BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045345
(445 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OZI|A Chain A, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
pdb|3OZI|B Chain B, Crystal Structure Of The Tir Domain From The Flax Disease
Resistance Protein L6
Length = 204
Score = 77.4 bits (189), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 57/95 (60%), Gaps = 3/95 (3%)
Query: 2 YAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRMN 61
YA S WCL EL EIV + + +++I PIFY V+P+ VR QT + +AF KH F +
Sbjct: 101 YADSKWCLMELAEIVRRQEEDP-RRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKF--D 157
Query: 62 IEKVQKWRDALKKVANVSGWELKDRSESEFIVDIV 96
+ +Q W+DALKKV ++ GW + + I D V
Sbjct: 158 GQTIQNWKDALKKVGDLKGWHIGKNDKQGAIADKV 192
>pdb|3JRN|A Chain A, Crystal Structure Of Tir Domain From Arabidopsis Thaliana
Length = 176
Score = 71.6 bits (174), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRM 60
NYA S+WCLDELV I++ + + PIFY VEP VR QT E F KH R
Sbjct: 73 NYAASSWCLDELVTIMDFEKKGS--ITVMPIFYGVEPNHVRWQTGVLAEQFKKHAS--RE 128
Query: 61 NIEKVQKWRDALKKVANVSG 80
+ EKV KWR AL A +SG
Sbjct: 129 DPEKVLKWRQALTNFAQLSG 148
>pdb|4IGG|A Chain A, Full-Length Human Alpha-Catenin Crystal Structure
pdb|4IGG|B Chain B, Full-Length Human Alpha-Catenin Crystal Structure
Length = 832
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 11/119 (9%)
Query: 303 ALKVLGSFLYGKTTKEWESAPKRLERE-----SENEILDILKISFDGLRETEKKIFLDIA 357
A K+L + + + T++ E+A + L + ENE +D ++ +DG+R+ K + + I
Sbjct: 494 ATKLLSNTVMPRFTEQVEAAVEALSSDPAQPMDENEFIDASRLVYDGIRDIRKAVLM-IR 552
Query: 358 CFYRGEDRDYVTKIIDYCDFDPVIGIRVLIDKSLIEISNGNRLRMHNLLQEMGQQIVKR 416
+D D+ T+ DFD V + + R M L QE +I ++
Sbjct: 553 TPEELDDSDFETE-----DFDVRSRTSVQTEDDQLIAGQSARAIMAQLPQEQKAKIAEQ 606
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 9/67 (13%)
Query: 309 SFLYGKTTKEWESAPKRLERESEN--EILDILKISFDGLRETEKKIFLDIACFYRGEDRD 366
F+ KT KE E A K+L +ESE +LD LK E E+ + +++ F R E +
Sbjct: 31 GFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLK------EERERGVTINL-TFMRFETKK 83
Query: 367 YVTKIID 373
Y IID
Sbjct: 84 YFFTIID 90
>pdb|1L7C|A Chain A, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|B Chain B, Alpha-Catenin Fragment, Residues 385-651
pdb|1L7C|C Chain C, Alpha-Catenin Fragment, Residues 385-651
Length = 269
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 11/88 (12%)
Query: 296 YSGGLPLALKVLGSFLYGKTTKEWESAPKRLERE-----SENEILDILKISFDGLRETEK 350
Y+ + A K+L + + + T++ E+A + L + ENE +D ++ +DG+R+ K
Sbjct: 186 YTEKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRK 245
Query: 351 KIFLDIACFYRGEDRDYVTKIIDYCDFD 378
+ L I +D D+ T+ DFD
Sbjct: 246 AV-LXIRTPEELDDSDFETE-----DFD 267
>pdb|2B4P|A Chain A, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4P|B Chain B, Structure Of The D223n Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 27 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 77
>pdb|3O3L|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
pdb|3O3L|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,3,4,5)tetrakisphosphate
Length = 340
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 33 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 83
>pdb|2B4O|A Chain A, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4O|B Chain B, Structure Of The R258k Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 334
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 27 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 77
>pdb|2PSZ|A Chain A, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|2PSZ|B Chain B, Structure Of The Ptp-like Phytase Expressed By Selenomonas
Ruminantium At Low Ionic Strength
pdb|3D1H|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1H|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 500 Mm
pdb|3D1O|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1O|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 300 Mm
pdb|3D1Q|A Chain A, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
pdb|3D1Q|B Chain B, Structure Of The Ptp-Like Phytase Expressed By Selenomonas
Ruminantium At An Ionic Strength Of 400 Mm
Length = 340
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 33 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 83
>pdb|1H6G|A Chain A, Alpha-Catenin M-Domain
pdb|1H6G|B Chain B, Alpha-Catenin M-Domain
Length = 256
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 34/63 (53%), Gaps = 5/63 (7%)
Query: 296 YSGGLPLALKVLGSFLYGKTTKEWESAPKRLERE-----SENEILDILKISFDGLRETEK 350
Y+ + A K+L + + + T++ E+A + L + ENE +D ++ +DG+R+ K
Sbjct: 192 YTEKVLEATKLLSNTVXPRFTEQVEAAVEALSSDPAQPXDENEFIDASRLVYDGIRDIRK 251
Query: 351 KIF 353
+
Sbjct: 252 AVL 254
>pdb|2PT0|A Chain A, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
pdb|2PT0|B Chain B, Structure Of Selenomonas Ruminantium Ptp-Like Phytase With
The Active Site Cysteine Oxidized To Cysteine-Sulfonic
Acid
Length = 340
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 33 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 83
>pdb|3MMJ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
pdb|3MMJ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
Hexakisphosphate
Length = 314
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 7 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 57
>pdb|2B4U|A Chain A, Structure Of The C252s Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
pdb|2B4U|B Chain B, Structure Of The C252s Mutant Of Selenomonas Ruminantium
Ptp-Like Phytase
Length = 335
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 28/60 (46%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYRGEDRD 366
+GS+ + +++E RL+ + + + + S D LR EKK LD A E D
Sbjct: 27 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAAYVPSREGXD 86
>pdb|3MOZ|A Chain A, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
pdb|3MOZ|B Chain B, Structure Of The Ptp-Like Phytase From Selenomonas
Ruminantium In Complex With Myo-Inositol
(1,2,3,5,6)pentakisphosphate
Length = 314
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 7 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 57
>pdb|1U26|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
pdb|1U26|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate
Length = 337
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 28 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 78
>pdb|1U24|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U24|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
pdb|1U25|A Chain A, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|B Chain B, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
pdb|1U25|C Chain C, Crystal Structure Of Selenomonas Ruminantium Phytase
Complexed With Persulfated Phytate In The C2221 Crystal
Form
Length = 337
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 307 LGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIA 357
+GS+ + +++E RL+ + + + + S D LR EKK LD A
Sbjct: 28 VGSYARAERPQDFEGFVWRLDNDGKEALPRNFRTSADALRAPEKKFHLDAA 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,652,320
Number of Sequences: 62578
Number of extensions: 496948
Number of successful extensions: 1235
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 22
length of query: 445
length of database: 14,973,337
effective HSP length: 102
effective length of query: 343
effective length of database: 8,590,381
effective search space: 2946500683
effective search space used: 2946500683
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)