++
T Consensus 69 y~eDi~Lm~~lG~~~yRfSIsWsRI~P~G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL~H~dlP 134 (476)
T PRK09589 69 YKEDIALFAEMGFKCFRTSIAWTRIFPQGDELEPNEEGLQFYDDLFDECLKQGIEPVVTLSHFEMP 134 (476)
T ss_pred hHHHHHHHHHcCCCEEEeccchhhcCcCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 5677899999998877753 1 122 68899999999999999755554
No 23
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=91.31 E-value=31 Score=39.34 Aligned_cols=47 Identities=19% Similarity=0.219 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCCCEEEE-------ec------CCh-------HHHHHHHhcCCEEEEeeCCChhhh
Q 045344 197 AKIIVQMLKDNGIKRAKL-------FD------ADE-------TSVKELAHTGIEVMVAIPNGMLFD 243 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRl-------Yd------aD~-------~VL~Ala~tgIkV~VGV~n~~l~~ 243 (627)
.++-++||+++|++..|+ +- .++ .+|.+|.+.||+++|.|.--+++.
T Consensus 73 y~eDi~l~~~lG~~~yR~si~WsRi~P~g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~H~~~P~ 139 (474)
T PRK09852 73 YKEDIALMAEMGFKVFRTSIAWSRLFPQGDELTPNQQGIAFYRSVFEECKKYGIEPLVTLCHFDVPM 139 (474)
T ss_pred hHHHHHHHHHcCCCeEEeeceeeeeeeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEeeCCCCCH
Confidence 467788999988877765 21 132 688999999999999997555543
No 24
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 39 GH39 from CAZY comprises enzymes with several known activities; alpha-L-iduronidase (3.2.1.76 from EC); beta-xylosidase (3.2.1.37 from EC). The most highly conserved regions in these enzymes are located in their N-terminal sections. These contain a glutamic acid residue which, on the basis of similarities with other families of glycosyl hydrolases [], probably acts as the proton donor in their catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BS9_D 2BFG_E 1W91_B 1UHV_D 1PX8_A.
Probab=90.58 E-value=13 Score=42.07 Aligned_cols=246 Identities=17% Similarity=0.286 Sum_probs=109.0
Q ss_pred HHHhCCCCEEEEecC--C---------------------hHHHHHHHhcCCEEEEeeCCChhhhhh--------------
Q 045344 203 MLKDNGIKRAKLFDA--D---------------------ETSVKELAHTGIEVMVAIPNGMLFDMA-------------- 245 (627)
Q Consensus 203 lLks~~i~~VRlYda--D---------------------~~VL~Ala~tgIkV~VGV~n~~l~~la-------------- 245 (627)
+.+..||+.||+... | -.+|..+...||+.+|-+.-. ...++
T Consensus 48 ~~~~~gf~yvR~h~l~~ddm~~~~~~~~~~~~~Ynf~~lD~i~D~l~~~g~~P~vel~f~-p~~~~~~~~~~~~~~~~~~ 126 (486)
T PF01229_consen 48 LQEELGFRYVRFHGLFSDDMMVYSESDEDGIPPYNFTYLDQILDFLLENGLKPFVELGFM-PMALASGYQTVFWYKGNIS 126 (486)
T ss_dssp HHCCS--SEEEES-TTSTTTT-EEEEETTEEEEE--HHHHHHHHHHHHCT-EEEEEE-SB--GGGBSS--EETTTTEE-S
T ss_pred HHhccCceEEEEEeeccCchhhccccccCCCCcCChHHHHHHHHHHHHcCCEEEEEEEec-hhhhcCCCCccccccCCcC
Confidence 334579999999842 1 157888899999988877521 11111
Q ss_pred --hchHH----HHHHHHHhhcccccCCCceEE--EEEecccccccCC-CccchhhHHHHHHHHHHHHHHcCCCcceEEec
Q 045344 246 --VDYSN----AQNWVKENVTRWVKDGSVKLK--YVAVGNEPFLKSY-NDSFVKDTFPALKNVQQALVEAGHGKMVKATV 316 (627)
Q Consensus 246 --~s~~~----A~~Wv~~nV~~y~p~~~t~I~--~I~VGNEvL~~~~-~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT 316 (627)
.+.+. ..++++.-+..| +...|+ ..=|=||+=.... ......+-+...+.+.++|+++. ..+||+-
T Consensus 127 pp~~~~~W~~lv~~~~~h~~~RY---G~~ev~~W~fEiWNEPd~~~f~~~~~~~ey~~ly~~~~~~iK~~~--p~~~vGG 201 (486)
T PF01229_consen 127 PPKDYEKWRDLVRAFARHYIDRY---GIEEVSTWYFEIWNEPDLKDFWWDGTPEEYFELYDATARAIKAVD--PELKVGG 201 (486)
T ss_dssp -BS-HHHHHHHHHHHHHHHHHHH---HHHHHTTSEEEESS-TTSTTTSGGG-HHHHHHHHHHHHHHHHHH---TTSEEEE
T ss_pred CcccHHHHHHHHHHHHHHHHhhc---CCccccceeEEeCcCCCcccccCCCCHHHHHHHHHHHHHHHHHhC--CCCcccC
Confidence 11122 222333223333 111222 4557888644321 11123445667777888888875 4588887
Q ss_pred ccccccccccCCCCccccchhhHHHHHHHHHhhhcC---CCceeccCcccccCCCCCCCccccccccCCcccccCCccch
Q 045344 317 PLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNK---SPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYT 393 (627)
Q Consensus 317 ~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~---sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~Yt 393 (627)
|-.. +. ....+...++|+.+.+ +++..|.||.-... .+. . .....-....
T Consensus 202 p~~~--~~------------~~~~~~~~l~~~~~~~~~~DfiS~H~y~~~~~~---~~~--------~--~~~~~~~~~~ 254 (486)
T PF01229_consen 202 PAFA--WA------------YDEWCEDFLEFCKGNNCPLDFISFHSYGTDSAE---DIN--------E--NMYERIEDSR 254 (486)
T ss_dssp EEEE--TT-------------THHHHHHHHHHHHCT---SEEEEEEE-BESES---E-S--------S---EEEEB--HH
T ss_pred cccc--cc------------HHHHHHHHHHHHhcCCCCCCEEEEEeccccccc---ccc--------h--hHHhhhhhHH
Confidence 7110 00 0123566677776554 34466666642210 000 0 0000000011
Q ss_pred hhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCC----CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEE---
Q 045344 394 NVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHK----AATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYL--- 466 (627)
Q Consensus 394 NlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~----~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yi--- 466 (627)
.++. ++..+...+...+.|.+++.++| |.+.-.. .-|.-.|+-..+.+++.... .++.|-
T Consensus 255 ~~~~-~~~~~~~~~~~e~~p~~~~~~tE--~n~~~~~~~~~~dt~~~aA~i~k~lL~~~~~----------~l~~~sywt 321 (486)
T PF01229_consen 255 RLFP-ELKETRPIINDEADPNLPLYITE--WNASISPRNPQHDTCFKAAYIAKNLLSNDGA----------FLDSFSYWT 321 (486)
T ss_dssp HHHH-HHHHHHHHHHTSSSTT--EEEEE--EES-SSTT-GGGGSHHHHHHHHH-HHHHGGG----------T-SEEEES-
T ss_pred HHHH-HHHHHHHHHhhccCCCCceeecc--cccccCCCcchhccccchhhHHHHHHHhhhh----------hhhhhhccc
Confidence 1222 22233344555678999999999 8876554 24554555444445554421 133322
Q ss_pred E-eeeccccccCCCCCcccceeeeecCCCCc
Q 045344 467 F-GFLDEDAKSIAPGKFERHWGIFRFDGQPK 496 (627)
Q Consensus 467 F-elFDE~wK~~~pg~~Er~wGLF~~dgtpK 496 (627)
| ..|.|.--+ ...+-.-|||+..+|-+|
T Consensus 322 ~sD~Fee~~~~--~~pf~ggfGLlt~~gI~K 350 (486)
T PF01229_consen 322 FSDRFEENGTP--RKPFHGGFGLLTKLGIPK 350 (486)
T ss_dssp SBS---TTSS---SSSSSS-S-SEECCCEE-
T ss_pred hhhhhhccCCC--CCceecchhhhhccCCCc
Confidence 1 234333221 112455599999998555
No 25
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=89.92 E-value=5 Score=43.77 Aligned_cols=102 Identities=12% Similarity=0.138 Sum_probs=59.5
Q ss_pred CCCEEEEecC-ChHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCc
Q 045344 208 GIKRAKLFDA-DETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYND 286 (627)
Q Consensus 208 ~i~~VRlYda-D~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~ 286 (627)
.+++|-+|+. +++++..++..|++|++..... .+ +.++++.-++|++..| .++. .-.+.+|-+==|-..... .
T Consensus 55 ~~tti~~~~~~~~~~~~~A~~~~v~v~~~~~~~-~~-~l~~~~~R~~fi~siv-~~~~--~~gfDGIdIDwE~p~~~~-~ 128 (358)
T cd02875 55 KVTTIAIFGDIDDELLCYAHSKGVRLVLKGDVP-LE-QISNPTYRTQWIQQKV-ELAK--SQFMDGINIDIEQPITKG-S 128 (358)
T ss_pred cceEEEecCCCCHHHHHHHHHcCCEEEEECccC-HH-HcCCHHHHHHHHHHHH-HHHH--HhCCCeEEEcccCCCCCC-c
Confidence 4788888864 7899998899999999864321 22 2234444444555433 2221 123456655555432111 1
Q ss_pred cchhhHHHHHHHHHHHHHHcCCCcceEEe
Q 045344 287 SFVKDTFPALKNVQQALVEAGHGKMVKAT 315 (627)
Q Consensus 287 ~~~~~Llpam~nI~~aL~~agl~~~IkVs 315 (627)
.....++..|+.+|++|++.+..-.|.|.
T Consensus 129 ~d~~~~t~llkelr~~l~~~~~~~~Lsva 157 (358)
T cd02875 129 PEYYALTELVKETTKAFKKENPGYQISFD 157 (358)
T ss_pred chHHHHHHHHHHHHHHHhhcCCCcEEEEE
Confidence 12456788999999999987643333333
No 26
>PRK10340 ebgA cryptic beta-D-galactosidase subunit alpha; Reviewed
Probab=85.61 E-value=45 Score=41.64 Aligned_cols=97 Identities=14% Similarity=0.088 Sum_probs=54.9
Q ss_pred cceeeeCCCCC---CCCCHHHH---HHHHHhCCCCEEEEecC--ChHHHHHHHhcCCEEEEeeCCChh--------hhhh
Q 045344 182 DVGVNWGNLAS---HPLPAKII---VQMLKDNGIKRAKLFDA--DETSVKELAHTGIEVMVAIPNGML--------FDMA 245 (627)
Q Consensus 182 ~iGVnYG~~~~---nlpsp~~V---v~lLks~~i~~VRlYda--D~~VL~Ala~tgIkV~VGV~n~~l--------~~la 245 (627)
..|||+-.... ...+++++ +++||+.++..||+-.- ++..+.++...||-|+.-++.+.. ..+.
T Consensus 336 lrGvnrh~~~p~~G~a~~~e~~~~dl~lmK~~g~NavR~sHyP~~~~fydlcDe~GllV~dE~~~e~~g~~~~~~~~~~~ 415 (1021)
T PRK10340 336 LHGVNRHDNDHRKGRAVGMDRVEKDIQLMKQHNINSVRTAHYPNDPRFYELCDIYGLFVMAETDVESHGFANVGDISRIT 415 (1021)
T ss_pred EEEeecCCCCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHCCCEEEECCcccccCccccccccccc
Confidence 35787643211 12344443 56889999999998642 467899999999998875431100 0111
Q ss_pred hch---HHHHHHHHHhhcccccCCCceEEEEEeccccc
Q 045344 246 VDY---SNAQNWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 246 ~s~---~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
.++ ++..+.+++.|.... ....|..-++|||.-
T Consensus 416 ~~p~~~~~~~~~~~~mV~Rdr--NHPSIi~WslGNE~~ 451 (1021)
T PRK10340 416 DDPQWEKVYVDRIVRHIHAQK--NHPSIIIWSLGNESG 451 (1021)
T ss_pred CCHHHHHHHHHHHHHHHHhCC--CCCEEEEEECccCcc
Confidence 221 111233444454431 113566778899974
No 27
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=85.25 E-value=2.2 Score=48.21 Aligned_cols=187 Identities=15% Similarity=0.162 Sum_probs=99.2
Q ss_pred HHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCc
Q 045344 252 QNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDG 331 (627)
Q Consensus 252 ~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g 331 (627)
.+.|..-|.+|- ....|.+-+.-||.|.+.. .....++...+.+...|+..+-..-|.|+ +...-|..|.|-.+
T Consensus 123 kkyvedlVk~yk--~~ptI~gw~l~Ne~lv~~p--~s~N~f~~w~~emy~yiK~ldd~hlvsvG--D~~sp~~~~~pyN~ 196 (587)
T COG3934 123 KKYVEDLVKPYK--LDPTIAGWALRNEPLVEAP--ISVNNFWDWSGEMYAYIKWLDDGHLVSVG--DPASPWPQYAPYNA 196 (587)
T ss_pred HHHHHHHhhhhc--cChHHHHHHhcCCcccccc--CChhHHHHHHHHHHHHhhccCCCCeeecC--CcCCcccccCCccc
Confidence 456666677662 2346777778899877532 34677888888888888877754434444 43333444445444
Q ss_pred cccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhC
Q 045344 332 VFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAG 411 (627)
Q Consensus 332 ~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g 411 (627)
.|. +|| -..++||+|.. ++-+...+..+ ...+|-- +.+
T Consensus 197 r~~----------vDy-------a~~hLY~hyd~--sl~~r~s~~yg------------------~~~l~i~----~~~- 234 (587)
T COG3934 197 RFY----------VDY-------AANHLYRHYDT--SLVSRVSTVYG------------------KPYLDIP----TIM- 234 (587)
T ss_pred cee----------ecc-------ccchhhhhccC--Chhheeeeeec------------------chhhccc----hhc-
Confidence 442 343 36789997653 22011111111 1111111 011
Q ss_pred CCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccccccCCCC---Ccccceee
Q 045344 412 YPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDEDAKSIAPG---KFERHWGI 488 (627)
Q Consensus 412 ~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~wK~~~pg---~~Er~wGL 488 (627)
+-+||+.-|-|-|++=... +.+.|.- +++.+....|- | --..-|+=|-+--.. .|. .-|-.|||
T Consensus 235 -g~~pV~leefGfsta~g~e----~s~ayfi-w~~lal~~ggd----G--aLiwclsdf~~gsdd-~ey~w~p~el~fgi 301 (587)
T COG3934 235 -GWQPVNLEEFGFSTAFGQE----NSPAYFI-WIRLALDTGGD----G--ALIWCLSDFHLGSDD-SEYTWGPMELEFGI 301 (587)
T ss_pred -ccceeeccccCCccccccc----ccchhhh-hhhhHHhhcCC----c--eEEEEecCCccCCCC-CCCccccccceeee
Confidence 3489999999999985432 2223221 22222222120 1 112234444321111 122 35778999
Q ss_pred eecCCCCcccc
Q 045344 489 FRFDGQPKFPI 499 (627)
Q Consensus 489 F~~dgtpKy~l 499 (627)
.+.|+++|+.+
T Consensus 302 Iradgpek~~a 312 (587)
T COG3934 302 IRADGPEKIDA 312 (587)
T ss_pred ecCCCchhhhH
Confidence 99999999975
No 28
>PRK09525 lacZ beta-D-galactosidase; Reviewed
Probab=84.31 E-value=74 Score=39.87 Aligned_cols=97 Identities=13% Similarity=0.071 Sum_probs=56.3
Q ss_pred cceeeeCCCC---CCCCCHHHH---HHHHHhCCCCEEEEec--CChHHHHHHHhcCCEEEEeeCCChh-----hhhhhch
Q 045344 182 DVGVNWGNLA---SHPLPAKII---VQMLKDNGIKRAKLFD--ADETSVKELAHTGIEVMVAIPNGML-----FDMAVDY 248 (627)
Q Consensus 182 ~iGVnYG~~~---~nlpsp~~V---v~lLks~~i~~VRlYd--aD~~VL~Ala~tgIkV~VGV~n~~l-----~~la~s~ 248 (627)
..|||+-... ....+++++ +++||..++..||+-. .++..+.++...||-|+.-++-+.. ..+..++
T Consensus 352 lrGvn~h~~~p~~G~a~t~e~~~~di~lmK~~g~NaVR~sHyP~~p~fydlcDe~GilV~dE~~~e~hg~~~~~~~~~dp 431 (1027)
T PRK09525 352 IRGVNRHEHHPEHGQVMDEETMVQDILLMKQHNFNAVRCSHYPNHPLWYELCDRYGLYVVDEANIETHGMVPMNRLSDDP 431 (1027)
T ss_pred EEEeEccccCcccCccCCHHHHHHHHHHHHHCCCCEEEecCCCCCHHHHHHHHHcCCEEEEecCccccCCccccCCCCCH
Confidence 3578765321 122455544 5678999999999954 3578999999999988876543210 0111222
Q ss_pred ---HHHHHHHHHhhcccccCCCceEEEEEeccccc
Q 045344 249 ---SNAQNWVKENVTRWVKDGSVKLKYVAVGNEPF 280 (627)
Q Consensus 249 ---~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL 280 (627)
++..+.+++.|.... -...|..-++|||.-
T Consensus 432 ~~~~~~~~~~~~mV~Rdr--NHPSIi~WSlgNE~~ 464 (1027)
T PRK09525 432 RWLPAMSERVTRMVQRDR--NHPSIIIWSLGNESG 464 (1027)
T ss_pred HHHHHHHHHHHHHHHhCC--CCCEEEEEeCccCCC
Confidence 122223344444331 123577788999963
No 29
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 10 GH10 from CAZY comprises enzymes with a number of known activities; xylanase (3.2.1.8 from EC); endo-1,3-beta-xylanase (3.2.1.32 from EC); cellobiohydrolase (3.2.1.91 from EC). These enzymes were formerly known as cellulase family F. The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases (3.2.1.4 from EC), cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family F [] or as the glycosyl hydrolases family 10 []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1UQZ_A 1UQY_A 1UR2_A 1UR1_A 2CNC_A 1OD8_A 1E0W_A 1E0V_A 1V0M_A 1E0X_B ....
Probab=77.53 E-value=34 Score=36.74 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhCCCCceEEEceeccCCCCCC--CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccc-ccc
Q 045344 400 YDTLLSALKKAGYPDMKIIIGEIGWPTDGHK--AATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDED-AKS 476 (627)
Q Consensus 400 vDav~~Am~k~g~~~~~VvItETGWPS~G~~--~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~-wK~ 476 (627)
.+.+..+|+++.--+++|.|||.-=...... .+..+-++.+++.+++.+.+.. |.....+.+..+.|.. |.+
T Consensus 219 ~~~i~~~l~~~~~~Gl~i~ITElDv~~~~~~~~~~~~~~qA~~~~~~~~~~~~~~-----~~~v~git~Wg~~D~~sW~~ 293 (320)
T PF00331_consen 219 PEQIWNALDRFASLGLPIHITELDVRDDDNPPDAEEEEAQAEYYRDFLTACFSHP-----PAAVEGITWWGFTDGYSWRP 293 (320)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEEEEEESSSTTSCHHHHHHHHHHHHHHHHHHHHTT-----HCTEEEEEESSSBTTGSTTG
T ss_pred HHHHHHHHHHHHHcCCceEEEeeeecCCCCCcchHHHHHHHHHHHHHHHHHHhCC-----ccCCCEEEEECCCCCCcccC
Confidence 4445555666555569999999865554432 2446778889999999888742 0111234445566644 664
Q ss_pred CCCCCcccceeeeecCCCCccc
Q 045344 477 IAPGKFERHWGIFRFDGQPKFP 498 (627)
Q Consensus 477 ~~pg~~Er~wGLF~~dgtpKy~ 498 (627)
.. .-.+=+||+.+.+||-.
T Consensus 294 ~~---~~~~~~lfd~~~~~Kpa 312 (320)
T PF00331_consen 294 DT---PPDRPLLFDEDYQPKPA 312 (320)
T ss_dssp GH---SEG--SSB-TTSBB-HH
T ss_pred CC---CCCCCeeECCCcCCCHH
Confidence 20 01233688888888854
No 30
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
Probab=77.42 E-value=9.4 Score=41.39 Aligned_cols=84 Identities=13% Similarity=0.122 Sum_probs=34.8
Q ss_pred HHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhccccc---CCCceEEEEEecccccccCCCc-cchhhHHHHHHH
Q 045344 223 KELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVK---DGSVKLKYVAVGNEPFLKSYND-SFVKDTFPALKN 298 (627)
Q Consensus 223 ~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p---~~~t~I~~I~VGNEvL~~~~~~-~~~~~Llpam~n 298 (627)
+-++.+|++|+.|+-.-.-.....+....-.|=-++.+.++. ...-.|.+-=.|||+-..+-.. -.+.++......
T Consensus 116 ~F~~~tG~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~ 195 (319)
T PF03662_consen 116 NFAQKTGLKLIFGLNALLGRRQLADRDWDGSWNSSNAQSLLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQ 195 (319)
T ss_dssp HHHHHHT-EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTTEEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH--
T ss_pred HHHHHhCCEEEEEecccCCCCCCCCCCcCCCCChHHHHHHHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHHHH
Confidence 444579999999996311011111113345677776444332 1223577778899975432111 125667777777
Q ss_pred HHHHHHHc
Q 045344 299 VQQALVEA 306 (627)
Q Consensus 299 I~~aL~~a 306 (627)
+|+.|++.
T Consensus 196 Lr~il~~i 203 (319)
T PF03662_consen 196 LRKILNEI 203 (319)
T ss_dssp -HHHHHHH
T ss_pred HHHHHHHH
Confidence 77777663
No 31
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=73.19 E-value=34 Score=35.16 Aligned_cols=81 Identities=16% Similarity=0.202 Sum_probs=45.4
Q ss_pred HHHHHHHhcCCEEEEeeCCChh---hhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHH
Q 045344 220 TSVKELAHTGIEVMVAIPNGML---FDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPAL 296 (627)
Q Consensus 220 ~VL~Ala~tgIkV~VGV~n~~l---~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam 296 (627)
.++++++..++||++.|..... ..+..+++..+++++..| .++. .-.+.+|-+==|-... . ...++..|
T Consensus 50 ~~~~~~~~~~~kvl~sigg~~~~~~~~~~~~~~~r~~fi~~lv-~~~~--~~~~DGIdiDwE~~~~----~-~~~~~~fv 121 (253)
T cd06545 50 SVVNAAHAHNVKILISLAGGSPPEFTAALNDPAKRKALVDKII-NYVV--SYNLDGIDVDLEGPDV----T-FGDYLVFI 121 (253)
T ss_pred HHHHHHHhCCCEEEEEEcCCCCCcchhhhcCHHHHHHHHHHHH-HHHH--HhCCCceeEEeeccCc----c-HhHHHHHH
Confidence 4566777789999998875321 234445444444444332 2211 1124455544454321 1 34567789
Q ss_pred HHHHHHHHHcCC
Q 045344 297 KNVQQALVEAGH 308 (627)
Q Consensus 297 ~nI~~aL~~agl 308 (627)
+.+|++|++.++
T Consensus 122 ~~Lr~~l~~~~~ 133 (253)
T cd06545 122 RALYAALKKEGK 133 (253)
T ss_pred HHHHHHHhhcCc
Confidence 999999987664
No 32
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=72.94 E-value=26 Score=37.75 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=43.7
Q ss_pred HHHHh--cCCEEEEeeCC--C---hhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccC-CCccchhhHHH
Q 045344 223 KELAH--TGIEVMVAIPN--G---MLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKS-YNDSFVKDTFP 294 (627)
Q Consensus 223 ~Ala~--tgIkV~VGV~n--~---~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~-~~~~~~~~Llp 294 (627)
.+++. .++||+|.|.- . ....++++++..+++++..| .++. .-.+.+|-+==|..... ........++.
T Consensus 62 ~~lk~~~p~lkvlisiGG~~~~~~~f~~~~~~~~~r~~fi~~iv-~~l~--~~~~DGidiDwE~p~~~~~~~~d~~~~~~ 138 (362)
T cd02872 62 NALKEKNPNLKTLLAIGGWNFGSAKFSAMAASPENRKTFIKSAI-AFLR--KYGFDGLDLDWEYPGQRGGPPEDKENFVT 138 (362)
T ss_pred HHHHhhCCCceEEEEEcCCCCCcchhHHHhCCHHHHHHHHHHHH-HHHH--HcCCCCeeeeeeccccCCCCHHHHHHHHH
Confidence 34444 58999999853 1 23455555544444444332 2221 11344555443432210 00122456889
Q ss_pred HHHHHHHHHHHcC
Q 045344 295 ALKNVQQALVEAG 307 (627)
Q Consensus 295 am~nI~~aL~~ag 307 (627)
.|+.+|++|++.+
T Consensus 139 ll~~lr~~l~~~~ 151 (362)
T cd02872 139 LLKELREAFEPEA 151 (362)
T ss_pred HHHHHHHHHHhhC
Confidence 9999999999873
No 33
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=71.70 E-value=25 Score=37.14 Aligned_cols=83 Identities=16% Similarity=0.142 Sum_probs=50.3
Q ss_pred hHHHHHHHhcCCEEEEeeCCCh--------hhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchh
Q 045344 219 ETSVKELAHTGIEVMVAIPNGM--------LFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVK 290 (627)
Q Consensus 219 ~~VL~Ala~tgIkV~VGV~n~~--------l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~ 290 (627)
+.++.+++..++||++.|.... ...+.++++.-..+++ .|..++. .-.+.+|-+-=|.+.. ....
T Consensus 48 ~~~~~~a~~~~~kv~~~i~~~~~~~~~~~~~~~~l~~~~~r~~fi~-~iv~~l~--~~~~DGidiDwE~~~~----~d~~ 120 (313)
T cd02874 48 ERLIEAAKRRGVKPLLVITNLTNGNFDSELAHAVLSNPEARQRLIN-NILALAK--KYGYDGVNIDFENVPP----EDRE 120 (313)
T ss_pred HHHHHHHHHCCCeEEEEEecCCCCCCCHHHHHHHhcCHHHHHHHHH-HHHHHHH--HhCCCcEEEecccCCH----HHHH
Confidence 5788888888999999997532 2344555433233333 3333321 1134566665565432 2245
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 045344 291 DTFPALKNVQQALVEAGH 308 (627)
Q Consensus 291 ~Llpam~nI~~aL~~agl 308 (627)
.++..|+.+|++|.+.++
T Consensus 121 ~~~~fl~~lr~~l~~~~~ 138 (313)
T cd02874 121 AYTQFLRELSDRLHPAGY 138 (313)
T ss_pred HHHHHHHHHHHHhhhcCc
Confidence 688999999999987764
No 34
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=68.38 E-value=98 Score=34.61 Aligned_cols=97 Identities=15% Similarity=0.211 Sum_probs=48.1
Q ss_pred HHHHHHHhcCCEEEEeeCCChh----------------hhhhhc-hHHHHHHHHHhhcccccCCCceEEEEEeccccccc
Q 045344 220 TSVKELAHTGIEVMVAIPNGML----------------FDMAVD-YSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLK 282 (627)
Q Consensus 220 ~VL~Ala~tgIkV~VGV~n~~l----------------~~la~s-~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~ 282 (627)
-+|++++..|++.+++..+.-. ..|..+ .+.=...|.+.| .++..-+..|++|.-=||+-..
T Consensus 108 wfL~~Ak~rGV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NLk~d~y~~FA~YLa~Vv-~~~~~~GI~f~~IsP~NEP~~~ 186 (384)
T PF14587_consen 108 WFLKAAKERGVNIFEAFSNSPPWWMTKNGSASGGDDGSDNLKPDNYDAFADYLADVV-KHYKKWGINFDYISPFNEPQWN 186 (384)
T ss_dssp HHHHHHHHTT---EEEE-SSS-GGGSSSSSSB-S-SSS-SS-TT-HHHHHHHHHHHH-HHHHCTT--EEEEE--S-TTS-
T ss_pred HHHHHHHHcCCCeEEEeecCCCHHHhcCCCCCCCCccccccChhHHHHHHHHHHHHH-HHHHhcCCccceeCCcCCCCCC
Confidence 4678888888888887754210 011111 111112333322 2333335799999999999876
Q ss_pred CCCc------cchhhHHHHHHHHHHHHHHcCCCcceEEecccc
Q 045344 283 SYND------SFVKDTFPALKNVQQALVEAGHGKMVKATVPLN 319 (627)
Q Consensus 283 ~~~~------~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s 319 (627)
+... -..++....|+.|+++|+++||.-+ |+.+++
T Consensus 187 W~~~~QEG~~~~~~e~a~vI~~L~~~L~~~GL~t~--I~~~Ea 227 (384)
T PF14587_consen 187 WAGGSQEGCHFTNEEQADVIRALDKALKKRGLSTK--ISACEA 227 (384)
T ss_dssp GG--SS-B----HHHHHHHHHHHHHHHHHHT-S-E--EEEEEE
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHHHHhcCCCce--EEecch
Confidence 5211 1356778899999999999999754 555554
No 35
>smart00481 POLIIIAc DNA polymerase alpha chain like domain. DNA polymerase alpha chain like domain, incl. family of hypothetical proteins
Probab=67.67 E-value=19 Score=29.17 Aligned_cols=43 Identities=21% Similarity=0.324 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhcCCEEEEeeC
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDAD-----ETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYdaD-----~~VL~Ala~tgIkV~VGV~ 237 (627)
-+++++++.++..|++.|=|=|-+ +...+.++..||+|+.|+.
T Consensus 15 ~~~~~~~~~a~~~g~~~v~iTDh~~~~~~~~~~~~~~~~gi~~i~G~E 62 (67)
T smart00481 15 LSPEELVKRAKELGLKAIAITDHGNLFGAVEFYKAAKKAGIKPIIGLE 62 (67)
T ss_pred CCHHHHHHHHHHcCCCEEEEeeCCcccCHHHHHHHHHHcCCeEEEEEE
Confidence 468899999999999999887766 3566777789999999985
No 36
>PRK12677 xylose isomerase; Provisional
Probab=66.22 E-value=1.6e+02 Score=32.69 Aligned_cols=64 Identities=20% Similarity=0.195 Sum_probs=41.6
Q ss_pred cccccccCCCCccceeeeCCCCCC-C--CCHHHHHHHHHhCCCCEEEEecC-------C--------hHHHHHHHhcCCE
Q 045344 170 VDNFDYAHIKPVDVGVNWGNLASH-P--LPAKIIVQMLKDNGIKRAKLFDA-------D--------ETSVKELAHTGIE 231 (627)
Q Consensus 170 ~~~~~~~~~~~~~iGVnYG~~~~n-l--psp~~Vv~lLks~~i~~VRlYda-------D--------~~VL~Ala~tgIk 231 (627)
.++|++-.=..+..|. .|+|.- . .++.++++.++..|+..|-+.+- + ..+.++++.+||+
T Consensus 5 ~~~f~~~~w~~~~~~~--~~~g~~~~~~~~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~~~GL~ 82 (384)
T PRK12677 5 EDKFSFGLWTVGWQGR--DPFGDATRPPLDPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALDETGLV 82 (384)
T ss_pred cceeEEEEeeccCCCC--CCCCCCCCCCCCHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHHHcCCe
Confidence 4455554433333333 556543 2 36889999999999999988742 1 1455677899999
Q ss_pred EEEe
Q 045344 232 VMVA 235 (627)
Q Consensus 232 V~VG 235 (627)
|..-
T Consensus 83 v~~v 86 (384)
T PRK12677 83 VPMV 86 (384)
T ss_pred eEEE
Confidence 7743
No 37
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.86 E-value=17 Score=40.16 Aligned_cols=57 Identities=14% Similarity=0.391 Sum_probs=39.9
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCC------CCCHHHHHHHHHHHHHHHHhc
Q 045344 392 YTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHK------AATSQSAQKFYDGLFKKLAKR 451 (627)
Q Consensus 392 YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~------~AS~~NA~~y~~nli~~~~s~ 451 (627)
|-+-|++-+-.........|++.++|+.| |||.|.. ..|...++..+..+++.+...
T Consensus 125 fNntf~dav~R~aqI~~d~g~~~~pVvFS---WPS~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~ 187 (377)
T COG4782 125 FNNTFEDAVYRTAQIVHDSGNDGVPVVFS---WPSRGSLLGYNYDRESTNYSRPALERLLRYLATD 187 (377)
T ss_pred cCCchhHHHHHHHHHHhhcCCCcceEEEE---cCCCCeeeecccchhhhhhhHHHHHHHHHHHHhC
Confidence 44555554444434444568888999997 9999984 267777788888888877754
No 38
>PF00925 GTP_cyclohydro2: GTP cyclohydrolase II; InterPro: IPR000926 GTP cyclohydrolase II catalyses the first committed step in the biosynthesis of riboflavin. The enzyme converts GTP and water to formate, 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)- pyrimidine and pyrophosphate, and requires magnesium as a cofactor. It is sometimes found as a bifunctional enzyme with 3,4-dihydroxy-2-butanone 4-phosphate synthase (DHBP_synthase) IPR000422 from INTERPRO. ; GO: 0003935 GTP cyclohydrolase II activity, 0009231 riboflavin biosynthetic process; PDB: 2BZ0_B 2BZ1_A.
Probab=65.45 E-value=9.2 Score=37.47 Aligned_cols=38 Identities=29% Similarity=0.509 Sum_probs=27.8
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
-+|+|+.+|+++|||....|.-+.+|.+.||+|.=-||
T Consensus 131 gaqIL~dLGV~~~rLLtnnp~k~~~L~g~gleV~~~vp 168 (169)
T PF00925_consen 131 GAQILRDLGVKKMRLLTNNPRKYVALEGFGLEVVERVP 168 (169)
T ss_dssp HHHHHHHTT--SEEEE-S-HHHHHHHHHTT--EEEEE-
T ss_pred HHHHHHHcCCCEEEECCCChhHHHHHhcCCCEEEEEec
Confidence 36899999999999999999999999999999976554
No 39
>PF04909 Amidohydro_2: Amidohydrolase; InterPro: IPR006992 These proteins are related to the metal-dependent hydrolase superfamily []. The family includes 2-amino-3-carboxymuconate-6-semialdehyde decarboxylase which converts alpha-amino-beta-carboxymuconate-epsilon- semialdehyde (ACMS) to alpha-aminomuconate semialdehyde (AMS). ACMS can be converted non-enzymatically to quinolate, a potent endogenous excitoxin of neuronal cells which is implicated in the pathogenesis of various neurodegenerative disorders. In the presence of AMCSD, ACMS is converted to AMS, a benign catabolite. 2-amino-3-(3-oxoprop-2-enyl)-but-2-enedioate = 2-aminomuconate semialdehyde + CO2. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2QPX_A 4D8L_A 3K4W_I 3IRS_B 4DZI_B 3S4T_G 2GWG_B 3IJ6_A 2DVX_C 2DVT_C ....
Probab=65.23 E-value=21 Score=35.72 Aligned_cols=104 Identities=21% Similarity=0.321 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccC-cccccCCCCCC
Q 045344 293 FPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIY-PFLSLYESPDF 371 (627)
Q Consensus 293 lpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiY-Pff~~~~~~~i 371 (627)
-.+++.+.+.+.+.|+.+ ||+.+...... |.. .....++++.+.+.+-|+.+++- +.+...
T Consensus 84 ~~~~~~l~~~~~~~g~~G-v~l~~~~~~~~-----~~~-------~~~~~~~~~~~~~~~~pv~~H~g~~~~~~~----- 145 (273)
T PF04909_consen 84 EDAVEELERALQELGFRG-VKLHPDLGGFD-----PDD-------PRLDDPIFEAAEELGLPVLIHTGMTGFPDA----- 145 (273)
T ss_dssp HHHHHHHHHHHHTTTESE-EEEESSETTCC-----TTS-------GHCHHHHHHHHHHHT-EEEEEESHTHHHHH-----
T ss_pred hhHHHHHHHhccccceee-eEecCCCCccc-----ccc-------HHHHHHHHHHHHhhccceeeeccccchhhh-----
Confidence 467888888888888865 88765432111 111 11124788888888888888753 111100
Q ss_pred CccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 045344 372 PVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAK 450 (627)
Q Consensus 372 ~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s 450 (627)
..-..+...+...+++ +|+++||+.+.|+| ..++..+++.+..
T Consensus 146 ----------------------~~~~~~~~~~~~~~~~--~P~l~ii~~H~G~~------------~~~~~~~~~l~~~ 188 (273)
T PF04909_consen 146 ----------------------PSDPADPEELEELLER--FPDLRIILAHLGGP------------FPWWEEALRLLDR 188 (273)
T ss_dssp ----------------------HHHHHHHHHHTTHHHH--STTSEEEESGGGTT------------HHHHHHHHHHHHH
T ss_pred ----------------------hHHHHHHHHHHHHHHH--hcCCeEEEecCccc------------chhHHHHHHHHHh
Confidence 0001122223333344 79999999999999 4555566665543
No 40
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=64.18 E-value=1e+02 Score=30.14 Aligned_cols=80 Identities=9% Similarity=-0.053 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCEEEEeeCCCh--hh--hhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHH
Q 045344 220 TSVKELAHTGIEVMVAIPNGM--LF--DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPA 295 (627)
Q Consensus 220 ~VL~Ala~tgIkV~VGV~n~~--l~--~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpa 295 (627)
.+|+++...||+|+||++.+. -. ..+.....+. -|.+-|..-|.. ...+.+--+--|+-.. ....+++
T Consensus 69 ~~L~~A~~~Gmkv~~Gl~~~~~~w~~~~~~~~~~~~~-~v~~el~~~yg~-h~sf~GWYip~E~~~~------~~~~~~~ 140 (166)
T PF14488_consen 69 MILDAADKYGMKVFVGLYFDPDYWDQGDLDWEAERNK-QVADELWQRYGH-HPSFYGWYIPYEIDDY------NWNAPER 140 (166)
T ss_pred HHHHHHHHcCCEEEEeCCCCchhhhccCHHHHHHHHH-HHHHHHHHHHcC-CCCCceEEEecccCCc------ccchHHH
Confidence 578888999999999998531 11 1111111111 122223221211 2256666667776432 1234666
Q ss_pred HHHHHHHHHHcC
Q 045344 296 LKNVQQALVEAG 307 (627)
Q Consensus 296 m~nI~~aL~~ag 307 (627)
.+.+.+.|++..
T Consensus 141 ~~~l~~~lk~~s 152 (166)
T PF14488_consen 141 FALLGKYLKQIS 152 (166)
T ss_pred HHHHHHHHHHhC
Confidence 777777776653
No 41
>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=62.93 E-value=61 Score=36.35 Aligned_cols=36 Identities=19% Similarity=0.427 Sum_probs=23.1
Q ss_pred CCHHHHHHHHH---hCCCCEEEEec-------CC-------hHHHHHHHhcCC
Q 045344 195 LPAKIIVQMLK---DNGIKRAKLFD-------AD-------ETSVKELAHTGI 230 (627)
Q Consensus 195 psp~~Vv~lLk---s~~i~~VRlYd-------aD-------~~VL~Ala~tgI 230 (627)
-++++|++.++ ..|++.|.+.+ .+ .++|+++...++
T Consensus 167 r~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i 219 (440)
T PRK14334 167 RHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGI 219 (440)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCC
Confidence 45788876543 46888887743 22 256777776665
No 42
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=61.86 E-value=89 Score=33.13 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=44.1
Q ss_pred HHHHHh--cCCEEEEeeCC----ChhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHH
Q 045344 222 VKELAH--TGIEVMVAIPN----GMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPA 295 (627)
Q Consensus 222 L~Ala~--tgIkV~VGV~n----~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpa 295 (627)
|.+++. .+++|++.|.. +....++.+.+..+++++. |..++. .-.+.+|-+==|..... +.....++..
T Consensus 57 ~~~l~~~~~~~kvl~svgg~~~s~~f~~~~~~~~~r~~fi~~-i~~~~~--~~~~DGidiDwE~~~~~--~~d~~~~~~l 131 (334)
T smart00636 57 LKALKKKNPGLKVLLSIGGWTESDNFSSMLSDPASRKKFIDS-IVSFLK--KYGFDGIDIDWEYPGAR--GDDRENYTAL 131 (334)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCcchhHHHCCHHHHHHHHHH-HHHHHH--HcCCCeEEECCcCCCCC--ccHHHHHHHH
Confidence 556665 48999999875 2234455554333333332 222221 12355666654543220 0224467888
Q ss_pred HHHHHHHHHHc
Q 045344 296 LKNVQQALVEA 306 (627)
Q Consensus 296 m~nI~~aL~~a 306 (627)
|+.+|++|.+.
T Consensus 132 l~~lr~~l~~~ 142 (334)
T smart00636 132 LKELREALDKE 142 (334)
T ss_pred HHHHHHHHHHh
Confidence 99999999865
No 43
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=61.35 E-value=74 Score=33.85 Aligned_cols=87 Identities=13% Similarity=0.060 Sum_probs=43.9
Q ss_pred hHHHHHHHh--cCCEEE--Eee--CCC-hhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEec-ccccccCCCccchh
Q 045344 219 ETSVKELAH--TGIEVM--VAI--PNG-MLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVG-NEPFLKSYNDSFVK 290 (627)
Q Consensus 219 ~~VL~Ala~--tgIkV~--VGV--~n~-~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VG-NEvL~~~~~~~~~~ 290 (627)
...|.+++. .++||+ |.+ |.. ....++++++.-+++++..| .++. .-.+.+|-+= =|............
T Consensus 54 ~~~~~~lk~~~~~lkvlp~i~~gg~~~~~f~~~~~~~~~R~~fi~s~~-~~~~--~~~~DGidiD~we~p~~~~~~~d~~ 130 (318)
T cd02876 54 KGWIEEVRKANKNIKILPRVLFEGWSYQDLQSLLNDEQEREKLIKLLV-TTAK--KNHFDGIVLEVWSQLAAYGVPDKRK 130 (318)
T ss_pred hHHHHHHHhhCCCcEEEeEEEECCCCHHHHHHHHcCHHHHHHHHHHHH-HHHH--HcCCCcEEEechhhhcccCCHHHHH
Confidence 344556654 579998 533 332 24556666654444544332 2221 1123444332 11111000011245
Q ss_pred hHHHHHHHHHHHHHHcCC
Q 045344 291 DTFPALKNVQQALVEAGH 308 (627)
Q Consensus 291 ~Llpam~nI~~aL~~agl 308 (627)
.++..|+.++++|.+.++
T Consensus 131 ~~~~~l~el~~~l~~~~~ 148 (318)
T cd02876 131 ELIQLVIHLGETLHSANL 148 (318)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 678899999999988765
No 44
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=60.25 E-value=1.8e+02 Score=32.30 Aligned_cols=63 Identities=24% Similarity=0.256 Sum_probs=40.2
Q ss_pred cccccccCCCCccceeeeCCCCCC---CCCHHHHHHHHHhCCCCEEEEecCC-------h--------HHHHHHHhcCCE
Q 045344 170 VDNFDYAHIKPVDVGVNWGNLASH---PLPAKIIVQMLKDNGIKRAKLFDAD-------E--------TSVKELAHTGIE 231 (627)
Q Consensus 170 ~~~~~~~~~~~~~iGVnYG~~~~n---lpsp~~Vv~lLks~~i~~VRlYdaD-------~--------~VL~Ala~tgIk 231 (627)
.++|++-.=..+..|. .++|+- ..++.+.++.|+..|+..|-+++.+ . .+-++++.+||+
T Consensus 6 ~~~f~~~~w~~~~~~~--~~~g~~~~~~~~~~e~i~~la~~GfdgVE~~~~dl~P~~~~~~e~~~~~~~lk~~L~~~GL~ 83 (382)
T TIGR02631 6 EDRFTFGLWTVGWVGR--DPFGDATRTALDPVEAVHKLAELGAYGVTFHDDDLIPFGAPPQERDQIVRRFKKALDETGLK 83 (382)
T ss_pred CCceEEEeeccCCCCC--CCCCCCCCCCcCHHHHHHHHHHhCCCEEEecccccCCCCCChhHHHHHHHHHHHHHHHhCCe
Confidence 3455554333333333 455543 2357788889999999999988532 1 345678899999
Q ss_pred EEE
Q 045344 232 VMV 234 (627)
Q Consensus 232 V~V 234 (627)
|..
T Consensus 84 v~~ 86 (382)
T TIGR02631 84 VPM 86 (382)
T ss_pred EEE
Confidence 754
No 45
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=59.51 E-value=76 Score=35.10 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=18.6
Q ss_pred hHHHHHHHHHhhhcCCCceeccCccccc
Q 045344 338 KQHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 338 ~~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
.+.+...++|+.+.+ +-.+++|||--+
T Consensus 304 ~ed~~~tl~~i~~~~-~~~~~~~~~sp~ 330 (414)
T TIGR01579 304 EEDFQETLRMVKEIE-FSHLHIFPYSAR 330 (414)
T ss_pred HHHHHHHHHHHHhCC-CCEEEeeecCCC
Confidence 356788899998765 456777776543
No 46
>PLN02389 biotin synthase
Probab=58.50 E-value=1.3e+02 Score=33.39 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=28.0
Q ss_pred CCCHHHHHHHHH---hCCCCEEEE-------ecCC------hHHHHHHHhcCCEEEEeeC
Q 045344 194 PLPAKIIVQMLK---DNGIKRAKL-------FDAD------ETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 194 lpsp~~Vv~lLk---s~~i~~VRl-------YdaD------~~VL~Ala~tgIkV~VGV~ 237 (627)
+.++++|++.++ ..|+++|-| .+.+ .++++.++..+|+|.+...
T Consensus 115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~~e~i~eiir~ik~~~l~i~~s~G 174 (379)
T PLN02389 115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTNFNQILEYVKEIRGMGMEVCCTLG 174 (379)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCChhHHHHHHHHHHHHhcCCcEEEECCC
Confidence 457899887654 468887754 2211 2567777778888765443
No 47
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=57.20 E-value=2.3e+02 Score=32.23 Aligned_cols=117 Identities=15% Similarity=0.201 Sum_probs=63.2
Q ss_pred HHHHHHHh--cCCEEEEee--CCC--hhhhhhhchHHHHHHHHHhh---cccccCCCceEEEEE---ecccccccCCCcc
Q 045344 220 TSVKELAH--TGIEVMVAI--PNG--MLFDMAVDYSNAQNWVKENV---TRWVKDGSVKLKYVA---VGNEPFLKSYNDS 287 (627)
Q Consensus 220 ~VL~Ala~--tgIkV~VGV--~n~--~l~~la~s~~~A~~Wv~~nV---~~y~p~~~t~I~~I~---VGNEvL~~~~~~~ 287 (627)
..|..++. +.+|+++.| |.+ .-..++++.+.-+..+++.| +.| +-..+.|..=- .|.+...+ ...
T Consensus 115 ~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~-~FDGVDIDWEYP~~~~~~~~~~--~~~ 191 (441)
T COG3325 115 GALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTY-GFDGVDIDWEYPGSGGDAGNCG--RPK 191 (441)
T ss_pred HHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhc-CCCceeeccccCCCCCCCCCCC--Ccc
Confidence 34555653 445666666 532 23445566554455555554 222 11122333221 23333211 123
Q ss_pred chhhHHHHHHHHHHHHHHcCCCc--ceEEecccccccccccCCCCccccchh-hHHHHHHHHHh
Q 045344 288 FVKDTFPALKNVQQALVEAGHGK--MVKATVPLNADVYEGTLPSDGVFRKDI-KQHIDNILKNL 348 (627)
Q Consensus 288 ~~~~Llpam~nI~~aL~~agl~~--~IkVsT~~s~~vl~~~pPS~g~F~~d~-~~~l~~lldFL 348 (627)
..+..+..|+.||++|-+++..+ +..+|++...+- ..++ .+ ...|.+.|||+
T Consensus 192 d~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~--------~~l~-~~~~~~~~~~vDyi 246 (441)
T COG3325 192 DKANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASK--------DKLE-GLNHAEIAQYVDYI 246 (441)
T ss_pred cHHHHHHHHHHHHHHHhhcccccCceEEEEEecCCch--------hhhh-cccHHHHHHHHhhh
Confidence 46778899999999999999765 677777643221 1122 22 25678888987
No 48
>TIGR00505 ribA GTP cyclohydrolase II. Several members of the family are bifunctional, involving both ribA and ribB function. In these cases, ribA tends to be on the C-terminal end of the protein and ribB tends to be on the N-terminal. The function of archaeal members of the family has not been demonstrated and is assigned tentatively.
Probab=53.72 E-value=20 Score=35.84 Aligned_cols=33 Identities=24% Similarity=0.596 Sum_probs=30.4
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEE
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVM 233 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~ 233 (627)
+|+|+.+|+++|||....+.-+.+|.+.||+|.
T Consensus 131 AQIL~dLGV~~~rLLtn~~~k~~~L~g~gleVv 163 (191)
T TIGR00505 131 ADILEDLGVKKVRLLTNNPKKIEILKKAGINIV 163 (191)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEE
Confidence 689999999999999998888889999999987
No 49
>PRK00393 ribA GTP cyclohydrolase II; Reviewed
Probab=53.29 E-value=20 Score=36.00 Aligned_cols=36 Identities=28% Similarity=0.577 Sum_probs=31.7
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEee
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAI 236 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV 236 (627)
+|+|+.+|+++|||....+.-+.+|.+.||+|.=-+
T Consensus 134 AQIL~dLGV~~mrLLtn~~~k~~~L~g~GleV~~~~ 169 (197)
T PRK00393 134 ADMLKALGVKKVRLLTNNPKKVEALTEAGINIVERV 169 (197)
T ss_pred HHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999998888889999999997333
No 50
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=52.42 E-value=2.7e+02 Score=30.09 Aligned_cols=112 Identities=14% Similarity=0.126 Sum_probs=67.5
Q ss_pred HHHHHHHHhCCCCEEEEecC-----------C-------hHHHHHHHhcCCEEEEeeCCC--------hhhhh-------
Q 045344 198 KIIVQMLKDNGIKRAKLFDA-----------D-------ETSVKELAHTGIEVMVAIPNG--------MLFDM------- 244 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYda-----------D-------~~VL~Ala~tgIkV~VGV~n~--------~l~~l------- 244 (627)
.++++.||+.|+..|-+|-. | ...|+.+++.||.|+|=.... .++..
T Consensus 27 ~~~l~k~ka~G~n~v~~yv~W~~he~~~g~~df~g~~dl~~f~~~a~~~gl~vilrpGpyi~aE~~~gG~P~Wl~~~~~~ 106 (319)
T PF01301_consen 27 RDRLQKMKAAGLNTVSTYVPWNLHEPEEGQFDFTGNRDLDRFLDLAQENGLYVILRPGPYICAEWDNGGLPAWLLRKPDI 106 (319)
T ss_dssp HHHHHHHHHTT-SEEEEE--HHHHSSBTTB---SGGG-HHHHHHHHHHTT-EEEEEEES---TTBGGGG--GGGGGSTTS
T ss_pred HHHHHHHHhCCcceEEEeccccccCCCCCcccccchhhHHHHHHHHHHcCcEEEecccceecccccchhhhhhhhccccc
Confidence 46777888999999999942 1 256788899999999865421 01110
Q ss_pred ---hhc---hHHHHHHHHHh---hcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEe
Q 045344 245 ---AVD---YSNAQNWVKEN---VTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKAT 315 (627)
Q Consensus 245 ---a~s---~~~A~~Wv~~n---V~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVs 315 (627)
..+ .++.++|+++. |+++.-..+..|..|=|=||.-. ...-..+|+.+++++++.+....+..+
T Consensus 107 ~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~GGpII~vQvENEyg~-------~~~~~~Y~~~l~~~~~~~g~~~~~~~t 179 (319)
T PF01301_consen 107 RLRTNDPPFLEAVERWYRALAKIIKPLQYTNGGPIIMVQVENEYGS-------YGTDRAYMEALKDAYRDWGIDPVLLYT 179 (319)
T ss_dssp -SSSS-HHHHHHHHHHHHHHHHHHGGGBGGGTSSEEEEEESSSGGC-------TSS-HHHHHHHHHHHHHTT-SSSBEEE
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhhhhcCCCceehhhhhhhhCC-------CcccHhHHHHHHHHHHHhhCccceeec
Confidence 011 24566777653 45543222346889999999652 123467888999999999876434444
Q ss_pred c
Q 045344 316 V 316 (627)
Q Consensus 316 T 316 (627)
+
T Consensus 180 ~ 180 (319)
T PF01301_consen 180 T 180 (319)
T ss_dssp E
T ss_pred c
Confidence 4
No 51
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=52.34 E-value=1.7e+02 Score=28.33 Aligned_cols=42 Identities=12% Similarity=0.305 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHHhC--CCCEEEEecCCh-------HHHHHHHhcCCEEEEe
Q 045344 194 PLPAKIIVQMLKDN--GIKRAKLFDADE-------TSVKELAHTGIEVMVA 235 (627)
Q Consensus 194 lpsp~~Vv~lLks~--~i~~VRlYdaD~-------~VL~Ala~tgIkV~VG 235 (627)
..++++++++|+.. .++.|.+.+-+| .+++.+++.|+++.+-
T Consensus 46 ~~~~~~i~~~i~~~~~~~~~i~~sGGEPll~~~l~~li~~~~~~g~~v~i~ 96 (191)
T TIGR02495 46 EIEVEFLLEFLRSRQGLIDGVVITGGEPTLQAGLPDFLRKVRELGFEVKLD 96 (191)
T ss_pred cCCHHHHHHHHHHhcCCCCeEEEECCcccCcHhHHHHHHHHHHCCCeEEEE
Confidence 45788999888653 368899988654 4567777888876553
No 52
>cd01543 PBP1_XylR Ligand-binding domain of DNA transcription repressor specific for xylose (XylR). Ligand-binding domain of DNA transcription repressor specific for xylose (XylR), a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of XylR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=51.96 E-value=1.4e+02 Score=29.71 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=21.2
Q ss_pred HHHHHHHHhCCCCEEEEecCCh---------HHHHHHHhcCCEE
Q 045344 198 KIIVQMLKDNGIKRAKLFDADE---------TSVKELAHTGIEV 232 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD~---------~VL~Ala~tgIkV 232 (627)
..+++.|...|.++|=+..... ...++++..|+++
T Consensus 98 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~R~~gf~~~~~~~~~~~ 141 (265)
T cd01543 98 RMAAEHFLERGFRHFAFYGLPGARWSDEREEAFRQLVAEAGYEC 141 (265)
T ss_pred HHHHHHHHHCCCcEEEEEcCCCCHHHHHHHHHHHHHHHHcCCcc
Confidence 4456666667777777664321 2345667778776
No 53
>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.91 E-value=2.7e+02 Score=32.27 Aligned_cols=138 Identities=13% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCHHHHHHH---HHhCCCCEEEEecCC---------------hHHHHHHHhcCCE-EEEeeCCChhhhhhhchHHHHHHH
Q 045344 195 LPAKIIVQM---LKDNGIKRAKLFDAD---------------ETSVKELAHTGIE-VMVAIPNGMLFDMAVDYSNAQNWV 255 (627)
Q Consensus 195 psp~~Vv~l---Lks~~i~~VRlYdaD---------------~~VL~Ala~tgIk-V~VGV~n~~l~~la~s~~~A~~Wv 255 (627)
-++++|++. |...|++.|.|.+.+ ..+|++++..+++ +-++... ...+.. + +
T Consensus 241 r~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~--P~~i~d--e-----l 311 (509)
T PRK14327 241 RRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSH--PRDFDD--H-----L 311 (509)
T ss_pred CCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecC--cccCCH--H-----H
Confidence 456888754 345688999886542 2466777665552 3332211 001111 1 1
Q ss_pred HHhhcccccCCCceEEEEEec----ccccccCC-CccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCC
Q 045344 256 KENVTRWVKDGSVKLKYVAVG----NEPFLKSY-NDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSD 330 (627)
Q Consensus 256 ~~nV~~y~p~~~t~I~~I~VG----NEvL~~~~-~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~ 330 (627)
.+.+... .-.+..|.+| ++.+++.- .....++.+.+++.+|+++ ..|.++|.. +..||-
T Consensus 312 i~~m~~~----g~~~~~l~lgvQSgsd~vLk~M~R~~t~e~~~~~v~~lr~~~------p~i~i~tdi----IvGfPg-- 375 (509)
T PRK14327 312 IEVLAKG----GNLVEHIHLPVQSGSTEVLKIMARKYTRESYLELVRKIKEAI------PNVALTTDI----IVGFPN-- 375 (509)
T ss_pred HHHHHhc----CCccceEEeccCCCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCcEEeeeE----EEeCCC--
Confidence 1112211 1123455554 33333211 1223456666666666542 235555443 322431
Q ss_pred ccccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 331 GVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 331 g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
+-.+.+...++||.+.+ +-.+++|+|-
T Consensus 376 -----ET~edf~~Tl~~v~~l~-~d~~~~f~ys 402 (509)
T PRK14327 376 -----ETDEQFEETLSLYREVG-FDHAYTFIYS 402 (509)
T ss_pred -----CCHHHHHHHHHHHHHcC-CCeEEEeeee
Confidence 22355677888887654 2345666654
No 54
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=51.08 E-value=1.8e+02 Score=30.45 Aligned_cols=78 Identities=18% Similarity=0.182 Sum_probs=40.3
Q ss_pred HhcCCEEEEeeCCC-----hhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHH
Q 045344 226 AHTGIEVMVAIPNG-----MLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQ 300 (627)
Q Consensus 226 a~tgIkV~VGV~n~-----~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~ 300 (627)
+..+++|+|.|.-. ....+..+.+.... +.+.|..++- .-.+.+|-+==|.............+...|+.+|
T Consensus 70 ~~~~~kvllsigg~~~~~~~~~~~~~~~~~r~~-f~~~i~~~l~--~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~ 146 (343)
T PF00704_consen 70 KNPGVKVLLSIGGWGMSSDGFSQLLSNPAKRQN-FINNIVSFLK--KYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELR 146 (343)
T ss_dssp HHTT-EEEEEEEETTSSHHHHHHHHHSHHHHHH-HHHHHHHHHH--HHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHH
T ss_pred hccCceEEEEeccccccccccccccccHHHHHH-HHHhhhhhhc--ccCcceeeeeeeeccccccchhhhhhhhhhhhhh
Confidence 45699999988653 23344433322222 2222222221 1135677665554432100123567888999999
Q ss_pred HHHHHc
Q 045344 301 QALVEA 306 (627)
Q Consensus 301 ~aL~~a 306 (627)
++|++.
T Consensus 147 ~~l~~~ 152 (343)
T PF00704_consen 147 KALKRA 152 (343)
T ss_dssp HHHHHH
T ss_pred hhhccc
Confidence 999885
No 55
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=50.93 E-value=82 Score=34.32 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=48.7
Q ss_pred cceeeeCCCCCCCCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcc
Q 045344 182 DVGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTR 261 (627)
Q Consensus 182 ~iGVnYG~~~~nlpsp~~Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~ 261 (627)
.+||+.-....+ |..++.++++...+.+.|=+..-.|..++.++..||+|+.-|+. +..|..+++..+
T Consensus 57 PfGVnl~~~~~~-~~~~~~l~vi~e~~v~~V~~~~G~P~~~~~lk~~Gi~v~~~v~s---------~~~A~~a~~~Ga-- 124 (320)
T cd04743 57 PWGVGILGFVDT-ELRAAQLAVVRAIKPTFALIAGGRPDQARALEAIGISTYLHVPS---------PGLLKQFLENGA-- 124 (320)
T ss_pred CeEEEEeccCCC-cchHHHHHHHHhcCCcEEEEcCCChHHHHHHHHCCCEEEEEeCC---------HHHHHHHHHcCC--
Confidence 467776433222 33355666666667777766655666678889999999988873 344555544322
Q ss_pred cccCCCceEEEEEecccc
Q 045344 262 WVKDGSVKLKYVAVGNEP 279 (627)
Q Consensus 262 y~p~~~t~I~~I~VGNEv 279 (627)
+. -|+.|.|.
T Consensus 125 ------D~--vVaqG~EA 134 (320)
T cd04743 125 ------RK--FIFEGREC 134 (320)
T ss_pred ------CE--EEEecCcC
Confidence 22 37779996
No 56
>PF13377 Peripla_BP_3: Periplasmic binding protein-like domain; PDB: 3K9C_B 3BIL_B 3JVD_B 1ZAY_A 1VPW_A 1DBQ_A 2PUA_A 1QQA_A 1PNR_A 1JHZ_A ....
Probab=50.75 E-value=1.7e+02 Score=26.58 Aligned_cols=122 Identities=16% Similarity=0.114 Sum_probs=60.8
Q ss_pred HHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCceE
Q 045344 201 VQMLKDNGIKRAKLFDADE----------TSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKL 270 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I 270 (627)
|+.|.++|.++|-+..... ...+|++..|+++.+-+......... .......|+++. .|
T Consensus 1 ~~~L~~~G~r~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~----~p------ 69 (160)
T PF13377_consen 1 VDYLIERGHRRIAFIGGPPNSSVSRERLEGFREALKEHGIEFEELIFFSDDDSED-AREAQLLWLRRL----RP------ 69 (160)
T ss_dssp HHHHHHTT-SSEEEEESSTTSHHHHHHHHHHHHHHHHTTSEEEGEEEEESSSHHH-HHHHHHHHHHTC----SS------
T ss_pred ChHHHHCCCCeEEEEecCCCChhHHHHHHHHHHHHHHCCCCCCeeEeecCCcchh-HHHHHHHHHhcC----CC------
Confidence 3556677889998887431 35578888999865444321111111 111222366433 22
Q ss_pred EEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCC--CcceEEecccccccccccCCCCccccchhhHHHHHHHHHh
Q 045344 271 KYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGH--GKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNL 348 (627)
Q Consensus 271 ~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl--~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL 348 (627)
++|++.++.+. .-+..+|++.|+ .+.|.|-+-.....+....|....+..+...+-..+++.|
T Consensus 70 daii~~~~~~a---------------~~~~~~l~~~g~~vP~di~vv~~~~~~~~~~~~p~it~i~~~~~~~g~~a~~~l 134 (160)
T PF13377_consen 70 DAIICSNDRLA---------------LGVLRALRELGIRVPQDISVVSFDDSPLLEFFSPPITTIDQDPREMGREAVELL 134 (160)
T ss_dssp SEEEESSHHHH---------------HHHHHHHHHTTSCTTTTSEEEEESSSGHHHCSSSTSEEEEE-HHHHHHHHHHHH
T ss_pred cEEEEcCHHHH---------------HHHHHHHHHcCCcccccccEEEecCcHHHHHHcCCCceecCCHHHHHHHHHHHH
Confidence 37888877542 123356666776 3557666554433333323344555555543333334433
No 57
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=50.32 E-value=1.9e+02 Score=32.34 Aligned_cols=58 Identities=3% Similarity=0.078 Sum_probs=31.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLS 364 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~ 364 (627)
......+++.+|+++ ..|.|+|.. +-.|| .|-.+.+...++|+.+.+ +-.+++++|-.
T Consensus 274 ~~~~~~~i~~lr~~~------~~i~i~~d~----IvGfP-------gET~edf~~tl~fi~~~~-~~~~~~~~~sp 331 (434)
T PRK14330 274 REEYLELIEKIRSKV------PDASISSDI----IVGFP-------TETEEDFMETVDLVEKAQ-FERLNLAIYSP 331 (434)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEE----EEECC-------CCCHHHHHHHHHHHHhcC-CCEEeeeeccC
Confidence 445555555555431 225566553 22233 122356788899998765 33456666543
No 58
>PRK09989 hypothetical protein; Provisional
Probab=50.13 E-value=1.7e+02 Score=29.95 Aligned_cols=52 Identities=12% Similarity=0.167 Sum_probs=39.4
Q ss_pred cceeeeCCCCCCCCCHHHHHHHHHhCCCCEEEEe---cCC-hHHHHHHHhcCCEEEE
Q 045344 182 DVGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLF---DAD-ETSVKELAHTGIEVMV 234 (627)
Q Consensus 182 ~iGVnYG~~~~nlpsp~~Vv~lLks~~i~~VRlY---daD-~~VL~Ala~tgIkV~V 234 (627)
.+.+|...+-..+ +-.+.++.+++.||+.|-|. +.+ ..+.+.++.+||+|..
T Consensus 3 ~~~~~~~~~~~~~-~l~~~l~~~~~~Gfd~VEl~~~~~~~~~~~~~~l~~~Gl~v~~ 58 (258)
T PRK09989 3 RFAANLSMMFTEV-PFIERFAAARKAGFDAVEFLFPYDYSTLQIQKQLEQNHLTLAL 58 (258)
T ss_pred ceeeehhhhhcCC-CHHHHHHHHHHcCCCEEEECCcccCCHHHHHHHHHHcCCcEEE
Confidence 3567777766555 46788999999999999983 334 3567788899999876
No 59
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=49.69 E-value=1.2e+02 Score=32.35 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=44.6
Q ss_pred HHHHH--hcCCEEEEeeCC--C--hhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCC------Cccch
Q 045344 222 VKELA--HTGIEVMVAIPN--G--MLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSY------NDSFV 289 (627)
Q Consensus 222 L~Ala--~tgIkV~VGV~n--~--~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~------~~~~~ 289 (627)
|.+++ ..++||+|.|.- + ....++++.+..++.++. |..++. .-.+.+|-+==|-..... .....
T Consensus 75 ~~~lk~~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~s-iv~~l~--~~~fDGidiDwE~p~~~~~~~~~~~~~d~ 151 (322)
T cd06548 75 LRKLKQKNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADS-AVDFIR--KYGFDGIDIDWEYPGSGGAPGNVARPEDK 151 (322)
T ss_pred HHHHHHhCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHH-HHHHHH--hcCCCeEEECCcCCCCCCCCCCCCChhHH
Confidence 34444 367899988863 1 234455555443444333 333321 124556666444221100 01235
Q ss_pred hhHHHHHHHHHHHHHHcC
Q 045344 290 KDTFPALKNVQQALVEAG 307 (627)
Q Consensus 290 ~~Llpam~nI~~aL~~ag 307 (627)
..++..|+.||++|.+++
T Consensus 152 ~~~~~ll~~Lr~~l~~~~ 169 (322)
T cd06548 152 ENFTLLLKELREALDALG 169 (322)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 678899999999998864
No 60
>PRK10076 pyruvate formate lyase II activase; Provisional
Probab=49.25 E-value=3e+02 Score=27.98 Aligned_cols=139 Identities=12% Similarity=0.142 Sum_probs=69.3
Q ss_pred CCHHHHHHHHHhC------CCCEEEEecCCh--------HHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhc
Q 045344 195 LPAKIIVQMLKDN------GIKRAKLFDADE--------TSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVT 260 (627)
Q Consensus 195 psp~~Vv~lLks~------~i~~VRlYdaD~--------~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~ 260 (627)
.++++|++.++.. +-.-|-+-+-+| +++++++..||.+.|--. -..+ ..+. ..+.
T Consensus 19 ~t~eel~~~~~~~~~f~~~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTn-G~~~------~~~~----~~l~ 87 (213)
T PRK10076 19 ITLDALEREVMKDDIFFRTSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETA-GDAP------ASKL----LPLA 87 (213)
T ss_pred cCHHHHHHHHHhhhHhhcCCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECC-CCCC------HHHH----HHHH
Confidence 5789999876542 223566655553 567778888887766322 1110 0111 1122
Q ss_pred ccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHH
Q 045344 261 RWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQH 340 (627)
Q Consensus 261 ~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~ 340 (627)
++.- ...|..-.. .+..++...+. .+-+.+++++.. .+.|. .|.|.|+.--. |.++ .+.
T Consensus 88 ~~~D--~~l~DiK~~-d~~~~~~~tG~---~~~~il~nl~~l-~~~g~--~v~iR~~vIPg-----------~nd~-~e~ 146 (213)
T PRK10076 88 KLCD--EVLFDLKIM-DATQARDVVKM---NLPRVLENLRLL-VSEGV--NVIPRLPLIPG-----------FTLS-REN 146 (213)
T ss_pred HhcC--EEEEeeccC-CHHHHHHHHCC---CHHHHHHHHHHH-HhCCC--cEEEEEEEECC-----------CCCC-HHH
Confidence 2210 111221111 23333322121 123455666543 45554 47777774211 1111 246
Q ss_pred HHHHHHHhhhcCCCceeccCcccccC
Q 045344 341 IDNILKNLHDNKSPFIVNIYPFLSLY 366 (627)
Q Consensus 341 l~~lldFL~~t~sp~~vNiYPff~~~ 366 (627)
|..+++||++-+ +--+++.||+.+.
T Consensus 147 i~~ia~~l~~l~-~~~~~llpyh~~g 171 (213)
T PRK10076 147 MQQALDVLIPLG-IKQIHLLPFHQYG 171 (213)
T ss_pred HHHHHHHHHHcC-CceEEEecCCccc
Confidence 788889997653 4467888988754
No 61
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=48.96 E-value=68 Score=32.88 Aligned_cols=41 Identities=22% Similarity=0.576 Sum_probs=27.4
Q ss_pred HHHhCCCCceEEEceeccCCCCCCC------CCHHHHHHHHHHHHHHHHh
Q 045344 407 LKKAGYPDMKIIIGEIGWPTDGHKA------ATSQSAQKFYDGLFKKLAK 450 (627)
Q Consensus 407 m~k~g~~~~~VvItETGWPS~G~~~------AS~~NA~~y~~nli~~~~s 450 (627)
...++++.++|+. .|||.|... .+..-++..+..|++.+..
T Consensus 42 ~~~~~~~~~~i~F---sWPS~g~~~~Y~~d~~~a~~s~~~l~~~L~~L~~ 88 (233)
T PF05990_consen 42 AHDLGFPGVVILF---SWPSDGSLLGYFYDRESARFSGPALARFLRDLAR 88 (233)
T ss_pred HHHhCCCceEEEE---EcCCCCChhhhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 3456788877766 599999851 4455566666777777654
No 62
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=47.67 E-value=1.6e+02 Score=29.70 Aligned_cols=101 Identities=13% Similarity=0.301 Sum_probs=59.1
Q ss_pred CHHHHHHHHHhCCCCEEEEe-cC-C--hHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCceEE
Q 045344 196 PAKIIVQMLKDNGIKRAKLF-DA-D--ETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLK 271 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlY-da-D--~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~ 271 (627)
.|.+.++.++..|.+.|=+- .+ . ..+|+.+++.|+++-|.+..+. .+ +.+.+|++. -+.|.
T Consensus 68 ~P~~~i~~~~~~g~~~i~~H~E~~~~~~~~i~~ik~~g~k~GialnP~T--~~------------~~~~~~l~~-vD~Vl 132 (201)
T PF00834_consen 68 NPERYIEEFAEAGADYITFHAEATEDPKETIKYIKEAGIKAGIALNPET--PV------------EELEPYLDQ-VDMVL 132 (201)
T ss_dssp SGGGHHHHHHHHT-SEEEEEGGGTTTHHHHHHHHHHTTSEEEEEE-TTS---G------------GGGTTTGCC-SSEEE
T ss_pred cHHHHHHHHHhcCCCEEEEcccchhCHHHHHHHHHHhCCCEEEEEECCC--Cc------------hHHHHHhhh-cCEEE
Confidence 36777777777777755432 11 1 2688999999999988886431 11 123445431 23333
Q ss_pred EEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEe
Q 045344 272 YVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKAT 315 (627)
Q Consensus 272 ~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVs 315 (627)
..+| |+=. .++.+.+.++..|+.+|+.+.+.+++-.|.|-
T Consensus 133 vMsV--~PG~--~Gq~f~~~~~~KI~~l~~~~~~~~~~~~I~vD 172 (201)
T PF00834_consen 133 VMSV--EPGF--GGQKFIPEVLEKIRELRKLIPENGLDFEIEVD 172 (201)
T ss_dssp EESS---TTT--SSB--HGGHHHHHHHHHHHHHHHTCGSEEEEE
T ss_pred EEEe--cCCC--CcccccHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 3333 4311 23456788999999999999998876555544
No 63
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=47.12 E-value=3e+02 Score=29.20 Aligned_cols=74 Identities=9% Similarity=0.134 Sum_probs=41.9
Q ss_pred hcCCEEEEeeCC-----ChhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHH
Q 045344 227 HTGIEVMVAIPN-----GMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQ 301 (627)
Q Consensus 227 ~tgIkV~VGV~n-----~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~ 301 (627)
..++||+|.|.- +....++++++..++++++.| .++. .-.+.+|-+==|-... ......++..|+.+|+
T Consensus 64 ~~~lkvlisiGG~~~~s~~fs~~~~~~~~R~~fi~siv-~~l~--~~~fDGidiDWE~P~~---~~d~~n~~~ll~elr~ 137 (299)
T cd02879 64 NPSVKTLLSIGGGGSDSSAFAAMASDPTARKAFINSSI-KVAR--KYGFDGLDLDWEFPSS---QVEMENFGKLLEEWRA 137 (299)
T ss_pred CCCCeEEEEEeCCCCCCchhhHHhCCHHHHHHHHHHHH-HHHH--HhCCCceeecccCCCC---hhHHHHHHHHHHHHHH
Confidence 567999999852 234556666554445544432 2321 1234555554443211 1224567888999999
Q ss_pred HHHHc
Q 045344 302 ALVEA 306 (627)
Q Consensus 302 aL~~a 306 (627)
+|.+.
T Consensus 138 ~l~~~ 142 (299)
T cd02879 138 AVKDE 142 (299)
T ss_pred HHHHH
Confidence 99754
No 64
>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.01 E-value=2.4e+02 Score=31.58 Aligned_cols=57 Identities=7% Similarity=0.096 Sum_probs=30.8
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
.+.++.+++.+++++ ..|.|+|.. +..||- +-.+.+...++||.+.+ +-.+++++|-
T Consensus 281 ~~~~~~~i~~lr~~~------~~i~i~~d~----IvG~Pg-------ET~ed~~~tl~~i~~l~-~~~~~~~~~s 337 (439)
T PRK14328 281 REYYLELVEKIKSNI------PDVAITTDI----IVGFPG-------ETEEDFEETLDLVKEVR-YDSAFTFIYS 337 (439)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEE----EEECCC-------CCHHHHHHHHHHHHhcC-CCcccceEec
Confidence 455666666665542 225555432 322431 22356777889987654 4456777664
No 65
>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=46.77 E-value=2.6e+02 Score=31.21 Aligned_cols=34 Identities=26% Similarity=0.389 Sum_probs=21.4
Q ss_pred ceeeeCCCCCCCCCHHHHHHHH---HhCCCCEEEEecCC
Q 045344 183 VGVNWGNLASHPLPAKIIVQML---KDNGIKRAKLFDAD 218 (627)
Q Consensus 183 iGVnYG~~~~nlpsp~~Vv~lL---ks~~i~~VRlYdaD 218 (627)
+..-+|+.-. -++++|++.+ ...|++.|.+.+.+
T Consensus 146 ip~~rG~~~s--r~~e~I~~Ei~~l~~~G~keI~l~~~~ 182 (420)
T PRK14339 146 VPHTRGKEIS--IPMDLILKEAEKAVNNGAKEIFLLGQN 182 (420)
T ss_pred cccccCCCCC--CCHHHHHHHHHHHHHCCCcEEEEeeec
Confidence 3344565443 3678887543 55789999887644
No 66
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=45.47 E-value=4.3e+02 Score=28.70 Aligned_cols=124 Identities=8% Similarity=0.110 Sum_probs=71.6
Q ss_pred cCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCc------cccc--CCccchhhhh
Q 045344 326 TLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAK------GLQD--KNHRYTNVLD 397 (627)
Q Consensus 326 ~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~------~v~D--~g~~YtNlfD 397 (627)
+|...+.+.++..+.++++++.+++.++.+.+-+...-... ....+.. ....++.. .... +.-.-..+.+
T Consensus 64 ~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Ql~H~G~~~-~~~~~~~-~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~ 141 (343)
T cd04734 64 AFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQLTHLGRRG-DGDGSWL-PPLAPSAVPEPRHRAVPKAMEEEDIEEIIA 141 (343)
T ss_pred CCCccccCCHHHHHHHHHHHHHHHhcCCeEEEeccCCCcCc-CcccCCC-cccCCCCCCCCCCCCCCCcCCHHHHHHHHH
Confidence 55566777777778999999999999999988765321100 0000000 00000000 0000 0001123444
Q ss_pred hhHHHHHHHHHHhCCCCceEEEceecc-------CCCC----CCCCCHHHHHHHHHHHHHHHHhcCC
Q 045344 398 GNYDTLLSALKKAGYPDMKIIIGEIGW-------PTDG----HKAATSQSAQKFYDGLFKKLAKRDG 453 (627)
Q Consensus 398 aqvDav~~Am~k~g~~~~~VvItETGW-------PS~G----~~~AS~~NA~~y~~nli~~~~s~~G 453 (627)
..++|...|. ++||.+++|.... || |..= .-+.|++|-.+|...+++.+++..|
T Consensus 142 ~f~~AA~ra~-~aGfDgVeih~ah-GyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg 206 (343)
T cd04734 142 AFADAARRCQ-AGGLDGVELQAAH-GHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVG 206 (343)
T ss_pred HHHHHHHHHH-HcCCCEEEEcccc-chHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcC
Confidence 4445544443 4799999998764 64 4221 1257899999999999999998665
No 67
>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=45.14 E-value=2.5e+02 Score=31.79 Aligned_cols=114 Identities=10% Similarity=0.066 Sum_probs=54.3
Q ss_pred chhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCC
Q 045344 288 FVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYE 367 (627)
Q Consensus 288 ~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~ 367 (627)
...+.+.+++.+|+++ ..|.|+|. ++-.|| .+..+.+...++|+.+.+ +-.+++|+|-....
T Consensus 284 t~~~~~~~i~~lr~~~------p~i~i~td----~IvGfP-------gET~edf~~tl~~v~~l~-~~~~~~f~ys~~~G 345 (449)
T PRK14332 284 SKEEFLDVVKEIRNIV------PDVGITTD----IIVGFP-------NETEEEFEDTLAVVREVQ-FDMAFMFKYSEREG 345 (449)
T ss_pred CHHHHHHHHHHHHHhC------CCCEEEEE----EEeeCC-------CCCHHHHHHHHHHHHhCC-CCEEEEEEecCCCC
Confidence 3556666666666542 22455543 333243 122356777889987655 33567777643321
Q ss_pred CCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEceecc
Q 045344 368 SPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGW 424 (627)
Q Consensus 368 ~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGW 424 (627)
.+ -++.+... ........++..|.+.|..-.....++.-...++|+|.|.+.
T Consensus 346 T~----a~~~~~~~-v~~~~~~~R~~~l~~~~~~~~~~~~~~~vG~~~~vlve~~~~ 397 (449)
T PRK14332 346 TM----AKRKLPDN-VPEEVKSARLTKLVDLQTSISHEQNRARIGRVYSILIENTSR 397 (449)
T ss_pred Ch----hHHhCcCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEEEeccC
Confidence 11 11112111 001112234555555554444444444322457888865443
No 68
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=45.13 E-value=70 Score=34.44 Aligned_cols=71 Identities=21% Similarity=0.321 Sum_probs=47.5
Q ss_pred ccccccCCCCccceeeeCCCCCCCCCHHHHHHHHHhCCCCEEEEe---cC---C--------------h--HHHHHHHhc
Q 045344 171 DNFDYAHIKPVDVGVNWGNLASHPLPAKIIVQMLKDNGIKRAKLF---DA---D--------------E--TSVKELAHT 228 (627)
Q Consensus 171 ~~~~~~~~~~~~iGVnYG~~~~nlpsp~~Vv~lLks~~i~~VRlY---da---D--------------~--~VL~Ala~t 228 (627)
+.|+-+....+.+|++-|+.-|-+| ++|+++|.... .+.-+| +. . + +.++-++..
T Consensus 104 e~ye~aL~~~~VVGLsIgTRPDClp--d~VldlL~e~~-~r~~vWvELGLQT~h~~Tlk~iNRgHd~~~y~dav~r~rkr 180 (312)
T COG1242 104 EMYEQALSEAGVVGLSIGTRPDCLP--DDVLDLLAEYN-KRYEVWVELGLQTAHDKTLKRINRGHDFACYVDAVKRLRKR 180 (312)
T ss_pred HHHHHHhCcCCeeEEeecCCCCCCc--HHHHHHHHHHh-hheEEEEEeccchhhHHHHHHHhcccchHHHHHHHHHHHHc
Confidence 3466677778899999999887777 89999987642 334444 11 1 1 334445678
Q ss_pred CCEE----EEeeCCChhhhh
Q 045344 229 GIEV----MVAIPNGMLFDM 244 (627)
Q Consensus 229 gIkV----~VGV~n~~l~~l 244 (627)
||+| ++|+|-+..+.+
T Consensus 181 gIkvc~HiI~GLPgE~~~~m 200 (312)
T COG1242 181 GIKVCTHLINGLPGETRDEM 200 (312)
T ss_pred CCeEEEEEeeCCCCCCHHHH
Confidence 9975 788887654443
No 69
>PRK09261 phospho-2-dehydro-3-deoxyheptonate aldolase; Validated
Probab=44.74 E-value=2.4e+02 Score=31.19 Aligned_cols=69 Identities=16% Similarity=0.170 Sum_probs=46.8
Q ss_pred cchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEE
Q 045344 391 RYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYL 466 (627)
Q Consensus 391 ~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yi 466 (627)
.+.|..-..+|.....|++.+. ..+|+|. ||.|........|....+.++..+.. |--.--|..+|+||
T Consensus 238 ~~pNy~~~~i~~~~~~l~k~~l-~~~v~VD----~SH~ns~k~~~~Q~~V~~~v~~qi~~--G~~~I~GvMiES~l 306 (349)
T PRK09261 238 KGPNYDAESVAEAKERLEKAGL-PPRIMID----CSHANSGKDHKRQPEVARDVAAQIAA--GNKAIIGVMIESHL 306 (349)
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CCCEEEE----CCCcccCcchhhhHHHHHHHHHHHHc--CCccceEEEEEEec
Confidence 4556556777777788888876 5899998 99988777777777777777666654 32122244456653
No 70
>cd00641 GTP_cyclohydro2 GTP cyclohydrolase II (RibA). GTP cyclohydrolase II catalyzes the conversion of GTP to 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5' phosphate, formate, pyrophosphate (APy), and GMP in the biosynthetic pathway of riboflavin. Riboflavin is the precursor molecule for the synthesis of the coenzymes flavin mononucleotide (FMN) and flavin adenine dinucleotide (FAD) which are essential to cell metabolism. The enzyme is present in plants and numerous pathogenic bacteria, especially gram negative organisms, who are dependent on endogenous synthesis of the vitamin because they lack an appropriate uptake system. For animals and humans, which lack this biosynthetic pathway, riboflavin is the essential vitamin B2. GTP cyclohydrolase II requires magnesium ions for activity and has a bound catalytic zinc. The functionally active form is thought to be a homodimer. A paralogous protein is encoded in the genome of Streptomyces coelicolor, which converts GTP to 2-amino-5-fo
Probab=44.04 E-value=34 Score=34.18 Aligned_cols=36 Identities=33% Similarity=0.572 Sum_probs=31.5
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEee
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAI 236 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV 236 (627)
+|+|+.+|+++|||....+.-+.+|.+.||+|+=-+
T Consensus 133 AQIL~dLGv~~mrLLs~~~~k~~~L~gfglevv~~~ 168 (193)
T cd00641 133 AQILRDLGIKSVRLLTNNPDKIDALEGYGIEVVERV 168 (193)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEe
Confidence 689999999999999988878889999999998444
No 71
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=43.97 E-value=1.1e+02 Score=33.99 Aligned_cols=20 Identities=15% Similarity=0.215 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHcCC
Q 045344 289 VKDTFPALKNVQQALVEAGH 308 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl 308 (627)
.+.++..|+.+|++|++.++
T Consensus 168 ~~nf~~Ll~elr~~l~~~~~ 187 (413)
T cd02873 168 KEQFTALVRELKNALRPDGL 187 (413)
T ss_pred HHHHHHHHHHHHHHhcccCc
Confidence 45678889999999988765
No 72
>PRK12822 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=43.85 E-value=2.8e+02 Score=30.74 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=49.7
Q ss_pred cchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEe
Q 045344 391 RYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFG 468 (627)
Q Consensus 391 ~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFe 468 (627)
...|...+.++.....|++.|.+ .+|+|. =|.|...-...+|....++++..+.. |...--|..+|.||++
T Consensus 237 ~~PNY~~~~v~~a~~~l~~~~l~-~~vmVD----cSH~NS~K~~~~Q~~V~~~v~~q~~~--g~~~I~GvMiES~L~~ 307 (356)
T PRK12822 237 REPNYGLSDVTKASKLLHDEGLN-HRLIID----CSHGNSQKVAKNQISVARELCDQLKE--GEGAIAGVMVESFLQG 307 (356)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCC-CcEEEE----CCCccCCCCHHHHHHHHHHHHHHHHC--CCCeEEEEEEeecccc
Confidence 34666667788888889998876 568886 46666667778898989998888874 4333335555666543
No 73
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=43.05 E-value=2.3e+02 Score=32.29 Aligned_cols=56 Identities=7% Similarity=0.205 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPF 362 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPf 362 (627)
.+..+..++.+|+++. .+-++|.. +..||= +..+.....++||.+.+ +=.++++||
T Consensus 279 ~e~~~~~i~k~R~~~P------d~~i~tDi----IVGFPg-------ETeedFe~tl~lv~e~~-fd~~~~F~Y 334 (437)
T COG0621 279 VEEYLEIIEKLRAARP------DIAISTDI----IVGFPG-------ETEEDFEETLDLVEEVR-FDRLHVFKY 334 (437)
T ss_pred HHHHHHHHHHHHHhCC------CceEeccE----EEECCC-------CCHHHHHHHHHHHHHhC-CCEEeeeec
Confidence 4556666667766553 34455443 333552 22345566778876543 446788776
No 74
>PRK08508 biotin synthase; Provisional
Probab=42.80 E-value=3.9e+02 Score=28.11 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=23.9
Q ss_pred CCHHHHHHHHH---hCCCCEEEEec----C-C------hHHHHHHHhc--CCEEE
Q 045344 195 LPAKIIVQMLK---DNGIKRAKLFD----A-D------ETSVKELAHT--GIEVM 233 (627)
Q Consensus 195 psp~~Vv~lLk---s~~i~~VRlYd----a-D------~~VL~Ala~t--gIkV~ 233 (627)
-++++|++.++ +.+++++-+-+ . + .+++++++.. ++.|.
T Consensus 40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~~~~~e~~~ei~~~ik~~~p~l~i~ 94 (279)
T PRK08508 40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLDDKKLEYVAEAAKAVKKEVPGLHLI 94 (279)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeccCCCCcccHHHHHHHHHHHHhhCCCcEEE
Confidence 58899988664 36887776631 1 1 2566777765 44543
No 75
>PRK12485 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=42.39 E-value=29 Score=38.42 Aligned_cols=36 Identities=22% Similarity=0.304 Sum_probs=31.1
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEee
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAI 236 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV 236 (627)
-+|+|+.+|+++|||. .+|.-+.+|.+.||+|.=-|
T Consensus 330 gAqILr~LGV~kirLL-nNP~K~~~L~~~GIeV~~~v 365 (369)
T PRK12485 330 GAQILQDLGVGKLRHL-GPPLKYAGLTGYDLEVVESI 365 (369)
T ss_pred HHHHHHHcCCCEEEEC-CCchhhhhhhhCCcEEEEEe
Confidence 3689999999999999 77988999999999997333
No 76
>PRK11145 pflA pyruvate formate lyase-activating enzyme 1; Provisional
Probab=42.28 E-value=3.8e+02 Score=27.12 Aligned_cols=27 Identities=11% Similarity=0.199 Sum_probs=19.1
Q ss_pred HHHHHHHHHhhhcCCCceeccCccccc
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
+.+..+++||+....+-.+++.||...
T Consensus 179 ~ei~~l~~~l~~l~~~~~~~l~~~~~~ 205 (246)
T PRK11145 179 DSAHRLGEFIKDMGNIEKIELLPYHEL 205 (246)
T ss_pred HHHHHHHHHHHhcCCcceEEEecCCcc
Confidence 357888999977654556778888653
No 77
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=41.91 E-value=4.2e+02 Score=29.31 Aligned_cols=147 Identities=18% Similarity=0.273 Sum_probs=79.3
Q ss_pred CccceeeeCCCCCC------CCCHHHHH-------HHHHhCCCCEEEEe--cCCh-HHHHH---H-HhcCCEEEEeeCCC
Q 045344 180 PVDVGVNWGNLASH------PLPAKIIV-------QMLKDNGIKRAKLF--DADE-TSVKE---L-AHTGIEVMVAIPNG 239 (627)
Q Consensus 180 ~~~iGVnYG~~~~n------lpsp~~Vv-------~lLks~~i~~VRlY--daD~-~VL~A---l-a~tgIkV~VGV~n~ 239 (627)
+-.||||.|.+-.. .|+|+.++ ++|.+.+|..|.+= .+|. ..++| | +.....+-|||..-
T Consensus 123 pIRIGVN~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~diviS~KsSdv~~~i~ayr~la~~~dyPLHlGVTEA 202 (346)
T TIGR00612 123 AMRIGVNHGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNVVLSMKASDVAETVAAYRLLAERSDYPLHLGVTEA 202 (346)
T ss_pred CEEEecCCCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHhhCCCCceeccccC
Confidence 45689999976321 36666553 57788999988775 4453 33433 3 35788899999752
Q ss_pred h--hhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcc-eEEec
Q 045344 240 M--LFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKM-VKATV 316 (627)
Q Consensus 240 ~--l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~-IkVsT 316 (627)
. ...+- +.|.. +-..+..-+ ++.|+ |+ +.. .. +.-++--++.|++.||... +.|.
T Consensus 203 G~~~~G~I---KSaig-ig~LL~~GI---GDTIR-VS------LT~---dP----~~EV~va~~IL~slglr~~g~~ii- 260 (346)
T TIGR00612 203 GMGVKGIV---KSSAG-IGILLARGI---GDTIR-VS------LTD---DP----THEVPVAFEILQSLGLRARGVEIV- 260 (346)
T ss_pred CCCCCchh---HHHHH-HHHHHhhCC---CCeEE-EE------CCC---Cc----HHHHHHHHHHHHHcCCCcCCCeEE-
Confidence 2 11111 11111 111122222 34554 22 111 11 2334445677888888532 2211
Q ss_pred ccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCcee
Q 045344 317 PLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIV 357 (627)
Q Consensus 317 ~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~v 357 (627)
++ |+.|.-.-|+..++.++-+.|.....|+.|
T Consensus 261 ----SC-----PtCGR~~~dl~~~~~~ve~~l~~~~~~l~V 292 (346)
T TIGR00612 261 ----AC-----PSCGRTGFDVEKVVRRVQEALFHLKTPLKV 292 (346)
T ss_pred ----EC-----CCCCCcCCCHHHHHHHHHHHHhcCCCCCEE
Confidence 11 566666667767788888888766666544
No 78
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=41.85 E-value=3.1e+02 Score=31.72 Aligned_cols=62 Identities=23% Similarity=0.251 Sum_probs=39.1
Q ss_pred HHHHHhhcccccCCCceEEEEEecccccccC-----CCc--cchhhHHHHHHH-HHHHHHHcCCCcceEEe
Q 045344 253 NWVKENVTRWVKDGSVKLKYVAVGNEPFLKS-----YND--SFVKDTFPALKN-VQQALVEAGHGKMVKAT 315 (627)
Q Consensus 253 ~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~-----~~~--~~~~~Llpam~n-I~~aL~~agl~~~IkVs 315 (627)
..+.+-|+.|- ..+..|-+|++.||+.... ... -.++++...|++ +.-+|++.+++..|||-
T Consensus 208 ~Y~vkfi~aY~-~~GI~i~aiT~QNEP~~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~ 277 (496)
T PF02055_consen 208 DYFVKFIQAYK-KEGIPIWAITPQNEPDNGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKIL 277 (496)
T ss_dssp HHHHHHHHHHH-CTT--ESEEESSSSCCGGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEE
T ss_pred HHHHHHHHHHH-HCCCCeEEEeccCCCCCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 44555666663 3468999999999998521 111 124556666775 88999999985557764
No 79
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=41.68 E-value=3.1e+02 Score=30.48 Aligned_cols=57 Identities=12% Similarity=0.174 Sum_probs=43.2
Q ss_pred CccchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHh
Q 045344 389 NHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAK 450 (627)
Q Consensus 389 g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s 450 (627)
+..+.|..-..++.....|++.+.+ .+|+|. ||.|...-....|-.....++..+..
T Consensus 237 g~~~pNy~~~~i~~a~~~l~k~~l~-~~vmVD----~SH~Ns~K~~~~Q~~V~~~v~~qi~~ 293 (353)
T PRK12755 237 GKKGPNYDAASVAACEAQLEKAGLR-PRLMID----CSHANSGKDYRRQPAVAEDVVAQIAA 293 (353)
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCC-CcEEec----CCccccccchhhhHHHHHHHHHHHHc
Confidence 3356666667888888889998876 899998 88887766667777767777777764
No 80
>COG4213 XylF ABC-type xylose transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=41.59 E-value=53 Score=35.79 Aligned_cols=77 Identities=19% Similarity=0.006 Sum_probs=51.7
Q ss_pred hHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHH
Q 045344 219 ETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKN 298 (627)
Q Consensus 219 ~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~n 298 (627)
..||+++..+|-.+.+|=. ..+. -.++.|.+|+...+.+++ ..|.+|+.-|.-+. ..
T Consensus 175 m~VLkp~idsGkik~~Ge~--~~d~--W~ps~Aq~~men~lta~~----~~vdaVvA~nDgta-----------gG---- 231 (341)
T COG4213 175 MKVLKPLIDSGKIKVVGEQ--WTDG--WLPSNAQQIMENLLTANY----NDIDAVVAPNDGTA-----------GG---- 231 (341)
T ss_pred HHHHHHHhhCCceEEeeec--cccc--cCHHHHHHHHHHHHhccc----CceeEEEcCCCchh-----------HH----
Confidence 3799998888854445543 2223 356788899998888874 56888876665221 12
Q ss_pred HHHHHHHcCCCcceEEeccc
Q 045344 299 VQQALVEAGHGKMVKATVPL 318 (627)
Q Consensus 299 I~~aL~~agl~~~IkVsT~~ 318 (627)
+-++|++.||+++|+||--+
T Consensus 232 aI~aL~a~Gl~g~vpVsGQD 251 (341)
T COG4213 232 AIAALKAQGLAGKVPVSGQD 251 (341)
T ss_pred HHHHHHhcccCCCCcccCcc
Confidence 23578889999889977443
No 81
>PRK09936 hypothetical protein; Provisional
Probab=41.50 E-value=4e+02 Score=28.87 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=41.4
Q ss_pred ccceeeeCCCCCC-CCCHHHHHH---HHHhCCCCEEEEe-----cCC--------hHHHHHHHhcCCEEEEeeCCC
Q 045344 181 VDVGVNWGNLASH-PLPAKIIVQ---MLKDNGIKRAKLF-----DAD--------ETSVKELAHTGIEVMVAIPNG 239 (627)
Q Consensus 181 ~~iGVnYG~~~~n-lpsp~~Vv~---lLks~~i~~VRlY-----daD--------~~VL~Ala~tgIkV~VGV~n~ 239 (627)
...|+=|-+...+ --++++--+ .++..|++.+=+= +.| ..+|+++++.||+|.||++-|
T Consensus 20 a~~g~F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG~~~fg~~~g~La~~l~~A~~~Gl~v~vGL~~D 95 (296)
T PRK09936 20 AMKGIFYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYGDADFGGQRGWLAKRLAAAQQAGLKLVVGLYAD 95 (296)
T ss_pred ccccceeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeeccCCCcccchHHHHHHHHHHHHcCCEEEEcccCC
Confidence 4467889888665 456666555 5566888766442 222 367888899999999999965
No 82
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=40.33 E-value=98 Score=34.87 Aligned_cols=20 Identities=20% Similarity=0.312 Sum_probs=15.8
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 045344 290 KDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 290 ~~Llpam~nI~~aL~~agl~ 309 (627)
...+..++.+.+.|.++|+.
T Consensus 263 ~~~~~~~~~~~~~L~~~Gy~ 282 (453)
T PRK13347 263 EERLRQARAVADRLLAAGYV 282 (453)
T ss_pred HHHHHHHHHHHHHHHHCCCE
Confidence 45567777888999999984
No 83
>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=40.20 E-value=1.9e+02 Score=32.66 Aligned_cols=36 Identities=19% Similarity=0.300 Sum_probs=23.3
Q ss_pred CCHHHHHHHH---HhCCCCEEEEecCC--------------hHHHHHHHh-cCC
Q 045344 195 LPAKIIVQML---KDNGIKRAKLFDAD--------------ETSVKELAH-TGI 230 (627)
Q Consensus 195 psp~~Vv~lL---ks~~i~~VRlYdaD--------------~~VL~Ala~-tgI 230 (627)
-++++|++.+ ...|++.|.+.+.+ .++|++++. .++
T Consensus 184 r~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi 237 (459)
T PRK14338 184 RPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGL 237 (459)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCc
Confidence 3567777544 34689999998732 246777776 354
No 84
>PRK14457 ribosomal RNA large subunit methyltransferase N; Provisional
Probab=40.01 E-value=5.4e+02 Score=28.24 Aligned_cols=25 Identities=20% Similarity=0.381 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhcCCCceeccCccccc
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
+.+..+++||... ++-||+-||...
T Consensus 271 e~a~~La~~l~~l--~~~VnLIPynp~ 295 (345)
T PRK14457 271 EHAEELANLLRGF--QSHVNLIPYNPI 295 (345)
T ss_pred HHHHHHHHHHhcC--CCeEEEecCCCC
Confidence 4567788898765 357999999753
No 85
>COG3457 Predicted amino acid racemase [Amino acid transport and metabolism]
Probab=39.36 E-value=1.9e+02 Score=31.72 Aligned_cols=47 Identities=19% Similarity=0.307 Sum_probs=32.4
Q ss_pred hCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCC
Q 045344 410 AGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLR 457 (627)
Q Consensus 410 ~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~r 457 (627)
..++++.|+==-|-.|--|+..+|++|...+++. .+++....|-+++
T Consensus 150 ~~lkGi~~vGlgTnF~Cfg~v~PTp~n~~~ll~~-~~~lE~~~Gi~l~ 196 (353)
T COG3457 150 QQLKGIHLVGLGTNFPCFGDVLPTPENLESLLQG-KKKLEASSGIQLK 196 (353)
T ss_pred hcCCCceEEeeecccccccCcCCCcccHHHHHHH-HHHHHHhcCceeE
Confidence 3567888765557788888888999999888765 4445444465444
No 86
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=39.22 E-value=2.3e+02 Score=29.95 Aligned_cols=137 Identities=15% Similarity=0.161 Sum_probs=65.3
Q ss_pred CCCCCHHHHHHHHHhCCCCEEEEecCC-------hHHHHHHH---hcCCEEEEeeCCChhhh-----hhhchHHHHHHHH
Q 045344 192 SHPLPAKIIVQMLKDNGIKRAKLFDAD-------ETSVKELA---HTGIEVMVAIPNGMLFD-----MAVDYSNAQNWVK 256 (627)
Q Consensus 192 ~nlpsp~~Vv~lLks~~i~~VRlYdaD-------~~VL~Ala---~tgIkV~VGV~n~~l~~-----la~s~~~A~~Wv~ 256 (627)
-..++|.++++.|+..|+++|-+-.+. ..+++.+. ..--+|.||-|- |.. -..+... +.
T Consensus 55 ~~i~~~~eaL~~L~~~G~~~V~VQplhiipG~Ey~~l~~~v~~~~~~F~~i~~g~PL--L~~~g~~~~~~D~~~----va 128 (262)
T PF06180_consen 55 IKIDSPEEALAKLADEGYTEVVVQPLHIIPGEEYEKLRATVEAYKHDFKKIVLGRPL--LYTMGQENSPEDYEA----VA 128 (262)
T ss_dssp -----HHHHHHHHHHCT--EEEEEE--SCSSHHHHHHHHHHHHHCCCSSEEEEE--S--CSS-----SHHHHHH----HH
T ss_pred CCcCCHHHHHHHHHHCCCCEEEEeecceeCcHhHHHHHHHHHHhhccCCeEEecccc--cccccccCChHHHHH----HH
Confidence 357899999999999999999998775 13444433 333589999883 211 1122222 23
Q ss_pred HhhcccccC--CCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCcccc
Q 045344 257 ENVTRWVKD--GSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFR 334 (627)
Q Consensus 257 ~nV~~y~p~--~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~ 334 (627)
+.+...+|. ...-+..+-=|++-. .. .+-..++..|++.++. .|-|+|.+. +|
T Consensus 129 ~aL~~~~~~~~~~~a~vlmGHGt~h~--------an---~~Y~~l~~~l~~~~~~-~v~vgtvEG------~P------- 183 (262)
T PF06180_consen 129 EALAEEFPKKRKDEAVVLMGHGTPHP--------AN---AAYSALQAMLKKHGYP-NVFVGTVEG------YP------- 183 (262)
T ss_dssp HHHHCCS-TT-TTEEEEEEE---SCH--------HH---HHHHHHHHHHHCCT-T-TEEEEETTS------SS-------
T ss_pred HHHHHhccccCCCCEEEEEeCCCCCC--------cc---HHHHHHHHHHHhCCCC-eEEEEEeCC------CC-------
Confidence 334444431 123333333355421 11 2334456778777764 488888763 22
Q ss_pred chhhHHHHHHHHHhhhcCCCceeccCccccc
Q 045344 335 KDIKQHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 335 ~d~~~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
++ ..++..|.+.+ +=-|-+.||.--
T Consensus 184 -~~----~~vi~~L~~~g-~k~V~L~PlMlV 208 (262)
T PF06180_consen 184 -SL----EDVIARLKKKG-IKKVHLIPLMLV 208 (262)
T ss_dssp -BH----HHHHHHHHHHT--SEEEEEEESSS
T ss_pred -CH----HHHHHHHHhcC-CCeEEEEecccc
Confidence 22 23444454433 224888898853
No 87
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=38.88 E-value=1.3e+02 Score=32.15 Aligned_cols=94 Identities=18% Similarity=0.273 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCCCCCc
Q 045344 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPV 373 (627)
Q Consensus 294 pam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~l 373 (627)
.+...+.+..++.|+.+ +++..... . +.|+ .+.+.++..++.+.+.|+.++.=+..... .+
T Consensus 113 ~a~~E~er~v~~~gf~g-~~l~p~~~-~----~~~~--------~~~~~pi~~~a~~~gvpv~ihtG~~~~~~-----~~ 173 (293)
T COG2159 113 AAAEELERRVRELGFVG-VKLHPVAQ-G----FYPD--------DPRLYPIYEAAEELGVPVVIHTGAGPGGA-----GL 173 (293)
T ss_pred HHHHHHHHHHHhcCceE-EEeccccc-C----CCCC--------ChHHHHHHHHHHHcCCCEEEEeCCCCCCc-----cc
Confidence 35677777888777743 55542211 1 1111 13468889999999999999654433211 11
Q ss_pred cccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEceec--cCCCC
Q 045344 374 EYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIG--WPTDG 428 (627)
Q Consensus 374 dyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETG--WPS~G 428 (627)
....+ +. .++|.|. . -||+++||+++.| +|..-
T Consensus 174 ~~~~~--------~p---------~~~~~va---~--~fP~l~IVl~H~G~~~p~~~ 208 (293)
T COG2159 174 EKGHS--------DP---------LYLDDVA---R--KFPELKIVLGHMGEDYPWEL 208 (293)
T ss_pred ccCCC--------Cc---------hHHHHHH---H--HCCCCcEEEEecCCCCchhH
Confidence 11000 00 1334332 2 3799999999999 88753
No 88
>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB. Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.
Probab=38.82 E-value=5.2e+02 Score=28.96 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhcCCCceeccCcccc
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLS 364 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~ 364 (627)
+.+...++||.+.+ +-.+++++|-.
T Consensus 314 ed~~~tl~~i~~~~-~~~~~~~~~sp 338 (438)
T TIGR01574 314 EDFEETLDLLREVE-FDSAFSFIYSP 338 (438)
T ss_pred HHHHHHHHHHHhcC-CCeeeeEEecC
Confidence 45677889988765 33467777643
No 89
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=38.02 E-value=1.1e+02 Score=29.79 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=45.8
Q ss_pred HHHHHHHhc--CCEEEEeeCCChhh---hhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHH
Q 045344 220 TSVKELAHT--GIEVMVAIPNGMLF---DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFP 294 (627)
Q Consensus 220 ~VL~Ala~t--gIkV~VGV~n~~l~---~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llp 294 (627)
.-++.++.. |++|++.|...... .++.+.+..+++++. +..++- .-.+.+|-+==|...... ......++.
T Consensus 53 ~~i~~l~~~~~g~kv~~sigg~~~~~~~~~~~~~~~~~~f~~~-~~~~v~--~~~~DGidiD~E~~~~~~-~~~~~~~~~ 128 (210)
T cd00598 53 GALEELASKKPGLKVLISIGGWTDSSPFTLASDPASRAAFANS-LVSFLK--TYGFDGVDIDWEYPGAAD-NSDRENFIT 128 (210)
T ss_pred HHHHHHHHhCCCCEEEEEEcCCCCCCCchhhcCHHHHHHHHHH-HHHHHH--HcCCCceEEeeeCCCCcC-ccHHHHHHH
Confidence 345666665 99999999753221 234444433333332 222221 123455555445432211 012467899
Q ss_pred HHHHHHHHHHHcCC
Q 045344 295 ALKNVQQALVEAGH 308 (627)
Q Consensus 295 am~nI~~aL~~agl 308 (627)
.|+.+|++|.+.++
T Consensus 129 ll~~lr~~l~~~~~ 142 (210)
T cd00598 129 LLRELRSALGAANY 142 (210)
T ss_pred HHHHHHHHhcccCc
Confidence 99999999977654
No 90
>PRK14019 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein; Provisional
Probab=37.52 E-value=39 Score=37.42 Aligned_cols=35 Identities=23% Similarity=0.447 Sum_probs=31.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEee
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAI 236 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV 236 (627)
+|+|+.+|+++|||.. +|.-+.+|.+.||+|.=-|
T Consensus 328 aqIL~~Lgv~~irLlT-np~K~~~L~~~Gi~V~~~~ 362 (367)
T PRK14019 328 AQILRDLGVGKMRLLS-SPRKFPSMSGFGLEVTGYV 362 (367)
T ss_pred HHHHHHcCCCeEEECC-CcHHHHhhhhCCcEEEEEe
Confidence 6899999999999998 8999999999999997444
No 91
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=37.49 E-value=75 Score=29.06 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.0
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHHHhcCCEEEE
Q 045344 198 KIIVQMLKDNGIKRAKLFD--AD---ETSVKELAHTGIEVMV 234 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYd--aD---~~VL~Ala~tgIkV~V 234 (627)
+++++.++.++++.|+++- .- ..+|++|+..||+|..
T Consensus 50 ~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~ 91 (108)
T TIGR03632 50 EDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTS 91 (108)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEE
Confidence 3455677789999999984 32 4799999999998653
No 92
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=37.36 E-value=4.8e+02 Score=26.85 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=28.6
Q ss_pred CCHHHHHHHHHhCCCCEEEEecC-----------Ch----HHHHHHHhcCCEEE
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDA-----------DE----TSVKELAHTGIEVM 233 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYda-----------D~----~VL~Ala~tgIkV~ 233 (627)
.+..++++++++.|++.|-|.-. .+ .+.++++..||+|.
T Consensus 16 ~~~~e~l~~~~~~G~~~VEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 16 ECWLERLQLAKTCGFDFVEMSVDETDDRLSRLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred CCHHHHHHHHHHcCCCEEEEecCCccchhhccCCCHHHHHHHHHHHHHcCCCce
Confidence 45788999999999999977511 12 34456788999985
No 93
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=36.71 E-value=5.5e+02 Score=27.36 Aligned_cols=80 Identities=15% Similarity=0.182 Sum_probs=38.5
Q ss_pred HHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCC-ccchhhHHHHHHHHH
Q 045344 222 VKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYN-DSFVKDTFPALKNVQ 300 (627)
Q Consensus 222 L~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~-~~~~~~Llpam~nI~ 300 (627)
+++++..|+||+|.|.-..-...+.+.+.+++ +.+.|..++. .-.+.+|=+==|.-..... ......++.+|+.+|
T Consensus 66 i~~~q~~G~KVllSiGG~~~~~~~~~~~~~~~-fa~sl~~~~~--~~g~DGiDiD~E~~~~~~~~~~~~~~~~~~lk~lr 142 (312)
T cd02871 66 IKALQAKGKKVLISIGGANGHVDLNHTAQEDN-FVDSIVAIIK--EYGFDGLDIDLESGSNPLNATPVITNLISALKQLK 142 (312)
T ss_pred HHHHHHCCCEEEEEEeCCCCccccCCHHHHHH-HHHHHHHHHH--HhCCCeEEEecccCCccCCcHHHHHHHHHHHHHHH
Confidence 55667789999999964221111223222222 2333333221 1234455554443211100 012356788888888
Q ss_pred HHHH
Q 045344 301 QALV 304 (627)
Q Consensus 301 ~aL~ 304 (627)
++|.
T Consensus 143 ~~~~ 146 (312)
T cd02871 143 DHYG 146 (312)
T ss_pred HHcC
Confidence 7663
No 94
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=36.41 E-value=3.5e+02 Score=29.67 Aligned_cols=138 Identities=20% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCHHHHHHHHH---hCCCCEEEEecCCh-------HHHHHHHhcCC-EEEEeeCCChhhhhhhchHHHHHHHHHhhcc
Q 045344 193 HPLPAKIIVQMLK---DNGIKRAKLFDADE-------TSVKELAHTGI-EVMVAIPNGMLFDMAVDYSNAQNWVKENVTR 261 (627)
Q Consensus 193 nlpsp~~Vv~lLk---s~~i~~VRlYdaD~-------~VL~Ala~tgI-kV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~ 261 (627)
.+.|+++|..+++ ..|+.+|||=+-.| .+++.++..++ +|.++---..|+.. |..|-...+.
T Consensus 41 ~~Ls~eei~~~~~~~~~~Gv~kvRlTGGEPllR~dl~eIi~~l~~~~~~~islTTNG~~L~~~------a~~Lk~AGl~- 113 (322)
T COG2896 41 ELLSLEEIRRLVRAFAELGVEKVRLTGGEPLLRKDLDEIIARLARLGIRDLSLTTNGVLLARR------AADLKEAGLD- 113 (322)
T ss_pred ccCCHHHHHHHHHHHHHcCcceEEEeCCCchhhcCHHHHHHHHhhcccceEEEecchhhHHHH------HHHHHHcCCc-
Confidence 3558888866554 47899999988765 56777776654 34433221223333 3333332222
Q ss_pred cccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHH
Q 045344 262 WVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHI 341 (627)
Q Consensus 262 y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l 341 (627)
.++|..=+.=-|.+..-. -...+-..|+-|.+|+ ++||. +|||-|+.--++ . ...|
T Consensus 114 -----rVNVSLDsld~e~f~~IT---~~~~~~~Vl~GI~~A~-~~Gl~-pVKlN~Vv~kgv-----------N---d~ei 169 (322)
T COG2896 114 -----RVNVSLDSLDPEKFRKIT---GRDRLDRVLEGIDAAV-EAGLT-PVKLNTVLMKGV-----------N---DDEI 169 (322)
T ss_pred -----EEEeecccCCHHHHHHHh---CCCcHHHHHHHHHHHH-HcCCC-ceEEEEEEecCC-----------C---HHHH
Confidence 122222122222221100 0122344555555554 67886 499987752211 1 1457
Q ss_pred HHHHHHhhhcCCCceeccCcccccC
Q 045344 342 DNILKNLHDNKSPFIVNIYPFLSLY 366 (627)
Q Consensus 342 ~~lldFL~~t~sp~~vNiYPff~~~ 366 (627)
.++++|+...+. .++|.++.
T Consensus 170 ~~l~e~~~~~~~-----~lrfIE~m 189 (322)
T COG2896 170 EDLLEFAKERGA-----QLRFIELM 189 (322)
T ss_pred HHHHHHHhhcCC-----ceEEEEEe
Confidence 788999876554 45666654
No 95
>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein. Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.
Probab=36.30 E-value=2.5e+02 Score=30.24 Aligned_cols=12 Identities=25% Similarity=0.133 Sum_probs=7.0
Q ss_pred CCCEEEEecCCh
Q 045344 208 GIKRAKLFDADE 219 (627)
Q Consensus 208 ~i~~VRlYdaD~ 219 (627)
++..|.|-+-||
T Consensus 136 ~I~~VilSGGDP 147 (321)
T TIGR03822 136 EIWEVILTGGDP 147 (321)
T ss_pred CccEEEEeCCCc
Confidence 566666665553
No 96
>PF13756 Stimulus_sens_1: Stimulus-sensing domain
Probab=35.53 E-value=41 Score=30.86 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhC---CCCEEEEecCChHHH
Q 045344 196 PAKIIVQMLKDN---GIKRAKLFDADETSV 222 (627)
Q Consensus 196 sp~~Vv~lLks~---~i~~VRlYdaD~~VL 222 (627)
.|++|..+|+.+ .-+++||||+|..+|
T Consensus 2 ~pe~a~plLrrL~~Pt~~RARlyd~dG~Ll 31 (112)
T PF13756_consen 2 NPERARPLLRRLISPTRTRARLYDPDGNLL 31 (112)
T ss_pred CHHHHHHHHHHhCCCCCceEEEECCCCCEE
Confidence 367788888764 248999999986544
No 97
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=35.51 E-value=3.6e+02 Score=28.91 Aligned_cols=76 Identities=13% Similarity=0.169 Sum_probs=41.1
Q ss_pred HHHHHHhcCCEEEEeeCCC---hhhhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHH
Q 045344 221 SVKELAHTGIEVMVAIPNG---MLFDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALK 297 (627)
Q Consensus 221 VL~Ala~tgIkV~VGV~n~---~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~ 297 (627)
-+++|+..|++|+|.+.-. .+..-..+.++-.+.+++-|..|-. +.|..-+=|-. +. .......++.+|+
T Consensus 59 ~i~~lk~~G~kViiS~GG~~g~~~~~~~~~~~~~~~a~~~~i~~y~~---dgiDfDiE~~~-~~---d~~~~~~~~~al~ 131 (294)
T cd06543 59 DIAALRAAGGDVIVSFGGASGTPLATSCTSADQLAAAYQKVIDAYGL---THLDFDIEGGA-LT---DTAAIDRRAQALA 131 (294)
T ss_pred HHHHHHHcCCeEEEEecCCCCCccccCcccHHHHHHHHHHHHHHhCC---CeEEEeccCCc-cc---cchhHHHHHHHHH
Confidence 4678889999999999632 2222223333334445555666632 33332221211 11 1122467888888
Q ss_pred HHHHHH
Q 045344 298 NVQQAL 303 (627)
Q Consensus 298 nI~~aL 303 (627)
.||+++
T Consensus 132 ~Lq~~~ 137 (294)
T cd06543 132 LLQKEY 137 (294)
T ss_pred HHHHHC
Confidence 888766
No 98
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=35.00 E-value=3.9e+02 Score=27.51 Aligned_cols=69 Identities=17% Similarity=0.219 Sum_probs=47.1
Q ss_pred CCHHHHHHHHHh-CCCCEEEEecCCh---------HHHHHHH-hcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccc
Q 045344 195 LPAKIIVQMLKD-NGIKRAKLFDADE---------TSVKELA-HTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWV 263 (627)
Q Consensus 195 psp~~Vv~lLks-~~i~~VRlYdaD~---------~VL~Ala-~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~ 263 (627)
.+|.++++.+.+ .|++.+=+.|.|. ++|+.++ ..+++|.||=.-. +.+.++.++..
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n~~~I~~i~~~~~~pi~vGGGIr-------s~e~v~~~l~~------ 97 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHAREFDYIKSLRRLTTKDIEVGGGIR-------TKSQIMDYFAA------ 97 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcchHHHHHHHHhhcCCeEEEcCCcC-------CHHHHHHHHHC------
Confidence 477788888877 6899999998862 5777665 5789999976632 22344444431
Q ss_pred cCCCceEEEEEecccccc
Q 045344 264 KDGSVKLKYVAVGNEPFL 281 (627)
Q Consensus 264 p~~~t~I~~I~VGNEvL~ 281 (627)
+ +..|+||.|.+.
T Consensus 98 --G---a~kvvigt~a~~ 110 (234)
T PRK13587 98 --G---INYCIVGTKGIQ 110 (234)
T ss_pred --C---CCEEEECchHhc
Confidence 1 234789999875
No 99
>PRK14862 rimO ribosomal protein S12 methylthiotransferase; Provisional
Probab=34.91 E-value=3.3e+02 Score=30.64 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
....+.+|+.+++++ ..|.|+|. ++-.|| .+-.+.+...++|+.+.+ +-.+++++|-
T Consensus 280 ~~~~~~~i~~lr~~~------~~i~i~t~----~IvGfP-------gET~edf~~tl~fi~e~~-~d~~~~f~ys 336 (440)
T PRK14862 280 VEKTLERIKKWREIC------PDLTIRST----FIVGFP-------GETEEDFQMLLDFLKEAQ-LDRVGCFKYS 336 (440)
T ss_pred HHHHHHHHHHHHHHC------CCceeccc----EEEECC-------CCCHHHHHHHHHHHHHcC-CCeeeeEeec
Confidence 455666666666543 12455543 222233 123356788899998754 2234555543
No 100
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=34.77 E-value=4.7e+02 Score=28.99 Aligned_cols=144 Identities=18% Similarity=0.285 Sum_probs=75.2
Q ss_pred CccceeeeCCCCCC------CCCHHHHH-------HHHHhCCCCEEEEe--cCChH-HHHH---H-HhcCCEEEEeeCCC
Q 045344 180 PVDVGVNWGNLASH------PLPAKIIV-------QMLKDNGIKRAKLF--DADET-SVKE---L-AHTGIEVMVAIPNG 239 (627)
Q Consensus 180 ~~~iGVnYG~~~~n------lpsp~~Vv-------~lLks~~i~~VRlY--daD~~-VL~A---l-a~tgIkV~VGV~n~ 239 (627)
+-.||||+|.+-.. .|+++.++ ++|..++|..|++- .+|+. .++| | +.....+-|||..-
T Consensus 125 piRIGVN~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i~iS~K~Sdv~~~v~aYr~lA~~~dyPLHLGvTEA 204 (361)
T COG0821 125 PIRIGVNAGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDIKVSVKASDVQLMVAAYRLLAKRCDYPLHLGVTEA 204 (361)
T ss_pred CEEEecccCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcEEEEEEcCCHHHHHHHHHHHHHhcCCCcccceecc
Confidence 45689999976322 57777765 46677899988875 34542 2222 2 35778899999753
Q ss_pred hh--h-hhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEec
Q 045344 240 ML--F-DMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATV 316 (627)
Q Consensus 240 ~l--~-~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT 316 (627)
.. . .+.++.. --.-+.+.| ++.|+ |+.--| .+.-++--++.|+..||......-+
T Consensus 205 G~~~~G~VkSa~a-lg~LL~eGI-------GDTIR-VSLt~~-------------P~~EV~V~~eILqslglR~~~v~~i 262 (361)
T COG0821 205 GMGFKGIVKSAAA-LGALLSEGI-------GDTIR-VSLTAD-------------PVEEVKVAQEILQSLGLRSRGVEVI 262 (361)
T ss_pred cCcccceehHHHH-HHHHHHhcC-------CceEE-EecCCC-------------chhhhHHHHHHHHHhCccccCceEE
Confidence 21 1 1211111 111122222 24554 322111 1333455566688888853211111
Q ss_pred ccccccccccCCCCccccchhhHHHHHHHHHhhhcCCC
Q 045344 317 PLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSP 354 (627)
Q Consensus 317 ~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp 354 (627)
+ =|+.|.-.-|+...+.++.+-|....-|
T Consensus 263 a---------CP~CGR~~~dv~~~~~~~~~~~~~~~~p 291 (361)
T COG0821 263 A---------CPTCGRTEFDVIQTLNEVEQRLEHLKTP 291 (361)
T ss_pred E---------CCCCCceeehHHHHHHHHHHHhhccCCC
Confidence 1 1666765556656666666665444444
No 101
>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=34.14 E-value=6.2e+02 Score=28.36 Aligned_cols=56 Identities=7% Similarity=0.138 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPF 362 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPf 362 (627)
.+.++.+++.+|+++ ..|.|++.. +..||- +..+.+...++||.+.+ +-.+++|||
T Consensus 279 ~~~~~~~v~~lr~~~------~gi~i~~d~----IvG~Pg-------ET~ed~~~tl~~l~~l~-~~~i~~f~~ 334 (437)
T PRK14331 279 KEEYLEKIELLKEYI------PDITFSTDI----IVGFPT-------ETEEDFEETLDVLKKVE-FEQVFSFKY 334 (437)
T ss_pred HHHHHHHHHHHHHhC------CCCEEecCE----EEECCC-------CCHHHHHHHHHHHHhcC-cceeeeeEe
Confidence 455666666666432 124555443 222331 22356778889987765 335677765
No 102
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=34.12 E-value=5.9e+02 Score=26.91 Aligned_cols=123 Identities=10% Similarity=0.118 Sum_probs=71.1
Q ss_pred cCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCC-CCCCccccccccCCc------cccc--CCccchhhh
Q 045344 326 TLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYES-PDFPVEYAFFEEGAK------GLQD--KNHRYTNVL 396 (627)
Q Consensus 326 ~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~-~~i~ldyAlF~~~~~------~v~D--~g~~YtNlf 396 (627)
+|...+.+.++..+.++++++.+++.++.+.+-++.- +... +.... ...+.++.. .+.. +...-..+.
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql~h~--G~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~mt~~ei~~~i 140 (327)
T cd02803 64 YPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQLAHA--GRQAQPNLTG-GPPPAPSAIPSPGGGEPPREMTKEEIEQII 140 (327)
T ss_pred CCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHhhCC--CcCCCCcCCC-CCccCCCCCCCCCCCCCCCcCCHHHHHHHH
Confidence 6777788888877899999999999999887776421 1111 10000 000001000 0000 000112344
Q ss_pred hhhHHHHHHHHHHhCCCCceEEEceec-------cCCC---CC-CCCCHHHHHHHHHHHHHHHHhcCC
Q 045344 397 DGNYDTLLSALKKAGYPDMKIIIGEIG-------WPTD---GH-KAATSQSAQKFYDGLFKKLAKRDG 453 (627)
Q Consensus 397 DaqvDav~~Am~k~g~~~~~VvItETG-------WPS~---G~-~~AS~~NA~~y~~nli~~~~s~~G 453 (627)
+..+++...|. ++||..++|..+ -| .|.. -+ .+.++++-.+|...+++.+++..|
T Consensus 141 ~~~~~aA~~a~-~aGfDgveih~~-~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g 206 (327)
T cd02803 141 EDFAAAARRAK-EAGFDGVEIHGA-HGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVG 206 (327)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcch-hhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcC
Confidence 44455544443 479999999875 24 3432 22 257899999999999999987544
No 103
>KOG0626 consensus Beta-glucosidase, lactase phlorizinhydrolase, and related proteins [Carbohydrate transport and metabolism]
Probab=34.10 E-value=89 Score=36.24 Aligned_cols=73 Identities=18% Similarity=0.317 Sum_probs=49.9
Q ss_pred hCCCCceEEEceeccCCCCCCC----------CCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEeeeccc-cccCC
Q 045344 410 AGYPDMKIIIGEIGWPTDGHKA----------ATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGFLDED-AKSIA 478 (627)
Q Consensus 410 ~g~~~~~VvItETGWPS~G~~~----------AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFelFDE~-wK~~~ 478 (627)
-.|++.+|.|+|-|-+...... .=++..+.|++.+.+.+.. .|. . ..-+|+.+|.|-- |..
T Consensus 403 ~~Y~np~iyItENG~~d~~~~~~~~~~~l~D~~Ri~Y~~~~L~~~~kAi~~-dgv----n-v~GYf~WSLmDnfEw~~-- 474 (524)
T KOG0626|consen 403 DKYGNPPIYITENGFDDLDGGTKSLEVALKDTKRIEYLQNHLQAVLKAIKE-DGV----N-VKGYFVWSLLDNFEWLD-- 474 (524)
T ss_pred hhcCCCcEEEEeCCCCcccccccchhhhhcchHHHHHHHHHHHHHHHHHHh-cCC----c-eeeEEEeEcccchhhhc--
Confidence 3588999999999999875431 3345667777777766653 221 1 1347889999843 654
Q ss_pred CCCcccceeeeecC
Q 045344 479 PGKFERHWGIFRFD 492 (627)
Q Consensus 479 pg~~Er~wGLF~~d 492 (627)
+..-.||||+.|
T Consensus 475 --Gy~~RFGlyyVD 486 (524)
T KOG0626|consen 475 --GYKVRFGLYYVD 486 (524)
T ss_pred --CcccccccEEEe
Confidence 367899999964
No 104
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=34.03 E-value=6.2e+02 Score=27.13 Aligned_cols=42 Identities=14% Similarity=0.297 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHH---hCCCCEEEEecCCh-------HHHHHHHhcC-C-EEEEe
Q 045344 194 PLPAKIIVQMLK---DNGIKRAKLFDADE-------TSVKELAHTG-I-EVMVA 235 (627)
Q Consensus 194 lpsp~~Vv~lLk---s~~i~~VRlYdaD~-------~VL~Ala~tg-I-kV~VG 235 (627)
..+.+++.++++ ..|+..||+.+-+| ++++.++..+ + +|.|.
T Consensus 44 ~ls~eei~~li~~~~~~Gv~~I~~tGGEPllr~dl~~li~~i~~~~~l~~i~it 97 (329)
T PRK13361 44 VLSLEELAWLAQAFTELGVRKIRLTGGEPLVRRGCDQLVARLGKLPGLEELSLT 97 (329)
T ss_pred CCCHHHHHHHHHHHHHCCCCEEEEECcCCCccccHHHHHHHHHhCCCCceEEEE
Confidence 456777766554 57899999998664 5667676654 4 44443
No 105
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=33.96 E-value=3.3e+02 Score=27.70 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=36.3
Q ss_pred eeeeCCCCCCCCCHHHHHHHHHhCCCCEEEEecC---Ch-HHHHHHHhcCCEEEE
Q 045344 184 GVNWGNLASHPLPAKIIVQMLKDNGIKRAKLFDA---DE-TSVKELAHTGIEVMV 234 (627)
Q Consensus 184 GVnYG~~~~nlpsp~~Vv~lLks~~i~~VRlYda---D~-~VL~Ala~tgIkV~V 234 (627)
-+|.+..-..+| .+++++.++..||+.|-|+.. ++ .+.++++.+||+|..
T Consensus 5 ~~~~~~~~~~~~-l~~~l~~~a~~Gf~~VEl~~~~~~~~~~~~~~l~~~gl~~~~ 58 (258)
T PRK09997 5 SANLSMLFGEYD-FLARFEKAAQCGFRGVEFMFPYDYDIEELKQVLASNKLEHTL 58 (258)
T ss_pred eeeeehhccCCC-HHHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHHHHcCCcEEE
Confidence 355554434443 578889999999999998764 33 566788899999975
No 106
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=33.87 E-value=5.1e+02 Score=27.63 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=29.2
Q ss_pred CCCCHHHHHHHH---HhCCCCEEEEecCCh-------HHHHHHHh-cCC-EEEEe
Q 045344 193 HPLPAKIIVQML---KDNGIKRAKLFDADE-------TSVKELAH-TGI-EVMVA 235 (627)
Q Consensus 193 nlpsp~~Vv~lL---ks~~i~~VRlYdaD~-------~VL~Ala~-tgI-kV~VG 235 (627)
...+.+++.+++ ...++.+|++.+-+| .+|+.++. .++ +|.|.
T Consensus 41 ~~ls~eei~~~i~~~~~~gv~~V~ltGGEPll~~~l~~li~~i~~~~gi~~v~it 95 (334)
T TIGR02666 41 ELLTFEEIERLVRAFVGLGVRKVRLTGGEPLLRKDLVELVARLAALPGIEDIALT 95 (334)
T ss_pred CCCCHHHHHHHHHHHHHCCCCEEEEECccccccCCHHHHHHHHHhcCCCCeEEEE
Confidence 355677776654 457899999998654 46676665 577 56553
No 107
>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125. This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.
Probab=33.70 E-value=4e+02 Score=29.68 Aligned_cols=27 Identities=4% Similarity=0.170 Sum_probs=19.0
Q ss_pred hHHHHHHHHHhhhcCCCceeccCccccc
Q 045344 338 KQHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 338 ~~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
.+.+...++||.+.+ +-.+++++|--+
T Consensus 301 ~e~~~~t~~fl~~~~-~~~~~~~~~sp~ 327 (430)
T TIGR01125 301 EEDFQELLDFVEEGQ-FDRLGAFTYSPE 327 (430)
T ss_pred HHHHHHHHHHHHhcC-CCEEeeeeccCC
Confidence 356788899997754 445678877654
No 108
>PRK08815 GTP cyclohydrolase; Provisional
Probab=33.56 E-value=56 Score=36.32 Aligned_cols=37 Identities=38% Similarity=0.538 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
+|+|+..|+++|||....|.-+.+|.+.||+|.=-++
T Consensus 305 AQIL~dLGV~kirLLTnnp~K~~~L~g~gieVv~~vp 341 (375)
T PRK08815 305 VAMLRGLGITRVRLLTNNPTKAERLRAAGIEVEDRIR 341 (375)
T ss_pred HHHHHHcCCCeEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 6899999999999999999888999999999974454
No 109
>PRK09318 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=33.31 E-value=57 Score=36.40 Aligned_cols=38 Identities=34% Similarity=0.593 Sum_probs=33.5
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
.+|+|+..|+++|||....|.-+.+|.+.||+|.=-++
T Consensus 319 gAqIL~dLGV~~irLLTNnp~K~~~L~~~GieV~~~vp 356 (387)
T PRK09318 319 AFQILKALGIEKVRLLTNNPRKTKALEKYGIEVVETVP 356 (387)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 36899999999999999999999999999999985554
No 110
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=32.52 E-value=5.1e+02 Score=26.36 Aligned_cols=117 Identities=10% Similarity=0.024 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHHcCCCcceEEecccccccccccCCC--C--ccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCCC
Q 045344 294 PALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPS--D--GVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYESP 369 (627)
Q Consensus 294 pam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS--~--g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~~ 369 (627)
..++.+++.+++.|+. |..-++.. .. ||+. . ..-+.+..+.++.++++.+..|...+ -++|......
T Consensus 47 ~~~~~l~~~~~~~gl~--v~s~~~~~-~~---~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i-~~~~~~~~~~-- 117 (275)
T PRK09856 47 GGIKQIKALAQTYQMP--IIGYTPET-NG---YPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYT-LISAAHAGYL-- 117 (275)
T ss_pred hHHHHHHHHHHHcCCe--EEEecCcc-cC---cCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEE-EEcCCCCCCC--
Confidence 3578899999999873 32111111 11 1111 0 11122223567788888887787764 3445432110
Q ss_pred CCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHH
Q 045344 370 DFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKF 440 (627)
Q Consensus 370 ~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y 440 (627)
.+ +...++.+++.+....+.+.-.+++|.| |+-.|..+....+++....+
T Consensus 118 ----------------~~----~~~~~~~~~~~l~~l~~~a~~~gv~l~i-E~~~~~~~~~~~t~~~~~~l 167 (275)
T PRK09856 118 ----------------TP----PNVIWGRLAENLSELCEYAENIGMDLIL-EPLTPYESNVVCNANDVLHA 167 (275)
T ss_pred ----------------CC----HHHHHHHHHHHHHHHHHHHHHcCCEEEE-ecCCCCcccccCCHHHHHHH
Confidence 00 1112233333333332222224678877 87666655545666665554
No 111
>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=32.38 E-value=2.5e+02 Score=31.68 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=30.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPF 362 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPf 362 (627)
.+.++.+++.+|+++ ..|.+++.. +..||- +..+.+...++||.+.+ +-.+++++|
T Consensus 283 ~e~~~~~v~~lr~~~------~~i~i~~d~----IvG~Pg-------ET~ed~~~tl~~l~~~~-~~~~~~f~y 338 (446)
T PRK14337 283 MARYLDIVTDLRAAR------PDIALTTDL----IVGFPG-------ETEEDFEQTLEAMRTVG-FASSFSFCY 338 (446)
T ss_pred HHHHHHHHHHHHHhC------CCCeEEEeE----EEECCC-------CCHHHHHHHHHHHHhcC-CCeeEEEec
Confidence 445556666655442 125555543 322431 22356788899987654 445666655
No 112
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=32.10 E-value=4.7e+02 Score=26.68 Aligned_cols=89 Identities=20% Similarity=0.259 Sum_probs=52.1
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHh--cCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCce
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDAD---ETSVKELAH--TGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSVK 269 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYdaD---~~VL~Ala~--tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t~ 269 (627)
-+|+|+.+.+ +.|.+.|++|-++ +.-|++++. .+++++..=. + +.+.+.+|++. -
T Consensus 117 ~T~~E~~~A~-~~Gad~vklFPa~~~G~~~ik~l~~~~p~ip~~atGG---I-----~~~N~~~~l~a-----------G 176 (213)
T PRK06552 117 MTVTEIVTAL-EAGSEIVKLFPGSTLGPSFIKAIKGPLPQVNVMVTGG---V-----NLDNVKDWFAA-----------G 176 (213)
T ss_pred CCHHHHHHHH-HcCCCEEEECCcccCCHHHHHHHhhhCCCCEEEEECC---C-----CHHHHHHHHHC-----------C
Confidence 3678887776 4789999999665 467777764 2366542211 1 12445566552 3
Q ss_pred EEEEEecccccccCCCccchhhHHHHHHHHHHHHH
Q 045344 270 LKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALV 304 (627)
Q Consensus 270 I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~ 304 (627)
+.+|+||...+.... ...++.+-...+.++++++
T Consensus 177 a~~vavgs~l~~~~~-~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 177 ADAVGIGGELNKLAS-QGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred CcEEEEchHHhCccc-cCCHHHHHHHHHHHHHHHH
Confidence 457888988754311 1124455555566655554
No 113
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=32.03 E-value=1.1e+02 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=28.2
Q ss_pred HHHHHHHHhCCCCEEEEec----------CC---hHHHHHHHhcCCEEEE
Q 045344 198 KIIVQMLKDNGIKRAKLFD----------AD---ETSVKELAHTGIEVMV 234 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYd----------aD---~~VL~Ala~tgIkV~V 234 (627)
+++++.++.+|++.|+++- +- ..+|++|+..||+|..
T Consensus 53 ~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~ 102 (114)
T TIGR03628 53 GRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 102 (114)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEE
Confidence 4566677789999888873 22 3789999999999753
No 114
>PF02811 PHP: PHP domain; InterPro: IPR004013 The PHP (Polymerase and Histidinol Phosphatase) domain is a putative phosphoesterase domain. This family is often associated with an N-terminal region IPR003141 from INTERPRO.; GO: 0003824 catalytic activity; PDB: 2WJE_A 3QY8_A 2WJD_A 2WJF_A 1PB0_B 1M68_A 1M65_A 3E38_B 2W9M_A 3E0F_A ....
Probab=31.95 E-value=1.2e+02 Score=28.11 Aligned_cols=45 Identities=20% Similarity=0.279 Sum_probs=36.8
Q ss_pred CCCCHHHHHHHHHhCCCCEEEEecCC-----hHHHHHHHhcCCEEEEeeC
Q 045344 193 HPLPAKIIVQMLKDNGIKRAKLFDAD-----ETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 193 nlpsp~~Vv~lLks~~i~~VRlYdaD-----~~VL~Ala~tgIkV~VGV~ 237 (627)
-..+++++++..++.|++.|=|=|-+ +...+.++..+|+|++||-
T Consensus 14 g~~~~~e~v~~A~~~Gl~~i~iTDH~~~~~~~~~~~~~~~~~i~vi~G~E 63 (175)
T PF02811_consen 14 GKDSPEEYVEQAKEKGLDAIAITDHNNFAGYPDFYKEAKKKGIKVIPGVE 63 (175)
T ss_dssp SSSSHHHHHHHHHHTTESEEEEEEETTTTTHHHHHHHHHHTTSEEEEEEE
T ss_pred hcCCHHHHHHHHHHcCCCEEEEcCCcccccchHHHHHHHhcCCceEEeEe
Confidence 34588999999999999999887654 3556677789999999996
No 115
>PLN02831 Bifunctional GTP cyclohydrolase II/ 3,4-dihydroxy-2-butanone-4-phosphate synthase
Probab=31.88 E-value=60 Score=36.96 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
-+|+|+.+|+++|||..-.|.-+.+|.+.||+|.=-|+
T Consensus 372 gAqIL~dLGI~~irLLTNNp~K~~~L~~~GieVve~vp 409 (450)
T PLN02831 372 GAQILRDLGVRTMRLMTNNPAKYTGLKGYGLAVVGRVP 409 (450)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 36899999999999999999999999999999974444
No 116
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=31.82 E-value=4.1e+02 Score=29.87 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=15.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCC
Q 045344 289 VKDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~ 309 (627)
.++.+..++.+.+.|.++|+.
T Consensus 261 ~e~~~~~~~~~~~~L~~~Gy~ 281 (455)
T TIGR00538 261 AEEKLDILQETIAFLTEAGYQ 281 (455)
T ss_pred HHHHHHHHHHHHHHHHHCCCE
Confidence 345566778888999999984
No 117
>PRK09314 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.82 E-value=59 Score=35.72 Aligned_cols=34 Identities=29% Similarity=0.414 Sum_probs=30.6
Q ss_pred HHHHHHhCCCCEEEEecCC-hHHHHHHHhcCCEEE
Q 045344 200 IVQMLKDNGIKRAKLFDAD-ETSVKELAHTGIEVM 233 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD-~~VL~Ala~tgIkV~ 233 (627)
.+|+|+.+|+++|||.... |.-+.+|.+.||+|.
T Consensus 300 gaqIL~dLGi~~irLlTnn~p~K~~~L~~~GieV~ 334 (339)
T PRK09314 300 GAQILKYLGIKDIKLLSSSEDKEYVGLSGFGLNIV 334 (339)
T ss_pred HHHHHHHCCCCEEEECCCCChhhhhhHhhCCcEEE
Confidence 4689999999999999998 888889999999986
No 118
>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]
Probab=31.81 E-value=55 Score=36.26 Aligned_cols=122 Identities=15% Similarity=0.176 Sum_probs=69.4
Q ss_pred CCHHHH---HHHHHhCCCCEEEEecC------------ChHHHHHHHhcCCEEEEeeC--------CChhhhh---hhc-
Q 045344 195 LPAKII---VQMLKDNGIKRAKLFDA------------DETSVKELAHTGIEVMVAIP--------NGMLFDM---AVD- 247 (627)
Q Consensus 195 psp~~V---v~lLks~~i~~VRlYda------------D~~VL~Ala~tgIkV~VGV~--------n~~l~~l---a~s- 247 (627)
|+.+|. .++++++ +.+++||. |...++.|.+.|..+.|.-. -+.+..+ .++
T Consensus 215 Pt~eqw~ki~~~~~~k--~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMGLYgERvGa~svvc~~a 292 (427)
T KOG1411|consen 215 PTKEQWEKISDLIKEK--NLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMGLYGERVGALSVVCKDA 292 (427)
T ss_pred ccHHHHHHHHHHhhhc--cccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcchhhhccceeEEEecCH
Confidence 555554 4555554 67777764 34678888888888877543 2222222 222
Q ss_pred --hHHHHHHHHHhhcccccCC---CceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEeccccccc
Q 045344 248 --YSNAQNWVKENVTRWVKDG---SVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADV 322 (627)
Q Consensus 248 --~~~A~~Wv~~nV~~y~p~~---~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~v 322 (627)
....+++++.-|.+.|..| +.+|...++.+..|...--. .+..+..-|..+|+.|.+. | .+-.++..|+.
T Consensus 293 d~A~rV~SQlk~liRpmYSnPP~hGArIv~~Il~d~~l~~~W~~-evk~MadRi~~mR~~L~d~-L---~~~gs~~~W~h 367 (427)
T KOG1411|consen 293 DEAKRVESQLKILIRPMYSNPPLHGARIVATILSDPDLKNQWLG-EVKGMADRIISMRQQLFDA-L---EKEGSPGNWSH 367 (427)
T ss_pred HHHHHHHHHHHHHhcccccCCCccchhhhhhccCChHHHHHHHH-HHHHHHHhhhhhHHHHhHH-h---hcCCCCccHHH
Confidence 2344678888888877432 45777778888877641101 1334455566677777543 1 23345555443
Q ss_pred c
Q 045344 323 Y 323 (627)
Q Consensus 323 l 323 (627)
+
T Consensus 368 I 368 (427)
T KOG1411|consen 368 I 368 (427)
T ss_pred H
Confidence 3
No 119
>PRK09311 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II protein; Provisional
Probab=31.80 E-value=61 Score=36.31 Aligned_cols=38 Identities=24% Similarity=0.435 Sum_probs=33.2
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
.+++|+..|+++|||....|.-+.+|.+.||+|.=-++
T Consensus 338 gaqIL~~LGv~~irLLTnnp~K~~~L~~~GieV~~~v~ 375 (402)
T PRK09311 338 GAQILVDLGVRSMRLLTNNPRKIAGLQGYGLHVTERVP 375 (402)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHhhCCCEEEEEec
Confidence 46899999999999999999989999999999974443
No 120
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=30.94 E-value=1e+02 Score=29.07 Aligned_cols=40 Identities=25% Similarity=0.306 Sum_probs=36.6
Q ss_pred HHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 198 KIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
..++++|+.+|++.|=+...-+..+.+|+..||+|+.+-+
T Consensus 55 ~~~a~~l~~~gvdvvi~~~iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 55 IRIAELLVDEGVDVVIASNIGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHHHHcCCCEEEECccCHHHHHHHHHcCcEEEecCC
Confidence 3678999999999999988889999999999999999987
No 121
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=30.83 E-value=1.2e+02 Score=29.12 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=28.1
Q ss_pred HHHHHHHHhCCCCEEEEe--c--------CC---hHHHHHHHhcCCEEEE
Q 045344 198 KIIVQMLKDNGIKRAKLF--D--------AD---ETSVKELAHTGIEVMV 234 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlY--d--------aD---~~VL~Ala~tgIkV~V 234 (627)
+++++.++.+|++.|+++ + .- ..+|+||+..||+|..
T Consensus 60 e~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~ 109 (132)
T PRK09607 60 EKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGR 109 (132)
T ss_pred HHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEE
Confidence 455667778999988888 3 33 3699999999999753
No 122
>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal. This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).
Probab=30.75 E-value=6.4e+02 Score=26.33 Aligned_cols=42 Identities=17% Similarity=0.441 Sum_probs=29.9
Q ss_pred CCCCHHHHHHHH---HhCCCCEEEEecCCh-------HHHHHHHhcCC-EEEE
Q 045344 193 HPLPAKIIVQML---KDNGIKRAKLFDADE-------TSVKELAHTGI-EVMV 234 (627)
Q Consensus 193 nlpsp~~Vv~lL---ks~~i~~VRlYdaD~-------~VL~Ala~tgI-kV~V 234 (627)
...+++++.+++ +..+++.|++.+-+| ++++.++..++ +|.|
T Consensus 38 ~~ls~eei~~~i~~~~~~gi~~I~~tGGEPll~~~l~~iv~~l~~~g~~~v~i 90 (302)
T TIGR02668 38 NELSPEEIERIVRVASEFGVRKVKITGGEPLLRKDLIEIIRRIKDYGIKDVSM 90 (302)
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEEECcccccccCHHHHHHHHHhCCCceEEE
Confidence 456777776654 457899999998664 56777777787 5544
No 123
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=30.05 E-value=1.4e+02 Score=33.02 Aligned_cols=19 Identities=26% Similarity=0.263 Sum_probs=14.1
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q 045344 291 DTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 291 ~Llpam~nI~~aL~~agl~ 309 (627)
..+.....++..|+++|+.
T Consensus 228 ~~~~~~~~~~~~L~~~Gy~ 246 (400)
T PRK07379 228 TTAAMYRLAQEILTQAGYE 246 (400)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 3445556688999999995
No 124
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=29.95 E-value=5.9e+02 Score=25.68 Aligned_cols=39 Identities=10% Similarity=0.233 Sum_probs=23.9
Q ss_pred HHHHHHhCCCCEEEEecCC-----------hHHHHHHHhcC--CEEEEeeCC
Q 045344 200 IVQMLKDNGIKRAKLFDAD-----------ETSVKELAHTG--IEVMVAIPN 238 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD-----------~~VL~Ala~tg--IkV~VGV~n 238 (627)
+++.|.+.|+..|-+-... .++|+.++..+ +++.+-+.+
T Consensus 24 i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~ 75 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRN 75 (265)
T ss_pred HHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccC
Confidence 4455566788888776432 25777777665 565554443
No 125
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=29.71 E-value=3.8e+02 Score=29.05 Aligned_cols=17 Identities=24% Similarity=0.180 Sum_probs=14.0
Q ss_pred hhhHHHHHHHHHHHHHH
Q 045344 289 VKDTFPALKNVQQALVE 305 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~ 305 (627)
...++..|+.+|++|.+
T Consensus 134 ~~n~~~ll~elr~~l~~ 150 (345)
T cd02878 134 GKNYLEFLKLLKSKLPS 150 (345)
T ss_pred HHHHHHHHHHHHHHhCc
Confidence 45788899999999965
No 126
>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=29.36 E-value=6.2e+02 Score=25.76 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=29.3
Q ss_pred CHHHHHHHHHhCCCCEEEEecC-----------C----hHHHHHHHhcCCEEEE
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDA-----------D----ETSVKELAHTGIEVMV 234 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYda-----------D----~~VL~Ala~tgIkV~V 234 (627)
+.++.++.+++.|++.|-|.-. + ..+.++++.+||+|..
T Consensus 17 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gl~i~~ 70 (284)
T PRK13210 17 SWEERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYETGVRIPS 70 (284)
T ss_pred CHHHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHHcCCCceE
Confidence 5688999999999999988521 1 1355677889999863
No 127
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=29.31 E-value=1.9e+02 Score=32.07 Aligned_cols=91 Identities=27% Similarity=0.542 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhcCCCceeccCcccccCCCCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHhCC----CC
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLSLYESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKAGY----PD 414 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~~~~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~g~----~~ 414 (627)
+-++.+++.|++.+--+++.++|+...... +|.+| +. ++..++ +.
T Consensus 83 Pd~~~~~~~l~~~G~~~~~~~~P~v~~~~~-----~~~~~------------------~~--------~~~~~~~v~~~~ 131 (441)
T PF01055_consen 83 PDPKQMIDELHDQGIKVVLWVHPFVSNDSP-----DYENY------------------DE--------AKEKGYLVKNPD 131 (441)
T ss_dssp TTHHHHHHHHHHTT-EEEEEEESEEETTTT-----B-HHH------------------HH--------HHHTT-BEBCTT
T ss_pred cchHHHHHhHhhCCcEEEEEeecccCCCCC-----cchhh------------------hh--------HhhcCceeeccc
Confidence 457889999999999999999998764321 12222 11 112222 22
Q ss_pred ceEEEceeccCCCCCC-CCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEEee
Q 045344 415 MKIIIGEIGWPTDGHK-AATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLFGF 469 (627)
Q Consensus 415 ~~VvItETGWPS~G~~-~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiFel 469 (627)
-...+++. ||-.+.. .-+-..++.++...++.+....| ++.|++.+
T Consensus 132 g~~~~~~~-w~g~~~~~Dftnp~a~~w~~~~~~~~~~~~G--------vdg~w~D~ 178 (441)
T PF01055_consen 132 GSPYIGRV-WPGKGGFIDFTNPEARDWWKEQLKELLDDYG--------VDGWWLDF 178 (441)
T ss_dssp SSB-EEEE-TTEEEEEB-TTSHHHHHHHHHHHHHHHTTST---------SEEEEES
T ss_pred CCcccccc-cCCcccccCCCChhHHHHHHHHHHHHHhccC--------CceEEeec
Confidence 35567777 8854332 23445588898888888775434 78888775
No 128
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=29.05 E-value=4e+02 Score=28.73 Aligned_cols=58 Identities=16% Similarity=0.257 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
..+.+..|+.++++. +.|+++|..-... . |-.+.+.+.++||.+. .+-.+.+-+||..
T Consensus 190 ~e~~Le~l~~ak~~~------pgi~~~TgiIVGl-G-----------ETeee~~etl~~Lrel-g~d~v~igqYl~p 247 (302)
T TIGR00510 190 YRWSLKLLERAKEYL------PNLPTKSGIMVGL-G-----------ETNEEIKQTLKDLRDH-GVTMVTLGQYLRP 247 (302)
T ss_pred HHHHHHHHHHHHHhC------CCCeecceEEEEC-C-----------CCHHHHHHHHHHHHhc-CCCEEEeecccCC
Confidence 455566666665432 2356666543332 1 2235677888888766 3556677777765
No 129
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=28.79 E-value=1.5e+02 Score=27.98 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=33.9
Q ss_pred CHHHHHHHHHhCCCCEEEEecC---------------------C--hHHHHHHHhcCCEEEEeeC
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDA---------------------D--ETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYda---------------------D--~~VL~Ala~tgIkV~VGV~ 237 (627)
.|+++++.||..+++.|-||.- | .++++|++..||+|++-+.
T Consensus 1 D~~~~~~~lk~~~v~si~i~a~~h~g~ayYPt~~~~~hp~L~~Dllge~v~a~h~~Girv~ay~~ 65 (132)
T PF14871_consen 1 DPEQFVDTLKEAHVNSITIFAKCHGGYAYYPTKVGPRHPGLKRDLLGEQVEACHERGIRVPAYFD 65 (132)
T ss_pred CHHHHHHHHHHhCCCEEEEEcccccEEEEccCCCCcCCCCCCcCHHHHHHHHHHHCCCEEEEEEe
Confidence 3688999999988888888753 1 2677899999999998875
No 130
>PRK06256 biotin synthase; Validated
Probab=28.41 E-value=7.5e+02 Score=26.36 Aligned_cols=22 Identities=14% Similarity=0.237 Sum_probs=15.8
Q ss_pred CCHHHHHHHHH---hCCCCEEEEec
Q 045344 195 LPAKIIVQMLK---DNGIKRAKLFD 216 (627)
Q Consensus 195 psp~~Vv~lLk---s~~i~~VRlYd 216 (627)
-++++|++.++ ..|+.++-+..
T Consensus 91 ~s~eeI~~~~~~~~~~g~~~~~l~~ 115 (336)
T PRK06256 91 LDIEELIEAAKEAIEEGAGTFCIVA 115 (336)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEe
Confidence 47888887654 46888888764
No 131
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.33 E-value=3.6e+02 Score=27.81 Aligned_cols=69 Identities=17% Similarity=0.146 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhCCCCEEEEecCCh--------HHHHHHHh-cCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCC
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDADE--------TSVKELAH-TGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDG 266 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYdaD~--------~VL~Ala~-tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~ 266 (627)
.|-++++.+++.+++.+-+.|.|. ++++.++. .-++|.||=.-. +.+.++.|+.. +
T Consensus 31 dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIr-------s~e~~~~~l~~--------G 95 (232)
T PRK13586 31 NPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIR-------DIEKAKRLLSL--------D 95 (232)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcC-------CHHHHHHHHHC--------C
Confidence 688899999889999999999873 67777765 434788865422 23445555542 1
Q ss_pred CceEEEEEeccccccc
Q 045344 267 SVKLKYVAVGNEPFLK 282 (627)
Q Consensus 267 ~t~I~~I~VGNEvL~~ 282 (627)
+..|+||.|.+..
T Consensus 96 ---a~kvvigt~a~~~ 108 (232)
T PRK13586 96 ---VNALVFSTIVFTN 108 (232)
T ss_pred ---CCEEEECchhhCC
Confidence 2347899998753
No 132
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.27 E-value=3.5e+02 Score=26.85 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=20.4
Q ss_pred HHHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCE
Q 045344 198 KIIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIE 231 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIk 231 (627)
.++++.|..+|.++|=+....+ ..++|++..++.
T Consensus 105 ~~~~~~L~~~G~~~i~~i~~~~~~~~~~~R~~Gf~~a~~~~~~~ 148 (269)
T cd06293 105 RLATRHLARAGHRRIAFVGGPDALISARERYAGYREALAEAHIP 148 (269)
T ss_pred HHHHHHHHHCCCceEEEEecCcccccHHHHHHHHHHHHHHcCCC
Confidence 4556667667888777663221 244666677764
No 133
>cd06418 GH25_BacA-like BacA is a bacterial lysin from Enterococcus faecalis that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. BacA is homologous to the YbfG and YkuG lysins of Bacillus subtilis. BacA has a C-terminal catalytic glycosyl hydrolase family 25 (GH25) domain and an N-terminal peptidoglycan-binding domain comprised of three alpha helices which is similar to a domain found in matrixins.
Probab=28.15 E-value=6.6e+02 Score=25.61 Aligned_cols=108 Identities=20% Similarity=0.203 Sum_probs=66.3
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCC-----------hHHHHHHHhcCCEEEEeeCCCh---hh--hhhhchHHHHHHHHH
Q 045344 194 PLPAKIIVQMLKDNGIKRAKLFDAD-----------ETSVKELAHTGIEVMVAIPNGM---LF--DMAVDYSNAQNWVKE 257 (627)
Q Consensus 194 lpsp~~Vv~lLks~~i~~VRlYdaD-----------~~VL~Ala~tgIkV~VGV~n~~---l~--~la~s~~~A~~Wv~~ 257 (627)
.|++ ..++.||+.++..|=.|-++ +.=+++|...||+|+. |+... .. ..+.-...|.+-+..
T Consensus 20 ~~t~-~~a~~l~~~gy~~vgrYls~~~~~~~~k~lt~~e~~~i~~~Gl~~~p-Iyq~~~~~~~~~~~~~G~~dA~~A~~~ 97 (212)
T cd06418 20 QPTD-ARAQTLKAAGYGIVGRYLTGSPGGCLSKNLTATELETITAAGLKVFP-IYQGGGYSLDYFGYEQGVKDARDAVAA 97 (212)
T ss_pred cCCH-HHHHHHHHCCCeEEEEEcCCCCCCCCCCCCCHHHHHHHHHCCCEEEE-EEECCCccccccCHHHHHHHHHHHHHH
Confidence 4554 56777888888888777443 2456888899999764 33211 11 112223344444444
Q ss_pred hhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCC
Q 045344 258 NVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 258 nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~ 309 (627)
+..-=.| ...+.++.|=-.... .+....++|+++-+.++|...||.
T Consensus 98 A~~lG~p--~gs~IYfavD~d~~~----~~~~~~v~~Y~~a~~~~l~~~gY~ 143 (212)
T cd06418 98 ARALGFP--PGTIIYFAVDFDALD----DEVTEVILPYFRGWNDALHEAGYR 143 (212)
T ss_pred HHHcCCC--CCCEEEEEeecCCCc----chhHHHHHHHHHHHHHHHHhcCCc
Confidence 4433334 345557777555432 124568999999999999999873
No 134
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=28.09 E-value=9.3e+02 Score=27.35 Aligned_cols=57 Identities=4% Similarity=0.080 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
..+++.+++.+|+++ ..+.|+|. ++..|| .+..+.+...++||.+.+- -.+++|+|-
T Consensus 307 ~~~~~~~i~~ir~~~------~~~~i~~d----~IvGfP-------gET~edf~~tl~~i~~l~~-~~~~v~~~s 363 (467)
T PRK14329 307 REWYLDRIDAIRRII------PDCGISTD----MIAGFP-------TETEEDHQDTLSLMEEVGY-DFAFMFKYS 363 (467)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEe----EEEeCC-------CCCHHHHHHHHHHHHhhCC-CeEeeeEec
Confidence 445566666666532 22556654 333344 1234567888999887653 245666654
No 135
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=27.99 E-value=2.6e+02 Score=30.56 Aligned_cols=19 Identities=5% Similarity=0.071 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHcCCCc
Q 045344 292 TFPALKNVQQALVEAGHGK 310 (627)
Q Consensus 292 Llpam~nI~~aL~~agl~~ 310 (627)
...-++.++..|+++|+..
T Consensus 212 ~~~~~~~~~~~L~~~Gy~~ 230 (353)
T PRK05904 212 EAEQLNYIKAKFNKLNYKR 230 (353)
T ss_pred HHHHHHHHHHHHHHcCCcE
Confidence 3455667888899999853
No 136
>CHL00041 rps11 ribosomal protein S11
Probab=27.68 E-value=1.4e+02 Score=27.78 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCCEEEEec--CC---hHHHHHHHhcCCEEE
Q 045344 198 KIIVQMLKDNGIKRAKLFD--AD---ETSVKELAHTGIEVM 233 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYd--aD---~~VL~Ala~tgIkV~ 233 (627)
+++++.++.+|++.|+|+- .- ..+|++|+..||+|.
T Consensus 63 ~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~ 103 (116)
T CHL00041 63 ENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLS 103 (116)
T ss_pred HHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEE
Confidence 3445666778999988883 22 478999999999865
No 137
>PRK07198 hypothetical protein; Validated
Probab=27.61 E-value=53 Score=36.81 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=32.8
Q ss_pred HHHHHhCCCCEE-EEecCChHHHHHHHhcCCEEEEeeC
Q 045344 201 VQMLKDNGIKRA-KLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 201 v~lLks~~i~~V-RlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
+|+|+.+||++| ||....+.-+.+|.+.||+|.=-|+
T Consensus 338 AQILrdLGV~Km~RLLTNnp~K~~gL~GfGLEVVErVp 375 (418)
T PRK07198 338 PDVLHWLGIRRIHRLVSMSNMKYDAITGSGIEVGERVP 375 (418)
T ss_pred HHHHHHhCCChhhhhcCCCHHHHHHHHhCCCEEEEEec
Confidence 578999999999 9999999899999999999975554
No 138
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=27.41 E-value=6e+02 Score=29.01 Aligned_cols=43 Identities=21% Similarity=0.237 Sum_probs=27.8
Q ss_pred CCHHHHHHHH----HhCCCCEEEEecCC----h----HHHHHHHhcC-CEEEEeeC
Q 045344 195 LPAKIIVQML----KDNGIKRAKLFDAD----E----TSVKELAHTG-IEVMVAIP 237 (627)
Q Consensus 195 psp~~Vv~lL----ks~~i~~VRlYdaD----~----~VL~Ala~tg-IkV~VGV~ 237 (627)
-++++|++.| +..++..+-+.|-+ . ++++++...+ +++..++.
T Consensus 222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~ 277 (497)
T TIGR02026 222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRKKFQEFCEEIIARNPISVTWGIN 277 (497)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 3577777644 44688888887653 2 5677777776 66655543
No 139
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.23 E-value=8e+02 Score=26.33 Aligned_cols=125 Identities=11% Similarity=0.111 Sum_probs=73.7
Q ss_pred cCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccCCC-CCCCc------------cccccccCCcc------cc
Q 045344 326 TLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLYES-PDFPV------------EYAFFEEGAKG------LQ 386 (627)
Q Consensus 326 ~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~~~-~~i~l------------dyAlF~~~~~~------v~ 386 (627)
+|...+.+.++..+.++.++|-+.+.++.+++-++. .+... +..++ ......++... +.
T Consensus 64 ~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL~H--~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ps~~~~~~~~~~p 141 (336)
T cd02932 64 TPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQLAH--AGRKASTAPPWEGGGPLLPPGGGGWQVVAPSAIPFDEGWPTP 141 (336)
T ss_pred CCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEccC--CCcCCCCCCCccccccccccccCCCceeCCCCCcCCCCCCCC
Confidence 555556777777789999999999999998888643 11111 11100 00001111000 00
Q ss_pred c--CCccchhhhhhhHHHHHHHHHHhCCCCceEEEceec------cCCC---CC-CCCCHHHHHHHHHHHHHHHHhcCC
Q 045344 387 D--KNHRYTNVLDGNYDTLLSALKKAGYPDMKIIIGEIG------WPTD---GH-KAATSQSAQKFYDGLFKKLAKRDG 453 (627)
Q Consensus 387 D--~g~~YtNlfDaqvDav~~Am~k~g~~~~~VvItETG------WPS~---G~-~~AS~~NA~~y~~nli~~~~s~~G 453 (627)
. +--.-..+.+..+++...|. ++||.+++|..+.-. .|.. .+ -+.+++|-.+|...+++.+++..|
T Consensus 142 ~~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG 219 (336)
T cd02932 142 RELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWP 219 (336)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcC
Confidence 0 00011345666666665554 479999999876522 2422 22 258999999999999999987654
No 140
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=26.73 E-value=4e+02 Score=28.19 Aligned_cols=60 Identities=10% Similarity=0.139 Sum_probs=35.5
Q ss_pred hhhhhchHHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCC
Q 045344 242 FDMAVDYSNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGH 308 (627)
Q Consensus 242 ~~la~s~~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl 308 (627)
..+.++++.-++++++.| .++. .-.+.+|.+==|.+.. .....++..|+.++++|++.++
T Consensus 80 ~~~l~~~~~R~~fi~~iv-~~~~--~~~~dGidiD~E~~~~----~d~~~~~~fl~eL~~~l~~~~~ 139 (298)
T cd06549 80 ARLLADPSARAKFIANIA-AYLE--RNQADGIVLDFEELPA----DDLPKYVAFLSELRRRLPAQGK 139 (298)
T ss_pred HHHhcCHHHHHHHHHHHH-HHHH--HhCCCCEEEecCCCCh----hHHHHHHHHHHHHHHHhhhcCc
Confidence 455566554444544432 2221 1235667776675432 2255688899999999998765
No 141
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=26.68 E-value=6.7e+02 Score=26.20 Aligned_cols=149 Identities=15% Similarity=0.217 Sum_probs=0.0
Q ss_pred hHHHHHHHh--cCCEEEEeeCCChh--hhhhhchHHHHHH-------HHHhhcccccCCCceEEEEEecccccccCCCcc
Q 045344 219 ETSVKELAH--TGIEVMVAIPNGML--FDMAVDYSNAQNW-------VKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDS 287 (627)
Q Consensus 219 ~~VL~Ala~--tgIkV~VGV~n~~l--~~la~s~~~A~~W-------v~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~ 287 (627)
+.-+.+|+. .++||||+|.-... .....++....+| +.+-|..| .+.+|=+==|-....
T Consensus 58 ~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~~~~~~~~~~fv~S~~~~l~~~------~fDGiDiDwE~~~~d---- 127 (253)
T cd06544 58 PEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDPSNVDSWVSNAVSSLTSIIQTY------NLDGIDIDYEHFPAD---- 127 (253)
T ss_pred HHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCchhhhhHHHHHHHHHHHHHHHh------CCCceeeecccCCcC----
Q ss_pred chhhHHHHHHHHHHHHHHcCCCcceEEeccccc-ccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccccC
Q 045344 288 FVKDTFPALKNVQQALVEAGHGKMVKATVPLNA-DVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSLY 366 (627)
Q Consensus 288 ~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~-~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~~ 366 (627)
....+..|+.++++|++.++--.+.|...... ....- +.+.++++|+ +.+.+..|-++...
T Consensus 128 -~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~~~~y~-------------~~~~~~~d~i----d~~~~qfy~~~~~~ 189 (253)
T cd06544 128 -PDTFVECIGQLITELKNNGVIKVASIAPSEDAEQSHYL-------------ALYNAYGDYI----DYVNYQFYNYGVPT 189 (253)
T ss_pred -HHHHHHHHHHHHHHhhhcCCeEEEEecCCccccccccH-------------HHHHHhhCce----eEEEhhhhCCCCCC
Q ss_pred CCCCCCccccccccCCcccccCCccchhhhhhhHHHHHHHHHHh--CCCCceEEEceeccCCCCCC
Q 045344 367 ESPDFPVEYAFFEEGAKGLQDKNHRYTNVLDGNYDTLLSALKKA--GYPDMKIIIGEIGWPTDGHK 430 (627)
Q Consensus 367 ~~~~i~ldyAlF~~~~~~v~D~g~~YtNlfDaqvDav~~Am~k~--g~~~~~VvItETGWPS~G~~ 430 (627)
-.+....+.++. +++..+|+| |.|+.+..
T Consensus 190 --------------------------------~~~~~~~~~~~~~~~~p~~Kv~l---Gl~a~~~~ 220 (253)
T cd06544 190 --------------------------------TVAKYVEFYDEVANNYPGKKVLA---SFSTDGED 220 (253)
T ss_pred --------------------------------CHHHHHHHHHHHHhCCCcccEEE---EEecCCCc
No 142
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=26.60 E-value=2.6e+02 Score=30.52 Aligned_cols=19 Identities=16% Similarity=0.048 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q 045344 291 DTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 291 ~Llpam~nI~~aL~~agl~ 309 (627)
.+......+++.|+++|+.
T Consensus 221 ~~~~~~~~~~~~l~~~G~~ 239 (375)
T PRK05628 221 VLADRYELADARLSAAGFD 239 (375)
T ss_pred HHHHHHHHHHHHHHHcCCC
Confidence 3556667788899999985
No 143
>KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism]
Probab=26.44 E-value=3.9e+02 Score=31.11 Aligned_cols=117 Identities=15% Similarity=0.121 Sum_probs=64.8
Q ss_pred CCCHHHHHHHHHhCCCCEEEEe------cCChHHHHHHHh---------cCCEEEEeeCCChhhhhhhch----------
Q 045344 194 PLPAKIIVQMLKDNGIKRAKLF------DADETSVKELAH---------TGIEVMVAIPNGMLFDMAVDY---------- 248 (627)
Q Consensus 194 lpsp~~Vv~lLks~~i~~VRlY------daD~~VL~Ala~---------tgIkV~VGV~n~~l~~la~s~---------- 248 (627)
||-..+|++.|++.|-+.|.|= |...+.|+|+++ .+++|+|.-+-.+++.-+.+.
T Consensus 186 LPvY~Evi~kL~sAGA~~iQiDEPilvmDL~~~~l~a~k~AY~~l~~~~~~~~v~l~TYF~~v~~~a~~~lk~L~~v~~~ 265 (765)
T KOG2263|consen 186 LPVYKEVIAKLKSAGATWIQIDEPILVMDLPGEKLQAFKGAYAELESTLSGLNVLLATYFADVPAEAYKTLKSLKGVTAF 265 (765)
T ss_pred hHHHHHHHHHHHhcCCeEEEcCCceEEeeCcHHHHHHHHHHHHHHHhhccccceeehhhhccCCHHHHHHHhCCcceeee
Confidence 3446678888888888877763 445688888874 577888876543332221100
Q ss_pred ----HHHHHHHHHhhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEEeccccc
Q 045344 249 ----SNAQNWVKENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNA 320 (627)
Q Consensus 249 ----~~A~~Wv~~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~ 320 (627)
-.+-.-+ +.|..-+|.+.....+|+=|--+. ...+-.++..++++....|-+ +|.|+|+.+.
T Consensus 266 ~~D~VR~~e~l-D~~~a~~~~~k~l~~GvVdGRNIW--------~nDf~~s~a~l~k~~~~vG~d-kvvVstS~Sl 331 (765)
T KOG2263|consen 266 GFDLVRGPETL-DLVKAGFPEGKYLFAGVVDGRNIW--------ANDFAASLATLQKLEGIVGKD-KVVVSTSCSL 331 (765)
T ss_pred eeeeeechhhH-HHHHhcCCCCceEEEEEeccchhh--------hhhHHHHHHHHHHHHHhhccc-eEEEeechhh
Confidence 0011111 112222343333344444443322 334566677788888778875 4888888763
No 144
>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a
Probab=26.38 E-value=3.5e+02 Score=26.74 Aligned_cols=35 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred HHHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCEE
Q 045344 198 KIIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIEV 232 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIkV 232 (627)
..+++.|...|..+|=+....+ ..+++++..++++
T Consensus 106 ~~~~~~l~~~G~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~ 150 (269)
T cd06275 106 YLATRHLIELGHRRIGCITGPLEKAPAQQRLAGFRRAMAEAGLPV 150 (269)
T ss_pred HHHHHHHHHCCCceEEEEeCCCCCccHHHHHHHHHHHHHHcCCCC
Confidence 3445666666777776664321 2456677777764
No 145
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=26.32 E-value=4.2e+02 Score=25.99 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCEEEEec
Q 045344 197 AKIIVQMLKDNGIKRAKLFD 216 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYd 216 (627)
...+++.|.+.|.++|-+..
T Consensus 104 g~~~~~~l~~~g~~~i~~l~ 123 (267)
T cd06283 104 AKEAVDHLIEKGYERILFVT 123 (267)
T ss_pred HHHHHHHHHHcCCCcEEEEe
Confidence 34556667677888877773
No 146
>PRK09319 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II/unknown domain fusion protein; Provisional
Probab=26.27 E-value=1e+02 Score=36.00 Aligned_cols=38 Identities=34% Similarity=0.544 Sum_probs=33.8
Q ss_pred HHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 200 IVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
.+++|+..||++|||..-.|.-+.+|++.||+|.=-||
T Consensus 342 gAQIL~dLGI~kIrLLTNNP~Ki~~L~~~GIeVv~rvp 379 (555)
T PRK09319 342 GAQILNDLGIKRLRLITNNPRKIAGLGGYGLEVVDRVP 379 (555)
T ss_pred HHHHHHHcCCCEEEECCCCHHHHHHHHhCCCEEEEEec
Confidence 46899999999999999999999999999999985554
No 147
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=26.23 E-value=1.8e+02 Score=33.09 Aligned_cols=48 Identities=8% Similarity=0.104 Sum_probs=36.1
Q ss_pred CHHHHHHHHHhCCCCEEEEec------------CC-------hHHHHHHHhcCCEEEEeeCCChhhh
Q 045344 196 PAKIIVQMLKDNGIKRAKLFD------------AD-------ETSVKELAHTGIEVMVAIPNGMLFD 243 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYd------------aD-------~~VL~Ala~tgIkV~VGV~n~~l~~ 243 (627)
..++.++||+++|++..|+=- .+ ..+|.+|.+.||+-+|.+.--+++.
T Consensus 54 ry~eDi~L~~~lG~~~yRfSIsWsRI~P~g~~~~N~~gl~~Y~~lid~l~~~GI~P~VTL~H~dlP~ 120 (467)
T TIGR01233 54 KYPVDLELAEEYGVNGIRISIAWSRIFPTGYGEVNEKGVEFYHKLFAECHKRHVEPFVTLHHFDTPE 120 (467)
T ss_pred hHHHHHHHHHHcCCCEEEEecchhhccCCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEeccCCCCcH
Confidence 357778999999888777631 12 1688999999999999998655543
No 148
>PRK10401 DNA-binding transcriptional regulator GalS; Provisional
Probab=26.09 E-value=6.4e+02 Score=26.33 Aligned_cols=34 Identities=24% Similarity=0.394 Sum_probs=20.9
Q ss_pred HHHHHHHHhCCCCEEEEecCC----------hHHHHHHHhcCCE
Q 045344 198 KIIVQMLKDNGIKRAKLFDAD----------ETSVKELAHTGIE 231 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD----------~~VL~Ala~tgIk 231 (627)
.++++.|.++|-++|=+.... ....+++++.|++
T Consensus 165 ~~a~~~L~~~G~~~I~~i~~~~~~~~~~~R~~Gf~~al~~~gi~ 208 (346)
T PRK10401 165 RMATRMLLNNGHQRIGYLSSSHGIEDDAMRRAGWMSALKEQGII 208 (346)
T ss_pred HHHHHHHHHCCCCeEEEEeCCCcCcchHHHHHHHHHHHHHcCCC
Confidence 455676777787777766322 1234677778875
No 149
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=25.99 E-value=1.7e+02 Score=30.49 Aligned_cols=54 Identities=20% Similarity=0.270 Sum_probs=34.8
Q ss_pred HHHHHHHhCCCCEEEEecCC---hHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHH
Q 045344 199 IIVQMLKDNGIKRAKLFDAD---ETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVK 256 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYdaD---~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~ 256 (627)
+-+++|.+.++..+||=+.| ...|+.++.+|..|+|......+.++ ..|.++++
T Consensus 80 ~s~d~l~~~~~~~~KIaS~dl~n~~lL~~~A~tgkPvIlSTG~stl~EI----~~Av~~~~ 136 (241)
T PF03102_consen 80 ESVDFLEELGVPAYKIASGDLTNLPLLEYIAKTGKPVILSTGMSTLEEI----ERAVEVLR 136 (241)
T ss_dssp HHHHHHHHHT-SEEEE-GGGTT-HHHHHHHHTT-S-EEEE-TT--HHHH----HHHHHHHH
T ss_pred HHHHHHHHcCCCEEEeccccccCHHHHHHHHHhCCcEEEECCCCCHHHH----HHHHHHHH
Confidence 44667777788888887665 47899999999999999987655544 45556663
No 150
>PRK14333 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.80 E-value=7.4e+02 Score=27.86 Aligned_cols=59 Identities=8% Similarity=0.049 Sum_probs=33.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLSL 365 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~~ 365 (627)
.++.+.+++.+|+++ ..+.|++.. +..|| .+-.+.+...++||.+.+ +-.+++++|--.
T Consensus 289 ~e~~~~~i~~lr~~~------p~i~i~~d~----IvGfP-------gET~edf~~tl~~l~~~~-~~~~~~~~~sp~ 347 (448)
T PRK14333 289 HEKYRRIIDKIREYM------PDASISADA----IVGFP-------GETEAQFENTLKLVEEIG-FDQLNTAAYSPR 347 (448)
T ss_pred HHHHHHHHHHHHHhC------CCcEEEeeE----EEECC-------CCCHHHHHHHHHHHHHcC-CCEEeeeeeecC
Confidence 455666777776542 125555443 32233 122356778889987654 334677776543
No 151
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=25.45 E-value=6.6e+02 Score=24.73 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCEE
Q 045344 199 IIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIEV 232 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIkV 232 (627)
.+++.|.++|.++|-++...+ ..+++++..++++
T Consensus 107 ~a~~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~~ 150 (270)
T cd06296 107 AATEHLLELGHRRIGFITGPPDLLCSRARLDGYRAALAEAGIPV 150 (270)
T ss_pred HHHHHHHHcCCCcEEEEcCCCcchhHHHHHHHHHHHHHHcCCCC
Confidence 344555556778777774321 2345666677653
No 152
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=25.23 E-value=6.3e+02 Score=28.22 Aligned_cols=21 Identities=19% Similarity=0.518 Sum_probs=10.4
Q ss_pred CCCEEEEecCC-----hHHHHHHHhc
Q 045344 208 GIKRAKLFDAD-----ETSVKELAHT 228 (627)
Q Consensus 208 ~i~~VRlYdaD-----~~VL~Ala~t 228 (627)
++.+||+.... +++|++++..
T Consensus 205 ~~~~ir~~~~~p~~i~~ell~~l~~~ 230 (418)
T PRK14336 205 GLLRIRFLTSHPKDISQKLIDAMAHL 230 (418)
T ss_pred CccEEEEeccChhhcCHHHHHHHHhc
Confidence 34456654322 3455555553
No 153
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=25.20 E-value=1.9e+02 Score=27.18 Aligned_cols=44 Identities=20% Similarity=0.206 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCC-------hHHHHHHHhc---CCEEEEe--eCC
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDAD-------ETSVKELAHT---GIEVMVA--IPN 238 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYdaD-------~~VL~Ala~t---gIkV~VG--V~n 238 (627)
-+++++++..++.+.+.|=|=..+ +.++++|+.. .++|++| ++.
T Consensus 40 ~s~e~~v~aa~e~~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~ 95 (132)
T TIGR00640 40 QTPEEIARQAVEADVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPP 95 (132)
T ss_pred CCHHHHHHHHHHcCCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCCh
Confidence 456777777776666666665544 3566777665 4577777 553
No 154
>PLN03059 beta-galactosidase; Provisional
Probab=25.06 E-value=6.8e+02 Score=31.02 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=70.8
Q ss_pred HHHHHHHhCCCCEEEEecC-----------C-------hHHHHHHHhcCCEEEEeeCCC-------------h--hhh--
Q 045344 199 IIVQMLKDNGIKRAKLFDA-----------D-------ETSVKELAHTGIEVMVAIPNG-------------M--LFD-- 243 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYda-----------D-------~~VL~Ala~tgIkV~VGV~n~-------------~--l~~-- 243 (627)
+.++.+|+.|+..|-+|-. | ..-|+.+++.||.|+|=.... . .+.
T Consensus 63 d~L~k~Ka~GlNtV~tYV~Wn~HEp~~G~~dF~G~~DL~~Fl~la~e~GLyvilRpGPYIcAEw~~GGlP~WL~~~~~i~ 142 (840)
T PLN03059 63 DLIQKAKDGGLDVIQTYVFWNGHEPSPGNYYFEDRYDLVKFIKVVQAAGLYVHLRIGPYICAEWNFGGFPVWLKYVPGIE 142 (840)
T ss_pred HHHHHHHHcCCCeEEEEecccccCCCCCeeeccchHHHHHHHHHHHHcCCEEEecCCcceeeeecCCCCchhhhcCCCcc
Confidence 4556678899999999942 1 246788889999999855321 0 011
Q ss_pred hhh-c---hHHHHHHHHHhhcc-----cccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCCcceEE
Q 045344 244 MAV-D---YSNAQNWVKENVTR-----WVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHGKMVKA 314 (627)
Q Consensus 244 la~-s---~~~A~~Wv~~nV~~-----y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~~~IkV 314 (627)
+-+ + .++.++|+..-+.. ++-..+..|..+=|-||. ..+.......-..+|+.++++++++|+. |+.
T Consensus 143 ~Rs~d~~fl~~v~~~~~~l~~~l~~~~l~~~~GGPIImvQIENEY--Gs~~~~~~~~d~~Yl~~l~~~~~~~Gi~--VPl 218 (840)
T PLN03059 143 FRTDNGPFKAAMQKFTEKIVDMMKSEKLFEPQGGPIILSQIENEY--GPVEWEIGAPGKAYTKWAADMAVKLGTG--VPW 218 (840)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhhcceeecCCCcEEEEEecccc--cceecccCcchHHHHHHHHHHHHHcCCC--cce
Confidence 111 1 24566777654322 211234578889999994 2221111122357899999999999984 666
Q ss_pred ecccc
Q 045344 315 TVPLN 319 (627)
Q Consensus 315 sT~~s 319 (627)
-|.+.
T Consensus 219 ~t~dg 223 (840)
T PLN03059 219 VMCKQ 223 (840)
T ss_pred EECCC
Confidence 55543
No 155
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=24.86 E-value=6.2e+02 Score=28.13 Aligned_cols=25 Identities=8% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHHHHHHHhhhcCCCceeccCcccc
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLS 364 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~ 364 (627)
+.+...++||.+.+ +-.+++|||--
T Consensus 306 ed~~~tl~~i~~~~-~~~~~~~~~sp 330 (429)
T TIGR00089 306 EDFEETLDLVEEVK-FDKLHSFIYSP 330 (429)
T ss_pred HHHHHHHHHHHhcC-CCEeeccccCC
Confidence 56778889997654 44567777643
No 156
>COG0807 RibA GTP cyclohydrolase II [Coenzyme metabolism]
Probab=24.73 E-value=1.3e+02 Score=30.58 Aligned_cols=38 Identities=34% Similarity=0.546 Sum_probs=34.1
Q ss_pred HHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeCC
Q 045344 201 VQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPN 238 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~n 238 (627)
+++|+..||++|||-...|.-+.++.+.||+|.=-|+.
T Consensus 133 AqIL~dLGI~~irLLtnnp~K~~~l~~~Gi~vverv~~ 170 (193)
T COG0807 133 AQILKDLGIKKIRLLTNNPRKIYGLEGFGINVVERVPL 170 (193)
T ss_pred HHHHHHcCCcEEEEecCChHHHHHHHhCCceEEEEeec
Confidence 57889999999999999998899999999999887874
No 157
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=24.65 E-value=5e+02 Score=27.62 Aligned_cols=26 Identities=19% Similarity=0.371 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhcCCCceeccCcccc
Q 045344 339 QHIDNILKNLHDNKSPFIVNIYPFLS 364 (627)
Q Consensus 339 ~~l~~lldFL~~t~sp~~vNiYPff~ 364 (627)
+-++.+++-|++.+--+++.+.||+.
T Consensus 70 Pdp~~mi~~l~~~G~k~~l~i~P~i~ 95 (303)
T cd06592 70 PDPKGMIDQLHDLGFRVTLWVHPFIN 95 (303)
T ss_pred CCHHHHHHHHHHCCCeEEEEECCeeC
Confidence 44788999999999999999999875
No 158
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=24.56 E-value=7.7e+02 Score=25.22 Aligned_cols=38 Identities=18% Similarity=0.134 Sum_probs=28.7
Q ss_pred CHHHHHHHHHhCCCCEEEEecC-----------Ch----HHHHHHHhcCCEEE
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDA-----------DE----TSVKELAHTGIEVM 233 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYda-----------D~----~VL~Ala~tgIkV~ 233 (627)
+.++.+++++..|++.|-|.-. ++ .+.++++++||+|.
T Consensus 22 ~~~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~~gl~i~ 74 (283)
T PRK13209 22 CWLEKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVETGFRVN 74 (283)
T ss_pred CHHHHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHHcCCcee
Confidence 5788899999999999988621 22 34566778999985
No 159
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=24.39 E-value=2.6e+02 Score=28.56 Aligned_cols=70 Identities=20% Similarity=0.304 Sum_probs=48.5
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCCh---------HHHHHHH-hcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhccccc
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDADE---------TSVKELA-HTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVK 264 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYdaD~---------~VL~Ala-~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p 264 (627)
..|-++++.+...+++.+-+-|.|. .+|+.++ .++++|+||=.-. +.+.++.|+...
T Consensus 29 ~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~~~n~~~i~~i~~~~~~~i~vgGGIr-------s~ed~~~ll~~G------ 95 (229)
T PF00977_consen 29 GDPVEVAKAFNEQGADELHIVDLDAAKEGRGSNLELIKEIAKETGIPIQVGGGIR-------SIEDAERLLDAG------ 95 (229)
T ss_dssp CCHHHHHHHHHHTT-SEEEEEEHHHHCCTHHHHHHHHHHHHHHSSSEEEEESSE--------SHHHHHHHHHTT------
T ss_pred cCHHHHHHHHHHcCCCEEEEEEccCcccCchhHHHHHHHHHhcCCccEEEeCccC-------cHHHHHHHHHhC------
Confidence 4688999999899999999998762 4555544 5799999998732 334556665532
Q ss_pred CCCceEEEEEeccccccc
Q 045344 265 DGSVKLKYVAVGNEPFLK 282 (627)
Q Consensus 265 ~~~t~I~~I~VGNEvL~~ 282 (627)
+..|+||.|.+..
T Consensus 96 -----a~~Vvigt~~~~~ 108 (229)
T PF00977_consen 96 -----ADRVVIGTEALED 108 (229)
T ss_dssp ------SEEEESHHHHHC
T ss_pred -----CCEEEeChHHhhc
Confidence 3368999998753
No 160
>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=24.12 E-value=1e+03 Score=26.56 Aligned_cols=25 Identities=8% Similarity=0.034 Sum_probs=16.5
Q ss_pred hHHHHHHHHHhhhcCCCceeccCccc
Q 045344 338 KQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 338 ~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
.+.+...++|+.+.+ +-.+++|+|-
T Consensus 315 ~ed~~~tl~~i~~~~-~~~~~~~~~s 339 (444)
T PRK14325 315 DEDFEATMKLIEDVG-FDQSFSFIYS 339 (444)
T ss_pred HHHHHHHHHHHHhcC-CCeeeeeecc
Confidence 356788899998765 3345666654
No 161
>PRK05723 flavodoxin; Provisional
Probab=23.86 E-value=6.2e+02 Score=24.23 Aligned_cols=113 Identities=12% Similarity=0.109 Sum_probs=56.9
Q ss_pred cceeeeCCCCCC-CCCHHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeCCC---hhhhhhhchHHHHHHHHH
Q 045344 182 DVGVNWGNLASH-PLPAKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIPNG---MLFDMAVDYSNAQNWVKE 257 (627)
Q Consensus 182 ~iGVnYG~~~~n-lpsp~~Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~n~---~l~~la~s~~~A~~Wv~~ 257 (627)
.++|-||...-+ ---++++.+.|+..+++..-+...+..-|..+. .. .|+++++-. +++.-+ ..--+|+++
T Consensus 2 ~i~I~ygS~tG~ae~~A~~la~~l~~~g~~~~~~~~~~~~~~~~~~-~~-~li~~~sT~G~Ge~Pd~~---~~f~~~L~~ 76 (151)
T PRK05723 2 KVAILSGSVYGTAEEVARHAESLLKAAGFEAWHNPRASLQDLQAFA-PE-ALLAVTSTTGMGELPDNL---MPLYSAIRD 76 (151)
T ss_pred eEEEEEEcCchHHHHHHHHHHHHHHHCCCceeecCcCCHhHHHhCC-CC-eEEEEECCCCCCCCchhH---HHHHHHHHh
Confidence 367888875322 222344455666666654323333333332221 12 456666642 233221 122345554
Q ss_pred hhcccccCCCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCC
Q 045344 258 NVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 258 nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~ 309 (627)
.....++ ..++..+..|+-. + .+.--.+++.+.+.|++.|-.
T Consensus 77 ~~~~~l~--~~~~aVfGLGDs~-Y-------~~~Fc~a~~~ld~~L~~lGA~ 118 (151)
T PRK05723 77 QLPAAWR--GLPGAVIALGDSS-Y-------GDTFCGGGEQMRELFAELGVR 118 (151)
T ss_pred cCccCCC--CCEEEEEeEeCCc-c-------hHHHhHHHHHHHHHHHHCCCc
Confidence 3211332 3456666677652 2 234567889999999998853
No 162
>PRK07094 biotin synthase; Provisional
Probab=23.85 E-value=8.8e+02 Score=25.62 Aligned_cols=42 Identities=14% Similarity=0.306 Sum_probs=27.8
Q ss_pred CCHHHHHHHH---HhCCCCEEEEecCC---------hHHHHHHHh-cCCEEEEee
Q 045344 195 LPAKIIVQML---KDNGIKRAKLFDAD---------ETSVKELAH-TGIEVMVAI 236 (627)
Q Consensus 195 psp~~Vv~lL---ks~~i~~VRlYdaD---------~~VL~Ala~-tgIkV~VGV 236 (627)
.++++|++.+ +..|++.|-+-+-+ ..++++++. .++.+.+.+
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~~~l~i~~~~ 124 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKELDVAITLSL 124 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHccCCceEEEec
Confidence 3678887644 45789998887432 146777776 577776554
No 163
>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=23.79 E-value=1.1e+03 Score=26.66 Aligned_cols=138 Identities=9% Similarity=0.130 Sum_probs=67.2
Q ss_pred CCHHHHHHH---HHhCCCCEEEEecCC-------------hHHHHHHHh--cCCEEEEeeCCChhhhhhhchHHHHHHHH
Q 045344 195 LPAKIIVQM---LKDNGIKRAKLFDAD-------------ETSVKELAH--TGIEVMVAIPNGMLFDMAVDYSNAQNWVK 256 (627)
Q Consensus 195 psp~~Vv~l---Lks~~i~~VRlYdaD-------------~~VL~Ala~--tgIkV~VGV~n~~l~~la~s~~~A~~Wv~ 256 (627)
-++++|++. |...|++.|.+.+.| ..+|+++.. .+++|.++.... ..+.. +. .+.++
T Consensus 178 r~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~~~~l~~Ll~~l~~~~~~~rir~~~~~p--~~l~~--el-l~~~~ 252 (445)
T PRK14340 178 HPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEAGADFAGLLDAVSRAAPEMRIRFTTSHP--KDISE--SL-VRTIA 252 (445)
T ss_pred CCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCCCchHHHHHHHHhhcCCCcEEEEccCCh--hhcCH--HH-HHHHH
Confidence 346777654 345689999886443 256677654 244555554311 11211 11 11222
Q ss_pred HhhcccccCCCceEEEEEeccc----ccccCC-CccchhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCc
Q 045344 257 ENVTRWVKDGSVKLKYVAVGNE----PFLKSY-NDSFVKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDG 331 (627)
Q Consensus 257 ~nV~~y~p~~~t~I~~I~VGNE----vL~~~~-~~~~~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g 331 (627)
+ . | ..+..|.+|=| .+++.- .....++++.+++.+|+++ ..|.|+|..- ..||
T Consensus 253 ~----~-~---~g~~~l~iglQSgsd~vLk~m~R~~t~~~~~~~v~~lr~~~------pgi~i~td~I----vGfP---- 310 (445)
T PRK14340 253 A----R-P---NICNHIHLPVQSGSSRMLRRMNRGHTIEEYLEKIALIRSAI------PGVTLSTDLI----AGFC---- 310 (445)
T ss_pred h----C-C---CCCCeEEECCCcCCHHHHHhcCCCCCHHHHHHHHHHHHHhC------CCCEEeccEE----EECC----
Confidence 2 1 1 12234555433 333211 1223556666666666542 2256665542 2243
Q ss_pred cccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 332 VFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 332 ~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
.|..+.+...++||.+.+ +-.+++|+|-
T Consensus 311 ---gET~edf~~tl~~~~~~~-~~~~~~f~~s 338 (445)
T PRK14340 311 ---GETEEDHRATLSLMEEVR-FDSAFMFYYS 338 (445)
T ss_pred ---CCCHHHHHHHHHHHHhcC-CCEEeeEEec
Confidence 122356788899988765 3345666653
No 164
>PTZ00129 40S ribosomal protein S14; Provisional
Probab=23.57 E-value=1.7e+02 Score=28.54 Aligned_cols=37 Identities=16% Similarity=0.267 Sum_probs=28.4
Q ss_pred HHHHHHHHhCCCCEEEEec--------CC-----hHHHHHHHhcCCEEEE
Q 045344 198 KIIVQMLKDNGIKRAKLFD--------AD-----ETSVKELAHTGIEVMV 234 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYd--------aD-----~~VL~Ala~tgIkV~V 234 (627)
+++++.++.+||+.|+|+- -- ..+|++|+..||+|..
T Consensus 79 ~~~a~k~~~~Gi~~v~V~vr~~gg~~~kg~GpGr~~airaL~~~glkI~~ 128 (149)
T PTZ00129 79 QDVAARCKELGINALHIKLRATGGVRTKTPGPGAQAALRALARAGLKIGR 128 (149)
T ss_pred HHHHHHHHHcCCeEEEEEEEecCCCCCCCCCCCHHHHHHHHHHCCCEEEE
Confidence 4456677789999988886 22 3789999999999864
No 165
>PF13547 GTA_TIM: GTA TIM-barrel-like domain
Probab=23.37 E-value=47 Score=35.68 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=36.6
Q ss_pred ceEEEEEecccccc----cCCCccc--hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCc
Q 045344 268 VKLKYVAVGNEPFL----KSYNDSF--VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDG 331 (627)
Q Consensus 268 t~I~~I~VGNEvL~----~~~~~~~--~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g 331 (627)
..|..++||.|..- |...+.+ +..|+..+..||+.| +..+|||-+-.++.+..+.|.-|
T Consensus 18 ggVdaF~IGSEl~gLT~iR~~~~~fPaV~~l~~LAa~VR~il-----G~~~kitYAADWsEY~~~~p~dg 82 (299)
T PF13547_consen 18 GGVDAFCIGSELRGLTRIRDGAGSFPAVEALRALAADVRAIL-----GPGTKITYAADWSEYFGYQPADG 82 (299)
T ss_pred CCCcEEEEchhhhhheeecCCCCCCcHHHHHHHHHHHHHHHh-----CCCceEEEeccCHHhcCcCCCCC
Confidence 45789999999632 1111111 345666666666555 34589999988887766555444
No 166
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=23.32 E-value=6.1e+02 Score=28.21 Aligned_cols=108 Identities=13% Similarity=0.084 Sum_probs=60.2
Q ss_pred HHHHHHHHhCCCCEEEEecC----------Ch------------HHHHHHHhcCCEEEEeeCCC-------hh----hhh
Q 045344 198 KIIVQMLKDNGIKRAKLFDA----------DE------------TSVKELAHTGIEVMVAIPNG-------ML----FDM 244 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYda----------D~------------~VL~Ala~tgIkV~VGV~n~-------~l----~~l 244 (627)
++....+|+.||+.|||.-. +| ++++.+.+.||.|+|-+-.. +. ...
T Consensus 76 ~~~~~~ik~~G~n~VRiPi~~~~~~~~~~~~p~~~~~~~~~~ld~~I~~a~~~gi~V~iD~H~~~~~~~~~~~s~~~~~~ 155 (407)
T COG2730 76 EEDFDQIKSAGFNAVRIPIGYWALQATDGDNPYLIGLTQLKILDEAINWAKKLGIYVLIDLHGYPGGNNGHEHSGYTSDY 155 (407)
T ss_pred hhHHHHHHHcCCcEEEcccchhhhhccCCCCCCeecchHHHHHHHHHHHHHhcCeeEEEEecccCCCCCCcCcccccccc
Confidence 56677889999999999732 22 34566678999999986421 11 111
Q ss_pred hhchHHHHHHHH--HhhcccccCCCceEEEEEecccccccCCCccchhhHH-HHHHHHHHHHHHcC
Q 045344 245 AVDYSNAQNWVK--ENVTRWVKDGSVKLKYVAVGNEPFLKSYNDSFVKDTF-PALKNVQQALVEAG 307 (627)
Q Consensus 245 a~s~~~A~~Wv~--~nV~~y~p~~~t~I~~I~VGNEvL~~~~~~~~~~~Ll-pam~nI~~aL~~ag 307 (627)
....+..+++++ +.|...+. ....|.+|-+=||+..- .....+...+ +|...|+.++.+.-
T Consensus 156 ~~~~~~~~~~~~~w~~ia~~f~-~~~~VIg~~~~NEP~~~-~~~~~w~~~~~~A~~~v~~~i~~~~ 219 (407)
T COG2730 156 KEENENVEATIDIWKFIANRFK-NYDTVIGFELINEPNGI-VTSETWNGGDDEAYDVVRNAILSNA 219 (407)
T ss_pred cccchhHHHHHHHHHHHHHhcc-CCCceeeeeeecCCccc-CCccccccchHHHHHHHHhhhhhcC
Confidence 110000112221 22433333 24566677778999831 0112244444 88888876665554
No 167
>cd06288 PBP1_sucrose_transcription_regulator Ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of DNA-binding regulatory proteins specific to sucrose that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.12 E-value=3.7e+02 Score=26.43 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCE
Q 045344 197 AKIIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIE 231 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIk 231 (627)
..+.++.|...|.++|-+....+ ..+++++.++++
T Consensus 104 ~~~a~~~l~~~g~~~i~~l~~~~~~~~~~~R~~gf~~~~~~~~~~ 148 (269)
T cd06288 104 GYDATRHLLAAGHRRIAFINGEPWMLAAKDRLKGYRQALAEAGIP 148 (269)
T ss_pred HHHHHHHHHHcCCceEEEEeCCccchhHHHHHHHHHHHHHHcCCC
Confidence 34556666666888888874332 234566677765
No 168
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=22.97 E-value=1.2e+02 Score=27.72 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHHHHHhCCCCEEEEec--CC---hHHHHHHHhcCCEEEE
Q 045344 199 IIVQMLKDNGIKRAKLFD--AD---ETSVKELAHTGIEVMV 234 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYd--aD---~~VL~Ala~tgIkV~V 234 (627)
.+++.++.++++.|+|+- .- ..+|++|+.+||+|+.
T Consensus 51 ~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~ 91 (110)
T PF00411_consen 51 KIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVS 91 (110)
T ss_dssp HHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEE
Confidence 344566778999998883 32 3789999999998653
No 169
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.63 E-value=4.4e+02 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=13.4
Q ss_pred HHHHHHHHHhCCCCEEEEecC
Q 045344 197 AKIIVQMLKDNGIKRAKLFDA 217 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYda 217 (627)
..++++.|.++|.++|=++..
T Consensus 103 ~~~~~~~l~~~g~~~i~~i~~ 123 (265)
T cd06290 103 GYLATQHLIDLGHRRIAHITG 123 (265)
T ss_pred HHHHHHHHHHCCCCeEEEEeC
Confidence 345666666667777776643
No 170
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=22.54 E-value=7e+02 Score=28.07 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 045344 290 KDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 290 ~~Llpam~nI~~aL~~agl~ 309 (627)
+.....+..+...|.++|+.
T Consensus 262 ~~~~~~~~~~~~~L~~~Gy~ 281 (453)
T PRK09249 262 EEKLAILQQTIETLTEAGYQ 281 (453)
T ss_pred HHHHHHHHHHHHHHHHCCCE
Confidence 34555667788889999984
No 171
>PTZ00090 40S ribosomal protein S11; Provisional
Probab=22.49 E-value=1.6e+02 Score=30.58 Aligned_cols=37 Identities=22% Similarity=0.222 Sum_probs=28.2
Q ss_pred HHHHHHhCCCCEEEEecC----ChHHHHHHHhcCCEEEEee
Q 045344 200 IVQMLKDNGIKRAKLFDA----DETSVKELAHTGIEVMVAI 236 (627)
Q Consensus 200 Vv~lLks~~i~~VRlYda----D~~VL~Ala~tgIkV~VGV 236 (627)
+++.++.+|+..|+++-- -..+|+||+..||+|..=.
T Consensus 172 aakka~~~GIk~V~V~vKGpGgREtALRaL~~~GLkIt~I~ 212 (233)
T PTZ00090 172 IAKKCRRLGIFAVDIKFRRIMRVETVLQAFYANGLQVTQII 212 (233)
T ss_pred HHHHHHHcCCeEEEEEEeCCChHHHHHHHHHHCCCEEEEEE
Confidence 445566789999999843 2479999999999987544
No 172
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.34 E-value=3.8e+02 Score=30.86 Aligned_cols=54 Identities=13% Similarity=0.264 Sum_probs=30.3
Q ss_pred eeeeCCCCCCCCCHHHHHHHHHh----CCCCEEEEecC-----ChHHHHHHHhcC---CEEEEeeC
Q 045344 184 GVNWGNLASHPLPAKIIVQMLKD----NGIKRAKLFDA-----DETSVKELAHTG---IEVMVAIP 237 (627)
Q Consensus 184 GVnYG~~~~nlpsp~~Vv~lLks----~~i~~VRlYda-----D~~VL~Ala~tg---IkV~VGV~ 237 (627)
|.+.+.+|.++..+..+.+||+. .++.+||+-.. +.++|++++..+ ..|.|||-
T Consensus 210 d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g~~~~~l~lglQ 275 (502)
T PRK14326 210 GQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETPNVCPQLHMPLQ 275 (502)
T ss_pred eecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcCCcCCcEEeccC
Confidence 44444444444444444555543 24567776543 357888888776 45667764
No 173
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=22.30 E-value=2.3e+02 Score=28.43 Aligned_cols=67 Identities=22% Similarity=0.476 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCCCceEEEcee---ccCCCCCCCCCHHHHHHHHHHHHHHHHhc-CCCCCCCCCcccEEEEeeeccccc
Q 045344 400 YDTLLSALKKAGYPDMKIIIGEI---GWPTDGHKAATSQSAQKFYDGLFKKLAKR-DGTPLRPGTEFDVYLFGFLDEDAK 475 (627)
Q Consensus 400 vDav~~Am~k~g~~~~~VvItET---GWPS~G~~~AS~~NA~~y~~nli~~~~s~-~GTP~rPg~~ie~yiFelFDE~wK 475 (627)
+|.++.++.+. ++.|+|.=. ||...+.........+.++..+++.+... ++. | ....|++++|+-.
T Consensus 64 ld~~v~~a~~~---gi~vild~h~~~~w~~~~~~~~~~~~~~~~~~~~~~~la~~y~~~---~----~v~~~el~NEP~~ 133 (281)
T PF00150_consen 64 LDRIVDAAQAY---GIYVILDLHNAPGWANGGDGYGNNDTAQAWFKSFWRALAKRYKDN---P----PVVGWELWNEPNG 133 (281)
T ss_dssp HHHHHHHHHHT---T-EEEEEEEESTTCSSSTSTTTTHHHHHHHHHHHHHHHHHHHTTT---T----TTEEEESSSSGCS
T ss_pred HHHHHHHHHhC---CCeEEEEeccCccccccccccccchhhHHHHHhhhhhhccccCCC---C----cEEEEEecCCccc
Confidence 34444444454 466766544 48555555555555555555555555432 121 1 3568899999965
Q ss_pred c
Q 045344 476 S 476 (627)
Q Consensus 476 ~ 476 (627)
.
T Consensus 134 ~ 134 (281)
T PF00150_consen 134 G 134 (281)
T ss_dssp T
T ss_pred c
Confidence 3
No 174
>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=22.15 E-value=1.2e+03 Score=26.43 Aligned_cols=58 Identities=7% Similarity=0.130 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCcccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFLS 364 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff~ 364 (627)
.++.+.+++.+|+++ ..|.|+|.. +..||- |..+.+...++||.+.+ +-.+++|+|--
T Consensus 292 ~e~~~~~v~~ir~~~------pgi~i~~d~----IvGfPg-------ET~edf~~Tl~~i~~l~-~~~~~~~~~sp 349 (455)
T PRK14335 292 REHYLSLVGKLKASI------PNVALSTDI----LIGFPG-------ETEEDFEQTLDLMREVE-FDSAFMYHYNP 349 (455)
T ss_pred HHHHHHHHHHHHHhC------CCCEEEEEE----EEeCCC-------CCHHHHHHHHHHHHhcC-CCeEEEEEecC
Confidence 445555555555432 225555554 222431 22356788899987765 34567776543
No 175
>cd00854 NagA N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate. This is the first committed step in the biosynthetic pathway to amino-sugar-nucleotides, which is needed for cell wall peptidoglycan and teichoic acid biosynthesis. Deacetylation of N-acetylglucosamine is also important in lipopolysaccharide synthesis and cell wall recycling.
Probab=22.09 E-value=1.4e+02 Score=32.61 Aligned_cols=44 Identities=18% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCHHHHHHHHHhCCCCEEEEecCCh------HHHHHHHhcCCEEEEeeCC
Q 045344 194 PLPAKIIVQMLKDNGIKRAKLFDADE------TSVKELAHTGIEVMVAIPN 238 (627)
Q Consensus 194 lpsp~~Vv~lLks~~i~~VRlYdaD~------~VL~Ala~tgIkV~VGV~n 238 (627)
.|+++++.++++... ..||+|...| .+++.++..||.|.+|=..
T Consensus 145 ~~~~~~~~~~~~~~~-~~ik~~tlaPE~~~~~~~i~~~~~~gi~v~~GH~~ 194 (374)
T cd00854 145 APDPEELKKWLEAAG-GLIKLVTLAPELDGALELIRYLVERGIIVSIGHSD 194 (374)
T ss_pred CcCHHHHHHHHHhcC-CCEEEEEECCCCCChHHHHHHHHHCCeEEEeeCCc
Confidence 467788888887643 6788886543 5778888999999877543
No 176
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=22.09 E-value=7e+02 Score=24.39 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=10.4
Q ss_pred HHHHHHHhCCCCEEEEec
Q 045344 199 IIVQMLKDNGIKRAKLFD 216 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYd 216 (627)
++++.|.++|.++|=+..
T Consensus 106 ~~~~~l~~~g~~~i~~i~ 123 (268)
T cd01575 106 AMARHLLARGYRRIGFLG 123 (268)
T ss_pred HHHHHHHHCCCCcEEEec
Confidence 345556566666666553
No 177
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=22.06 E-value=3.5e+02 Score=27.60 Aligned_cols=68 Identities=26% Similarity=0.348 Sum_probs=46.7
Q ss_pred CHHHHHHHHHhCCCCEEEEecCCh--------HHHHHHH-hcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCC
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDADE--------TSVKELA-HTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDG 266 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYdaD~--------~VL~Ala-~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~ 266 (627)
.|.++++.+++.|++.+=+.|.|. .+|+.+. .++++|++|-.... .+.++.++.. +
T Consensus 36 dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-------~edv~~~l~~--------G 100 (233)
T cd04723 36 DPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-------LENAQEWLKR--------G 100 (233)
T ss_pred CHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-------HHHHHHHHHc--------C
Confidence 578899999988999999998863 4666664 56889999886422 2333444331 1
Q ss_pred CceEEEEEecccccc
Q 045344 267 SVKLKYVAVGNEPFL 281 (627)
Q Consensus 267 ~t~I~~I~VGNEvL~ 281 (627)
...|+||.|.+.
T Consensus 101 ---a~~viigt~~~~ 112 (233)
T cd04723 101 ---ASRVIVGTETLP 112 (233)
T ss_pred ---CCeEEEcceecc
Confidence 234788999864
No 178
>PRK12756 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=22.00 E-value=1.1e+03 Score=26.17 Aligned_cols=69 Identities=10% Similarity=0.215 Sum_probs=49.1
Q ss_pred chhhhhhhHHHHHHHHHHhCCCCceEEEceeccCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCCCCcccEEEE
Q 045344 392 YTNVLDGNYDTLLSALKKAGYPDMKIIIGEIGWPTDGHKAATSQSAQKFYDGLFKKLAKRDGTPLRPGTEFDVYLF 467 (627)
Q Consensus 392 YtNlfDaqvDav~~Am~k~g~~~~~VvItETGWPS~G~~~AS~~NA~~y~~nli~~~~s~~GTP~rPg~~ie~yiF 467 (627)
..|...+.|+.+..+|++.|.+ -+|+|. =|.|...-...+|....++++..+.. |-..--|..+|.||.
T Consensus 237 ~PNY~~~~v~~a~~~l~~~~l~-~~imVD----cSH~NS~K~~~~Q~~V~~~v~~qi~~--g~~~I~GvMiES~L~ 305 (348)
T PRK12756 237 KPNYHAEDIAAACDTLREFDLP-EHLVVD----FSHGNCQKQHRRQLDVAEDICQQIRN--GSTAIAGIMAESFLR 305 (348)
T ss_pred CCCCCHHHHHHHHHHHHHCCCC-CcEEEE----CCCcccCCCHHHHHHHHHHHHHHHHc--CCCeEEEEEEeeccc
Confidence 4666777888888999999876 568886 56677677788899999999888874 322223444555553
No 179
>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.98 E-value=3.6e+02 Score=28.02 Aligned_cols=69 Identities=13% Similarity=0.147 Sum_probs=47.9
Q ss_pred CCHHHHHHHHHhCCCCEEEEecCCh---------HHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccC
Q 045344 195 LPAKIIVQMLKDNGIKRAKLFDADE---------TSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKD 265 (627)
Q Consensus 195 psp~~Vv~lLks~~i~~VRlYdaD~---------~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~ 265 (627)
..|-++++.+++.+++.+=+.|.|. ++++.++..=++|.||=.-. +.+.++.|+..
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i~~i~~~~~~v~vGGGIr-------s~e~~~~~l~~-------- 94 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVLEKLSEFAEHIQIGGGIR-------SLDYAEKLRKL-------- 94 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHHHHHHhhcCcEEEecCCC-------CHHHHHHHHHC--------
Confidence 4688999999999999999999872 57777765336777765532 23455566542
Q ss_pred CCceEEEEEecccccc
Q 045344 266 GSVKLKYVAVGNEPFL 281 (627)
Q Consensus 266 ~~t~I~~I~VGNEvL~ 281 (627)
+ +..|+||.+.+.
T Consensus 95 G---a~rvvigT~a~~ 107 (241)
T PRK14114 95 G---YRRQIVSSKVLE 107 (241)
T ss_pred C---CCEEEECchhhC
Confidence 1 224789999875
No 180
>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase. This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.
Probab=21.65 E-value=4.7e+02 Score=29.64 Aligned_cols=26 Identities=15% Similarity=0.231 Sum_probs=15.7
Q ss_pred CCCHHHHHH---HHHh-CCCCEEEEecCCh
Q 045344 194 PLPAKIIVQ---MLKD-NGIKRAKLFDADE 219 (627)
Q Consensus 194 lpsp~~Vv~---lLks-~~i~~VRlYdaD~ 219 (627)
.++.+++.+ .|+. .+++.|.|=+-||
T Consensus 137 ~ls~eei~~~i~yI~~~p~I~~VlLSGGDP 166 (417)
T TIGR03820 137 IPSKEQILEGIEYIRNTPQIRDVLLSGGDP 166 (417)
T ss_pred cCCHHHHHHHHHHHHhcCCCCEEEEeCCcc
Confidence 344455444 4454 3678888887775
No 181
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=21.65 E-value=2e+02 Score=24.22 Aligned_cols=41 Identities=20% Similarity=0.274 Sum_probs=34.9
Q ss_pred HHHHHHHHHhCCCCEEEEecCChHHHHHHHhcCCEEEEeeC
Q 045344 197 AKIIVQMLKDNGIKRAKLFDADETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 197 p~~Vv~lLks~~i~~VRlYdaD~~VL~Ala~tgIkV~VGV~ 237 (627)
...++++|...+++.|=.-..-+..++.|+..||+|+.+..
T Consensus 42 ~~~~~~~l~~~~v~~li~~~iG~~~~~~L~~~gI~v~~~~~ 82 (94)
T PF02579_consen 42 GDKIAKFLAEEGVDVLICGGIGEGAFRALKEAGIKVYQGAG 82 (94)
T ss_dssp STHHHHHHHHTTESEEEESCSCHHHHHHHHHTTSEEEESTS
T ss_pred chhHHHHHHHcCCCEEEEeCCCHHHHHHHHHCCCEEEEcCC
Confidence 45678888888888888878888999999999999999943
No 182
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=21.42 E-value=3.3e+02 Score=30.52 Aligned_cols=20 Identities=20% Similarity=0.310 Sum_probs=14.6
Q ss_pred hhHHHHHHHHHHHHHHcCCC
Q 045344 290 KDTFPALKNVQQALVEAGHG 309 (627)
Q Consensus 290 ~~Llpam~nI~~aL~~agl~ 309 (627)
+..+...+.+++.|.++|+.
T Consensus 247 ~~~~~m~~~~~~~L~~~Gy~ 266 (430)
T PRK08208 247 DQRLSLYRLARDLLLEAGYT 266 (430)
T ss_pred HHHHHHHHHHHHHHHHcCCe
Confidence 44455666788889999984
No 183
>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=21.16 E-value=1e+03 Score=26.63 Aligned_cols=57 Identities=9% Similarity=0.109 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcceEEecccccccccccCCCCccccchhhHHHHHHHHHhhhcCCCceeccCccc
Q 045344 289 VKDTFPALKNVQQALVEAGHGKMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDNILKNLHDNKSPFIVNIYPFL 363 (627)
Q Consensus 289 ~~~Llpam~nI~~aL~~agl~~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~lldFL~~t~sp~~vNiYPff 363 (627)
..+++.+++.+|+++ ..|.|+|.. +..||= +-.+.+...++||.+.+ +-.+++++|-
T Consensus 258 ~~~~~~~i~~lr~~~------pgi~i~~d~----IvGfPG-------ET~edf~~tl~fi~~~~-~~~~~v~~ys 314 (418)
T PRK14336 258 NQQYRELVERLKTAM------PDISLQTDL----IVGFPS-------ETEEQFNQSYKLMADIG-YDAIHVAAYS 314 (418)
T ss_pred HHHHHHHHHHHHhhC------CCCEEEEEE----EEECCC-------CCHHHHHHHHHHHHhcC-CCEEEeeecC
Confidence 455666666666542 225555443 322431 22356778899987754 3346666654
No 184
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=21.03 E-value=4.5e+02 Score=24.37 Aligned_cols=46 Identities=9% Similarity=0.069 Sum_probs=35.7
Q ss_pred CCCCCHHHHHHHHHhCCCCEEEEecCC----------hHHHHHHHhcCCEEEEeeC
Q 045344 192 SHPLPAKIIVQMLKDNGIKRAKLFDAD----------ETSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 192 ~nlpsp~~Vv~lLks~~i~~VRlYdaD----------~~VL~Ala~tgIkV~VGV~ 237 (627)
-..|++.++++-|...|+++|.+-... +..+.+++...++|.+|-|
T Consensus 53 ~~~p~~~eaL~~l~~~G~~~V~V~Pl~l~~G~e~~di~~~v~~~~~~~~~i~~g~p 108 (127)
T cd03412 53 IEVDTPEEALAKLAADGYTEVIVQSLHIIPGEEYEKLKREVDAFKKGFKKIKLGRP 108 (127)
T ss_pred CCCCCHHHHHHHHHHCCCCEEEEEeCeeECcHHHHHHHHHHHHHhCCCceEEEccC
Confidence 457999999999988999999987543 3455666656778888877
No 185
>PRK06294 coproporphyrinogen III oxidase; Provisional
Probab=21.03 E-value=4.4e+02 Score=28.85 Aligned_cols=20 Identities=10% Similarity=0.024 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHcCCCc
Q 045344 291 DTFPALKNVQQALVEAGHGK 310 (627)
Q Consensus 291 ~Llpam~nI~~aL~~agl~~ 310 (627)
......+.+++.|+++|+..
T Consensus 216 ~~~~~~~~~~~~L~~~Gy~~ 235 (370)
T PRK06294 216 ILAEMSLAAEELLTSQGFTR 235 (370)
T ss_pred HHHHHHHHHHHHHHHcCCCe
Confidence 34455666889999999953
No 186
>COG2355 Zn-dependent dipeptidase, microsomal dipeptidase homolog [Amino acid transport and metabolism]
Probab=20.93 E-value=9.8e+02 Score=26.17 Aligned_cols=68 Identities=7% Similarity=-0.031 Sum_probs=38.7
Q ss_pred CCCCCCCCHHHHHHHHHh-C-----CCCEE-EEecCChHHHHHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHh
Q 045344 189 NLASHPLPAKIIVQMLKD-N-----GIKRA-KLFDADETSVKELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKEN 258 (627)
Q Consensus 189 ~~~~nlpsp~~Vv~lLks-~-----~i~~V-RlYdaD~~VL~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~n 258 (627)
..+...|++..+.+.|.+ . -.... ++-.+..++..|+++-.+.+++++-. ...+..+.+.-+.|-+..
T Consensus 47 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~gk~~~~l~~eg--a~~~~~dl~~L~~~~~~G 121 (313)
T COG2355 47 SVGEGFPTTNKSRDALGQQLKFIRILSELERRLVRTAADIRLALKEGKIGAVLHMEG--AEPLGDDLDKLELFHALG 121 (313)
T ss_pred ccCCCCCCchhHHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHhhcCceeEEEeccC--cccccccHHHHHHHHHhC
Confidence 445677777644433321 0 01122 34445567888889899999999864 334555555555554443
No 187
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=20.83 E-value=8.4e+02 Score=25.55 Aligned_cols=37 Identities=32% Similarity=0.412 Sum_probs=26.0
Q ss_pred HHHHHhCCCCEEEEecCCh------HHHHHHHhcCCEEEEeeC
Q 045344 201 VQMLKDNGIKRAKLFDADE------TSVKELAHTGIEVMVAIP 237 (627)
Q Consensus 201 v~lLks~~i~~VRlYdaD~------~VL~Ala~tgIkV~VGV~ 237 (627)
++.....+++.|||+..-. ..++.+++.|++|.+.+.
T Consensus 97 i~~~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~ 139 (275)
T cd07937 97 VEKAAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAIC 139 (275)
T ss_pred HHHHHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEE
Confidence 4444567899999997631 345666789999887663
No 188
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.74 E-value=6.9e+02 Score=24.61 Aligned_cols=126 Identities=10% Similarity=-0.027 Sum_probs=57.4
Q ss_pred HHHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCEE--EEeeCCChhhhhhhchHHHHHHHHHhhcccccC
Q 045344 198 KIIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIEV--MVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKD 265 (627)
Q Consensus 198 ~~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIkV--~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~ 265 (627)
..+++.|...|.++|=+....+ ...++++.+++++ .+-+..+ .+.+.+..++++.+..+-
T Consensus 105 ~~~~~~l~~~g~~~i~~i~~~~~~~~~~~R~~gf~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~l~~~~-- 176 (264)
T cd06274 105 AELTRELLAAPPEEVLFLGGLPELSPSRERLAGFRQALADAGLPVQPDWIYAEG------YSPESGYQLMAELLARLG-- 176 (264)
T ss_pred HHHHHHHHHCCCCcEEEEeCCCcccchHHHHHHHHHHHHHcCCCCCcceeecCC------CChHHHHHHHHHHHccCC--
Confidence 3445555556666666553321 2345666676542 1111110 112333444444443321
Q ss_pred CCceEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHcCCC--cceEEecccccccccccCCCCccccchhhHHHHH
Q 045344 266 GSVKLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEAGHG--KMVKATVPLNADVYEGTLPSDGVFRKDIKQHIDN 343 (627)
Q Consensus 266 ~~t~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~agl~--~~IkVsT~~s~~vl~~~pPS~g~F~~d~~~~l~~ 343 (627)
..+++|++.+..+. +.+| ++|++.|+. +.|.|..-+.........|...+++.+...+.+.
T Consensus 177 --~~~~ai~~~~d~~A-----------~g~~----~al~~~g~~ip~dv~v~g~d~~~~~~~~~~~ltti~~~~~~~g~~ 239 (264)
T cd06274 177 --RLPRALFTTSYTLL-----------EGVL----RFLRERPGLAPSDLRIATFDDHPLLDFLPFPVHSVPQDHEALAEA 239 (264)
T ss_pred --CCCcEEEEcChHHH-----------HHHH----HHHHHcCCCCCcceEEEEeCCHHHHHhcCCCceEEeCCHHHHHHH
Confidence 13567777765431 2333 355566653 4566654443332222334455565555444444
Q ss_pred HHHHh
Q 045344 344 ILKNL 348 (627)
Q Consensus 344 lldFL 348 (627)
+++.|
T Consensus 240 a~~~l 244 (264)
T cd06274 240 AFELA 244 (264)
T ss_pred HHHHH
Confidence 55544
No 189
>TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family. This subset of the radical-SAM family (pfam04055) includes a number of probable activating proteins acting on different enzymes all requiring an amino-acid-centered radical. The closest relatives to this family are the pyruvate-formate lyase activating enzyme (PflA, 1.97.1.4, TIGR02493) and the anaerobic ribonucleotide reductase activating enzyme (TIGR02491). Included within this subfamily are activators of hydroxyphenyl acetate decarboxylase (HdpA, ), benzylsuccinate synthase (BssD, ), gycerol dehydratase (DhaB2, ) as well as enzymes annotated in E. coli as activators of different isozymes of pyruvate-formate lyase (PFLC and PFLE) however, these appear to lack characterization and may activate enzymes with distinctive functions. Most of the sequence-level variability between these forms is concentrated within an N-terminal domain which follows a conserved group of three cysteines and contains a variable pattern of 0
Probab=20.72 E-value=9.6e+02 Score=24.91 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=18.4
Q ss_pred HHHHHHHHHhhhcCC-CceeccCcccc
Q 045344 339 QHIDNILKNLHDNKS-PFIVNIYPFLS 364 (627)
Q Consensus 339 ~~l~~lldFL~~t~s-p~~vNiYPff~ 364 (627)
+.|.++++|+.+.+. ...+++.||..
T Consensus 232 ~ei~~l~~~~~~~~~~v~~v~l~~~~~ 258 (295)
T TIGR02494 232 ENIEAIAAFLRKLEPGVDEIDLLPYHR 258 (295)
T ss_pred HHHHHHHHHHHHhccCCceEEecCCCc
Confidence 456778888887664 45678878765
No 190
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=20.58 E-value=5.2e+02 Score=26.48 Aligned_cols=69 Identities=14% Similarity=0.158 Sum_probs=47.7
Q ss_pred CHHHHHHHHHhCCCCEEEEecCCh--------HHHHHHH-hcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCC
Q 045344 196 PAKIIVQMLKDNGIKRAKLFDADE--------TSVKELA-HTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDG 266 (627)
Q Consensus 196 sp~~Vv~lLks~~i~~VRlYdaD~--------~VL~Ala-~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~ 266 (627)
.|.++++.+.+.|++.+=+.|.|. .+|+.++ ..+++|+||=.-. +.+.++.|+.. +
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~~~~~~pv~vgGGir-------s~edv~~~l~~--------G 97 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVVGKLDVKVELSGGIR-------DDESLEAALAT--------G 97 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHHHHcCCCEEEcCCCC-------CHHHHHHHHHC--------C
Confidence 688889989889999999999872 5777665 4689999876532 22344444431 1
Q ss_pred CceEEEEEeccccccc
Q 045344 267 SVKLKYVAVGNEPFLK 282 (627)
Q Consensus 267 ~t~I~~I~VGNEvL~~ 282 (627)
+..+++|.+.+..
T Consensus 98 ---a~kvviGs~~l~~ 110 (241)
T PRK14024 98 ---CARVNIGTAALEN 110 (241)
T ss_pred ---CCEEEECchHhCC
Confidence 2257889998753
No 191
>PRK14565 triosephosphate isomerase; Provisional
Probab=20.58 E-value=2.9e+02 Score=28.81 Aligned_cols=97 Identities=11% Similarity=0.194 Sum_probs=50.5
Q ss_pred HHHHHhCCCCE--------EEEecCChHHH----HHHHhcCCEEEEeeCCChhhhhhhchHHHHHHHHHhhcccccCCCc
Q 045344 201 VQMLKDNGIKR--------AKLFDADETSV----KELAHTGIEVMVAIPNGMLFDMAVDYSNAQNWVKENVTRWVKDGSV 268 (627)
Q Consensus 201 v~lLks~~i~~--------VRlYdaD~~VL----~Ala~tgIkV~VGV~n~~l~~la~s~~~A~~Wv~~nV~~y~p~~~t 268 (627)
.++||..|++. -++|.=...++ +++...||+++|-|..... .- +.....+.+.+.+...++.
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e-~r--~~~~~~~~~~~Ql~~~l~~--- 151 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLE-DR--ENGMTKDVLLEQCSNCLPK--- 151 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHH-HH--HccChHHHHHHHHHHHhcC---
Confidence 46788877733 33333222333 5667899999999995422 11 1122344455555444431
Q ss_pred eEEEEEecccccccCCCccchhhHHHHHHHHHHHHHHc
Q 045344 269 KLKYVAVGNEPFLKSYNDSFVKDTFPALKNVQQALVEA 306 (627)
Q Consensus 269 ~I~~I~VGNEvL~~~~~~~~~~~Llpam~nI~~aL~~a 306 (627)
+.-|+|-=|++.--..+. ..-...++.+++.+++.
T Consensus 152 -~~~ivIAYEPvWAIGtG~--~a~~e~i~~~~~~Ir~~ 186 (237)
T PRK14565 152 -HGEFIIAYEPVWAIGGST--IPSNDAIAEAFEIIRSY 186 (237)
T ss_pred -CCCEEEEECCHHHhCCCC--CCCHHHHHHHHHHHHHh
Confidence 123666666654311111 12244566777777764
No 192
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=20.32 E-value=6.9e+02 Score=26.12 Aligned_cols=36 Identities=11% Similarity=0.138 Sum_probs=23.1
Q ss_pred HHHhCCCCEEEEecCCh------HHHHHHHhcCCEEEEeeCC
Q 045344 203 MLKDNGIKRAKLFDADE------TSVKELAHTGIEVMVAIPN 238 (627)
Q Consensus 203 lLks~~i~~VRlYdaD~------~VL~Ala~tgIkV~VGV~n 238 (627)
.....+++.||++.... .+++.++..|++|.+++..
T Consensus 90 ~a~~~gv~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~ 131 (266)
T cd07944 90 PASGSVVDMIRVAFHKHEFDEALPLIKAIKEKGYEVFFNLMA 131 (266)
T ss_pred HHhcCCcCEEEEecccccHHHHHHHHHHHHHCCCeEEEEEEe
Confidence 33456788888885431 3445556788888877753
No 193
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=20.27 E-value=8.3e+02 Score=24.21 Aligned_cols=33 Identities=18% Similarity=0.333 Sum_probs=18.2
Q ss_pred HHHHHHHhCCCCEEEEecCCh----------HHHHHHHhcCCE
Q 045344 199 IIVQMLKDNGIKRAKLFDADE----------TSVKELAHTGIE 231 (627)
Q Consensus 199 ~Vv~lLks~~i~~VRlYdaD~----------~VL~Ala~tgIk 231 (627)
.+++.|...|..+|-+...+. ...++++..+++
T Consensus 115 ~~a~~l~~~g~~~i~~i~~~~~~~~~~~r~~gf~~~~~~~~~~ 157 (275)
T cd06295 115 LATEHLLARGRRRIAFLGGPQDMPEGEERLEGYREALAEAGLP 157 (275)
T ss_pred HHHHHHHHCCCCeEEEEcCCCCcchhHHHHHHHHHHHHHcCCC
Confidence 344555566777777664321 234566666643
Done!