Query 045345
Match_columns 445
No_of_seqs 410 out of 2642
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 12:19:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045345.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045345hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 3.8E-80 8.3E-85 680.4 40.0 432 1-444 76-531 (1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 2E-41 4.3E-46 356.7 24.3 295 117-417 161-498 (889)
3 PF00931 NB-ARC: NB-ARC domain 100.0 1.3E-37 2.9E-42 295.4 15.8 257 119-379 1-283 (287)
4 PLN03194 putative disease resi 99.9 2E-25 4.3E-30 188.5 5.6 83 1-102 91-176 (187)
5 PRK04841 transcriptional regul 99.7 3.3E-15 7.2E-20 163.9 25.6 287 109-418 9-336 (903)
6 PRK00411 cdc6 cell division co 99.5 1.1E-11 2.3E-16 123.1 24.2 274 111-395 27-358 (394)
7 PRK00080 ruvB Holliday junctio 99.5 1.3E-12 2.8E-17 126.1 15.3 275 111-400 22-315 (328)
8 COG3899 Predicted ATPase [Gene 99.5 2.8E-12 6E-17 136.9 18.9 300 115-417 1-389 (849)
9 TIGR00635 ruvB Holliday juncti 99.5 1.7E-12 3.7E-17 124.2 15.6 269 114-400 4-294 (305)
10 COG2909 MalT ATP-dependent tra 99.4 2.9E-11 6.3E-16 123.3 21.7 290 110-421 15-345 (894)
11 TIGR02928 orc1/cdc6 family rep 99.4 2.2E-10 4.8E-15 112.5 27.3 274 111-395 12-350 (365)
12 PF01637 Arch_ATPase: Archaeal 99.3 2.2E-11 4.7E-16 111.6 12.9 186 116-306 1-233 (234)
13 TIGR03015 pepcterm_ATPase puta 99.2 1E-09 2.2E-14 103.0 18.8 168 137-311 43-242 (269)
14 COG3903 Predicted ATPase [Gene 99.1 1.6E-10 3.4E-15 109.5 7.3 272 136-417 13-317 (414)
15 PRK13342 recombination factor 99.0 1.5E-08 3.3E-13 100.7 16.2 170 111-309 9-198 (413)
16 PF01582 TIR: TIR domain; Int 99.0 1.5E-10 3.2E-15 97.4 0.7 73 1-73 65-140 (141)
17 PTZ00112 origin recognition co 98.9 4.5E-08 9.7E-13 101.3 15.4 273 111-395 752-1086(1164)
18 COG2256 MGS1 ATPase related to 98.9 1.8E-08 3.8E-13 95.2 11.4 160 114-303 24-208 (436)
19 COG1474 CDC6 Cdc6-related prot 98.9 3.7E-07 7.9E-12 88.5 20.5 272 111-395 14-334 (366)
20 PF05729 NACHT: NACHT domain 98.9 1.6E-08 3.5E-13 87.3 9.9 131 138-276 1-163 (166)
21 PF13191 AAA_16: AAA ATPase do 98.8 1.9E-08 4.1E-13 88.6 8.8 50 115-164 1-51 (185)
22 PF05496 RuvB_N: Holliday junc 98.7 2.3E-07 5E-12 82.0 13.1 168 112-312 22-226 (233)
23 PRK06893 DNA replication initi 98.7 2.7E-07 5.8E-12 84.3 13.9 170 107-309 9-205 (229)
24 TIGR03420 DnaA_homol_Hda DnaA 98.7 2.7E-07 5.9E-12 84.1 13.2 166 111-310 12-204 (226)
25 PTZ00202 tuzin; Provisional 98.7 2.9E-07 6.3E-12 88.7 12.6 106 108-226 256-368 (550)
26 PRK12402 replication factor C 98.7 1.6E-06 3.4E-11 84.2 18.0 188 111-306 12-225 (337)
27 PF13401 AAA_22: AAA domain; P 98.7 7.9E-08 1.7E-12 79.6 7.6 90 137-231 4-99 (131)
28 PRK00440 rfc replication facto 98.7 2.2E-06 4.9E-11 82.4 18.7 173 111-305 14-201 (319)
29 PLN03025 replication factor C 98.6 4.3E-06 9.4E-11 80.4 19.9 173 110-304 9-197 (319)
30 PRK04195 replication factor C 98.6 2.1E-06 4.6E-11 87.2 18.0 171 111-308 11-203 (482)
31 PRK14949 DNA polymerase III su 98.6 2.7E-06 5.8E-11 89.5 18.4 187 111-306 13-219 (944)
32 PRK13341 recombination factor 98.6 3.8E-06 8.2E-11 88.4 19.5 165 111-305 25-215 (725)
33 PRK07003 DNA polymerase III su 98.6 6.4E-06 1.4E-10 85.2 20.1 185 111-307 13-221 (830)
34 PRK14963 DNA polymerase III su 98.6 7.3E-06 1.6E-10 83.0 20.5 179 111-304 11-214 (504)
35 PRK14961 DNA polymerase III su 98.5 1.3E-05 2.7E-10 78.5 20.8 178 111-304 13-217 (363)
36 PF14516 AAA_35: AAA-like doma 98.5 6.9E-05 1.5E-09 72.3 24.9 194 111-314 8-246 (331)
37 PRK12323 DNA polymerase III su 98.5 1.1E-05 2.4E-10 82.3 19.6 187 111-305 13-223 (700)
38 PRK14962 DNA polymerase III su 98.5 1.3E-05 2.8E-10 80.6 19.3 185 111-310 11-222 (472)
39 PRK07471 DNA polymerase III su 98.5 1.2E-05 2.5E-10 78.3 17.9 190 110-308 15-239 (365)
40 PRK08903 DnaA regulatory inact 98.5 4.4E-06 9.6E-11 76.2 14.0 168 107-311 11-203 (227)
41 PRK14956 DNA polymerase III su 98.4 9.9E-06 2.1E-10 80.4 17.2 182 111-303 15-218 (484)
42 TIGR01242 26Sp45 26S proteasom 98.4 1.7E-06 3.7E-11 84.8 11.7 163 111-301 119-328 (364)
43 smart00255 TIR Toll - interleu 98.4 4.9E-07 1.1E-11 75.8 6.8 74 1-77 65-139 (140)
44 cd00009 AAA The AAA+ (ATPases 98.4 1.1E-06 2.4E-11 73.7 9.1 54 117-172 1-54 (151)
45 PRK14964 DNA polymerase III su 98.4 3.1E-05 6.7E-10 77.7 20.1 181 111-304 10-214 (491)
46 PRK14960 DNA polymerase III su 98.4 2.1E-05 4.6E-10 80.4 19.0 183 111-305 12-217 (702)
47 PRK08727 hypothetical protein; 98.4 6.1E-06 1.3E-10 75.5 13.8 59 112-172 17-76 (233)
48 PRK08691 DNA polymerase III su 98.4 3.5E-05 7.5E-10 79.6 20.3 182 111-305 13-218 (709)
49 PRK09112 DNA polymerase III su 98.4 3.7E-06 8E-11 81.3 12.6 187 109-308 18-241 (351)
50 PRK08084 DNA replication initi 98.4 9.4E-06 2E-10 74.4 14.6 161 114-308 22-210 (235)
51 PRK05642 DNA replication initi 98.4 6.7E-06 1.5E-10 75.2 13.5 141 137-309 45-210 (234)
52 PRK14957 DNA polymerase III su 98.4 8.8E-06 1.9E-10 82.7 14.9 186 111-307 13-221 (546)
53 COG2255 RuvB Holliday junction 98.4 1.7E-05 3.7E-10 72.0 14.9 253 111-401 23-317 (332)
54 PRK06645 DNA polymerase III su 98.3 3.2E-05 7E-10 78.1 18.1 184 110-304 17-226 (507)
55 KOG2028 ATPase related to the 98.3 3.2E-06 6.9E-11 78.9 9.9 168 111-302 135-331 (554)
56 PRK14951 DNA polymerase III su 98.3 4.2E-05 9.1E-10 78.9 19.0 185 111-306 13-224 (618)
57 PRK14087 dnaA chromosomal repl 98.3 7.1E-06 1.5E-10 82.2 13.2 156 137-311 141-323 (450)
58 PRK14958 DNA polymerase III su 98.3 2.7E-05 5.8E-10 79.2 16.9 181 111-304 13-217 (509)
59 PRK03992 proteasome-activating 98.3 7.2E-06 1.6E-10 80.8 12.0 52 112-163 129-191 (389)
60 PRK07994 DNA polymerase III su 98.3 1.3E-05 2.8E-10 82.8 14.1 183 111-305 13-218 (647)
61 KOG2227 Pre-initiation complex 98.3 3E-05 6.5E-10 75.0 15.0 160 112-276 148-338 (529)
62 PF00308 Bac_DnaA: Bacterial d 98.3 2.3E-05 4.9E-10 70.9 13.6 171 114-307 8-208 (219)
63 TIGR02397 dnaX_nterm DNA polym 98.2 3.9E-05 8.5E-10 75.0 16.2 185 111-308 11-219 (355)
64 PRK05896 DNA polymerase III su 98.2 9E-05 2E-09 75.7 19.0 185 111-308 13-222 (605)
65 PRK14955 DNA polymerase III su 98.2 9.7E-05 2.1E-09 73.2 19.0 188 111-305 13-226 (397)
66 PRK14969 DNA polymerase III su 98.2 3.2E-05 7E-10 79.0 15.9 184 111-307 13-221 (527)
67 PRK07940 DNA polymerase III su 98.2 3E-05 6.6E-10 76.1 15.0 176 113-306 4-212 (394)
68 cd01128 rho_factor Transcripti 98.2 1.2E-06 2.7E-11 80.3 4.9 93 137-231 16-115 (249)
69 PRK07764 DNA polymerase III su 98.2 0.0001 2.2E-09 78.7 20.0 178 111-304 12-218 (824)
70 PRK14952 DNA polymerase III su 98.2 0.00012 2.6E-09 75.3 19.3 184 111-307 10-220 (584)
71 PRK09087 hypothetical protein; 98.2 4.4E-05 9.6E-10 69.3 14.6 52 255-308 145-196 (226)
72 PRK14950 DNA polymerase III su 98.2 4E-05 8.6E-10 79.7 16.0 185 111-307 13-221 (585)
73 TIGR02639 ClpA ATP-dependent C 98.2 1.4E-05 3.1E-10 85.3 13.0 47 114-162 182-228 (731)
74 PRK14959 DNA polymerase III su 98.2 8.8E-05 1.9E-09 76.1 17.9 188 111-311 13-225 (624)
75 PRK00149 dnaA chromosomal repl 98.2 0.0003 6.5E-09 71.0 21.7 190 114-326 122-349 (450)
76 PRK05564 DNA polymerase III su 98.2 9.3E-05 2E-09 71.0 17.2 166 114-306 4-189 (313)
77 TIGR03345 VI_ClpV1 type VI sec 98.2 1.2E-05 2.7E-10 86.6 11.8 49 113-163 186-234 (852)
78 TIGR03689 pup_AAA proteasome A 98.2 5.1E-05 1.1E-09 76.4 15.0 53 112-164 180-243 (512)
79 TIGR00678 holB DNA polymerase 98.2 5.2E-05 1.1E-09 67.0 13.5 39 256-302 148-186 (188)
80 PRK09111 DNA polymerase III su 98.2 0.00013 2.8E-09 75.4 18.2 188 111-306 21-232 (598)
81 PRK14954 DNA polymerase III su 98.2 0.0002 4.4E-09 74.1 19.7 185 111-302 13-223 (620)
82 PRK14953 DNA polymerase III su 98.1 0.00055 1.2E-08 69.2 22.0 182 111-308 13-221 (486)
83 PRK14970 DNA polymerase III su 98.1 0.00057 1.2E-08 67.1 21.8 170 111-304 14-206 (367)
84 PRK14088 dnaA chromosomal repl 98.1 7.7E-05 1.7E-09 74.7 15.5 149 137-307 130-305 (440)
85 PRK09376 rho transcription ter 98.1 5.3E-06 1.2E-10 79.7 6.3 95 137-233 169-270 (416)
86 PF13173 AAA_14: AAA domain 98.1 4.9E-06 1.1E-10 68.6 5.2 34 138-172 3-36 (128)
87 TIGR00362 DnaA chromosomal rep 98.1 0.00018 3.8E-09 71.7 16.8 147 137-306 136-309 (405)
88 CHL00095 clpC Clp protease ATP 98.1 2.4E-05 5.1E-10 84.6 11.2 47 114-162 179-225 (821)
89 KOG0989 Replication factor C, 98.1 0.00035 7.7E-09 64.3 16.9 173 110-301 32-224 (346)
90 PRK10865 protein disaggregatio 98.0 7.5E-05 1.6E-09 80.8 14.6 48 114-163 178-225 (857)
91 KOG2543 Origin recognition com 98.0 3.2E-05 6.9E-10 73.0 10.0 114 113-233 5-129 (438)
92 TIGR03346 chaperone_ClpB ATP-d 98.0 5.3E-05 1.2E-09 82.2 13.3 48 114-163 173-220 (852)
93 PRK06647 DNA polymerase III su 98.0 0.0004 8.7E-09 71.4 18.9 181 111-305 13-218 (563)
94 PF05673 DUF815: Protein of un 98.0 0.00027 5.9E-09 63.6 14.8 55 110-164 23-79 (249)
95 PRK07133 DNA polymerase III su 98.0 0.00073 1.6E-08 70.6 19.9 182 111-307 15-220 (725)
96 COG3267 ExeA Type II secretory 98.0 0.00042 9.2E-09 62.3 15.2 190 115-309 29-247 (269)
97 TIGR00767 rho transcription te 97.9 1.2E-05 2.7E-10 77.6 5.7 95 137-233 168-269 (415)
98 PRK06305 DNA polymerase III su 97.9 0.00024 5.3E-09 71.3 15.2 187 111-306 14-222 (451)
99 PRK14971 DNA polymerase III su 97.9 0.0018 3.8E-08 67.6 21.8 180 111-304 14-219 (614)
100 PRK08451 DNA polymerase III su 97.9 0.002 4.2E-08 65.6 21.3 185 111-307 11-218 (535)
101 PTZ00454 26S protease regulato 97.9 0.00016 3.4E-09 71.3 13.1 55 111-165 142-207 (398)
102 PRK06620 hypothetical protein; 97.9 0.00015 3.3E-09 65.3 11.8 24 138-161 45-68 (214)
103 PHA02544 44 clamp loader, smal 97.9 0.00022 4.7E-09 68.6 13.6 52 110-162 17-68 (316)
104 PF05621 TniB: Bacterial TniB 97.9 9.2E-05 2E-09 68.8 10.3 112 115-231 35-157 (302)
105 PF00004 AAA: ATPase family as 97.9 2E-05 4.3E-10 65.0 5.5 24 140-163 1-24 (132)
106 PRK14086 dnaA chromosomal repl 97.9 0.0032 6.9E-08 64.7 22.3 146 138-306 315-487 (617)
107 CHL00176 ftsH cell division pr 97.9 0.00024 5.1E-09 74.1 14.5 162 112-299 181-386 (638)
108 PRK14965 DNA polymerase III su 97.9 0.00078 1.7E-08 69.8 18.2 184 111-307 13-221 (576)
109 PRK14948 DNA polymerase III su 97.9 0.0013 2.8E-08 68.6 19.7 185 111-307 13-222 (620)
110 TIGR01241 FtsH_fam ATP-depende 97.9 0.00019 4E-09 73.4 13.5 171 111-307 52-267 (495)
111 smart00382 AAA ATPases associa 97.9 5.2E-05 1.1E-09 62.9 7.5 35 138-172 3-37 (148)
112 PRK05563 DNA polymerase III su 97.9 0.0013 2.9E-08 67.8 19.1 180 111-304 13-217 (559)
113 PRK11034 clpA ATP-dependent Cl 97.8 0.00015 3.3E-09 76.8 12.3 46 114-161 186-231 (758)
114 KOG0744 AAA+-type ATPase [Post 97.8 0.00017 3.7E-09 66.7 10.8 84 137-235 177-266 (423)
115 PRK07952 DNA replication prote 97.8 0.00023 4.9E-09 65.2 11.7 50 123-172 85-134 (244)
116 PRK12377 putative replication 97.8 0.00038 8.2E-09 63.9 13.1 36 137-172 101-136 (248)
117 PTZ00361 26 proteosome regulat 97.8 6.5E-05 1.4E-09 74.5 8.5 53 113-165 182-245 (438)
118 TIGR02881 spore_V_K stage V sp 97.8 8.7E-05 1.9E-09 69.2 8.8 47 115-161 7-66 (261)
119 TIGR02903 spore_lon_C ATP-depe 97.8 0.0015 3.2E-08 68.3 17.9 49 111-161 151-199 (615)
120 PRK09361 radB DNA repair and r 97.8 8.8E-05 1.9E-09 67.5 7.9 48 125-172 11-58 (225)
121 PRK07399 DNA polymerase III su 97.8 0.0021 4.7E-08 61.3 17.5 183 114-308 4-222 (314)
122 PRK11331 5-methylcytosine-spec 97.7 9E-05 2E-09 72.9 7.1 56 113-172 174-231 (459)
123 PRK12422 chromosomal replicati 97.7 0.00087 1.9E-08 67.1 14.0 142 137-301 141-307 (445)
124 PF10443 RNA12: RNA12 protein; 97.7 0.024 5.2E-07 55.4 23.1 58 256-313 209-284 (431)
125 KOG0991 Replication factor C, 97.7 0.001 2.2E-08 58.8 12.5 49 111-161 24-72 (333)
126 PHA00729 NTP-binding motif con 97.6 0.00069 1.5E-08 60.7 11.3 27 136-162 16-42 (226)
127 PRK05707 DNA polymerase III su 97.6 0.0024 5.2E-08 61.4 15.0 47 255-307 157-203 (328)
128 cd01123 Rad51_DMC1_radA Rad51_ 97.6 0.00025 5.4E-09 65.0 7.7 48 125-172 7-60 (235)
129 TIGR01243 CDC48 AAA family ATP 97.5 0.001 2.2E-08 71.4 13.3 53 112-164 176-239 (733)
130 TIGR02237 recomb_radB DNA repa 97.5 0.00019 4.2E-09 64.5 6.6 44 129-172 4-47 (209)
131 cd01394 radB RadB. The archaea 97.5 0.00019 4.2E-09 65.0 6.4 49 124-172 6-54 (218)
132 COG1222 RPT1 ATP-dependent 26S 97.5 0.0012 2.6E-08 62.2 11.2 160 114-301 151-357 (406)
133 TIGR01243 CDC48 AAA family ATP 97.5 0.0014 3E-08 70.4 13.4 161 113-301 452-657 (733)
134 cd01393 recA_like RecA is a b 97.5 0.00063 1.4E-08 61.9 9.3 48 125-172 7-60 (226)
135 CHL00195 ycf46 Ycf46; Provisio 97.5 0.0011 2.4E-08 66.9 11.8 52 112-163 226-285 (489)
136 PF04665 Pox_A32: Poxvirus A32 97.5 0.00026 5.6E-09 64.2 6.5 34 139-172 15-48 (241)
137 COG0593 DnaA ATPase involved i 97.5 0.0017 3.6E-08 63.4 12.2 122 136-277 112-258 (408)
138 CHL00181 cbbX CbbX; Provisiona 97.5 0.0038 8.3E-08 58.9 14.4 24 138-161 60-83 (287)
139 KOG0733 Nuclear AAA ATPase (VC 97.4 0.00038 8.2E-09 69.6 7.7 95 112-229 188-292 (802)
140 smart00763 AAA_PrkA PrkA AAA d 97.4 0.0004 8.7E-09 66.5 7.7 49 115-163 52-104 (361)
141 PRK08116 hypothetical protein; 97.4 0.00075 1.6E-08 63.0 9.4 35 138-172 115-149 (268)
142 KOG0735 AAA+-type ATPase [Post 97.4 0.0025 5.5E-08 65.0 13.5 74 137-230 431-505 (952)
143 PRK08118 topology modulation p 97.4 0.00013 2.7E-09 63.1 3.7 32 139-170 3-37 (167)
144 TIGR02880 cbbX_cfxQ probable R 97.4 0.0032 7E-08 59.3 13.5 24 139-162 60-83 (284)
145 PF13207 AAA_17: AAA domain; P 97.4 0.00014 3.1E-09 59.0 3.2 23 139-161 1-23 (121)
146 TIGR02639 ClpA ATP-dependent C 97.4 0.0026 5.6E-08 68.2 13.5 49 114-162 454-509 (731)
147 COG0542 clpA ATP-binding subun 97.3 0.001 2.2E-08 69.7 9.8 114 114-238 491-614 (786)
148 PRK12608 transcription termina 97.3 0.00086 1.9E-08 64.6 8.5 103 126-232 123-233 (380)
149 PF01695 IstB_IS21: IstB-like 97.3 0.00033 7.1E-09 61.1 5.1 35 138-172 48-82 (178)
150 COG1373 Predicted ATPase (AAA+ 97.3 0.013 2.7E-07 58.1 16.7 227 121-394 24-269 (398)
151 cd00983 recA RecA is a bacter 97.3 0.00064 1.4E-08 64.6 6.8 96 125-229 42-143 (325)
152 PRK06921 hypothetical protein; 97.3 0.00049 1.1E-08 64.1 6.0 36 137-172 117-153 (266)
153 PRK07261 topology modulation p 97.2 0.0015 3.2E-08 56.7 8.2 23 139-161 2-24 (171)
154 PRK11889 flhF flagellar biosyn 97.2 0.0028 6E-08 61.4 10.6 37 136-172 240-276 (436)
155 PRK06762 hypothetical protein; 97.2 0.0019 4.2E-08 55.6 8.9 24 138-161 3-26 (166)
156 PRK08769 DNA polymerase III su 97.2 0.012 2.7E-07 56.0 15.0 83 218-308 112-209 (319)
157 COG2607 Predicted ATPase (AAA+ 97.2 0.0086 1.9E-07 53.5 12.7 60 108-167 54-115 (287)
158 PRK00771 signal recognition pa 97.2 0.0061 1.3E-07 60.7 13.3 29 136-164 94-122 (437)
159 TIGR02012 tigrfam_recA protein 97.2 0.00064 1.4E-08 64.6 6.1 97 125-230 42-144 (321)
160 PRK09354 recA recombinase A; P 97.2 0.00073 1.6E-08 64.8 6.5 97 125-230 47-149 (349)
161 PLN00020 ribulose bisphosphate 97.2 0.00068 1.5E-08 64.7 6.2 29 136-164 147-175 (413)
162 COG0542 clpA ATP-binding subun 97.2 0.0014 3E-08 68.7 8.9 47 114-162 170-216 (786)
163 PRK06696 uridine kinase; Valid 97.2 0.00047 1E-08 62.7 4.8 45 119-163 3-48 (223)
164 PF13671 AAA_33: AAA domain; P 97.2 0.002 4.4E-08 53.8 8.3 24 139-162 1-24 (143)
165 PRK10536 hypothetical protein; 97.2 0.0031 6.8E-08 57.6 9.7 55 112-170 53-109 (262)
166 cd01133 F1-ATPase_beta F1 ATP 97.1 0.00058 1.3E-08 63.1 5.0 93 137-231 69-175 (274)
167 PRK07667 uridine kinase; Provi 97.1 0.00065 1.4E-08 60.2 5.2 41 123-163 3-43 (193)
168 TIGR00602 rad24 checkpoint pro 97.1 0.00064 1.4E-08 70.5 5.8 53 110-162 80-135 (637)
169 KOG1969 DNA replication checkp 97.1 0.0013 2.8E-08 67.3 7.7 74 136-230 325-398 (877)
170 COG1484 DnaC DNA replication p 97.1 0.0011 2.3E-08 61.4 6.7 37 136-172 104-140 (254)
171 PRK08058 DNA polymerase III su 97.1 0.013 2.7E-07 56.6 14.3 46 115-161 6-52 (329)
172 PRK06835 DNA replication prote 97.1 0.00068 1.5E-08 65.0 5.4 35 138-172 184-218 (329)
173 PRK08181 transposase; Validate 97.1 0.0017 3.6E-08 60.4 7.8 35 138-172 107-141 (269)
174 PF00448 SRP54: SRP54-type pro 97.1 0.00067 1.5E-08 60.1 4.8 35 138-172 2-36 (196)
175 KOG0730 AAA+-type ATPase [Post 97.1 0.0048 1E-07 62.6 11.0 53 114-166 434-497 (693)
176 TIGR00064 ftsY signal recognit 97.1 0.0055 1.2E-07 57.3 10.8 37 136-172 71-107 (272)
177 PRK07993 DNA polymerase III su 97.1 0.016 3.6E-07 55.8 14.4 166 122-304 10-201 (334)
178 KOG0733 Nuclear AAA ATPase (VC 97.1 0.0037 8.1E-08 62.8 10.0 117 137-277 545-693 (802)
179 cd01121 Sms Sms (bacterial rad 97.1 0.0019 4E-08 63.1 7.9 49 124-172 69-117 (372)
180 PRK06871 DNA polymerase III su 97.1 0.026 5.7E-07 54.0 15.4 164 123-304 11-200 (325)
181 COG1618 Predicted nucleotide k 97.1 0.00048 1.1E-08 57.4 3.2 35 138-172 6-42 (179)
182 PRK06526 transposase; Provisio 97.1 0.0013 2.8E-08 60.8 6.3 27 137-163 98-124 (254)
183 KOG0731 AAA+-type ATPase conta 97.0 0.019 4E-07 60.1 15.2 168 112-304 309-521 (774)
184 PRK08939 primosomal protein Dn 97.0 0.0019 4.1E-08 61.4 7.5 55 118-172 135-191 (306)
185 PF08423 Rad51: Rad51; InterP 97.0 0.0014 3.1E-08 60.7 6.5 36 125-160 26-61 (256)
186 PRK09183 transposase/IS protei 97.0 0.0022 4.7E-08 59.6 7.6 25 138-162 103-127 (259)
187 TIGR03499 FlhF flagellar biosy 97.0 0.0028 6.1E-08 59.7 8.4 28 136-163 193-220 (282)
188 COG0572 Udk Uridine kinase [Nu 97.0 0.0015 3.3E-08 57.9 6.0 30 135-164 6-35 (218)
189 COG0468 RecA RecA/RadA recombi 97.0 0.0043 9.3E-08 57.7 9.2 99 126-229 49-151 (279)
190 KOG0741 AAA+-type ATPase [Post 97.0 0.008 1.7E-07 59.5 11.3 36 135-172 536-571 (744)
191 cd01131 PilT Pilus retraction 97.0 0.0014 3.1E-08 58.3 5.9 91 138-238 2-93 (198)
192 COG1066 Sms Predicted ATP-depe 97.0 0.0033 7.1E-08 60.5 8.5 49 123-172 79-127 (456)
193 KOG2004 Mitochondrial ATP-depe 97.0 0.0019 4E-08 66.0 7.1 53 114-166 411-467 (906)
194 PRK08233 hypothetical protein; 97.0 0.003 6.6E-08 55.2 7.8 26 137-162 3-28 (182)
195 cd01120 RecA-like_NTPases RecA 97.0 0.0026 5.6E-08 54.2 7.2 34 139-172 1-34 (165)
196 PF00485 PRK: Phosphoribulokin 96.9 0.0039 8.5E-08 55.3 8.3 25 139-163 1-25 (194)
197 COG2812 DnaX DNA polymerase II 96.9 0.022 4.7E-07 57.5 14.3 177 111-302 13-215 (515)
198 COG4088 Predicted nucleotide k 96.9 0.0027 5.8E-08 55.2 6.7 28 138-165 2-29 (261)
199 PRK15455 PrkA family serine pr 96.9 0.00095 2.1E-08 67.4 4.5 50 114-163 76-129 (644)
200 TIGR03345 VI_ClpV1 type VI sec 96.9 0.0052 1.1E-07 66.6 10.4 50 114-163 566-622 (852)
201 COG0470 HolB ATPase involved i 96.9 0.0043 9.4E-08 59.7 9.0 48 115-162 2-49 (325)
202 TIGR02238 recomb_DMC1 meiotic 96.9 0.0027 5.8E-08 60.6 7.2 49 124-172 83-137 (313)
203 TIGR00763 lon ATP-dependent pr 96.9 0.011 2.4E-07 63.8 12.7 52 114-165 320-375 (775)
204 PRK10865 protein disaggregatio 96.9 0.011 2.4E-07 64.3 12.6 50 113-162 567-623 (857)
205 KOG0734 AAA+-type ATPase conta 96.9 0.0067 1.5E-07 60.1 9.8 48 113-160 303-360 (752)
206 COG0464 SpoVK ATPases of the A 96.9 0.005 1.1E-07 63.1 9.6 141 113-277 241-424 (494)
207 TIGR03346 chaperone_ClpB ATP-d 96.9 0.0079 1.7E-07 65.6 11.4 51 113-163 564-621 (852)
208 PRK10416 signal recognition pa 96.9 0.0099 2.1E-07 56.8 10.7 29 136-164 113-141 (318)
209 COG0563 Adk Adenylate kinase a 96.9 0.005 1.1E-07 53.6 8.0 23 139-161 2-24 (178)
210 PLN03187 meiotic recombination 96.8 0.003 6.5E-08 60.8 7.1 49 124-172 113-167 (344)
211 PF01583 APS_kinase: Adenylyls 96.8 0.0011 2.5E-08 55.9 3.6 35 138-172 3-37 (156)
212 PRK06090 DNA polymerase III su 96.8 0.1 2.3E-06 49.8 17.2 165 123-307 12-201 (319)
213 PF13238 AAA_18: AAA domain; P 96.8 0.00096 2.1E-08 54.6 3.0 22 140-161 1-22 (129)
214 PRK13531 regulatory ATPase Rav 96.8 0.0015 3.2E-08 65.0 4.8 45 114-162 20-64 (498)
215 PRK05541 adenylylsulfate kinas 96.8 0.0012 2.5E-08 57.7 3.7 36 137-172 7-42 (176)
216 PRK04301 radA DNA repair and r 96.8 0.0045 9.8E-08 59.4 8.0 49 124-172 89-143 (317)
217 TIGR03877 thermo_KaiC_1 KaiC d 96.8 0.0044 9.6E-08 56.8 7.7 49 124-172 8-56 (237)
218 COG4608 AppF ABC-type oligopep 96.8 0.005 1.1E-07 56.3 7.7 91 137-229 39-137 (268)
219 PRK06067 flagellar accessory p 96.8 0.005 1.1E-07 56.3 7.7 49 124-172 12-60 (234)
220 COG0466 Lon ATP-dependent Lon 96.7 0.0016 3.5E-08 66.6 4.6 53 114-166 323-379 (782)
221 CHL00095 clpC Clp protease ATP 96.7 0.012 2.5E-07 64.1 11.5 49 114-162 509-564 (821)
222 TIGR02236 recomb_radA DNA repa 96.7 0.0066 1.4E-07 58.1 8.7 49 124-172 82-136 (310)
223 COG1223 Predicted ATPase (AAA+ 96.7 0.014 3E-07 52.8 9.4 161 113-300 120-318 (368)
224 PRK10733 hflB ATP-dependent me 96.7 0.016 3.4E-07 61.2 11.5 52 113-164 151-212 (644)
225 PRK11823 DNA repair protein Ra 96.7 0.0054 1.2E-07 61.6 7.7 50 123-172 66-115 (446)
226 TIGR00416 sms DNA repair prote 96.7 0.0053 1.1E-07 61.7 7.6 50 123-172 80-129 (454)
227 COG2842 Uncharacterized ATPase 96.6 0.054 1.2E-06 50.1 13.3 122 97-230 55-176 (297)
228 PF07726 AAA_3: ATPase family 96.6 0.0012 2.5E-08 53.4 2.2 30 140-169 2-31 (131)
229 PRK12723 flagellar biosynthesi 96.6 0.011 2.3E-07 58.0 9.3 27 136-162 173-199 (388)
230 PF08433 KTI12: Chromatin asso 96.6 0.004 8.6E-08 58.0 5.9 26 138-163 2-27 (270)
231 cd03115 SRP The signal recogni 96.6 0.0069 1.5E-07 52.5 7.0 26 139-164 2-27 (173)
232 PRK03839 putative kinase; Prov 96.6 0.0018 3.9E-08 56.6 3.4 24 139-162 2-25 (180)
233 PRK10787 DNA-binding ATP-depen 96.6 0.026 5.6E-07 60.7 12.5 52 114-165 322-377 (784)
234 PRK05480 uridine/cytidine kina 96.6 0.0021 4.5E-08 57.8 3.7 26 136-161 5-30 (209)
235 KOG1514 Origin recognition com 96.6 0.058 1.3E-06 55.4 14.1 111 112-230 394-519 (767)
236 TIGR02239 recomb_RAD51 DNA rep 96.6 0.0083 1.8E-07 57.4 7.9 37 124-160 83-119 (316)
237 TIGR00959 ffh signal recogniti 96.6 0.038 8.2E-07 54.9 12.8 26 137-162 99-124 (428)
238 cd02019 NK Nucleoside/nucleoti 96.6 0.0018 4E-08 46.7 2.7 23 139-161 1-23 (69)
239 PRK12726 flagellar biosynthesi 96.5 0.0091 2E-07 57.7 7.9 37 136-172 205-241 (407)
240 PF07724 AAA_2: AAA domain (Cd 96.5 0.0015 3.3E-08 56.5 2.4 36 137-172 3-39 (171)
241 PTZ00035 Rad51 protein; Provis 96.5 0.011 2.4E-07 57.0 8.5 37 124-160 105-141 (337)
242 PRK11034 clpA ATP-dependent Cl 96.5 0.013 2.8E-07 62.5 9.6 49 114-162 458-513 (758)
243 PF07728 AAA_5: AAA domain (dy 96.5 0.0024 5.1E-08 53.2 3.3 22 140-161 2-23 (139)
244 PF00910 RNA_helicase: RNA hel 96.5 0.0014 3E-08 52.0 1.7 25 140-164 1-25 (107)
245 PRK04328 hypothetical protein; 96.5 0.01 2.2E-07 54.8 7.7 48 125-172 11-58 (249)
246 TIGR01425 SRP54_euk signal rec 96.5 0.03 6.5E-07 55.4 11.2 28 137-164 100-127 (429)
247 PTZ00301 uridine kinase; Provi 96.5 0.0025 5.4E-08 57.1 3.4 27 137-163 3-29 (210)
248 cd02027 APSK Adenosine 5'-phos 96.5 0.012 2.7E-07 49.7 7.5 24 139-162 1-24 (149)
249 PRK05703 flhF flagellar biosyn 96.4 0.013 2.7E-07 58.5 8.7 36 137-172 221-258 (424)
250 PRK04132 replication factor C 96.4 0.091 2E-06 56.5 15.4 141 143-305 570-729 (846)
251 TIGR03574 selen_PSTK L-seryl-t 96.4 0.0083 1.8E-07 55.5 7.0 25 139-163 1-25 (249)
252 PRK04296 thymidine kinase; Pro 96.4 0.0042 9.1E-08 54.9 4.7 34 138-171 3-36 (190)
253 PRK04040 adenylate kinase; Pro 96.4 0.0029 6.3E-08 55.7 3.6 25 138-162 3-27 (188)
254 TIGR02655 circ_KaiC circadian 96.4 0.0082 1.8E-07 61.2 7.4 50 123-172 249-298 (484)
255 TIGR00235 udk uridine kinase. 96.4 0.0033 7.1E-08 56.4 4.0 27 136-162 5-31 (207)
256 PLN03186 DNA repair protein RA 96.4 0.0079 1.7E-07 58.0 6.8 38 123-160 109-146 (342)
257 PRK14722 flhF flagellar biosyn 96.4 0.0099 2.1E-07 57.8 7.5 27 137-163 137-163 (374)
258 PRK00131 aroK shikimate kinase 96.4 0.0029 6.3E-08 54.8 3.5 26 137-162 4-29 (175)
259 PRK13765 ATP-dependent proteas 96.4 0.0055 1.2E-07 63.8 6.0 74 111-193 28-102 (637)
260 PRK00625 shikimate kinase; Pro 96.4 0.0027 5.8E-08 55.1 3.2 24 139-162 2-25 (173)
261 PRK06547 hypothetical protein; 96.4 0.0048 1E-07 53.5 4.7 27 135-161 13-39 (172)
262 cd02025 PanK Pantothenate kina 96.4 0.012 2.5E-07 53.3 7.4 24 139-162 1-24 (220)
263 PRK09270 nucleoside triphospha 96.4 0.0044 9.6E-08 56.5 4.7 31 134-164 30-60 (229)
264 KOG3928 Mitochondrial ribosome 96.4 0.037 8.1E-07 53.3 10.8 52 257-311 405-460 (461)
265 PRK06964 DNA polymerase III su 96.4 0.25 5.4E-06 47.7 16.7 80 218-307 131-225 (342)
266 TIGR01360 aden_kin_iso1 adenyl 96.3 0.0029 6.4E-08 55.6 3.2 26 136-161 2-27 (188)
267 TIGR00150 HI0065_YjeE ATPase, 96.3 0.0049 1.1E-07 50.6 4.2 40 122-161 7-46 (133)
268 PF00406 ADK: Adenylate kinase 96.3 0.02 4.3E-07 48.4 8.1 89 142-237 1-92 (151)
269 PRK08356 hypothetical protein; 96.3 0.014 3.1E-07 51.7 7.5 21 138-158 6-26 (195)
270 KOG2170 ATPase of the AAA+ sup 96.3 0.038 8.3E-07 51.1 10.1 42 120-161 92-134 (344)
271 cd00227 CPT Chloramphenicol (C 96.3 0.0033 7.2E-08 54.7 3.3 25 138-162 3-27 (175)
272 PRK06851 hypothetical protein; 96.3 0.011 2.4E-07 57.2 7.1 36 137-172 214-250 (367)
273 PRK12727 flagellar biosynthesi 96.3 0.016 3.5E-07 58.5 8.4 27 137-163 350-376 (559)
274 PRK15453 phosphoribulokinase; 96.3 0.021 4.5E-07 53.0 8.3 28 136-163 4-31 (290)
275 PRK13947 shikimate kinase; Pro 96.3 0.0036 7.7E-08 54.2 3.2 26 139-164 3-28 (171)
276 cd00984 DnaB_C DnaB helicase C 96.2 0.035 7.6E-07 51.0 9.9 52 136-193 12-64 (242)
277 PRK10867 signal recognition pa 96.2 0.017 3.7E-07 57.4 8.1 29 136-164 99-127 (433)
278 PRK00889 adenylylsulfate kinas 96.2 0.0047 1E-07 53.7 3.8 27 137-163 4-30 (175)
279 PF03308 ArgK: ArgK protein; 96.2 0.0067 1.4E-07 55.2 4.7 41 123-163 15-55 (266)
280 COG1102 Cmk Cytidylate kinase 96.2 0.004 8.7E-08 52.1 3.0 26 139-164 2-27 (179)
281 TIGR01420 pilT_fam pilus retra 96.2 0.011 2.5E-07 57.3 6.7 90 138-237 123-213 (343)
282 cd01129 PulE-GspE PulE/GspE Th 96.2 0.021 4.5E-07 53.2 8.1 101 122-238 68-168 (264)
283 cd01130 VirB11-like_ATPase Typ 96.2 0.005 1.1E-07 54.2 3.8 91 137-235 25-116 (186)
284 PF13479 AAA_24: AAA domain 96.2 0.011 2.4E-07 53.2 6.2 20 138-157 4-23 (213)
285 PF06068 TIP49: TIP49 C-termin 96.2 0.0074 1.6E-07 57.6 5.1 58 112-169 22-82 (398)
286 TIGR01359 UMP_CMP_kin_fam UMP- 96.2 0.0034 7.4E-08 55.0 2.7 23 139-161 1-23 (183)
287 TIGR03575 selen_PSTK_euk L-ser 96.2 0.019 4.2E-07 55.1 7.9 23 140-162 2-24 (340)
288 TIGR00390 hslU ATP-dependent p 96.2 0.0063 1.4E-07 59.5 4.6 52 114-165 12-75 (441)
289 PF00154 RecA: recA bacterial 96.1 0.0083 1.8E-07 56.9 5.3 98 125-231 40-143 (322)
290 PTZ00088 adenylate kinase 1; P 96.1 0.017 3.7E-07 52.5 7.1 23 139-161 8-30 (229)
291 KOG2035 Replication factor C, 96.1 0.21 4.7E-06 45.8 13.8 197 114-328 13-260 (351)
292 PRK12724 flagellar biosynthesi 96.1 0.027 5.8E-07 55.4 8.7 25 137-161 223-247 (432)
293 TIGR03878 thermo_KaiC_2 KaiC d 96.1 0.0069 1.5E-07 56.3 4.5 37 136-172 35-71 (259)
294 cd02028 UMPK_like Uridine mono 96.1 0.0048 1E-07 53.9 3.2 25 139-163 1-25 (179)
295 KOG0728 26S proteasome regulat 96.1 0.12 2.6E-06 46.5 11.8 45 116-160 148-204 (404)
296 PRK03846 adenylylsulfate kinas 96.0 0.007 1.5E-07 53.8 4.1 36 136-171 23-58 (198)
297 cd00071 GMPK Guanosine monopho 96.0 0.0048 1.1E-07 51.3 2.8 26 139-164 1-26 (137)
298 PF00158 Sigma54_activat: Sigm 96.0 0.006 1.3E-07 52.6 3.5 45 116-160 1-45 (168)
299 TIGR02322 phosphon_PhnN phosph 96.0 0.0053 1.2E-07 53.6 3.2 25 138-162 2-26 (179)
300 cd02023 UMPK Uridine monophosp 96.0 0.0042 9.2E-08 55.2 2.6 23 139-161 1-23 (198)
301 PRK06217 hypothetical protein; 96.0 0.0053 1.2E-07 53.9 3.2 23 139-161 3-25 (183)
302 PRK09519 recA DNA recombinatio 96.0 0.015 3.2E-07 61.6 6.8 97 124-229 46-148 (790)
303 cd02020 CMPK Cytidine monophos 96.0 0.0051 1.1E-07 51.6 2.9 23 139-161 1-23 (147)
304 COG0488 Uup ATPase components 96.0 0.047 1E-06 55.8 10.2 24 137-160 348-371 (530)
305 cd02024 NRK1 Nicotinamide ribo 96.0 0.0047 1E-07 54.2 2.7 23 139-161 1-23 (187)
306 COG1428 Deoxynucleoside kinase 96.0 0.0056 1.2E-07 53.7 3.1 26 137-162 4-29 (216)
307 COG0467 RAD55 RecA-superfamily 96.0 0.0087 1.9E-07 55.7 4.6 44 129-172 15-58 (260)
308 PF00625 Guanylate_kin: Guanyl 96.0 0.0077 1.7E-07 52.8 4.0 36 137-172 2-37 (183)
309 cd02021 GntK Gluconate kinase 96.0 0.0054 1.2E-07 51.8 2.9 23 139-161 1-23 (150)
310 PRK14974 cell division protein 96.0 0.035 7.7E-07 53.3 8.7 29 136-164 139-167 (336)
311 cd01122 GP4d_helicase GP4d_hel 96.0 0.057 1.2E-06 50.6 10.0 52 137-194 30-82 (271)
312 PF13481 AAA_25: AAA domain; P 96.0 0.04 8.7E-07 48.6 8.6 25 138-162 33-57 (193)
313 KOG0739 AAA+-type ATPase [Post 96.0 0.088 1.9E-06 48.7 10.6 93 114-230 133-236 (439)
314 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.0 0.016 3.5E-07 48.6 5.7 35 137-172 26-60 (144)
315 PRK14528 adenylate kinase; Pro 95.9 0.059 1.3E-06 47.4 9.4 24 138-161 2-25 (186)
316 TIGR02902 spore_lonB ATP-depen 95.9 0.0095 2.1E-07 61.3 5.0 48 111-160 62-109 (531)
317 PRK13949 shikimate kinase; Pro 95.9 0.0069 1.5E-07 52.4 3.4 24 139-162 3-26 (169)
318 PRK05201 hslU ATP-dependent pr 95.9 0.0097 2.1E-07 58.3 4.7 51 114-164 15-77 (443)
319 COG1936 Predicted nucleotide k 95.9 0.0057 1.2E-07 51.9 2.7 20 139-158 2-21 (180)
320 PF14532 Sigma54_activ_2: Sigm 95.9 0.0034 7.3E-08 52.3 1.3 45 117-161 1-45 (138)
321 cd00464 SK Shikimate kinase (S 95.9 0.0069 1.5E-07 51.3 3.2 22 140-161 2-23 (154)
322 COG0529 CysC Adenylylsulfate k 95.9 0.0088 1.9E-07 50.9 3.6 36 136-171 22-57 (197)
323 PF03266 NTPase_1: NTPase; In 95.8 0.0067 1.4E-07 52.3 2.9 23 140-162 2-24 (168)
324 TIGR01351 adk adenylate kinase 95.8 0.054 1.2E-06 48.6 8.9 22 140-161 2-23 (210)
325 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.013 2.8E-07 53.4 5.0 48 125-172 8-55 (229)
326 PRK13948 shikimate kinase; Pro 95.8 0.0078 1.7E-07 52.6 3.3 28 136-163 9-36 (182)
327 PRK05439 pantothenate kinase; 95.8 0.011 2.3E-07 56.0 4.4 29 135-163 84-112 (311)
328 PF03215 Rad17: Rad17 cell cyc 95.8 0.0096 2.1E-07 60.6 4.2 50 112-161 17-69 (519)
329 PRK05537 bifunctional sulfate 95.8 0.012 2.6E-07 60.8 5.0 50 114-163 369-418 (568)
330 KOG0729 26S proteasome regulat 95.8 0.034 7.4E-07 50.4 7.0 54 115-173 178-242 (435)
331 COG1703 ArgK Putative periplas 95.8 0.012 2.5E-07 54.5 4.2 41 124-164 38-78 (323)
332 PF10236 DAP3: Mitochondrial r 95.8 0.12 2.7E-06 49.2 11.5 48 257-304 258-306 (309)
333 TIGR00764 lon_rel lon-related 95.8 0.02 4.3E-07 59.8 6.5 59 111-173 15-74 (608)
334 PF13086 AAA_11: AAA domain; P 95.7 0.014 3E-07 53.0 4.8 37 121-161 5-41 (236)
335 KOG1051 Chaperone HSP104 and r 95.7 0.042 9E-07 58.8 8.8 103 114-230 562-671 (898)
336 TIGR02640 gas_vesic_GvpN gas v 95.7 0.012 2.7E-07 54.7 4.5 24 139-162 23-46 (262)
337 PRK14530 adenylate kinase; Pro 95.7 0.0084 1.8E-07 54.1 3.3 24 138-161 4-27 (215)
338 KOG0738 AAA+-type ATPase [Post 95.7 0.048 1E-06 52.2 8.3 73 88-165 191-273 (491)
339 TIGR01313 therm_gnt_kin carboh 95.7 0.007 1.5E-07 51.9 2.7 22 140-161 1-22 (163)
340 PRK13946 shikimate kinase; Pro 95.7 0.0086 1.9E-07 52.6 3.2 25 138-162 11-35 (184)
341 PRK14738 gmk guanylate kinase; 95.7 0.01 2.2E-07 53.2 3.7 27 134-160 10-36 (206)
342 PTZ00494 tuzin-like protein; P 95.7 0.11 2.3E-06 51.0 10.7 78 110-197 367-445 (664)
343 PRK12339 2-phosphoglycerate ki 95.7 0.0096 2.1E-07 52.8 3.5 25 137-161 3-27 (197)
344 PHA02244 ATPase-like protein 95.7 0.0093 2E-07 57.4 3.5 47 113-163 95-145 (383)
345 PRK08699 DNA polymerase III su 95.7 0.21 4.5E-06 48.0 12.8 25 137-161 21-45 (325)
346 TIGR03263 guanyl_kin guanylate 95.7 0.0081 1.8E-07 52.4 2.9 24 138-161 2-25 (180)
347 PRK10463 hydrogenase nickel in 95.7 0.017 3.7E-07 54.0 5.1 32 135-166 102-133 (290)
348 PRK10751 molybdopterin-guanine 95.7 0.011 2.4E-07 51.0 3.5 28 136-163 5-32 (173)
349 PF03205 MobB: Molybdopterin g 95.7 0.0095 2.1E-07 49.7 3.1 35 138-172 1-36 (140)
350 cd01124 KaiC KaiC is a circadi 95.7 0.0088 1.9E-07 52.5 3.1 33 140-172 2-34 (187)
351 PF01078 Mg_chelatase: Magnesi 95.7 0.015 3.2E-07 51.4 4.4 43 114-160 3-45 (206)
352 COG1224 TIP49 DNA helicase TIP 95.7 0.019 4E-07 54.3 5.2 56 111-166 36-94 (450)
353 COG1124 DppF ABC-type dipeptid 95.6 0.011 2.4E-07 53.0 3.5 25 137-161 33-57 (252)
354 COG0714 MoxR-like ATPases [Gen 95.6 0.014 3E-07 56.4 4.6 52 115-170 25-76 (329)
355 PRK10078 ribose 1,5-bisphospho 95.6 0.01 2.2E-07 52.3 3.2 25 138-162 3-27 (186)
356 PRK05342 clpX ATP-dependent pr 95.6 0.015 3.2E-07 57.6 4.7 50 114-163 71-134 (412)
357 PF08298 AAA_PrkA: PrkA AAA do 95.6 0.012 2.6E-07 56.1 3.8 51 114-164 61-115 (358)
358 COG1419 FlhF Flagellar GTP-bin 95.6 0.061 1.3E-06 52.2 8.6 86 137-228 203-290 (407)
359 PLN02165 adenylate isopentenyl 95.6 0.012 2.6E-07 56.0 3.8 26 137-162 43-68 (334)
360 PRK05057 aroK shikimate kinase 95.6 0.012 2.5E-07 51.1 3.5 25 138-162 5-29 (172)
361 PF13245 AAA_19: Part of AAA d 95.6 0.011 2.5E-07 43.4 2.9 24 137-160 10-33 (76)
362 COG0003 ArsA Predicted ATPase 95.6 0.016 3.4E-07 55.3 4.5 48 137-188 2-49 (322)
363 COG1120 FepC ABC-type cobalami 95.5 0.032 6.9E-07 51.2 6.2 24 137-160 28-51 (258)
364 PF13177 DNA_pol3_delta2: DNA 95.5 0.12 2.6E-06 44.2 9.6 43 118-161 1-43 (162)
365 PRK14721 flhF flagellar biosyn 95.5 0.071 1.5E-06 52.8 9.1 25 136-160 190-214 (420)
366 KOG0651 26S proteasome regulat 95.5 0.024 5.2E-07 52.6 5.4 29 137-165 166-194 (388)
367 KOG0735 AAA+-type ATPase [Post 95.5 0.098 2.1E-06 53.9 10.1 93 115-231 668-772 (952)
368 KOG3347 Predicted nucleotide k 95.5 0.011 2.4E-07 48.7 2.9 23 138-160 8-30 (176)
369 PRK09435 membrane ATPase/prote 95.5 0.02 4.4E-07 54.9 5.2 39 125-163 44-82 (332)
370 PRK14737 gmk guanylate kinase; 95.5 0.013 2.8E-07 51.5 3.6 26 136-161 3-28 (186)
371 PRK04182 cytidylate kinase; Pr 95.5 0.012 2.6E-07 51.2 3.4 24 139-162 2-25 (180)
372 PF12775 AAA_7: P-loop contain 95.5 0.0069 1.5E-07 56.6 1.9 25 138-162 34-58 (272)
373 PRK00300 gmk guanylate kinase; 95.5 0.01 2.3E-07 53.0 3.1 25 137-161 5-29 (205)
374 KOG1532 GTPase XAB1, interacts 95.5 0.013 2.9E-07 53.2 3.5 32 136-167 18-49 (366)
375 COG0703 AroK Shikimate kinase 95.5 0.012 2.6E-07 50.3 3.1 28 138-165 3-30 (172)
376 PRK13975 thymidylate kinase; P 95.5 0.013 2.8E-07 52.0 3.5 26 138-163 3-28 (196)
377 TIGR01650 PD_CobS cobaltochela 95.5 0.022 4.7E-07 54.2 5.2 47 115-165 46-92 (327)
378 PRK13407 bchI magnesium chelat 95.5 0.015 3.2E-07 55.9 4.1 48 111-161 5-53 (334)
379 PF06309 Torsin: Torsin; Inte 95.5 0.023 4.9E-07 45.9 4.5 47 114-160 25-76 (127)
380 KOG1970 Checkpoint RAD17-RFC c 95.5 0.047 1E-06 54.5 7.5 42 120-161 88-134 (634)
381 PF02456 Adeno_IVa2: Adenoviru 95.5 0.12 2.7E-06 48.0 9.7 91 138-228 88-205 (369)
382 COG0194 Gmk Guanylate kinase [ 95.5 0.015 3.2E-07 50.1 3.5 25 137-161 4-28 (191)
383 KOG0743 AAA+-type ATPase [Post 95.4 0.096 2.1E-06 51.3 9.4 24 138-161 236-259 (457)
384 PRK14527 adenylate kinase; Pro 95.4 0.013 2.8E-07 51.8 3.3 25 137-161 6-30 (191)
385 cd02029 PRK_like Phosphoribulo 95.4 0.042 9.1E-07 50.6 6.6 25 139-163 1-25 (277)
386 TIGR00041 DTMP_kinase thymidyl 95.4 0.072 1.6E-06 47.1 8.0 26 138-163 4-29 (195)
387 TIGR00665 DnaB replicative DNA 95.4 0.23 5E-06 50.0 12.6 71 118-195 177-248 (434)
388 KOG0736 Peroxisome assembly fa 95.4 0.027 5.9E-07 58.3 5.7 52 114-165 672-733 (953)
389 COG4240 Predicted kinase [Gene 95.4 0.061 1.3E-06 47.7 7.1 83 135-221 48-135 (300)
390 PF00437 T2SE: Type II/IV secr 95.4 0.023 4.9E-07 53.3 4.9 110 114-236 104-214 (270)
391 TIGR02782 TrbB_P P-type conjug 95.4 0.024 5.2E-07 53.8 5.1 85 138-235 133-220 (299)
392 cd03223 ABCD_peroxisomal_ALDP 95.4 0.032 6.9E-07 48.0 5.4 25 137-161 27-51 (166)
393 KOG0727 26S proteasome regulat 95.4 0.031 6.7E-07 50.3 5.3 52 114-165 155-217 (408)
394 PLN02200 adenylate kinase fami 95.3 0.015 3.2E-07 53.1 3.5 25 137-161 43-67 (234)
395 PRK03731 aroL shikimate kinase 95.3 0.014 3.1E-07 50.4 3.2 24 139-162 4-27 (171)
396 PF13521 AAA_28: AAA domain; P 95.3 0.012 2.6E-07 50.5 2.7 21 140-160 2-22 (163)
397 TIGR02173 cyt_kin_arch cytidyl 95.3 0.016 3.4E-07 50.0 3.4 23 139-161 2-24 (171)
398 KOG0652 26S proteasome regulat 95.3 0.61 1.3E-05 42.4 13.3 52 114-165 171-233 (424)
399 PRK09302 circadian clock prote 95.3 0.081 1.8E-06 54.4 9.2 50 123-172 259-308 (509)
400 PRK14723 flhF flagellar biosyn 95.3 0.13 2.8E-06 54.5 10.6 25 137-161 185-209 (767)
401 PRK13768 GTPase; Provisional 95.3 0.017 3.8E-07 53.4 3.8 27 138-164 3-29 (253)
402 smart00072 GuKc Guanylate kina 95.3 0.016 3.4E-07 50.9 3.4 28 138-165 3-30 (184)
403 PRK08533 flagellar accessory p 95.3 0.013 2.9E-07 53.4 3.0 37 136-172 23-59 (230)
404 TIGR02858 spore_III_AA stage I 95.3 0.074 1.6E-06 49.6 7.9 28 136-163 110-137 (270)
405 PF03029 ATP_bind_1: Conserved 95.3 0.014 3.1E-07 53.3 3.2 23 142-164 1-23 (238)
406 PF02374 ArsA_ATPase: Anion-tr 95.3 0.015 3.4E-07 55.3 3.5 35 138-172 2-36 (305)
407 cd00820 PEPCK_HprK Phosphoenol 95.3 0.017 3.6E-07 45.5 3.0 22 137-158 15-36 (107)
408 KOG2228 Origin recognition com 95.3 0.03 6.5E-07 52.6 5.1 114 114-229 24-147 (408)
409 TIGR00382 clpX endopeptidase C 95.3 0.024 5.3E-07 55.9 4.9 53 113-165 76-144 (413)
410 PF00006 ATP-synt_ab: ATP synt 95.3 0.029 6.3E-07 50.3 5.0 26 138-163 16-41 (215)
411 PF08477 Miro: Miro-like prote 95.3 0.016 3.4E-07 46.6 3.0 21 140-160 2-22 (119)
412 PRK05973 replicative DNA helic 95.3 0.022 4.8E-07 51.8 4.2 36 137-172 64-99 (237)
413 PF03193 DUF258: Protein of un 95.3 0.024 5.1E-07 48.2 4.1 35 121-160 24-58 (161)
414 TIGR00554 panK_bact pantothena 95.2 0.018 3.9E-07 54.1 3.7 28 135-162 60-87 (290)
415 cd01428 ADK Adenylate kinase ( 95.2 0.014 3.1E-07 51.5 3.0 22 140-161 2-23 (194)
416 PRK06761 hypothetical protein; 95.2 0.02 4.3E-07 53.5 3.9 27 138-164 4-30 (282)
417 PRK14532 adenylate kinase; Pro 95.2 0.016 3.5E-07 51.0 3.2 22 140-161 3-24 (188)
418 CHL00206 ycf2 Ycf2; Provisiona 95.2 0.076 1.6E-06 60.8 8.9 26 137-162 1630-1655(2281)
419 TIGR02788 VirB11 P-type DNA tr 95.2 0.033 7.2E-07 53.2 5.5 92 137-236 144-235 (308)
420 cd03222 ABC_RNaseL_inhibitor T 95.2 0.04 8.8E-07 47.9 5.6 25 137-161 25-49 (177)
421 PRK14493 putative bifunctional 95.2 0.018 3.9E-07 53.8 3.6 34 138-172 2-35 (274)
422 PLN02318 phosphoribulokinase/u 95.2 0.023 5E-07 58.0 4.5 29 133-161 61-89 (656)
423 PRK14531 adenylate kinase; Pro 95.2 0.017 3.6E-07 50.7 3.2 23 139-161 4-26 (183)
424 COG0465 HflB ATP-dependent Zn 95.2 0.08 1.7E-06 54.3 8.3 50 112-161 148-207 (596)
425 TIGR00176 mobB molybdopterin-g 95.2 0.016 3.6E-07 49.2 2.9 26 139-164 1-26 (155)
426 PRK14529 adenylate kinase; Pro 95.1 0.12 2.7E-06 46.6 8.6 90 140-237 3-95 (223)
427 TIGR00073 hypB hydrogenase acc 95.1 0.023 4.9E-07 51.0 3.9 29 134-162 19-47 (207)
428 PLN02348 phosphoribulokinase 95.1 0.039 8.4E-07 53.7 5.7 29 135-163 47-75 (395)
429 PF06745 KaiC: KaiC; InterPro 95.1 0.015 3.3E-07 52.8 2.8 47 126-172 8-55 (226)
430 PF07693 KAP_NTPase: KAP famil 95.1 0.058 1.3E-06 51.9 7.0 45 120-164 2-47 (325)
431 TIGR00750 lao LAO/AO transport 95.1 0.033 7.2E-07 53.0 5.2 29 135-163 32-60 (300)
432 KOG0726 26S proteasome regulat 95.1 0.031 6.7E-07 51.4 4.6 55 112-166 183-248 (440)
433 PRK09280 F0F1 ATP synthase sub 95.1 0.072 1.6E-06 53.2 7.5 93 137-231 144-250 (463)
434 PRK13764 ATPase; Provisional 95.1 0.05 1.1E-06 56.2 6.6 85 138-237 258-342 (602)
435 PRK06995 flhF flagellar biosyn 95.1 0.091 2E-06 52.9 8.3 25 137-161 256-280 (484)
436 PRK09825 idnK D-gluconate kina 95.1 0.02 4.3E-07 49.9 3.2 25 138-162 4-28 (176)
437 TIGR01817 nifA Nif-specific re 95.1 0.029 6.3E-07 58.1 5.0 51 111-161 193-243 (534)
438 PHA02530 pseT polynucleotide k 95.0 0.019 4.2E-07 54.6 3.4 24 138-161 3-26 (300)
439 TIGR03880 KaiC_arch_3 KaiC dom 95.0 0.031 6.6E-07 50.8 4.6 48 125-172 4-51 (224)
440 PRK12678 transcription termina 95.0 0.046 1E-06 55.4 6.0 29 137-165 416-444 (672)
441 PRK06002 fliI flagellum-specif 95.0 0.052 1.1E-06 53.9 6.4 25 137-161 165-189 (450)
442 cd01672 TMPK Thymidine monopho 95.0 0.038 8.3E-07 48.8 5.1 25 139-163 2-26 (200)
443 cd00544 CobU Adenosylcobinamid 95.0 0.13 2.8E-06 44.4 8.1 80 140-229 2-83 (169)
444 cd01983 Fer4_NifH The Fer4_Nif 95.0 0.02 4.2E-07 43.9 2.8 25 139-163 1-25 (99)
445 PRK11608 pspF phage shock prot 95.0 0.019 4.1E-07 55.3 3.2 47 114-160 6-52 (326)
446 PF09848 DUF2075: Uncharacteri 95.0 0.071 1.5E-06 52.0 7.2 35 138-172 2-38 (352)
447 CHL00081 chlI Mg-protoporyphyr 95.0 0.029 6.3E-07 54.1 4.3 47 112-160 15-61 (350)
448 COG0378 HypB Ni2+-binding GTPa 95.0 0.023 5E-07 49.2 3.2 36 137-172 13-48 (202)
449 COG0237 CoaE Dephospho-CoA kin 94.9 0.022 4.7E-07 50.5 3.2 22 138-159 3-24 (201)
450 COG2019 AdkA Archaeal adenylat 94.9 0.024 5.3E-07 47.7 3.2 25 137-161 4-28 (189)
451 COG3640 CooC CO dehydrogenase 94.9 0.032 6.9E-07 49.8 4.1 26 139-164 2-27 (255)
452 PRK05800 cobU adenosylcobinami 94.9 0.14 3E-06 44.2 8.1 23 139-161 3-25 (170)
453 PRK05922 type III secretion sy 94.9 0.056 1.2E-06 53.6 6.2 25 137-161 157-181 (434)
454 PRK01184 hypothetical protein; 94.9 0.021 4.6E-07 50.0 3.0 21 138-159 2-22 (184)
455 cd00561 CobA_CobO_BtuR ATP:cor 94.9 0.066 1.4E-06 45.4 5.9 33 138-170 3-35 (159)
456 cd03233 ABC_PDR_domain1 The pl 94.9 0.11 2.5E-06 46.2 7.8 26 137-162 33-58 (202)
457 KOG1942 DNA helicase, TBP-inte 94.9 0.074 1.6E-06 49.0 6.4 57 111-167 35-94 (456)
458 PRK12597 F0F1 ATP synthase sub 94.9 0.051 1.1E-06 54.3 6.0 93 137-231 143-249 (461)
459 COG2274 SunT ABC-type bacterio 94.9 0.059 1.3E-06 57.1 6.6 24 137-160 499-522 (709)
460 PRK09165 replicative DNA helic 94.9 0.42 9.1E-06 48.8 12.6 44 118-162 199-242 (497)
461 PRK06793 fliI flagellum-specif 94.9 0.088 1.9E-06 52.2 7.4 26 137-162 156-181 (432)
462 PRK12338 hypothetical protein; 94.9 0.025 5.4E-07 53.6 3.5 25 137-161 4-28 (319)
463 cd02022 DPCK Dephospho-coenzym 94.9 0.019 4.2E-07 50.1 2.6 21 139-159 1-21 (179)
464 COG1763 MobB Molybdopterin-gua 94.9 0.025 5.5E-07 48.0 3.2 35 137-171 2-36 (161)
465 TIGR03600 phage_DnaB phage rep 94.8 0.19 4.1E-06 50.4 10.0 72 117-195 175-247 (421)
466 PRK00279 adk adenylate kinase; 94.8 0.024 5.1E-07 51.2 3.2 23 139-161 2-24 (215)
467 cd03116 MobB Molybdenum is an 94.8 0.03 6.6E-07 47.7 3.6 27 138-164 2-28 (159)
468 PF00005 ABC_tran: ABC transpo 94.8 0.023 5E-07 47.0 2.8 24 138-161 12-35 (137)
469 COG1126 GlnQ ABC-type polar am 94.8 0.024 5.1E-07 50.1 2.9 35 137-172 28-62 (240)
470 PRK05595 replicative DNA helic 94.8 0.2 4.4E-06 50.5 10.1 72 117-195 182-254 (444)
471 cd01125 repA Hexameric Replica 94.8 0.2 4.3E-06 46.0 9.2 23 139-161 3-25 (239)
472 cd03214 ABC_Iron-Siderophores_ 94.7 0.15 3.3E-06 44.5 8.0 34 137-171 25-58 (180)
473 cd01132 F1_ATPase_alpha F1 ATP 94.7 0.056 1.2E-06 50.0 5.4 24 137-160 69-93 (274)
474 TIGR02030 BchI-ChlI magnesium 94.7 0.04 8.7E-07 53.1 4.6 46 114-161 4-49 (337)
475 PRK02496 adk adenylate kinase; 94.7 0.024 5.3E-07 49.7 2.9 23 139-161 3-25 (184)
476 PF02367 UPF0079: Uncharacteri 94.7 0.033 7.2E-07 45.0 3.4 26 136-161 14-39 (123)
477 TIGR01039 atpD ATP synthase, F 94.7 0.061 1.3E-06 53.5 5.8 93 137-231 143-249 (461)
478 PF13604 AAA_30: AAA domain; P 94.7 0.041 9E-07 48.8 4.3 40 122-164 6-45 (196)
479 COG4619 ABC-type uncharacteriz 94.7 0.033 7.1E-07 47.1 3.3 27 138-164 30-56 (223)
480 TIGR02974 phageshock_pspF psp 94.7 0.029 6.3E-07 54.1 3.5 45 116-160 1-45 (329)
481 cd03114 ArgK-like The function 94.7 0.027 5.8E-07 47.5 2.9 25 139-163 1-25 (148)
482 cd02034 CooC The accessory pro 94.6 0.034 7.3E-07 44.7 3.3 33 140-172 2-34 (116)
483 PLN02459 probable adenylate ki 94.6 0.26 5.7E-06 45.4 9.4 91 139-237 31-127 (261)
484 TIGR00455 apsK adenylylsulfate 94.6 0.036 7.8E-07 48.6 3.8 26 137-162 18-43 (184)
485 TIGR01287 nifH nitrogenase iro 94.6 0.027 5.9E-07 52.9 3.1 27 138-164 1-27 (275)
486 TIGR00017 cmk cytidylate kinas 94.6 0.032 7E-07 50.3 3.4 25 138-162 3-27 (217)
487 PRK13695 putative NTPase; Prov 94.6 0.03 6.5E-07 48.6 3.1 24 139-162 2-25 (174)
488 cd01136 ATPase_flagellum-secre 94.6 0.14 3E-06 49.0 7.7 26 137-162 69-94 (326)
489 COG1116 TauB ABC-type nitrate/ 94.5 0.03 6.4E-07 50.6 3.0 22 138-159 30-51 (248)
490 TIGR02524 dot_icm_DotB Dot/Icm 94.5 0.048 1E-06 53.0 4.7 95 137-238 134-231 (358)
491 PRK08154 anaerobic benzoate ca 94.5 0.045 9.8E-07 52.3 4.4 27 136-162 132-158 (309)
492 PLN02796 D-glycerate 3-kinase 94.5 0.032 6.9E-07 53.4 3.3 28 136-163 99-126 (347)
493 COG0283 Cmk Cytidylate kinase 94.5 0.035 7.6E-07 49.0 3.3 27 138-164 5-31 (222)
494 PF13555 AAA_29: P-loop contai 94.5 0.042 9.1E-07 38.4 3.0 22 139-160 25-46 (62)
495 PF07088 GvpD: GvpD gas vesicl 94.5 0.034 7.3E-07 53.4 3.3 30 137-166 10-39 (484)
496 PRK08099 bifunctional DNA-bind 94.5 0.029 6.4E-07 55.4 3.1 26 136-161 218-243 (399)
497 PF01926 MMR_HSR1: 50S ribosom 94.5 0.033 7.2E-07 44.6 2.9 21 140-160 2-22 (116)
498 cd04139 RalA_RalB RalA/RalB su 94.4 0.03 6.6E-07 47.6 2.8 22 139-160 2-23 (164)
499 PRK08972 fliI flagellum-specif 94.4 0.13 2.8E-06 51.0 7.4 25 137-161 162-186 (444)
500 TIGR01618 phage_P_loop phage n 94.4 0.025 5.5E-07 50.8 2.3 22 137-158 12-33 (220)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.8e-80 Score=680.44 Aligned_cols=432 Identities=38% Similarity=0.671 Sum_probs=380.6
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCCcccccccchHHHHHHHhHHhhhhcHHHHHHHHHHHHHHHhhcC
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRMNIEKVQKWRDALKKVANVSG 80 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g 80 (445)
|||+|+||||||++||||+++.+ ++|+||||+|||||||+|+|+||++|.++..+. ..+++++||+||+++|+++|
T Consensus 76 ~ya~s~wcl~el~~i~~~~~~~~--~~v~pvfy~v~p~~v~~~~g~f~~~f~~~~~~~--~~~~~~~w~~al~~~~~~~g 151 (1153)
T PLN03210 76 NYASSSWCLNELLEIVRCKEELG--QLVIPVFYGLDPSHVRKQTGDFGEAFEKTCQNK--TEDEKIQWKQALTDVANILG 151 (1153)
T ss_pred CcccchHHHHHHHHHHHhhhhcC--ceEEEEEecccHHHHhhccchHHHHHHHHhccc--chhHHHHHHHHHHHHhCcCc
Confidence 79999999999999999999999 999999999999999999999999999987754 35789999999999999999
Q ss_pred CccCC-chhhhhHhhhhhcccCCCCCCCCCccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHh
Q 045345 81 WELKD-RSESEFIVDIVKDILEMPSKIPAKSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 81 ~~~~~-~~e~~~i~~iv~~v~~~p~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
|++.. .+|+++|++||++|.++ +...++...+++|||+.++++|..+|....+++++|+|+||||+||||||+++|+
T Consensus 152 ~~~~~~~~E~~~i~~Iv~~v~~~--l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 152 YHSQNWPNEAKMIEEIANDVLGK--LNLTPSNDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred eecCCCCCHHHHHHHHHHHHHHh--hccccCcccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHH
Confidence 99864 67999999999999999 9888888889999999999999999987777899999999999999999999999
Q ss_pred hccCccccceeeehh--hh---hhc------cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCC
Q 045345 160 LSSHEFEASSFLANV--RE---ISE------KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAA 228 (445)
Q Consensus 160 ~~~~~f~~~~~~~~~--~~---~~~------~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 228 (445)
++..+|++.+|+... .. ... ......++.+++..+.......... ...++++++++|+|||||||
T Consensus 230 ~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv 305 (1153)
T PLN03210 230 RLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDL 305 (1153)
T ss_pred HHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCC
Confidence 999999998887532 11 100 1113456677777776543322222 24578889999999999999
Q ss_pred CCHHHHHHhcCCCCCc--CcccccccC---------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHh
Q 045345 229 FDLKQLESLAGKHEWF--DEHLLMTHG---------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYS 297 (445)
Q Consensus 229 ~~~~~l~~l~~~~~~~--~~~vl~t~~---------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 297 (445)
|+..+++.+.+...|+ +..|++|++ ...+|+++.|+.++|++||+++||+...+++.+.+++.+|+++|
T Consensus 306 ~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c 385 (1153)
T PLN03210 306 DDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRA 385 (1153)
T ss_pred CCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence 9999999998766665 344555443 45789999999999999999999988777778999999999999
Q ss_pred CCChHHHHHHHHhhCCCCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcH-hHHHHHhhhhccCCCCCHHHHHHHHHhCC
Q 045345 298 GGLPLALKVLGSFLYGKTTKEWESAPKRLERESENEILDILKISFDGLRE-TEKKIFLDIACFYRGEDRDYVTKIIDYCD 376 (445)
Q Consensus 298 ~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~-~~k~~~~~la~f~~~~~~~~l~~~~~~~~ 376 (445)
+|+||||+++|++|++++..+|+.++.+++..++..|..+|+.||+.|++ .+|.+|+++||||.+.+.+.+..++..++
T Consensus 386 ~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~ 465 (1153)
T PLN03210 386 GNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVNDIKLLLANSD 465 (1153)
T ss_pred CCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHHHHHHHHHhcC
Confidence 99999999999999999999999999999988888999999999999976 59999999999999999999999998888
Q ss_pred CCchhcHHHHhhcCceEEccCCeEEccHHHHHHHHHHHhhcCCCCCCCcccccccchHHHHhhhCcCC
Q 045345 377 FDPVIGIRVLIDKSLIEISNGNRLRMHNLLQEMGQQIVKRQSPKEPGKRSRLWKEEDVHHVLTKNTVS 444 (445)
Q Consensus 377 ~~~~~~l~~L~~~sLi~~~~~~~~~mHdlvr~~ar~~~~~e~~~~~~~~~rlw~~~d~~~~l~~~~~~ 444 (445)
..+..+++.|+++|||+.. ++++.||||+|+||++++++++ .+|++|+|+|+++|++++|++++|.
T Consensus 466 ~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~di~~vl~~~~g~ 531 (1153)
T PLN03210 466 LDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKDICDVLEDNTGT 531 (1153)
T ss_pred CCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHHHHHHHHhCccc
Confidence 8888899999999999987 6889999999999999999987 6899999999999999999999874
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=2e-41 Score=356.70 Aligned_cols=295 Identities=28% Similarity=0.379 Sum_probs=251.2
Q ss_pred cccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh---ccCccccceeeehhhhhhccCCHHHHHHHHHHH
Q 045345 117 VGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL---SSHEFEASSFLANVREISEKGGLICLQKQLLSE 193 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~ 193 (445)
||.+..++.+...|.... ..+++|+||||+||||||+.++++ +..+|+..+|+. +|.......++.+|+..
T Consensus 161 VG~e~~~~kl~~~L~~d~--~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~ 234 (889)
T KOG4658|consen 161 VGLETMLEKLWNRLMEDD--VGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILER 234 (889)
T ss_pred ccHHHHHHHHHHHhccCC--CCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHH
Confidence 999999999999998543 389999999999999999999986 568899999999 88889999999999999
Q ss_pred HhCCCCCC-CcChhhhHHHHHHHHccCcEEEEEcCCCCHHHHHHhcCCCCCc--CcccccccC----------CCceEEc
Q 045345 194 LLKLPDTS-TWNVYDGLKMIGSRLRYRKVLLIVDAAFDLKQLESLAGKHEWF--DEHLLMTHG----------VDEVHKL 260 (445)
Q Consensus 194 l~~~~~~~-~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~~~~~~~--~~~vl~t~~----------~~~~~~l 260 (445)
++...... ..........+.+.|+++|++|||||||+..+|+.+..+.+.- +.+++.|++ ....+++
T Consensus 235 l~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v 314 (889)
T KOG4658|consen 235 LGLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEV 314 (889)
T ss_pred hccCCcccchhhHHHHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccc
Confidence 88643322 2334677888999999999999999999999999987555433 356666654 3456899
Q ss_pred CCCCHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHhCCChHHHHHHHHhhCC-CCHHHHHHHHHHHhcC-------Cc
Q 045345 261 KVLHDDEALQLFCKQAFKTN-QPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYG-KTTKEWESAPKRLERE-------SE 331 (445)
Q Consensus 261 ~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~-------~~ 331 (445)
+.|+++|||.||++.+|... ...+..++++++++++|+|+|||+.++|+.|+. .+..+|+.+.+.+... ..
T Consensus 315 ~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~ 394 (889)
T KOG4658|consen 315 ECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGME 394 (889)
T ss_pred cccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchh
Confidence 99999999999999998763 333458999999999999999999999999998 4577999999988664 24
Q ss_pred hhHHHHHHHhhcCCcHhHHHHHhhhhccCCC--CCHHHHHHHHHhCCCC------------chhcHHHHhhcCceEEccC
Q 045345 332 NEILDILKISFDGLRETEKKIFLDIACFYRG--EDRDYVTKIIDYCDFD------------PVIGIRVLIDKSLIEISNG 397 (445)
Q Consensus 332 ~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~sLi~~~~~ 397 (445)
..+..++..||+.|+++.|.||+|||.||.+ ++.+.+...|.++|+. +..++.+|++++|+.....
T Consensus 395 ~~i~~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~ 474 (889)
T KOG4658|consen 395 ESILPILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERD 474 (889)
T ss_pred hhhHHhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccc
Confidence 6889999999999999999999999999998 7889999999999954 3447999999999987642
Q ss_pred ----CeEEccHHHHHHHHHHHhhc
Q 045345 398 ----NRLRMHNLLQEMGQQIVKRQ 417 (445)
Q Consensus 398 ----~~~~mHdlvr~~ar~~~~~e 417 (445)
..+.|||+||+||..++++.
T Consensus 475 ~~~~~~~kmHDvvRe~al~ias~~ 498 (889)
T KOG4658|consen 475 EGRKETVKMHDVVREMALWIASDF 498 (889)
T ss_pred ccceeEEEeeHHHHHHHHHHhccc
Confidence 56999999999999999833
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=1.3e-37 Score=295.42 Aligned_cols=257 Identities=30% Similarity=0.461 Sum_probs=202.9
Q ss_pred cchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh--ccCccccceeeehhhhhhccCCHHHHHHHHHHHHhC
Q 045345 119 MDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL--SSHEFEASSFLANVREISEKGGLICLQKQLLSELLK 196 (445)
Q Consensus 119 r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~ 196 (445)
||.++++|.+.|....++.++|+|+||||+||||||.+++++ +..+|+.++|+. .+.......++.+++..+..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccccccccccccccccc----cccccccccccccccccccc
Confidence 789999999999875578999999999999999999999998 889999999998 55556668888999998876
Q ss_pred CCCC--CCcChhhhHHHHHHHHccCcEEEEEcCCCCHHHHHHhcCCCCCc--CcccccccCC----------CceEEcCC
Q 045345 197 LPDT--STWNVYDGLKMIGSRLRYRKVLLIVDAAFDLKQLESLAGKHEWF--DEHLLMTHGV----------DEVHKLKV 262 (445)
Q Consensus 197 ~~~~--~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~~~~~~~--~~~vl~t~~~----------~~~~~l~~ 262 (445)
.... ...+.......+.+.|.++++||||||||+...++.+....... +.++++|++. ...++|++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~ 156 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP 156 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 5322 45677778899999999999999999999999887776443322 5667777653 24699999
Q ss_pred CCHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHhCCChHHHHHHHHhhCC-CCHHHHHHHHHHHhcCC------chhH
Q 045345 263 LHDDEALQLFCKQAFKTN-QPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYG-KTTKEWESAPKRLERES------ENEI 334 (445)
Q Consensus 263 L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~------~~~i 334 (445)
|+.+||++||.+.++... ...+...+.+++|++.|+|+||||+++|++|+. .+..+|+..++.+.... ...+
T Consensus 157 L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~ 236 (287)
T PF00931_consen 157 LSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSV 236 (287)
T ss_dssp --HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999997654 233445678999999999999999999999955 35678999988876532 4789
Q ss_pred HHHHHHhhcCCcHhHHHHHhhhhccCCC--CCHHHHHHHHHhCCCCc
Q 045345 335 LDILKISFDGLRETEKKIFLDIACFYRG--EDRDYVTKIIDYCDFDP 379 (445)
Q Consensus 335 ~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~~~~~~~~~~ 379 (445)
..++..||+.|+++.|+||++||+||.+ ++.+.+..+|..+|+..
T Consensus 237 ~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 237 FSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp HHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC
T ss_pred cccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCc
Confidence 9999999999999999999999999987 56999999999887654
No 4
>PLN03194 putative disease resistance protein; Provisional
Probab=99.91 E-value=2e-25 Score=188.47 Aligned_cols=83 Identities=27% Similarity=0.444 Sum_probs=73.4
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCCcccccc-cchHHHHHHHhHHhhhhcHHHHHHHHHHHHHHHhhc
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQ-TASFGEAFSKHEETFRMNIEKVQKWRDALKKVANVS 79 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~ps~vr~~-~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~ 79 (445)
|||+|+|||+||++|++|+ ..||||||+|||||||+| .|.+ ..+++++||+||+++++++
T Consensus 91 ~Ya~S~WCLdEL~~I~e~~------~~ViPIFY~VdPsdVr~q~~~~~-------------~~e~v~~Wr~AL~~va~l~ 151 (187)
T PLN03194 91 RYCESYFCLHELALIMESK------KRVIPIFCDVKPSQLRVVDNGTC-------------PDEEIRRFNWALEEAKYTV 151 (187)
T ss_pred CcccchhHHHHHHHHHHcC------CEEEEEEecCCHHHhhccccCCC-------------CHHHHHHHHHHHHHHhccc
Confidence 7999999999999999984 589999999999999997 4431 2478999999999999999
Q ss_pred CCccC--CchhhhhHhhhhhcccCC
Q 045345 80 GWELK--DRSESEFIVDIVKDILEM 102 (445)
Q Consensus 80 g~~~~--~~~e~~~i~~iv~~v~~~ 102 (445)
|++++ .++|+++|++||+.|.++
T Consensus 152 G~~~~~~~~~e~e~i~~iv~~v~k~ 176 (187)
T PLN03194 152 GLTFDSLKGNWSEVVTMASDAVIKN 176 (187)
T ss_pred cccCCCCCCCHHHHHHHHHHHHHHH
Confidence 98765 467999999999999877
No 5
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.70 E-value=3.3e-15 Score=163.92 Aligned_cols=287 Identities=12% Similarity=0.137 Sum_probs=183.5
Q ss_pred CccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhh-ccCCHHHHH
Q 045345 109 KSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREIS-EKGGLICLQ 187 (445)
Q Consensus 109 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~-~~~~~~~l~ 187 (445)
||..+..+|-|..-++.|... ...+++.|+|++|.||||++..+.... +.++|+. .. ...+...+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~ 75 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-----NNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFA 75 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-----cCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHH
Confidence 444566789998777766532 346899999999999999999988632 3688986 32 223444455
Q ss_pred HHHHHHHhCCCCC------------CCcChhhhHHHHHHHHc--cCcEEEEEcCCCCH------HHHHHhcCCCCCcCcc
Q 045345 188 KQLLSELLKLPDT------------STWNVYDGLKMIGSRLR--YRKVLLIVDAAFDL------KQLESLAGKHEWFDEH 247 (445)
Q Consensus 188 ~~il~~l~~~~~~------------~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~l~~l~~~~~~~~~~ 247 (445)
..++..+...... ...+.......+...+. +.+++|||||++.. +.+..++..... +.+
T Consensus 76 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~-~~~ 154 (903)
T PRK04841 76 SYLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPE-NLT 154 (903)
T ss_pred HHHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCC-CeE
Confidence 5555555311111 00122222333333333 68999999999753 244444433221 344
Q ss_pred cccccCCC------------ceEEcC----CCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 248 LLMTHGVD------------EVHKLK----VLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 248 vl~t~~~~------------~~~~l~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
++++++.. ...++. +|+.+|+.+||...... ..+ .+.+.+|.+.|+|+|+++..++..+
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~~~----~~~~~~l~~~t~Gwp~~l~l~~~~~ 229 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-PIE----AAESSRLCDDVEGWATALQLIALSA 229 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-CCC----HHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44444432 123455 89999999999876522 211 2457789999999999999998877
Q ss_pred CCCCHHHHHHHHHHHhcCCchhHHHHHHH-hhcCCcHhHHHHHhhhhccCCCCCHHHHHHHHHhCCCCchhcHHHHhhcC
Q 045345 312 YGKTTKEWESAPKRLERESENEILDILKI-SFDGLRETEKKIFLDIACFYRGEDRDYVTKIIDYCDFDPVIGIRVLIDKS 390 (445)
Q Consensus 312 ~~~~~~~w~~~l~~l~~~~~~~i~~~l~~-s~~~L~~~~k~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~s 390 (445)
...... .......+...+...+...+.. .++.||++.+.++..+|+++ .++.+.+..+.+ ..+....++.|.+.+
T Consensus 230 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~ 305 (903)
T PRK04841 230 RQNNSS-LHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQG 305 (903)
T ss_pred hhCCCc-hhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCC
Confidence 543210 1111222222223446555443 48999999999999999985 778777666654 224567899999999
Q ss_pred ceEE-cc--CCeEEccHHHHHHHHHHHhhcC
Q 045345 391 LIEI-SN--GNRLRMHNLLQEMGQQIVKRQS 418 (445)
Q Consensus 391 Li~~-~~--~~~~~mHdlvr~~ar~~~~~e~ 418 (445)
|+.. .+ ..+|++|++++++.++.+..+.
T Consensus 306 l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~ 336 (903)
T PRK04841 306 LFIQRMDDSGEWFRYHPLFASFLRHRCQWEL 336 (903)
T ss_pred CeeEeecCCCCEEehhHHHHHHHHHHHHhcC
Confidence 9653 22 2379999999999999886553
No 6
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.48 E-value=1.1e-11 Score=123.11 Aligned_cols=274 Identities=16% Similarity=0.119 Sum_probs=162.4
Q ss_pred cccccccccchhHHHHHhhhccC--CCCeEEEEEEccCCCchhHHHHHHHhhccCccc--cceeeehhhhhhccCCHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKE--PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE--ASSFLANVREISEKGGLICL 186 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l 186 (445)
..|+.|+||+.++++|...+... ....+.+.|+|++|+|||++++.+++.+....+ ..+++. .....+...+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~ 102 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAI 102 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHH
Confidence 46678999999999999988542 233456789999999999999999998755432 233443 2233456677
Q ss_pred HHHHHHHHhCCCC-CCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCHH------HHHHhcCCCCCc-C-c--cccccc-
Q 045345 187 QKQLLSELLKLPD-TSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDLK------QLESLAGKHEWF-D-E--HLLMTH- 252 (445)
Q Consensus 187 ~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~l~~l~~~~~~~-~-~--~vl~t~- 252 (445)
+..++.++..... ....+..+....+.+.+. +++.+||||+++... .+..+....... + . .++++.
T Consensus 103 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~ 182 (394)
T PRK00411 103 FSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSD 182 (394)
T ss_pred HHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECC
Confidence 7888888765222 222345556666666665 456899999998643 344433211100 0 0 111111
Q ss_pred --------------CCCceEEcCCCCHHHHHHHHHHhhcC---CC-CCchHHHHHHHHHHHHhCCChHHHHHHHHhh---
Q 045345 253 --------------GVDEVHKLKVLHDDEALQLFCKQAFK---TN-QPWKEYEQLSKYVVKYSGGLPLALKVLGSFL--- 311 (445)
Q Consensus 253 --------------~~~~~~~l~~L~~~ea~~Lf~~~a~~---~~-~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L--- 311 (445)
.....+.+++++.++..+++..++.. .. .+.+..+.+++......|..+.|+.++-...
T Consensus 183 ~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a 262 (394)
T PRK00411 183 LTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIA 262 (394)
T ss_pred cchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 11245789999999999999877622 11 2222222222322222455777777664322
Q ss_pred --CC---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC----CCCCHHHHHHH----HHhCCCC
Q 045345 312 --YG---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFY----RGEDRDYVTKI----IDYCDFD 378 (445)
Q Consensus 312 --~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~----~~~~~~~l~~~----~~~~~~~ 378 (445)
.+ -+.+....+.+.+. ...+...+..||..+|.++..++... ..+....+... ....+..
T Consensus 263 ~~~~~~~I~~~~v~~a~~~~~-------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 263 EREGSRKVTEEDVRKAYEKSE-------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred HHcCCCCcCHHHHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 13455555555441 23345568899999999888777543 23444444322 2222332
Q ss_pred c------hhcHHHHhhcCceEEc
Q 045345 379 P------VIGIRVLIDKSLIEIS 395 (445)
Q Consensus 379 ~------~~~l~~L~~~sLi~~~ 395 (445)
+ ...+..|...|||...
T Consensus 336 ~~~~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRTHTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCcHHHHHHHHHHHHhcCCeEEE
Confidence 2 3468999999999853
No 7
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.46 E-value=1.3e-12 Score=126.07 Aligned_cols=275 Identities=14% Similarity=0.130 Sum_probs=155.3
Q ss_pred cccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....+|+|++..++.+..++.. .....+.+.|+|++|+|||+||+.+++.+...+. +.. ....... ..+
T Consensus 22 ~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~~~~~----~~l 93 (328)
T PRK00080 22 KSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPALEKP----GDL 93 (328)
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-cccccCh----HHH
Confidence 3567899999999999887753 2233567889999999999999999998754321 111 0000000 111
Q ss_pred HHHHHHHhCCCCCCCcChh----hhHHHHHHHHccCcEEEEEcCCCCHHHHHHhcCCCCCc---C--cccc--cccCCCc
Q 045345 188 KQLLSELLKLPDTSTWNVY----DGLKMIGSRLRYRKVLLIVDAAFDLKQLESLAGKHEWF---D--EHLL--MTHGVDE 256 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~----~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~~~~~~~---~--~~vl--~t~~~~~ 256 (445)
..++..+......-.++.+ ...+.+...+.+.+..+++|+..+..++....+....+ + ..+. ..++...
T Consensus 94 ~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~ 173 (328)
T PRK00080 94 AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGI 173 (328)
T ss_pred HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHHhcCe
Confidence 2222222110000000111 11222333444445555555544333222111110000 0 0000 1112345
Q ss_pred eEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHH--HHhcCCchhH
Q 045345 257 VHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPK--RLERESENEI 334 (445)
Q Consensus 257 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~--~l~~~~~~~i 334 (445)
.+++++++.++..+++...+...... -..+.+..|++.|+|.|-.+..+...+. .|..... .+....-...
T Consensus 174 ~~~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~~-----~~a~~~~~~~I~~~~v~~~ 246 (328)
T PRK00080 174 VQRLEFYTVEELEKIVKRSARILGVE--IDEEGALEIARRSRGTPRIANRLLRRVR-----DFAQVKGDGVITKEIADKA 246 (328)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHHH-----HHHHHcCCCCCCHHHHHHH
Confidence 68999999999999999887443322 2346688999999999976655554331 1111100 0000001223
Q ss_pred HHHHHHhhcCCcHhHHHHHh-hhhccCCC-CCHHHHHHHHHhCCCCchhcHH-HHhhcCceEEccCCeE
Q 045345 335 LDILKISFDGLRETEKKIFL-DIACFYRG-EDRDYVTKIIDYCDFDPVIGIR-VLIDKSLIEISNGNRL 400 (445)
Q Consensus 335 ~~~l~~s~~~L~~~~k~~~~-~la~f~~~-~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~~ 400 (445)
...+...+..|++..+..+. .+..|..+ +..+.+...++.+....+..++ .|++.+||.....|++
T Consensus 247 l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr~ 315 (328)
T PRK00080 247 LDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGRV 315 (328)
T ss_pred HHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchHH
Confidence 34556777889998888886 55666544 7889999988877777777788 9999999987656653
No 8
>COG3899 Predicted ATPase [General function prediction only]
Probab=99.45 E-value=2.8e-12 Score=136.95 Aligned_cols=300 Identities=16% Similarity=0.200 Sum_probs=182.5
Q ss_pred cccccchhHHHHHhhhccC-CCCeEEEEEEccCCCchhHHHHHHHhhccCcc--------c-------cceeeehhhhhh
Q 045345 115 DLVGMDSCWNTLRFLMDKE-PYGVRMIGICGMGGIGKTTLARVVYDLSSHEF--------E-------ASSFLANVREIS 178 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f--------~-------~~~~~~~~~~~~ 178 (445)
.++||+.+++.|...+..- .....++.+.|.+|||||+|+++|...+..++ + -..|+..+++..
T Consensus 1 ~l~GRe~ev~~Ll~~f~~v~~g~~~~~lv~G~sGIGKsalv~ev~~~i~~~~~~~i~~~f~q~~~~ipl~~lvq~~r~l~ 80 (849)
T COG3899 1 PLYGRETELAQLLAAFDRVSKGRGEVVLVAGESGIGKSALVNEVHKPITQQRGYFIKGKFDQFERNIPLSPLVQAFRDLM 80 (849)
T ss_pred CCCchHhHHHHHHHHHHHHhCCCeEEEEEeecCCCcHHHHHHHHHHHHhccceeeeHhhcccccCCCchHHHHHHHHHHH
Confidence 3799999999999998863 34467999999999999999999998754441 1 112222222211
Q ss_pred c------cCCHHHHHHHHHHHHhCCC-----------------CC--C--CcChhh-----hHHHHHHHH-ccCcEEEEE
Q 045345 179 E------KGGLICLQKQLLSELLKLP-----------------DT--S--TWNVYD-----GLKMIGSRL-RYRKVLLIV 225 (445)
Q Consensus 179 ~------~~~~~~l~~~il~~l~~~~-----------------~~--~--~~~~~~-----~~~~l~~~l-~~~~~LlVl 225 (445)
. .........+++..++... ++ + ...... ....+.... +.+|.++|+
T Consensus 81 ~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plVi~l 160 (849)
T COG3899 81 GQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLVIVL 160 (849)
T ss_pred HHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeEEEE
Confidence 1 1111222223333222110 00 0 000001 122222223 346999999
Q ss_pred cCCCC-----HHHHHHhcCCCC--Cc-Cccccccc-------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCch
Q 045345 226 DAAFD-----LKQLESLAGKHE--WF-DEHLLMTH-------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWK 284 (445)
Q Consensus 226 Ddv~~-----~~~l~~l~~~~~--~~-~~~vl~t~-------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~ 284 (445)
||+.. ..-++.++.... .+ +..+...+ ..-..+.|.||+..+...|...........
T Consensus 161 eDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~-- 238 (849)
T COG3899 161 EDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKLL-- 238 (849)
T ss_pred ecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCcccc--
Confidence 99952 223444432221 11 11222211 122568999999999999998877332222
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHhhCCC-------CHHHHHHHHHHHhcCC-chhHHHHHHHhhcCCcHhHHHHHhhh
Q 045345 285 EYEQLSKYVVKYSGGLPLALKVLGSFLYGK-------TTKEWESAPKRLERES-ENEILDILKISFDGLRETEKKIFLDI 356 (445)
Q Consensus 285 ~~~~~~~~i~~~~~GlPLal~~~~~~L~~~-------~~~~w~~~l~~l~~~~-~~~i~~~l~~s~~~L~~~~k~~~~~l 356 (445)
..+....|++++.|+|+.++.+-..+... +...|..-...+.... ...+...+..-.+.||...|+++...
T Consensus 239 -~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~t~~Vl~~A 317 (849)
T COG3899 239 -PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGTTREVLKAA 317 (849)
T ss_pred -cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 23568889999999999999999888663 2344555444443322 13355678889999999999999999
Q ss_pred hccCCCCCHHHHHHHHHhCCCCchhcHHHHhhcCceEEcc--------CC---eEEccHHHHHHHHHHHhhc
Q 045345 357 ACFYRGEDRDYVTKIIDYCDFDPVIGIRVLIDKSLIEISN--------GN---RLRMHNLLQEMGQQIVKRQ 417 (445)
Q Consensus 357 a~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~--------~~---~~~mHdlvr~~ar~~~~~e 417 (445)
||+.+.|+.+.+..++..........+-.....++|...+ .. +-..|++||+.|...+.+.
T Consensus 318 A~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i~~~ 389 (849)
T COG3899 318 ACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLIPES 389 (849)
T ss_pred HHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccCchh
Confidence 9999999999999998754443334444444445544321 11 1267999999887765443
No 9
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=1.7e-12 Score=124.16 Aligned_cols=269 Identities=12% Similarity=0.085 Sum_probs=152.5
Q ss_pred ccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
.+|||++..++.|..++.. .....+.+.|+|++|+|||+||+.+++.+...+. ... ......... ....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~---~~~----~~~~~~~~~-l~~~ 75 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLK---ITS----GPALEKPGD-LAAI 75 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE---Eec----cchhcCchh-HHHH
Confidence 5799999999999888863 1223456889999999999999999987654321 111 000011111 1111
Q ss_pred HHHHhCCCCCCCcCh----hhhHHHHHHHHccCcEEEEEcCCCCHHHHHHhcCCCCCc-----Ccccc--cccCCCceEE
Q 045345 191 LSELLKLPDTSTWNV----YDGLKMIGSRLRYRKVLLIVDAAFDLKQLESLAGKHEWF-----DEHLL--MTHGVDEVHK 259 (445)
Q Consensus 191 l~~l~~~~~~~~~~~----~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~~~~~~~-----~~~vl--~t~~~~~~~~ 259 (445)
+..+......-.++. ....+.+...+.+.+..+|+++..+..++....+....+ ...+. ..++....+.
T Consensus 76 l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~sR~~~~~~ 155 (305)
T TIGR00635 76 LTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRDRFGIILR 155 (305)
T ss_pred HHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHhhcceEEE
Confidence 222211000000000 011233444445555556666554443333222111000 00000 1122345689
Q ss_pred cCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHHHhc--CCc---hhH
Q 045345 260 LKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKRLER--ESE---NEI 334 (445)
Q Consensus 260 l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~--~~~---~~i 334 (445)
+++++.++..+++.+.+...... -..+.+..|++.|+|.|..+..++..+. .... .... ... ...
T Consensus 156 l~~l~~~e~~~il~~~~~~~~~~--~~~~al~~ia~~~~G~pR~~~~ll~~~~-------~~a~-~~~~~~it~~~v~~~ 225 (305)
T TIGR00635 156 LEFYTVEELAEIVSRSAGLLNVE--IEPEAALEIARRSRGTPRIANRLLRRVR-------DFAQ-VRGQKIINRDIALKA 225 (305)
T ss_pred eCCCCHHHHHHHHHHHHHHhCCC--cCHHHHHHHHHHhCCCcchHHHHHHHHH-------HHHH-HcCCCCcCHHHHHHH
Confidence 99999999999999887432221 2245678899999999987765554331 1100 0000 000 122
Q ss_pred HHHHHHhhcCCcHhHHHHHh-hhhccCC-CCCHHHHHHHHHhCCCCchhcHH-HHhhcCceEEccCCeE
Q 045345 335 LDILKISFDGLRETEKKIFL-DIACFYR-GEDRDYVTKIIDYCDFDPVIGIR-VLIDKSLIEISNGNRL 400 (445)
Q Consensus 335 ~~~l~~s~~~L~~~~k~~~~-~la~f~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~sLi~~~~~~~~ 400 (445)
...+...+..|++.++..+. .++.+.. +++.+.+...++.........++ .|++++||...+.|++
T Consensus 226 l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~ 294 (305)
T TIGR00635 226 LEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI 294 (305)
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence 22256678889998888777 4465643 37788888888877777777788 6999999987666654
No 10
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=99.41 E-value=2.9e-11 Score=123.29 Aligned_cols=290 Identities=16% Similarity=0.150 Sum_probs=186.8
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc-cCCHHHHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE-KGGLICLQK 188 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~ 188 (445)
|..+.+.|-|..-++.+... .+.+++.|..|+|.|||||+.+++. ....-..+.|+. .++ ..+......
T Consensus 15 P~~~~~~v~R~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~ 84 (894)
T COG2909 15 PVRPDNYVVRPRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLS 84 (894)
T ss_pred CCCcccccccHHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHH
Confidence 34467788888776666553 3578999999999999999999988 444556789987 433 456667777
Q ss_pred HHHHHHhCCCCCCC------------cChhhhHHHHHHHHc--cCcEEEEEcCCCCH------HHHHHhcCCCCCcCccc
Q 045345 189 QLLSELLKLPDTST------------WNVYDGLKMIGSRLR--YRKVLLIVDAAFDL------KQLESLAGKHEWFDEHL 248 (445)
Q Consensus 189 ~il~~l~~~~~~~~------------~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~------~~l~~l~~~~~~~~~~v 248 (445)
.++..+....+... .+.......+..-+. .+|+.|||||..-. .-++.++...+. +-.+
T Consensus 85 yLi~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~-~l~l 163 (894)
T COG2909 85 YLIAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPE-NLTL 163 (894)
T ss_pred HHHHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCC-CeEE
Confidence 77777663322221 223334444444343 47899999998622 235555433332 4555
Q ss_pred ccccCCCce------------EEc----CCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhC
Q 045345 249 LMTHGVDEV------------HKL----KVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLY 312 (445)
Q Consensus 249 l~t~~~~~~------------~~l----~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 312 (445)
+++++.... .++ =.++.+|+.++|.... +.. -....++.+.+.++|.+-|+..++-.++
T Consensus 164 vv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~-~l~----Ld~~~~~~L~~~teGW~~al~L~aLa~~ 238 (894)
T COG2909 164 VVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG-SLP----LDAADLKALYDRTEGWAAALQLIALALR 238 (894)
T ss_pred EEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC-CCC----CChHHHHHHHhhcccHHHHHHHHHHHcc
Confidence 555553322 222 2488999999997765 111 1123478899999999999999998887
Q ss_pred CC-CHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCCCCCHHHHHHHHHhCCCCchhcHHHHhhcCc
Q 045345 313 GK-TTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYRGEDRDYVTKIIDYCDFDPVIGIRVLIDKSL 391 (445)
Q Consensus 313 ~~-~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~sL 391 (445)
.. +.+. ....+......-..-..+--++.||++.|..++.+|++ ..++-+...++.+. .+....+++|.+++|
T Consensus 239 ~~~~~~q---~~~~LsG~~~~l~dYL~eeVld~Lp~~l~~FLl~~svl-~~f~~eL~~~Ltg~--~ng~amLe~L~~~gL 312 (894)
T COG2909 239 NNTSAEQ---SLRGLSGAASHLSDYLVEEVLDRLPPELRDFLLQTSVL-SRFNDELCNALTGE--ENGQAMLEELERRGL 312 (894)
T ss_pred CCCcHHH---HhhhccchHHHHHHHHHHHHHhcCCHHHHHHHHHHHhH-HHhhHHHHHHHhcC--CcHHHHHHHHHhCCC
Confidence 43 2222 11112211111112234556899999999999999998 33444444444332 234556899999998
Q ss_pred eE--Ec-cCCeEEccHHHHHHHHHHHhhcCCCC
Q 045345 392 IE--IS-NGNRLRMHNLLQEMGQQIVKRQSPKE 421 (445)
Q Consensus 392 i~--~~-~~~~~~mHdlvr~~ar~~~~~e~~~~ 421 (445)
.- .+ +++.|+.|.+..+|-++..+.+.+..
T Consensus 313 Fl~~Ldd~~~WfryH~LFaeFL~~r~~~~~~~~ 345 (894)
T COG2909 313 FLQRLDDEGQWFRYHHLFAEFLRQRLQRELAAR 345 (894)
T ss_pred ceeeecCCCceeehhHHHHHHHHhhhccccCCc
Confidence 75 33 26779999999999999998865444
No 11
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.41 E-value=2.2e-10 Score=112.49 Aligned_cols=274 Identities=16% Similarity=0.084 Sum_probs=158.1
Q ss_pred cccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCccc------cceeeehhhhhhccCC
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE------ASSFLANVREISEKGG 182 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~ 182 (445)
..|+.|+||+.++++|...+.. .....+.+.|+|++|+|||++++.+++.+..... ..+|+. .....+
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~ 87 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDT 87 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCC
Confidence 3456899999999999998864 1223457899999999999999999987643322 234444 233345
Q ss_pred HHHHHHHHHHHHhC--CCC-CCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCH-----HHHHHhcCC--CCC---cCcc
Q 045345 183 LICLQKQLLSELLK--LPD-TSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDL-----KQLESLAGK--HEW---FDEH 247 (445)
Q Consensus 183 ~~~l~~~il~~l~~--~~~-~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~-----~~l~~l~~~--~~~---~~~~ 247 (445)
...++..++.++.. ... ....+..+....+.+.+. +++++||||+++.. +.+..+... ... ..-.
T Consensus 88 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~ 167 (365)
T TIGR02928 88 LYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVG 167 (365)
T ss_pred HHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEE
Confidence 56777788887742 111 112233444455555553 56789999999866 123333221 000 0000
Q ss_pred -ccccc--------------CC-CceEEcCCCCHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 248 -LLMTH--------------GV-DEVHKLKVLHDDEALQLFCKQAF---KTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 248 -vl~t~--------------~~-~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
+.++. +. ...+.+++++.++..+++..++- ......++..+.+..++..+.|.|..+..+.
T Consensus 168 lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l 247 (365)
T TIGR02928 168 VIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLL 247 (365)
T ss_pred EEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHH
Confidence 11111 11 24578999999999999988763 2222233334455667777788885443322
Q ss_pred Hh-h----C-C---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCC----CCCHHHHHH----H
Q 045345 309 SF-L----Y-G---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYR----GEDRDYVTK----I 371 (445)
Q Consensus 309 ~~-L----~-~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~----~~~~~~l~~----~ 371 (445)
.. . . + -+.+....+.+.+. ......++..||.+++.++..++.... .+....+.. +
T Consensus 248 ~~a~~~a~~~~~~~it~~~v~~a~~~~~-------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~ 320 (365)
T TIGR02928 248 RVAGEIAEREGAERVTEDHVEKAQEKIE-------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEV 320 (365)
T ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence 11 1 1 1 23344444444331 233455678899988888877663321 233333333 1
Q ss_pred HHhCCCCc------hhcHHHHhhcCceEEc
Q 045345 372 IDYCDFDP------VIGIRVLIDKSLIEIS 395 (445)
Q Consensus 372 ~~~~~~~~------~~~l~~L~~~sLi~~~ 395 (445)
....+..+ ...+..|...|||+..
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 321 CEDIGVDPLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred HHhcCCCCCcHHHHHHHHHHHHhcCCeEEE
Confidence 12223222 3468999999999964
No 12
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.31 E-value=2.2e-11 Score=111.62 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=95.1
Q ss_pred ccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHH------HHH
Q 045345 116 LVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICL------QKQ 189 (445)
Q Consensus 116 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l------~~~ 189 (445)
|+||+.+++.|.+++..+ ..+.+.|+|+.|+|||+|++.+.+.........+|+........ ...... ...
T Consensus 1 F~gR~~el~~l~~~l~~~--~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG--PSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADE 77 (234)
T ss_dssp S-S-HHHHHHHHHCHHH----SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCH
T ss_pred CCCHHHHHHHHHHHHHhh--cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHH
Confidence 799999999999999853 34688899999999999999999987554334555542211110 001111 111
Q ss_pred HHHHHhCC-CC--------CCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCHH-----------HHHHhcCC---CCCc
Q 045345 190 LLSELLKL-PD--------TSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDLK-----------QLESLAGK---HEWF 244 (445)
Q Consensus 190 il~~l~~~-~~--------~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----------~l~~l~~~---~~~~ 244 (445)
+...+... .. ............+.+.+. +++++||+||++... .+..++.. ...
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~- 156 (234)
T PF01637_consen 78 LSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQN- 156 (234)
T ss_dssp CHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TT-
T ss_pred HHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCC-
Confidence 11112110 00 011222333344444443 345999999987554 12222211 111
Q ss_pred Cccccccc----------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 245 DEHLLMTH----------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 245 ~~~vl~t~----------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
-..|+..+ .....+.|++|+.+++.+++....-.. ..-+...+...+|+..+||+|..|..
T Consensus 157 ~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 157 VSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp EEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 01111111 112338999999999999998865222 11012345679999999999998865
No 13
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.22 E-value=1e-09 Score=103.04 Aligned_cols=168 Identities=20% Similarity=0.171 Sum_probs=100.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR- 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~- 215 (445)
.++++|+|++|+|||||++.+++.+...-...+++. ....+...+...++..++.... ..+.......+...
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l 115 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFL 115 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHH
Confidence 458899999999999999999987653211122322 1223455667777766653321 12222222233222
Q ss_pred ----HccCcEEEEEcCCCCH--HHHHH---hcCCCC-CcC-cc-cccc-----------------cCCCceEEcCCCCHH
Q 045345 216 ----LRYRKVLLIVDAAFDL--KQLES---LAGKHE-WFD-EH-LLMT-----------------HGVDEVHKLKVLHDD 266 (445)
Q Consensus 216 ----l~~~~~LlVlDdv~~~--~~l~~---l~~~~~-~~~-~~-vl~t-----------------~~~~~~~~l~~L~~~ 266 (445)
..+++.+||+||++.. ..++. +..... ... .. +++. .+....+.+++|+.+
T Consensus 116 ~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 116 IEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 2568899999999854 23333 221110 000 00 1111 112345789999999
Q ss_pred HHHHHHHHhhcCCC--CCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 267 EALQLFCKQAFKTN--QPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 267 ea~~Lf~~~a~~~~--~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
|..+++...+.... ....-..+..+.|++.++|+|..|..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999887653221 1112335788999999999999999998775
No 14
>COG3903 Predicted ATPase [General function prediction only]
Probab=99.10 E-value=1.6e-10 Score=109.54 Aligned_cols=272 Identities=20% Similarity=0.258 Sum_probs=178.7
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
..+.+.++|+|||||||++-++.. +...|....|+.+...++++.-+. -.+...++ ... .+-+.....+...
T Consensus 13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~~~v~---~~~ag~~g-l~~---~~g~~~~~~~~~~ 84 (414)
T COG3903 13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDPALVF---PTLAGALG-LHV---QPGDSAVDTLVRR 84 (414)
T ss_pred hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCchhHhH---HHHHhhcc-ccc---ccchHHHHHHHHH
Confidence 357999999999999999999999 888899888887666555433222 22222222 111 1112234456777
Q ss_pred HccCcEEEEEcCCCCHHH-----HHHhcCCCCCcCcccccccC------CCceEEcCCCCHH-HHHHHHHHhhcCCC---
Q 045345 216 LRYRKVLLIVDAAFDLKQ-----LESLAGKHEWFDEHLLMTHG------VDEVHKLKVLHDD-EALQLFCKQAFKTN--- 280 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~~~-----l~~l~~~~~~~~~~vl~t~~------~~~~~~l~~L~~~-ea~~Lf~~~a~~~~--- 280 (445)
..+++.++|+||...... +..+..... ...++.|.+ .+..+.+++|+.. ++.++|...+....
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~--~~~~~atsre~~l~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f 162 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACP--RLAILATSREAILVAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF 162 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccch--hhhhHHHhHhhhcccccccccCCccccCCchhHHHHHHHHHhccce
Confidence 788999999999876532 333333333 223333332 3456788888876 79999887663221
Q ss_pred CCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHH----Hhc------CCchhHHHHHHHhhcCCcHhHH
Q 045345 281 QPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKR----LER------ESENEILDILKISFDGLRETEK 350 (445)
Q Consensus 281 ~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~----l~~------~~~~~i~~~l~~s~~~L~~~~k 350 (445)
............|++...|.||+|..+++..+.....+....+.. +.. .........+..||.-|+..++
T Consensus 163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~ 242 (414)
T COG3903 163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER 242 (414)
T ss_pred eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence 122344567888999999999999999999887554443333222 222 1135667889999999999999
Q ss_pred HHHhhhhccCCCCCHHHHHHHHHhC-----CCCchhcHHHHhhcCceEEcc---CCeEEccHHHHHHHHHHHhhc
Q 045345 351 KIFLDIACFYRGEDRDYVTKIIDYC-----DFDPVIGIRVLIDKSLIEISN---GNRLRMHNLLQEMGQQIVKRQ 417 (445)
Q Consensus 351 ~~~~~la~f~~~~~~~~l~~~~~~~-----~~~~~~~l~~L~~~sLi~~~~---~~~~~mHdlvr~~ar~~~~~e 417 (445)
-.|..++.|..+|..+......... .+.....+-.|+++|++...+ .-+|+.-.-++.|+.+.+.+.
T Consensus 243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999998887333332222 222344677899999987543 234666666777776666544
No 15
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.98 E-value=1.5e-08 Score=100.74 Aligned_cols=170 Identities=21% Similarity=0.256 Sum_probs=99.0
Q ss_pred cccccccccchhHHH---HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNT---LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....++||.+..+.. |..++.. .....+.|+|++|+||||||+.+++.....|.. +.. . ..+... .
T Consensus 9 ~~l~d~vGq~~~v~~~~~L~~~i~~--~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a---~--~~~~~~-i 77 (413)
T PRK13342 9 KTLDEVVGQEHLLGPGKPLRRMIEA--GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSA---V--TSGVKD-L 77 (413)
T ss_pred CCHHHhcCcHHHhCcchHHHHHHHc--CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eec---c--cccHHH-H
Confidence 345679999888766 7777763 345578899999999999999999876544321 110 0 011111 1
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHH-HccCcEEEEEcCCCCH--HHHHHhcCCCCCcCccccc-cc-----------
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSR-LRYRKVLLIVDAAFDL--KQLESLAGKHEWFDEHLLM-TH----------- 252 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~l~~l~~~~~~~~~~vl~-t~----------- 252 (445)
..++ ...... ..+++.+|+||+++.. .+.+.++.........++. |+
T Consensus 78 r~ii------------------~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 78 REVI------------------EEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHHH------------------HHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCCCChhhhccHHH
Confidence 1111 111111 1457789999999844 3444443222111111110 11
Q ss_pred -CCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 253 -GVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 253 -~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
.....+.+.+|+.++..+++.+.+..... ...-..+....|++.++|.|..+..+..
T Consensus 140 ~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 01256899999999999999876532111 0022346678899999999987654443
No 16
>PF01582 TIR: TIR domain; InterPro: IPR000157 In Drosophila melanogaster the Toll protein is involved in establishment of dorso-ventral polarity in the embryo. In addition, members of the Toll family play a key role in innate antibacterial and antifungal immunity in insects as well as in mammals. These proteins are type-I transmembrane receptors that share an intracellular 200 residue domain with the interleukin-1 receptor (IL-1R), the Toll/IL-1R homologous region (TIR). The similarity between Toll-like receptors (LTRs) and IL-1R is not restricted to sequence homology since these proteins also share a similar signalling pathway. They both induce the activation of a Rel type transcription factor via an adaptor protein and a protein kinase []. Interestingly, MyD88, a cytoplasmic adaptor protein found in mammals, contains a TIR domain associated to a DEATH domain (see IPR000488 from INTERPRO) [, , ]. Besides the mammalian and Drosophila melanogaster proteins, a TIR domain is also found in a number of plant proteins implicated in host defence []. As MyD88, these proteins are cytoplasmic. Site directed mutagenesis and deletion analysis have shown that the TIR domain is essential for Toll and IL-1R activities. Sequence analysis have revealed the presence of three highly conserved regions among the different members of the family: box 1 (FDAFISY), box 2 (GYKLC-RD-PG), and box 3 (a conserved W surrounded by basic residues). It has been proposed that boxes 1 and 2 are involved in the binding of proteins involved in signalling, whereas box 3 is primarily involved in directing localization of receptor, perhaps through interactions with cytoskeletal elements [].; GO: 0005515 protein binding, 0007165 signal transduction, 0005622 intracellular; PDB: 3J0A_A 2J67_B 3JRN_A 1FYV_A 1O77_D 1FYX_A 1FYW_A 3OZI_B 1T3G_B 2JS7_A ....
Probab=98.96 E-value=1.5e-10 Score=97.42 Aligned_cols=73 Identities=34% Similarity=0.523 Sum_probs=61.1
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCCcccc-cccchHHHHHHHhHHhhhhc--HHHHHHHHHHHH
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVR-KQTASFGEAFSKHEETFRMN--IEKVQKWRDALK 73 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~ps~vr-~~~~~~~~~~~~~~~~~~~~--~~~~~~w~~al~ 73 (445)
||++|.||+.||..+++|..+.+...+|+||||+|.|++++ .+.+.|...|..+....... ..+...|++++.
T Consensus 65 ~y~~s~wc~~el~~a~~~~~~~~~~~~Il~v~~~v~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~fW~~l~~ 140 (141)
T PF01582_consen 65 NYLSSEWCLFELQEALERLLEEGRDKLILPVFYDVSPSDVRPDQSLRFLLRFLTYLRWPDDDSREDRSWFWKKLRY 140 (141)
T ss_dssp HHHHHTHHHHHHHHHHHHHHCSTCTTEEEEESSSS-CHHCHTHHHHHHHHHCTHCEETSSSGGGGGHHHHHHHHHH
T ss_pred ccccccchhhhhhhhhhhccccccccceeeEeccCChhhcChhhhHHHHHHhhhheeCCCCCCccHHHHHHHHHhc
Confidence 58999999999999999997755348999999999999999 79999999998876665543 457889998864
No 17
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.88 E-value=4.5e-08 Score=101.29 Aligned_cols=273 Identities=15% Similarity=0.069 Sum_probs=145.3
Q ss_pred cccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCc-----cc--cceeeehhhhhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-----FE--ASSFLANVREISEK 180 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~--~~~~~~~~~~~~~~ 180 (445)
..|+.+.||+.++++|...|.. ++....++-|+|++|.|||++++.+.+.+... .+ ..+++. ....
T Consensus 752 YVPD~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~L 827 (1164)
T PTZ00112 752 VVPKYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNV 827 (1164)
T ss_pred cCCCcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCcc
Confidence 4567899999999999988864 22233567799999999999999998876322 12 123443 2233
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc---cCcEEEEEcCCCCHH-----HHHHhcCCCCCcC-------
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR---YRKVLLIVDAAFDLK-----QLESLAGKHEWFD------- 245 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~LlVlDdv~~~~-----~l~~l~~~~~~~~------- 245 (445)
.....+...|..++.+..+............+...+. ....+||||+++... .+-.+.......+
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIG 907 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIA 907 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEE
Confidence 4556667777777754443333333344444444442 234689999997432 1222211100001
Q ss_pred ------------cccccccCCCceEEcCCCCHHHHHHHHHHhhcCC--CCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 246 ------------EHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKT--NQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 246 ------------~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~--~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
.++....+ ...+..++++.++-.+++..++-.. ...+...+-+|+.++...|-.=.||.++-...
T Consensus 908 ISNdlDLperLdPRLRSRLg-~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 908 ISNTMDLPERLIPRCRSRLA-FGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred ecCchhcchhhhhhhhhccc-cccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 11111111 1235678899999999998877421 12223333333434444455555665554333
Q ss_pred CC--C---CHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCC-----CCCHHHHHH----HHH----
Q 045345 312 YG--K---TTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYR-----GEDRDYVTK----IID---- 373 (445)
Q Consensus 312 ~~--~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-----~~~~~~l~~----~~~---- 373 (445)
.. . ..+....+...+. ...+......||.+.|.+|..+..... +++...+-. +..
T Consensus 987 EikegskVT~eHVrkAleeiE-------~srI~e~IktLPlHqKLVLlALIlLlk~tg~~~i~TGEVYerYk~Lce~~Gk 1059 (1164)
T PTZ00112 987 ENKRGQKIVPRDITEATNQLF-------DSPLTNAINYLPWPFKMFLTCLIVELRMLNDFIIPYKKVLNRYKVLVETSGK 1059 (1164)
T ss_pred hhcCCCccCHHHHHHHHHHHH-------hhhHHHHHHcCCHHHHHHHHHHHHHHhhcCCCceeHHHHHHHHHHHHHhhhh
Confidence 21 1 1222333333221 122344456788888877765543322 133322222 222
Q ss_pred hCCCC-----chhcHHHHhhcCceEEc
Q 045345 374 YCDFD-----PVIGIRVLIDKSLIEIS 395 (445)
Q Consensus 374 ~~~~~-----~~~~l~~L~~~sLi~~~ 395 (445)
.-|.+ ....|.+|...|+|.+.
T Consensus 1060 ~iGv~plTqRV~d~L~eL~~LGIIl~e 1086 (1164)
T PTZ00112 1060 YIGMCSNNELFKIMLDKLVKMGILLIR 1086 (1164)
T ss_pred hcCCCCcHHHHHHHHHHHHhcCeEEec
Confidence 11222 23357889999998865
No 18
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.87 E-value=1.8e-08 Score=95.24 Aligned_cols=160 Identities=24% Similarity=0.292 Sum_probs=93.1
Q ss_pred ccccccchhH---HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 114 KDLVGMDSCW---NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 114 ~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
+++||.+.-+ .-|..++. ++......+||++|+||||||+.++......|...-=+ ..++.+
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~--~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkd----- 88 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVE--AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKD----- 88 (436)
T ss_pred HHhcChHhhhCCCchHHHHHh--cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHH-----
Confidence 4455544433 22333333 34566677999999999999999998766655431111 112222
Q ss_pred HHHHhCCCCCCCcChhhhHHHH-HHHHccCcEEEEEcCCC--CHHHHHHhcCCCCCcCccccc--ccC------------
Q 045345 191 LSELLKLPDTSTWNVYDGLKMI-GSRLRYRKVLLIVDAAF--DLKQLESLAGKHEWFDEHLLM--THG------------ 253 (445)
Q Consensus 191 l~~l~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~--~~~~l~~l~~~~~~~~~~vl~--t~~------------ 253 (445)
+...++.- .....+++.+|++|.|+ +..|-+.+++..... ..+++ |+.
T Consensus 89 --------------lr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G-~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 89 --------------LREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG-TIILIGATTENPSFELNPALLS 153 (436)
T ss_pred --------------HHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC-eEEEEeccCCCCCeeecHHHhh
Confidence 12222222 23345789999999997 556666676554432 11111 111
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHHhCCChHH
Q 045345 254 VDEVHKLKVLHDDEALQLFCKQAFKTN-----QPWKEYEQLSKYVVKYSGGLPLA 303 (445)
Q Consensus 254 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLa 303 (445)
...++.+++|+.++-.+++.+.+.... ....-.+++...++..++|=-.+
T Consensus 154 R~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 154 RARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 235789999999999999988432211 11112345667788888886543
No 19
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=3.7e-07 Score=88.54 Aligned_cols=272 Identities=17% Similarity=0.113 Sum_probs=159.7
Q ss_pred cccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICL 186 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l 186 (445)
..|..+.+|+.+++++...|.. ......-+.|+|.+|+|||+.++.+++++...... .+++. .....+...+
T Consensus 14 ~iP~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i 89 (366)
T COG1474 14 YIPEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQV 89 (366)
T ss_pred CCcccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHH
Confidence 3455699999999999988764 22223348899999999999999999987665443 35665 4556778888
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCHH-----HHHHhcCCCCCc---------------
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDLK-----QLESLAGKHEWF--------------- 244 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-----~l~~l~~~~~~~--------------- 244 (445)
...++..++..+. ......+....+.+.+. ++.+++|||+++... .+-.+.......
T Consensus 90 ~~~i~~~~~~~p~-~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~ 168 (366)
T COG1474 90 LSKILNKLGKVPL-TGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKF 168 (366)
T ss_pred HHHHHHHcCCCCC-CCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHH
Confidence 8899998873332 33444555666666664 478999999997432 222333222211
Q ss_pred ----CcccccccCCCceEEcCCCCHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHhCC-ChHHHHHHH--HhhCCC
Q 045345 245 ----DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQA---FKTNQPWKEYEQLSKYVVKYSGG-LPLALKVLG--SFLYGK 314 (445)
Q Consensus 245 ----~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~--~~L~~~ 314 (445)
+.++-...+. ..+..+|-+.+|-.+.+..++ |......+..-+++..++...+| -=.||..+- +.++++
T Consensus 169 ~~~ld~rv~s~l~~-~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~ 247 (366)
T COG1474 169 LDYLDPRVKSSLGP-SEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAER 247 (366)
T ss_pred HHHhhhhhhhccCc-ceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHh
Confidence 1122212111 236778888888888887766 34444444444555555555554 333443332 222220
Q ss_pred ------CHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCCCCCHHHHHHHH----HhCCC---Cchh
Q 045345 315 ------TTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYRGEDRDYVTKII----DYCDF---DPVI 381 (445)
Q Consensus 315 ------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~~~~~~l~~~~----~~~~~---~~~~ 381 (445)
+.+.-..+.... -...+.-.+..|+.+++..+..++..-.++....+-... ...+. ....
T Consensus 248 ~~~~~v~~~~v~~a~~~~-------~~~~~~~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ 320 (366)
T COG1474 248 EGSRKVSEDHVREAQEEI-------ERDVLEEVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSD 320 (366)
T ss_pred hCCCCcCHHHHHHHHHHh-------hHHHHHHHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHH
Confidence 111111111111 122334447888888888877766654445544443332 22333 2234
Q ss_pred cHHHHhhcCceEEc
Q 045345 382 GIRVLIDKSLIEIS 395 (445)
Q Consensus 382 ~l~~L~~~sLi~~~ 395 (445)
.+..|...|+|...
T Consensus 321 ii~~L~~lgiv~~~ 334 (366)
T COG1474 321 IISELEGLGIVSAS 334 (366)
T ss_pred HHHHHHhcCeEEee
Confidence 68889999999854
No 20
>PF05729 NACHT: NACHT domain
Probab=98.85 E-value=1.6e-08 Score=87.26 Aligned_cols=131 Identities=23% Similarity=0.294 Sum_probs=73.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc------ccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF------EASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKM 211 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~ 211 (445)
|++.|+|.+|+||||+++.++..+.... ...+|+. .+..........+...+....... ...... .
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~---~ 72 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPES----IAPIEE---L 72 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccc----hhhhHH---H
Confidence 5789999999999999999998754443 2233333 333332222223333333332211 111111 1
Q ss_pred HHH-HHccCcEEEEEcCCCCHHH-------------HHHhcCCCCCcCcccccccCC------------CceEEcCCCCH
Q 045345 212 IGS-RLRYRKVLLIVDAAFDLKQ-------------LESLAGKHEWFDEHLLMTHGV------------DEVHKLKVLHD 265 (445)
Q Consensus 212 l~~-~l~~~~~LlVlDdv~~~~~-------------l~~l~~~~~~~~~~vl~t~~~------------~~~~~l~~L~~ 265 (445)
+.. ....++++||||++++... +..+......-+.+++++++. ...+++.+|+.
T Consensus 73 ~~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~ 152 (166)
T PF05729_consen 73 LQELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSE 152 (166)
T ss_pred HHHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCH
Confidence 222 2257899999999974432 333333311114445555432 23589999999
Q ss_pred HHHHHHHHHhh
Q 045345 266 DEALQLFCKQA 276 (445)
Q Consensus 266 ~ea~~Lf~~~a 276 (445)
++..+++.+..
T Consensus 153 ~~~~~~~~~~f 163 (166)
T PF05729_consen 153 EDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHh
Confidence 99999987654
No 21
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.80 E-value=1.9e-08 Score=88.63 Aligned_cols=50 Identities=30% Similarity=0.405 Sum_probs=35.2
Q ss_pred cccccchhHHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 115 DLVGMDSCWNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.||||+.+++++...|.. .....+.+.|+|++|+|||+|.++++..+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 489999999999999953 33446899999999999999999999887665
No 22
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.73 E-value=2.3e-07 Score=82.03 Aligned_cols=168 Identities=20% Similarity=0.201 Sum_probs=89.4
Q ss_pred ccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
..++|||.+.-+..+.-++.. .......+.+||++|+||||||.-+++.....|. +.. . ..+
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s------g-~~i----- 86 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS------G-PAI----- 86 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE------C-CC------
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc------c-hhh-----
Confidence 457899999999888766542 2334677889999999999999999998877663 121 0 000
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHhcCCCCCc-----------Cc---------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESLAGKHEWF-----------DE--------- 246 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l~~~~~~~-----------~~--------- 246 (445)
....++...+ ..+ +++-+|.+|+++.. .+-+.+.+....+ .+
T Consensus 87 --------------~k~~dl~~il-~~l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~F 150 (233)
T PF05496_consen 87 --------------EKAGDLAAIL-TNL-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPF 150 (233)
T ss_dssp ---------------SCHHHHHHH-HT---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----
T ss_pred --------------hhHHHHHHHH-Hhc-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCc
Confidence 0011111111 112 24457888999743 3333332211111 00
Q ss_pred -cccccc-----------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhC
Q 045345 247 -HLLMTH-----------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLY 312 (445)
Q Consensus 247 -~vl~t~-----------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 312 (445)
-+-.|+ +..-+.+++..+.+|-.++..+.+..-+. +-..+.+.+|+..+.|-|.-..-+-..++
T Consensus 151 TligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiAnrll~rvr 226 (233)
T PF05496_consen 151 TLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIANRLLRRVR 226 (233)
T ss_dssp EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHHHHHHHHHC
T ss_pred eEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 000111 12234589999999999999877733332 23457789999999999976655544443
No 23
>PRK06893 DNA replication initiation factor; Validated
Probab=98.72 E-value=2.7e-07 Score=84.25 Aligned_cols=170 Identities=14% Similarity=0.153 Sum_probs=93.0
Q ss_pred CCCccccccccccchhHHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHH
Q 045345 107 PAKSEIFKDLVGMDSCWNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLIC 185 (445)
Q Consensus 107 ~~~~~~~~~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (445)
..+....++|+|-+... .+..+... .....+.+.|+|++|+|||+|+.++++....+...+.|+.. ... ..
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~----~~~---~~ 80 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL----SKS---QY 80 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH----HHh---hh
Confidence 33445567788654322 22222211 12234678899999999999999999986555555666652 100 00
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH---HHHH----HhcCCCCCcCccc-cccc-----
Q 045345 186 LQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL---KQLE----SLAGKHEWFDEHL-LMTH----- 252 (445)
Q Consensus 186 l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~l~----~l~~~~~~~~~~v-l~t~----- 252 (445)
.... +.+.+. +.-+|+|||++.. ..++ .+......-+..+ ++|+
T Consensus 81 ~~~~----------------------~~~~~~-~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 81 FSPA----------------------VLENLE-QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred hhHH----------------------HHhhcc-cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 0000 111111 2348999999753 1221 1111000001121 2222
Q ss_pred -------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 253 -------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 253 -------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
+...++++++++.++.++++.+.+...... -.++...-|++.+.|..-.+..+-.
T Consensus 138 ~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~~~l~ 205 (229)
T PRK06893 138 ALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLFDALD 205 (229)
T ss_pred HccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHH
Confidence 223478999999999999999888644322 2235677788888877766654443
No 24
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.70 E-value=2.7e-07 Score=84.14 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=91.9
Q ss_pred cccccccc--cchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVG--MDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vG--r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
...++|++ .+..++.+.+++.. ...+.+.|+|++|+|||+||+.+++.........+++. ....... ..
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~------~~ 82 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG--KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA------DP 82 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh------HH
Confidence 34456763 44467777776542 23568889999999999999999987544333444554 1111100 00
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-------HHHHhcCCCCCcCcccccccC--------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-------QLESLAGKHEWFDEHLLMTHG-------- 253 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~l~~l~~~~~~~~~~vl~t~~-------- 253 (445)
. +...+.+ .-+|||||++... .+-.+.......+..+++++.
T Consensus 83 ~----------------------~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~ 139 (226)
T TIGR03420 83 E----------------------VLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPL 139 (226)
T ss_pred H----------------------HHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCc
Confidence 1 1111222 2388899997432 122211100000112222211
Q ss_pred ----------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHh
Q 045345 254 ----------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSF 310 (445)
Q Consensus 254 ----------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~ 310 (445)
....+++++++.++-..++...+-..... -..+....|++.++|+|..+..+...
T Consensus 140 ~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~--~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 140 RLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQ--LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred ccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 12468899999988888887654222211 22355677888899999877766443
No 25
>PTZ00202 tuzin; Provisional
Probab=98.66 E-value=2.9e-07 Score=88.71 Aligned_cols=106 Identities=16% Similarity=0.198 Sum_probs=72.7
Q ss_pred CCccccccccccchhHHHHHhhhccCCC-CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHH
Q 045345 108 AKSEIFKDLVGMDSCWNTLRFLMDKEPY-GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICL 186 (445)
Q Consensus 108 ~~~~~~~~~vGr~~~l~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 186 (445)
..|.....|+||+.++.+|...|...+. ..+++.|.|++|+|||||++.+..... ...++.+. .+..++
T Consensus 256 ~lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNp------rg~eEl 325 (550)
T PTZ00202 256 SAPAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDV------RGTEDT 325 (550)
T ss_pred CCCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECC------CCHHHH
Confidence 4456778999999999999999975332 356999999999999999999987654 22444432 256889
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----c-cCcEEEEEc
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRL-----R-YRKVLLIVD 226 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~-~~~~LlVlD 226 (445)
+..++.+++...... ..++...+.+.+ . +++.+||+-
T Consensus 326 Lr~LL~ALGV~p~~~---k~dLLrqIqeaLl~~~~e~GrtPVLII~ 368 (550)
T PTZ00202 326 LRSVVKALGVPNVEA---CGDLLDFISEACRRAKKMNGETPLLVLK 368 (550)
T ss_pred HHHHHHHcCCCCccc---HHHHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 999999998532222 223333333332 2 566666653
No 26
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.66 E-value=1.6e-06 Score=84.21 Aligned_cols=188 Identities=15% Similarity=0.137 Sum_probs=97.4
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc-cc-ceeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF-EA-SSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~-~~~~~~~~~~~~~~~~~~l~~ 188 (445)
.....++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+.... .. .+++. ..+.... ....+..
T Consensus 12 ~~~~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~-~~~~~~~ 87 (337)
T PRK12402 12 ALLEDILGQDEVVERLSRAVDSP--NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ-GKKYLVE 87 (337)
T ss_pred CcHHHhcCCHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc-chhhhhc
Confidence 34567999999999999988743 344678999999999999999998764332 21 22332 1111000 0000000
Q ss_pred --HHHHHHhCCCCCCCcChhhhHHHH-HHHH-----ccCcEEEEEcCCCCHH--H---HHHhcCCCCCcCccccccc---
Q 045345 189 --QLLSELLKLPDTSTWNVYDGLKMI-GSRL-----RYRKVLLIVDAAFDLK--Q---LESLAGKHEWFDEHLLMTH--- 252 (445)
Q Consensus 189 --~il~~l~~~~~~~~~~~~~~~~~l-~~~l-----~~~~~LlVlDdv~~~~--~---l~~l~~~~~~~~~~vl~t~--- 252 (445)
.....+........ ........+ .... ...+-+||+||++... . +..++..... +..++.++
T Consensus 88 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~-~~~~Il~~~~~ 165 (337)
T PRK12402 88 DPRFAHFLGTDKRIRS-SKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSR-TCRFIIATRQP 165 (337)
T ss_pred Ccchhhhhhhhhhhcc-chHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccC-CCeEEEEeCCh
Confidence 00000000000000 001111111 1111 1334589999997442 1 2222221111 11121111
Q ss_pred --------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 253 --------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 253 --------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
.....+++.+++.++..+++...+...... -..+.+..+++.++|.+-.+..
T Consensus 166 ~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 166 SKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred hhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 112457889999999999888766332222 2245678899999998766543
No 27
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.65 E-value=7.9e-08 Score=79.57 Aligned_cols=90 Identities=22% Similarity=0.220 Sum_probs=62.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-----cccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-----FEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKM 211 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~ 211 (445)
.+.+.|+|++|+|||+++..+++.+... -...+|+. .........+...++..+...... ..+.......
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~-~~~~~~l~~~ 78 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKS-RQTSDELRSL 78 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSS-TS-HHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccc-cCCHHHHHHH
Confidence 4688999999999999999999876442 23455666 444447888899999988754433 3456666777
Q ss_pred HHHHHccCcE-EEEEcCCCCH
Q 045345 212 IGSRLRYRKV-LLIVDAAFDL 231 (445)
Q Consensus 212 l~~~l~~~~~-LlVlDdv~~~ 231 (445)
+.+.+...+. +||+|+++..
T Consensus 79 ~~~~l~~~~~~~lviDe~~~l 99 (131)
T PF13401_consen 79 LIDALDRRRVVLLVIDEADHL 99 (131)
T ss_dssp HHHHHHHCTEEEEEEETTHHH
T ss_pred HHHHHHhcCCeEEEEeChHhc
Confidence 7777776554 9999999875
No 28
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.65 E-value=2.2e-06 Score=82.44 Aligned_cols=173 Identities=15% Similarity=0.106 Sum_probs=96.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....+++|++..++.+..++..+ ..+.+.|+|++|+||||+|+.+++.+........++. +. .+...+...+. ..
T Consensus 14 ~~~~~~~g~~~~~~~l~~~i~~~--~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~~~~~-~~ 88 (319)
T PRK00440 14 RTLDEIVGQEEIVERLKSYVKEK--NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGIDVIR-NK 88 (319)
T ss_pred CcHHHhcCcHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccchHHHH-HH
Confidence 34567999999999999988743 3345789999999999999999987533211111221 00 11111111111 11
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--H---HHHHhcCCCCCcCcccccccC----------CC
Q 045345 191 LSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--K---QLESLAGKHEWFDEHLLMTHG----------VD 255 (445)
Q Consensus 191 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~---~l~~l~~~~~~~~~~vl~t~~----------~~ 255 (445)
+..+....+ .....+-+|++|+++.. + .+..+.........-++++.. ..
T Consensus 89 i~~~~~~~~---------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~ 153 (319)
T PRK00440 89 IKEFARTAP---------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRC 153 (319)
T ss_pred HHHHHhcCC---------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHh
Confidence 111110000 00123568999998743 2 233332221111112222211 12
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
..+++.+++.++....+...+...+.. -..+.+..+++.++|.+.-+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~--i~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIE--ITDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 357899999999988888776433321 123567889999999987643
No 29
>PLN03025 replication factor C subunit; Provisional
Probab=98.63 E-value=4.3e-06 Score=80.37 Aligned_cols=173 Identities=16% Similarity=0.139 Sum_probs=95.2
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cCccccceeeehhhhhhccCCHHHHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
|....+++|.+..++.|..++..+ ..+.+.++|++|+||||+|..+++.+ ...|...+.-.+ .+...+... .+
T Consensus 9 P~~l~~~~g~~~~~~~L~~~~~~~--~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~~~-vr 82 (319)
T PLN03025 9 PTKLDDIVGNEDAVSRLQVIARDG--NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGIDV-VR 82 (319)
T ss_pred CCCHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccHHH-HH
Confidence 345577999999999998887643 34457799999999999999999875 333322111111 111112221 11
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HH---HHHhcCCCCCcCcccccccC----------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQ---LESLAGKHEWFDEHLLMTHG---------- 253 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~---l~~l~~~~~~~~~~vl~t~~---------- 253 (445)
.++......... ...++.-++|||+++.. .. +............-++++..
T Consensus 83 ~~i~~~~~~~~~--------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S 148 (319)
T PLN03025 83 NKIKMFAQKKVT--------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS 148 (319)
T ss_pred HHHHHHHhcccc--------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH
Confidence 111111100000 00134669999999843 22 22222221110111111111
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 254 VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 254 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
....+++++++.++..+.+...+-..+..- ..+....|++.++|-...+
T Consensus 149 Rc~~i~f~~l~~~~l~~~L~~i~~~egi~i--~~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 149 RCAIVRFSRLSDQEILGRLMKVVEAEKVPY--VPEGLEAIIFTADGDMRQA 197 (319)
T ss_pred hhhcccCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 124688999999999988887764333221 1355778899998877544
No 30
>PRK04195 replication factor C large subunit; Provisional
Probab=98.61 E-value=2.1e-06 Score=87.19 Aligned_cols=171 Identities=17% Similarity=0.156 Sum_probs=99.9
Q ss_pred cccccccccchhHHHHHhhhccC--CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKE--PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....+++|.+..++.|..++..- ....+.+.|+|++|+||||+|..+++.+. |+ .+-+. .+...... ...
T Consensus 11 ~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~r~~~-~i~ 82 (482)
T PRK04195 11 KTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQRTAD-VIE 82 (482)
T ss_pred CCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----ccccccHH-HHH
Confidence 44577999999999999988642 11267899999999999999999999763 22 11121 12211111 222
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH------HHHHh---cCCCCCcCccccccc-------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK------QLESL---AGKHEWFDEHLLMTH------- 252 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~l~~l---~~~~~~~~~~vl~t~------- 252 (445)
.++....... .....++-+||||+++... .+..+ +.... ...++++.
T Consensus 83 ~~i~~~~~~~---------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~--~~iIli~n~~~~~~~ 145 (482)
T PRK04195 83 RVAGEAATSG---------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAK--QPIILTANDPYDPSL 145 (482)
T ss_pred HHHHHhhccC---------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCC--CCEEEeccCccccch
Confidence 2222211100 0011367799999997542 12222 22111 11111111
Q ss_pred ----CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 253 ----GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 253 ----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
.....+++.+++.++....+...+....... ..+....|++.++|....+....
T Consensus 146 k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i--~~eaL~~Ia~~s~GDlR~ain~L 203 (482)
T PRK04195 146 RELRNACLMIEFKRLSTRSIVPVLKRICRKEGIEC--DDEALKEIAERSGGDLRSAINDL 203 (482)
T ss_pred hhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 1235688999999999988887764333221 24667889999998777654433
No 31
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.59 E-value=2.7e-06 Score=89.48 Aligned_cols=187 Identities=19% Similarity=0.125 Sum_probs=100.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-c-c-cceeeehh-hhhhccCCHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-F-E-ASSFLANV-REISEKGGLICL 186 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f-~-~~~~~~~~-~~~~~~~~~~~l 186 (445)
....++||-+..++.|...+..+. =...+.++|++|+||||+|+.+++.+... . . ..|..+.. ..+..... ..
T Consensus 13 ~tFddIIGQe~Iv~~LknaI~~~r-l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~-~D- 89 (944)
T PRK14949 13 ATFEQMVGQSHVLHALTNALTQQR-LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF-VD- 89 (944)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC-ce-
Confidence 445789999999999999887432 13456899999999999999999875432 1 0 01111100 00000000 00
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHH-HHccCcEEEEEcCCCCH--HHHHHhcC---C-CCC--c------Ccccccc
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGS-RLRYRKVLLIVDAAFDL--KQLESLAG---K-HEW--F------DEHLLMT 251 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~l~~l~~---~-~~~--~------~~~vl~t 251 (445)
+..+.........++......+.. -..++.-++|||+++.. ...+.|+. . ... | ...++.|
T Consensus 90 ----viEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~T 165 (944)
T PRK14949 90 ----LIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 165 (944)
T ss_pred ----EEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHH
Confidence 000000000011111111111111 12356779999999743 44444432 1 111 1 2222222
Q ss_pred c-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 252 H-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 252 ~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
. .....|++++|+.++..+.+.+.+-.... ....+.+..|++.++|.|.-+..
T Consensus 166 IlSRCq~f~fkpLs~eEI~~~L~~il~~EgI--~~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 166 VLSRCLQFNLKSLTQDEIGTQLNHILTQEQL--PFEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHHhheEEeCCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHH
Confidence 1 12367899999999999988876633221 12345678899999998864433
No 32
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.59 E-value=3.8e-06 Score=88.38 Aligned_cols=165 Identities=22% Similarity=0.277 Sum_probs=94.2
Q ss_pred cccccccccchhHH---HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWN---TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~---~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....+|+|.+..+. .+...+.. +....+.|+|++|+||||||+.+++.....|. .+.. .. .++..
T Consensus 25 ~tldd~vGQe~ii~~~~~L~~~i~~--~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna---~~--~~i~d-- 92 (725)
T PRK13341 25 RTLEEFVGQDHILGEGRLLRRAIKA--DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNA---VL--AGVKD-- 92 (725)
T ss_pred CcHHHhcCcHHHhhhhHHHHHHHhc--CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehh---hh--hhhHH--
Confidence 44567999998874 46666653 34556789999999999999999987655442 1110 00 01111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH--ccCcEEEEEcCCCC--HHHHHHhcCCCCCcCccccc--ccC--------
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRL--RYRKVLLIVDAAFD--LKQLESLAGKHEWFDEHLLM--THG-------- 253 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~--~~~l~~l~~~~~~~~~~vl~--t~~-------- 253 (445)
...........+ .+++.+|||||++. ..+.+.+++.... ...+++ |+.
T Consensus 93 -----------------ir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~-g~IiLI~aTTenp~~~l~~ 154 (725)
T PRK13341 93 -----------------LRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN-GTITLIGATTENPYFEVNK 154 (725)
T ss_pred -----------------HHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC-ceEEEEEecCCChHhhhhh
Confidence 111111111111 24667999999974 3444444432221 111111 110
Q ss_pred ----CCceEEcCCCCHHHHHHHHHHhhcC-----CCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 254 ----VDEVHKLKVLHDDEALQLFCKQAFK-----TNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 254 ----~~~~~~l~~L~~~ea~~Lf~~~a~~-----~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
...++.+++|+.++...++.+.+-. ......-.++....|++.+.|....+.
T Consensus 155 aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~ll 215 (725)
T PRK13341 155 ALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLL 215 (725)
T ss_pred HhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHH
Confidence 1346899999999999998876531 011112234567888899988765443
No 33
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.57 E-value=6.4e-06 Score=85.16 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=99.2
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+..++.|..++..+. -...+.++|..|+||||+|+.+++.+...-.. . ....+.......+
T Consensus 13 qtFdEVIGQe~Vv~~L~~aL~~gR-L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~----~-----~~PCG~C~sCr~I 82 (830)
T PRK07003 13 KDFASLVGQEHVVRALTHALDGGR-LHHAYLFTGTRGVGKTTLSRIFAKALNCETGV----T-----SQPCGVCRACREI 82 (830)
T ss_pred CcHHHHcCcHHHHHHHHHHHhcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCccCC----C-----CCCCcccHHHHHH
Confidence 455789999999999999987432 24566799999999999999999865321000 0 0000000011111
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHHH----HccCcEEEEEcCCCCHH--HHHHhcC---C-CCC--c------Cccc
Q 045345 191 LSE----LLKLPDTSTWNVYDGLKMIGSR----LRYRKVLLIVDAAFDLK--QLESLAG---K-HEW--F------DEHL 248 (445)
Q Consensus 191 l~~----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~~--~l~~l~~---~-~~~--~------~~~v 248 (445)
... +......+....++....+... ..++.-++|||+++... .++.|+. . ... | ..++
T Consensus 83 ~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KI 162 (830)
T PRK07003 83 DEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKI 162 (830)
T ss_pred hcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhc
Confidence 000 0000000111112211111111 12355689999998542 2333332 1 111 1 1222
Q ss_pred cccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCCh-HHHHHH
Q 045345 249 LMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLP-LALKVL 307 (445)
Q Consensus 249 l~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 307 (445)
+.|. .....++++.|+.++..+.+.+.+...... -..+....|++.++|.. -+|..+
T Consensus 163 p~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~--id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 163 PVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIA--FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred cchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 2221 123568999999999999998876333221 22456778999998865 455553
No 34
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.57 E-value=7.3e-06 Score=83.00 Aligned_cols=179 Identities=16% Similarity=0.134 Sum_probs=101.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc--Cccccceeeehhhh-hhc--cCCHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLANVRE-ISE--KGGLIC 185 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~-~~~--~~~~~~ 185 (445)
....+++|-+...+.|..++..+. -...+.++|++|+||||+|+.+++.+. ..+...|+.+.... +.. ..++.
T Consensus 11 ~~~~dvvGq~~v~~~L~~~i~~~~-l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~- 88 (504)
T PRK14963 11 ITFDEVVGQEHVKEVLLAALRQGR-LGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL- 88 (504)
T ss_pred CCHHHhcChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-
Confidence 345679999999999988887532 234668999999999999999998753 22333455432110 000 00000
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhcCC---CCCcCccccccc---
Q 045345 186 LQKQLLSELLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLAGK---HEWFDEHLLMTH--- 252 (445)
Q Consensus 186 l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~~~---~~~~~~~vl~t~--- 252 (445)
.+. .......+. +..+...+ .+++-++|||+++.. ..++.++.. ......-++.+.
T Consensus 89 -------el~---~~~~~~vd~-iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~ 157 (504)
T PRK14963 89 -------EID---AASNNSVED-VRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPE 157 (504)
T ss_pred -------Eec---ccccCCHHH-HHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChh
Confidence 000 000111111 11222222 245668999999843 334444321 111001111111
Q ss_pred -------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 253 -------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 253 -------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
.....+++.+++.++..+.+.+.+-..+... ..+.+..|++.++|.+.-+
T Consensus 158 kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i--~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 158 KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREA--EPEALQLVARLADGAMRDA 214 (504)
T ss_pred hCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 1235689999999999999988774333221 2456788999999998655
No 35
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.54 E-value=1.3e-05 Score=78.50 Aligned_cols=178 Identities=16% Similarity=0.179 Sum_probs=96.4
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc---cceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE---ASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....+++|.+..++.+...+..+. -...+.++|++|+||||+|+.+++.+..... ..|-.+ ...
T Consensus 13 ~~~~~iiGq~~~~~~l~~~~~~~~-~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c------------~~c 79 (363)
T PRK14961 13 QYFRDIIGQKHIVTAISNGLSLGR-IHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKC------------IIC 79 (363)
T ss_pred CchhhccChHHHHHHHHHHHHcCC-CCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCC------------HHH
Confidence 445789999999999998887432 2456789999999999999999987532110 001000 000
Q ss_pred HHHHHH----HhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCHH--HHHHhcC---CCCCcCccccccc-
Q 045345 188 KQLLSE----LLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDLK--QLESLAG---KHEWFDEHLLMTH- 252 (445)
Q Consensus 188 ~~il~~----l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~~--~l~~l~~---~~~~~~~~vl~t~- 252 (445)
.++... +...........++ ...+.+.+ .+++-++|+|+++... ..+.++. ..+..-.-+++++
T Consensus 80 ~~~~~~~~~d~~~~~~~~~~~v~~-ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~ 158 (363)
T PRK14961 80 KEIEKGLCLDLIEIDAASRTKVEE-MREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTD 158 (363)
T ss_pred HHHhcCCCCceEEecccccCCHHH-HHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 011000 00000000011111 11222222 2345699999998543 2333331 1111001111111
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
.....+++.+++.++..+.+...+...+.. -.++.+..|++.++|.|..+
T Consensus 159 ~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~--i~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 159 VEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESID--TDEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred hHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 113568999999999998888766332211 12356778999999988643
No 36
>PF14516 AAA_35: AAA-like domain
Probab=98.52 E-value=6.9e-05 Score=72.27 Aligned_cols=194 Identities=11% Similarity=0.094 Sum_probs=112.8
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc--cCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE--KGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~--~~~~~~l~~ 188 (445)
...+.+|+|...-+++.+.+... ...+.|.|+-.+|||+|...+.+.....--.+++++ +..... ..+......
T Consensus 8 ~~~~~Yi~R~~~e~~~~~~i~~~---G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~ 83 (331)
T PF14516_consen 8 LDSPFYIERPPAEQECYQEIVQP---GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLR 83 (331)
T ss_pred CCCCcccCchHHHHHHHHHHhcC---CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHH
Confidence 34567889996666666655531 348899999999999999999887654322334443 222221 234555555
Q ss_pred HHHHHHhCCCCC----------CCcChhhhHHHHHHHH---ccCcEEEEEcCCCCHHH----HHHhc-------CC----
Q 045345 189 QLLSELLKLPDT----------STWNVYDGLKMIGSRL---RYRKVLLIVDAAFDLKQ----LESLA-------GK---- 240 (445)
Q Consensus 189 ~il~~l~~~~~~----------~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~----l~~l~-------~~---- 240 (445)
.++..+...-.. ...+.......+.+.+ .+++++|+||+++..-. .+.++ ..
T Consensus 84 ~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~ 163 (331)
T PF14516_consen 84 WFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNN 163 (331)
T ss_pred HHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccC
Confidence 555444321110 0112222333344432 25899999999974321 11111 10
Q ss_pred CCCcCccccccc---------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 241 HEWFDEHLLMTH---------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 241 ~~~~~~~vl~t~---------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
..|-.-.++... .....++|++++.+|...|+..+-.. .. ....++|...+||+|.-+.
T Consensus 164 ~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~---~~---~~~~~~l~~~tgGhP~Lv~ 237 (331)
T PF14516_consen 164 PIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE---FS---QEQLEQLMDWTGGHPYLVQ 237 (331)
T ss_pred cccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc---CC---HHHHHHHHHHHCCCHHHHH
Confidence 011100000000 12245789999999999999876422 11 1228889999999999999
Q ss_pred HHHHhhCCC
Q 045345 306 VLGSFLYGK 314 (445)
Q Consensus 306 ~~~~~L~~~ 314 (445)
.++..+...
T Consensus 238 ~~~~~l~~~ 246 (331)
T PF14516_consen 238 KACYLLVEE 246 (331)
T ss_pred HHHHHHHHc
Confidence 999998663
No 37
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=1.1e-05 Score=82.31 Aligned_cols=187 Identities=13% Similarity=0.103 Sum_probs=100.0
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc-cceeeehhhhhhccCCHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE-ASSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
....++||-+..++.|.+.+..+. -...+.++|+.|+||||+|+.+++.+-..-. ..--+ .+...+.......
T Consensus 13 qtFddVIGQe~vv~~L~~al~~gR-LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-----~~~PCG~C~sC~~ 86 (700)
T PRK12323 13 RDFTTLVGQEHVVRALTHALEQQR-LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-----TAQPCGQCRACTE 86 (700)
T ss_pred CcHHHHcCcHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-----CCCCCcccHHHHH
Confidence 455789999999999999987432 2456789999999999999999987532100 00000 0000000000111
Q ss_pred HHHH----HhCCCCCCCcChhhhHHHHHHH----HccCcEEEEEcCCCCH--HHHHHhcCCCC---CcCcccccccC---
Q 045345 190 LLSE----LLKLPDTSTWNVYDGLKMIGSR----LRYRKVLLIVDAAFDL--KQLESLAGKHE---WFDEHLLMTHG--- 253 (445)
Q Consensus 190 il~~----l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~l~~l~~~~~---~~~~~vl~t~~--- 253 (445)
|... +......+...+++..+.+... ..++.-++|||+++.. ...+.|+.... ..-.-+++|+.
T Consensus 87 I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~k 166 (700)
T PRK12323 87 IDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQK 166 (700)
T ss_pred HHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHh
Confidence 1000 0000000111122222222111 1345679999999843 44555543221 10122222322
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
....+.++.++.++..+.+.+.+...... ...+....|++.++|.|.-..
T Consensus 167 LlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~--~d~eAL~~IA~~A~Gs~RdAL 223 (700)
T PRK12323 167 IPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIA--HEVNALRLLAQAAQGSMRDAL 223 (700)
T ss_pred hhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 12558999999999999888766332221 123456788999999996443
No 38
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.48 E-value=1.3e-05 Score=80.60 Aligned_cols=185 Identities=21% Similarity=0.212 Sum_probs=96.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-c--ccceeeeh-hhhhhc--cCCHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-F--EASSFLAN-VREISE--KGGLI 184 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f--~~~~~~~~-~~~~~~--~~~~~ 184 (445)
....++||.+.....|...+..+. -...+.++|++|+||||+|+.+++.+... - ...|-.+. ...... ...+.
T Consensus 11 ~~~~divGq~~i~~~L~~~i~~~~-l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~ 89 (472)
T PRK14962 11 KTFSEVVGQDHVKKLIINALKKNS-ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVI 89 (472)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccE
Confidence 345789999988888888777432 13467899999999999999998864321 0 00000000 000000 00000
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-----HccCcEEEEEcCCCCH--HHHHHhcCCCCCc--Ccc-ccccc--
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSR-----LRYRKVLLIVDAAFDL--KQLESLAGKHEWF--DEH-LLMTH-- 252 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~l~~l~~~~~~~--~~~-vl~t~-- 252 (445)
. .........+. +..+.+. ..+++-++|+|+++.. ...+.++...... ... ++.++
T Consensus 90 --------e---l~aa~~~gid~-iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 90 --------E---LDAASNRGIDE-IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred --------E---EeCcccCCHHH-HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 0 00000011111 1112222 2245679999999754 2333333211110 111 11111
Q ss_pred --------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCC-ChHHHHHHHHh
Q 045345 253 --------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGG-LPLALKVLGSF 310 (445)
Q Consensus 253 --------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~~~ 310 (445)
.....+++.+++.++....+...+...+.. -..+....|++.++| ++.++..+-..
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~--i~~eal~~Ia~~s~GdlR~aln~Le~l 222 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIE--IDREALSFIAKRASGGLRDALTMLEQV 222 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 122568899999999999888776332221 123567778887754 46677666543
No 39
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.46 E-value=1.2e-05 Score=78.31 Aligned_cols=190 Identities=14% Similarity=0.035 Sum_probs=99.5
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cCcc-ccceeeehhhhhhccCCHHHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEF-EASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f-~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
|....+++|.+...+.|.+.+..+. -...+.++|+.|+||+++|..+++.+ .+.- .......... .....+.....
T Consensus 15 P~~~~~iiGq~~~~~~L~~~~~~~r-l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~-~l~~~~~c~~c 92 (365)
T PRK07471 15 PRETTALFGHAAAEAALLDAYRSGR-LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT-SLAIDPDHPVA 92 (365)
T ss_pred CCchhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc-cccCCCCChHH
Confidence 4456789999999999999888532 24568899999999999999999874 2221 1000000000 00000000011
Q ss_pred HHHHHHH-------hC---CCC---CCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCC--HHHHHHhc---CCC-CC
Q 045345 188 KQLLSEL-------LK---LPD---TSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFD--LKQLESLA---GKH-EW 243 (445)
Q Consensus 188 ~~il~~l-------~~---~~~---~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~l~~l~---~~~-~~ 243 (445)
..+.... .. ... ...-.+++ +..+.+.+ .+.+.++|+|+++. ......++ ... ..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdq-iR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~ 171 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDE-VRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPAR 171 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHH-HHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCC
Confidence 1111000 00 000 00011222 23333333 24677999999974 33333332 222 11
Q ss_pred --c------Cccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 244 --F------DEHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 244 --~------~~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
+ ...++.|. .....+.+.+|+.++..+++...... .. .+....++..++|.|+....+.
T Consensus 172 ~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~~---~~---~~~~~~l~~~s~Gsp~~Al~ll 239 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGPD---LP---DDPRAALAALAEGSVGRALRLA 239 (365)
T ss_pred eEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhccc---CC---HHHHHHHHHHcCCCHHHHHHHh
Confidence 1 11222221 12457899999999999999875411 11 1223678999999998665443
No 40
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.45 E-value=4.4e-06 Score=76.24 Aligned_cols=168 Identities=20% Similarity=0.174 Sum_probs=87.7
Q ss_pred CCCcccccccc-ccchh-HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHH
Q 045345 107 PAKSEIFKDLV-GMDSC-WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLI 184 (445)
Q Consensus 107 ~~~~~~~~~~v-Gr~~~-l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 184 (445)
...+...++|+ |.... +..+..+... ....+.+.|+|++|+|||+||.++++.....-....++.... ..
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~~~-~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~-~~------ 82 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELAAG-PVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS-PL------ 82 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHHhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH-hH------
Confidence 33344456666 54443 3444444332 223467889999999999999999987533222334443110 00
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCc-cccccc------
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESL---AGKHEWFDE-HLLMTH------ 252 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~-~vl~t~------ 252 (445)
..+ .. ....-+||+||++.. .....+ ......... .++++.
T Consensus 83 ---~~~-----------------------~~-~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~ 135 (227)
T PRK08903 83 ---LAF-----------------------DF-DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLA 135 (227)
T ss_pred ---HHH-----------------------hh-cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHh
Confidence 000 00 112336777888632 111111 110000011 111111
Q ss_pred ---------C--CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 253 ---------G--VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 253 ---------~--~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
+ ....+++++|+.++-..++.+.+-..... -.++....+++.+.|++..+..+...+
T Consensus 136 ~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~--l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 136 LPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQ--LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 1 12568899999887777776544222211 223567778888999998887666554
No 41
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.45 E-value=9.9e-06 Score=80.38 Aligned_cols=182 Identities=15% Similarity=0.082 Sum_probs=99.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc---cceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE---ASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....++||-+..+..|..++..+. -...+.++|++|+||||+|+.+++.+-.... ..|..+. ....+.
T Consensus 15 ~~f~dvVGQe~iv~~L~~~i~~~r-i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~--------sC~~i~ 85 (484)
T PRK14956 15 QFFRDVIHQDLAIGALQNALKSGK-IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECT--------SCLEIT 85 (484)
T ss_pred CCHHHHhChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCc--------HHHHHH
Confidence 455789999999999999887432 1346789999999999999999987533211 0111110 000000
Q ss_pred HHHHHHHhCCC---CCCCcChhhhHHHHHH-HHccCcEEEEEcCCCC--HHHHHHhcCCCCCc--Ccc-cccccC-----
Q 045345 188 KQLLSELLKLP---DTSTWNVYDGLKMIGS-RLRYRKVLLIVDAAFD--LKQLESLAGKHEWF--DEH-LLMTHG----- 253 (445)
Q Consensus 188 ~~il~~l~~~~---~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~--~~~l~~l~~~~~~~--~~~-vl~t~~----- 253 (445)
......+.... .....++.+....+.. ...++.-++|||+++. .+.++.++.....- ... ++.|+.
T Consensus 86 ~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 86 KGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIP 165 (484)
T ss_pred ccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhcc
Confidence 00000000000 0011111111111211 1235667999999984 34455554222110 111 112211
Q ss_pred -----CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHH
Q 045345 254 -----VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLA 303 (445)
Q Consensus 254 -----~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa 303 (445)
....|.+.+++.++..+.+.+.+-..+.. -..+....|++.++|.+.-
T Consensus 166 ~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~--~e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 166 ETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQ--YDQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred HHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCChHHH
Confidence 12468999999999988888776332221 2345678899999999853
No 42
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.44 E-value=1.7e-06 Score=84.79 Aligned_cols=163 Identities=14% Similarity=0.149 Sum_probs=91.4
Q ss_pred cccccccccchhHHHHHhhhccC--C---------CCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKE--P---------YGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE 179 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~--~---------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 179 (445)
....++.|++..+++|...+... . ...+-+.|+|++|+|||+||+++++.....|-....
T Consensus 119 ~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~--------- 189 (364)
T TIGR01242 119 VSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG--------- 189 (364)
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecch---------
Confidence 34467899999999998876421 1 124558899999999999999999987655422110
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHH-HHHccCcEEEEEcCCCCHH----------------HHHHhcCCCC
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIG-SRLRYRKVLLIVDAAFDLK----------------QLESLAGKHE 242 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~-~~l~~~~~LlVlDdv~~~~----------------~l~~l~~~~~ 242 (445)
. .+.....+ ........+. ..-...+.+|+||+++... .+..++....
T Consensus 190 ----~----~l~~~~~g-------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 190 ----S----ELVRKYIG-------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred ----H----HHHHHhhh-------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 0 01111000 0011111121 2223467899999987531 1222221111
Q ss_pred Cc----Ccccccc--------------cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHHhCCCh
Q 045345 243 WF----DEHLLMT--------------HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPW-KEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 243 ~~----~~~vl~t--------------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlP 301 (445)
.+ +..++.+ .+.+..+.++..+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 00 1112222 23356788999999999999988774433221 12 345667776654
No 43
>smart00255 TIR Toll - interleukin 1 - resistance.
Probab=98.44 E-value=4.9e-07 Score=75.79 Aligned_cols=74 Identities=39% Similarity=0.680 Sum_probs=61.2
Q ss_pred CCCCChhhHHHHHHHHhchhc-CCCccEEEeeeccCCCcccccccchHHHHHHHhHHhhhhcHHHHHHHHHHHHHHHh
Q 045345 1 NYAYSTWCLDELVEIVELKST-NGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRMNIEKVQKWRDALKKVAN 77 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~-~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~ 77 (445)
+|..|.||..|+..++++..+ .. ..||||||+..|+.+..+.+.++.++..+..++.....+ ..|++++..+++
T Consensus 65 ~~~~S~w~~~E~~~a~~~~~~~~~--~~iIPI~~~~~~~~~~~~~~~l~~~~~~~~~~w~~~~~~-~fW~~~~~~l~~ 139 (140)
T smart00255 65 NYAESEWCLDELVAALENALEEGG--LRVIPIFYEVIPSDVRKQPGKFRKVLKKNYLKWPEDEKE-RFWKKALYAVPS 139 (140)
T ss_pred ccccChhHHHHHHHHHHHHHHcCC--CeEEEEEEecChHHHHhcccHHHHHHHHHHhhcCCchhH-HHHHHHHHHhcc
Confidence 689999999999999998865 44 799999999999999999999999998875555544333 689988876653
No 44
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.44 E-value=1.1e-06 Score=73.69 Aligned_cols=54 Identities=26% Similarity=0.282 Sum_probs=40.8
Q ss_pred cccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 117 VGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+|++..+..+...+... ..+.+.|+|++|+|||+|++.+++.+......++++.
T Consensus 1 ~~~~~~~~~i~~~~~~~--~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 54 (151)
T cd00009 1 VGQEEAIEALREALELP--PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN 54 (151)
T ss_pred CchHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence 47888999998888742 3467889999999999999999998643333344443
No 45
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=3.1e-05 Score=77.67 Aligned_cols=181 Identities=22% Similarity=0.163 Sum_probs=96.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-..+... ....+.......+
T Consensus 10 ~~f~dliGQe~vv~~L~~a~~~~r-i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~---------~~pCg~C~~C~~i 79 (491)
T PRK14964 10 SSFKDLVGQDVLVRILRNAFTLNK-IPQSILLVGASGVGKTTCARIISLCLNCSNGPT---------SDPCGTCHNCISI 79 (491)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCccHHHHHHHHHHHHcCcCCCC---------CCCccccHHHHHH
Confidence 456789999999999988887432 134788999999999999999987532111100 0000000011111
Q ss_pred HHHHh----CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC---
Q 045345 191 LSELL----KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG--- 253 (445)
Q Consensus 191 l~~l~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~--- 253 (445)
..... .....+....++.. .+.+.. .++.-++|+|+++.. ...+.++ ........-++.++.
T Consensus 80 ~~~~~~Dv~eidaas~~~vddIR-~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~K 158 (491)
T PRK14964 80 KNSNHPDVIEIDAASNTSVDDIK-VILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKK 158 (491)
T ss_pred hccCCCCEEEEecccCCCHHHHH-HHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHH
Confidence 10000 00000011111111 111111 245668999999743 3333333 222111111222211
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
....+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+..+
T Consensus 159 l~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~--i~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 159 IPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIE--HDEESLKLIAENSSGSMRNA 214 (491)
T ss_pred HHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 23568999999999999988877433322 22355778999999988643
No 46
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=2.1e-05 Score=80.44 Aligned_cols=183 Identities=17% Similarity=0.144 Sum_probs=98.8
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+...+.|..++..+. -...+.++|+.|+||||+|+.+++.+-.... .. ....+.......+
T Consensus 12 ktFddVIGQe~vv~~L~~aI~~gr-l~HAyLF~GPpGvGKTTlAriLAK~LnC~~~----~~-----~~pCg~C~sC~~I 81 (702)
T PRK14960 12 RNFNELVGQNHVSRALSSALERGR-LHHAYLFTGTRGVGKTTIARILAKCLNCETG----VT-----STPCEVCATCKAV 81 (702)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCcC----CC-----CCCCccCHHHHHH
Confidence 455789999999999999988432 2467789999999999999999987532110 00 0000000001111
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHH----HHccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCccccccc-----
Q 045345 191 LSE----LLKLPDTSTWNVYDGLKMIGS----RLRYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTH----- 252 (445)
Q Consensus 191 l~~----l~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~----- 252 (445)
... +......+....++....+.. -..++.-++|||+++.. .....++ ......-.-+++++
T Consensus 82 ~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kI 161 (702)
T PRK14960 82 NEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKL 161 (702)
T ss_pred hcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhh
Confidence 000 000000001112221111111 11356679999999844 3333333 22111111111111
Q ss_pred -----CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 253 -----GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 253 -----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
.....+++.+|+.++..+.+...+-..+.. ...+....|++.++|.+..+.
T Consensus 162 p~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~--id~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 162 PITVISRCLQFTLRPLAVDEITKHLGAILEKEQIA--ADQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred hHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 123568999999999999888776333222 223567789999999875443
No 47
>PRK08727 hypothetical protein; Validated
Probab=98.41 E-value=6.1e-06 Score=75.51 Aligned_cols=59 Identities=20% Similarity=0.266 Sum_probs=38.1
Q ss_pred ccccccccchh-HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 112 IFKDLVGMDSC-WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 112 ~~~~~vGr~~~-l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++|++.... +..+..+... .....+.|+|.+|+|||+|+.++++....+...+.|+.
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~--~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAG--QSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 45567765543 3333333321 12346899999999999999999988655544556654
No 48
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.40 E-value=3.5e-05 Score=79.57 Aligned_cols=182 Identities=16% Similarity=0.129 Sum_probs=96.9
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+..++.|..++..+. -...+.++|+.|+||||+|+.++..+-..-... +.. .+.......+
T Consensus 13 ~tFddIIGQe~vv~~L~~ai~~~r-l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~-~~p--------Cg~C~sCr~i 82 (709)
T PRK08691 13 KTFADLVGQEHVVKALQNALDEGR-LHHAYLLTGTRGVGKTTIARILAKSLNCENAQH-GEP--------CGVCQSCTQI 82 (709)
T ss_pred CCHHHHcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CCC--------CcccHHHHHH
Confidence 456789999999999999988532 245778999999999999999988642211000 000 0000000000
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHH----HHccCcEEEEEcCCCCHH--HHHHhc---CC-CCCcCcccccccC---
Q 045345 191 LSE----LLKLPDTSTWNVYDGLKMIGS----RLRYRKVLLIVDAAFDLK--QLESLA---GK-HEWFDEHLLMTHG--- 253 (445)
Q Consensus 191 l~~----l~~~~~~~~~~~~~~~~~l~~----~l~~~~~LlVlDdv~~~~--~l~~l~---~~-~~~~~~~vl~t~~--- 253 (445)
... +...........+.....+.. -..+++-++|||+++... ....++ .. ... -.-|++++.
T Consensus 83 ~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~-v~fILaTtd~~k 161 (709)
T PRK08691 83 DAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEH-VKFILATTDPHK 161 (709)
T ss_pred hccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCC-cEEEEEeCCccc
Confidence 000 000000011111111111111 012466799999998543 222222 11 111 111222221
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
....+.+.+++.++..+.+.+.+-..+.. -..+.+..|++.++|.+.-+.
T Consensus 162 L~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~--id~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 162 VPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIA--YEPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred cchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHHhCCCHHHHH
Confidence 12346888999999999888776433322 224567889999999986443
No 49
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.40 E-value=3.7e-06 Score=81.28 Aligned_cols=187 Identities=17% Similarity=0.113 Sum_probs=103.3
Q ss_pred CccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc----cccceeeehhhhhhccCCHH
Q 045345 109 KSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE----FEASSFLANVREISEKGGLI 184 (445)
Q Consensus 109 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~~~~~~~~~~~~ 184 (445)
.|.....++|-+...+.+...+..+. ....+.|+|+.|+||||+|..+++.+-.. +...... ...+..
T Consensus 18 ~P~~~~~l~Gh~~a~~~L~~a~~~gr-l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~-------~~~~~c 89 (351)
T PRK09112 18 SPSENTRLFGHEEAEAFLAQAYREGK-LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLA-------DPDPAS 89 (351)
T ss_pred CCCchhhccCcHHHHHHHHHHHHcCC-CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccC-------CCCCCC
Confidence 44566789999999999999988542 24578899999999999999999875331 1110000 000011
Q ss_pred HHHHHHHHH-------HhCCCCC------CCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCC
Q 045345 185 CLQKQLLSE-------LLKLPDT------STWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKH 241 (445)
Q Consensus 185 ~l~~~il~~-------l~~~~~~------~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~ 241 (445)
.....+... +....+. ..-.+++ +..+.+.+ .++.-++|+|+++.. ...+.++ ...
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~-iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp 168 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDE-IRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP 168 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHH-HHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC
Confidence 111222111 0000000 0111222 22333333 246679999999843 3333332 221
Q ss_pred CCc---------CcccccccC-CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 242 EWF---------DEHLLMTHG-VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 242 ~~~---------~~~vl~t~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
... ...++.|.+ ....+++.+++.++..+++........ ...+.+..+++.++|.|+....+.
T Consensus 169 p~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~----~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 169 PARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG----SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred CCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 111 111222211 235789999999999999987432111 113446789999999998655443
No 50
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.39 E-value=9.4e-06 Score=74.36 Aligned_cols=161 Identities=17% Similarity=0.131 Sum_probs=83.8
Q ss_pred cccc-ccc-hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHH
Q 045345 114 KDLV-GMD-SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLL 191 (445)
Q Consensus 114 ~~~v-Gr~-~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il 191 (445)
++|+ |-. ..+..+.++... ...+.+.|+|++|+|||+|+.++++........+.|+. ...... ..
T Consensus 22 d~f~~~~n~~a~~~l~~~~~~--~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~~---~~---- 88 (235)
T PRK08084 22 ASFYPGDNDSLLAALQNALRQ--EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRAW---FV---- 88 (235)
T ss_pred cccccCccHHHHHHHHHHHhC--CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHhh---hh----
Confidence 4555 632 234444444432 23457889999999999999999987654433445554 111000 00
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH---HHHH----Hhc-CCCCCcCcccccccC----------
Q 045345 192 SELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL---KQLE----SLA-GKHEWFDEHLLMTHG---------- 253 (445)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~---~~l~----~l~-~~~~~~~~~vl~t~~---------- 253 (445)
.+ +.+.+.. --+|+|||++.. .+++ .+. .........++.|+.
T Consensus 89 --------------~~----~~~~~~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 89 --------------PE----VLEGMEQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred --------------HH----HHHHhhh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 00 1111111 137888998642 1111 111 100000112333322
Q ss_pred --------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 254 --------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 254 --------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
...++++++++.++-.+++.+.+...... -.++...-|++.+.|..-.+..+-
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~--l~~~v~~~L~~~~~~d~r~l~~~l 210 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFE--LPEDVGRFLLKRLDREMRTLFMTL 210 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhhcCCHHHHHHHH
Confidence 22568899999988888887766332211 224566777777777666554443
No 51
>PRK05642 DNA replication initiation factor; Validated
Probab=98.39 E-value=6.7e-06 Score=75.22 Aligned_cols=141 Identities=18% Similarity=0.182 Sum_probs=76.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
.+.+.|+|.+|+|||.|++++++.+...-..++|+.. .+ +... ...+.+.+
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-~~-------------~~~~---------------~~~~~~~~ 95 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-AE-------------LLDR---------------GPELLDNL 95 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-HH-------------HHhh---------------hHHHHHhh
Confidence 3578899999999999999998876544345566651 11 1100 01122333
Q ss_pred ccCcEEEEEcCCCCH---HH----HHHhcCCCCCcCcccccccC------------------CCceEEcCCCCHHHHHHH
Q 045345 217 RYRKVLLIVDAAFDL---KQ----LESLAGKHEWFDEHLLMTHG------------------VDEVHKLKVLHDDEALQL 271 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~---~~----l~~l~~~~~~~~~~vl~t~~------------------~~~~~~l~~L~~~ea~~L 271 (445)
.+-. +||+||+... .. +-.+......-++.+++++. ...++++++++.++-.+.
T Consensus 96 ~~~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~i 174 (234)
T PRK05642 96 EQYE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRA 174 (234)
T ss_pred hhCC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHH
Confidence 3332 6788998522 12 11111100000223333332 224578899999988888
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 272 FCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 272 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
+..++....... .+++..-|++.+.|-.-.+..+-.
T Consensus 175 l~~ka~~~~~~l--~~ev~~~L~~~~~~d~r~l~~~l~ 210 (234)
T PRK05642 175 LQLRASRRGLHL--TDEVGHFILTRGTRSMSALFDLLE 210 (234)
T ss_pred HHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHHHHHHH
Confidence 885553322211 135666677777776655544433
No 52
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.36 E-value=8.8e-06 Score=82.70 Aligned_cols=186 Identities=19% Similarity=0.151 Sum_probs=97.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc---cceeee-hhhhhhc--cCCHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE---ASSFLA-NVREISE--KGGLI 184 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~-~~~~~~~--~~~~~ 184 (445)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... ..|-.+ ....+.. ..++.
T Consensus 13 ~~f~diiGq~~~v~~L~~~i~~~r-l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dli 91 (546)
T PRK14957 13 QSFAEVAGQQHALNSLVHALETQK-VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLI 91 (546)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceE
Confidence 445789999999999998887432 2456789999999999999999986532110 000000 0000000 00000
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------Ccccc
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSR-LRYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------DEHLL 249 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~~~vl 249 (445)
.+ .........+.......+... ..+++-++|+|+++.. ...+.++ ...... ...++
T Consensus 92 ei--------daas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 92 EI--------DAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIP 163 (546)
T ss_pred Ee--------ecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhh
Confidence 00 000000111111222222111 2356679999999843 3333333 222111 11122
Q ss_pred cc-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 045345 250 MT-HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVL 307 (445)
Q Consensus 250 ~t-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 307 (445)
.+ ......+++.+++.++..+.+...+-..+. ....+....|++.++|.+. |+..+
T Consensus 164 ~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi--~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 164 VTILSRCIQLHLKHISQADIKDQLKIILAKENI--NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred hhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12 112367899999999988888775532221 1234556778999999765 44444
No 53
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.7e-05 Score=71.96 Aligned_cols=253 Identities=17% Similarity=0.228 Sum_probs=137.9
Q ss_pred cccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....+|||.+...++|.=.+.. .....--|.++|++|.||||||.-+++.+...+.... ..-.....++.
T Consensus 23 ~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~ts----Gp~leK~gDla--- 95 (332)
T COG2255 23 KTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITS----GPALEKPGDLA--- 95 (332)
T ss_pred ccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecc----cccccChhhHH---
Confidence 3457899999888888766653 2223567889999999999999999998755432100 00001111111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-HHHHh-cCCCCCc-----------Ccc-------
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-QLESL-AGKHEWF-----------DEH------- 247 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-~l~~l-~~~~~~~-----------~~~------- 247 (445)
.++.. |+ ..=+|.+|.++-.. ..+++ .+...-| .+.
T Consensus 96 -aiLt~----------------------Le-~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLpp 151 (332)
T COG2255 96 -AILTN----------------------LE-EGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPP 151 (332)
T ss_pred -HHHhc----------------------CC-cCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCC
Confidence 11111 11 22245667665321 11111 1111111 000
Q ss_pred ---cccccC-----------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCC
Q 045345 248 ---LLMTHG-----------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYG 313 (445)
Q Consensus 248 ---vl~t~~-----------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~ 313 (445)
|-.|++ ..-+.+++--+.+|-.+...+.+..-+. +-.++.+.+|++++.|-|.-..-+-+.++.
T Consensus 152 FTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD 229 (332)
T COG2255 152 FTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVRD 229 (332)
T ss_pred eeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence 111111 2245678888899988888877722221 122456889999999999644433333221
Q ss_pred CCHHHHHHHHHH--HhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC--CCCCHHHHHHHHHhCCCCchhcHH-HHhh
Q 045345 314 KTTKEWESAPKR--LERESENEILDILKISFDGLRETEKKIFLDIACFY--RGEDRDYVTKIIDYCDFDPVIGIR-VLID 388 (445)
Q Consensus 314 ~~~~~w~~~l~~--l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l~-~L~~ 388 (445)
+..+... +...........|..-=..|+...++++..+.-.+ ++...+.+...++.+....++.++ .|++
T Consensus 230 -----fa~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq 304 (332)
T COG2255 230 -----FAQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQ 304 (332)
T ss_pred -----HHHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHH
Confidence 1110000 00000122333444444567777777777776555 346678887777654444444443 5999
Q ss_pred cCceEEccCCeEE
Q 045345 389 KSLIEISNGNRLR 401 (445)
Q Consensus 389 ~sLi~~~~~~~~~ 401 (445)
.|+|+.+..|++-
T Consensus 305 ~gfi~RTpRGR~a 317 (332)
T COG2255 305 QGFIQRTPRGRIA 317 (332)
T ss_pred hchhhhCCCccee
Confidence 9999998888764
No 54
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.34 E-value=3.2e-05 Score=78.10 Aligned_cols=184 Identities=16% Similarity=0.125 Sum_probs=98.6
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc-------cceeeeh-hhhhhc--
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE-------ASSFLAN-VREISE-- 179 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-------~~~~~~~-~~~~~~-- 179 (445)
|....++||-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+-.... ..|..+. ...+..
T Consensus 17 P~~f~dliGq~~vv~~L~~ai~~~r-i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~ 95 (507)
T PRK06645 17 PSNFAELQGQEVLVKVLSYTILNDR-LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHN 95 (507)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCC
Confidence 3456789999999999988776432 2357889999999999999999987532110 0111110 000000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS-RLRYRKVLLIVDAAFDL--KQLESLA---GKHEWF--------- 244 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~--------- 244 (445)
..++. .+.........++...+..... -..+++-++|+|+++.. ..++.++ ......
T Consensus 96 h~Dv~--------eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte 167 (507)
T PRK06645 96 HPDII--------EIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTE 167 (507)
T ss_pred CCcEE--------EeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCC
Confidence 00000 0000000111111111111110 12346678999999853 3344443 211110
Q ss_pred Cccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 245 DEHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 245 ~~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
...+..+. .....+++.+++.++..+.+...+...+.. -..+....|++.++|.+.-+
T Consensus 168 ~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~--ie~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 168 VQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLK--TDIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 11122111 123568999999999999998877433322 12355777999999987544
No 55
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=98.33 E-value=3.2e-06 Score=78.93 Aligned_cols=168 Identities=21% Similarity=0.256 Sum_probs=92.5
Q ss_pred cccccccccchhHHH---HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNT---LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
..-.++||.+..+.+ |.+++. .+..+.+.+||++|+||||||+.++..-+.+ ...|+. .+....-..-.
T Consensus 135 ktL~dyvGQ~hlv~q~gllrs~ie--q~~ipSmIlWGppG~GKTtlArlia~tsk~~--Syrfve----lSAt~a~t~dv 206 (554)
T KOG2028|consen 135 KTLDDYVGQSHLVGQDGLLRSLIE--QNRIPSMILWGPPGTGKTTLARLIASTSKKH--SYRFVE----LSATNAKTNDV 206 (554)
T ss_pred chHHHhcchhhhcCcchHHHHHHH--cCCCCceEEecCCCCchHHHHHHHHhhcCCC--ceEEEE----EeccccchHHH
Confidence 344567776655443 233333 4567888899999999999999999865443 134444 22211111111
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCC--CHHHHHHhcCCCCCcCccccc-cc------------
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAF--DLKQLESLAGKHEWFDEHLLM-TH------------ 252 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~l~~l~~~~~~~~~~vl~-t~------------ 252 (445)
+.++.+-. -...+.++|.+|.+|.|. +..|-+.+++.....+..++- |+
T Consensus 207 R~ife~aq----------------~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLl 270 (554)
T KOG2028|consen 207 RDIFEQAQ----------------NEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTENPSFQLNAALL 270 (554)
T ss_pred HHHHHHHH----------------HHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccCCCccchhHHHH
Confidence 11111110 112345788999999996 445555565543322111110 00
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhh--c-CCC-----CCc---hHHHHHHHHHHHHhCCChH
Q 045345 253 GVDEVHKLKVLHDDEALQLFCKQA--F-KTN-----QPW---KEYEQLSKYVVKYSGGLPL 302 (445)
Q Consensus 253 ~~~~~~~l~~L~~~ea~~Lf~~~a--~-~~~-----~~~---~~~~~~~~~i~~~~~GlPL 302 (445)
....++.|++|+.++...++.+.. . ... .+. .-...+.+-++..|.|-..
T Consensus 271 SRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 271 SRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 123568899999999998887632 1 111 111 1234556666777777543
No 56
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=4.2e-05 Score=78.87 Aligned_cols=185 Identities=15% Similarity=0.152 Sum_probs=98.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-cc--cceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FE--ASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~--~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....++||-+..++.|..++..+. -...+.++|+.|+||||+|+.+++.+-.. -+ ... .....+.....
T Consensus 13 ~~f~dviGQe~vv~~L~~~l~~~r-l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~-------~~~pCg~C~~C 84 (618)
T PRK14951 13 RSFSEMVGQEHVVQALTNALTQQR-LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGI-------TATPCGVCQAC 84 (618)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCC-------CCCCCCccHHH
Confidence 445789999999999999888532 24567899999999999999998764211 00 000 00001111111
Q ss_pred HHHHHH----HhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhcC---CCCCcCccccccc-
Q 045345 188 KQLLSE----LLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLAG---KHEWFDEHLLMTH- 252 (445)
Q Consensus 188 ~~il~~----l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~~---~~~~~~~~vl~t~- 252 (445)
..+... +...........++..+ +.+.. .++.-++|||+|+.. ...+.++. .....-.-++.|+
T Consensus 85 ~~i~~g~h~D~~eldaas~~~Vd~iRe-li~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd 163 (618)
T PRK14951 85 RDIDSGRFVDYTELDAASNRGVDEVQQ-LLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTD 163 (618)
T ss_pred HHHHcCCCCceeecCcccccCHHHHHH-HHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECC
Confidence 111000 00000001111222111 11221 234558999999843 34444432 2111111122221
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
.....+++++|+.++..+.+.+.+...+... ..+.+..|++.++|.+.-+..
T Consensus 164 ~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~i--e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 164 PQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPA--EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred chhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHH
Confidence 1235689999999999998887764333221 235677889999998754433
No 57
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.33 E-value=7.1e-06 Score=82.18 Aligned_cols=156 Identities=18% Similarity=0.192 Sum_probs=90.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccc--cceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFE--ASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS 214 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~ 214 (445)
...+.|+|..|+|||+|++++++.+....+ .++++. ...+...+...+... ......+.+
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~--------~~~~~~~~~ 202 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKT--------HKEIEQFKN 202 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHh--------hhHHHHHHH
Confidence 356789999999999999999987654322 233433 223344444443311 012233444
Q ss_pred HHccCcEEEEEcCCCCHH----HHHHhcCCCCCc---Cccccccc------------------CCCceEEcCCCCHHHHH
Q 045345 215 RLRYRKVLLIVDAAFDLK----QLESLAGKHEWF---DEHLLMTH------------------GVDEVHKLKVLHDDEAL 269 (445)
Q Consensus 215 ~l~~~~~LlVlDdv~~~~----~l~~l~~~~~~~---~~~vl~t~------------------~~~~~~~l~~L~~~ea~ 269 (445)
.++ ..-+|||||+.... ..+.+....... ++.+++++ ...-++.+++++.++-.
T Consensus 203 ~~~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 203 EIC-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTAT 281 (450)
T ss_pred Hhc-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHH
Confidence 444 34478889996331 122221110000 22333332 12345789999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 270 QLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 270 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
+++.+.+-.......-.++...-|++.++|.|..+.-+...+
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l 323 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL 323 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 999888733221112335778889999999999887665433
No 58
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.31 E-value=2.7e-05 Score=79.16 Aligned_cols=181 Identities=15% Similarity=0.110 Sum_probs=94.2
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||-+..++.|...+..+. -...+.++|++|+||||+|+.+++.+-..-... ....+.......+
T Consensus 13 ~~f~divGq~~v~~~L~~~~~~~~-l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---------~~pCg~C~~C~~i 82 (509)
T PRK14958 13 RCFQEVIGQAPVVRALSNALDQQY-LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVS---------ANPCNDCENCREI 82 (509)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCC---------cccCCCCHHHHHH
Confidence 455789999999999999997432 234678999999999999999998642210000 0000000000000
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHHH-----HccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC---
Q 045345 191 LSE----LLKLPDTSTWNVYDGLKMIGSR-----LRYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG--- 253 (445)
Q Consensus 191 l~~----l~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~--- 253 (445)
... +...........++... +.+. ..++.-++|+|+|+.. ...+.++ ......-.-++.|+.
T Consensus 83 ~~g~~~d~~eidaas~~~v~~iR~-l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~k 161 (509)
T PRK14958 83 DEGRFPDLFEVDAASRTKVEDTRE-LLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHK 161 (509)
T ss_pred hcCCCceEEEEcccccCCHHHHHH-HHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHh
Confidence 000 00000000111111111 1111 1245568999999843 3343333 221111111222211
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
....+++++++.++..+.+...+-..+... ..+....|++.++|.+.-+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR~a 217 (509)
T PRK14958 162 LPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVRDA 217 (509)
T ss_pred chHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHHHH
Confidence 124578999999998877766653322221 2345677899999988644
No 59
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.29 E-value=7.2e-06 Score=80.85 Aligned_cols=52 Identities=21% Similarity=0.269 Sum_probs=40.2
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...++.|++..+++|...+.. +-...+-|.|+|++|+|||+||+++++....
T Consensus 129 ~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~ 191 (389)
T PRK03992 129 TYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA 191 (389)
T ss_pred CHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC
Confidence 345688999999999886532 1123456889999999999999999987654
No 60
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.3e-05 Score=82.82 Aligned_cols=183 Identities=17% Similarity=0.130 Sum_probs=99.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.... .. ....+.......+
T Consensus 13 ~~f~divGQe~vv~~L~~~l~~~r-l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~----~~-----~~pCg~C~~C~~i 82 (647)
T PRK07994 13 QTFAEVVGQEHVLTALANALDLGR-LHHAYLFSGTRGVGKTTIARLLAKGLNCETG----IT-----ATPCGECDNCREI 82 (647)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhhhccC----CC-----CCCCCCCHHHHHH
Confidence 456789999999999999887432 2345789999999999999999987532210 00 0000111111111
Q ss_pred HHH-------HhCCCCCCCcChhhhHHHHHH-HHccCcEEEEEcCCCC--HHHHHHhc---CC-CCC--c------Cccc
Q 045345 191 LSE-------LLKLPDTSTWNVYDGLKMIGS-RLRYRKVLLIVDAAFD--LKQLESLA---GK-HEW--F------DEHL 248 (445)
Q Consensus 191 l~~-------l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~--~~~l~~l~---~~-~~~--~------~~~v 248 (445)
... +.........++.+....+.. -..++.-++|||+++. ....+.|+ .. ... | ...+
T Consensus 83 ~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kL 162 (647)
T PRK07994 83 EQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 162 (647)
T ss_pred HcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcccc
Confidence 100 000000011111111111111 1235667999999984 33444443 11 111 1 2223
Q ss_pred cccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 249 LMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 249 l~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
+.|. .....|++++|+.++..+.+.+.+-..... ...+....|++.++|.+.-..
T Consensus 163 l~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~--~e~~aL~~Ia~~s~Gs~R~Al 218 (647)
T PRK07994 163 PVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIP--FEPRALQLLARAADGSMRDAL 218 (647)
T ss_pred chHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 3221 124678999999999999888765222221 223556789999999887443
No 61
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=3e-05 Score=75.04 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=96.1
Q ss_pred ccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~ 187 (445)
.+..++||+.++..+..++.. ..+..+.+=|.|-+|.|||.+...++.+....... .+++. ...-.....++
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF 223 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIF 223 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHH
Confidence 457799999999999998875 33445677899999999999999999886655443 24443 22224455666
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHcc--CcEEEEEcCCCCHH-----------HHHHhcCCC-------CCc--C
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLRY--RKVLLIVDAAFDLK-----------QLESLAGKH-------EWF--D 245 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~-----------~l~~l~~~~-------~~~--~ 245 (445)
..|+..+.......... .+....+...... ..+|+|+|..|... .|..+.... +.+ .
T Consensus 224 ~kI~~~~~q~~~s~~~~-~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlT 302 (529)
T KOG2227|consen 224 KKIFSSLLQDLVSPGTG-MQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLT 302 (529)
T ss_pred HHHHHHHHHHhcCCchh-HHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHH
Confidence 66666663222212212 2334444444443 36899999987442 111111000 000 1
Q ss_pred cccccccC-----CCceEEcCCCCHHHHHHHHHHhh
Q 045345 246 EHLLMTHG-----VDEVHKLKVLHDDEALQLFCKQA 276 (445)
Q Consensus 246 ~~vl~t~~-----~~~~~~l~~L~~~ea~~Lf~~~a 276 (445)
.+.+.+.. ....+..++-+.++-.++|....
T Consensus 303 dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl 338 (529)
T KOG2227|consen 303 DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRL 338 (529)
T ss_pred HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHH
Confidence 11222111 13457788999999999998877
No 62
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.25 E-value=2.3e-05 Score=70.93 Aligned_cols=171 Identities=18% Similarity=0.220 Sum_probs=86.1
Q ss_pred ccc-cccchh--HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHHHH
Q 045345 114 KDL-VGMDSC--WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 114 ~~~-vGr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 188 (445)
++| +|-..+ .................+.|+|..|+|||.|.+++++.+...++. ++++. ......
T Consensus 8 dnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~ 77 (219)
T PF00308_consen 8 DNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIR 77 (219)
T ss_dssp CCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHH
T ss_pred ccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHH
Confidence 445 465333 333333333323234567899999999999999999987654443 34443 222233
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH---HH-HHhcCCCCCc---Cccccccc---------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK---QL-ESLAGKHEWF---DEHLLMTH--------- 252 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~---~l-~~l~~~~~~~---~~~vl~t~--------- 252 (445)
.+...+.. .....+...++ .-=+|+|||++... .+ +.+....+.+ ++.+++++
T Consensus 78 ~~~~~~~~----------~~~~~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~ 146 (219)
T PF00308_consen 78 EFADALRD----------GEIEEFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSG 146 (219)
T ss_dssp HHHHHHHT----------TSHHHHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTT
T ss_pred HHHHHHHc----------ccchhhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccc
Confidence 33333321 11233444444 33477889986431 11 1111000000 23333333
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...-++++++++.++-.+++.+.+...... -.++++.-|++.+.+..-.|.-+
T Consensus 147 ~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 147 LLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp S-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred cChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHH
Confidence 233468899999999999998877433322 22456666777766665555433
No 63
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.25 E-value=3.9e-05 Score=75.02 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=96.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc----cccceeeeh-hhhhhc--cCCH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE----FEASSFLAN-VREISE--KGGL 183 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~----f~~~~~~~~-~~~~~~--~~~~ 183 (445)
.....++|.+..++.+...+..+. -...+.++|++|+|||++|+.++..+... +.. |-.+. ...+.. ..++
T Consensus 11 ~~~~~iig~~~~~~~l~~~~~~~~-~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~-c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 11 QTFEDVIGQEHIVQTLKNAIKNGR-IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEP-CNECESCKEINSGSSLDV 88 (355)
T ss_pred CcHhhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHhcCCCCCE
Confidence 445678999999999999887432 23577899999999999999998875321 110 00000 000000 0000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-HccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcc-ccccc----
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR-LRYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEH-LLMTH---- 252 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~-l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~-vl~t~---- 252 (445)
..+ .+.......+.......+... ..+++-++|+|+++.. .....++ ..... +.. ++.+.
T Consensus 89 ~~~--------~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~-~~~lIl~~~~~~~ 159 (355)
T TIGR02397 89 IEI--------DAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPE-HVVFILATTEPHK 159 (355)
T ss_pred EEe--------eccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCcc-ceeEEEEeCCHHH
Confidence 000 000000000111111111110 1234568899998744 3233332 11111 111 11111
Q ss_pred ------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 253 ------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 253 ------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
.....+++.+++.++..+++...+-..+... ..+.+..+++.++|.|..+....
T Consensus 160 l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i--~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 160 IPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKI--EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred HHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCChHHHHHHH
Confidence 1124678999999999998887663332221 13667889999999997665443
No 64
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=9e-05 Score=75.69 Aligned_cols=185 Identities=16% Similarity=0.138 Sum_probs=97.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....+++|.+..++.+...+..+. -.+.+.++|+.|+||||+|+.+++.+...- |.. . ...+.......+
T Consensus 13 ~~F~dIIGQe~iv~~L~~aI~~~r-l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~----~~~----~-~~Cg~C~sCr~i 82 (605)
T PRK05896 13 HNFKQIIGQELIKKILVNAILNNK-LTHAYIFSGPRGIGKTSIAKIFAKAINCLN----PKD----G-DCCNSCSVCESI 82 (605)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHhcCCC----CCC----C-CCCcccHHHHHH
Confidence 455789999999999999886432 245788999999999999999998753211 110 0 000000111111
Q ss_pred HHHH----hCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------Ccc
Q 045345 191 LSEL----LKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------DEH 247 (445)
Q Consensus 191 l~~l----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~~~ 247 (445)
.... ...........++ +..+.... .+++-++|+|+++.. .....|+ ..++.. ...
T Consensus 83 ~~~~h~DiieIdaas~igVd~-IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 83 NTNQSVDIVELDAASNNGVDE-IRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HcCCCCceEEeccccccCHHH-HHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 1000 0000000011111 11111111 123447999999743 3333332 221111 112
Q ss_pred cccc-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHHH
Q 045345 248 LLMT-HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVLG 308 (445)
Q Consensus 248 vl~t-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~~ 308 (445)
+..| ......+++.+++.++....+...+-..+.. -..+.+..+++.++|.+. |+..+-
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~--Is~eal~~La~lS~GdlR~AlnlLe 222 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIK--IEDNAIDKIADLADGSLRDGLSILD 222 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHH
Confidence 2212 1123568999999999998888766332211 113457789999999765 444443
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=9.7e-05 Score=73.17 Aligned_cols=188 Identities=15% Similarity=0.112 Sum_probs=97.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc--cccceeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE--FEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....+++|.+...+.|...+..+. -...+.++|++|+||||+|..+++.+... +....|.... ....+......
T Consensus 13 ~~~~eiiGq~~~~~~L~~~~~~~~-~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~---~~~c~~c~~c~ 88 (397)
T PRK14955 13 KKFADITAQEHITRTIQNSLRMGR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEV---TEPCGECESCR 88 (397)
T ss_pred CcHhhccChHHHHHHHHHHHHhCC-cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccC---CCCCCCCHHHH
Confidence 345789999999999998887432 13457899999999999999999875321 1111111000 00000001111
Q ss_pred HHHHHHh----CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC-
Q 045345 189 QLLSELL----KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG- 253 (445)
Q Consensus 189 ~il~~l~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~- 253 (445)
.+..... ..........++.. .+.+.+ .+.+-++|+|+++.. ...+.++ ........-++++..
T Consensus 89 ~~~~~~~~n~~~~~~~~~~~id~Ir-~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~ 167 (397)
T PRK14955 89 DFDAGTSLNISEFDAASNNSVDDIR-LLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTEL 167 (397)
T ss_pred HHhcCCCCCeEeecccccCCHHHHH-HHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 1110000 00000111122222 222323 245568899999743 2333332 222111111222221
Q ss_pred ---------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 254 ---------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 254 ---------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
....+++.+++.++..+.+...+-.... .-..+.+..|++.++|.+--+.
T Consensus 168 ~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~--~i~~~al~~l~~~s~g~lr~a~ 226 (397)
T PRK14955 168 HKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGI--SVDADALQLIGRKAQGSMRDAQ 226 (397)
T ss_pred HHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCCHHHHH
Confidence 1245789999999998888776532221 1224567889999999886443
No 66
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=3.2e-05 Score=79.02 Aligned_cols=184 Identities=19% Similarity=0.158 Sum_probs=96.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||-+..++.|..++..+. -...+.++|++|+||||+|+.++..+-...... . ...+.......+
T Consensus 13 ~~f~divGq~~v~~~L~~~i~~~~-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pcg~C~~C~~i 82 (527)
T PRK14969 13 KSFSELVGQEHVVRALTNALEQQR-LHHAYLFTGTRGVGKTTLARILAKSLNCETGVT-A--------TPCGVCSACLEI 82 (527)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-C--------CCCCCCHHHHHH
Confidence 455789999999999999887432 234678999999999999999988753211000 0 000000000000
Q ss_pred HHH----HhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC---
Q 045345 191 LSE----LLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG--- 253 (445)
Q Consensus 191 l~~----l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~--- 253 (445)
... +...........++.. .+.... .+++-++|+|+++.. ...+.++ ......-.-++.|..
T Consensus 83 ~~~~~~d~~ei~~~~~~~vd~ir-~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~k 161 (527)
T PRK14969 83 DSGRFVDLIEVDAASNTQVDAMR-ELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQK 161 (527)
T ss_pred hcCCCCceeEeeccccCCHHHHH-HHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhh
Confidence 000 0000000011111111 111111 245679999999844 2233332 221111112222221
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVL 307 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 307 (445)
....+++++++.++..+.+...+-..+.. ...+.+..|++.++|.+. |+..+
T Consensus 162 il~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 162 IPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIP--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred CchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12457899999999998887765322221 223556778999999875 44333
No 67
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.24 E-value=3e-05 Score=76.06 Aligned_cols=176 Identities=14% Similarity=0.076 Sum_probs=92.8
Q ss_pred cccccccchhHHHHHhhhccCCC--------CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHH
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPY--------GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLI 184 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~--------~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~ 184 (445)
..+++|-+..++.|...+..+.. -...+.++|++|+|||++|..++..+-..... .-. .+..
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~--------Cg~C 73 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPG--------CGEC 73 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCC--------CCCC
Confidence 35689999999999998875421 24568899999999999999998864222110 000 0000
Q ss_pred HHHHHHHHHHh-----CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCc---
Q 045345 185 CLQKQLLSELL-----KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDE--- 246 (445)
Q Consensus 185 ~l~~~il~~l~-----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~--- 246 (445)
.....+..... ..........++ +..+.+.+ .+++-++|+|+++.. .....++ ..++....
T Consensus 74 ~~C~~~~~~~hpD~~~i~~~~~~i~i~~-iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL 152 (394)
T PRK07940 74 RACRTVLAGTHPDVRVVAPEGLSIGVDE-VRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLL 152 (394)
T ss_pred HHHHHHhcCCCCCEEEeccccccCCHHH-HHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEE
Confidence 00000000000 000000111111 12222222 234558888999743 2222232 22211111
Q ss_pred ------cccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 247 ------HLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 247 ------~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
.++.|. .....+.+++++.++..+.+.... ..+ .+.+..++..++|.|.....
T Consensus 153 ~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~---~~~----~~~a~~la~~s~G~~~~A~~ 212 (394)
T PRK07940 153 CAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD---GVD----PETARRAARASQGHIGRARR 212 (394)
T ss_pred EECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc---CCC----HHHHHHHHHHcCCCHHHHHH
Confidence 122121 123578999999999998887432 111 24467789999999975433
No 68
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.23 E-value=1.2e-06 Score=80.28 Aligned_cols=93 Identities=15% Similarity=0.062 Sum_probs=58.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC-ccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcC-----hhhhHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH-EFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWN-----VYDGLK 210 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~-----~~~~~~ 210 (445)
...++|.|++|+|||||++.+++.+.. +|+..+|+..+.+ ...++.++++.+...+.......... ......
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~ 93 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE 93 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999998644 5888889874322 12577778777744333221111110 011122
Q ss_pred HHHHH-HccCcEEEEEcCCCCH
Q 045345 211 MIGSR-LRYRKVLLIVDAAFDL 231 (445)
Q Consensus 211 ~l~~~-l~~~~~LlVlDdv~~~ 231 (445)
..... -.+++++|++|++...
T Consensus 94 ~a~~~~~~G~~vll~iDei~r~ 115 (249)
T cd01128 94 KAKRLVEHGKDVVILLDSITRL 115 (249)
T ss_pred HHHHHHHCCCCEEEEEECHHHh
Confidence 22222 2478999999998654
No 69
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=0.0001 Score=78.72 Aligned_cols=178 Identities=15% Similarity=0.119 Sum_probs=96.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc--c-ceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE--A-SSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~-~~~~~~~~~~~~~~~~~~l~ 187 (445)
....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+..... . .|=.+ ...
T Consensus 12 ~~f~eiiGqe~v~~~L~~~i~~~r-i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C------------~sC 78 (824)
T PRK07764 12 ATFAEVIGQEHVTEPLSTALDSGR-INHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGEC------------DSC 78 (824)
T ss_pred CCHHHhcCcHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCccc------------HHH
Confidence 445789999999999999988432 2346789999999999999999987532110 0 00000 000
Q ss_pred HHHHHH------HhCCCCCCCcChhhhHHHHHHH-----HccCcEEEEEcCCCCH--HHHHHh---cCCCCCc-------
Q 045345 188 KQLLSE------LLKLPDTSTWNVYDGLKMIGSR-----LRYRKVLLIVDAAFDL--KQLESL---AGKHEWF------- 244 (445)
Q Consensus 188 ~~il~~------l~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~------- 244 (445)
..+... +..........+++.. .+.+. ..++.-++|||+++.. ...+.| +......
T Consensus 79 ~~~~~g~~~~~dv~eidaas~~~Vd~iR-~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 79 VALAPGGPGSLDVTEIDAASHGGVDDAR-ELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHcCCCCCCcEEEecccccCCHHHHH-HHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 011000 0000000011122211 12221 2345568899999843 333333 3222111
Q ss_pred --Cccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 245 --DEHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 245 --~~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
..+++.|. .....|++..++.++..+++.+.+-..+.. ...+....|++.++|.+..+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~--id~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVP--VEPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 11233221 124568999999999988887765322221 12345677899999988433
No 70
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=0.00012 Score=75.31 Aligned_cols=184 Identities=20% Similarity=0.173 Sum_probs=97.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+....... . ...+.......+
T Consensus 10 ~~f~eivGq~~i~~~L~~~i~~~r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~-~--------~pCg~C~~C~~i 79 (584)
T PRK14952 10 ATFAEVVGQEHVTEPLSSALDAGR-INHAYLFSGPRGCGKTSSARILARSLNCAQGPT-A--------TPCGVCESCVAL 79 (584)
T ss_pred CcHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhccccCCC-C--------CcccccHHHHHh
Confidence 345789999999999999987432 234578999999999999999998753211000 0 000000001111
Q ss_pred HHHHhC------CCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCC--HHHHHHhc---CCCCCc---------C
Q 045345 191 LSELLK------LPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFD--LKQLESLA---GKHEWF---------D 245 (445)
Q Consensus 191 l~~l~~------~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~l~~l~---~~~~~~---------~ 245 (445)
...... ........+++. ..+.+.+ .++.-++|+|+++. ....+.|+ ...... .
T Consensus 80 ~~~~~~~~dvieidaas~~gvd~i-Rel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~ 158 (584)
T PRK14952 80 APNGPGSIDVVELDAASHGGVDDT-RELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP 158 (584)
T ss_pred hcccCCCceEEEeccccccCHHHH-HHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence 100000 000001111111 1122211 34566899999973 33343333 221111 1
Q ss_pred ccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 045345 246 EHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVL 307 (445)
Q Consensus 246 ~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 307 (445)
..++.|. .....+++.+++.++..+.+...+...+... ..+.+..|++.++|.+. ++..+
T Consensus 159 ~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i--~~~al~~Ia~~s~GdlR~aln~L 220 (584)
T PRK14952 159 EKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVV--DDAVYPLVIRAGGGSPRDTLSVL 220 (584)
T ss_pred HhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 2222221 1246789999999999988877663333211 23456778889999875 44443
No 71
>PRK09087 hypothetical protein; Validated
Probab=98.21 E-value=4.4e-05 Score=69.32 Aligned_cols=52 Identities=13% Similarity=0.003 Sum_probs=36.7
Q ss_pred CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 255 DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 255 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
..++++++++.++-.+++.+.+-.... .-.+++..-|++.+.|..-++..+-
T Consensus 145 gl~~~l~~pd~e~~~~iL~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 145 ATVVEIGEPDDALLSQVIFKLFADRQL--YVDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHHHHH
Confidence 356899999999999999888733221 1224667778888888777666443
No 72
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=4e-05 Score=79.65 Aligned_cols=185 Identities=17% Similarity=0.122 Sum_probs=98.8
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+.......- ....+.......+
T Consensus 13 ~~~~eiiGq~~~~~~L~~~i~~~~-i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~--------~~~c~~c~~c~~i 83 (585)
T PRK14950 13 QTFAELVGQEHVVQTLRNAIAEGR-VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPK--------GRPCGTCEMCRAI 83 (585)
T ss_pred CCHHHhcCCHHHHHHHHHHHHhCC-CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC--------CCCCccCHHHHHH
Confidence 345789999999999988887432 2356789999999999999999987532110000 0000111111122
Q ss_pred HHHHhC----CCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhcC---CCCCcCccccccc----
Q 045345 191 LSELLK----LPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLAG---KHEWFDEHLLMTH---- 252 (445)
Q Consensus 191 l~~l~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~~---~~~~~~~~vl~t~---- 252 (445)
...... .........++. ..+.+.+ .+++-++|||+++.. +..+.|+. .......-++.+.
T Consensus 84 ~~~~~~d~~~i~~~~~~~vd~i-r~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~k 162 (585)
T PRK14950 84 AEGSAVDVIEMDAASHTSVDDA-REIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHK 162 (585)
T ss_pred hcCCCCeEEEEeccccCCHHHH-HHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhh
Confidence 111000 000011111211 1222222 235668999999743 33444431 1111001111111
Q ss_pred ------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 253 ------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 253 ------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
.....+++.+++.++....+...+...+.. -..+.+..|++.++|.+..+...
T Consensus 163 ll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 163 VPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGIN--LEPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred hhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 122467899999999988888776433221 12356788999999999755443
No 73
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=98.21 E-value=1.4e-05 Score=85.29 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=39.5
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+.++||+.+++.+.+.|.... ..-+.++|++|+|||+||+.+++++.
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~--~~n~lL~G~pG~GKT~l~~~la~~~~ 228 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK--KNNPLLVGEPGVGKTAIAEGLALRIA 228 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC--CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 569999999999999887532 33567999999999999999999863
No 74
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=8.8e-05 Score=76.12 Aligned_cols=188 Identities=15% Similarity=0.175 Sum_probs=100.2
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-...... ....+.......+
T Consensus 13 ~sf~dIiGQe~v~~~L~~ai~~~r-i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~---------~~pCg~C~sC~~i 82 (624)
T PRK14959 13 QTFAEVAGQETVKAILSRAAQENR-VAPAYLFSGTRGVGKTTIARIFAKALNCETAPT---------GEPCNTCEQCRKV 82 (624)
T ss_pred CCHHHhcCCHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhccccCCCC---------CCCCcccHHHHHH
Confidence 445778999988888888887432 246788999999999999999998753211000 0000000001111
Q ss_pred HHHHh----CCCCCCCcChhhhHHHHHHH-----HccCcEEEEEcCCCCH--HHHHHhc---CCC-CCc--------Ccc
Q 045345 191 LSELL----KLPDTSTWNVYDGLKMIGSR-----LRYRKVLLIVDAAFDL--KQLESLA---GKH-EWF--------DEH 247 (445)
Q Consensus 191 l~~l~----~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~l~~l~---~~~-~~~--------~~~ 247 (445)
..... .........+++ +..+.+. ..+++-++|||+++.. .....|+ ... ... ...
T Consensus 83 ~~g~hpDv~eId~a~~~~Id~-iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~k 161 (624)
T PRK14959 83 TQGMHVDVVEIDGASNRGIDD-AKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHK 161 (624)
T ss_pred hcCCCCceEEEecccccCHHH-HHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhh
Confidence 10000 000000001111 1112222 2346679999999744 3333333 211 110 111
Q ss_pred ccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCCh-HHHHHHHHhh
Q 045345 248 LLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLP-LALKVLGSFL 311 (445)
Q Consensus 248 vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~~~~L 311 (445)
++.|. .....+++++++.++..+.+...+...... -..+.+..|++.++|.+ .|+..+...+
T Consensus 162 ll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~--id~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 162 FPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVD--YDPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred hhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 22111 113468999999999998888766433221 12356788999999965 5777665443
No 75
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.20 E-value=0.0003 Score=71.01 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=99.7
Q ss_pred ccc-cccchh--HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHHHH
Q 045345 114 KDL-VGMDSC--WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 114 ~~~-vGr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~ 188 (445)
++| +|.... .....++..........+.|+|++|+|||+|++++++.+..+++. ++++. ...+..
T Consensus 122 d~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~ 191 (450)
T PRK00149 122 DNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTN 191 (450)
T ss_pred cccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHH
Confidence 444 465443 233333333222234568899999999999999999987666543 33443 112222
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-------HH----HHhcCCCCCc-------------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-------QL----ESLAGKHEWF------------- 244 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------~l----~~l~~~~~~~------------- 244 (445)
.+...+... . ...+.+.++ +.-+|||||++... .+ +.+.......
T Consensus 192 ~~~~~~~~~------~----~~~~~~~~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~ 260 (450)
T PRK00149 192 DFVNALRNN------T----MEEFKEKYR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPG 260 (450)
T ss_pred HHHHHHHcC------c----HHHHHHHHh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHH
Confidence 333333210 1 122334444 34478889996321 11 1111111000
Q ss_pred -CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh------CC--CC
Q 045345 245 -DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL------YG--KT 315 (445)
Q Consensus 245 -~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L------~~--~~ 315 (445)
+..+........++++++++.++-.+++.+.+-..... -.+++...|++.++|..-.|.-+-..| .+ -+
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~~~it 338 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGID--LPDEVLEFIAKNITSNVRELEGALNRLIAYASLTGKPIT 338 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhCCCCC
Confidence 11111111223468899999999999998887432211 223567888888888877554332222 12 24
Q ss_pred HHHHHHHHHHH
Q 045345 316 TKEWESAPKRL 326 (445)
Q Consensus 316 ~~~w~~~l~~l 326 (445)
....+.++..+
T Consensus 339 ~~~~~~~l~~~ 349 (450)
T PRK00149 339 LELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHh
Confidence 45556666554
No 76
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.20 E-value=9.3e-05 Score=71.00 Aligned_cols=166 Identities=17% Similarity=0.151 Sum_probs=92.3
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-----ccccceeeehhhhhhccCCHHHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-----EFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-----~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
.+++|-+...+.+...+..+. -.....++|+.|+||||+|..++..+-. .++....+... ......+..+ +
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~-~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i~v~~i-r 79 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNR-FSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSIGVDDI-R 79 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCC-CCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCCCHHHH-H
Confidence 568899888999999887432 2457789999999999999999986422 12222222100 0011111111 1
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCC--CHHHHHHhc---CCCCCcCc---------cccccc-C
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAF--DLKQLESLA---GKHEWFDE---------HLLMTH-G 253 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~--~~~~l~~l~---~~~~~~~~---------~vl~t~-~ 253 (445)
++...+.. .-..+++-++|+|+++ +....+.++ ..++.... .++.|. .
T Consensus 80 ~~~~~~~~-----------------~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S 142 (313)
T PRK05564 80 NIIEEVNK-----------------KPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS 142 (313)
T ss_pred HHHHHHhc-----------------CcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh
Confidence 11111110 0112455577777775 333333333 22222111 222221 1
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 254 VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 254 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
....+++.+++.++...++.... . .. + .+.+..++..++|.|.-+..
T Consensus 143 Rc~~~~~~~~~~~~~~~~l~~~~-~-~~-~---~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 143 RCQIYKLNRLSKEEIEKFISYKY-N-DI-K---EEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred hceeeeCCCcCHHHHHHHHHHHh-c-CC-C---HHHHHHHHHHcCCCHHHHHH
Confidence 23578999999999988886654 1 11 1 23367789999999875543
No 77
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=98.18 E-value=1.2e-05 Score=86.57 Aligned_cols=49 Identities=14% Similarity=0.139 Sum_probs=40.3
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+.+|||+.+++.+...|.... ..-+.++|++|+|||+||..+++++..
T Consensus 186 ld~~iGr~~ei~~~i~~l~r~~--~~n~lLvG~pGvGKTal~~~La~~i~~ 234 (852)
T TIGR03345 186 IDPVLGRDDEIRQMIDILLRRR--QNNPILTGEAGVGKTAVVEGLALRIAA 234 (852)
T ss_pred CCcccCCHHHHHHHHHHHhcCC--cCceeEECCCCCCHHHHHHHHHHHHhh
Confidence 3579999999999999887532 335569999999999999999998643
No 78
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.16 E-value=5.1e-05 Score=76.45 Aligned_cols=53 Identities=23% Similarity=0.312 Sum_probs=40.2
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...++.|.+..+++|...+.. +-...+-+.|+|++|+|||++|+++++.+...
T Consensus 180 ~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 180 TYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 346688899999988776531 11224568899999999999999999987554
No 79
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.15 E-value=5.2e-05 Score=66.96 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=31.3
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL 302 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 302 (445)
..+++.+++.++..+.+.+. + . + .+.+..|++.++|.|.
T Consensus 148 ~~~~~~~~~~~~~~~~l~~~--g--i-~---~~~~~~i~~~~~g~~r 186 (188)
T TIGR00678 148 QVLPFPPLSEEALLQWLIRQ--G--I-S---EEAAELLLALAGGSPG 186 (188)
T ss_pred EEeeCCCCCHHHHHHHHHHc--C--C-C---HHHHHHHHHHcCCCcc
Confidence 57899999999999988776 1 1 1 3568889999999985
No 80
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.15 E-value=0.00013 Score=75.36 Aligned_cols=188 Identities=18% Similarity=0.151 Sum_probs=100.0
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++||.+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-......- ........+.......+
T Consensus 21 ~~f~dliGq~~~v~~L~~~~~~gr-i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~----~~~~~~~cg~c~~C~~i 95 (598)
T PRK09111 21 QTFDDLIGQEAMVRTLTNAFETGR-IAQAFMLTGVRGVGKTTTARILARALNYEGPDGD----GGPTIDLCGVGEHCQAI 95 (598)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHhhCcCCcccc----CCCccccCcccHHHHHH
Confidence 455789999999999999887432 2346789999999999999999987532221000 00000000000111111
Q ss_pred HHHH----hCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCC-CC--c------Ccc
Q 045345 191 LSEL----LKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKH-EW--F------DEH 247 (445)
Q Consensus 191 l~~l----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~-~~--~------~~~ 247 (445)
.... ...........++. ..+.+.+ .+++-++|+|+++.. ...+.|+ ... .. | ..+
T Consensus 96 ~~g~h~Dv~e~~a~s~~gvd~I-ReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 96 MEGRHVDVLEMDAASHTGVDDI-REIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred hcCCCCceEEecccccCCHHHH-HHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 1100 00000011112221 1122222 234568999999743 2333333 111 11 1 112
Q ss_pred ccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 248 LLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 248 vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
++.|. .....+++.+++.++....+.+.+-..... -..+.+..|++.++|.+.-+..
T Consensus 175 ll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~--i~~eAl~lIa~~a~Gdlr~al~ 232 (598)
T PRK09111 175 VPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVE--VEDEALALIARAAEGSVRDGLS 232 (598)
T ss_pred hhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHH
Confidence 22221 123568999999999999998876333222 1235678889999999875543
No 81
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=0.0002 Score=74.10 Aligned_cols=185 Identities=15% Similarity=0.112 Sum_probs=96.6
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc--cccceeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE--FEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....++||-+..+..|...+..+. -...+.++|+.|+||||+|+.+++.+-.. .....|.... ....+......
T Consensus 13 ~~f~eivGQe~i~~~L~~~i~~~r-i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~---~~~Cg~C~sC~ 88 (620)
T PRK14954 13 SKFADITAQEHITHTIQNSLRMDR-VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEV---TEPCGECESCR 88 (620)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCcccccccc---CCCCccCHHHH
Confidence 445789999999999999887432 13457899999999999999999875321 1111111100 00011111111
Q ss_pred HHHHHHh----CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------C
Q 045345 189 QLLSELL----KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------D 245 (445)
Q Consensus 189 ~il~~l~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~ 245 (445)
.+..... ..........++... +.+.+ .+.+-++|+|+++.. ...+.|+ ...... .
T Consensus 89 ~~~~g~~~n~~~~d~~s~~~vd~Ir~-l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~ 167 (620)
T PRK14954 89 DFDAGTSLNISEFDAASNNSVDDIRQ-LRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTEL 167 (620)
T ss_pred HHhccCCCCeEEecccccCCHHHHHH-HHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 1110000 000001111222222 22222 345568899999754 2233332 222211 1
Q ss_pred cccccc-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH
Q 045345 246 EHLLMT-HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL 302 (445)
Q Consensus 246 ~~vl~t-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 302 (445)
..++.| ......+++.+++.++....+.+.+-..+.. -..+.+..|++.++|..-
T Consensus 168 ~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~--I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 168 HKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQ--IDADALQLIARKAQGSMR 223 (620)
T ss_pred hhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHH
Confidence 122211 1224568999999999888887765322211 123567889999999665
No 82
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00055 Score=69.25 Aligned_cols=182 Identities=16% Similarity=0.148 Sum_probs=97.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-----cccceeeehhhhhhc--cCCH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-----FEASSFLANVREISE--KGGL 183 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~--~~~~ 183 (445)
.....++|-+..+..|...+..+. -...+.++|+.|+||||+|+.++..+... .++... .+...+.. ..++
T Consensus 13 ~~f~diiGq~~i~~~L~~~i~~~~-i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c-~nc~~i~~g~~~d~ 90 (486)
T PRK14953 13 KFFKEVIGQEIVVRILKNAVKLQR-VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKC-ENCVEIDKGSFPDL 90 (486)
T ss_pred CcHHHccChHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCcc-HHHHHHhcCCCCcE
Confidence 345779999999999999987532 23567789999999999999998865311 011100 00000000 0000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCccccccc-
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTH- 252 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~- 252 (445)
.. + ........++ +..+.+.. .+++-++|+|+++.. ...+.++ ........-++.++
T Consensus 91 ~e--------i---daas~~gvd~-ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~ 158 (486)
T PRK14953 91 IE--------I---DAASNRGIDD-IRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTE 158 (486)
T ss_pred EE--------E---eCccCCCHHH-HHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 00 0 0000011111 12222222 245669999999743 2333332 22211111111111
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
.....+++.+++.++....+...+-..+.. ...+.+..|++.++|.+..+....
T Consensus 159 ~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~--id~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 159 YDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIE--YEEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 123468999999999998888766332221 223557778999999877554443
No 83
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.14 E-value=0.00057 Score=67.13 Aligned_cols=170 Identities=16% Similarity=0.206 Sum_probs=94.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc--------cccceeeehhhhhhccCC
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE--------FEASSFLANVREISEKGG 182 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~~ 182 (445)
....+++|.+..++.+.+.+..+. -.+.+.++|++|+|||++|..+++.+... |...++-. . .....+
T Consensus 14 ~~~~~iig~~~~~~~l~~~i~~~~-~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l--~-~~~~~~ 89 (367)
T PRK14970 14 QTFDDVVGQSHITNTLLNAIENNH-LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFEL--D-AASNNS 89 (367)
T ss_pred CcHHhcCCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEe--c-cccCCC
Confidence 345778999999999999887432 24578899999999999999998875431 11111100 0 000011
Q ss_pred HHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHhc---CCCCC---c------Cccc
Q 045345 183 LICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESLA---GKHEW---F------DEHL 248 (445)
Q Consensus 183 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~---~------~~~v 248 (445)
... ..+++..+.. .-..+++-++|+|+++.. ..++.++ ..... + ...+
T Consensus 90 ~~~-i~~l~~~~~~-----------------~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl 151 (367)
T PRK14970 90 VDD-IRNLIDQVRI-----------------PPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKI 151 (367)
T ss_pred HHH-HHHHHHHHhh-----------------ccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccC
Confidence 111 1111111100 001234568999998743 2233332 22111 0 1111
Q ss_pred ccc-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 249 LMT-HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 249 l~t-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
+.+ ......+++++++.++....+...+...+.. -..+.+..+++.++|.+-.+
T Consensus 152 ~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~--i~~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 152 IPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIK--FEDDALHIIAQKADGALRDA 206 (367)
T ss_pred CHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHhCCCCHHHH
Confidence 111 1123468999999999998888766433321 12366788889999877644
No 84
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.13 E-value=7.7e-05 Score=74.71 Aligned_cols=149 Identities=14% Similarity=0.107 Sum_probs=82.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS 214 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~ 214 (445)
...+.|+|++|+|||+|+.++++.+...++. +.|+. ...+...+...+... . ...+.+
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~------~----~~~f~~ 189 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG------K----LNEFRE 189 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc------c----HHHHHH
Confidence 4458899999999999999999987655432 34443 122333333333211 1 122333
Q ss_pred HHccCcEEEEEcCCCCH-------HHHHHhcCCCCCcCccccccc------------------CCCceEEcCCCCHHHHH
Q 045345 215 RLRYRKVLLIVDAAFDL-------KQLESLAGKHEWFDEHLLMTH------------------GVDEVHKLKVLHDDEAL 269 (445)
Q Consensus 215 ~l~~~~~LlVlDdv~~~-------~~l~~l~~~~~~~~~~vl~t~------------------~~~~~~~l~~L~~~ea~ 269 (445)
..+...-+|+|||++.. +.+-.+.......+..+++++ ....++++++.+.+.-.
T Consensus 190 ~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~ 269 (440)
T PRK14088 190 KYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRK 269 (440)
T ss_pred HHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHH
Confidence 44445568889998733 111111100000012233322 12346789999999999
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 270 QLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 270 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
+++.+.+...... -.++.+..|++.+.|.--.|.-+
T Consensus 270 ~IL~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R~L~g~ 305 (440)
T PRK14088 270 KIARKMLEIEHGE--LPEEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_pred HHHHHHHHhcCCC--CCHHHHHHHHhccccCHHHHHHH
Confidence 9888877332221 12456777888888776655433
No 85
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.10 E-value=5.3e-06 Score=79.67 Aligned_cols=95 Identities=13% Similarity=0.033 Sum_probs=59.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC-ccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChh-----hhHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH-EFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVY-----DGLK 210 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~-----~~~~ 210 (445)
....+|+|++|+||||||+.+++.+.. +|+..+|+..+.+. ...+.++++++...+............ ....
T Consensus 169 GQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 169 GQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred CceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 457789999999999999999998654 68888999854432 235667777776433222111111111 1111
Q ss_pred HHHHH-HccCcEEEEEcCCCCHHH
Q 045345 211 MIGSR-LRYRKVLLIVDAAFDLKQ 233 (445)
Q Consensus 211 ~l~~~-l~~~~~LlVlDdv~~~~~ 233 (445)
..... ..++.++|++|++.....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHHH
Confidence 11222 357999999999975543
No 86
>PF13173 AAA_14: AAA domain
Probab=98.09 E-value=4.9e-06 Score=68.60 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=26.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+++.|.|+.|+|||||+++++.... .....+++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~ 36 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN 36 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec
Confidence 5889999999999999999998765 223445554
No 87
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.07 E-value=0.00018 Score=71.73 Aligned_cols=147 Identities=14% Similarity=0.120 Sum_probs=79.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCcccc--ceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEA--SSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS 214 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~--~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~ 214 (445)
...+.|+|++|+|||+|++++++.+....+. ++++. ...+...+...+... . ...+.+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~------~----~~~~~~ 195 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN------K----MEEFKE 195 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC------C----HHHHHH
Confidence 3568899999999999999999987655432 33443 112223333333211 1 222333
Q ss_pred HHccCcEEEEEcCCCCHH---H-HHHhcCCCCC---cCccccccc------------------CCCceEEcCCCCHHHHH
Q 045345 215 RLRYRKVLLIVDAAFDLK---Q-LESLAGKHEW---FDEHLLMTH------------------GVDEVHKLKVLHDDEAL 269 (445)
Q Consensus 215 ~l~~~~~LlVlDdv~~~~---~-l~~l~~~~~~---~~~~vl~t~------------------~~~~~~~l~~L~~~ea~ 269 (445)
.+++ .-+|||||++... . .+.+...... .++.+++++ .....+.+++.+.++-.
T Consensus 196 ~~~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~ 274 (405)
T TIGR00362 196 KYRS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRL 274 (405)
T ss_pred HHHh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHH
Confidence 3433 3478899996421 1 1111100000 012222222 12245788888988888
Q ss_pred HHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 270 QLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 270 ~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
+++.+.+...... -.++....|++.+.|.+-.|.-
T Consensus 275 ~il~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~l~~ 309 (405)
T TIGR00362 275 AILQKKAEEEGLE--LPDEVLEFIAKNIRSNVRELEG 309 (405)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhcCCCHHHHHH
Confidence 8888777432221 1246677777888877765443
No 88
>CHL00095 clpC Clp protease ATP binding subunit
Probab=98.06 E-value=2.4e-05 Score=84.62 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=39.4
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++||+.+++.+.+.|.... .+-+.++|++|+|||++|..++.++.
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~--~~n~lL~G~pGvGKTal~~~la~~i~ 225 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT--KNNPILIGEPGVGKTAIAEGLAQRIV 225 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc--cCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999998543 23456999999999999999998754
No 89
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=98.06 E-value=0.00035 Score=64.27 Aligned_cols=173 Identities=18% Similarity=0.183 Sum_probs=99.6
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc--CccccceeeehhhhhhccCCHHHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
|....+++|-+..+..|...+.. ...+....+|++|.|||+-|++++..+- +-|+..+.-.+ .+...+..-..
T Consensus 32 Pkt~de~~gQe~vV~~L~~a~~~--~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~ln---aSderGisvvr 106 (346)
T KOG0989|consen 32 PKTFDELAGQEHVVQVLKNALLR--RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELN---ASDERGISVVR 106 (346)
T ss_pred CCcHHhhcchHHHHHHHHHHHhh--cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhc---ccccccccchh
Confidence 45567899999999999998875 3567889999999999999999998742 33554433222 12211111000
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHH--ccCc-EEEEEcCCCCH--HHHHHhcCCCCCc---CcccccccCC-----
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRL--RYRK-VLLIVDAAFDL--KQLESLAGKHEWF---DEHLLMTHGV----- 254 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~-~LlVlDdv~~~--~~l~~l~~~~~~~---~~~vl~t~~~----- 254 (445)
. ...+............ ..++ -++|||++++. +.+..+......+ .+-+++++..
T Consensus 107 ~------------Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~ 174 (346)
T KOG0989|consen 107 E------------KIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIR 174 (346)
T ss_pred h------------hhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCCh
Confidence 0 0001111000000000 0123 48899999854 3444443222221 2223333322
Q ss_pred -----CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCCh
Q 045345 255 -----DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 255 -----~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 301 (445)
...|..++|..++...-+...+-..+.. -..+..+.|++.++|--
T Consensus 175 pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~--~d~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 175 PLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVD--IDDDALKLIAKISDGDL 224 (346)
T ss_pred HHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCcH
Confidence 2347899999999998888887444432 23466788999988753
No 90
>PRK10865 protein disaggregation chaperone; Provisional
Probab=98.04 E-value=7.5e-05 Score=80.83 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=40.2
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+.++||+.+++.+...|.... ...+.++|++|+|||+||..++.++..
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 225 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRT--KNNPVLIGEPGVGKTAIVEGLAQRIIN 225 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCC--cCceEEECCCCCCHHHHHHHHHHHhhc
Confidence 569999999999999998543 335669999999999999999988643
No 91
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.04 E-value=3.2e-05 Score=73.00 Aligned_cols=114 Identities=22% Similarity=0.220 Sum_probs=77.7
Q ss_pred cccccccchhHHHHHhhhccCCCCe-EEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHH
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGV-RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLL 191 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~-~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il 191 (445)
.+.+.+|+.++..+..++...+... ..|.|+|-.|.|||.+.+++.+.... ..+|+. ..+-.....+.++|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~---~~vw~n----~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNL---ENVWLN----CVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCC---cceeee----hHHhccHHHHHHHHH
Confidence 3568899999999999998655443 45689999999999999999987622 457887 334466777788888
Q ss_pred HHHh-CCCCCCC-----cChhhhHHHHHH--HHc--cCcEEEEEcCCCCHHH
Q 045345 192 SELL-KLPDTST-----WNVYDGLKMIGS--RLR--YRKVLLIVDAAFDLKQ 233 (445)
Q Consensus 192 ~~l~-~~~~~~~-----~~~~~~~~~l~~--~l~--~~~~LlVlDdv~~~~~ 233 (445)
.... ...+... .+..+.+..+.+ ... ++.++|||||++...+
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD 129 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRD 129 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhc
Confidence 8774 2221111 122223333333 122 3589999999986654
No 92
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.04 E-value=5.3e-05 Score=82.20 Aligned_cols=48 Identities=15% Similarity=0.185 Sum_probs=39.9
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+.+|||+.+++.+...|.... ...+.++|++|+|||+||..++.++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~--~~n~lL~G~pGvGKT~l~~~la~~i~~ 220 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRT--KNNPVLIGEPGVGKTAIVEGLAQRIVN 220 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 569999999999999997543 335568999999999999999988644
No 93
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=98.03 E-value=0.0004 Score=71.43 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=98.0
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-----cccceeeehhhhhhccCCHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-----FEASSFLANVREISEKGGLIC 185 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----f~~~~~~~~~~~~~~~~~~~~ 185 (445)
....+++|-+..++.|...+..+. -...+.++|+.|+||||+|+.+++.+-.. +++.. ....+.+.....+.
T Consensus 13 ~~f~diiGqe~iv~~L~~~i~~~~-i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~-C~~C~~i~~~~~~d- 89 (563)
T PRK06647 13 RDFNSLEGQDFVVETLKHSIESNK-IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGE-CSSCKSIDNDNSLD- 89 (563)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCcc-chHHHHHHcCCCCC-
Confidence 455789999999999999987532 24578899999999999999999875321 11100 00001111100000
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHHH-----HccCcEEEEEcCCCCH--HHHHHhcCCCC---Cc---------Cc
Q 045345 186 LQKQLLSELLKLPDTSTWNVYDGLKMIGSR-----LRYRKVLLIVDAAFDL--KQLESLAGKHE---WF---------DE 246 (445)
Q Consensus 186 l~~~il~~l~~~~~~~~~~~~~~~~~l~~~-----l~~~~~LlVlDdv~~~--~~l~~l~~~~~---~~---------~~ 246 (445)
+...........++... +.+. ..+++-++|+|+++.. ...+.++.... .. -.
T Consensus 90 --------v~~idgas~~~vddIr~-l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~ 160 (563)
T PRK06647 90 --------VIEIDGASNTSVQDVRQ-IKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVH 160 (563)
T ss_pred --------eEEecCcccCCHHHHHH-HHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChH
Confidence 00000000111222111 2111 2356668999999744 33444432211 11 01
Q ss_pred cccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHH
Q 045345 247 HLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 247 ~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~ 305 (445)
.+..+. .....+++.+++.++..+.+...+...+.. -..+.+..|++.++|.+..+.
T Consensus 161 kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~--id~eAl~lLa~~s~GdlR~al 218 (563)
T PRK06647 161 KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIK--YEDEALKWIAYKSTGSVRDAY 218 (563)
T ss_pred HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 111111 123468999999999988888776433322 224567779999999886443
No 94
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.00 E-value=0.00027 Score=63.64 Aligned_cols=55 Identities=16% Similarity=0.277 Sum_probs=40.9
Q ss_pred ccccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+.....++|.+.+.+.|.+-... ......-+.+||..|+|||+|++++.+.+..+
T Consensus 23 ~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~ 79 (249)
T PF05673_consen 23 PIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ 79 (249)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc
Confidence 34557899999998888653321 11234567789999999999999999876554
No 95
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.99 E-value=0.00073 Score=70.64 Aligned_cols=182 Identities=17% Similarity=0.213 Sum_probs=97.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
.....++|.+..++.|...+..+. -...+.++|+.|+||||+|+.++..+-..-....+-. ...+ ...
T Consensus 15 ~~f~dIiGQe~~v~~L~~aI~~~r-l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p-C~~C----------~~~ 82 (725)
T PRK07133 15 KTFDDIVGQDHIVQTLKNIIKSNK-ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP-CQEC----------IEN 82 (725)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc-hhHH----------HHh
Confidence 455789999999999999887432 2456789999999999999999886422111000000 0000 000
Q ss_pred HHH---HhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------Cccc
Q 045345 191 LSE---LLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------DEHL 248 (445)
Q Consensus 191 l~~---l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~~~v 248 (445)
... +...........++ +..+.+.+ .+++-++|+|+++.. .....|+ ..++.. ...+
T Consensus 83 ~~~~~Dvieidaasn~~vd~-IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KL 161 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDE-IRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKI 161 (725)
T ss_pred hcCCCcEEEEeccccCCHHH-HHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhh
Confidence 000 00000000011111 22222222 246669999999733 3344443 111111 1122
Q ss_pred ccc-cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 045345 249 LMT-HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVL 307 (445)
Q Consensus 249 l~t-~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 307 (445)
+.| ......+++.+++.++..+.+...+-..+.. ...+.+..|++.++|.+. |+..+
T Consensus 162 l~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 162 PLTILSRVQRFNFRRISEDEIVSRLEFILEKENIS--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred hHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 1123578999999999998887755322211 123457789999999765 44433
No 96
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.96 E-value=0.00042 Score=62.28 Aligned_cols=190 Identities=18% Similarity=0.138 Sum_probs=103.6
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHH
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSEL 194 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l 194 (445)
.+++-...-+.|..+-..-.++.+++.++|.-|.|||.++++....+-+.=-.++.++ ....+...+...+...+
T Consensus 29 ~~~~~a~h~e~l~~l~~~i~d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 29 LDYWAADHNEALLMLHAAIADGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADL 103 (269)
T ss_pred hhhhhhhhhHHHHHHHHHHhcCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHh
Confidence 3444444444444433333345679999999999999999965554332211222222 22345556667777776
Q ss_pred hCCCCCCCc-ChhhhHHHHHHHH-ccCc-EEEEEcCCCCH--HHHHHh---cCCCCCc---Cccccccc-----------
Q 045345 195 LKLPDTSTW-NVYDGLKMIGSRL-RYRK-VLLIVDAAFDL--KQLESL---AGKHEWF---DEHLLMTH----------- 252 (445)
Q Consensus 195 ~~~~~~~~~-~~~~~~~~l~~~l-~~~~-~LlVlDdv~~~--~~l~~l---~~~~~~~---~~~vl~t~----------- 252 (445)
...+..... ........+.... ++++ +.+++|++.+. +.++.+ ....... -+.+++..
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~ 183 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPV 183 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHH
Confidence 652221111 1112222222222 4566 99999998643 333332 2111100 00111110
Q ss_pred ------CCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 253 ------GVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 253 ------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
|..-.|++.|++.++...++..+..+... .+--..+....|.....|.|.+|..++.
T Consensus 184 l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~ 247 (269)
T COG3267 184 LRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLAT 247 (269)
T ss_pred HHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHH
Confidence 11122899999999988888777644332 2223346677899999999999988764
No 97
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.95 E-value=1.2e-05 Score=77.59 Aligned_cols=95 Identities=13% Similarity=0.070 Sum_probs=61.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChh-h----hHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVY-D----GLK 210 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~-~----~~~ 210 (445)
...++|+|++|+|||||++.+++.+... |+..+|+..+.+ ....+.++++.++..+............ . ..+
T Consensus 168 Gq~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 168 GQRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CCEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 4578999999999999999999986555 888888874322 1357788888886554332221111111 1 111
Q ss_pred HHHHH-HccCcEEEEEcCCCCHHH
Q 045345 211 MIGSR-LRYRKVLLIVDAAFDLKQ 233 (445)
Q Consensus 211 ~l~~~-l~~~~~LlVlDdv~~~~~ 233 (445)
..... -.+++++|++|++.....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHHH
Confidence 11122 357999999999975543
No 98
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.00024 Score=71.26 Aligned_cols=187 Identities=17% Similarity=0.154 Sum_probs=95.9
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc---c-cceeee-hhhhhhccCCHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF---E-ASSFLA-NVREISEKGGLIC 185 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f---~-~~~~~~-~~~~~~~~~~~~~ 185 (445)
....+++|.+..++.|...+..+. -...+.++|++|+||||+|+.+++.+...- . ..|-.+ +...........
T Consensus 14 ~~~~diiGq~~~v~~L~~~i~~~~-i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d- 91 (451)
T PRK06305 14 QTFSEILGQDAVVAVLKNALRFNR-AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD- 91 (451)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc-
Confidence 445789999999999999887432 135678999999999999999998753210 0 000000 000010000000
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhHHHHHH-HHccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCccccccc-------
Q 045345 186 LQKQLLSELLKLPDTSTWNVYDGLKMIGS-RLRYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLLMTH------- 252 (445)
Q Consensus 186 l~~~il~~l~~~~~~~~~~~~~~~~~l~~-~l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl~t~------- 252 (445)
+ ..+.+.......++......+.. ...+.+-++|+|+++.. ...+.| +........-++++.
T Consensus 92 ----~-~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~ 166 (451)
T PRK06305 92 ----V-LEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPG 166 (451)
T ss_pred ----e-EEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcch
Confidence 0 00000000000111111111110 11256678999998744 223332 222211111111111
Q ss_pred ---CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHH
Q 045345 253 ---GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKV 306 (445)
Q Consensus 253 ---~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 306 (445)
.....+++.+++.++..+.+...+-..+.. -..+.+..|++.++|.+. |+..
T Consensus 167 tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~--i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 167 TILSRCQKMHLKRIPEETIIDKLALIAKQEGIE--TSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred HHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 123568999999999998887765322211 223567889999999775 4333
No 99
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.94 E-value=0.0018 Score=67.57 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=95.6
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc----ceeee-hhhhhhc--cCCH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA----SSFLA-NVREISE--KGGL 183 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~----~~~~~-~~~~~~~--~~~~ 183 (445)
.....++|.+...+.|...+..+. -...+.++|+.|+||||+|+.++..+...... .|=.+ ..+.+.. ..++
T Consensus 14 ~~f~~viGq~~~~~~L~~~i~~~~-l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~ 92 (614)
T PRK14971 14 STFESVVGQEALTTTLKNAIATNK-LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNI 92 (614)
T ss_pred CCHHHhcCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCce
Confidence 345789999999999999887432 24568899999999999999998865311100 00000 0000000 0000
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH----HccCcEEEEEcCCCCH--HHHHHh---cCCCCCc---------C
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR----LRYRKVLLIVDAAFDL--KQLESL---AGKHEWF---------D 245 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~---------~ 245 (445)
. . .........++....+... ..+++-++|+|+++.. ...+.| +...... .
T Consensus 93 ~--------~---ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~ 161 (614)
T PRK14971 93 H--------E---LDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEK 161 (614)
T ss_pred E--------E---ecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCc
Confidence 0 0 0000011112211111111 1234558899999743 233333 3322211 1
Q ss_pred ccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 246 EHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 246 ~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
..++.+. ....++++.+++.++....+...+-..+.. ...+.+..|++.+||...-+
T Consensus 162 ~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~--i~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 162 HKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGIT--AEPEALNVIAQKADGGMRDA 219 (614)
T ss_pred hhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHH
Confidence 2222221 123568999999999999888766333222 12345788999999977543
No 100
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.93 E-value=0.002 Score=65.55 Aligned_cols=185 Identities=16% Similarity=0.181 Sum_probs=97.6
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc-Ccccc--ceeeeh-hhhhhccCCHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS-HEFEA--SSFLAN-VREISEKGGLICL 186 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~--~~~~~~-~~~~~~~~~~~~l 186 (445)
....++||-+...+.|...+..+. -..+..++|+.|+||||+|+.++..+- ..... .|..+. .+........
T Consensus 11 ~~fdeiiGqe~v~~~L~~~I~~gr-l~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~--- 86 (535)
T PRK08451 11 KHFDELIGQESVSKTLSLALDNNR-LAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHI--- 86 (535)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCC---
Confidence 445789999999999999887432 245678999999999999999988742 11110 111110 0000000000
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHH----HccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCccccccc-----
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSR----LRYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTH----- 252 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~----l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~----- 252 (445)
.+...........++....+... ..++.-++|+|+++.. +..+.++ ...+....-++++.
T Consensus 87 ------dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL 160 (535)
T PRK08451 87 ------DIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKL 160 (535)
T ss_pred ------eEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhC
Confidence 00000000001122222222110 1135568999999743 3333332 22111111111111
Q ss_pred -----CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 253 -----GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 253 -----~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
.....+++.+++.++..+.+...+-..+.. -..+.+..|++.++|.+.-+..+
T Consensus 161 ~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~--i~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 161 PATILSRTQHFRFKQIPQNSIISHLKTILEKEGVS--YEPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred chHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCcHHHHHHH
Confidence 123568999999999999887766333222 12456788999999998655433
No 101
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.93 E-value=0.00016 Score=71.29 Aligned_cols=55 Identities=25% Similarity=0.301 Sum_probs=40.9
Q ss_pred cccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
....++.|.+...++|...+.. +-...+-+.|+|++|+|||+||+++++.....|
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 3446688999998888775531 112356788999999999999999998765443
No 102
>PRK06620 hypothetical protein; Validated
Probab=97.91 E-value=0.00015 Score=65.27 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.+.|+|++|+|||+|++.+++..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 568899999999999999987654
No 103
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.90 E-value=0.00022 Score=68.60 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=42.3
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
|....+++|.+...+.+..++..+. -..++.++|++|+|||++|+.+++...
T Consensus 17 P~~~~~~~~~~~~~~~l~~~~~~~~-~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 17 PSTIDECILPAADKETFKSIVKKGR-IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCcHHHhcCcHHHHHHHHHHHhcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 3456789999999999999887432 246777799999999999999988753
No 104
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.90 E-value=9.2e-05 Score=68.79 Aligned_cols=112 Identities=16% Similarity=0.126 Sum_probs=74.8
Q ss_pred cccccch---hHHHHHhhhccC-CCCeEEEEEEccCCCchhHHHHHHHhhccCccc------cceeeehhhhhhccCCHH
Q 045345 115 DLVGMDS---CWNTLRFLMDKE-PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE------ASSFLANVREISEKGGLI 184 (445)
Q Consensus 115 ~~vGr~~---~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~------~~~~~~~~~~~~~~~~~~ 184 (445)
.+||-.. .++.|..+|... ....+-+.|+|.+|+|||++++.+...+-..++ .++.+. .....+..
T Consensus 35 rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~ 110 (302)
T PF05621_consen 35 RWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDER 110 (302)
T ss_pred CeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChH
Confidence 4555443 355666666653 344677899999999999999999986543332 223333 45567888
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcc-CcEEEEEcCCCCH
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRY-RKVLLIVDAAFDL 231 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~ 231 (445)
.+...|+..++.... ...+...........++. +.-+||||++++.
T Consensus 111 ~~Y~~IL~~lgaP~~-~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~l 157 (302)
T PF05621_consen 111 RFYSAILEALGAPYR-PRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNL 157 (302)
T ss_pred HHHHHHHHHhCcccC-CCCCHHHHHHHHHHHHHHcCCcEEEeechHHH
Confidence 999999999985533 334444555555566654 5569999999764
No 105
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.90 E-value=2e-05 Score=65.02 Aligned_cols=24 Identities=42% Similarity=0.479 Sum_probs=21.5
Q ss_pred EEEEccCCCchhHHHHHHHhhccC
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
|.|+|++|+|||++|+.+++.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~ 24 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGF 24 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTS
T ss_pred CEEECcCCCCeeHHHHHHHhhccc
Confidence 579999999999999999998753
No 106
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.90 E-value=0.0032 Score=64.68 Aligned_cols=146 Identities=11% Similarity=0.128 Sum_probs=80.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccc--cceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFE--ASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~--~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
..+.|+|..|+|||.|+.++++.....+. .++|+. ...+...+...+... ....+++.
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~----------~~~~f~~~ 374 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG----------KGDSFRRR 374 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc----------cHHHHHHH
Confidence 45889999999999999999998654332 234443 222233333332210 11223333
Q ss_pred HccCcEEEEEcCCCCH---H----HHHHhcCCCCCcCcccccccC------------------CCceEEcCCCCHHHHHH
Q 045345 216 LRYRKVLLIVDAAFDL---K----QLESLAGKHEWFDEHLLMTHG------------------VDEVHKLKVLHDDEALQ 270 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~---~----~l~~l~~~~~~~~~~vl~t~~------------------~~~~~~l~~L~~~ea~~ 270 (445)
+++ .=+|||||++.. + .+-.++.....-++.+++++. ..-+++|++.+.+.-.+
T Consensus 375 y~~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 375 YRE-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIA 453 (617)
T ss_pred hhc-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHH
Confidence 433 347888998632 1 111111100000233444332 23457899999999999
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHH
Q 045345 271 LFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKV 306 (445)
Q Consensus 271 Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~ 306 (445)
++.+.+...... -..+++.-|++.+.+..-.|.-
T Consensus 454 IL~kka~~r~l~--l~~eVi~yLa~r~~rnvR~Leg 487 (617)
T PRK14086 454 ILRKKAVQEQLN--APPEVLEFIASRISRNIRELEG 487 (617)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHHhccCCHHHHHH
Confidence 998877433222 1245666777777766554443
No 107
>CHL00176 ftsH cell division protein; Validated
Probab=97.90 E-value=0.00024 Score=74.07 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=88.8
Q ss_pred ccccccccchhHHHHHhhhc---cC-------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMD---KE-------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~---~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
...+++|.+...+++...+. .. ..-.+-|.|+|++|+|||+||++++...... |+. ++
T Consensus 181 ~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is--- 248 (638)
T CHL00176 181 TFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS--- 248 (638)
T ss_pred CHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc---
Confidence 34678898887777666542 11 1113468899999999999999998865322 221 10
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH----------------HHHHhcCCCCCc-
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK----------------QLESLAGKHEWF- 244 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~l~~l~~~~~~~- 244 (445)
...+. ....+ .........+.......+.+|+|||++... .+..++...+.+
T Consensus 249 -~s~f~----~~~~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 249 -GSEFV----EMFVG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred -HHHHH----HHhhh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 00000 00000 011122233444456788999999996431 133333211111
Q ss_pred -----------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCC
Q 045345 245 -----------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGG 299 (445)
Q Consensus 245 -----------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G 299 (445)
+..++...+.+..+.++..+.++-.++++.++...... .......+++.+.|
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G 386 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS---PDVSLELIARRTPG 386 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCC
Confidence 11111112344678899999999999998877432211 12234567777776
No 108
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.00078 Score=69.84 Aligned_cols=184 Identities=17% Similarity=0.187 Sum_probs=94.8
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-ccc--cceeee-hhhhhhccCCHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-EFE--ASSFLA-NVREISEKGGLICL 186 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~--~~~~~~-~~~~~~~~~~~~~l 186 (445)
....++||.+...+.|...+..+. -...+.++|+.|+||||+|+.++..+-. +.. ..|-.+ ....+.......
T Consensus 13 ~~f~~iiGq~~v~~~L~~~i~~~~-~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~~~d-- 89 (576)
T PRK14965 13 QTFSDLTGQEHVSRTLQNAIDTGR-VAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGRSVD-- 89 (576)
T ss_pred CCHHHccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCCCCC--
Confidence 455789999999999999887432 2356789999999999999999887422 110 000000 000000000000
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC---
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG--- 253 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~--- 253 (445)
+...........++ +..+...+ .++.-++|+|+++.. ...+.|+ ........-++.|+.
T Consensus 90 -------~~eid~~s~~~v~~-ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 90 -------VFEIDGASNTGVDD-IRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred -------eeeeeccCccCHHH-HHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 00000000011111 12222222 234558999999743 2333332 222111111222221
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCCh-HHHHHH
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLP-LALKVL 307 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP-Lal~~~ 307 (445)
....+++.+++.++....+...+-..+.. -..+.+..|++.++|.. .|+..+
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~--i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGIS--ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 23457889999999888887655322211 12355777888888866 444444
No 109
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.89 E-value=0.0013 Score=68.58 Aligned_cols=185 Identities=18% Similarity=0.126 Sum_probs=98.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc-ccceeeehhhhhhccCCHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF-EASSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
.....++|.+.....|..++..+. -...+.++|+.|+||||+|+.++..+-... ..... ...+.......
T Consensus 13 ~~f~~liGq~~i~~~L~~~l~~~r-l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~--------~~Cg~C~~C~~ 83 (620)
T PRK14948 13 QRFDELVGQEAIATTLKNALISNR-IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP--------EPCGKCELCRA 83 (620)
T ss_pred CcHhhccChHHHHHHHHHHHHcCC-CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC--------CCCcccHHHHH
Confidence 445679999999999999888532 235678999999999999999998753221 10000 00111111111
Q ss_pred HHHHHhC----CCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCC-C--c------Cc
Q 045345 190 LLSELLK----LPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHE-W--F------DE 246 (445)
Q Consensus 190 il~~l~~----~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~-~--~------~~ 246 (445)
+...... .........+.. ..+...+ .+++-++|+|+++.. +..+.|+ .... . | ..
T Consensus 84 i~~g~h~D~~ei~~~~~~~vd~I-Reii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~ 162 (620)
T PRK14948 84 IAAGNALDVIEIDAASNTGVDNI-RELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQ 162 (620)
T ss_pred HhcCCCccEEEEeccccCCHHHH-HHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChh
Confidence 1111000 000011111111 1121222 245568999999843 3333333 2211 1 0 11
Q ss_pred cccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 247 HLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 247 ~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
.++.|. .....+++..++.++....+.+.+...... -..+.+..|++.++|.+..+..+
T Consensus 163 ~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~--is~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 163 RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIE--IEPEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCC--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 122221 123567888999999888887665332211 11245788999999988655433
No 110
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.89 E-value=0.00019 Score=73.41 Aligned_cols=171 Identities=19% Similarity=0.179 Sum_probs=90.2
Q ss_pred cccccccccchhHHHHHhhhc---c-------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMD---K-------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~---~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
....+++|.+...+++.+++. . +....+-+.++|++|+|||+||++++....-.| +. ++
T Consensus 52 ~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~-----~~----i~-- 120 (495)
T TIGR01241 52 VTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS----IS-- 120 (495)
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee----cc--
Confidence 345678998887766655443 1 112234588999999999999999998653322 11 00
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH----------------HHHHhcCCCCCc
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK----------------QLESLAGKHEWF 244 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----------------~l~~l~~~~~~~ 244 (445)
... +.....+. ........+.......+.+|+||+++... .+..++...+.+
T Consensus 121 --~~~----~~~~~~g~------~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~ 188 (495)
T TIGR01241 121 --GSD----FVEMFVGV------GASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF 188 (495)
T ss_pred --HHH----HHHHHhcc------cHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc
Confidence 000 11111100 11122223333445678899999986431 112222111111
Q ss_pred ------------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCC-hHHHH
Q 045345 245 ------------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGL-PLALK 305 (445)
Q Consensus 245 ------------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~ 305 (445)
+..++...+.+..+.++..+.++-.++|..+........ ......+++.+.|. +--|.
T Consensus 189 ~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~ 265 (495)
T TIGR01241 189 GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLA 265 (495)
T ss_pred cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHH
Confidence 112221223456788999999998999887763322211 11234677777764 33344
Q ss_pred HH
Q 045345 306 VL 307 (445)
Q Consensus 306 ~~ 307 (445)
.+
T Consensus 266 ~l 267 (495)
T TIGR01241 266 NL 267 (495)
T ss_pred HH
Confidence 33
No 111
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.86 E-value=5.2e-05 Score=62.85 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=27.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+.|+|++|+||||+|+.++..+.......+++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 47889999999999999999988765542344443
No 112
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.86 E-value=0.0013 Score=67.82 Aligned_cols=180 Identities=14% Similarity=0.142 Sum_probs=95.8
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-ccccceeeehhhhhhccCCHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-EFEASSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
....+++|.+...+.|...+..+. -...+.++|+.|+|||++|+.++..+-. +-... ...+.......
T Consensus 13 ~~f~~viGq~~v~~~L~~~i~~~~-~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~----------~pC~~C~~C~~ 81 (559)
T PRK05563 13 QTFEDVVGQEHITKTLKNAIKQGK-ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDG----------EPCNECEICKA 81 (559)
T ss_pred CcHHhccCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCC----------CCCCccHHHHH
Confidence 455789999999999999987543 2456778999999999999999876421 10000 00000001111
Q ss_pred HHHHHh----CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------Cc
Q 045345 190 LLSELL----KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------DE 246 (445)
Q Consensus 190 il~~l~----~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~~ 246 (445)
+..... ..........+. +..+.... .++.-++|+|+++.. .....|+ ...+.. ..
T Consensus 82 i~~g~~~dv~eidaas~~~vd~-ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 82 ITNGSLMDVIEIDAASNNGVDE-IRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HhcCCCCCeEEeeccccCCHHH-HHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 110000 000000011111 11222221 345668899999843 3344443 221110 11
Q ss_pred cccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 247 HLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 247 ~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
.+..|. .....+++.+++.++..+.+...+-..+... ..+.+..|++.++|.+.-+
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i--~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEY--EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 111111 1234578999999999888887663332221 2355777888888877643
No 113
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.85 E-value=0.00015 Score=76.83 Aligned_cols=46 Identities=17% Similarity=0.158 Sum_probs=38.5
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.++||+.+++.+.+.|.... ..-+.|+|++|+|||+||+.++..+
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~--~~n~LLvGppGvGKT~lae~la~~i 231 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRR--KNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999888632 2344689999999999999999864
No 114
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=0.00017 Score=66.68 Aligned_cols=84 Identities=21% Similarity=0.241 Sum_probs=52.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc----cCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS----SHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMI 212 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l 212 (445)
-|+|.++||||.|||+|++++++++ .+.|..+..+. + +-..++...+++-+ ..+......+
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liE----i----nshsLFSKWFsESg-------KlV~kmF~kI 241 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIE----I----NSHSLFSKWFSESG-------KLVAKMFQKI 241 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEE----E----ehhHHHHHHHhhhh-------hHHHHHHHHH
Confidence 5789999999999999999999974 34455555544 2 22233334433322 2234445556
Q ss_pred HHHHccCc--EEEEEcCCCCHHHHH
Q 045345 213 GSRLRYRK--VLLIVDAAFDLKQLE 235 (445)
Q Consensus 213 ~~~l~~~~--~LlVlDdv~~~~~l~ 235 (445)
.+.+..+. +++.+|.|++...-+
T Consensus 242 ~ELv~d~~~lVfvLIDEVESLa~aR 266 (423)
T KOG0744|consen 242 QELVEDRGNLVFVLIDEVESLAAAR 266 (423)
T ss_pred HHHHhCCCcEEEEEeHHHHHHHHHH
Confidence 66666544 567789997654433
No 115
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.84 E-value=0.00023 Score=65.17 Aligned_cols=50 Identities=14% Similarity=0.118 Sum_probs=33.3
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..+.++...-..+...+.++|.+|+|||+||.++++.+......++++.
T Consensus 85 l~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 85 LSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred HHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44444444332223457889999999999999999998755444455553
No 116
>PRK12377 putative replication protein; Provisional
Probab=97.83 E-value=0.00038 Score=63.91 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=28.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...+.|+|.+|+|||+||.++++.+......+.++.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357889999999999999999998765544456654
No 117
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.82 E-value=6.5e-05 Score=74.54 Aligned_cols=53 Identities=23% Similarity=0.320 Sum_probs=40.5
Q ss_pred cccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
..++.|.+..+++|...+.. +-...+-+.|+|++|+|||+||+++++.....|
T Consensus 182 ~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~f 245 (438)
T PTZ00361 182 YADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATF 245 (438)
T ss_pred HHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCE
Confidence 35678999999998886642 112245688999999999999999999876544
No 118
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.81 E-value=8.7e-05 Score=69.21 Aligned_cols=47 Identities=28% Similarity=0.313 Sum_probs=33.0
Q ss_pred cccccchhHHHHHhhhcc-------------CCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 115 DLVGMDSCWNTLRFLMDK-------------EPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++|.+...++|...... ..+....+.++|++|+||||+|+.+++.+
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 478877776665433210 12234567899999999999999998764
No 119
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.76 E-value=0.0015 Score=68.31 Aligned_cols=49 Identities=27% Similarity=0.344 Sum_probs=39.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+.++|++..+..+.+.+.. .....+.|+|++|+||||||+.+++..
T Consensus 151 ~~~~~iiGqs~~~~~l~~~ia~--~~~~~vlL~Gp~GtGKTTLAr~i~~~~ 199 (615)
T TIGR02903 151 RAFSEIVGQERAIKALLAKVAS--PFPQHIILYGPPGVGKTTAARLALEEA 199 (615)
T ss_pred CcHHhceeCcHHHHHHHHHHhc--CCCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 3456799999999988777653 234578999999999999999998754
No 120
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.76 E-value=8.8e-05 Score=67.54 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=35.8
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.|..+|..+-....++.|+|++|+|||+||.+++.........++|+.
T Consensus 11 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 11 MLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 445555544344679999999999999999999887644455677876
No 121
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0021 Score=61.31 Aligned_cols=183 Identities=10% Similarity=0.030 Sum_probs=98.8
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cC--------------ccccceeeehhhhhh
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SH--------------EFEASSFLANVREIS 178 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~--------------~f~~~~~~~~~~~~~ 178 (445)
.+++|.+...+.+...+..+. -.....++|+.|+||+++|.+++..+ .. .++...|+......
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~- 81 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH- 81 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc-
Confidence 568999999999999887432 14688999999999999999998864 22 12333444311000
Q ss_pred ccCCHHHHHHHHHHHHhCCCC-CCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHH---hcCCCCCcCcc
Q 045345 179 EKGGLICLQKQLLSELLKLPD-TSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLES---LAGKHEWFDEH 247 (445)
Q Consensus 179 ~~~~~~~l~~~il~~l~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~---l~~~~~~~~~~ 247 (445)
...... ...+...+.... ...-.+++ +..+.+.+ .+.+-++|+|+++.. ..... .+..++. ..-
T Consensus 82 ~g~~~~---~~~~~~~~~~~~~~~~I~id~-ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~-~~f 156 (314)
T PRK07399 82 QGKLIT---ASEAEEAGLKRKAPPQIRLEQ-IREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGN-GTL 156 (314)
T ss_pred cccccc---hhhhhhccccccccccCcHHH-HHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCC-CeE
Confidence 000000 000011110000 00111111 22333333 245678999998743 22222 2322222 122
Q ss_pred cccccC----------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 248 LLMTHG----------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 248 vl~t~~----------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
++++.. ....+++.+++.++..+.+........ .. .....++..++|.|.....+.
T Consensus 157 ILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~-~~----~~~~~l~~~a~Gs~~~al~~l 222 (314)
T PRK07399 157 ILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEI-LN----INFPELLALAQGSPGAAIANI 222 (314)
T ss_pred EEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhcccc-ch----hHHHHHHHHcCCCHHHHHHHH
Confidence 222221 235689999999999999987642111 11 113578999999997655433
No 122
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.69 E-value=9e-05 Score=72.86 Aligned_cols=56 Identities=21% Similarity=0.198 Sum_probs=42.7
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC--ccccceeee
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH--EFEASSFLA 172 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~--~f~~~~~~~ 172 (445)
..++++.+..++.+...|.. .+.+.++|++|+|||++|+.+++.+.. .+..+.|+.
T Consensus 174 l~d~~i~e~~le~l~~~L~~----~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI----KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 35678888889999888873 246778999999999999999987643 344555555
No 123
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.67 E-value=0.00087 Score=67.12 Aligned_cols=142 Identities=11% Similarity=0.035 Sum_probs=73.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
..-+.|+|++|+|||+|++++++.+......++++. ...+...+...+... ....++..+
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~----------~~~~f~~~~ 200 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG----------EMQRFRQFY 200 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc----------hHHHHHHHc
Confidence 356789999999999999999998754433344543 112222333332210 112233333
Q ss_pred ccCcEEEEEcCCCCHH-------HHHHhcCCCCCcCccccccc------------------CCCceEEcCCCCHHHHHHH
Q 045345 217 RYRKVLLIVDAAFDLK-------QLESLAGKHEWFDEHLLMTH------------------GVDEVHKLKVLHDDEALQL 271 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~~-------~l~~l~~~~~~~~~~vl~t~------------------~~~~~~~l~~L~~~ea~~L 271 (445)
+ ..-+|++||++... .+-.+......-+..++.++ ....++++.+++.++-.++
T Consensus 201 ~-~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~i 279 (445)
T PRK12422 201 R-NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSF 279 (445)
T ss_pred c-cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHH
Confidence 3 34578889986431 11111100000012233222 1224678888998888888
Q ss_pred HHHhhcCCCCCchHHHHHHHHHHHHhCCCh
Q 045345 272 FCKQAFKTNQPWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 272 f~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 301 (445)
+.+.+-..... -.++...-|++.+.|.-
T Consensus 280 L~~k~~~~~~~--l~~evl~~la~~~~~di 307 (445)
T PRK12422 280 LERKAEALSIR--IEETALDFLIEALSSNV 307 (445)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCH
Confidence 88776332211 12344555666555443
No 124
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.67 E-value=0.024 Score=55.39 Aligned_cols=58 Identities=14% Similarity=-0.007 Sum_probs=42.3
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCC------------------chHHHHHHHHHHHHhCCChHHHHHHHHhhCC
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQP------------------WKEYEQLSKYVVKYSGGLPLALKVLGSFLYG 313 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~------------------~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~ 313 (445)
..+.|.-.+++.|.++...+....... ......-....++.+||=-.=|..+++.++.
T Consensus 209 ~tI~L~Das~~~Ak~yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 209 KTISLSDASPESAKQYVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred eEEeecCCCHHHHHHHHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 557899999999999998887432110 0123444667888899999999999888876
No 125
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=97.67 E-value=0.001 Score=58.84 Aligned_cols=49 Identities=22% Similarity=0.266 Sum_probs=40.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
....++||-++-++.+.-.-. +++.+-+.|.||||+||||-+..+++.+
T Consensus 24 ~~l~dIVGNe~tv~rl~via~--~gnmP~liisGpPG~GKTTsi~~LAr~L 72 (333)
T KOG0991|consen 24 SVLQDIVGNEDTVERLSVIAK--EGNMPNLIISGPPGTGKTTSILCLAREL 72 (333)
T ss_pred hHHHHhhCCHHHHHHHHHHHH--cCCCCceEeeCCCCCchhhHHHHHHHHH
Confidence 445679999999988877665 3457788899999999999999998874
No 126
>PHA00729 NTP-binding motif containing protein
Probab=97.64 E-value=0.00069 Score=60.74 Aligned_cols=27 Identities=37% Similarity=0.222 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+...|.|+|.+|+||||||.++++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 455788999999999999999998753
No 127
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.0024 Score=61.36 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=32.8
Q ss_pred CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 255 DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 255 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...+.+.+++.+++.+.+.... . ... .+.+..++..++|.|+....+
T Consensus 157 c~~~~~~~~~~~~~~~~L~~~~-~-~~~----~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 157 CQQQACPLPSNEESLQWLQQAL-P-ESD----ERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred ceeeeCCCcCHHHHHHHHHHhc-c-cCC----hHHHHHHHHHcCCCHHHHHHH
Confidence 3568999999999999997653 1 111 233556788999999755443
No 128
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.56 E-value=0.00025 Score=65.01 Aligned_cols=48 Identities=19% Similarity=0.104 Sum_probs=33.5
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc------cccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE------FEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 172 (445)
.|..+|..+-....++.|+|++|+|||+||.+++...... -..++|+.
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 3445555443446799999999999999999997553222 25677776
No 129
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.54 E-value=0.001 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.283 Sum_probs=40.1
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..+++.|.+..++.|.+.+.. +-...+-+.|+|++|+|||+||+++++.....
T Consensus 176 ~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~ 239 (733)
T TIGR01243 176 TYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAY 239 (733)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCe
Confidence 345688999999998776632 11223568899999999999999999876543
No 130
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.54 E-value=0.00019 Score=64.47 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=33.7
Q ss_pred hhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 129 LMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 129 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+|..+-....++.|+|++|+|||+||.+++.........++|++
T Consensus 4 ~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 4 LLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred hhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 34433344679999999999999999999877655556678887
No 131
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.52 E-value=0.00019 Score=64.98 Aligned_cols=49 Identities=16% Similarity=0.144 Sum_probs=35.8
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..|..+|..+-....++.|.|.+|+||||||.+++.....+-..++|+.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4455666544344679999999999999999999887644444566765
No 132
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0012 Score=62.16 Aligned_cols=160 Identities=16% Similarity=0.202 Sum_probs=90.1
Q ss_pred ccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCC
Q 045345 114 KDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGG 182 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 182 (445)
...=|-+.++++|.+.... +-...+=|.+||+||.|||-||++++++....| +..++
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg------- 218 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG------- 218 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc-------
Confidence 4466889999999876542 112345688999999999999999999765544 33111
Q ss_pred HHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-ccCcEEEEEcCCCCHH----------------HHHHhcCCCCCc-
Q 045345 183 LICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL-RYRKVLLIVDAAFDLK----------------QLESLAGKHEWF- 244 (445)
Q Consensus 183 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~~----------------~l~~l~~~~~~~- 244 (445)
.++.....+.. ..++..+.+.- .+.|.+|.+|.++... .+-+|+...+.|
T Consensus 219 -----SElVqKYiGEG-------aRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD 286 (406)
T COG1222 219 -----SELVQKYIGEG-------ARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD 286 (406)
T ss_pred -----HHHHHHHhccc-------hHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC
Confidence 12222222111 12233333333 3578999999886321 122222222323
Q ss_pred -----------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHhCCCh
Q 045345 245 -----------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTN-QPWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 245 -----------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlP 301 (445)
+..++..-+.+..++++.-+.+.-.+.|.-|+.+-. ...-+ .+.+++.+.|.-
T Consensus 287 ~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~s 357 (406)
T COG1222 287 PRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFS 357 (406)
T ss_pred CCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCc
Confidence 233333334556788886677767778877763322 22223 344666666654
No 133
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.49 E-value=0.0014 Score=70.36 Aligned_cols=161 Identities=15% Similarity=0.169 Sum_probs=86.4
Q ss_pred cccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 113 FKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
-.++.|.+...+.|.+.+.. +-...+-+.++|++|+|||+||+++++.....|- .+. ..
T Consensus 452 ~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~~------ 521 (733)
T TIGR01243 452 WSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-GP------ 521 (733)
T ss_pred hhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-hH------
Confidence 35577888887777665431 1112345789999999999999999987654331 111 00
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHH-HHHHHHccCcEEEEEcCCCCHH--------------HHHHhcCCCCCc--
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLK-MIGSRLRYRKVLLIVDAAFDLK--------------QLESLAGKHEWF-- 244 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~~--------------~l~~l~~~~~~~-- 244 (445)
.++....+ ..+..+. .+...-...+.+|+||+++... .+..++...+.+
T Consensus 522 -------~l~~~~vG-------ese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~ 587 (733)
T TIGR01243 522 -------EILSKWVG-------ESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE 587 (733)
T ss_pred -------HHhhcccC-------cHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC
Confidence 11111110 1111122 2223334578999999986321 122222111100
Q ss_pred ----------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCCh
Q 045345 245 ----------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 245 ----------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 301 (445)
+..++...+.+..+.++..+.++-.++|..+..+... +..+ ...+++.+.|.-
T Consensus 588 ~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 588 LSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred CCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 2222222345667889999999999998766532221 1112 345666776654
No 134
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.48 E-value=0.00063 Score=61.91 Aligned_cols=48 Identities=21% Similarity=0.097 Sum_probs=34.3
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc------ccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF------EASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 172 (445)
.|..+|..+-....++.|+|++|+|||+||.+++....... ..++|+.
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 44455554334467999999999999999999987644333 4567776
No 135
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.48 E-value=0.0011 Score=66.89 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=35.7
Q ss_pred ccccccccchhHHHHHhhh---cc-----CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLM---DK-----EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L---~~-----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...++.|.+...+.+.... .. +-...+-|.++|++|+|||.+|+++++...-
T Consensus 226 ~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~ 285 (489)
T CHL00195 226 KISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL 285 (489)
T ss_pred CHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3456788876666655421 10 1123456889999999999999999987543
No 136
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.48 E-value=0.00026 Score=64.15 Aligned_cols=34 Identities=29% Similarity=0.433 Sum_probs=29.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.++|.|.+|.|||+|...+.......|..++++.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5679999999999999999998988997666554
No 137
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.46 E-value=0.0017 Score=63.41 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=70.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
....+.|||..|.|||.|++++.+......+....+. . ........+...+.. .....+++.
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~----------~~~~~Fk~~ 173 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRD----------NEMEKFKEK 173 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHh----------hhHHHHHHh
Confidence 3678899999999999999999998877776544443 1 122222233333221 123334444
Q ss_pred HccCcEEEEEcCCCCHH----HHHHhcCCCCCc---CcccccccC------------------CCceEEcCCCCHHHHHH
Q 045345 216 LRYRKVLLIVDAAFDLK----QLESLAGKHEWF---DEHLLMTHG------------------VDEVHKLKVLHDDEALQ 270 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~~----~l~~l~~~~~~~---~~~vl~t~~------------------~~~~~~l~~L~~~ea~~ 270 (445)
. .-=++++||++-.. .-+.+......+ +++++.|+. ..-++++.+++.+....
T Consensus 174 y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 174 Y--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLA 251 (408)
T ss_pred h--ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHH
Confidence 4 33378888885321 111111111111 334444442 23468899999999999
Q ss_pred HHHHhhc
Q 045345 271 LFCKQAF 277 (445)
Q Consensus 271 Lf~~~a~ 277 (445)
.+.+.+.
T Consensus 252 iL~kka~ 258 (408)
T COG0593 252 ILRKKAE 258 (408)
T ss_pred HHHHHHH
Confidence 9888663
No 138
>CHL00181 cbbX CbbX; Provisional
Probab=97.45 E-value=0.0038 Score=58.86 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+.++|++|+|||++|+.++..+
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999998764
No 139
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=0.00038 Score=69.62 Aligned_cols=95 Identities=20% Similarity=0.181 Sum_probs=62.0
Q ss_pred ccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
...++=|.+..+.+|..++.. +-...+=|.++|++|+|||.||++++.++.-.|- . ++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~-----~----isA-- 256 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFL-----S----ISA-- 256 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceE-----e----ecc--
Confidence 456788999999999887653 1112456889999999999999999987654432 2 111
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCC
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAF 229 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~ 229 (445)
-++.+.+. ..+.....+.+.+.-...|++++||+++
T Consensus 257 ------peivSGvS------GESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 257 ------PEIVSGVS------GESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred ------hhhhcccC------cccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 11222222 1222333444455556789999999987
No 140
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.45 E-value=0.0004 Score=66.50 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=41.0
Q ss_pred cccccchhHHHHHhhhccC----CCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 115 DLVGMDSCWNTLRFLMDKE----PYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+++|.++.++++.+++... ....++++|+|++|+||||||.++++.+..
T Consensus 52 ~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred hccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999998888641 234688999999999999999999987533
No 141
>PRK08116 hypothetical protein; Validated
Probab=97.44 E-value=0.00075 Score=62.97 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=27.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.-+.|+|.+|+|||.||.++++.+..+...++++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~ 149 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN 149 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35789999999999999999998755433445544
No 142
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.44 E-value=0.0025 Score=65.03 Aligned_cols=74 Identities=22% Similarity=0.282 Sum_probs=46.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccc-cceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFE-ASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~-~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
.+.|.|.|+.|+|||+||+++++.+..... .+.++. .. ......+..+++.+ ...+...
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~-Cs-~l~~~~~e~iQk~l------------------~~vfse~ 490 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVS-CS-TLDGSSLEKIQKFL------------------NNVFSEA 490 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEe-ch-hccchhHHHHHHHH------------------HHHHHHH
Confidence 467889999999999999999998764322 223333 11 11122233333322 2234556
Q ss_pred HccCcEEEEEcCCCC
Q 045345 216 LRYRKVLLIVDAAFD 230 (445)
Q Consensus 216 l~~~~~LlVlDdv~~ 230 (445)
+...|-+|||||++.
T Consensus 491 ~~~~PSiIvLDdld~ 505 (952)
T KOG0735|consen 491 LWYAPSIIVLDDLDC 505 (952)
T ss_pred HhhCCcEEEEcchhh
Confidence 677889999999863
No 143
>PRK08118 topology modulation protein; Reviewed
Probab=97.43 E-value=0.00013 Score=63.09 Aligned_cols=32 Identities=34% Similarity=0.428 Sum_probs=25.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC---cccccee
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH---EFEASSF 170 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~---~f~~~~~ 170 (445)
.|.|+|++|+||||||+.+++.+.- +|+..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 5889999999999999999987533 3555555
No 144
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.42 E-value=0.0032 Score=59.33 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=20.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
-+.|+|++|+|||++|+.++..+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~ 83 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILH 83 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999988887643
No 145
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.37 E-value=0.00014 Score=59.01 Aligned_cols=23 Identities=39% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|++|+||||+|+.+++.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.36 E-value=0.0026 Score=68.18 Aligned_cols=49 Identities=24% Similarity=0.369 Sum_probs=38.1
Q ss_pred ccccccchhHHHHHhhhccC------CCC-eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE------PYG-VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+...+... ++. ...+.++|++|+|||+||+.++..+.
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~ 509 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALG 509 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhc
Confidence 56889999988887776531 111 34678999999999999999998763
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.001 Score=69.66 Aligned_cols=114 Identities=18% Similarity=0.191 Sum_probs=70.8
Q ss_pred ccccccchhHHHHHhhhcc-------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDK-------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICL 186 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l 186 (445)
...+|-+..+..+.+.+.. .+.........||.|+|||.||++++..+...=...+-++ .++..+.++
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~D-MSEy~EkHs---- 565 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRID-MSEYMEKHS---- 565 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeec-hHHHHHHHH----
Confidence 5689999999998877653 2222567888999999999999999987654334444444 222222222
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcE-EEEEcCCC--CHHHHHHhc
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKV-LLIVDAAF--DLKQLESLA 238 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~--~~~~l~~l~ 238 (445)
.+.+.+.++.... .++ --.+-+..+++|| +|.||+++ +++.++-++
T Consensus 566 ----VSrLIGaPPGYVG-yee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilL 614 (786)
T COG0542 566 ----VSRLIGAPPGYVG-YEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLL 614 (786)
T ss_pred ----HHHHhCCCCCCce-ecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHH
Confidence 2333444332221 111 2235566678887 88899997 555555554
No 148
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.33 E-value=0.00086 Score=64.58 Aligned_cols=103 Identities=13% Similarity=0.041 Sum_probs=58.4
Q ss_pred HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccc--eeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCc
Q 045345 126 LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEAS--SFLANVREISEKGGLICLQKQLLSELLKLPDTSTW 203 (445)
Q Consensus 126 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~ 203 (445)
+.+.+..-. ....++|+|.+|+|||||++.+++.+..+.+.+ +|+. + ......+.++.+.+...+.........
T Consensus 123 vID~l~PiG-kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~l-I--gER~~EV~df~~~i~~~Vvast~de~~ 198 (380)
T PRK12608 123 VVDLVAPIG-KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLL-I--DERPEEVTDMRRSVKGEVYASTFDRPP 198 (380)
T ss_pred hhhheeecC-CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEE-e--cCCCCCHHHHHHHHhhhEEeecCCCCH
Confidence 444444311 234668999999999999999998876554333 3332 2 123456667777776655432211111
Q ss_pred Ch----hhhHHHHHHHH--ccCcEEEEEcCCCCHH
Q 045345 204 NV----YDGLKMIGSRL--RYRKVLLIVDAAFDLK 232 (445)
Q Consensus 204 ~~----~~~~~~l~~~l--~~~~~LlVlDdv~~~~ 232 (445)
.. ......+.+++ +++.++||+|++....
T Consensus 199 ~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 199 DEHIRVAELVLERAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcHHHH
Confidence 11 11111122222 4799999999986543
No 149
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.32 E-value=0.00033 Score=61.13 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=25.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.-+.|+|++|+|||.||.++++....+-..+.|+.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 46889999999999999999987544333456654
No 150
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.31 E-value=0.013 Score=58.09 Aligned_cols=227 Identities=18% Similarity=0.066 Sum_probs=113.4
Q ss_pred hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCC
Q 045345 121 SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDT 200 (445)
Q Consensus 121 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~ 200 (445)
.-+..+.+.+... ..++.|.|+-++|||||++.+.....+. .+++...........+ .+.
T Consensus 24 ~~~~~l~~~~~~~---~~i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l----~d~---------- 83 (398)
T COG1373 24 KLLPRLIKKLDLR---PFIILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIEL----LDL---------- 83 (398)
T ss_pred hhhHHHHhhcccC---CcEEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhH----HHH----------
Confidence 3344444444422 1299999999999999997777665444 4444311101101111 111
Q ss_pred CCcChhhhHHHHHHHHccCcEEEEEcCCCCHHHHHHhcCCC-CCcCccccccc---------------CCCceEEcCCCC
Q 045345 201 STWNVYDGLKMIGSRLRYRKVLLIVDAAFDLKQLESLAGKH-EWFDEHLLMTH---------------GVDEVHKLKVLH 264 (445)
Q Consensus 201 ~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~~~~-~~~~~~vl~t~---------------~~~~~~~l~~L~ 264 (445)
...+...-..++.+++||.|.....|...+... +.....++++. +....+++-|||
T Consensus 84 --------~~~~~~~~~~~~~yifLDEIq~v~~W~~~lk~l~d~~~~~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlS 155 (398)
T COG1373 84 --------LRAYIELKEREKSYIFLDEIQNVPDWERALKYLYDRGNLDVLITGSSSSLLSKEISESLAGRGKDLELYPLS 155 (398)
T ss_pred --------HHHHHHhhccCCceEEEecccCchhHHHHHHHHHccccceEEEECCchhhhccchhhhcCCCceeEEECCCC
Confidence 111111111277899999999888766554211 10010222222 123557899999
Q ss_pred HHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHHHhcCCchhHHHHHHHhh-c
Q 045345 265 DDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKRLERESENEILDILKISF-D 343 (445)
Q Consensus 265 ~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~-~ 343 (445)
..|-..+-.... ... .... .-+-.-..||.|-++..-...-. ........ . ..++.+..- .
T Consensus 156 F~Efl~~~~~~~----~~~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~~---~---~~Di~~~~~~~ 217 (398)
T COG1373 156 FREFLKLKGEEI----EPS-KLEL-LFEKYLETGGFPESVKADLSEKK------LKEYLDTI---L---KRDIIERGKIE 217 (398)
T ss_pred HHHHHhhccccc----chh-HHHH-HHHHHHHhCCCcHHHhCcchhhH------HHHHHHHH---H---HHHHHHHcCcc
Confidence 988876543111 000 1111 22233457999988753222110 11111110 0 011111111 1
Q ss_pred CCcHhHHHHHhhhhcc-CCCCCHHHHHHHHH-hCCCCchhcHHHHhhcCceEE
Q 045345 344 GLRETEKKIFLDIACF-YRGEDRDYVTKIID-YCDFDPVIGIRVLIDKSLIEI 394 (445)
Q Consensus 344 ~L~~~~k~~~~~la~f-~~~~~~~~l~~~~~-~~~~~~~~~l~~L~~~sLi~~ 394 (445)
.. ...++++..++-. +..++...+...+. .........++.|.+.-++..
T Consensus 218 ~~-~~~k~i~~~l~~~~g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~~ 269 (398)
T COG1373 218 NA-DLMKRILRFLASNIGSPISYSSLARELKGISKDTIRKYLSYLEDAFLLFL 269 (398)
T ss_pred cH-HHHHHHHHHHHhhcCCccCHHHHHHHHhccchHHHHHHHHHHHHhhheEE
Confidence 11 3556666555544 45588888888884 333334556777777777763
No 151
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.27 E-value=0.00064 Score=64.61 Aligned_cols=96 Identities=20% Similarity=0.071 Sum_probs=54.7
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCC----CC
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKL----PD 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~----~~ 199 (445)
.|..+|. .+-...+++-|+|++|+||||||.+++......-..++|++.-.. .+. ..+..++.. -.
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~----~~~-----~~a~~lGvd~~~l~v 112 (325)
T cd00983 42 SLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHA----LDP-----VYAKKLGVDLDNLLI 112 (325)
T ss_pred HHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcccc----HHH-----HHHHHcCCCHHHhee
Confidence 4445555 333456799999999999999999988765444456677762111 111 122222110 01
Q ss_pred CCCcChhhhHHHHHHHHc-cCcEEEEEcCCC
Q 045345 200 TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAF 229 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 229 (445)
..+.+.++....+....+ +..-+||+|-|.
T Consensus 113 ~~p~~~eq~l~i~~~li~s~~~~lIVIDSva 143 (325)
T cd00983 113 SQPDTGEQALEIADSLVRSGAVDLIVVDSVA 143 (325)
T ss_pred cCCCCHHHHHHHHHHHHhccCCCEEEEcchH
Confidence 122344555555555444 356789999874
No 152
>PRK06921 hypothetical protein; Provisional
Probab=97.27 E-value=0.00049 Score=64.09 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=28.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 172 (445)
..-+.++|.+|+|||+||.++++.+..+ ...++|+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 4578899999999999999999987654 34456665
No 153
>PRK07261 topology modulation protein; Provisional
Probab=97.23 E-value=0.0015 Score=56.65 Aligned_cols=23 Identities=43% Similarity=0.549 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|+|++|+||||||+.+....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 154
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.23 E-value=0.0028 Score=61.45 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=27.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+.++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 3579999999999999999999877643322334443
No 155
>PRK06762 hypothetical protein; Provisional
Probab=97.23 E-value=0.0019 Score=55.62 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|.|.|++|+||||+|+.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 588999999999999999998876
No 156
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.012 Score=56.03 Aligned_cols=83 Identities=18% Similarity=0.079 Sum_probs=49.4
Q ss_pred cCcEEEEEcCCCCH--HHHHHh---cCCC-CC--c------CcccccccC-CCceEEcCCCCHHHHHHHHHHhhcCCCCC
Q 045345 218 YRKVLLIVDAAFDL--KQLESL---AGKH-EW--F------DEHLLMTHG-VDEVHKLKVLHDDEALQLFCKQAFKTNQP 282 (445)
Q Consensus 218 ~~~~LlVlDdv~~~--~~l~~l---~~~~-~~--~------~~~vl~t~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 282 (445)
++.-++|||+++.. ..-..+ +..+ .. | ...++.|.+ ....+.+.+++.+++.+.+.... .+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~----~~ 187 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG----VS 187 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC----CC
Confidence 35569999999843 222222 2222 21 1 233333322 23568899999999999886531 11
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 283 WKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 283 ~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
...+..++..++|.|+....+.
T Consensus 188 ----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 188 ----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred ----hHHHHHHHHHcCCCHHHHHHHh
Confidence 1225678999999998664443
No 157
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.22 E-value=0.0086 Score=53.48 Aligned_cols=60 Identities=22% Similarity=0.233 Sum_probs=43.5
Q ss_pred CCccccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc
Q 045345 108 AKSEIFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA 167 (445)
Q Consensus 108 ~~~~~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 167 (445)
..+..-..++|.+...+.|.+-... ..-...-|.+||.-|+|||+|++++.+.+......
T Consensus 54 ~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 54 PDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred CCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 3334556799999988887553221 11224567899999999999999999988776655
No 158
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.22 E-value=0.0061 Score=60.67 Aligned_cols=29 Identities=28% Similarity=0.306 Sum_probs=24.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+|.++|++|+||||+|..++..+...
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~ 122 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKK 122 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 46789999999999999999998876544
No 159
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.21 E-value=0.00064 Score=64.57 Aligned_cols=97 Identities=19% Similarity=0.099 Sum_probs=55.1
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCC----CC
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKL----PD 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~----~~ 199 (445)
.|..+|. .+-...+++-|+|++|+||||||.+++......-..++|++.-. .+.. ..+..++.. ..
T Consensus 42 ~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~------~~~~---~~a~~lGvd~~~l~v 112 (321)
T TIGR02012 42 SLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH------ALDP---VYARKLGVDIDNLLV 112 (321)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc------hhHH---HHHHHcCCCHHHeEE
Confidence 4445554 34445679999999999999999998876544444566775211 1111 122222210 01
Q ss_pred CCCcChhhhHHHHHHHHc-cCcEEEEEcCCCC
Q 045345 200 TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAFD 230 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 230 (445)
..+.+.++....+....+ +..-+||+|-|..
T Consensus 113 ~~p~~~eq~l~~~~~li~~~~~~lIVIDSv~a 144 (321)
T TIGR02012 113 SQPDTGEQALEIAETLVRSGAVDIIVVDSVAA 144 (321)
T ss_pred ecCCCHHHHHHHHHHHhhccCCcEEEEcchhh
Confidence 122344455555554443 4567999998753
No 160
>PRK09354 recA recombinase A; Provisional
Probab=97.21 E-value=0.00073 Score=64.75 Aligned_cols=97 Identities=18% Similarity=0.082 Sum_probs=56.4
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCC----CC
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKL----PD 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~----~~ 199 (445)
.|..+|. .+-...+++-|+|++|+||||||.+++......-..++|++.- ...+. ..+..++.. -.
T Consensus 47 ~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E----~s~~~-----~~a~~lGvdld~lli 117 (349)
T PRK09354 47 ALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE----HALDP-----VYAKKLGVDIDNLLV 117 (349)
T ss_pred HHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc----cchHH-----HHHHHcCCCHHHeEE
Confidence 4445565 4444567999999999999999999887655444566777622 11111 122222210 01
Q ss_pred CCCcChhhhHHHHHHHHc-cCcEEEEEcCCCC
Q 045345 200 TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAFD 230 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 230 (445)
..+.+.++....+...++ +..-+||+|-|-.
T Consensus 118 ~qp~~~Eq~l~i~~~li~s~~~~lIVIDSvaa 149 (349)
T PRK09354 118 SQPDTGEQALEIADTLVRSGAVDLIVVDSVAA 149 (349)
T ss_pred ecCCCHHHHHHHHHHHhhcCCCCEEEEeChhh
Confidence 122344555555555444 3567899998753
No 161
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.21 E-value=0.00068 Score=64.74 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
-.+.++|||++|+|||.+|++++......
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~ 175 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE 175 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC
Confidence 36789999999999999999999987554
No 162
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0014 Score=68.70 Aligned_cols=47 Identities=15% Similarity=0.239 Sum_probs=39.2
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+..+||+.+++.+.+.|.....+.++ ++|.+|+|||+++.-++.++.
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNNPv--LiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNNPV--LVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCCCe--EecCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999875444333 689999999999999998853
No 163
>PRK06696 uridine kinase; Validated
Probab=97.18 E-value=0.00047 Score=62.65 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=35.2
Q ss_pred cchhHHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 119 MDSCWNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 119 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
|.+.+++|.+.+.. ...+..+|+|.|.+|+||||||+.++..+..
T Consensus 3 ~~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 3 RKQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 55667777666643 3446789999999999999999999987643
No 164
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.17 E-value=0.002 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.571 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|.+.|++|+||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 578999999999999999986543
No 165
>PRK10536 hypothetical protein; Provisional
Probab=97.15 E-value=0.0031 Score=57.59 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=40.5
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh-c-cCcccccee
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL-S-SHEFEASSF 170 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~f~~~~~ 170 (445)
....+.++......+..++.. ..++.+.|++|.|||+||.+++.+ + ...|...+.
T Consensus 53 ~~~~i~p~n~~Q~~~l~al~~----~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI 109 (262)
T PRK10536 53 DTSPILARNEAQAHYLKAIES----KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIV 109 (262)
T ss_pred CCccccCCCHHHHHHHHHHhc----CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEE
Confidence 335567788888888887763 249999999999999999998874 3 444554443
No 166
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.15 E-value=0.00058 Score=63.14 Aligned_cols=93 Identities=19% Similarity=0.134 Sum_probs=54.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCC------CCCCCcChhh---
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKL------PDTSTWNVYD--- 207 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~------~~~~~~~~~~--- 207 (445)
.+.++|.|.+|+|||+|+..+++....+|...+++.-+.+- ...+..+.+.+...-... ...+.....+
T Consensus 69 GQr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 69 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CCEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 45789999999999999999999988777777766543221 233344444443321000 0011111111
Q ss_pred --hHHHHHHHH--c-cCcEEEEEcCCCCH
Q 045345 208 --GLKMIGSRL--R-YRKVLLIVDAAFDL 231 (445)
Q Consensus 208 --~~~~l~~~l--~-~~~~LlVlDdv~~~ 231 (445)
..-.+.+++ + ++.+||++||+...
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~ 175 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRF 175 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHH
Confidence 111233444 3 88999999998643
No 167
>PRK07667 uridine kinase; Provisional
Probab=97.15 E-value=0.00065 Score=60.19 Aligned_cols=41 Identities=27% Similarity=0.285 Sum_probs=31.9
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
++.|.+.+........+|+|.|.+|.||||+|..+...+..
T Consensus 3 ~~~~~~~~~~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 3 TNELINIMKKHKENRFILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred HHHHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44555666554455689999999999999999999987654
No 168
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.15 E-value=0.00064 Score=70.46 Aligned_cols=53 Identities=17% Similarity=0.188 Sum_probs=43.1
Q ss_pred ccccccccccchhHHHHHhhhccCC---CCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEP---YGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~---~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
|....+++|-+..++++..++.... ...++++|+|++|+||||+++.++..+.
T Consensus 80 P~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 80 PETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3456789999999999999887522 2346799999999999999999998654
No 169
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.0013 Score=67.30 Aligned_cols=74 Identities=20% Similarity=0.318 Sum_probs=48.1
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
..++..++|++|+||||||.-++++.. |. ++=+. .|...+...+.+.|...+......+.
T Consensus 325 ~kKilLL~GppGlGKTTLAHViAkqaG--Ys-VvEIN----ASDeRt~~~v~~kI~~avq~~s~l~a------------- 384 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHVIAKQAG--YS-VVEIN----ASDERTAPMVKEKIENAVQNHSVLDA------------- 384 (877)
T ss_pred ccceEEeecCCCCChhHHHHHHHHhcC--ce-EEEec----ccccccHHHHHHHHHHHHhhcccccc-------------
Confidence 467999999999999999999987531 21 22233 45555555555555555443221111
Q ss_pred HccCcEEEEEcCCCC
Q 045345 216 LRYRKVLLIVDAAFD 230 (445)
Q Consensus 216 l~~~~~LlVlDdv~~ 230 (445)
.++|..||+|.++-
T Consensus 385 -dsrP~CLViDEIDG 398 (877)
T KOG1969|consen 385 -DSRPVCLVIDEIDG 398 (877)
T ss_pred -CCCcceEEEecccC
Confidence 26889999999984
No 170
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.0011 Score=61.42 Aligned_cols=37 Identities=22% Similarity=0.169 Sum_probs=28.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..-+.++|.+|+|||.||.++.+.+...--.+.|+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 4457789999999999999999999774334455554
No 171
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.013 Score=56.64 Aligned_cols=46 Identities=17% Similarity=0.052 Sum_probs=34.7
Q ss_pred cccc-cchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 115 DLVG-MDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 115 ~~vG-r~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++| -+..++.+...+..+. -.....++|+.|+|||++|..+++.+
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~~-l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKNR-LSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcCC-CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4566 5666777777776332 24577899999999999999998864
No 172
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.00068 Score=64.96 Aligned_cols=35 Identities=17% Similarity=0.144 Sum_probs=28.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.-+.|+|.+|+|||+||.++++.+......++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56889999999999999999998655444556655
No 173
>PRK08181 transposase; Validated
Probab=97.12 E-value=0.0017 Score=60.44 Aligned_cols=35 Identities=20% Similarity=0.025 Sum_probs=27.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.-+.|+|++|+|||.||.++++....+.-.+.|+.
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 35889999999999999999987655443455554
No 174
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.00067 Score=60.13 Aligned_cols=35 Identities=20% Similarity=0.295 Sum_probs=25.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+++.++|+.|+||||.+..++.++..+-..+..+.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis 36 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS 36 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeec
Confidence 68999999999999998888877554433444444
No 175
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.08 E-value=0.0048 Score=62.63 Aligned_cols=53 Identities=21% Similarity=0.247 Sum_probs=36.8
Q ss_pred ccccccchhHHHHHhhhc-----------cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 114 KDLVGMDSCWNTLRFLMD-----------KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~-----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
+++=|.++...+|.+... -+.+..+-|.++|+||+|||++|+++++.....|-
T Consensus 434 ~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 434 DDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred hhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 334456666666654332 12244677889999999999999999997666553
No 176
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.07 E-value=0.0055 Score=57.29 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++++++|++|+||||++..++..+...-..+.++.
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 4679999999999999999999877654433344443
No 177
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.07 E-value=0.016 Score=55.77 Aligned_cols=166 Identities=15% Similarity=0.076 Sum_probs=82.7
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-c-cc-cceeeeh-hhh--hhccCCHHHHHHHHHHHHh
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-E-FE-ASSFLAN-VRE--ISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~-~~~~~~~-~~~--~~~~~~~~~l~~~il~~l~ 195 (445)
..+.+.+.+..+. -...+.++|+.|+||+++|.+++..+-. + -. ..|=.+. .+. ....+++..+ .
T Consensus 10 ~~~~l~~~~~~~r-l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~ 80 (334)
T PRK07993 10 DYEQLVGSYQAGR-GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTL--------T 80 (334)
T ss_pred HHHHHHHHHHcCC-cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------e
Confidence 3445555555322 2457889999999999999999886421 1 00 0000000 000 0001111100 0
Q ss_pred CCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc---CCCCCc---------CcccccccC-CC
Q 045345 196 KLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA---GKHEWF---------DEHLLMTHG-VD 255 (445)
Q Consensus 196 ~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~---------~~~vl~t~~-~~ 255 (445)
.......-.+++ +..+.+.+ .++.-++|+|+++.. +.-..++ ..++.. ...++.|.+ ..
T Consensus 81 p~~~~~~I~idq-iR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC 159 (334)
T PRK07993 81 PEKGKSSLGVDA-VREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC 159 (334)
T ss_pred cccccccCCHHH-HHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc
Confidence 000000111222 22233333 246669999999843 3333332 222211 233444422 23
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
..+.+.+++.+++.+.+.... ..+ .+.+..++..++|.|...
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~---~~~----~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV---TMS----QDALLAALRLSAGAPGAA 201 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc---CCC----HHHHHHHHHHcCCCHHHH
Confidence 568999999999999886542 111 123667899999999643
No 178
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.0037 Score=62.78 Aligned_cols=117 Identities=18% Similarity=0.242 Sum_probs=69.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH-
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR- 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~- 215 (445)
..=|.+||++|+|||-||+++++.-..+|-.+ .+. +++....+. .+..+..+..+
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisV------------KGP-----ELlNkYVGE-------SErAVR~vFqRA 600 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISV------------KGP-----ELLNKYVGE-------SERAVRQVFQRA 600 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEee------------cCH-----HHHHHHhhh-------HHHHHHHHHHHh
Confidence 34577999999999999999999876665221 011 122222211 12333333333
Q ss_pred HccCcEEEEEcCCCCH-------------HHHHHhcCCCCCc------------------CcccccccCCCceEEcCCCC
Q 045345 216 LRYRKVLLIVDAAFDL-------------KQLESLAGKHEWF------------------DEHLLMTHGVDEVHKLKVLH 264 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~-------------~~l~~l~~~~~~~------------------~~~vl~t~~~~~~~~l~~L~ 264 (445)
-...|++|.||.++.. ..+.+|+-..+.+ +..++.--+.+..+-|+.-+
T Consensus 601 R~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn 680 (802)
T KOG0733|consen 601 RASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPN 680 (802)
T ss_pred hcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCC
Confidence 3468999999998632 1233333211111 33333334455677888889
Q ss_pred HHHHHHHHHHhhc
Q 045345 265 DDEALQLFCKQAF 277 (445)
Q Consensus 265 ~~ea~~Lf~~~a~ 277 (445)
.+|-..+++...-
T Consensus 681 ~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 681 AEERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988774
No 179
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.06 E-value=0.0019 Score=63.11 Aligned_cols=49 Identities=22% Similarity=0.148 Sum_probs=35.4
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+.+.|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 4555566543334569999999999999999999987655444566664
No 180
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.06 E-value=0.026 Score=53.96 Aligned_cols=164 Identities=13% Similarity=0.073 Sum_probs=82.1
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-c-cc-cceeee-hhhh--hhccCCHHHHHHHHHHHHhC
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-E-FE-ASSFLA-NVRE--ISEKGGLICLQKQLLSELLK 196 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~-f~-~~~~~~-~~~~--~~~~~~~~~l~~~il~~l~~ 196 (445)
.+.|.+.+..+. -.....++|+.|+||+++|..++..+-. . .. ..|=.+ ..+. ....+++..+ .
T Consensus 11 ~~~l~~~~~~~r-l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~- 80 (325)
T PRK06871 11 YQQITQAFQQGL-GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHIL--------E- 80 (325)
T ss_pred HHHHHHHHHcCC-cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEE--------c-
Confidence 345555555322 2457789999999999999999986421 1 10 000000 0000 0001111100 0
Q ss_pred CCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc----CCCCCc--------CcccccccC-CCc
Q 045345 197 LPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA----GKHEWF--------DEHLLMTHG-VDE 256 (445)
Q Consensus 197 ~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~----~~~~~~--------~~~vl~t~~-~~~ 256 (445)
......-.+++ +..+.+.+ .++.-++|+|+++.. .....++ .++... ...++.|.+ ...
T Consensus 81 p~~~~~I~id~-iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~ 159 (325)
T PRK06871 81 PIDNKDIGVDQ-VREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQ 159 (325)
T ss_pred cccCCCCCHHH-HHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhce
Confidence 00000111222 22222232 245568889999843 3333332 222211 234444422 246
Q ss_pred eEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 257 VHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 257 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
.+.+.+++.+++.+.+..... ... ..+..++..++|.|+..
T Consensus 160 ~~~~~~~~~~~~~~~L~~~~~---~~~----~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 160 TWLIHPPEEQQALDWLQAQSS---AEI----SEILTALRINYGRPLLA 200 (325)
T ss_pred EEeCCCCCHHHHHHHHHHHhc---cCh----HHHHHHHHHcCCCHHHH
Confidence 789999999999998877541 111 12556788999999633
No 181
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.06 E-value=0.00048 Score=57.41 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=27.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc-cccc-eeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE-FEAS-SFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~-~~~~ 172 (445)
-.|+|+||+|+|||||++.+++.++.. |... +|..
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~ 42 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITP 42 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEee
Confidence 368899999999999999999987665 5533 4433
No 182
>PRK06526 transposase; Provisional
Probab=97.05 E-value=0.0013 Score=60.84 Aligned_cols=27 Identities=26% Similarity=0.142 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..-+.|+|++|+|||+||.++......
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~ 124 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQ 124 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHH
Confidence 346889999999999999999887543
No 183
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.019 Score=60.10 Aligned_cols=168 Identities=18% Similarity=0.204 Sum_probs=94.5
Q ss_pred ccccccccchhHHHHHh---hhccCC-------CCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRF---LMDKEP-------YGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~---~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
...++.|-++..++|.+ .|..+. .-++=+.|+|++|.|||-||++++-.-. +-|+. ++.
T Consensus 309 ~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~s----vSG-- 377 (774)
T KOG0731|consen 309 KFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFS----VSG-- 377 (774)
T ss_pred ccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccC-----Cceee----ech--
Confidence 45678898876666555 444211 1145578999999999999999987532 22232 110
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-----------------HHHHhcCCCCCc
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-----------------QLESLAGKHEWF 244 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-----------------~l~~l~~~~~~~ 244 (445)
.++...+.+.. .......+...-.+.|.++.+|+++... .+.+++...+.+
T Consensus 378 ------SEFvE~~~g~~------asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf 445 (774)
T KOG0731|consen 378 ------SEFVEMFVGVG------ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGF 445 (774)
T ss_pred ------HHHHHHhcccc------hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCC
Confidence 01111111110 0111122222334577888888775321 234443332222
Q ss_pred ------------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 245 ------------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 245 ------------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
+..++..-+.+..+.++.-+.....++|.-|+-..... .+..++++ |+..+-|++=|.
T Consensus 446 ~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~gad 521 (774)
T KOG0731|consen 446 ETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGAD 521 (774)
T ss_pred cCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHHH
Confidence 22222222345667888888889999999888444332 34456666 888998888664
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.04 E-value=0.0019 Score=61.44 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=35.1
Q ss_pred ccchhHHHHHhhhccCC--CCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 118 GMDSCWNTLRFLMDKEP--YGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~--~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
++...+.....++..-. ...+-+.|+|..|+|||.||.++++.+...-..+.|+.
T Consensus 135 ~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 34334444444444211 12456889999999999999999998765434455554
No 185
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=97.04 E-value=0.0014 Score=60.65 Aligned_cols=36 Identities=25% Similarity=0.166 Sum_probs=26.5
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|..+|..+-....+.=|+|++|+|||+||.+++-.
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~ 61 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVN 61 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHH
Confidence 555666533223458899999999999999888754
No 186
>PRK09183 transposase/IS protein; Provisional
Probab=97.02 E-value=0.0022 Score=59.61 Aligned_cols=25 Identities=32% Similarity=0.307 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+.|+|++|+|||+||.+++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~ 127 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAV 127 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677999999999999999987643
No 187
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.02 E-value=0.0028 Score=59.69 Aligned_cols=28 Identities=25% Similarity=0.214 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++++|+|++|+||||++..++..+..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~ 220 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVL 220 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3569999999999999999999876543
No 188
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.00 E-value=0.0015 Score=57.92 Aligned_cols=30 Identities=40% Similarity=0.488 Sum_probs=26.5
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..+.+|||.|.+|.||||+|+.++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 346799999999999999999999987755
No 189
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=96.99 E-value=0.0043 Score=57.67 Aligned_cols=99 Identities=21% Similarity=0.080 Sum_probs=58.6
Q ss_pred HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHH-HhCCCCCCCcC
Q 045345 126 LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSE-LLKLPDTSTWN 204 (445)
Q Consensus 126 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~-l~~~~~~~~~~ 204 (445)
|..+|..+-...+++=|+|+.|.||||||.+++-.....-..++|++.-+ ..+.. ...++... +.........+
T Consensus 49 LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDtE~----~l~p~-r~~~l~~~~~d~l~v~~~~~ 123 (279)
T COG0468 49 LDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDTEH----ALDPE-RAKQLGVDLLDNLLVSQPDT 123 (279)
T ss_pred HHHHhcCCcccceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeCCC----CCCHH-HHHHHHHhhhcceeEecCCC
Confidence 34445444455789999999999999999998876655555788887322 22222 23344444 22222233444
Q ss_pred hhhhHHHHHHHH---ccCcEEEEEcCCC
Q 045345 205 VYDGLKMIGSRL---RYRKVLLIVDAAF 229 (445)
Q Consensus 205 ~~~~~~~l~~~l---~~~~~LlVlDdv~ 229 (445)
.++....+.... ..+--|+|+|.+-
T Consensus 124 ~e~q~~i~~~~~~~~~~~i~LvVVDSva 151 (279)
T COG0468 124 GEQQLEIAEKLARSGAEKIDLLVVDSVA 151 (279)
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEecCc
Confidence 444444433333 2335699999874
No 190
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.008 Score=59.50 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.8
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+...+.+.|++|+|||+||..++. ...|+.+-.+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~--~S~FPFvKiiS 571 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL--SSDFPFVKIIS 571 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh--hcCCCeEEEeC
Confidence 3466788999999999999999885 45677655543
No 191
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.99 E-value=0.0014 Score=58.31 Aligned_cols=91 Identities=14% Similarity=0.177 Sum_probs=51.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee-ehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL-ANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~-~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
.+|.|.|++|.||||++..+...+.......++. .+..+.... .. ..+.. ... ...+.......++..+
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~-~~----~~~i~----q~~-vg~~~~~~~~~i~~aL 71 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHE-SK----RSLIN----QRE-VGLDTLSFENALKAAL 71 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccccc-Cc----cceee----ecc-cCCCccCHHHHHHHHh
Confidence 4789999999999999999887765443333332 211010000 00 00000 000 0111223455677778
Q ss_pred ccCcEEEEEcCCCCHHHHHHhc
Q 045345 217 RYRKVLLIVDAAFDLKQLESLA 238 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~~~l~~l~ 238 (445)
+..+=++++|++.+.+.+...+
T Consensus 72 r~~pd~ii~gEird~e~~~~~l 93 (198)
T cd01131 72 RQDPDVILVGEMRDLETIRLAL 93 (198)
T ss_pred cCCcCEEEEcCCCCHHHHHHHH
Confidence 8888899999998877655543
No 192
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.99 E-value=0.0033 Score=60.46 Aligned_cols=49 Identities=22% Similarity=0.142 Sum_probs=38.0
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+.++.+.|..+--...++.|-|-||||||||..+++.++..+. .+.++.
T Consensus 79 ~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs 127 (456)
T COG1066 79 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS 127 (456)
T ss_pred hHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence 5566677764333457999999999999999999999987666 666665
No 193
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.97 E-value=0.0019 Score=66.03 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=43.6
Q ss_pred ccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
.+-+|+++-.+.|.+++.- ++.+.++++.+|++|+|||.+|+.++.-+-..|.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 4568999999999888763 4456789999999999999999999988766553
No 194
>PRK08233 hypothetical protein; Provisional
Probab=96.97 E-value=0.003 Score=55.18 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|.+|+||||||..++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 36899999999999999999998753
No 195
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.97 E-value=0.0026 Score=54.22 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=26.1
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
++.|+|++|+|||+++..++......-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3679999999999999999887654434455554
No 196
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.94 E-value=0.0039 Score=55.27 Aligned_cols=25 Identities=44% Similarity=0.688 Sum_probs=22.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+|+|.|++|+||||||+.+...+..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 6999999999999999999988754
No 197
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.94 E-value=0.022 Score=57.52 Aligned_cols=177 Identities=20% Similarity=0.216 Sum_probs=95.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cCc---cc--cceeeehhhhhhccCCHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SHE---FE--ASSFLANVREISEKGGLI 184 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~---f~--~~~~~~~~~~~~~~~~~~ 184 (445)
....++||-+.....|...+..+.- .......|+-|+||||+|+-++..+ +.+ .. ..|..+ .++... ...
T Consensus 13 ~~F~evvGQe~v~~~L~nal~~~ri-~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~C--k~I~~g-~~~ 88 (515)
T COG2812 13 KTFDDVVGQEHVVKTLSNALENGRI-AHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISC--KEINEG-SLI 88 (515)
T ss_pred ccHHHhcccHHHHHHHHHHHHhCcc-hhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhh--HhhhcC-Ccc
Confidence 4456789999999999998875321 3456689999999999999998753 111 11 111111 111111 000
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCC--CHHHHHHhcC----CCCCc--------C
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAF--DLKQLESLAG----KHEWF--------D 245 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~--~~~~l~~l~~----~~~~~--------~ 245 (445)
++. .....+...+++ ++.+.+.. .++.-+.|+|.|+ +...+..++. ++..+ -
T Consensus 89 Dvi--------EiDaASn~gVdd-iR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~ 159 (515)
T COG2812 89 DVI--------EIDAASNTGVDD-IREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEP 159 (515)
T ss_pred cch--------hhhhhhccChHH-HHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCc
Confidence 000 000001111221 22233322 3455689999997 4455666652 22221 1
Q ss_pred ccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH
Q 045345 246 EHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL 302 (445)
Q Consensus 246 ~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL 302 (445)
.++..|- .....|.++.|+.++-...+...+...... ...+...-|++..+|-..
T Consensus 160 ~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~--~e~~aL~~ia~~a~Gs~R 215 (515)
T COG2812 160 QKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGIN--IEEDALSLIARAAEGSLR 215 (515)
T ss_pred CcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCChh
Confidence 1111111 123568999999998888887776433322 223556667777776443
No 198
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.93 E-value=0.0027 Score=55.24 Aligned_cols=28 Identities=32% Similarity=0.407 Sum_probs=23.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
+.|.+.|.||+||||+|++++..+++.-
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i 29 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEI 29 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhh
Confidence 4688999999999999999998766543
No 199
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.92 E-value=0.00095 Score=67.41 Aligned_cols=50 Identities=18% Similarity=0.241 Sum_probs=41.0
Q ss_pred ccccccchhHHHHHhhhc----cCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMD----KEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+++|.+..++.|...|. .-....+++.++||+|+|||+||+.++.-+..
T Consensus 76 ~d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 76 EEFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred hcccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 468999999999998882 23345679999999999999999999885443
No 200
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.92 E-value=0.0052 Score=66.65 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=39.2
Q ss_pred ccccccchhHHHHHhhhcc-------CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDK-------EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~-------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.+..++.+.+.+.. ......++.++|++|+|||.||++++..+..
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 5689999999999887642 1112457899999999999999999887643
No 201
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0043 Score=59.69 Aligned_cols=48 Identities=21% Similarity=0.090 Sum_probs=36.5
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++|-+.....+..+..........+.++|++|+||||+|.++++.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~ 49 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELL 49 (325)
T ss_pred CcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHh
Confidence 356777777777777664333344689999999999999999998764
No 202
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.90 E-value=0.0027 Score=60.57 Aligned_cols=49 Identities=12% Similarity=0.129 Sum_probs=33.3
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc--c----Cccccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS--S----HEFEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~--~----~~f~~~~~~~ 172 (445)
..|..+|..+-....++-|+|++|+|||+||.+++-.. . ..-..++|++
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId 137 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID 137 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE
Confidence 34555666444456789999999999999998877432 1 1123567776
No 203
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.89 E-value=0.011 Score=63.83 Aligned_cols=52 Identities=17% Similarity=0.302 Sum_probs=40.3
Q ss_pred ccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
...+|.+...+.|..++.. +....+++.++|++|+|||++|+.+++.+...|
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 4588999888888776542 222345889999999999999999999875544
No 204
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.88 E-value=0.011 Score=64.27 Aligned_cols=50 Identities=16% Similarity=0.327 Sum_probs=38.7
Q ss_pred cccccccchhHHHHHhhhccC------CCC-eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKE------PYG-VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++|.+..++.|...+... ++. ...+.++|++|+|||+||+.+++.+.
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~ 623 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMF 623 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhh
Confidence 356899999999988877531 111 24788999999999999999998654
No 205
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.0067 Score=60.06 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=33.8
Q ss_pred cccccccchh---HHHHHhhhccCC-----C-C-eEEEEEEccCCCchhHHHHHHHhh
Q 045345 113 FKDLVGMDSC---WNTLRFLMDKEP-----Y-G-VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 113 ~~~~vGr~~~---l~~l~~~L~~~~-----~-~-~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+.-|-|+. +++|.++|.... + . .+=|.++|++|.|||-||++++-.
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 3556777764 556666666422 1 1 456889999999999999999753
No 206
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.88 E-value=0.005 Score=63.10 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=78.1
Q ss_pred cccccccchhHHHHHhhhc---c--------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 113 FKDLVGMDSCWNTLRFLMD---K--------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~---~--------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
-....|.+...+.+.+... . +-...+.+.++|++|.|||.||++++......|-.+..-.
T Consensus 241 ~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~--------- 311 (494)
T COG0464 241 LDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE--------- 311 (494)
T ss_pred eehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH---------
Confidence 3445566655555544332 1 1123457889999999999999999996655554322211
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhh-HHHHHHHHccCcEEEEEcCCCCHH-------------HHHHhcCCCC---Cc
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDG-LKMIGSRLRYRKVLLIVDAAFDLK-------------QLESLAGKHE---WF 244 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~-~~~l~~~l~~~~~LlVlDdv~~~~-------------~l~~l~~~~~---~~ 244 (445)
++... ....+.. ...+....+..+..|.+|+++... .+..++...+ ..
T Consensus 312 --------l~sk~-------vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 312 --------LLSKW-------VGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred --------Hhccc-------cchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 11110 1111122 222333345788999999886321 2222221111 10
Q ss_pred ---------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhc
Q 045345 245 ---------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAF 277 (445)
Q Consensus 245 ---------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~ 277 (445)
+...+.+.+.+..+.++.-+.++..+.|..+..
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~ 424 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLR 424 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhc
Confidence 222222224456788999999999999998874
No 207
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.86 E-value=0.0079 Score=65.58 Aligned_cols=51 Identities=22% Similarity=0.347 Sum_probs=40.1
Q ss_pred cccccccchhHHHHHhhhccC------CCC-eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 113 FKDLVGMDSCWNTLRFLMDKE------PYG-VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~------~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...++|.+..++.+...+... ++. ...+.+.|++|+|||++|+.++..+..
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~ 621 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFD 621 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 356899999999998877641 111 356889999999999999999987543
No 208
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.86 E-value=0.0099 Score=56.84 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+++++|++|+||||++..++..+...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 46799999999999999999998876544
No 209
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=96.85 E-value=0.005 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.377 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|.|++|.||||+|+.+++++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999874
No 210
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.84 E-value=0.003 Score=60.77 Aligned_cols=49 Identities=18% Similarity=0.114 Sum_probs=33.1
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc--Cc----cccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS--HE----FEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~----f~~~~~~~ 172 (445)
..|..+|..+-....+.-|+|++|+|||+|+.+++-... .. -..++|++
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId 167 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID 167 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE
Confidence 345556664444467888999999999999998864321 11 13567776
No 211
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.83 E-value=0.0011 Score=55.90 Aligned_cols=35 Identities=31% Similarity=0.260 Sum_probs=29.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+|.|+|.+|.||||||+++..++...-..+.+++
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 58899999999999999999998876665666664
No 212
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.81 E-value=0.1 Score=49.75 Aligned_cols=165 Identities=13% Similarity=0.116 Sum_probs=82.0
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cCccc-cceeee-hhhh--hhccCCHHHHHHHHHHHHhCC
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEFE-ASSFLA-NVRE--ISEKGGLICLQKQLLSELLKL 197 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~-~~~~~~-~~~~--~~~~~~~~~l~~~il~~l~~~ 197 (445)
.+.+...+..+. -...+.++|+.|+||+++|..++..+ ..+-. ..|=.+ ..+. ....+++..+ ...
T Consensus 12 ~~~l~~~~~~~r-l~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i--------~p~ 82 (319)
T PRK06090 12 WQNWKAGLDAGR-IPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI--------KPE 82 (319)
T ss_pred HHHHHHHHHcCC-cceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE--------ecC
Confidence 344555554321 24578899999999999999998863 22111 000000 0000 0001111000 000
Q ss_pred CCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHhc----CCCCCc--------CcccccccC-CCce
Q 045345 198 PDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESLA----GKHEWF--------DEHLLMTHG-VDEV 257 (445)
Q Consensus 198 ~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l~----~~~~~~--------~~~vl~t~~-~~~~ 257 (445)
.....-.+++ +..+.+.+ .++.-++|+|+++.. .....++ .++... ...++.|.+ ....
T Consensus 83 ~~~~~I~vdq-iR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 83 KEGKSITVEQ-IRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred cCCCcCCHHH-HHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 0001111222 22223333 234568999999843 3333332 222211 223333332 2356
Q ss_pred EEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 258 HKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 258 ~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
+.+.+++.+++.+.+.... . . ....++..++|.|+....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~~----~-~-----~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKGQG----I-T-----VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred EeCCCCCHHHHHHHHHHcC----C-c-----hHHHHHHHcCCCHHHHHHH
Confidence 8999999999999886542 1 1 1345788999999866544
No 213
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.81 E-value=0.00096 Score=54.55 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|+|.|++|+||||||+.+..++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999875
No 214
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.81 E-value=0.0015 Score=65.04 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=37.7
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++||+..++.+...+..+ .-|.|.|++|+|||+||+.+.....
T Consensus 20 ~~i~gre~vI~lll~aalag----~hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred hhccCcHHHHHHHHHHHccC----CCEEEECCCChhHHHHHHHHHHHhc
Confidence 45899999999998877633 3677999999999999999998653
No 215
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=57.66 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=30.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+|.|.|++|+||||+|+.++..+...+...+++.
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 458999999999999999999998876666666664
No 216
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.80 E-value=0.0045 Score=59.43 Aligned_cols=49 Identities=14% Similarity=0.077 Sum_probs=33.6
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc------ccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF------EASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~ 172 (445)
..+..+|..+-....++-|+|++|+|||+||.+++....... ..++|++
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 344455554334467889999999999999999986532211 2567776
No 217
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.80 E-value=0.0044 Score=56.83 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=34.6
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..|.++|..+=....++.|.|++|+|||+||.++.......-..++|+.
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 3455556554445679999999999999999988765333345566665
No 218
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.79 E-value=0.005 Score=56.26 Aligned_cols=91 Identities=19% Similarity=0.196 Sum_probs=53.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeeh--hhhhhccCCHHHHHHHHHHHHhCCC------CCCCcChhhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLAN--VREISEKGGLICLQKQLLSELLKLP------DTSTWNVYDG 208 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~--~~~~~~~~~~~~l~~~il~~l~~~~------~~~~~~~~~~ 208 (445)
..+++|+|.+|+|||||++.+..-..... +.+++.. +...+ .........+++...+... +.+...-...
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt~-G~i~f~g~~i~~~~-~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPTS-GEILFEGKDITKLS-KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCCC-ceEEEcCcchhhcc-hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 45899999999999999999988655443 3333331 11111 1223333445555544221 1122233333
Q ss_pred HHHHHHHHccCcEEEEEcCCC
Q 045345 209 LKMIGSRLRYRKVLLIVDAAF 229 (445)
Q Consensus 209 ~~~l~~~l~~~~~LlVlDdv~ 229 (445)
.-.+.+.|.-++-|+|.|..-
T Consensus 117 Ri~IARALal~P~liV~DEpv 137 (268)
T COG4608 117 RIGIARALALNPKLIVADEPV 137 (268)
T ss_pred hHHHHHHHhhCCcEEEecCch
Confidence 445677888899999999764
No 219
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.76 E-value=0.005 Score=56.35 Aligned_cols=49 Identities=16% Similarity=0.034 Sum_probs=34.2
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..|..+|..+-....++.|+|.+|+|||+||.++......+-..++|+.
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3445555544445679999999999999999999765333334566665
No 220
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0016 Score=66.64 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=43.5
Q ss_pred ccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
.+-+|.+.-.+.|.++|.- ..-..++++++||||+|||+|++.++.-+...|-
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkfv 379 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFV 379 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEE
Confidence 4568999999999888763 2233579999999999999999999998877664
No 221
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.75 E-value=0.012 Score=64.10 Aligned_cols=49 Identities=20% Similarity=0.337 Sum_probs=38.2
Q ss_pred ccccccchhHHHHHhhhcc------CCCC-eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK------EPYG-VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~------~~~~-~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|-+..++.|...+.. ..+. ...+.++|++|+|||+||+.+++.+.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 5689999999999877652 1111 34577999999999999999998764
No 222
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.74 E-value=0.0066 Score=58.13 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=33.9
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc------cccceeee
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE------FEASSFLA 172 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 172 (445)
..+..+|..+-....++-|+|++|+|||+||.+++...... -..++|++
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 34455565443346788999999999999999998764311 12567776
No 223
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.68 E-value=0.014 Score=52.80 Aligned_cols=161 Identities=15% Similarity=0.248 Sum_probs=86.8
Q ss_pred cccccccchhHHH---HHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHH
Q 045345 113 FKDLVGMDSCWNT---LRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLIC 185 (445)
Q Consensus 113 ~~~~vGr~~~l~~---l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 185 (445)
.++.||.+..... |...|.. +....+-|..+|++|.|||.+|+++++...-.|- -+.
T Consensus 120 ~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l---~vk------------- 183 (368)
T COG1223 120 LDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK------------- 183 (368)
T ss_pred HhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceE---Eec-------------
Confidence 3568888776543 4555553 3344788999999999999999999987544321 111
Q ss_pred HHHHHHHHHhCCCCCCCcChhhhH-HHHHHHHccCcEEEEEcCCCCH--------------HHHHHhcCCCCCc--Cccc
Q 045345 186 LQKQLLSELLKLPDTSTWNVYDGL-KMIGSRLRYRKVLLIVDAAFDL--------------KQLESLAGKHEWF--DEHL 248 (445)
Q Consensus 186 l~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~--------------~~l~~l~~~~~~~--~~~v 248 (445)
..+++....+ +....+ +...+.-+..|+++.||.++-. +.+.+|+...+.+ +..|
T Consensus 184 -at~liGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGV 255 (368)
T COG1223 184 -ATELIGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGV 255 (368)
T ss_pred -hHHHHHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCce
Confidence 0122222221 111122 2223333458999999988643 1233333222222 1111
Q ss_pred ---ccc-----------cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCC
Q 045345 249 ---LMT-----------HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGL 300 (445)
Q Consensus 249 ---l~t-----------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl 300 (445)
..| ++.+..++...-+.+|-.+++...+-.-..+.. .-.+.++.+++|+
T Consensus 256 vtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~---~~~~~~~~~t~g~ 318 (368)
T COG1223 256 VTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVD---ADLRYLAAKTKGM 318 (368)
T ss_pred EEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccc---cCHHHHHHHhCCC
Confidence 111 223345677777888888888877722221111 1144566666664
No 224
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.67 E-value=0.016 Score=61.19 Aligned_cols=52 Identities=23% Similarity=0.248 Sum_probs=35.2
Q ss_pred cccccccchhHHHHHhhhccC----------CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKE----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..++.|.+...+.+.+.+... ..-.+-|.|+|++|+|||++|+.++......
T Consensus 151 ~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~ 212 (644)
T PRK10733 151 FADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP 212 (644)
T ss_pred HHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 345678777666665544310 0112348899999999999999998876543
No 225
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.66 E-value=0.0054 Score=61.60 Aligned_cols=50 Identities=20% Similarity=0.112 Sum_probs=35.7
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..+.+.|..+-....++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 44566666644334569999999999999999999887653333456665
No 226
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.66 E-value=0.0053 Score=61.72 Aligned_cols=50 Identities=22% Similarity=0.169 Sum_probs=36.4
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..|..+|..+-....++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 45666666644444679999999999999999999877644433456665
No 227
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=96.64 E-value=0.054 Score=50.15 Aligned_cols=122 Identities=17% Similarity=0.160 Sum_probs=73.0
Q ss_pred hcccCCCCCCCCCccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhh
Q 045345 97 KDILEMPSKIPAKSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVRE 176 (445)
Q Consensus 97 ~~v~~~p~~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 176 (445)
.....+++....+....+.|+|-..-.+.+ ..+.......+.+.++|+.|+|||+-++.+++.. +..+.+.
T Consensus 55 a~~le~~~~q~~~~~~~~~~l~tkt~r~~~-~~~~~A~k~g~l~~vyg~~g~gKt~a~~~y~~s~----p~~~l~~---- 125 (297)
T COG2842 55 AAFLEKKGVQAALEKLAPDFLETKTVRRIF-FRTRPASKTGSLVVVYGYAGLGKTQAAKNYAPSN----PNALLIE---- 125 (297)
T ss_pred HHHHcCCCcccccccccccccccchhHhHh-hhhhhhhhcCceEEEeccccchhHHHHHhhcccC----ccceeec----
Confidence 333344334445555677888876543222 2222222233488999999999999999988743 3333332
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCC
Q 045345 177 ISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFD 230 (445)
Q Consensus 177 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~ 230 (445)
.++......+...+....+.. ......+....+...+++..-+++.|+.+.
T Consensus 126 ~~p~~~a~~~i~~i~~~~~~~---~~~~~~d~~~~~~~~l~~~~~~iivDEA~~ 176 (297)
T COG2842 126 ADPSYTALVLILIICAAAFGA---TDGTINDLTERLMIRLRDTVRLIIVDEADR 176 (297)
T ss_pred CChhhHHHHHHHHHHHHHhcc---cchhHHHHHHHHHHHHccCcceeeeehhhc
Confidence 344444444555555554432 233445566667777788889999999874
No 228
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=96.63 E-value=0.0012 Score=53.42 Aligned_cols=30 Identities=30% Similarity=0.430 Sum_probs=21.4
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccce
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASS 169 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 169 (445)
|.|+|.+|+|||++|+.++..+...|..+-
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq 31 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ 31 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE
Confidence 679999999999999999998887776543
No 229
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.63 E-value=0.011 Score=58.05 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.++|+.|+||||.+..++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999998887654
No 230
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.61 E-value=0.004 Score=58.03 Aligned_cols=26 Identities=31% Similarity=0.440 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+.|.|+|.||+||||+|+.+...+..
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~ 27 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEE 27 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHh
Confidence 57899999999999999999886554
No 231
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.59 E-value=0.0069 Score=52.55 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
++.+.|++|+||||++..++..+...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~ 27 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKK 27 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 67899999999999999998876544
No 232
>PRK03839 putative kinase; Provisional
Probab=96.59 E-value=0.0018 Score=56.63 Aligned_cols=24 Identities=33% Similarity=0.630 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|.|++|+||||+|+.+++.+.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999998764
No 233
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.58 E-value=0.026 Score=60.67 Aligned_cols=52 Identities=15% Similarity=0.323 Sum_probs=41.2
Q ss_pred ccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
.+.+|.+...+.|..+|.. ......++.++|++|+||||+|+.++..+...|
T Consensus 322 ~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~ 377 (784)
T PRK10787 322 TDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred hhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 5689999999999877763 122356899999999999999999998765444
No 234
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.57 E-value=0.0021 Score=57.76 Aligned_cols=26 Identities=42% Similarity=0.617 Sum_probs=23.7
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+..+|+|.|.+|+||||||+.++..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999999876
No 235
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.57 E-value=0.058 Score=55.44 Aligned_cols=111 Identities=13% Similarity=0.044 Sum_probs=74.5
Q ss_pred ccccccccchhHHHHHhhhcc--CC-CCeEEEEEEccCCCchhHHHHHHHhhcc-----Ccccc--ceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK--EP-YGVRMIGICGMGGIGKTTLARVVYDLSS-----HEFEA--SSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~--~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~-----~~f~~--~~~~~~~~~~~~~~ 181 (445)
.+..+-+|+.+..+|...+.. .. .....+=|.|.+|.|||..+..|.+.+. ..-+. .+.++ .-.-.
T Consensus 394 vp~sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveIN----gm~l~ 469 (767)
T KOG1514|consen 394 VPESLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEIN----GLRLA 469 (767)
T ss_pred ccccccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEc----ceeec
Confidence 456788999999999988764 22 2345788999999999999999988642 11222 23333 23345
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc-----cCcEEEEEcCCCC
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR-----YRKVLLIVDAAFD 230 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~-----~~~~LlVlDdv~~ 230 (445)
+..++...|...+.+.... .......+..+.. .++++|++|+++.
T Consensus 470 ~~~~~Y~~I~~~lsg~~~~----~~~al~~L~~~f~~~k~~~~~~VvLiDElD~ 519 (767)
T KOG1514|consen 470 SPREIYEKIWEALSGERVT----WDAALEALNFRFTVPKPKRSTTVVLIDELDI 519 (767)
T ss_pred CHHHHHHHHHHhcccCccc----HHHHHHHHHHhhccCCCCCCCEEEEeccHHH
Confidence 6777888888887655433 3334444555543 3678999999863
No 236
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.57 E-value=0.0083 Score=57.36 Aligned_cols=37 Identities=22% Similarity=0.102 Sum_probs=28.4
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..|..+|..+-....++.|+|.+|+|||+|+..++..
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~ 119 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVT 119 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHH
Confidence 4555656544445679999999999999999988753
No 237
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.57 E-value=0.038 Score=54.94 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++.++|++|+||||+|..++..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 57899999999999999988887753
No 238
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.56 E-value=0.0018 Score=46.73 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|.+|+||||+|+.+.+.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999875
No 239
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.54 E-value=0.0091 Score=57.69 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+.++++|+|+.|+||||++..++..+..+-..+.++.
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 3679999999999999999998876533323455554
No 240
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.52 E-value=0.0015 Score=56.48 Aligned_cols=36 Identities=22% Similarity=0.223 Sum_probs=27.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc-Cccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 172 (445)
...+.+.|+.|+|||.||+.+++.+. ......+-++
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d 39 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID 39 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence 35788999999999999999999876 4444444444
No 241
>PTZ00035 Rad51 protein; Provisional
Probab=96.51 E-value=0.011 Score=56.99 Aligned_cols=37 Identities=19% Similarity=0.105 Sum_probs=28.7
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..|..+|..+-....++.|+|++|+|||||+..++-.
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~ 141 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVT 141 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHH
Confidence 4556666654445679999999999999999988754
No 242
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.49 E-value=0.013 Score=62.50 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=38.3
Q ss_pred ccccccchhHHHHHhhhccC------CC-CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE------PY-GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|-+..++.|...+... .+ ....+.++|++|+|||.||+.++..+.
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~ 513 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999888876621 11 135688999999999999999988763
No 243
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.48 E-value=0.0024 Score=53.25 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.5
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|.|+|++|+|||+||+.+++.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999877
No 244
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.48 E-value=0.0014 Score=52.03 Aligned_cols=25 Identities=40% Similarity=0.409 Sum_probs=21.0
Q ss_pred EEEEccCCCchhHHHHHHHhhccCc
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
|-|+|++|+|||+||..++..+.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 4689999999999999988876543
No 245
>PRK04328 hypothetical protein; Provisional
Probab=96.46 E-value=0.01 Score=54.82 Aligned_cols=48 Identities=13% Similarity=0.082 Sum_probs=33.3
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.|.++|..+-....++.|.|.+|.|||+||.++.......-..++|+.
T Consensus 11 ~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 11 GMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred hHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 444555543334578999999999999999998766333345566665
No 246
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.46 E-value=0.03 Score=55.40 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..+|.++|++|+||||+|..++..++.+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~ 127 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRK 127 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 5799999999999999999988765443
No 247
>PTZ00301 uridine kinase; Provisional
Probab=96.45 E-value=0.0025 Score=57.10 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+|+|.|.+|.||||||+.+.+++..
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~ 29 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMA 29 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 468999999999999999999877643
No 248
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.45 E-value=0.012 Score=49.65 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|.|.|.+|+||||||+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999988754
No 249
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.44 E-value=0.013 Score=58.47 Aligned_cols=36 Identities=17% Similarity=0.213 Sum_probs=26.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc--Cccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 172 (445)
.++++++|++|+||||++..++..+. .....+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46899999999999999988877654 2223445554
No 250
>PRK04132 replication factor C small subunit; Provisional
Probab=96.44 E-value=0.091 Score=56.49 Aligned_cols=141 Identities=13% Similarity=0.069 Sum_probs=76.8
Q ss_pred Ec--cCCCchhHHHHHHHhhcc-Cccc-cceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcc
Q 045345 143 CG--MGGIGKTTLARVVYDLSS-HEFE-ASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRY 218 (445)
Q Consensus 143 ~G--~gGiGKTtLA~~~~~~~~-~~f~-~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 218 (445)
.| |.++||||+|.++++++- +.+. ..+-++ .+...+...+. +++.......+. -..
T Consensus 570 ~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElN----ASd~rgid~IR-~iIk~~a~~~~~---------------~~~ 629 (846)
T PRK04132 570 GGNLPTVLHNTTAALALARELFGENWRHNFLELN----ASDERGINVIR-EKVKEFARTKPI---------------GGA 629 (846)
T ss_pred cCCCCCcccHHHHHHHHHHhhhcccccCeEEEEe----CCCcccHHHHH-HHHHHHHhcCCc---------------CCC
Confidence 37 889999999999999852 2222 223333 33323343322 333222211110 012
Q ss_pred CcEEEEEcCCCCH--HHHHHh---cCCCCC---c------Cccccccc-CCCceEEcCCCCHHHHHHHHHHhhcCCCCCc
Q 045345 219 RKVLLIVDAAFDL--KQLESL---AGKHEW---F------DEHLLMTH-GVDEVHKLKVLHDDEALQLFCKQAFKTNQPW 283 (445)
Q Consensus 219 ~~~LlVlDdv~~~--~~l~~l---~~~~~~---~------~~~vl~t~-~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~ 283 (445)
+.-++|||+++.. .....| +..+.. | ...++.+. .....+++.+++.++-.+.+...+-..+...
T Consensus 630 ~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi~i 709 (846)
T PRK04132 630 SFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLEL 709 (846)
T ss_pred CCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCCCC
Confidence 4579999999854 333333 322111 1 11222221 1245789999999998888876653222211
Q ss_pred hHHHHHHHHHHHHhCCChHHHH
Q 045345 284 KEYEQLSKYVVKYSGGLPLALK 305 (445)
Q Consensus 284 ~~~~~~~~~i~~~~~GlPLal~ 305 (445)
..+....|++.++|.+....
T Consensus 710 --~~e~L~~Ia~~s~GDlR~AI 729 (846)
T PRK04132 710 --TEEGLQAILYIAEGDMRRAI 729 (846)
T ss_pred --CHHHHHHHHHHcCCCHHHHH
Confidence 13567889999999885443
No 251
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.44 E-value=0.0083 Score=55.47 Aligned_cols=25 Identities=28% Similarity=0.511 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+|.|.|++|+||||+|+.+...+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999987643
No 252
>PRK04296 thymidine kinase; Provisional
Probab=96.43 E-value=0.0042 Score=54.87 Aligned_cols=34 Identities=15% Similarity=-0.108 Sum_probs=25.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.++.|+|+.|.||||+|..++.+...+...++++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~ 36 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVF 36 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 4788999999999999999988765443333433
No 253
>PRK04040 adenylate kinase; Provisional
Probab=96.43 E-value=0.0029 Score=55.71 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|+|++|+||||+++.+.+.+.
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 5899999999999999999998774
No 254
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.43 E-value=0.0082 Score=61.15 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=37.4
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..|..+|..+-....++.|.|++|+|||||+.+++.....+-..++++.
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s 298 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFA 298 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 55677777655455679999999999999999999887544444555554
No 255
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.42 E-value=0.0033 Score=56.41 Aligned_cols=27 Identities=44% Similarity=0.604 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|++|+||||||+.++..+.
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457999999999999999999987654
No 256
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.41 E-value=0.0079 Score=57.97 Aligned_cols=38 Identities=18% Similarity=0.096 Sum_probs=28.3
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|..+|..+-....++-|+|.+|+|||+||..++-.
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~ 146 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVT 146 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHH
Confidence 34555666544344678899999999999999888753
No 257
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.41 E-value=0.0099 Score=57.77 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+++++|++|+||||++..++.....
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~ 163 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVM 163 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 569999999999999999999987543
No 258
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.40 E-value=0.0029 Score=54.83 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...|.|+|++|+||||+|+.++..+.
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~ 29 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLG 29 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhC
Confidence 35889999999999999999998763
No 259
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=96.40 E-value=0.0055 Score=63.82 Aligned_cols=74 Identities=15% Similarity=0.250 Sum_probs=53.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-ccccceeeehhhhhhccCCHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-EFEASSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
.....++|.+..++.|...+..+ +.+.|+|++|+||||+|+.+++.+.. .++..+|+.+ .......+.+.
T Consensus 28 ~~~~~vigq~~a~~~L~~~~~~~----~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~n-----p~~~~~~~~~~ 98 (637)
T PRK13765 28 RLIDQVIGQEHAVEVIKKAAKQR----RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPN-----PEDPNNPKIRT 98 (637)
T ss_pred ccHHHcCChHHHHHHHHHHHHhC----CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeC-----CCcchHHHHHH
Confidence 45577999999999888877643 36889999999999999999987643 3577788774 23344444444
Q ss_pred HHHH
Q 045345 190 LLSE 193 (445)
Q Consensus 190 il~~ 193 (445)
++..
T Consensus 99 v~~~ 102 (637)
T PRK13765 99 VPAG 102 (637)
T ss_pred HHHh
Confidence 4443
No 260
>PRK00625 shikimate kinase; Provisional
Probab=96.40 E-value=0.0027 Score=55.05 Aligned_cols=24 Identities=29% Similarity=0.600 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|+||+|+||||+++.+++++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999988764
No 261
>PRK06547 hypothetical protein; Provisional
Probab=96.40 E-value=0.0048 Score=53.47 Aligned_cols=27 Identities=37% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
....+|+|.|++|+||||+|..+.+..
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 356799999999999999999998763
No 262
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.39 E-value=0.012 Score=53.35 Aligned_cols=24 Identities=50% Similarity=0.695 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|+|.|.+|+||||||+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998764
No 263
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.38 E-value=0.0044 Score=56.51 Aligned_cols=31 Identities=35% Similarity=0.574 Sum_probs=26.3
Q ss_pred CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 134 PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 134 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.....+++|.|++|.|||||++.+...+...
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 3457899999999999999999999876554
No 264
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.037 Score=53.29 Aligned_cols=52 Identities=23% Similarity=0.133 Sum_probs=34.6
Q ss_pred eEEcCCCCHHHHHHHHHHhhcCC----CCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 257 VHKLKVLHDDEALQLFCKQAFKT----NQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 257 ~~~l~~L~~~ea~~Lf~~~a~~~----~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
+++++..+.+|+..+.....-.. ..+. ++.-+++.-..+|+|--++-++.++
T Consensus 405 pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~ 460 (461)
T KOG3928|consen 405 PIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL 460 (461)
T ss_pred ccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence 46788999999988876554211 1121 3445677788899997777666654
No 265
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.36 E-value=0.25 Score=47.68 Aligned_cols=80 Identities=18% Similarity=0.080 Sum_probs=45.8
Q ss_pred cCcEEEEEcCCCC--HHHHHHhc----CCCCCc--------CcccccccC-CCceEEcCCCCHHHHHHHHHHhhcCCCCC
Q 045345 218 YRKVLLIVDAAFD--LKQLESLA----GKHEWF--------DEHLLMTHG-VDEVHKLKVLHDDEALQLFCKQAFKTNQP 282 (445)
Q Consensus 218 ~~~~LlVlDdv~~--~~~l~~l~----~~~~~~--------~~~vl~t~~-~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~ 282 (445)
++.-++|+|+++. .+....++ .+.... -..++.|.+ ....+.+.+++.++..+.+.... .+
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~ 206 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VA 206 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CC
Confidence 3455888999974 33333332 222211 223333321 23578999999999999987642 11
Q ss_pred chHHHHHHHHHHHHhCCChHHHHHH
Q 045345 283 WKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 283 ~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
. ...++..++|.|+....+
T Consensus 207 ~------~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D------ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h------HHHHHHHcCCCHHHHHHH
Confidence 1 123577889999754433
No 266
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=96.35 E-value=0.0029 Score=55.59 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999998764
No 267
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.35 E-value=0.0049 Score=50.62 Aligned_cols=40 Identities=20% Similarity=0.062 Sum_probs=28.1
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+..++.+.|...-....+|.+.|.-|.|||||++.++..+
T Consensus 7 ~t~~l~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 7 AMDKFGKAFAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3444444443321234589999999999999999999865
No 268
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.32 E-value=0.02 Score=48.44 Aligned_cols=89 Identities=25% Similarity=0.120 Sum_probs=43.9
Q ss_pred EEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcc--C
Q 045345 142 ICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRY--R 219 (445)
Q Consensus 142 I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~--~ 219 (445)
|.|+||+||||+|+.++.++ .|..+..-..++......+. +-.++-..+... ..-+.+-....+...+.. .
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s~--~g~~i~~~l~~g---~~vp~~~v~~ll~~~l~~~~~ 73 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDSE--LGKQIQEYLDNG---ELVPDELVIELLKERLEQPPC 73 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTSH--HHHHHHHHHHTT---SS--HHHHHHHHHHHHHSGGT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhhH--HHHHHHHHHHhh---ccchHHHHHHHHHHHHhhhcc
Confidence 68999999999999999865 22222221112221111111 112222222211 122233345556665543 2
Q ss_pred cEEEEEcCCC-CHHHHHHh
Q 045345 220 KVLLIVDAAF-DLKQLESL 237 (445)
Q Consensus 220 ~~LlVlDdv~-~~~~l~~l 237 (445)
..-+|||+.- +.+|.+.+
T Consensus 74 ~~g~ildGfPrt~~Qa~~l 92 (151)
T PF00406_consen 74 NRGFILDGFPRTLEQAEAL 92 (151)
T ss_dssp TTEEEEESB-SSHHHHHHH
T ss_pred cceeeeeeccccHHHHHHH
Confidence 4567899984 55665555
No 269
>PRK08356 hypothetical protein; Provisional
Probab=96.32 E-value=0.014 Score=51.69 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchhHHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVY 158 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~ 158 (445)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999994
No 270
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=96.31 E-value=0.038 Score=51.09 Aligned_cols=42 Identities=19% Similarity=0.255 Sum_probs=31.1
Q ss_pred chhHHHHHhhhccC-CCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 120 DSCWNTLRFLMDKE-PYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 120 ~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+..+..|...+..+ +.+.-+++++|.+|+||.-.++.+++.+
T Consensus 92 ~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 92 QLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 34455566666553 3446789999999999999999988764
No 271
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=96.31 E-value=0.0033 Score=54.70 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
++|.+.|++|+||||+|+.+.....
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988653
No 272
>PRK06851 hypothetical protein; Provisional
Probab=96.30 E-value=0.011 Score=57.24 Aligned_cols=36 Identities=17% Similarity=0.286 Sum_probs=28.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc-cCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS-SHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~ 172 (445)
.+++.|.|++|+|||||++.++... ...+...++.+
T Consensus 214 ~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 214 KNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred ceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 4789999999999999999999875 44455555544
No 273
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.30 E-value=0.016 Score=58.46 Aligned_cols=27 Identities=26% Similarity=0.245 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+++|+|++|+||||++..++..+..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~ 376 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAA 376 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999998876543
No 274
>PRK15453 phosphoribulokinase; Provisional
Probab=96.26 E-value=0.021 Score=53.00 Aligned_cols=28 Identities=25% Similarity=0.397 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+|+|.|.+|+||||+|+.+.+.+..
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4679999999999999999999876543
No 275
>PRK13947 shikimate kinase; Provisional
Probab=96.25 E-value=0.0036 Score=54.21 Aligned_cols=26 Identities=35% Similarity=0.358 Sum_probs=22.4
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.|.|+|++|+||||+|+.+++.+.-.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~ 28 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFG 28 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 47899999999999999999876443
No 276
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.24 E-value=0.035 Score=50.98 Aligned_cols=52 Identities=19% Similarity=0.146 Sum_probs=34.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHHHHH
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQLLSE 193 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~il~~ 193 (445)
...++.|.|.+|+|||++|.+++.....+ -..++|+. -......+...++..
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s------~E~~~~~~~~r~~~~ 64 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS------LEMSKEQLLQRLLAS 64 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe------CCCCHHHHHHHHHHH
Confidence 34689999999999999999988765433 33556654 223444555555443
No 277
>PRK10867 signal recognition particle protein; Provisional
Probab=96.22 E-value=0.017 Score=57.40 Aligned_cols=29 Identities=28% Similarity=0.327 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+|.++|++|+||||+|..++..+...
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 36799999999999999988888766544
No 278
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.21 E-value=0.0047 Score=53.72 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=23.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+|+|.|++|+||||+|+.++..+..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 459999999999999999999987643
No 279
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.21 E-value=0.0067 Score=55.17 Aligned_cols=41 Identities=24% Similarity=0.209 Sum_probs=28.3
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++.+.+.....+..+|+|+|+||.|||||..++...+..
T Consensus 15 ~~~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~~~ 55 (266)
T PF03308_consen 15 ARELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIRELRE 55 (266)
T ss_dssp HHHHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHHhh
Confidence 33444444433445789999999999999999998877544
No 280
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.20 E-value=0.004 Score=52.06 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=22.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+|+|.|++|+||||+|+.+++.+.-.
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~ 27 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLK 27 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCc
Confidence 68999999999999999999876433
No 281
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.20 E-value=0.011 Score=57.26 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=53.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee-hhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA-NVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
..+.|.|+.|.||||+...+...+.......++.. +..+.... .. ..+ ...... ..+.......++..|
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~-~~----~~~----i~q~ev-g~~~~~~~~~l~~~l 192 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHR-NK----RSL----INQREV-GLDTLSFANALRAAL 192 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhcc-Cc----cce----EEcccc-CCCCcCHHHHHHHhh
Confidence 58999999999999999998887654444444432 11111000 00 000 000000 111223456677888
Q ss_pred ccCcEEEEEcCCCCHHHHHHh
Q 045345 217 RYRKVLLIVDAAFDLKQLESL 237 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~~~l~~l 237 (445)
+..+=.|++|.+.+.+.....
T Consensus 193 r~~pd~i~vgEird~~~~~~~ 213 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELA 213 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHH
Confidence 899999999999887766543
No 282
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.19 E-value=0.021 Score=53.23 Aligned_cols=101 Identities=17% Similarity=0.110 Sum_probs=58.4
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCC
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTS 201 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~ 201 (445)
.++.+..++.. ...+|.|.|+.|.||||++.++...+...-..++.+.+..+.... +. .++. ..
T Consensus 68 ~~~~l~~~~~~---~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~-~~--------~q~~----v~ 131 (264)
T cd01129 68 NLEIFRKLLEK---PHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP-GI--------NQVQ----VN 131 (264)
T ss_pred HHHHHHHHHhc---CCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC-Cc--------eEEE----eC
Confidence 44455555542 235899999999999999999887664322233444322221110 00 0000 00
Q ss_pred CcChhhhHHHHHHHHccCcEEEEEcCCCCHHHHHHhc
Q 045345 202 TWNVYDGLKMIGSRLRYRKVLLIVDAAFDLKQLESLA 238 (445)
Q Consensus 202 ~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~l~ 238 (445)
...-......++..|+..+=.|+++++.+.+....++
T Consensus 132 ~~~~~~~~~~l~~~lR~~PD~i~vgEiR~~e~a~~~~ 168 (264)
T cd01129 132 EKAGLTFARGLRAILRQDPDIIMVGEIRDAETAEIAV 168 (264)
T ss_pred CcCCcCHHHHHHHHhccCCCEEEeccCCCHHHHHHHH
Confidence 0001134566777888899999999999887655443
No 283
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.18 E-value=0.005 Score=54.21 Aligned_cols=91 Identities=21% Similarity=0.206 Sum_probs=48.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHh-CCCCCCCcChhhhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELL-KLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~-~~~~~~~~~~~~~~~~l~~~ 215 (445)
...++|.|+.|.|||||++.+...+... ...+.+.+..+..... .... .+. ................+...
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 96 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLPH------PNWV-RLVTRPGNVEGSGEVTMADLLRSA 96 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCCC------CCEE-EEEEecCCCCCCCccCHHHHHHHH
Confidence 3589999999999999999998765432 2333333211111000 0000 000 00000011112234555666
Q ss_pred HccCcEEEEEcCCCCHHHHH
Q 045345 216 LRYRKVLLIVDAAFDLKQLE 235 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~~~l~ 235 (445)
++..+=.++++.+.+.+.+.
T Consensus 97 lR~~pd~i~igEir~~ea~~ 116 (186)
T cd01130 97 LRMRPDRIIVGEVRGGEALD 116 (186)
T ss_pred hccCCCEEEEEccCcHHHHH
Confidence 77778888888887776544
No 284
>PF13479 AAA_24: AAA domain
Probab=96.18 E-value=0.011 Score=53.17 Aligned_cols=20 Identities=50% Similarity=0.469 Sum_probs=17.7
Q ss_pred EEEEEEccCCCchhHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVV 157 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~ 157 (445)
-.+.|+|.+|+||||+|..+
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~ 23 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASL 23 (213)
T ss_pred eEEEEECCCCCCHHHHHHhC
Confidence 36789999999999999876
No 285
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.18 E-value=0.0074 Score=57.65 Aligned_cols=58 Identities=26% Similarity=0.265 Sum_probs=39.9
Q ss_pred ccccccccchhHHHH---HhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccce
Q 045345 112 IFKDLVGMDSCWNTL---RFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASS 169 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l---~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~ 169 (445)
....+||.....+.. .++...+.-..+.+.|.|++|.|||+||..+++.+....|.+.
T Consensus 22 ~~~GlVGQ~~AReAagiiv~mIk~~K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 22 IADGLVGQEKAREAAGIIVDMIKEGKIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp EETTEES-HHHHHHHHHHHHHHHTT--TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred ccccccChHHHHHHHHHHHHHHhcccccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 456899988766544 4555544434688999999999999999999999987655443
No 286
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=96.17 E-value=0.0034 Score=55.00 Aligned_cols=23 Identities=22% Similarity=0.206 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|.|.|++|+||||+|+.++..+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 47899999999999999998865
No 287
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.17 E-value=0.019 Score=55.06 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.6
Q ss_pred EEEEccCCCchhHHHHHHHhhcc
Q 045345 140 IGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+++.|++|.||||+++.+...+.
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHH
Confidence 67999999999999999998764
No 288
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=96.16 E-value=0.0063 Score=59.48 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=37.6
Q ss_pred ccccccchhHHHHHhhhccC------------CCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE------------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
..+||.+...+.+.-.+... ....+-|.++|++|+|||+||+.++..+...|
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~f 75 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 75 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeE
Confidence 45788888887775444321 11235788999999999999999998765443
No 289
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=96.15 E-value=0.0083 Score=56.95 Aligned_cols=98 Identities=20% Similarity=0.164 Sum_probs=54.8
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC----
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD---- 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---- 199 (445)
.|...|. .+-+..+++-|+|+.|+||||||..+.......-..++|++. .. .+ -...+..++...+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~----e~--~l---d~~~a~~lGvdl~rllv 110 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDA----EH--AL---DPEYAESLGVDLDRLLV 110 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEES----SS--------HHHHHHTT--GGGEEE
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecC----cc--cc---hhhHHHhcCccccceEE
Confidence 4555554 222335799999999999999999988776555556778762 11 11 1223333332111
Q ss_pred CCCcChhhhHHHHHHHHccC-cEEEEEcCCCCH
Q 045345 200 TSTWNVYDGLKMIGSRLRYR-KVLLIVDAAFDL 231 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~ 231 (445)
..+...++....+...++.. --++|+|-|-..
T Consensus 111 ~~P~~~E~al~~~e~lirsg~~~lVVvDSv~al 143 (322)
T PF00154_consen 111 VQPDTGEQALWIAEQLIRSGAVDLVVVDSVAAL 143 (322)
T ss_dssp EE-SSHHHHHHHHHHHHHTTSESEEEEE-CTT-
T ss_pred ecCCcHHHHHHHHHHHhhcccccEEEEecCccc
Confidence 12234455566666666544 358889987543
No 290
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.14 E-value=0.017 Score=52.49 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|.|++|+||||+|+.+++.+
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999998865
No 291
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=96.13 E-value=0.21 Score=45.77 Aligned_cols=197 Identities=16% Similarity=0.161 Sum_probs=103.2
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC------ccccceeeehhhh------hhcc-
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH------EFEASSFLANVRE------ISEK- 180 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~f~~~~~~~~~~~------~~~~- 180 (445)
..+.++++.-..+.++.. .++.+-..++|++|.||-|.+..+.+++-. +-+..-|...... ++..
T Consensus 13 ~~l~~~~e~~~~Lksl~~--~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~y 90 (351)
T KOG2035|consen 13 DELIYHEELANLLKSLSS--TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNY 90 (351)
T ss_pred hhcccHHHHHHHHHHhcc--cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccc
Confidence 447777777777777665 345778889999999999999888876422 1222333321111 0000
Q ss_pred ----------CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcE-EEEEcCCCCHH--H---HHHhcCCCCCc
Q 045345 181 ----------GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKV-LLIVDAAFDLK--Q---LESLAGKHEWF 244 (445)
Q Consensus 181 ----------~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~~~--~---l~~l~~~~~~~ 244 (445)
..-..+..+++.++......+. -..+++ ++|+-.+++.. . ++.-......
T Consensus 91 HlEitPSDaG~~DRvViQellKevAQt~qie~-------------~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~- 156 (351)
T KOG2035|consen 91 HLEITPSDAGNYDRVVIQELLKEVAQTQQIET-------------QGQRPFKVVVINEADELTRDAQHALRRTMEKYSS- 156 (351)
T ss_pred eEEeChhhcCcccHHHHHHHHHHHHhhcchhh-------------ccccceEEEEEechHhhhHHHHHHHHHHHHHHhc-
Confidence 0001122333333321111000 011233 56666665431 1 1111111111
Q ss_pred CcccccccC-----------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhC-
Q 045345 245 DEHLLMTHG-----------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLY- 312 (445)
Q Consensus 245 ~~~vl~t~~-----------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~- 312 (445)
+.+++.... ..-.++++..+++|....+++.+-+.+...+ .+++.+|+++++|+-.-.-.+-...+
T Consensus 157 ~~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~ 234 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRV 234 (351)
T ss_pred CceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 222222111 1234789999999999999888744443322 57899999999998543322222221
Q ss_pred -C---------CCHHHHHHHHHHHhc
Q 045345 313 -G---------KTTKEWESAPKRLER 328 (445)
Q Consensus 313 -~---------~~~~~w~~~l~~l~~ 328 (445)
+ -+..+|+-++.++..
T Consensus 235 ~n~~~~a~~~~i~~~dWe~~i~e~a~ 260 (351)
T KOG2035|consen 235 NNEPFTANSQVIPKPDWEIYIQEIAR 260 (351)
T ss_pred ccccccccCCCCCCccHHHHHHHHHH
Confidence 1 134679888877543
No 292
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.027 Score=55.38 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++++|++|+||||++..++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998653
No 293
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=96.10 E-value=0.0069 Score=56.30 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.4
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...++.|.|++|+|||+||.+++.....+-..++|+.
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578999999999999999998775433344566665
No 294
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.09 E-value=0.0048 Score=53.90 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=22.1
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+|+|.|.+|+||||||..+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987643
No 295
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=96.08 E-value=0.12 Score=46.50 Aligned_cols=45 Identities=24% Similarity=0.340 Sum_probs=33.2
Q ss_pred cc-ccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 116 LV-GMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 116 ~v-Gr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.| |.+.++++|.+.+... -.+.+=+.++|++|.|||-||+++++.
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh 204 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH 204 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh
Confidence 45 4677788887765421 123556789999999999999999863
No 296
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.05 E-value=0.007 Score=53.84 Aligned_cols=36 Identities=19% Similarity=0.203 Sum_probs=27.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
...+|+|+|++|+||||||+.+...+...-...+++
T Consensus 23 ~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l 58 (198)
T PRK03846 23 KGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL 58 (198)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 456999999999999999999998764432334444
No 297
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.04 E-value=0.0048 Score=51.30 Aligned_cols=26 Identities=27% Similarity=0.478 Sum_probs=21.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+++|+|++|+|||||++.+...+...
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence 36899999999999999998865443
No 298
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=96.04 E-value=0.006 Score=52.60 Aligned_cols=45 Identities=27% Similarity=0.306 Sum_probs=32.6
Q ss_pred ccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 116 LVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 116 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+||.+..+.++.+.+..-.....-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHh
Confidence 478888888888877652222245669999999999999999884
No 299
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.04 E-value=0.0053 Score=53.59 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+++|.|++|+|||||++.++..+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3789999999999999999987653
No 300
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.03 E-value=0.0042 Score=55.23 Aligned_cols=23 Identities=43% Similarity=0.650 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|++|+||||||+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 301
>PRK06217 hypothetical protein; Validated
Probab=96.03 E-value=0.0053 Score=53.85 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|.|++|.||||||+++...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999875
No 302
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.01 E-value=0.015 Score=61.61 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=56.5
Q ss_pred HHHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCC----
Q 045345 124 NTLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLP---- 198 (445)
Q Consensus 124 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~---- 198 (445)
..|..+|. .+-...+++-|+|++|+||||||..++......-..++|++. ...... ..+..++...
T Consensus 46 ~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~----E~t~~~-----~~A~~lGvDl~~ll 116 (790)
T PRK09519 46 IALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDA----EHALDP-----DYAKKLGVDTDSLL 116 (790)
T ss_pred HHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECC----ccchhH-----HHHHHcCCChhHeE
Confidence 45555665 344456799999999999999998877654333455677762 111111 2333333211
Q ss_pred CCCCcChhhhHHHHHHHHc-cCcEEEEEcCCC
Q 045345 199 DTSTWNVYDGLKMIGSRLR-YRKVLLIVDAAF 229 (445)
Q Consensus 199 ~~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 229 (445)
.....+.+.....+...++ ++.-|||+|-+.
T Consensus 117 v~~~~~~E~~l~~i~~lv~~~~~~LVVIDSI~ 148 (790)
T PRK09519 117 VSQPDTGEQALEIADMLIRSGALDIVVIDSVA 148 (790)
T ss_pred EecCCCHHHHHHHHHHHhhcCCCeEEEEcchh
Confidence 1122334445555555554 467799999874
No 303
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=96.01 E-value=0.0051 Score=51.56 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|.|.|++|+||||+|+.+...+
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999865
No 304
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=96.01 E-value=0.047 Score=55.80 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|+.|+|||||.+.+...
T Consensus 348 g~riaiiG~NG~GKSTLlk~l~g~ 371 (530)
T COG0488 348 GDRIAIVGPNGAGKSTLLKLLAGE 371 (530)
T ss_pred CCEEEEECCCCCCHHHHHHHHhhh
Confidence 347999999999999999999654
No 305
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=96.00 E-value=0.0047 Score=54.17 Aligned_cols=23 Identities=39% Similarity=0.699 Sum_probs=21.1
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|.+|+||||||+.++..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999875
No 306
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.00 E-value=0.0056 Score=53.73 Aligned_cols=26 Identities=38% Similarity=0.442 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|-||=|+||||||+.+++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 35899999999999999999998765
No 307
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.98 E-value=0.0087 Score=55.74 Aligned_cols=44 Identities=20% Similarity=0.172 Sum_probs=35.1
Q ss_pred hhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 129 LMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 129 ~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+|..+-...+++.|+|.+|+|||++|.++..........++|+.
T Consensus 15 ~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs 58 (260)
T COG0467 15 ILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS 58 (260)
T ss_pred HhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence 33333345679999999999999999999988766677788876
No 308
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.97 E-value=0.0077 Score=52.82 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=29.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++.|+|+.|+|||||+..+.......|..++...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 368899999999999999999998888785444443
No 309
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.97 E-value=0.0054 Score=51.81 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++.|.|++|+||||+|+.+....
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 46799999999999999998763
No 310
>PRK14974 cell division protein FtsY; Provisional
Probab=95.96 E-value=0.035 Score=53.34 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+..+++++|++|+||||++..++..+...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 36799999999999999888888765443
No 311
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.96 E-value=0.057 Score=50.56 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=34.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQLLSEL 194 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~il~~l 194 (445)
..++.|.|.+|+|||+++.+++.....+ -..++|+. . ......+...+...+
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS----~--E~~~~~~~~r~~~~~ 82 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS----L--EEPVVRTARRLLGQY 82 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE----c--ccCHHHHHHHHHHHH
Confidence 4588899999999999999998775443 34566665 2 123444555555443
No 312
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=95.96 E-value=0.04 Score=48.57 Aligned_cols=25 Identities=36% Similarity=0.331 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++.|.|++|+|||+++..++..+.
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3888999999999999999987653
No 313
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.088 Score=48.67 Aligned_cols=93 Identities=19% Similarity=0.238 Sum_probs=56.4
Q ss_pred ccccccchhHHHHHhhhc----------cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCH
Q 045345 114 KDLVGMDSCWNTLRFLMD----------KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGL 183 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (445)
.+.-|.+...+.|.+..- .....-+-|.++|++|.|||-||++|+-..-..| +. ++.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTF-----FS----vSS---- 199 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTF-----FS----VSS---- 199 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCce-----EE----eeh----
Confidence 567788888888876432 1112256788999999999999999997643322 22 111
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH-ccCcEEEEEcCCCC
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL-RYRKVLLIVDAAFD 230 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~ 230 (445)
. .+.+.-.+ ..+.++..+.+.. .+++-+|.+|.++.
T Consensus 200 S----DLvSKWmG-------ESEkLVknLFemARe~kPSIIFiDEiDs 236 (439)
T KOG0739|consen 200 S----DLVSKWMG-------ESEKLVKNLFEMARENKPSIIFIDEIDS 236 (439)
T ss_pred H----HHHHHHhc-------cHHHHHHHHHHHHHhcCCcEEEeehhhh
Confidence 1 12222111 1223344444433 46899999999863
No 314
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.95 E-value=0.016 Score=48.59 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++|.|+.|.|||||++.++..... ..+.+++.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 60 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWG 60 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEEC
Confidence 358999999999999999999875432 34445543
No 315
>PRK14528 adenylate kinase; Provisional
Probab=95.93 E-value=0.059 Score=47.37 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.|.|.|++|+||||+|+.++..+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999998765
No 316
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=95.93 E-value=0.0095 Score=61.27 Aligned_cols=48 Identities=25% Similarity=0.417 Sum_probs=38.1
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....+++|.+..++.+...+... ...-+.|+|++|+|||++|+.+++.
T Consensus 62 ~~f~~iiGqs~~i~~l~~al~~~--~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 62 KSFDEIIGQEEGIKALKAALCGP--NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CCHHHeeCcHHHHHHHHHHHhCC--CCceEEEECCCCCCHHHHHHHHHHH
Confidence 34467999999999998776533 2345679999999999999999764
No 317
>PRK13949 shikimate kinase; Provisional
Probab=95.93 E-value=0.0069 Score=52.37 Aligned_cols=24 Identities=33% Similarity=0.355 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|+|++|.||||+++.++..+.
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999998764
No 318
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=95.92 E-value=0.0097 Score=58.25 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=38.0
Q ss_pred ccccccchhHHHHHhhhcc---------C---CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 114 KDLVGMDSCWNTLRFLMDK---------E---PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~---------~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..++|.+...+.+...+.. + ......+.++|++|+|||+||+.++..+...
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~ 77 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAP 77 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCCh
Confidence 4588999888888766632 0 0113578899999999999999999876443
No 319
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=95.92 E-value=0.0057 Score=51.87 Aligned_cols=20 Identities=40% Similarity=0.775 Sum_probs=18.6
Q ss_pred EEEEEccCCCchhHHHHHHH
Q 045345 139 MIGICGMGGIGKTTLARVVY 158 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~ 158 (445)
.|+|+|.||+||||++..+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58899999999999999987
No 320
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.91 E-value=0.0034 Score=52.32 Aligned_cols=45 Identities=29% Similarity=0.352 Sum_probs=32.1
Q ss_pred cccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 117 VGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
||....++.+.+.+..-......|.|+|.+|+||+++|+.++..-
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~ 45 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYS 45 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTT
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhc
Confidence 577788888877766422233467899999999999999888753
No 321
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.88 E-value=0.0069 Score=51.28 Aligned_cols=22 Identities=41% Similarity=0.546 Sum_probs=20.2
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|.|+|++|.||||+|+.++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998865
No 322
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.88 E-value=0.0088 Score=50.88 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=28.7
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
...+|-++|++|.||||||.++...+....-.+..+
T Consensus 22 ~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~L 57 (197)
T COG0529 22 KGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLL 57 (197)
T ss_pred CCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 456899999999999999999999876654444443
No 323
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.84 E-value=0.0067 Score=52.32 Aligned_cols=23 Identities=43% Similarity=0.491 Sum_probs=19.8
Q ss_pred EEEEccCCCchhHHHHHHHhhcc
Q 045345 140 IGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
|.|+|.+|+|||||++.+++.++
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~ 24 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELK 24 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhh
Confidence 67999999999999999998764
No 324
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.83 E-value=0.054 Score=48.62 Aligned_cols=22 Identities=27% Similarity=0.312 Sum_probs=19.8
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~ 23 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKY 23 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6799999999999999998754
No 325
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.83 E-value=0.013 Score=53.39 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=33.0
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.|.++|..+-....++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 444555433334579999999999999999988765333344566765
No 326
>PRK13948 shikimate kinase; Provisional
Probab=95.83 E-value=0.0078 Score=52.60 Aligned_cols=28 Identities=18% Similarity=0.265 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+.|.++|+.|+||||+++.++..+..
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~ 36 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALML 36 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3468889999999999999999987643
No 327
>PRK05439 pantothenate kinase; Provisional
Probab=95.81 E-value=0.011 Score=56.04 Aligned_cols=29 Identities=38% Similarity=0.445 Sum_probs=24.6
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...-+|+|.|.+|+||||+|+.+...+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 44679999999999999999998876543
No 328
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.78 E-value=0.0096 Score=60.64 Aligned_cols=50 Identities=20% Similarity=0.249 Sum_probs=39.1
Q ss_pred ccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+++--..-++++..||.. +....+++.++|++|+||||.++.+++.+
T Consensus 17 ~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el 69 (519)
T PF03215_consen 17 TLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL 69 (519)
T ss_pred CHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh
Confidence 344566666778888888875 33346799999999999999999999875
No 329
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.77 E-value=0.012 Score=60.79 Aligned_cols=50 Identities=16% Similarity=0.143 Sum_probs=38.0
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+..+.|.+..+.|.++.........+|.|+|++|+||||+|+.++..+..
T Consensus 369 P~~f~rpeV~~iL~~~~~~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 369 PEWFSFPEVVAELRRTYPPRHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred ChhhcHHHHHHHHHHHhccccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 34566666666667666655555668999999999999999999988754
No 330
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.034 Score=50.39 Aligned_cols=54 Identities=24% Similarity=0.259 Sum_probs=37.4
Q ss_pred cccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeeh
Q 045345 115 DLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLAN 173 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~ 173 (445)
+.=|-.++++.|.+.... +-+..+-|.++|++|.|||-+|++++++. ..||+..
T Consensus 178 dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt-----dacfirv 242 (435)
T KOG0729|consen 178 DVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT-----DACFIRV 242 (435)
T ss_pred cccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc-----CceEEee
Confidence 455667777777664331 11335568899999999999999999865 3455553
No 331
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.76 E-value=0.012 Score=54.49 Aligned_cols=41 Identities=24% Similarity=0.273 Sum_probs=30.8
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.+|...+....++..+|||+|.||+|||||.-.+...+..+
T Consensus 38 ~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l~~~ 78 (323)
T COG1703 38 RELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGRELRER 78 (323)
T ss_pred HHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHHHHC
Confidence 34444444445567899999999999999999988876444
No 332
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=95.76 E-value=0.12 Score=49.23 Aligned_cols=48 Identities=21% Similarity=0.049 Sum_probs=33.8
Q ss_pred eEEcCCCCHHHHHHHHHHhhcCCCCCc-hHHHHHHHHHHHHhCCChHHH
Q 045345 257 VHKLKVLHDDEALQLFCKQAFKTNQPW-KEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 257 ~~~l~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~~~~~i~~~~~GlPLal 304 (445)
.++|++++.+|+..++....-.+-... ...+...+++.-..+|+|.-+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 679999999999999987763332221 233455666777779999654
No 333
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=95.76 E-value=0.02 Score=59.84 Aligned_cols=59 Identities=20% Similarity=0.398 Sum_probs=44.5
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeeh
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLAN 173 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~ 173 (445)
...+.++|.+..++.+...+..+ +.+.++|++|+|||++|+.+++.+... |...+++.+
T Consensus 15 ~~~~~viG~~~a~~~l~~a~~~~----~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n 74 (608)
T TIGR00764 15 RLIDQVIGQEEAVEIIKKAAKQK----RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPN 74 (608)
T ss_pred hhHhhccCHHHHHHHHHHHHHcC----CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeC
Confidence 34567899999998888877743 255699999999999999999887554 344455543
No 334
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.75 E-value=0.014 Score=53.02 Aligned_cols=37 Identities=22% Similarity=0.183 Sum_probs=24.9
Q ss_pred hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 121 SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 121 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+.+...+... .+..|+|++|.|||+++..+...+
T Consensus 5 ~Q~~Ai~~~~~~~----~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 5 SQREAIQSALSSN----GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp HHHHHHHHHCTSS----E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCC----CCEEEECCCCCChHHHHHHHHHHh
Confidence 3456666666522 278899999999998777776655
No 335
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.042 Score=58.80 Aligned_cols=103 Identities=17% Similarity=0.199 Sum_probs=64.5
Q ss_pred ccccccchhHHHHHhhhccC---CC---CeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDKE---PY---GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~---~~---~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
...+|-+..+..|...+... .. ..-.+.+.|+.|+|||.||++++..+.+..+..+-++ .+. ..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----mse------~~ 631 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----MSE------FQ 631 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEec----hhh------hh
Confidence 45788888888887776531 11 2456778999999999999999998866665555554 222 11
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcE-EEEEcCCCC
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKV-LLIVDAAFD 230 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~-LlVlDdv~~ 230 (445)
+ .+.+.+.++.-. -......+.+.++.+|+ +|+||||+.
T Consensus 632 e--vskligsp~gyv--G~e~gg~LteavrrrP~sVVLfdeIEk 671 (898)
T KOG1051|consen 632 E--VSKLIGSPPGYV--GKEEGGQLTEAVKRRPYSVVLFEEIEK 671 (898)
T ss_pred h--hhhccCCCcccc--cchhHHHHHHHHhcCCceEEEEechhh
Confidence 1 223322222111 11223457777888886 666899983
No 336
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=95.74 E-value=0.012 Score=54.72 Aligned_cols=24 Identities=38% Similarity=0.379 Sum_probs=20.9
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|.|++|+|||+||+.++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 566999999999999999998553
No 337
>PRK14530 adenylate kinase; Provisional
Probab=95.74 E-value=0.0084 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.|.|.|++|+||||+|+.++..+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 368899999999999999998865
No 338
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.74 E-value=0.048 Score=52.22 Aligned_cols=73 Identities=21% Similarity=0.287 Sum_probs=47.0
Q ss_pred hhhhHhhhhhcccCCCCCCCCCccccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHH
Q 045345 88 ESEFIVDIVKDILEMPSKIPAKSEIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVV 157 (445)
Q Consensus 88 e~~~i~~iv~~v~~~p~~~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~ 157 (445)
+..+++..-.+|... +|...=+++.|..+..+-|++..-. ....=+-|.++|++|.|||-||++|
T Consensus 191 d~~Lve~lerdIl~~-----np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAv 265 (491)
T KOG0738|consen 191 DADLVEALERDILQR-----NPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAV 265 (491)
T ss_pred hHHHHHHHHHHHhcc-----CCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHH
Confidence 555555555566554 2223345678888877777664321 1111346789999999999999999
Q ss_pred HhhccCcc
Q 045345 158 YDLSSHEF 165 (445)
Q Consensus 158 ~~~~~~~f 165 (445)
+......|
T Consensus 266 ATEc~tTF 273 (491)
T KOG0738|consen 266 ATECGTTF 273 (491)
T ss_pred HHhhcCeE
Confidence 98765443
No 339
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.74 E-value=0.007 Score=51.92 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=19.7
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|+|.|++|+||||+|+.+...+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999998875
No 340
>PRK13946 shikimate kinase; Provisional
Probab=95.73 E-value=0.0086 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+.|.+.|++|+||||+++.+++++.
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg 35 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLG 35 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998763
No 341
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.73 E-value=0.01 Score=53.17 Aligned_cols=27 Identities=22% Similarity=0.372 Sum_probs=22.9
Q ss_pred CCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 134 PYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 134 ~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....+.+.|+|++|+|||||+..+...
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345678999999999999999998754
No 342
>PTZ00494 tuzin-like protein; Provisional
Probab=95.72 E-value=0.11 Score=51.03 Aligned_cols=78 Identities=15% Similarity=0.122 Sum_probs=55.8
Q ss_pred ccccccccccchhHHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
+..+..+|.|+.+-..+.+.|.+ +....+++++.|.-|.|||+|.+....+- --..+|++ + .+.++.+.
T Consensus 367 ~a~~~~~V~R~~eE~~vRqvL~qld~aHPRIvV~TG~~GcGKSslcRsAvrkE---~~paV~VD----V---Rg~EDtLr 436 (664)
T PTZ00494 367 AAAEAFEVRREDEEALVRSVLTQMAPSHPRIVALAGGSGGGRCVPCRRAVRVE---GVALVHVD----V---GGTEDTLR 436 (664)
T ss_pred ccccccccchhhHHHHHHHHHhhccCCCCcEEEEecCCCCCchHHHHHHHHHc---CCCeEEEE----e---cCCcchHH
Confidence 45667899999999999888876 34457999999999999999998876542 22456665 2 22334455
Q ss_pred HHHHHHhCC
Q 045345 189 QLLSELLKL 197 (445)
Q Consensus 189 ~il~~l~~~ 197 (445)
.+.+.++..
T Consensus 437 sVVKALgV~ 445 (664)
T PTZ00494 437 SVVRALGVS 445 (664)
T ss_pred HHHHHhCCC
Confidence 666666643
No 343
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=95.72 E-value=0.0096 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|++|+||||+|..++.++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3589999999999999999999864
No 344
>PHA02244 ATPase-like protein
Probab=95.71 E-value=0.0093 Score=57.43 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=32.0
Q ss_pred cccccccchhHHHH----HhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 113 FKDLVGMDSCWNTL----RFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 113 ~~~~vGr~~~l~~l----~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...++|....+... ..++.. + .-|.|+|++|+|||+||++++.....
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~---~-~PVLL~GppGtGKTtLA~aLA~~lg~ 145 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA---N-IPVFLKGGAGSGKNHIAEQIAEALDL 145 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc---C-CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34577766655433 333332 2 24678999999999999999987543
No 345
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=95.69 E-value=0.21 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+.++|+.|+|||++|..++..+
T Consensus 21 ~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 21 PNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred ceEEEeECCCCCCHHHHHHHHHHHH
Confidence 4578899999999999999998864
No 346
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.68 E-value=0.0081 Score=52.43 Aligned_cols=24 Identities=33% Similarity=0.592 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++++|+|++|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 478999999999999999998854
No 347
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=95.68 E-value=0.017 Score=53.98 Aligned_cols=32 Identities=19% Similarity=0.124 Sum_probs=27.6
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
.+..++.|.|.+|.|||||...+...+.....
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~ 133 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVP 133 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCC
Confidence 45789999999999999999999998766543
No 348
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.67 E-value=0.011 Score=51.00 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++++|+|..|+|||||+..+...+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~ 32 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALCA 32 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHhh
Confidence 4579999999999999999999987654
No 349
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=95.67 E-value=0.0095 Score=49.69 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=26.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc-Cccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 172 (445)
++|.|+|..|+|||||++.+.+.+. ..+...++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 4799999999999999999999865 4454444444
No 350
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.67 E-value=0.0088 Score=52.47 Aligned_cols=33 Identities=24% Similarity=0.198 Sum_probs=25.3
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+.|.|++|+|||+||.+++......-..++|+.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 679999999999999998876443334566664
No 351
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=95.67 E-value=0.015 Score=51.41 Aligned_cols=43 Identities=30% Similarity=0.375 Sum_probs=31.9
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|-+.....+.-.... ..-+.|.|++|+|||+||+.+..-
T Consensus 3 ~dI~GQe~aKrAL~iAAaG----~h~lLl~GppGtGKTmlA~~l~~l 45 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAG----GHHLLLIGPPGTGKTMLARRLPSL 45 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHC----C--EEEES-CCCTHHHHHHHHHHC
T ss_pred hhhcCcHHHHHHHHHHHcC----CCCeEEECCCCCCHHHHHHHHHHh
Confidence 4678888887777665552 347789999999999999999863
No 352
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=95.66 E-value=0.019 Score=54.32 Aligned_cols=56 Identities=25% Similarity=0.232 Sum_probs=42.3
Q ss_pred cccccccccchhHHH---HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 111 EIFKDLVGMDSCWNT---LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
.....|||.....+. +.++...+.-..+.|.|.|++|.|||+||..+++.+...-+
T Consensus 36 ~~~dG~VGQ~~AReAaGvIv~mik~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvP 94 (450)
T COG1224 36 FIGDGLVGQEEAREAAGVIVKMIKQGKMAGRGILIVGPPGTGKTALAMGIARELGEDVP 94 (450)
T ss_pred EcCCcccchHHHHHhhhHHHHHHHhCcccccEEEEECCCCCcHHHHHHHHHHHhCCCCC
Confidence 345789997765443 45566655445789999999999999999999998876533
No 353
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.65 E-value=0.011 Score=53.01 Aligned_cols=25 Identities=44% Similarity=0.671 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|.+|+|||||++.++--.
T Consensus 33 Ge~lgivGeSGsGKSTL~r~l~Gl~ 57 (252)
T COG1124 33 GETLGIVGESGSGKSTLARLLAGLE 57 (252)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhccc
Confidence 3489999999999999999998643
No 354
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=95.64 E-value=0.014 Score=56.40 Aligned_cols=52 Identities=21% Similarity=0.184 Sum_probs=39.7
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccccee
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSF 170 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 170 (445)
.++|.+..+..+...+..+ +.+.+.|++|+|||+||+.++..+...|..+.+
T Consensus 25 ~~~g~~~~~~~~l~a~~~~----~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~ 76 (329)
T COG0714 25 VVVGDEEVIELALLALLAG----GHVLLEGPPGVGKTLLARALARALGLPFVRIQC 76 (329)
T ss_pred eeeccHHHHHHHHHHHHcC----CCEEEECCCCccHHHHHHHHHHHhCCCeEEEec
Confidence 4888888887776666532 367799999999999999999988755544433
No 355
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.61 E-value=0.01 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+++|+|++|+|||||++.++....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 3788999999999999999977543
No 356
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=95.61 E-value=0.015 Score=57.65 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=35.7
Q ss_pred ccccccchhHHHHHhhhc-------cC-C------CCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMD-------KE-P------YGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~-------~~-~------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+||.+..++.+...+. .. . .....+.++|++|+|||+||+.++..+..
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~ 134 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDV 134 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 458999998887754431 00 0 01246889999999999999999876543
No 357
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.60 E-value=0.012 Score=56.05 Aligned_cols=51 Identities=20% Similarity=0.221 Sum_probs=42.4
Q ss_pred ccccccchhHHHHHhhhccC----CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE----PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~----~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..|+|.++.++++.+.+... ...-+++.+.||.|.||||||..+.+-+...
T Consensus 61 ~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le~y 115 (358)
T PF08298_consen 61 DEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGLEEY 115 (358)
T ss_pred ccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHhheE
Confidence 57999999999999988752 2346899999999999999999988766543
No 358
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.60 E-value=0.061 Score=52.24 Aligned_cols=86 Identities=19% Similarity=0.206 Sum_probs=42.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc--CccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS 214 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~ 214 (445)
.++|.++|+.|+||||-...++.++. ..-..+.++. .....--..-|-+....+.+.+-....+..++...+..
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT----tDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~ 278 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT----TDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEA 278 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE----eccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHH
Confidence 68999999999999954444444332 3333455554 22211111122334445554443333444443333322
Q ss_pred HHccCcEEEEEcCC
Q 045345 215 RLRYRKVLLIVDAA 228 (445)
Q Consensus 215 ~l~~~~~LlVlDdv 228 (445)
+++. =+|.+|-+
T Consensus 279 -l~~~-d~ILVDTa 290 (407)
T COG1419 279 -LRDC-DVILVDTA 290 (407)
T ss_pred -hhcC-CEEEEeCC
Confidence 3333 35556654
No 359
>PLN02165 adenylate isopentenyltransferase
Probab=95.60 E-value=0.012 Score=56.05 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|+|+.|+|||+||..++..+.
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~ 68 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFP 68 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcC
Confidence 45899999999999999999988754
No 360
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.59 E-value=0.012 Score=51.12 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..|.|+|+.|.||||||+.++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcC
Confidence 4688999999999999999998653
No 361
>PF13245 AAA_19: Part of AAA domain
Probab=95.58 E-value=0.011 Score=43.44 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=17.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++.|.|++|.|||+++......
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~ 33 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAE 33 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 357888999999999655554443
No 362
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=95.57 E-value=0.016 Score=55.28 Aligned_cols=48 Identities=21% Similarity=0.213 Sum_probs=32.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
.+++.+.|-||+||||+|.+.+-........+..+. ....+++.+.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~ 49 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFD 49 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhc
Confidence 478999999999999999998776555444444443 333444444433
No 363
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=95.55 E-value=0.032 Score=51.19 Aligned_cols=24 Identities=38% Similarity=0.563 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+++|.|+.|+|||||.+.++.-
T Consensus 28 G~i~~iiGpNG~GKSTLLk~l~g~ 51 (258)
T COG1120 28 GEITGILGPNGSGKSTLLKCLAGL 51 (258)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcc
Confidence 459999999999999999999873
No 364
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.55 E-value=0.12 Score=44.23 Aligned_cols=43 Identities=23% Similarity=0.207 Sum_probs=31.2
Q ss_pred ccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 118 GMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|-+...+.|...+..+. -...+.++|+.|+||+++|..+++.+
T Consensus 1 gq~~~~~~L~~~~~~~~-l~ha~L~~G~~g~gk~~~a~~~a~~l 43 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-LPHALLFHGPSGSGKKTLALAFARAL 43 (162)
T ss_dssp S-HHHHHHHHHHHHCTC---SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCC-cceeEEEECCCCCCHHHHHHHHHHHH
Confidence 44566777777776432 24567899999999999999999864
No 365
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.071 Score=52.76 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+++++|+.|+||||++..++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3579999999999999999888765
No 366
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.024 Score=52.59 Aligned_cols=29 Identities=34% Similarity=0.385 Sum_probs=25.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
...++|||++|.|||-||+.++..+.-.|
T Consensus 166 Pkg~ll~GppGtGKTlla~~Vaa~mg~nf 194 (388)
T KOG0651|consen 166 PKGLLLYGPPGTGKTLLARAVAATMGVNF 194 (388)
T ss_pred CceeEEeCCCCCchhHHHHHHHHhcCCce
Confidence 56799999999999999999998775554
No 367
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.54 E-value=0.098 Score=53.94 Aligned_cols=93 Identities=20% Similarity=0.234 Sum_probs=52.1
Q ss_pred cccccchhHHHHHhhhccCC--------CC---eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCH
Q 045345 115 DLVGMDSCWNTLRFLMDKEP--------YG---VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGL 183 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~--------~~---~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~ 183 (445)
++-|..+..+.+.+.+.-.+ .. ..=|.++|++|+|||-||.+++....-+ |+.. .+.
T Consensus 668 digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~-----fisv-------KGP 735 (952)
T KOG0735|consen 668 DIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLR-----FISV-------KGP 735 (952)
T ss_pred ecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCee-----EEEe-------cCH
Confidence 34455555555555554222 11 2347899999999999999998754322 2321 111
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHH-HHHHccCcEEEEEcCCCCH
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMI-GSRLRYRKVLLIVDAAFDL 231 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~ 231 (445)
+++....+.. ++.+..+ .+.-.-+|++|.||..++.
T Consensus 736 -----ElL~KyIGaS-------Eq~vR~lF~rA~~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 736 -----ELLSKYIGAS-------EQNVRDLFERAQSAKPCILFFDEFDSI 772 (952)
T ss_pred -----HHHHHHhccc-------HHHHHHHHHHhhccCCeEEEecccccc
Confidence 2333333221 2223333 3333469999999998753
No 368
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=95.54 E-value=0.011 Score=48.70 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+-|.|.|.||+||||||.+++..
T Consensus 8 PNILvtGTPG~GKstl~~~lae~ 30 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEK 30 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHH
Confidence 46789999999999999999864
No 369
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.54 E-value=0.02 Score=54.85 Aligned_cols=39 Identities=23% Similarity=0.195 Sum_probs=28.6
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+.+.+........+|+|.|.+|+|||||+..+...+..
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 343333322345689999999999999999998877654
No 370
>PRK14737 gmk guanylate kinase; Provisional
Probab=95.53 E-value=0.013 Score=51.53 Aligned_cols=26 Identities=19% Similarity=0.363 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+..+|.|+|++|+|||||++.+..+.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 35789999999999999999998764
No 371
>PRK04182 cytidylate kinase; Provisional
Probab=95.53 E-value=0.012 Score=51.19 Aligned_cols=24 Identities=42% Similarity=0.569 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|+|.|++|+||||+|+.++..+.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg 25 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999998753
No 372
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.53 E-value=0.0069 Score=56.62 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+-+.++|++|+|||++++.+...+.
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 4668999999999999999887643
No 373
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.52 E-value=0.01 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|++|+||||||+.++...
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4689999999999999999998864
No 374
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=95.51 E-value=0.013 Score=53.21 Aligned_cols=32 Identities=25% Similarity=0.275 Sum_probs=26.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCcccc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEA 167 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 167 (445)
...+|.++||+|.||||..+.+...+..++..
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p 49 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP 49 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence 35678889999999999999999887776654
No 375
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.51 E-value=0.012 Score=50.32 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=23.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
+-|.++||.|.||||+.+.+++.+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 3578999999999999999998775555
No 376
>PRK13975 thymidylate kinase; Provisional
Probab=95.51 E-value=0.013 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=23.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..|+|.|+.|+||||+|+.+++.+..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47899999999999999999998754
No 377
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.50 E-value=0.022 Score=54.16 Aligned_cols=47 Identities=13% Similarity=0.016 Sum_probs=33.6
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
.++=.......+...+.. .+.|.|.|++|+|||++|+.++..+...|
T Consensus 46 ~y~f~~~~~~~vl~~l~~----~~~ilL~G~pGtGKTtla~~lA~~l~~~~ 92 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY----DRRVMVQGYHGTGKSTHIEQIAARLNWPC 92 (327)
T ss_pred CccCCHHHHHHHHHHHhc----CCcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence 444444455556666642 23688999999999999999999876544
No 378
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=95.50 E-value=0.015 Score=55.94 Aligned_cols=48 Identities=25% Similarity=0.374 Sum_probs=36.6
Q ss_pred cccccccccchhHHHHHh-hhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 111 EIFKDLVGMDSCWNTLRF-LMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~-~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.....++|.+..++.+.- .+.. +..-+.|.|.+|+||||+|+.+..-+
T Consensus 5 ~~f~~i~Gq~~~~~~l~~~~~~~---~~~~vLl~G~pG~gKT~lar~la~ll 53 (334)
T PRK13407 5 FPFSAIVGQEEMKQAMVLTAIDP---GIGGVLVFGDRGTGKSTAVRALAALL 53 (334)
T ss_pred CCHHHhCCHHHHHHHHHHHHhcc---CCCcEEEEcCCCCCHHHHHHHHHHHC
Confidence 345678999999887764 3332 22357899999999999999998754
No 379
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=95.48 E-value=0.023 Score=45.90 Aligned_cols=47 Identities=19% Similarity=0.375 Sum_probs=33.4
Q ss_pred ccccccchh----HHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 114 KDLVGMDSC----WNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 114 ~~~vGr~~~----l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..++|-.-. ++.|...+.. .+...-|+..+|.+|+|||.+++.+++.
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 346665544 4455555554 3345678899999999999999888876
No 380
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.47 E-value=0.047 Score=54.54 Aligned_cols=42 Identities=19% Similarity=0.304 Sum_probs=33.8
Q ss_pred chhHHHHHhhhc-----cCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 120 DSCWNTLRFLMD-----KEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 120 ~~~l~~l~~~L~-----~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..-+.++..||. ...-+.+++.|+|++|+||||-.+.++..+
T Consensus 88 kkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel 134 (634)
T KOG1970|consen 88 KKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL 134 (634)
T ss_pred HHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh
Confidence 345778888887 445567899999999999999998888754
No 381
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=95.47 E-value=0.12 Score=47.97 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=51.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhh--ccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCC-----------------
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL--SSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLP----------------- 198 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~----------------- 198 (445)
-+.+|+|+.|.|||+|.+.+... +..--+.++|+.--.+.-..........|+...-....
T Consensus 88 ~I~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~~P~Fv 167 (369)
T PF02456_consen 88 FIGVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTFRPKFV 167 (369)
T ss_pred eEEEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccccccce
Confidence 45678999999999999998753 44444456666422211112223333334443321111
Q ss_pred --------CCCCcChhhhHHHHHHHHccCcEEEEEcCC
Q 045345 199 --------DTSTWNVYDGLKMIGSRLRYRKVLLIVDAA 228 (445)
Q Consensus 199 --------~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv 228 (445)
....-+++.-.....+.-+..++-||+|..
T Consensus 168 ~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDEC 205 (369)
T PF02456_consen 168 EMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDEC 205 (369)
T ss_pred eecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHH
Confidence 011123333455566777889999999975
No 382
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.46 E-value=0.015 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|++|+|||||++.+..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 3588999999999999999999865
No 383
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.44 E-value=0.096 Score=51.28 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=21.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|=-.++||||.|||++..++++.+
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L 259 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYL 259 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhc
Confidence 456799999999999999999865
No 384
>PRK14527 adenylate kinase; Provisional
Probab=95.44 E-value=0.013 Score=51.77 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|++|.||||+|+.++..+
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~ 30 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQEL 30 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998765
No 385
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.43 E-value=0.042 Score=50.58 Aligned_cols=25 Identities=28% Similarity=0.501 Sum_probs=22.0
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+|+|.|.+|.||||+|+++...+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999887654
No 386
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=95.41 E-value=0.072 Score=47.08 Aligned_cols=26 Identities=38% Similarity=0.475 Sum_probs=23.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..|+|.|..|+||||+|+.+++.+..
T Consensus 4 ~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 4 MFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999987644
No 387
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=95.41 E-value=0.23 Score=49.97 Aligned_cols=71 Identities=18% Similarity=0.163 Sum_probs=42.3
Q ss_pred ccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC-ccccceeeehhhhhhccCCHHHHHHHHHHHHh
Q 045345 118 GMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH-EFEASSFLANVREISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 195 (445)
|...-+..|..++. +-....++.|.|.+|+|||++|..++..... +-..++|+. -.-+...+...++....
T Consensus 177 gi~tG~~~LD~~~~-G~~~G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~S------lEm~~~~i~~R~~~~~~ 248 (434)
T TIGR00665 177 GVPTGFTDLDKLTS-GLQPSDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFS------LEMSAEQLAMRMLSSES 248 (434)
T ss_pred cccCCchhhHhhcC-CCCCCeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEe------CcCCHHHHHHHHHHHhc
Confidence 33344444444443 2223468999999999999999999876432 222345543 23455556666665543
No 388
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.027 Score=58.34 Aligned_cols=52 Identities=25% Similarity=0.224 Sum_probs=34.3
Q ss_pred ccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
++.=|.+.-..+|.+-+.. +-....=|.++|++|.|||-||++|+-..+-.|
T Consensus 672 dDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~F 733 (953)
T KOG0736|consen 672 DDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNF 733 (953)
T ss_pred hcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeE
Confidence 3455666666666554432 111133577999999999999999998655443
No 389
>COG4240 Predicted kinase [General function prediction only]
Probab=95.38 E-value=0.061 Score=47.72 Aligned_cols=83 Identities=20% Similarity=0.183 Sum_probs=47.6
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccCcc-ccceeeehhhhhhccCCHHHHHHHHHHHH---h-CCCCCCCcChhhhH
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSHEF-EASSFLANVREISEKGGLICLQKQLLSEL---L-KLPDTSTWNVYDGL 209 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~il~~l---~-~~~~~~~~~~~~~~ 209 (445)
++.-+++|.|+-|.||||++..++..+...+ ..+..+. ...-.-...-+..++++. + ....+...+..-+.
T Consensus 48 grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lS----LDDlYlthadrl~La~q~npllq~RGlpGTHD~tlgl 123 (300)
T COG4240 48 GRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS----LDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGL 123 (300)
T ss_pred CCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEee----hhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHH
Confidence 3467999999999999999999998876555 3444433 222122222233333331 1 11123445555566
Q ss_pred HHHHHHHccCcE
Q 045345 210 KMIGSRLRYRKV 221 (445)
Q Consensus 210 ~~l~~~l~~~~~ 221 (445)
+.+....++++-
T Consensus 124 nVLnai~~g~~~ 135 (300)
T COG4240 124 NVLNAIARGGPT 135 (300)
T ss_pred HHHHHHhcCCCC
Confidence 666666666644
No 390
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.38 E-value=0.023 Score=53.25 Aligned_cols=110 Identities=22% Similarity=0.190 Sum_probs=60.8
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSE 193 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~ 193 (445)
..+.-.....+.+.++|...-...+.|.|.|..|.||||++.++...+...-..++-+.+..+..-.. . ..
T Consensus 104 e~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~-~--------~~ 174 (270)
T PF00437_consen 104 EDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPG-P--------NQ 174 (270)
T ss_dssp CCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SC-S--------SE
T ss_pred hhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecc-c--------ce
Confidence 44444444455666666533223578999999999999999999887655412223333221111000 0 00
Q ss_pred HhCCCCCCC-cChhhhHHHHHHHHccCcEEEEEcCCCCHHHHHH
Q 045345 194 LLKLPDTST-WNVYDGLKMIGSRLRYRKVLLIVDAAFDLKQLES 236 (445)
Q Consensus 194 l~~~~~~~~-~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~~l~~ 236 (445)
+ .... .+.......+...|+..+=.++++.+.+.+....
T Consensus 175 ~----~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR~~e~~~~ 214 (270)
T PF00437_consen 175 I----QIQTRRDEISYEDLLKSALRQDPDVIIIGEIRDPEAAEA 214 (270)
T ss_dssp E----EEEEETTTBSHHHHHHHHTTS--SEEEESCE-SCHHHHH
T ss_pred E----EEEeecCcccHHHHHHHHhcCCCCcccccccCCHhHHHH
Confidence 0 0000 1233445667788888888999999988776655
No 391
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.38 E-value=0.024 Score=53.81 Aligned_cols=85 Identities=21% Similarity=0.284 Sum_probs=47.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc--ccceeeehhhhhhcc-CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF--EASSFLANVREISEK-GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGS 214 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~ 214 (445)
..+.|.|.+|.||||++.++...+.... ..++-+.+..+.... .... .+. ... ........++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v--------~~~--~~~---~~~~~~~~l~~ 199 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVV--------QLR--TSD---DAISMTRLLKA 199 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEE--------EEE--ecC---CCCCHHHHHHH
Confidence 4677999999999999999998765432 223333332222110 0000 000 000 11134455667
Q ss_pred HHccCcEEEEEcCCCCHHHHH
Q 045345 215 RLRYRKVLLIVDAAFDLKQLE 235 (445)
Q Consensus 215 ~l~~~~~LlVlDdv~~~~~l~ 235 (445)
.|+..+=.||+..+.+.+.+.
T Consensus 200 aLR~~pD~iivGEiR~~ea~~ 220 (299)
T TIGR02782 200 TLRLRPDRIIVGEVRGGEALD 220 (299)
T ss_pred HhcCCCCEEEEeccCCHHHHH
Confidence 777777777788777665443
No 392
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.37 E-value=0.032 Score=48.05 Aligned_cols=25 Identities=32% Similarity=0.360 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|+.|.|||||++.++..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 27 GDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998754
No 393
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=0.031 Score=50.27 Aligned_cols=52 Identities=27% Similarity=0.316 Sum_probs=37.3
Q ss_pred ccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
.+.=|.+-..+++.+.... +-+..+-|.++|++|.|||-||+++++.....|
T Consensus 155 ~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~f 217 (408)
T KOG0727|consen 155 ADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAF 217 (408)
T ss_pred cccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchhe
Confidence 3456777777777664431 223466788999999999999999998765544
No 394
>PLN02200 adenylate kinase family protein
Probab=95.35 E-value=0.015 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.122 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|++|+||||+|+.++..+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998754
No 395
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=95.34 E-value=0.014 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|+|++|+||||+|+.+++.+.
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg 27 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG 27 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 578899999999999999998763
No 396
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.34 E-value=0.012 Score=50.51 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=17.7
Q ss_pred EEEEccCCCchhHHHHHHHhh
Q 045345 140 IGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~ 160 (445)
|+|+|.+|+|||||+..+...
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999976
No 397
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=95.33 E-value=0.016 Score=50.01 Aligned_cols=23 Identities=39% Similarity=0.577 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|++|+||||+|+.+.+.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998864
No 398
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=95.33 E-value=0.61 Score=42.43 Aligned_cols=52 Identities=23% Similarity=0.225 Sum_probs=36.8
Q ss_pred ccccccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
+++=|.+..+++|.+.+-.. -...+-|..+|++|.|||-+|++.+.+....|
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTF 233 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATF 233 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchH
Confidence 45677888888887654311 11245678999999999999999887654444
No 399
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.32 E-value=0.081 Score=54.42 Aligned_cols=50 Identities=22% Similarity=0.217 Sum_probs=36.3
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..|..+|..+-....++.|.|.+|+|||+||.+++......-..++|+.
T Consensus 259 i~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis 308 (509)
T PRK09302 259 VPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFA 308 (509)
T ss_pred cHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45566666544344568899999999999999999876544445677765
No 400
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.31 E-value=0.13 Score=54.54 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++++++|+.|+||||++..++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4799999999999999998888765
No 401
>PRK13768 GTPase; Provisional
Probab=95.30 E-value=0.017 Score=53.42 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=22.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.+++|.|+||+||||++..+...+...
T Consensus 3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~ 29 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLTKALSDWLEEQ 29 (253)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHhc
Confidence 478899999999999999888766443
No 402
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=95.30 E-value=0.016 Score=50.90 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=23.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
+.+.|+|++|+|||||+..+.......|
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 5889999999999999999988654334
No 403
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.30 E-value=0.013 Score=53.36 Aligned_cols=37 Identities=19% Similarity=0.095 Sum_probs=26.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...++.|.|++|+||||||.+++.....+-..++++.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~ 59 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS 59 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 3459999999999999999777665422223445554
No 404
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.29 E-value=0.074 Score=49.56 Aligned_cols=28 Identities=32% Similarity=0.139 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...-++|.|++|.|||||.+.++..+..
T Consensus 110 ~~~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 110 RVLNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred CeeEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 3568899999999999999999987654
No 405
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=95.29 E-value=0.014 Score=53.32 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=19.4
Q ss_pred EEccCCCchhHHHHHHHhhccCc
Q 045345 142 ICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 142 I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
|.||+|+||||+++.+.+.+...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~ 23 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESN 23 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999876554
No 406
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=95.29 E-value=0.015 Score=55.25 Aligned_cols=35 Identities=26% Similarity=0.362 Sum_probs=25.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+++.+.|-||+||||+|.+.+-.....-..++.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 57889999999999999888776544333344443
No 407
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.28 E-value=0.017 Score=45.48 Aligned_cols=22 Identities=41% Similarity=0.383 Sum_probs=19.8
Q ss_pred eEEEEEEccCCCchhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVY 158 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~ 158 (445)
...++|.|++|.|||||++.+.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 3588999999999999999976
No 408
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.28 E-value=0.03 Score=52.61 Aligned_cols=114 Identities=23% Similarity=0.180 Sum_probs=62.3
Q ss_pred ccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhh--ccCCHHHHHHH
Q 045345 114 KDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREIS--EKGGLICLQKQ 189 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~~~~l~~~ 189 (445)
..|+|-.++-..+..++.. -.+...-|.|+|+.|.|||.|......+ .+.|.....+..+.+.- +...+..+..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEsnsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rq 102 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGESNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQ 102 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCCCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHH
Confidence 4689999998888888764 1123446779999999999998766655 22333333332221111 11122223333
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHHcc------CcEEEEEcCCC
Q 045345 190 LLSELLKLPDTSTWNVYDGLKMIGSRLRY------RKVLLIVDAAF 229 (445)
Q Consensus 190 il~~l~~~~~~~~~~~~~~~~~l~~~l~~------~~~LlVlDdv~ 229 (445)
+..++... .....+..+....+...|+. .+++.|+|.++
T Consensus 103 l~~e~~~~-~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfD 147 (408)
T KOG2228|consen 103 LALELNRI-VKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFD 147 (408)
T ss_pred HHHHHhhh-heeecccchhHHHHHHHHhcCCCCCCceEEEEeehhh
Confidence 33322211 12223344444555555542 46899999876
No 409
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=95.27 E-value=0.024 Score=55.92 Aligned_cols=53 Identities=21% Similarity=0.205 Sum_probs=37.5
Q ss_pred cccccccchhHHHHHhhhc-------c---CC--C----CeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 113 FKDLVGMDSCWNTLRFLMD-------K---EP--Y----GVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~-------~---~~--~----~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
....||.+...+.+...+. . .. + ....+.|+|++|+|||+||+.++..+...|
T Consensus 76 ~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 76 DEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred cceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 3567999998888855441 1 01 1 124788999999999999999997664333
No 410
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=95.26 E-value=0.029 Score=50.33 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.|.+|+|||+|+..+.+....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~ 41 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA 41 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEEcCcccccchhhHHHHhcccc
Confidence 47889999999999999999987654
No 411
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.26 E-value=0.016 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.520 Sum_probs=19.3
Q ss_pred EEEEccCCCchhHHHHHHHhh
Q 045345 140 IGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~ 160 (445)
|.|.|.+|+|||||.+.++..
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 679999999999999999875
No 412
>PRK05973 replicative DNA helicase; Provisional
Probab=95.26 E-value=0.022 Score=51.84 Aligned_cols=36 Identities=17% Similarity=0.103 Sum_probs=27.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++.|.|.+|+|||+||.+++.....+-..++|+.
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS 99 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT 99 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 458899999999999999998876533334455554
No 413
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=95.26 E-value=0.024 Score=48.20 Aligned_cols=35 Identities=20% Similarity=0.334 Sum_probs=28.8
Q ss_pred hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 121 SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 121 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-+++|...|.. +++++.|.+|+|||||...+...
T Consensus 24 ~g~~~l~~~l~~-----k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 24 EGIEELKELLKG-----KTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTHHHHHHHHTT-----SEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCHHHHHHHhcC-----CEEEEECCCCCCHHHHHHHHHhh
Confidence 456777877762 58899999999999999998764
No 414
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=95.25 E-value=0.018 Score=54.15 Aligned_cols=28 Identities=36% Similarity=0.398 Sum_probs=23.3
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3467999999999999999988766554
No 415
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.24 E-value=0.014 Score=51.47 Aligned_cols=22 Identities=32% Similarity=0.226 Sum_probs=20.1
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|.|.|++|+||||+|+.++..+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6899999999999999998864
No 416
>PRK06761 hypothetical protein; Provisional
Probab=95.23 E-value=0.02 Score=53.50 Aligned_cols=27 Identities=37% Similarity=0.626 Sum_probs=23.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
++|.|.|++|+||||+++.+++.+...
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~ 30 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQN 30 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence 589999999999999999999987543
No 417
>PRK14532 adenylate kinase; Provisional
Probab=95.22 E-value=0.016 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.9
Q ss_pred EEEEccCCCchhHHHHHHHhhc
Q 045345 140 IGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|.|.|++|+||||+|+.++..+
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~ 24 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEER 24 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 6789999999999999998755
No 418
>CHL00206 ycf2 Ycf2; Provisional
Probab=95.22 E-value=0.076 Score=60.83 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+=|.++|++|+|||.||++++....
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 45678999999999999999998643
No 419
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=95.21 E-value=0.033 Score=53.19 Aligned_cols=92 Identities=20% Similarity=0.147 Sum_probs=51.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
...++|.|..|.|||||++++...+.... ..+.+.+..+..... .... .+...........-.....+...|
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~-~l~~~~~~~~~~~~~~~~~l~~~L 215 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYV-HLFYSKGGQGLAKVTPKDLLQSCL 215 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEE-EEEecCCCCCcCccCHHHHHHHHh
Confidence 46899999999999999999987654332 333343322221110 0000 000000000111122345566778
Q ss_pred ccCcEEEEEcCCCCHHHHHH
Q 045345 217 RYRKVLLIVDAAFDLKQLES 236 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~~~l~~ 236 (445)
+..+-.|++|.+.+.+.+..
T Consensus 216 r~~pd~ii~gE~r~~e~~~~ 235 (308)
T TIGR02788 216 RMRPDRIILGELRGDEAFDF 235 (308)
T ss_pred cCCCCeEEEeccCCHHHHHH
Confidence 88888999999987665443
No 420
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.21 E-value=0.04 Score=47.91 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|+.|.|||||++.++...
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3489999999999999999988754
No 421
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=95.20 E-value=0.018 Score=53.76 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=28.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
++|+|.|.+|+|||||+..+...++.+. .++.+.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK 35 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK 35 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence 5899999999999999999999887765 455554
No 422
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.19 E-value=0.023 Score=57.97 Aligned_cols=29 Identities=28% Similarity=0.588 Sum_probs=24.9
Q ss_pred CCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 133 EPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 133 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..++..+|+|.|++|.||||||+.+...+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglL 89 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFM 89 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhC
Confidence 34467899999999999999999998764
No 423
>PRK14531 adenylate kinase; Provisional
Probab=95.19 E-value=0.017 Score=50.68 Aligned_cols=23 Identities=26% Similarity=0.199 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|.|++|+||||+++.++..+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998865
No 424
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.18 E-value=0.08 Score=54.29 Aligned_cols=50 Identities=30% Similarity=0.372 Sum_probs=36.2
Q ss_pred ccccccccchhHHHHHhhhc---cCC-----C-C-eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 112 IFKDLVGMDSCWNTLRFLMD---KEP-----Y-G-VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~---~~~-----~-~-~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+.-|.+...+++.+.+. ... + . ++=|.++|++|.|||.||++++...
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA 207 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA 207 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc
Confidence 44678898887776666543 221 1 1 4568899999999999999998753
No 425
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=95.17 E-value=0.016 Score=49.20 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+++|+|+.|+|||||+..+...++.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~ 26 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKAR 26 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 57899999999999999999987554
No 426
>PRK14529 adenylate kinase; Provisional
Probab=95.13 E-value=0.12 Score=46.55 Aligned_cols=90 Identities=22% Similarity=0.133 Sum_probs=46.7
Q ss_pred EEEEccCCCchhHHHHHHHhhccCcc-ccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcc
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEF-EASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRY 218 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~ 218 (445)
|.|.|++|+||||+|+.++..+.-.+ ...-.+.. .+.....+....++++.. ......+-....+.+.+..
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~--~i~~~t~lg~~i~~~i~~------G~lvpdei~~~lv~~~l~~ 74 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFRE--HIGGGTELGKKAKEYIDR------GDLVPDDITIPMILETLKQ 74 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhh--hccCCChHHHHHHHHHhc------cCcchHHHHHHHHHHHHhc
Confidence 67899999999999999988753221 11111110 011112222223333221 1122223345556666643
Q ss_pred C-cEEEEEcCCC-CHHHHHHh
Q 045345 219 R-KVLLIVDAAF-DLKQLESL 237 (445)
Q Consensus 219 ~-~~LlVlDdv~-~~~~l~~l 237 (445)
. ..=+|||..- +.+|.+.+
T Consensus 75 ~~~~g~iLDGfPRt~~Qa~~l 95 (223)
T PRK14529 75 DGKNGWLLDGFPRNKVQAEKL 95 (223)
T ss_pred cCCCcEEEeCCCCCHHHHHHH
Confidence 2 3458999984 55665544
No 427
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=95.13 E-value=0.023 Score=50.97 Aligned_cols=29 Identities=28% Similarity=0.326 Sum_probs=25.4
Q ss_pred CCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 134 PYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 134 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++++|+++|..|+|||||...+.....
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999999987654
No 428
>PLN02348 phosphoribulokinase
Probab=95.13 E-value=0.039 Score=53.67 Aligned_cols=29 Identities=28% Similarity=0.425 Sum_probs=25.5
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+...+|+|.|.+|+||||||+.+.+.+..
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45689999999999999999999987753
No 429
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.12 E-value=0.015 Score=52.84 Aligned_cols=47 Identities=26% Similarity=0.150 Sum_probs=31.1
Q ss_pred HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-cccceeee
Q 045345 126 LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLA 172 (445)
Q Consensus 126 l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 172 (445)
|.++|..+-....++.|.|++|+|||+||.+++.....+ -..++|+.
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs 55 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS 55 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence 344454332335699999999999999999987654333 34566665
No 430
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.12 E-value=0.058 Score=51.90 Aligned_cols=45 Identities=16% Similarity=0.235 Sum_probs=36.2
Q ss_pred chhHHHHHhhhccCC-CCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 120 DSCWNTLRFLMDKEP-YGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 120 ~~~l~~l~~~L~~~~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+...+.|.+.+...+ ....+|+|.|.=|+|||++.+.+.+.+...
T Consensus 2 ~~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred hHHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 445667777777543 567899999999999999999999887666
No 431
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.12 E-value=0.033 Score=52.99 Aligned_cols=29 Identities=28% Similarity=0.303 Sum_probs=24.4
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
....+|+|.|++|+|||||+..+...+..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~ 60 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRR 60 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999998876433
No 432
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=95.09 E-value=0.031 Score=51.36 Aligned_cols=55 Identities=24% Similarity=0.308 Sum_probs=41.0
Q ss_pred ccccccccchhHHHHHhhhccCC-----------CCeEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEP-----------YGVRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~-----------~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
...+.=|.+..+++|.+.....- ...+=|.++|.+|.|||-||++++++.+..|-
T Consensus 183 ty~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFl 248 (440)
T KOG0726|consen 183 TYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFL 248 (440)
T ss_pred hhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhh
Confidence 33556789999999987654211 12445779999999999999999998766653
No 433
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.09 E-value=0.072 Score=53.16 Aligned_cols=93 Identities=19% Similarity=0.153 Sum_probs=50.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCC------CCCCcChhh---
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLP------DTSTWNVYD--- 207 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~------~~~~~~~~~--- 207 (445)
...++|.|.+|+|||||+..++.....+...++.+.-+. .....+..+.+.++..-.... ..+......
T Consensus 144 GQR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liG--ER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 144 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVG--ERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec--cCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 458899999999999999998876554433333332221 122334444444443211000 011111111
Q ss_pred --hHHHHHHHH---ccCcEEEEEcCCCCH
Q 045345 208 --GLKMIGSRL---RYRKVLLIVDAAFDL 231 (445)
Q Consensus 208 --~~~~l~~~l---~~~~~LlVlDdv~~~ 231 (445)
..-.+.+++ +++.+||++|++...
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 250 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRF 250 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHH
Confidence 112234444 679999999998644
No 434
>PRK13764 ATPase; Provisional
Probab=95.07 E-value=0.05 Score=56.21 Aligned_cols=85 Identities=15% Similarity=0.144 Sum_probs=48.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR 217 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 217 (445)
..|.|.|++|+||||++.++++.+..+-..+..+.+..+......+ .+.. ....+... .....|+
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i--------~q~~----~~~~~~~~---~~~~lLR 322 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEI--------TQYS----KLEGSMEE---TADILLL 322 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcc--------eEEe----eccccHHH---HHHHHHh
Confidence 4588999999999999999998765432222344433222111100 0000 00111111 2223367
Q ss_pred cCcEEEEEcCCCCHHHHHHh
Q 045345 218 YRKVLLIVDAAFDLKQLESL 237 (445)
Q Consensus 218 ~~~~LlVlDdv~~~~~l~~l 237 (445)
.+|=.+++|.+.+.+.++.+
T Consensus 323 ~rPD~IivGEiRd~Et~~~~ 342 (602)
T PRK13764 323 VRPDYTIYDEMRKTEDFKIF 342 (602)
T ss_pred hCCCEEEECCCCCHHHHHHH
Confidence 78889999999988877653
No 435
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.07 E-value=0.091 Score=52.91 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++++|+.|+||||++..++..+
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHH
Confidence 4799999999999999999998765
No 436
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=95.06 E-value=0.02 Score=49.86 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+++|.|++|.|||||++.++..+.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4789999999999999999998654
No 437
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=95.05 E-value=0.029 Score=58.06 Aligned_cols=51 Identities=16% Similarity=0.143 Sum_probs=40.3
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.....++|.+..++++.+.+..-......|.|+|.+|+|||++|+.+++..
T Consensus 193 ~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s 243 (534)
T TIGR01817 193 GKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLS 243 (534)
T ss_pred CccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhC
Confidence 345689999999999988776532233466799999999999999998753
No 438
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=95.05 E-value=0.019 Score=54.61 Aligned_cols=24 Identities=33% Similarity=0.422 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|.+.|++|+||||+|+.+..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 578899999999999999998765
No 439
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=95.04 E-value=0.031 Score=50.75 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=32.5
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.|.+.|..+-....++.|.|.+|+|||++|.+++.....+-..++|+.
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s 51 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYIS 51 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 344445433334578999999999999999999876433334455654
No 440
>PRK12678 transcription termination factor Rho; Provisional
Probab=95.04 E-value=0.046 Score=55.45 Aligned_cols=29 Identities=17% Similarity=0.013 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
....+|+|++|+|||||+..+++.+...+
T Consensus 416 GQR~LIvgpp~aGKTtLL~~IAn~i~~n~ 444 (672)
T PRK12678 416 GQRGLIVSPPKAGKTTILQNIANAITTNN 444 (672)
T ss_pred CCEeEEeCCCCCCHHHHHHHHHHHHhhcC
Confidence 45778999999999999999998765433
No 441
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=95.03 E-value=0.052 Score=53.95 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++|+|.+|+|||||+..+....
T Consensus 165 Gqri~I~G~SGsGKTTLL~~Ia~l~ 189 (450)
T PRK06002 165 GQRIGIFAGSGVGKSTLLAMLARAD 189 (450)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999998887643
No 442
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.01 E-value=0.038 Score=48.78 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=22.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+|+|.|+.|+||||+++.+++.+..
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999987643
No 443
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.01 E-value=0.13 Score=44.38 Aligned_cols=80 Identities=14% Similarity=0.136 Sum_probs=42.8
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHcc-
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRY- 218 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~- 218 (445)
+.|.|.+|+|||++|.+++... ....+++. .....+. ...+.+.+... ..+ ......+....+.+.+..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~---~~~~~y~a----t~~~~d~-em~~rI~~H~~-~R~-~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAEL---GGPVTYIA----TAEAFDD-EMAERIARHRK-RRP-AHWRTIETPRDLVSALKEL 71 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhc---CCCeEEEE----ccCcCCH-HHHHHHHHHHH-hCC-CCceEeecHHHHHHHHHhc
Confidence 6799999999999999998652 23455654 2222222 23344333222 122 222222333344444432
Q ss_pred -CcEEEEEcCCC
Q 045345 219 -RKVLLIVDAAF 229 (445)
Q Consensus 219 -~~~LlVlDdv~ 229 (445)
+.-.+++|.+.
T Consensus 72 ~~~~~VLIDclt 83 (169)
T cd00544 72 DPGDVVLIDCLT 83 (169)
T ss_pred CCCCEEEEEcHh
Confidence 34479999863
No 444
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.01 E-value=0.02 Score=43.87 Aligned_cols=25 Identities=40% Similarity=0.567 Sum_probs=21.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
++.+.|.+|+||||++..++..++.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3678999999999999999987654
No 445
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=95.00 E-value=0.019 Score=55.31 Aligned_cols=47 Identities=19% Similarity=0.172 Sum_probs=37.3
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..++|.+..+..+.+.+..-.....-|.|+|.+|+||+++|+.+...
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHh
Confidence 46899999999998877653233346779999999999999998753
No 446
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=94.98 E-value=0.071 Score=52.00 Aligned_cols=35 Identities=34% Similarity=0.321 Sum_probs=28.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc--cCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS--SHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~--~~~f~~~~~~~ 172 (445)
.++.|.|.+|.|||.||..++.++ ........++.
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~ 38 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLC 38 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEE
Confidence 478999999999999999999988 55555556554
No 447
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=94.96 E-value=0.029 Score=54.09 Aligned_cols=47 Identities=28% Similarity=0.304 Sum_probs=37.1
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....+||-+.....|...+.. .+..-|.|.|..|+||||+|+.+++-
T Consensus 15 pf~~ivGq~~~k~al~~~~~~--p~~~~vli~G~~GtGKs~~ar~~~~~ 61 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVID--PKIGGVMIMGDRGTGKSTTIRALVDL 61 (350)
T ss_pred CHHHHhChHHHHHHHHHhccC--CCCCeEEEEcCCCCCHHHHHHHHHHH
Confidence 456799999888888766653 33445669999999999999999764
No 448
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=94.95 E-value=0.023 Score=49.24 Aligned_cols=36 Identities=25% Similarity=0.352 Sum_probs=30.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...|++-|++|+|||+|..+.+..++++|...+.-.
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~ 48 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG 48 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence 479999999999999999999999988887555443
No 449
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=94.95 E-value=0.022 Score=50.53 Aligned_cols=22 Identities=36% Similarity=0.647 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+|+|+|+.|+||||.|+.+.+
T Consensus 3 ~iIglTG~igsGKStva~~~~~ 24 (201)
T COG0237 3 LIIGLTGGIGSGKSTVAKILAE 24 (201)
T ss_pred eEEEEecCCCCCHHHHHHHHHH
Confidence 5899999999999999998876
No 450
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=94.94 E-value=0.024 Score=47.74 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|.+|+||||+.+.+...+
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l 28 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL 28 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH
Confidence 5789999999999999998887765
No 451
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.94 E-value=0.032 Score=49.83 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.|+|+|-||+||||+|..++.++..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~ 27 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSK 27 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhc
Confidence 58999999999999999866664433
No 452
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=94.92 E-value=0.14 Score=44.22 Aligned_cols=23 Identities=26% Similarity=0.286 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++.|.|.+|+|||++|..++...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~ 25 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS 25 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc
Confidence 68899999999999999998764
No 453
>PRK05922 type III secretion system ATPase; Validated
Probab=94.91 E-value=0.056 Score=53.55 Aligned_cols=25 Identities=28% Similarity=0.343 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++|.|..|+|||||.+.++...
T Consensus 157 GqrigI~G~nG~GKSTLL~~Ia~~~ 181 (434)
T PRK05922 157 GQRIGVFSEPGSGKSSLLSTIAKGS 181 (434)
T ss_pred CcEEEEECCCCCChHHHHHHHhccC
Confidence 3478999999999999999988754
No 454
>PRK01184 hypothetical protein; Provisional
Probab=94.91 E-value=0.021 Score=50.03 Aligned_cols=21 Identities=33% Similarity=0.762 Sum_probs=17.9
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+|+|+|++|+||||+|+ ++.
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~ 22 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAR 22 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHH
Confidence 478999999999999987 444
No 455
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=94.91 E-value=0.066 Score=45.45 Aligned_cols=33 Identities=21% Similarity=0.009 Sum_probs=23.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcccccee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSF 170 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~ 170 (445)
..|-|++..|.||||+|...+-+...+-..+.+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~ 35 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGV 35 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 467788888999999999888764433333444
No 456
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.90 E-value=0.11 Score=46.20 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|.|+.|.|||||++.++....
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 33 GEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CcEEEEECCCCCCHHHHHHHhcccCC
Confidence 35999999999999999999887654
No 457
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=94.90 E-value=0.074 Score=48.97 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=41.4
Q ss_pred cccccccccchhHHH---HHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc
Q 045345 111 EIFKDLVGMDSCWNT---LRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA 167 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~---l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~ 167 (445)
.....|||.+...+. +.+++....-..+.+.|.|++|.|||.||.++.+.+...-+.
T Consensus 35 ~~~~g~vGQ~~AReAagiivdlik~KkmaGravLlaGppgtGKTAlAlaisqELG~kvPF 94 (456)
T KOG1942|consen 35 EVAAGFVGQENAREAAGIIVDLIKSKKMAGRAVLLAGPPGTGKTALALAISQELGPKVPF 94 (456)
T ss_pred ecccccccchhhhhhhhHHHHHHHhhhccCcEEEEecCCCCchhHHHHHHHHHhCCCCCc
Confidence 345789997765442 344554433346789999999999999999999988765443
No 458
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.90 E-value=0.051 Score=54.34 Aligned_cols=93 Identities=23% Similarity=0.147 Sum_probs=49.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCC------CCCCcChhh---
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLP------DTSTWNVYD--- 207 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~------~~~~~~~~~--- 207 (445)
...++|.|.+|+|||+|+..++.....+...++.+.-+.+ ....+..+.+.+...-.... ..+......
T Consensus 143 GQR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGE--R~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a 220 (461)
T PRK12597 143 GGKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGE--RSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCc--chHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHH
Confidence 4588999999999999999988876543333332222211 12334444444433211000 011111111
Q ss_pred --hHHHHHHHH---ccCcEEEEEcCCCCH
Q 045345 208 --GLKMIGSRL---RYRKVLLIVDAAFDL 231 (445)
Q Consensus 208 --~~~~l~~~l---~~~~~LlVlDdv~~~ 231 (445)
..-.+.+++ .++.+||++|++...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLl~~DslTR~ 249 (461)
T PRK12597 221 VLTGLTIAEYLRDEEKEDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCceEEEeccchHH
Confidence 112233444 378999999999543
No 459
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=94.86 E-value=0.059 Score=57.11 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|..|+|||||++-+..-
T Consensus 499 Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 499 GEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999998653
No 460
>PRK09165 replicative DNA helicase; Provisional
Probab=94.86 E-value=0.42 Score=48.84 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=29.6
Q ss_pred ccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 118 GMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
|...-+..|..++. +-....++.|-|.+|+|||++|..++....
T Consensus 199 gi~TG~~~LD~~~g-G~~~g~livIaarpg~GKT~~al~ia~~~a 242 (497)
T PRK09165 199 GISTGLRDLDSKLG-GLHPSDLIILAGRPSMGKTALATNIAFNAA 242 (497)
T ss_pred cccCChHHHhhhcC-CCCCCceEEEEeCCCCChHHHHHHHHHHHH
Confidence 33344445555443 222346889999999999999988876653
No 461
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=94.86 E-value=0.088 Score=52.22 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++|.|..|.|||||+..++....
T Consensus 156 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 181 (432)
T PRK06793 156 GQKIGIFAGSGVGKSTLLGMIAKNAK 181 (432)
T ss_pred CcEEEEECCCCCChHHHHHHHhccCC
Confidence 45789999999999999999887654
No 462
>PRK12338 hypothetical protein; Provisional
Probab=94.86 E-value=0.025 Score=53.63 Aligned_cols=25 Identities=32% Similarity=0.310 Sum_probs=22.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|.+|+||||+|..++.++
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l 28 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTL 28 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHC
Confidence 4689999999999999999999875
No 463
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=94.85 E-value=0.019 Score=50.12 Aligned_cols=21 Identities=38% Similarity=0.694 Sum_probs=19.4
Q ss_pred EEEEEccCCCchhHHHHHHHh
Q 045345 139 MIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~ 159 (445)
+|+|+|++|+||||+++.+.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~ 21 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE 21 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999876
No 464
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=94.85 E-value=0.025 Score=48.03 Aligned_cols=35 Identities=23% Similarity=0.267 Sum_probs=28.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.++++|+|+.|+|||||...+...++.+.-.+.-+
T Consensus 2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i 36 (161)
T COG1763 2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV 36 (161)
T ss_pred CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence 36899999999999999999999877664444444
No 465
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.85 E-value=0.19 Score=50.37 Aligned_cols=72 Identities=22% Similarity=0.166 Sum_probs=43.7
Q ss_pred cccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc-CccccceeeehhhhhhccCCHHHHHHHHHHHHh
Q 045345 117 VGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLANVREISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 195 (445)
.|...-+..|.+++. +-....++.|.|.+|+|||++|..++.... .+-..++|+. -.-+...+...++....
T Consensus 175 ~gi~tG~~~LD~~~~-G~~~g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fS------lEm~~~~l~~Rl~~~~~ 247 (421)
T TIGR03600 175 TGLSTGLPKLDRLTN-GLVKGDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFS------LEMSAEQLGERLLASKS 247 (421)
T ss_pred cceeCCChhHHHHhc-CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEE------CCCCHHHHHHHHHHHHc
Confidence 344444445555443 222345889999999999999999986643 2223345543 23455666666666544
No 466
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.82 E-value=0.024 Score=51.15 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|.|.|++|+||||+|+.++..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 467
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.81 E-value=0.03 Score=47.73 Aligned_cols=27 Identities=37% Similarity=0.528 Sum_probs=23.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
++++|+|..|+|||||+..+...+...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~ 28 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSAR 28 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 589999999999999999999876544
No 468
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.79 E-value=0.023 Score=46.99 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|+|..|+|||||.+.++...
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 489999999999999999988754
No 469
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.78 E-value=0.024 Score=50.06 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=25.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++|.|++|.|||||.+.+-. +..--.+.+++.
T Consensus 28 Gevv~iiGpSGSGKSTlLRclN~-LE~~~~G~I~i~ 62 (240)
T COG1126 28 GEVVVIIGPSGSGKSTLLRCLNG-LEEPDSGSITVD 62 (240)
T ss_pred CCEEEEECCCCCCHHHHHHHHHC-CcCCCCceEEEC
Confidence 35899999999999999988743 323233556654
No 470
>PRK05595 replicative DNA helicase; Provisional
Probab=94.78 E-value=0.2 Score=50.46 Aligned_cols=72 Identities=21% Similarity=0.142 Sum_probs=43.0
Q ss_pred cccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc-CccccceeeehhhhhhccCCHHHHHHHHHHHHh
Q 045345 117 VGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLANVREISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 195 (445)
.|...-+..|..++. +-....++.|-|.+|+|||++|..++.... .+-..++|+. -.-+...+...++....
T Consensus 182 ~gi~tg~~~ld~~~~-G~~~g~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fS------lEms~~~l~~R~~a~~~ 254 (444)
T PRK05595 182 TGVASGFRELDAKTS-GFQKGDMILIAARPSMGKTTFALNIAEYAALREGKSVAIFS------LEMSKEQLAYKLLCSEA 254 (444)
T ss_pred CcccCChHHHHHhcC-CCCCCcEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEe------cCCCHHHHHHHHHHHhc
Confidence 344444555555443 222345888999999999999999987542 2222344443 23355556666665544
No 471
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.77 E-value=0.2 Score=45.97 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=20.0
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+..|+|+||+|||+||..++-.+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 55789999999999999998754
No 472
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=94.74 E-value=0.15 Score=44.47 Aligned_cols=34 Identities=29% Similarity=0.436 Sum_probs=25.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
..+++|.|+.|.|||||++.++..... ..+.+++
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~ 58 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILL 58 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEE
Confidence 358999999999999999999875433 3344444
No 473
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.74 E-value=0.056 Score=50.05 Aligned_cols=24 Identities=25% Similarity=0.198 Sum_probs=19.1
Q ss_pred eEEEEEEccCCCchhHHH-HHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLA-RVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA-~~~~~~ 160 (445)
.+.++|.|.+|+|||+|| ..+.+.
T Consensus 69 GQr~~Ifg~~g~GKt~L~l~~i~~~ 93 (274)
T cd01132 69 GQRELIIGDRQTGKTAIAIDTIINQ 93 (274)
T ss_pred CCEEEeeCCCCCCccHHHHHHHHHh
Confidence 357899999999999996 555554
No 474
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=94.73 E-value=0.04 Score=53.06 Aligned_cols=46 Identities=24% Similarity=0.236 Sum_probs=34.7
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+||.+..+..|.-.+-. ++..-+.|.|.+|+|||||++.+..-+
T Consensus 4 ~~ivgq~~~~~al~~~~~~--~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVID--PKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred cccccHHHHHHHHHHHhcC--CCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999888777554442 223457799999999999999998643
No 475
>PRK02496 adk adenylate kinase; Provisional
Probab=94.72 E-value=0.024 Score=49.65 Aligned_cols=23 Identities=30% Similarity=0.236 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+.|.|++|+||||+|+.++..+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998765
No 476
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.72 E-value=0.033 Score=45.03 Aligned_cols=26 Identities=31% Similarity=0.235 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|.+.|.=|.||||+++.++..+
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999998864
No 477
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=94.69 E-value=0.061 Score=53.52 Aligned_cols=93 Identities=20% Similarity=0.169 Sum_probs=50.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCC------CCCCcChhh---
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLP------DTSTWNVYD--- 207 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~------~~~~~~~~~--- 207 (445)
...++|.|.+|+|||+|+..++.....+...++.+.-+++ ....+..+.+++...-.... ..+......
T Consensus 143 GQr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGE--R~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 143 GGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGE--RTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CCEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecC--CchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 4588999999999999999988765444333333332221 12334444554433211000 011111111
Q ss_pred --hHHHHHHHH---ccCcEEEEEcCCCCH
Q 045345 208 --GLKMIGSRL---RYRKVLLIVDAAFDL 231 (445)
Q Consensus 208 --~~~~l~~~l---~~~~~LlVlDdv~~~ 231 (445)
..-.+.+++ +++.+||++||+...
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~ 249 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRF 249 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHH
Confidence 112234444 468999999999644
No 478
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.68 E-value=0.041 Score=48.78 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=28.9
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..+.+...+.. +-+++.|.|++|.|||+++..+...+...
T Consensus 6 Q~~a~~~~l~~---~~~~~~l~G~aGtGKT~~l~~~~~~~~~~ 45 (196)
T PF13604_consen 6 QREAVRAILTS---GDRVSVLQGPAGTGKTTLLKALAEALEAA 45 (196)
T ss_dssp HHHHHHHHHHC---TCSEEEEEESTTSTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhc---CCeEEEEEECCCCCHHHHHHHHHHHHHhC
Confidence 34555555552 33688899999999999999988765443
No 479
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.68 E-value=0.033 Score=47.13 Aligned_cols=27 Identities=41% Similarity=0.586 Sum_probs=23.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
-.++|.|++|.|||||.+.++.-+...
T Consensus 30 e~iaitGPSG~GKStllk~va~Lisp~ 56 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLISPT 56 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhccCCC
Confidence 378899999999999999999876554
No 480
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.66 E-value=0.029 Score=54.08 Aligned_cols=45 Identities=22% Similarity=0.190 Sum_probs=34.7
Q ss_pred ccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 116 LVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 116 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+||....++++.+.+..-.....-|.|+|.+|+||+++|+.++..
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHh
Confidence 478888888887776653223346789999999999999998764
No 481
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=94.66 E-value=0.027 Score=47.51 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
++++.|.+|+||||++..+...+..
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~ 25 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRA 25 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3789999999999999999876543
No 482
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=94.65 E-value=0.034 Score=44.73 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=24.7
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+++.|.||+||||++..++..+...-..+..++
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id 34 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAID 34 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 689999999999999999887654433344443
No 483
>PLN02459 probable adenylate kinase
Probab=94.62 E-value=0.26 Score=45.41 Aligned_cols=91 Identities=23% Similarity=0.175 Sum_probs=46.9
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCccccceeeehhhh-hhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVRE-ISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR 217 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~-~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 217 (445)
.+.|.|++|+||||+|..++..+. |..+.-=..++. +.....+....+.++.. ...-+.+.....+.+.+.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~--~~~is~gdllR~ei~~~t~lg~~i~~~~~~------G~lVPdeiv~~ll~~~l~ 102 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLG--VPHIATGDLVREEIKSSGPLGAQLKEIVNQ------GKLVPDEIIFSLLSKRLE 102 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcEEeCcHHHHHHHhccchhHHHHHHHHHc------CCccCHHHHHHHHHHHHh
Confidence 366789999999999999988652 211111111111 11111122222222111 112223334555666664
Q ss_pred c----CcEEEEEcCCC-CHHHHHHh
Q 045345 218 Y----RKVLLIVDAAF-DLKQLESL 237 (445)
Q Consensus 218 ~----~~~LlVlDdv~-~~~~l~~l 237 (445)
. ..--+|||.+- +..|.+.|
T Consensus 103 ~~~~~~~~g~iLDGFPRt~~Qa~~L 127 (261)
T PLN02459 103 AGEEEGESGFILDGFPRTVRQAEIL 127 (261)
T ss_pred cccccCCceEEEeCCCCCHHHHHHH
Confidence 3 34569999984 66666665
No 484
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=94.61 E-value=0.036 Score=48.57 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++.|.|++|.||||+|+.+...+.
T Consensus 18 ~~~i~i~G~~GsGKstla~~l~~~l~ 43 (184)
T TIGR00455 18 GVVIWLTGLSGSGKSTIANALEKKLE 43 (184)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999988754
No 485
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=94.61 E-value=0.027 Score=52.88 Aligned_cols=27 Identities=37% Similarity=0.535 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+.|+|+|-||+||||+|..++..+...
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~ 27 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEM 27 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHC
Confidence 468899999999999999988765443
No 486
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=94.60 E-value=0.032 Score=50.30 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|+.|.||||+|+.++.++.
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~ 27 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLG 27 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987653
No 487
>PRK13695 putative NTPase; Provisional
Probab=94.56 E-value=0.03 Score=48.61 Aligned_cols=24 Identities=46% Similarity=0.634 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++|+|.+|+|||||+..++..+.
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l~ 25 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELLK 25 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999887654
No 488
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=94.55 E-value=0.14 Score=48.98 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++|.|..|.|||||.+.++....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35789999999999999998887654
No 489
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.54 E-value=0.03 Score=50.64 Aligned_cols=22 Identities=36% Similarity=0.641 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
-.|+|.|++|+|||||.+.++-
T Consensus 30 EfvsilGpSGcGKSTLLriiAG 51 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAG 51 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=94.51 E-value=0.048 Score=53.04 Aligned_cols=95 Identities=14% Similarity=0.087 Sum_probs=53.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccc---cceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFE---ASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIG 213 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~ 213 (445)
...|.|+|+.|.||||++..+...+....+ .++.+.+..+.. ...... .. ..... .....+.......++
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~~----~~~~~~-~~-~~v~Q-~~v~~~~~~~~~~l~ 206 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEFV----YDEIET-IS-ASVCQ-SEIPRHLNNFAAGVR 206 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceEe----cccccc-cc-ceeee-eeccccccCHHHHHH
Confidence 369999999999999999999887644332 123332211110 000000 00 00000 000111223455677
Q ss_pred HHHccCcEEEEEcCCCCHHHHHHhc
Q 045345 214 SRLRYRKVLLIVDAAFDLKQLESLA 238 (445)
Q Consensus 214 ~~l~~~~~LlVlDdv~~~~~l~~l~ 238 (445)
..|+..|-.+++..+.+.+.....+
T Consensus 207 ~aLR~~Pd~i~vGEiRd~et~~~al 231 (358)
T TIGR02524 207 NALRRKPHAILVGEARDAETISAAL 231 (358)
T ss_pred HHhccCCCEEeeeeeCCHHHHHHHH
Confidence 7888899999999998887765443
No 491
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=94.50 E-value=0.045 Score=52.31 Aligned_cols=27 Identities=33% Similarity=0.500 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....|+|+|++|+||||+++.++..+.
T Consensus 132 ~~~~I~l~G~~GsGKStvg~~La~~Lg 158 (309)
T PRK08154 132 RRRRIALIGLRGAGKSTLGRMLAARLG 158 (309)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999988763
No 492
>PLN02796 D-glycerate 3-kinase
Probab=94.50 E-value=0.032 Score=53.41 Aligned_cols=28 Identities=36% Similarity=0.338 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..-+|+|.|..|+|||||++.+...+..
T Consensus 99 ~pliIGI~G~sGSGKSTLa~~L~~lL~~ 126 (347)
T PLN02796 99 PPLVIGISAPQGCGKTTLVFALVYLFNA 126 (347)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 3568999999999999999999887654
No 493
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.49 E-value=0.035 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=23.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
-+|+|=||+|.||+|+|+.++.++.-.
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~ 31 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFH 31 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCC
Confidence 589999999999999999999986543
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.48 E-value=0.042 Score=38.41 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=19.2
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+..|+|..|.|||||..++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7889999999999999887553
No 495
>PF07088 GvpD: GvpD gas vesicle protein; InterPro: IPR009788 This family consists of several archaeal GvpD gas vesicle proteins. GvpD is thought to be involved in the regulation of gas vesicle formation [,].; GO: 0005524 ATP binding
Probab=94.48 E-value=0.034 Score=53.40 Aligned_cols=30 Identities=27% Similarity=0.199 Sum_probs=26.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
...+.|-|+||.|||++|..+.+.++++.+
T Consensus 10 G~TLLIKG~PGTGKTtfaLelL~~l~~~~~ 39 (484)
T PF07088_consen 10 GQTLLIKGEPGTGKTTFALELLNSLKDHGN 39 (484)
T ss_pred CcEEEEecCCCCCceeeehhhHHHHhccCC
Confidence 467889999999999999999998877654
No 496
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=94.46 E-value=0.029 Score=55.39 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
-++.|+|+|.+|.|||||+.+++..+
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~ 243 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIF 243 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998753
No 497
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.45 E-value=0.033 Score=44.59 Aligned_cols=21 Identities=29% Similarity=0.455 Sum_probs=19.4
Q ss_pred EEEEccCCCchhHHHHHHHhh
Q 045345 140 IGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~ 160 (445)
|+|.|++|+|||||...+...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999973
No 498
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=94.45 E-value=0.03 Score=47.56 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|+++|.+|+|||||+..+...
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~ 23 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYD 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998753
No 499
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=94.44 E-value=0.13 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++|.|..|+|||||+..++...
T Consensus 162 GqrigI~G~sG~GKSTLL~~I~~~~ 186 (444)
T PRK08972 162 GQRMGLFAGSGVGKSVLLGMMTRGT 186 (444)
T ss_pred CCEEEEECCCCCChhHHHHHhccCC
Confidence 3579999999999999999988643
No 500
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=94.44 E-value=0.025 Score=50.83 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=19.4
Q ss_pred eEEEEEEccCCCchhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVY 158 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~ 158 (445)
...+.|+|.+|+||||+|+.+.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 3568999999999999999875
Done!