Query 045345
Match_columns 445
No_of_seqs 410 out of 2642
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 21:51:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045345.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045345hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 100.0 8.3E-43 2.8E-47 358.3 18.2 290 117-418 131-472 (549)
2 3sfz_A APAF-1, apoptotic pepti 100.0 3.1E-38 1.1E-42 354.5 21.1 298 109-417 119-452 (1249)
3 1z6t_A APAF-1, apoptotic prote 100.0 2.3E-36 7.8E-41 314.1 21.4 321 110-441 120-495 (591)
4 1vt4_I APAF-1 related killer D 100.0 2.4E-36 8.1E-41 316.6 14.3 293 115-438 129-459 (1221)
5 3jrn_A AT1G72930 protein; TIR 100.0 1.6E-33 5.4E-38 239.9 8.1 103 1-110 73-175 (176)
6 3ozi_A L6TR; plant TIR domain, 100.0 8.7E-32 3E-36 232.6 4.2 98 1-102 100-199 (204)
7 2qen_A Walker-type ATPase; unk 99.8 7.7E-19 2.6E-23 169.8 20.1 285 105-411 3-349 (350)
8 2fna_A Conserved hypothetical 99.8 7.7E-18 2.6E-22 163.1 21.6 284 105-410 4-356 (357)
9 1w5s_A Origin recognition comp 99.7 6.6E-16 2.2E-20 152.7 22.4 271 112-395 20-371 (412)
10 2qby_B CDC6 homolog 3, cell di 99.6 2E-14 6.7E-19 140.7 23.7 268 112-395 18-339 (384)
11 2qby_A CDC6 homolog 1, cell di 99.6 7.3E-15 2.5E-19 143.6 17.9 300 112-442 18-379 (386)
12 2v1u_A Cell division control p 99.6 9.9E-14 3.4E-18 135.6 22.7 295 112-442 17-381 (387)
13 1fnn_A CDC6P, cell division co 99.6 5.1E-13 1.7E-17 130.8 22.7 294 113-417 16-387 (389)
14 3h16_A TIR protein; bacteria T 99.4 1.5E-14 5.1E-19 122.3 -0.7 54 1-56 84-137 (154)
15 1njg_A DNA polymerase III subu 99.3 5.1E-11 1.7E-15 108.1 13.5 186 112-311 21-231 (250)
16 2chg_A Replication factor C sm 99.2 1.4E-10 4.6E-15 103.8 14.5 175 111-308 14-204 (226)
17 1sxj_B Activator 1 37 kDa subu 99.2 5.7E-10 2E-14 106.0 16.4 173 112-309 19-211 (323)
18 1iqp_A RFCS; clamp loader, ext 99.0 4.2E-09 1.4E-13 100.2 14.8 175 112-309 23-213 (327)
19 3pfi_A Holliday junction ATP-d 98.9 1.1E-08 3.8E-13 97.9 14.5 248 112-406 27-324 (338)
20 1hqc_A RUVB; extended AAA-ATPa 98.9 4.8E-08 1.7E-12 92.8 17.7 245 112-400 10-303 (324)
21 2chq_A Replication factor C sm 98.8 1.1E-07 3.7E-12 89.9 17.4 171 111-308 14-204 (319)
22 3te6_A Regulatory protein SIR3 98.8 2.2E-08 7.4E-13 94.1 9.7 158 114-276 20-211 (318)
23 1jr3_A DNA polymerase III subu 98.7 2E-07 6.9E-12 90.2 15.7 181 112-309 14-222 (373)
24 3h4m_A Proteasome-activating n 98.7 1.7E-07 5.8E-12 87.3 12.1 170 111-307 14-230 (285)
25 1sxj_A Activator 1 95 kDa subu 98.6 4.5E-07 1.5E-11 91.8 15.8 183 112-307 37-252 (516)
26 3d8b_A Fidgetin-like protein 1 98.6 4.5E-07 1.5E-11 87.3 15.0 192 88-310 63-297 (357)
27 2qz4_A Paraplegin; AAA+, SPG7, 98.6 7.5E-07 2.6E-11 81.7 14.8 172 113-308 5-222 (262)
28 3uk6_A RUVB-like 2; hexameric 98.6 9.6E-07 3.3E-11 85.3 15.7 51 113-163 43-96 (368)
29 3ub2_A TOLL/interleukin-1 rece 98.6 1E-08 3.5E-13 85.1 1.3 67 1-72 75-145 (146)
30 1sxj_D Activator 1 41 kDa subu 98.6 3E-06 1E-10 81.2 18.8 183 112-307 35-234 (353)
31 3bos_A Putative DNA replicatio 98.6 1.3E-07 4.5E-12 85.4 8.6 165 111-309 25-218 (242)
32 1jbk_A CLPB protein; beta barr 98.6 2.7E-07 9.1E-12 80.0 9.9 47 113-161 21-67 (195)
33 3pvs_A Replication-associated 98.5 5E-07 1.7E-11 89.4 12.7 168 112-307 24-214 (447)
34 2p65_A Hypothetical protein PF 98.5 3E-07 1E-11 79.4 9.6 48 113-162 21-68 (187)
35 3b9p_A CG5977-PA, isoform A; A 98.4 6.9E-06 2.4E-10 76.8 17.0 174 110-309 17-234 (297)
36 1sxj_E Activator 1 40 kDa subu 98.4 2.4E-06 8.2E-11 82.0 14.1 188 111-308 11-237 (354)
37 1in4_A RUVB, holliday junction 98.4 1.1E-05 3.7E-10 76.9 17.8 249 112-405 23-320 (334)
38 1xwi_A SKD1 protein; VPS4B, AA 98.4 5.8E-06 2E-10 78.3 15.3 173 111-309 9-224 (322)
39 2z4s_A Chromosomal replication 98.4 1.9E-06 6.5E-11 85.3 12.1 171 112-307 103-305 (440)
40 1d2n_A N-ethylmaleimide-sensit 98.4 5.1E-06 1.7E-10 76.7 14.3 49 114-162 33-89 (272)
41 3eie_A Vacuolar protein sortin 98.4 4.6E-06 1.6E-10 79.0 14.3 173 111-309 15-229 (322)
42 3vfd_A Spastin; ATPase, microt 98.4 4.5E-06 1.5E-10 81.3 14.4 173 111-309 112-327 (389)
43 2zan_A Vacuolar protein sortin 98.4 7.9E-06 2.7E-10 81.0 16.0 173 111-308 131-345 (444)
44 1l8q_A Chromosomal replication 98.3 6.7E-06 2.3E-10 77.9 14.1 168 112-304 9-204 (324)
45 3cf0_A Transitional endoplasmi 98.3 2.4E-05 8.4E-10 73.3 17.6 165 112-303 13-223 (301)
46 1sxj_C Activator 1 40 kDa subu 98.3 2.4E-05 8.3E-10 74.6 17.0 170 112-304 23-208 (340)
47 2qp9_X Vacuolar protein sortin 98.3 8.1E-06 2.8E-10 78.4 13.6 172 111-308 48-261 (355)
48 3u61_B DNA polymerase accessor 98.2 1.2E-05 4.2E-10 76.1 13.2 51 111-162 23-73 (324)
49 4b4t_J 26S protease regulatory 98.2 1.7E-05 5.9E-10 76.4 13.9 162 112-301 146-354 (405)
50 3syl_A Protein CBBX; photosynt 98.2 2.2E-06 7.4E-11 80.7 7.4 47 115-161 32-91 (309)
51 3pxg_A Negative regulator of g 98.2 1.1E-05 3.9E-10 80.4 12.6 48 113-162 179-226 (468)
52 1lv7_A FTSH; alpha/beta domain 98.1 4.6E-05 1.6E-09 69.5 14.3 52 111-162 9-70 (257)
53 4b4t_M 26S protease regulatory 98.1 2E-05 6.9E-10 77.0 12.1 55 111-165 178-243 (434)
54 4b4t_L 26S protease subunit RP 98.1 3.2E-05 1.1E-09 75.7 13.2 53 113-165 180-243 (437)
55 4b4t_H 26S protease regulatory 98.1 3.2E-05 1.1E-09 75.5 13.0 160 114-301 209-415 (467)
56 1a5t_A Delta prime, HOLB; zinc 98.0 8.4E-05 2.9E-09 70.7 14.6 170 120-307 8-204 (334)
57 2r62_A Cell division protease 98.0 5.2E-06 1.8E-10 76.4 6.0 52 112-163 9-70 (268)
58 1qvr_A CLPB protein; coiled co 98.0 2.8E-05 9.7E-10 83.5 12.6 47 113-161 169-215 (854)
59 4b4t_K 26S protease regulatory 98.0 3.1E-05 1.1E-09 75.6 11.5 54 112-165 170-234 (428)
60 1ofh_A ATP-dependent HSL prote 98.0 2.2E-05 7.6E-10 73.5 9.7 49 114-162 15-75 (310)
61 4b4t_I 26S protease regulatory 98.0 6.8E-05 2.3E-09 72.6 12.9 55 111-165 179-244 (437)
62 3hu3_A Transitional endoplasmi 98.0 5.8E-05 2E-09 75.4 12.7 50 114-163 204-264 (489)
63 2w58_A DNAI, primosome compone 98.0 3.1E-05 1.1E-09 67.8 9.5 61 112-172 23-89 (202)
64 1r6b_X CLPA protein; AAA+, N-t 97.9 7.1E-05 2.4E-09 79.4 13.2 47 113-161 185-231 (758)
65 3ec2_A DNA replication protein 97.9 3.9E-05 1.3E-09 65.9 8.8 49 114-162 10-63 (180)
66 3pxi_A Negative regulator of g 97.9 8.6E-05 2.9E-09 78.7 12.6 47 113-161 179-225 (758)
67 2ce7_A Cell division protein F 97.8 0.00016 5.4E-09 71.8 13.3 164 112-301 14-221 (476)
68 1ixz_A ATP-dependent metallopr 97.8 0.00033 1.1E-08 63.7 13.3 52 111-162 13-74 (254)
69 2gno_A DNA polymerase III, gam 97.8 0.00019 6.6E-09 67.1 11.9 134 118-276 1-152 (305)
70 3cf2_A TER ATPase, transitiona 97.7 0.00016 5.4E-09 76.0 12.1 163 112-302 202-408 (806)
71 1iy2_A ATP-dependent metallopr 97.7 0.00098 3.3E-08 61.4 14.9 54 109-162 35-98 (278)
72 3n70_A Transport activator; si 97.6 2.7E-05 9.2E-10 64.4 3.4 47 115-161 2-48 (145)
73 4fcw_A Chaperone protein CLPB; 97.6 0.00014 4.9E-09 68.1 8.0 50 114-163 17-73 (311)
74 2c9o_A RUVB-like 1; hexameric 97.6 9E-05 3.1E-09 73.6 6.7 52 112-163 35-89 (456)
75 2cvh_A DNA repair and recombin 97.5 0.00027 9.3E-09 62.4 8.6 33 137-172 20-52 (220)
76 2x8a_A Nuclear valosin-contain 97.5 0.0022 7.5E-08 58.9 14.6 51 113-163 9-70 (274)
77 2js7_A Myeloid differentiation 97.5 1.1E-05 3.8E-10 67.8 -0.9 35 1-37 82-117 (160)
78 2dhr_A FTSH; AAA+ protein, hex 97.5 0.00042 1.4E-08 69.2 9.9 52 111-162 28-89 (499)
79 2vhj_A Ntpase P4, P4; non- hyd 97.4 0.00023 7.8E-09 66.3 6.9 72 137-231 123-194 (331)
80 3t15_A Ribulose bisphosphate c 97.4 0.00013 4.6E-09 67.9 5.4 27 137-163 36-62 (293)
81 2kjq_A DNAA-related protein; s 97.4 0.00018 6.3E-09 59.6 5.5 27 137-163 36-62 (149)
82 1ojl_A Transcriptional regulat 97.4 0.00023 8E-09 66.6 6.6 48 114-161 2-49 (304)
83 1ypw_A Transitional endoplasmi 97.3 0.0012 4.2E-08 70.1 12.5 53 112-164 202-265 (806)
84 3co5_A Putative two-component 97.3 4.2E-05 1.4E-09 63.1 0.4 49 114-162 4-52 (143)
85 2qgz_A Helicase loader, putati 97.3 0.00035 1.2E-08 65.5 6.6 61 112-172 122-188 (308)
86 3hr8_A Protein RECA; alpha and 97.3 0.00037 1.3E-08 66.3 6.6 99 124-231 47-151 (356)
87 2j67_A TOLL like receptor 10; 97.2 3.3E-05 1.1E-09 66.1 -1.8 33 1-35 101-134 (178)
88 3pxi_A Negative regulator of g 97.1 0.00088 3E-08 70.9 8.4 49 113-161 490-545 (758)
89 2bjv_A PSP operon transcriptio 97.1 0.00034 1.2E-08 64.0 4.5 50 113-162 5-54 (265)
90 1v5w_A DMC1, meiotic recombina 97.1 0.002 6.7E-08 61.3 9.7 37 125-161 110-146 (343)
91 1fyx_A TOLL-like receptor 2; b 97.1 2E-05 6.8E-10 65.5 -3.8 38 1-40 71-110 (149)
92 1r6b_X CLPA protein; AAA+, N-t 96.9 0.0013 4.3E-08 69.8 7.4 49 114-162 458-513 (758)
93 1n0w_A DNA repair protein RAD5 96.9 0.0018 6.2E-08 58.0 7.5 36 125-160 12-47 (243)
94 1t3g_A X-linked interleukin-1 96.9 0.00026 8.9E-09 59.3 1.7 36 1-38 78-115 (159)
95 1j8m_F SRP54, signal recogniti 96.9 0.012 4.2E-07 54.5 12.9 35 137-171 98-132 (297)
96 3bh0_A DNAB-like replicative h 96.9 0.0028 9.6E-08 59.5 8.5 51 137-193 68-118 (315)
97 2z43_A DNA repair and recombin 96.8 0.0021 7.1E-08 60.6 7.4 48 125-172 95-148 (324)
98 3io5_A Recombination and repai 96.8 0.0015 5.1E-08 60.7 5.9 83 139-230 30-122 (333)
99 3hws_A ATP-dependent CLP prote 96.8 0.001 3.5E-08 63.8 5.0 48 115-162 16-76 (363)
100 1qhx_A CPT, protein (chloramph 96.8 0.00076 2.6E-08 57.4 3.5 26 138-163 4-29 (178)
101 2zr9_A Protein RECA, recombina 96.7 0.0015 5.1E-08 62.2 5.6 97 125-230 48-150 (349)
102 1vma_A Cell division protein F 96.7 0.0084 2.9E-07 55.8 10.5 28 136-163 103-130 (306)
103 2r44_A Uncharacterized protein 96.7 0.00076 2.6E-08 63.8 3.5 48 114-165 27-74 (331)
104 1xp8_A RECA protein, recombina 96.7 0.003 1E-07 60.4 7.6 96 125-229 61-162 (366)
105 3dm5_A SRP54, signal recogniti 96.7 0.022 7.7E-07 55.5 13.7 29 136-164 99-127 (443)
106 1u94_A RECA protein, recombina 96.7 0.0017 5.8E-08 62.0 5.5 48 125-172 50-98 (356)
107 1rz3_A Hypothetical protein rb 96.6 0.0017 5.8E-08 56.6 5.0 43 119-161 3-46 (201)
108 3m6a_A ATP-dependent protease 96.6 0.0068 2.3E-07 61.4 9.9 52 114-165 81-136 (543)
109 1g8p_A Magnesium-chelatase 38 96.6 0.0012 4.1E-08 62.8 4.1 50 111-162 21-70 (350)
110 3c8u_A Fructokinase; YP_612366 96.6 0.0018 6.3E-08 56.7 4.9 40 123-162 8-47 (208)
111 1odf_A YGR205W, hypothetical 3 96.6 0.014 4.7E-07 53.9 10.7 30 134-163 28-57 (290)
112 3kb2_A SPBC2 prophage-derived 96.6 0.0013 4.3E-08 55.5 3.4 25 138-162 2-26 (173)
113 2w0m_A SSO2452; RECA, SSPF, un 96.5 0.0061 2.1E-07 54.0 7.9 35 138-172 24-58 (235)
114 2i1q_A DNA repair and recombin 96.5 0.0043 1.5E-07 58.4 7.2 36 125-160 86-121 (322)
115 1zu4_A FTSY; GTPase, signal re 96.5 0.0045 1.6E-07 58.1 7.2 28 136-163 104-131 (320)
116 2q6t_A DNAB replication FORK h 96.5 0.039 1.3E-06 54.3 14.1 67 123-196 187-254 (444)
117 3sr0_A Adenylate kinase; phosp 96.4 0.012 4.1E-07 51.4 9.1 23 139-161 2-24 (206)
118 3trf_A Shikimate kinase, SK; a 96.4 0.0016 5.5E-08 55.8 3.4 24 138-161 6-29 (185)
119 1ypw_A Transitional endoplasmi 96.4 0.0027 9.2E-08 67.5 5.6 53 112-164 475-538 (806)
120 1ex7_A Guanylate kinase; subst 96.4 0.0015 5.1E-08 56.2 2.8 28 138-165 2-29 (186)
121 3cf2_A TER ATPase, transitiona 96.4 0.013 4.5E-07 61.6 10.4 52 113-164 476-538 (806)
122 3nbx_X ATPase RAVA; AAA+ ATPas 96.4 0.0024 8.1E-08 63.8 4.7 45 114-162 22-66 (500)
123 3vaa_A Shikimate kinase, SK; s 96.4 0.0018 6.1E-08 56.3 3.3 25 137-161 25-49 (199)
124 3umf_A Adenylate kinase; rossm 96.4 0.018 6.1E-07 50.7 9.8 27 135-161 27-53 (217)
125 3lw7_A Adenylate kinase relate 96.4 0.0019 6.6E-08 54.4 3.4 23 138-161 2-24 (179)
126 2xxa_A Signal recognition part 96.4 0.039 1.3E-06 53.9 13.1 29 136-164 99-127 (433)
127 1um8_A ATP-dependent CLP prote 96.4 0.0027 9.3E-08 61.2 4.8 26 138-163 73-98 (376)
128 1kgd_A CASK, peripheral plasma 96.3 0.0025 8.4E-08 54.5 3.8 26 137-162 5-30 (180)
129 1ly1_A Polynucleotide kinase; 96.3 0.0024 8.4E-08 54.2 3.5 22 138-159 3-24 (181)
130 1kag_A SKI, shikimate kinase I 96.2 0.0022 7.4E-08 54.2 3.0 25 138-162 5-29 (173)
131 2px0_A Flagellar biosynthesis 96.2 0.012 4.1E-07 54.5 8.2 26 137-162 105-130 (296)
132 1zp6_A Hypothetical protein AT 96.2 0.0028 9.5E-08 54.5 3.5 24 137-160 9-32 (191)
133 2rhm_A Putative kinase; P-loop 96.2 0.0037 1.3E-07 53.7 4.2 25 137-161 5-29 (193)
134 3bgw_A DNAB-like replicative h 96.2 0.032 1.1E-06 54.8 11.4 49 123-172 184-232 (444)
135 3tlx_A Adenylate kinase 2; str 96.2 0.0035 1.2E-07 56.5 4.1 41 121-161 13-53 (243)
136 1zuh_A Shikimate kinase; alpha 96.2 0.0029 9.8E-08 53.3 3.3 26 137-162 7-32 (168)
137 1nks_A Adenylate kinase; therm 96.2 0.0029 9.9E-08 54.3 3.4 26 138-163 2-27 (194)
138 3iij_A Coilin-interacting nucl 96.2 0.0023 7.9E-08 54.5 2.8 25 137-161 11-35 (180)
139 1pzn_A RAD51, DNA repair and r 96.2 0.0094 3.2E-07 56.7 7.3 26 136-161 130-155 (349)
140 3tau_A Guanylate kinase, GMP k 96.1 0.0032 1.1E-07 55.2 3.6 27 137-163 8-34 (208)
141 1tue_A Replication protein E1; 96.1 0.0043 1.5E-07 53.8 4.2 42 121-163 43-84 (212)
142 2b8t_A Thymidine kinase; deoxy 96.1 0.0011 3.6E-08 58.9 0.4 35 137-171 12-46 (223)
143 4a1f_A DNAB helicase, replicat 96.1 0.024 8.3E-07 53.4 9.6 53 137-195 46-98 (338)
144 3uie_A Adenylyl-sulfate kinase 96.1 0.0035 1.2E-07 54.5 3.7 27 136-162 24-50 (200)
145 2ze6_A Isopentenyl transferase 96.1 0.0034 1.2E-07 56.9 3.7 25 138-162 2-26 (253)
146 3lda_A DNA repair protein RAD5 96.1 0.014 4.9E-07 56.4 8.2 37 123-159 164-200 (400)
147 1qvr_A CLPB protein; coiled co 96.1 0.0099 3.4E-07 63.7 7.8 49 114-162 558-613 (854)
148 2ga8_A Hypothetical 39.9 kDa p 96.1 0.0038 1.3E-07 59.0 4.0 46 120-165 5-52 (359)
149 3a00_A Guanylate kinase, GMP k 96.0 0.0035 1.2E-07 53.8 3.3 28 138-165 2-29 (186)
150 1via_A Shikimate kinase; struc 96.0 0.0034 1.2E-07 53.2 3.2 24 139-162 6-29 (175)
151 1kht_A Adenylate kinase; phosp 96.0 0.0034 1.2E-07 53.8 3.2 25 138-162 4-28 (192)
152 1knq_A Gluconate kinase; ALFA/ 96.0 0.0047 1.6E-07 52.3 4.0 25 137-161 8-32 (175)
153 1gvn_B Zeta; postsegregational 96.0 0.0059 2E-07 56.4 5.0 26 136-161 32-57 (287)
154 3e70_C DPA, signal recognition 96.0 0.042 1.4E-06 51.6 10.9 28 136-163 128-155 (328)
155 2iyv_A Shikimate kinase, SK; t 96.0 0.0027 9.4E-08 54.2 2.5 23 139-161 4-26 (184)
156 2jaq_A Deoxyguanosine kinase; 96.0 0.0038 1.3E-07 54.1 3.5 25 139-163 2-26 (205)
157 2yvu_A Probable adenylyl-sulfa 96.0 0.0047 1.6E-07 52.9 3.9 26 137-162 13-38 (186)
158 3t61_A Gluconokinase; PSI-biol 96.0 0.0032 1.1E-07 54.7 2.9 24 138-161 19-42 (202)
159 2c95_A Adenylate kinase 1; tra 96.0 0.0041 1.4E-07 53.6 3.5 25 137-161 9-33 (196)
160 2r6a_A DNAB helicase, replicat 96.0 0.03 1E-06 55.3 10.1 36 137-172 203-239 (454)
161 1ukz_A Uridylate kinase; trans 95.9 0.0052 1.8E-07 53.4 4.1 26 136-161 14-39 (203)
162 1q57_A DNA primase/helicase; d 95.9 0.031 1.1E-06 56.0 10.3 53 137-195 242-295 (503)
163 2vli_A Antibiotic resistance p 95.9 0.0034 1.2E-07 53.5 2.8 26 137-162 5-30 (183)
164 3cmu_A Protein RECA, recombina 95.9 0.0066 2.3E-07 69.5 5.8 95 126-229 1415-1515(2050)
165 1y63_A LMAJ004144AAA protein; 95.9 0.0048 1.6E-07 52.8 3.7 24 137-160 10-33 (184)
166 4eun_A Thermoresistant glucoki 95.9 0.0041 1.4E-07 54.1 3.2 25 137-161 29-53 (200)
167 3kl4_A SRP54, signal recogniti 95.9 0.015 5E-07 56.8 7.4 28 136-163 96-123 (433)
168 1e6c_A Shikimate kinase; phosp 95.9 0.0036 1.2E-07 52.7 2.7 25 138-162 3-27 (173)
169 3ney_A 55 kDa erythrocyte memb 95.9 0.0051 1.8E-07 53.2 3.7 26 137-162 19-44 (197)
170 3cm0_A Adenylate kinase; ATP-b 95.9 0.0056 1.9E-07 52.3 4.0 25 137-161 4-28 (186)
171 2qor_A Guanylate kinase; phosp 95.9 0.0036 1.2E-07 54.6 2.7 26 137-162 12-37 (204)
172 3k1j_A LON protease, ATP-depen 95.9 0.0065 2.2E-07 62.4 5.0 49 111-163 38-86 (604)
173 1uj2_A Uridine-cytidine kinase 95.9 0.0049 1.7E-07 55.8 3.7 27 136-162 21-47 (252)
174 1tev_A UMP-CMP kinase; ploop, 95.9 0.0051 1.8E-07 52.8 3.7 24 138-161 4-27 (196)
175 2bwj_A Adenylate kinase 5; pho 95.8 0.0046 1.6E-07 53.4 3.3 25 138-162 13-37 (199)
176 2pt5_A Shikimate kinase, SK; a 95.8 0.0055 1.9E-07 51.4 3.5 24 139-162 2-25 (168)
177 1aky_A Adenylate kinase; ATP:A 95.8 0.0052 1.8E-07 54.2 3.4 26 137-162 4-29 (220)
178 2bdt_A BH3686; alpha-beta prot 95.8 0.0054 1.8E-07 52.6 3.5 22 138-159 3-24 (189)
179 1uf9_A TT1252 protein; P-loop, 95.8 0.006 2.1E-07 52.8 3.7 25 136-160 7-31 (203)
180 1qf9_A UMP/CMP kinase, protein 95.8 0.0059 2E-07 52.3 3.7 25 137-161 6-30 (194)
181 3tr0_A Guanylate kinase, GMP k 95.8 0.0052 1.8E-07 53.4 3.2 24 138-161 8-31 (205)
182 1g41_A Heat shock protein HSLU 95.8 0.0088 3E-07 58.5 5.1 52 114-165 15-78 (444)
183 1sky_E F1-ATPase, F1-ATP synth 95.7 0.013 4.6E-07 57.4 6.4 30 139-168 153-182 (473)
184 2plr_A DTMP kinase, probable t 95.7 0.0057 1.9E-07 53.4 3.4 26 138-163 5-30 (213)
185 1xjc_A MOBB protein homolog; s 95.7 0.0057 1.9E-07 51.5 3.2 28 137-164 4-31 (169)
186 1cke_A CK, MSSA, protein (cyti 95.7 0.0053 1.8E-07 54.3 3.2 24 138-161 6-29 (227)
187 2cdn_A Adenylate kinase; phosp 95.7 0.006 2.1E-07 52.9 3.5 25 137-161 20-44 (201)
188 2if2_A Dephospho-COA kinase; a 95.7 0.0057 1.9E-07 53.2 3.2 21 139-159 3-23 (204)
189 4gp7_A Metallophosphoesterase; 95.7 0.0054 1.8E-07 51.9 2.9 22 137-158 9-30 (171)
190 2j41_A Guanylate kinase; GMP, 95.7 0.0062 2.1E-07 52.9 3.4 24 138-161 7-30 (207)
191 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.0067 2.3E-07 55.2 3.6 25 137-161 4-28 (260)
192 3asz_A Uridine kinase; cytidin 95.6 0.0068 2.3E-07 53.0 3.6 27 136-162 5-31 (211)
193 3tqc_A Pantothenate kinase; bi 95.6 0.0083 2.8E-07 56.2 4.3 47 116-162 69-117 (321)
194 2pbr_A DTMP kinase, thymidylat 95.6 0.0062 2.1E-07 52.3 3.2 23 139-161 2-24 (195)
195 1nn5_A Similar to deoxythymidy 95.6 0.0065 2.2E-07 53.1 3.4 26 137-162 9-34 (215)
196 2qt1_A Nicotinamide riboside k 95.6 0.0081 2.8E-07 52.4 3.9 25 137-161 21-45 (207)
197 1jjv_A Dephospho-COA kinase; P 95.6 0.0067 2.3E-07 52.9 3.4 22 138-159 3-24 (206)
198 2grj_A Dephospho-COA kinase; T 95.6 0.0077 2.6E-07 52.0 3.7 25 136-160 11-35 (192)
199 1ye8_A Protein THEP1, hypothet 95.6 0.0069 2.3E-07 51.6 3.2 23 139-161 2-24 (178)
200 3fb4_A Adenylate kinase; psych 95.6 0.0067 2.3E-07 53.2 3.2 23 139-161 2-24 (216)
201 4a74_A DNA repair and recombin 95.5 0.0083 2.8E-07 53.1 3.8 25 137-161 25-49 (231)
202 3dl0_A Adenylate kinase; phosp 95.5 0.0072 2.5E-07 53.1 3.3 23 139-161 2-24 (216)
203 1zd8_A GTP:AMP phosphotransfer 95.5 0.0078 2.7E-07 53.4 3.6 25 137-161 7-31 (227)
204 2dr3_A UPF0273 protein PH0284; 95.5 0.0069 2.4E-07 54.2 3.2 36 137-172 23-58 (247)
205 3zvl_A Bifunctional polynucleo 95.5 0.043 1.5E-06 53.5 9.1 26 136-161 257-282 (416)
206 1zak_A Adenylate kinase; ATP:A 95.5 0.0068 2.3E-07 53.6 3.0 26 137-162 5-30 (222)
207 2wwf_A Thymidilate kinase, put 95.5 0.0076 2.6E-07 52.6 3.2 26 137-162 10-35 (212)
208 3p32_A Probable GTPase RV1496/ 95.4 0.016 5.5E-07 55.2 5.7 39 124-162 66-104 (355)
209 2bbw_A Adenylate kinase 4, AK4 95.4 0.0077 2.6E-07 54.2 3.2 25 137-161 27-51 (246)
210 2pez_A Bifunctional 3'-phospho 95.4 0.0094 3.2E-07 50.6 3.6 25 137-161 5-29 (179)
211 3jvv_A Twitching mobility prot 95.4 0.029 9.8E-07 53.4 7.2 90 138-237 124-214 (356)
212 2z0h_A DTMP kinase, thymidylat 95.4 0.0083 2.8E-07 51.6 3.2 23 139-161 2-24 (197)
213 4e22_A Cytidylate kinase; P-lo 95.4 0.009 3.1E-07 54.0 3.6 26 137-162 27-52 (252)
214 3cmw_A Protein RECA, recombina 95.4 0.026 8.9E-07 63.9 7.7 96 125-229 1418-1519(1706)
215 1lvg_A Guanylate kinase, GMP k 95.3 0.0069 2.4E-07 52.6 2.5 24 138-161 5-28 (198)
216 2v54_A DTMP kinase, thymidylat 95.3 0.0096 3.3E-07 51.6 3.4 24 138-161 5-28 (204)
217 2p5t_B PEZT; postsegregational 95.3 0.0098 3.4E-07 53.8 3.5 26 137-162 32-57 (253)
218 1s96_A Guanylate kinase, GMP k 95.3 0.012 3.9E-07 52.1 3.8 26 137-162 16-41 (219)
219 1ls1_A Signal recognition part 95.3 0.04 1.4E-06 51.0 7.7 28 136-163 97-124 (295)
220 2hf9_A Probable hydrogenase ni 95.3 0.013 4.5E-07 51.6 4.3 39 122-162 25-63 (226)
221 2ffh_A Protein (FFH); SRP54, s 95.3 0.064 2.2E-06 52.2 9.3 29 136-164 97-125 (425)
222 3nwj_A ATSK2; P loop, shikimat 95.3 0.008 2.7E-07 54.2 2.8 25 138-162 49-73 (250)
223 1gtv_A TMK, thymidylate kinase 95.2 0.0059 2E-07 53.4 1.8 24 139-162 2-25 (214)
224 2wsm_A Hydrogenase expression/ 95.2 0.013 4.5E-07 51.5 4.1 43 120-164 15-57 (221)
225 3a8t_A Adenylate isopentenyltr 95.2 0.0098 3.3E-07 55.8 3.3 26 137-162 40-65 (339)
226 1u0j_A DNA replication protein 95.2 0.017 5.9E-07 52.2 4.8 38 123-160 90-127 (267)
227 3be4_A Adenylate kinase; malar 95.2 0.0095 3.3E-07 52.4 3.0 24 138-161 6-29 (217)
228 2jeo_A Uridine-cytidine kinase 95.2 0.012 4E-07 52.9 3.7 25 137-161 25-49 (245)
229 3ake_A Cytidylate kinase; CMP 95.2 0.012 4E-07 51.2 3.5 24 139-162 4-27 (208)
230 3d3q_A TRNA delta(2)-isopenten 95.2 0.011 3.9E-07 55.5 3.6 25 138-162 8-32 (340)
231 3aez_A Pantothenate kinase; tr 95.1 0.012 4.1E-07 55.0 3.6 27 136-162 89-115 (312)
232 2j37_W Signal recognition part 95.1 0.1 3.5E-06 51.9 10.6 27 136-162 100-126 (504)
233 1znw_A Guanylate kinase, GMP k 95.1 0.011 3.7E-07 51.6 3.1 25 137-161 20-44 (207)
234 2ewv_A Twitching motility prot 95.1 0.038 1.3E-06 53.0 7.2 91 137-237 136-227 (372)
235 3r20_A Cytidylate kinase; stru 95.1 0.012 4.2E-07 52.3 3.4 24 138-161 10-33 (233)
236 2f6r_A COA synthase, bifunctio 95.1 0.013 4.4E-07 53.9 3.7 24 136-159 74-97 (281)
237 1m7g_A Adenylylsulfate kinase; 95.1 0.013 4.6E-07 51.2 3.7 26 137-162 25-50 (211)
238 3crm_A TRNA delta(2)-isopenten 95.1 0.012 4E-07 55.0 3.4 25 138-162 6-30 (323)
239 3exa_A TRNA delta(2)-isopenten 95.0 0.013 4.6E-07 54.2 3.5 24 138-161 4-27 (322)
240 1a7j_A Phosphoribulokinase; tr 95.0 0.008 2.7E-07 55.6 2.0 26 136-161 4-29 (290)
241 1rj9_A FTSY, signal recognitio 95.0 0.016 5.6E-07 53.8 4.1 29 136-164 101-129 (304)
242 1e4v_A Adenylate kinase; trans 95.0 0.013 4.3E-07 51.5 3.2 23 139-161 2-24 (214)
243 2zts_A Putative uncharacterize 95.0 0.013 4.5E-07 52.4 3.4 24 137-160 30-53 (251)
244 1vht_A Dephospho-COA kinase; s 95.0 0.016 5.4E-07 51.0 3.7 23 137-159 4-26 (218)
245 1z6g_A Guanylate kinase; struc 95.0 0.01 3.6E-07 52.3 2.6 25 137-161 23-47 (218)
246 2xb4_A Adenylate kinase; ATP-b 95.0 0.013 4.5E-07 51.8 3.2 23 139-161 2-24 (223)
247 3ice_A Transcription terminati 95.0 0.01 3.4E-07 56.6 2.5 28 137-164 174-201 (422)
248 1ak2_A Adenylate kinase isoenz 95.0 0.014 4.9E-07 51.9 3.4 25 138-162 17-41 (233)
249 1htw_A HI0065; nucleotide-bind 94.9 0.017 5.7E-07 48.1 3.6 26 136-161 32-57 (158)
250 2qmh_A HPR kinase/phosphorylas 94.9 0.015 5.1E-07 50.1 3.3 24 138-161 35-58 (205)
251 2ehv_A Hypothetical protein PH 94.8 0.014 4.8E-07 52.3 3.1 23 137-159 30-52 (251)
252 3cmu_A Protein RECA, recombina 94.8 0.069 2.4E-06 61.3 9.2 100 121-229 366-471 (2050)
253 3foz_A TRNA delta(2)-isopenten 94.8 0.017 5.8E-07 53.4 3.5 25 137-161 10-34 (316)
254 3fwy_A Light-independent proto 94.8 0.018 6.1E-07 53.9 3.7 29 135-163 46-74 (314)
255 1svm_A Large T antigen; AAA+ f 94.7 0.027 9.1E-07 54.0 4.8 26 136-161 168-193 (377)
256 3lnc_A Guanylate kinase, GMP k 94.7 0.01 3.6E-07 52.7 1.8 25 137-161 27-52 (231)
257 3cmw_A Protein RECA, recombina 94.7 0.03 1E-06 63.4 5.8 98 123-229 368-471 (1706)
258 1sq5_A Pantothenate kinase; P- 94.6 0.02 6.8E-07 53.4 3.7 27 136-162 79-105 (308)
259 1np6_A Molybdopterin-guanine d 94.6 0.018 6.3E-07 48.7 3.1 26 137-162 6-31 (174)
260 1ltq_A Polynucleotide kinase; 94.6 0.02 6.7E-07 53.1 3.5 23 138-160 3-25 (301)
261 2f1r_A Molybdopterin-guanine d 94.6 0.012 4.2E-07 49.7 1.9 25 138-162 3-27 (171)
262 2eyu_A Twitching motility prot 94.5 0.022 7.5E-07 51.7 3.6 90 137-236 25-115 (261)
263 2i3b_A HCR-ntpase, human cance 94.5 0.017 5.8E-07 49.7 2.7 24 139-162 3-26 (189)
264 1g8f_A Sulfate adenylyltransfe 94.5 0.028 9.5E-07 56.0 4.5 48 116-163 374-421 (511)
265 4eaq_A DTMP kinase, thymidylat 94.5 0.045 1.5E-06 48.6 5.4 27 137-163 26-52 (229)
266 3b85_A Phosphate starvation-in 94.4 0.019 6.6E-07 50.2 2.9 23 138-160 23-45 (208)
267 1cr0_A DNA primase/helicase; R 94.4 0.021 7.3E-07 52.8 3.3 25 138-162 36-60 (296)
268 1yrb_A ATP(GTP)binding protein 94.4 0.032 1.1E-06 50.3 4.5 27 136-162 13-39 (262)
269 2r8r_A Sensor protein; KDPD, P 94.4 0.036 1.2E-06 48.8 4.5 26 139-164 8-33 (228)
270 3b9q_A Chloroplast SRP recepto 94.4 0.025 8.7E-07 52.5 3.7 26 137-162 100-125 (302)
271 1g5t_A COB(I)alamin adenosyltr 94.4 0.026 9E-07 48.5 3.5 34 138-171 29-62 (196)
272 1q3t_A Cytidylate kinase; nucl 94.3 0.027 9.1E-07 50.2 3.6 26 136-161 15-40 (236)
273 2pcj_A ABC transporter, lipopr 94.3 0.02 6.9E-07 50.7 2.8 34 138-172 31-64 (224)
274 3tif_A Uncharacterized ABC tra 94.3 0.02 7E-07 51.1 2.8 34 138-172 32-65 (235)
275 2onk_A Molybdate/tungstate ABC 94.3 0.024 8.1E-07 50.8 3.1 25 138-162 25-49 (240)
276 2qi9_C Vitamin B12 import ATP- 94.2 0.026 9E-07 50.8 3.4 33 138-172 27-59 (249)
277 2pt7_A CAG-ALFA; ATPase, prote 94.2 0.093 3.2E-06 49.3 7.3 83 138-233 172-254 (330)
278 3eph_A TRNA isopentenyltransfe 94.2 0.027 9.2E-07 54.1 3.5 24 138-161 3-26 (409)
279 1oix_A RAS-related protein RAB 94.2 0.027 9.1E-07 48.3 3.2 24 137-160 29-52 (191)
280 1tf7_A KAIC; homohexamer, hexa 94.1 0.064 2.2E-06 54.0 6.3 38 125-162 269-306 (525)
281 2dyk_A GTP-binding protein; GT 94.1 0.033 1.1E-06 45.8 3.5 23 138-160 2-24 (161)
282 2cbz_A Multidrug resistance-as 94.1 0.025 8.4E-07 50.6 2.8 24 138-161 32-55 (237)
283 2v3c_C SRP54, signal recogniti 94.1 0.027 9.4E-07 55.0 3.4 27 137-163 99-125 (432)
284 2wji_A Ferrous iron transport 94.0 0.034 1.2E-06 46.3 3.5 23 138-160 4-26 (165)
285 3gfo_A Cobalt import ATP-bindi 94.0 0.025 8.6E-07 51.7 2.8 24 138-161 35-58 (275)
286 1nlf_A Regulatory protein REPA 94.0 0.027 9.4E-07 51.6 3.1 26 137-162 30-55 (279)
287 1b0u_A Histidine permease; ABC 94.0 0.025 8.7E-07 51.3 2.8 35 137-172 32-66 (262)
288 2orw_A Thymidine kinase; TMTK, 94.0 0.03 1E-06 47.9 3.1 24 138-161 4-27 (184)
289 3fdi_A Uncharacterized protein 93.9 0.036 1.2E-06 48.1 3.6 26 138-163 7-32 (201)
290 2d2e_A SUFC protein; ABC-ATPas 93.9 0.03 1E-06 50.5 3.1 23 138-160 30-52 (250)
291 1cp2_A CP2, nitrogenase iron p 93.9 0.042 1.4E-06 49.9 4.2 35 138-172 2-36 (269)
292 4g1u_C Hemin import ATP-bindin 93.9 0.027 9.2E-07 51.3 2.8 33 138-171 38-70 (266)
293 2zej_A Dardarin, leucine-rich 93.9 0.025 8.4E-07 48.1 2.4 21 139-159 4-24 (184)
294 1ji0_A ABC transporter; ATP bi 93.9 0.028 9.4E-07 50.4 2.8 34 138-172 33-66 (240)
295 4edh_A DTMP kinase, thymidylat 93.9 0.075 2.5E-06 46.5 5.5 28 137-164 6-33 (213)
296 2og2_A Putative signal recogni 93.9 0.035 1.2E-06 52.7 3.6 27 137-163 157-183 (359)
297 1g6h_A High-affinity branched- 93.9 0.028 9.5E-07 50.9 2.8 34 138-172 34-67 (257)
298 2ocp_A DGK, deoxyguanosine kin 93.8 0.038 1.3E-06 49.4 3.6 25 138-162 3-27 (241)
299 2f9l_A RAB11B, member RAS onco 93.8 0.034 1.2E-06 47.9 3.2 24 137-160 5-28 (199)
300 3end_A Light-independent proto 93.8 0.038 1.3E-06 51.4 3.7 37 136-172 40-76 (307)
301 2olj_A Amino acid ABC transpor 93.8 0.029 9.9E-07 51.0 2.8 35 137-172 50-84 (263)
302 1sgw_A Putative ABC transporte 93.8 0.024 8.3E-07 49.7 2.2 24 138-161 36-59 (214)
303 2zu0_C Probable ATP-dependent 93.8 0.032 1.1E-06 50.8 3.1 35 138-172 47-82 (267)
304 1mv5_A LMRA, multidrug resista 93.8 0.032 1.1E-06 50.0 3.0 25 137-161 28-52 (243)
305 2ff7_A Alpha-hemolysin translo 93.8 0.03 1E-06 50.4 2.8 34 138-172 36-69 (247)
306 2pze_A Cystic fibrosis transme 93.8 0.03 1E-06 49.7 2.8 24 138-161 35-58 (229)
307 4hlc_A DTMP kinase, thymidylat 93.8 0.16 5.6E-06 44.0 7.5 29 138-166 3-31 (205)
308 2ck3_D ATP synthase subunit be 93.7 0.23 7.7E-06 48.7 9.1 26 138-163 154-179 (482)
309 1vpl_A ABC transporter, ATP-bi 93.7 0.031 1.1E-06 50.6 2.8 33 138-171 42-74 (256)
310 2v9p_A Replication protein E1; 93.7 0.036 1.2E-06 51.4 3.3 25 137-161 126-150 (305)
311 2ged_A SR-beta, signal recogni 93.7 0.043 1.5E-06 46.8 3.6 24 137-160 48-71 (193)
312 2p67_A LAO/AO transport system 93.7 0.058 2E-06 51.0 4.8 27 135-161 54-80 (341)
313 3cr8_A Sulfate adenylyltranfer 93.7 0.044 1.5E-06 55.3 4.1 27 137-163 369-395 (552)
314 3upu_A ATP-dependent DNA helic 93.6 0.055 1.9E-06 53.4 4.7 26 138-163 46-71 (459)
315 2ghi_A Transport protein; mult 93.6 0.033 1.1E-06 50.5 2.8 33 138-172 47-79 (260)
316 3f9v_A Minichromosome maintena 93.6 0.026 8.9E-07 57.7 2.4 49 113-161 294-351 (595)
317 2afh_E Nitrogenase iron protei 93.6 0.043 1.5E-06 50.5 3.7 27 137-163 2-28 (289)
318 2h92_A Cytidylate kinase; ross 93.6 0.036 1.2E-06 48.6 3.0 24 138-161 4-27 (219)
319 2ixe_A Antigen peptide transpo 93.6 0.033 1.1E-06 50.8 2.8 34 137-171 45-78 (271)
320 2yhs_A FTSY, cell division pro 93.6 0.04 1.4E-06 54.4 3.5 35 136-171 292-326 (503)
321 3gmt_A Adenylate kinase; ssgci 93.6 0.04 1.4E-06 48.7 3.2 24 138-161 9-32 (230)
322 2wjg_A FEOB, ferrous iron tran 93.6 0.047 1.6E-06 46.2 3.7 24 137-160 7-30 (188)
323 3io3_A DEHA2D07832P; chaperone 93.6 0.055 1.9E-06 51.2 4.4 37 136-172 17-55 (348)
324 3tqf_A HPR(Ser) kinase; transf 93.5 0.05 1.7E-06 45.6 3.5 23 138-160 17-39 (181)
325 4gzl_A RAS-related C3 botulinu 93.5 0.044 1.5E-06 47.4 3.4 24 137-160 30-53 (204)
326 2nq2_C Hypothetical ABC transp 93.5 0.036 1.2E-06 50.1 2.9 23 138-160 32-54 (253)
327 2yz2_A Putative ABC transporte 93.5 0.035 1.2E-06 50.5 2.8 24 138-161 34-57 (266)
328 2ihy_A ABC transporter, ATP-bi 93.5 0.035 1.2E-06 50.9 2.8 33 138-171 48-80 (279)
329 1z2a_A RAS-related protein RAB 93.4 0.054 1.8E-06 44.7 3.7 24 137-160 5-28 (168)
330 1fx0_B ATP synthase beta chain 93.4 0.081 2.8E-06 52.0 5.4 35 137-171 165-200 (498)
331 3ld9_A DTMP kinase, thymidylat 93.4 0.087 3E-06 46.4 5.2 28 136-163 20-47 (223)
332 2ce2_X GTPase HRAS; signaling 93.4 0.042 1.4E-06 45.1 3.0 22 139-160 5-26 (166)
333 2nzj_A GTP-binding protein REM 93.4 0.053 1.8E-06 45.1 3.7 24 137-160 4-27 (175)
334 3iqw_A Tail-anchored protein t 93.4 0.069 2.4E-06 50.3 4.7 37 136-172 15-51 (334)
335 2qm8_A GTPase/ATPase; G protei 93.4 0.066 2.3E-06 50.5 4.6 26 136-161 54-79 (337)
336 1fzq_A ADP-ribosylation factor 93.4 0.068 2.3E-06 45.2 4.3 25 136-160 15-39 (181)
337 1tq4_A IIGP1, interferon-induc 93.3 0.036 1.2E-06 53.8 2.7 25 136-160 68-92 (413)
338 2vp4_A Deoxynucleoside kinase; 93.3 0.04 1.4E-06 48.8 2.8 25 136-160 19-43 (230)
339 4akg_A Glutathione S-transfera 93.3 0.27 9.1E-06 58.5 10.2 130 140-297 1270-1452(2695)
340 2axn_A 6-phosphofructo-2-kinas 93.3 0.052 1.8E-06 54.5 3.9 26 137-162 35-60 (520)
341 3kjh_A CO dehydrogenase/acetyl 93.3 0.063 2.2E-06 47.9 4.1 33 140-172 3-35 (254)
342 1nij_A Hypothetical protein YJ 93.3 0.063 2.2E-06 50.2 4.2 26 136-161 3-28 (318)
343 1m8p_A Sulfate adenylyltransfe 93.2 0.09 3.1E-06 53.4 5.6 27 136-162 395-421 (573)
344 3sop_A Neuronal-specific septi 93.2 0.048 1.7E-06 49.7 3.3 23 139-161 4-26 (270)
345 1p5z_B DCK, deoxycytidine kina 93.2 0.035 1.2E-06 50.3 2.3 26 137-162 24-49 (263)
346 3kta_A Chromosome segregation 93.1 0.051 1.7E-06 46.0 3.1 23 139-161 28-50 (182)
347 3hjn_A DTMP kinase, thymidylat 93.1 0.074 2.5E-06 45.9 4.1 27 139-165 2-28 (197)
348 3lv8_A DTMP kinase, thymidylat 93.1 0.083 2.8E-06 47.0 4.5 27 137-163 27-53 (236)
349 3con_A GTPase NRAS; structural 93.1 0.049 1.7E-06 46.2 3.0 23 138-160 22-44 (190)
350 1u8z_A RAS-related protein RAL 93.1 0.074 2.5E-06 43.7 4.0 24 137-160 4-27 (168)
351 2gj8_A MNME, tRNA modification 93.1 0.049 1.7E-06 45.7 2.9 23 138-160 5-27 (172)
352 3zq6_A Putative arsenical pump 93.1 0.082 2.8E-06 49.6 4.7 36 137-172 14-49 (324)
353 1svi_A GTP-binding protein YSX 93.0 0.059 2E-06 45.9 3.5 25 136-160 22-46 (195)
354 2pjz_A Hypothetical protein ST 93.0 0.047 1.6E-06 49.6 2.8 32 138-171 31-62 (263)
355 1kao_A RAP2A; GTP-binding prot 93.0 0.053 1.8E-06 44.6 3.0 23 138-160 4-26 (167)
356 2fn4_A P23, RAS-related protei 93.0 0.079 2.7E-06 44.3 4.1 25 136-160 8-32 (181)
357 2lkc_A Translation initiation 93.0 0.058 2E-06 45.1 3.3 25 136-160 7-31 (178)
358 3ea0_A ATPase, para family; al 93.0 0.087 3E-06 46.9 4.6 36 137-172 4-41 (245)
359 1m7b_A RND3/RHOE small GTP-bin 93.0 0.053 1.8E-06 45.9 3.0 24 137-160 7-30 (184)
360 1c1y_A RAS-related protein RAP 92.9 0.055 1.9E-06 44.6 3.0 22 139-160 5-26 (167)
361 3v9p_A DTMP kinase, thymidylat 92.9 0.08 2.7E-06 46.8 4.2 28 137-164 25-52 (227)
362 1nrj_B SR-beta, signal recogni 92.9 0.06 2.1E-06 46.9 3.4 25 136-160 11-35 (218)
363 2erx_A GTP-binding protein DI- 92.9 0.054 1.8E-06 44.9 2.9 23 138-160 4-26 (172)
364 1z08_A RAS-related protein RAB 92.9 0.056 1.9E-06 44.8 3.0 24 137-160 6-29 (170)
365 1z0j_A RAB-22, RAS-related pro 92.9 0.055 1.9E-06 44.7 2.9 23 138-160 7-29 (170)
366 3t1o_A Gliding protein MGLA; G 92.9 0.066 2.3E-06 45.5 3.5 26 137-162 14-39 (198)
367 4b3f_X DNA-binding protein smu 92.8 0.47 1.6E-05 49.0 10.5 37 120-160 192-228 (646)
368 1r8s_A ADP-ribosylation factor 92.8 0.059 2E-06 44.3 3.1 22 139-160 2-23 (164)
369 3fvq_A Fe(3+) IONS import ATP- 92.8 0.055 1.9E-06 51.4 3.1 22 138-159 31-52 (359)
370 3q72_A GTP-binding protein RAD 92.8 0.052 1.8E-06 44.8 2.7 21 139-159 4-24 (166)
371 3hdt_A Putative kinase; struct 92.8 0.07 2.4E-06 47.1 3.7 26 137-162 14-39 (223)
372 3ug7_A Arsenical pump-driving 92.8 0.092 3.2E-06 49.8 4.7 38 135-172 24-61 (349)
373 3q85_A GTP-binding protein REM 92.8 0.074 2.5E-06 44.0 3.6 22 138-159 3-24 (169)
374 2gks_A Bifunctional SAT/APS ki 92.8 0.088 3E-06 53.1 4.8 41 122-162 357-397 (546)
375 1ek0_A Protein (GTP-binding pr 92.8 0.059 2E-06 44.5 3.0 22 139-160 5-26 (170)
376 3ihw_A Centg3; RAS, centaurin, 92.8 0.058 2E-06 45.8 3.0 24 137-160 20-43 (184)
377 1jr3_D DNA polymerase III, del 92.8 1.1 3.7E-05 42.0 12.2 143 137-307 18-184 (343)
378 2hxs_A RAB-26, RAS-related pro 92.8 0.063 2.2E-06 44.9 3.2 24 137-160 6-29 (178)
379 3def_A T7I23.11 protein; chlor 92.7 0.11 3.7E-06 47.0 4.9 36 125-160 24-59 (262)
380 2www_A Methylmalonic aciduria 92.7 0.068 2.3E-06 50.7 3.7 26 136-161 73-98 (349)
381 2qe7_A ATP synthase subunit al 92.7 0.092 3.1E-06 51.7 4.6 24 138-161 163-187 (502)
382 3pqc_A Probable GTP-binding pr 92.7 0.071 2.4E-06 45.3 3.4 24 137-160 23-46 (195)
383 3nh6_A ATP-binding cassette SU 92.7 0.043 1.5E-06 51.0 2.1 25 137-161 80-104 (306)
384 1ky3_A GTP-binding protein YPT 92.7 0.081 2.8E-06 44.3 3.7 25 136-160 7-31 (182)
385 2iwr_A Centaurin gamma 1; ANK 92.6 0.054 1.9E-06 45.4 2.6 23 138-160 8-30 (178)
386 2bbs_A Cystic fibrosis transme 92.6 0.056 1.9E-06 49.8 2.8 25 137-161 64-88 (290)
387 3tw8_B RAS-related protein RAB 92.6 0.074 2.5E-06 44.5 3.4 25 136-160 8-32 (181)
388 1wms_A RAB-9, RAB9, RAS-relate 92.6 0.064 2.2E-06 44.8 3.0 24 137-160 7-30 (177)
389 3c5c_A RAS-like protein 12; GD 92.6 0.064 2.2E-06 45.6 3.0 24 137-160 21-44 (187)
390 1m2o_B GTP-binding protein SAR 92.6 0.063 2.2E-06 45.8 3.0 23 138-160 24-46 (190)
391 1r2q_A RAS-related protein RAB 92.6 0.065 2.2E-06 44.2 3.0 23 138-160 7-29 (170)
392 3tui_C Methionine import ATP-b 92.6 0.063 2.1E-06 51.0 3.1 24 137-160 54-77 (366)
393 2yv5_A YJEQ protein; hydrolase 92.5 0.1 3.4E-06 48.4 4.5 33 123-161 156-188 (302)
394 2cxx_A Probable GTP-binding pr 92.5 0.061 2.1E-06 45.5 2.8 22 139-160 3-24 (190)
395 2gk6_A Regulator of nonsense t 92.5 0.29 1E-05 50.3 8.3 38 120-162 183-220 (624)
396 1z47_A CYSA, putative ABC-tran 92.5 0.065 2.2E-06 50.8 3.1 23 138-160 42-64 (355)
397 4dzz_A Plasmid partitioning pr 92.5 0.082 2.8E-06 45.6 3.7 35 138-172 2-37 (206)
398 1bif_A 6-phosphofructo-2-kinas 92.4 0.076 2.6E-06 52.6 3.7 26 137-162 39-64 (469)
399 3kkq_A RAS-related protein M-R 92.4 0.068 2.3E-06 45.0 2.9 24 137-160 18-41 (183)
400 1h65_A Chloroplast outer envel 92.4 0.13 4.3E-06 46.8 4.9 26 135-160 37-62 (270)
401 2cjw_A GTP-binding protein GEM 92.4 0.068 2.3E-06 45.8 2.9 23 137-159 6-28 (192)
402 3rlf_A Maltose/maltodextrin im 92.4 0.068 2.3E-06 51.1 3.1 22 138-159 30-51 (381)
403 1lw7_A Transcriptional regulat 92.4 0.066 2.3E-06 51.1 3.1 26 137-162 170-195 (365)
404 2yyz_A Sugar ABC transporter, 92.3 0.07 2.4E-06 50.7 3.1 23 138-160 30-52 (359)
405 1x6v_B Bifunctional 3'-phospho 92.3 0.085 2.9E-06 53.8 3.9 26 136-161 51-76 (630)
406 4tmk_A Protein (thymidylate ki 92.3 0.13 4.5E-06 44.9 4.7 26 138-163 4-29 (213)
407 1g16_A RAS-related protein SEC 92.3 0.097 3.3E-06 43.2 3.7 23 138-160 4-26 (170)
408 2fz4_A DNA repair protein RAD2 92.3 0.33 1.1E-05 43.0 7.5 39 118-161 94-132 (237)
409 3bc1_A RAS-related protein RAB 92.3 0.073 2.5E-06 45.1 3.0 24 137-160 11-34 (195)
410 4dsu_A GTPase KRAS, isoform 2B 92.3 0.074 2.5E-06 44.9 3.0 23 138-160 5-27 (189)
411 2it1_A 362AA long hypothetical 92.2 0.072 2.5E-06 50.7 3.1 24 137-160 29-52 (362)
412 1z0f_A RAB14, member RAS oncog 92.2 0.1 3.4E-06 43.5 3.8 24 137-160 15-38 (179)
413 2oil_A CATX-8, RAS-related pro 92.2 0.075 2.5E-06 45.3 3.0 24 137-160 25-48 (193)
414 2r9v_A ATP synthase subunit al 92.2 0.15 5.2E-06 50.2 5.4 24 138-161 176-200 (515)
415 1upt_A ARL1, ADP-ribosylation 92.2 0.099 3.4E-06 43.2 3.7 24 137-160 7-30 (171)
416 3vkw_A Replicase large subunit 92.2 0.44 1.5E-05 46.4 8.6 39 121-159 142-183 (446)
417 1g29_1 MALK, maltose transport 92.2 0.074 2.5E-06 50.8 3.1 23 138-160 30-52 (372)
418 2y8e_A RAB-protein 6, GH09086P 92.2 0.078 2.7E-06 44.2 3.0 23 138-160 15-37 (179)
419 3t5g_A GTP-binding protein RHE 92.2 0.087 3E-06 44.2 3.3 23 137-159 6-28 (181)
420 1f6b_A SAR1; gtpases, N-termin 92.2 0.066 2.3E-06 46.1 2.6 22 138-159 26-47 (198)
421 3bwd_D RAC-like GTP-binding pr 92.1 0.079 2.7E-06 44.4 3.0 23 138-160 9-31 (182)
422 1v43_A Sugar-binding transport 92.1 0.076 2.6E-06 50.7 3.1 23 137-159 37-59 (372)
423 2atv_A RERG, RAS-like estrogen 92.1 0.079 2.7E-06 45.3 3.0 24 137-160 28-51 (196)
424 2bme_A RAB4A, RAS-related prot 92.1 0.11 3.6E-06 43.8 3.8 24 137-160 10-33 (186)
425 2a9k_A RAS-related protein RAL 92.1 0.081 2.8E-06 44.5 3.0 24 137-160 18-41 (187)
426 1mh1_A RAC1; GTP-binding, GTPa 92.0 0.11 3.8E-06 43.6 3.8 23 138-160 6-28 (186)
427 1gwn_A RHO-related GTP-binding 92.0 0.08 2.7E-06 45.9 3.0 24 137-160 28-51 (205)
428 2efe_B Small GTP-binding prote 92.0 0.082 2.8E-06 44.3 3.0 24 137-160 12-35 (181)
429 3dz8_A RAS-related protein RAB 92.0 0.083 2.9E-06 44.9 3.0 23 138-160 24-46 (191)
430 1p9r_A General secretion pathw 92.0 0.12 4E-06 50.3 4.4 28 137-164 167-194 (418)
431 2ew1_A RAS-related protein RAB 92.0 0.082 2.8E-06 45.7 3.0 24 137-160 26-49 (201)
432 3llu_A RAS-related GTP-binding 92.0 0.078 2.7E-06 45.4 2.8 24 137-160 20-43 (196)
433 1vg8_A RAS-related protein RAB 92.0 0.11 3.6E-06 44.8 3.7 25 136-160 7-31 (207)
434 2g6b_A RAS-related protein RAB 92.0 0.085 2.9E-06 44.1 3.0 24 137-160 10-33 (180)
435 3d31_A Sulfate/molybdate ABC t 92.0 0.064 2.2E-06 50.7 2.4 23 138-160 27-49 (348)
436 2obl_A ESCN; ATPase, hydrolase 91.9 0.23 7.8E-06 47.0 6.2 26 138-163 72-97 (347)
437 3cbq_A GTP-binding protein REM 91.9 0.084 2.9E-06 45.3 3.0 23 137-159 23-45 (195)
438 1pui_A ENGB, probable GTP-bind 91.9 0.055 1.9E-06 46.8 1.8 24 137-160 26-49 (210)
439 3oes_A GTPase rhebl1; small GT 91.9 0.085 2.9E-06 45.3 3.0 24 137-160 24-47 (201)
440 3clv_A RAB5 protein, putative; 91.9 0.086 2.9E-06 45.0 3.0 24 137-160 7-30 (208)
441 4bas_A ADP-ribosylation factor 91.9 0.089 3E-06 44.9 3.1 25 136-160 16-40 (199)
442 2fg5_A RAB-22B, RAS-related pr 91.8 0.088 3E-06 44.9 3.0 24 137-160 23-46 (192)
443 3lxx_A GTPase IMAP family memb 91.8 0.11 3.7E-06 46.2 3.7 25 136-160 28-52 (239)
444 1zd9_A ADP-ribosylation factor 91.8 0.09 3.1E-06 44.6 3.0 24 137-160 22-45 (188)
445 2bov_A RAla, RAS-related prote 91.8 0.13 4.3E-06 44.2 4.0 24 137-160 14-37 (206)
446 2fh5_B SR-beta, signal recogni 91.8 0.089 3E-06 45.6 3.0 24 137-160 7-30 (214)
447 1ega_A Protein (GTP-binding pr 91.8 0.1 3.6E-06 48.3 3.6 24 137-160 8-31 (301)
448 2g3y_A GTP-binding protein GEM 91.8 0.087 3E-06 46.0 2.9 23 137-159 37-59 (211)
449 1zbd_A Rabphilin-3A; G protein 91.8 0.088 3E-06 45.2 2.9 24 137-160 8-31 (203)
450 3reg_A RHO-like small GTPase; 91.7 0.092 3.1E-06 44.8 3.0 24 137-160 23-46 (194)
451 1oxx_K GLCV, glucose, ABC tran 91.7 0.061 2.1E-06 51.1 1.9 22 138-159 32-53 (353)
452 2gf9_A RAS-related protein RAB 91.7 0.094 3.2E-06 44.5 3.0 24 137-160 22-45 (189)
453 3gd7_A Fusion complex of cysti 91.7 0.09 3.1E-06 50.5 3.1 24 137-160 47-70 (390)
454 2qnr_A Septin-2, protein NEDD5 91.7 0.08 2.7E-06 49.1 2.7 21 139-159 20-40 (301)
455 3fkq_A NTRC-like two-domain pr 91.7 0.12 4.1E-06 49.5 4.0 38 135-172 141-179 (373)
456 2a5j_A RAS-related protein RAB 91.7 0.094 3.2E-06 44.6 3.0 24 137-160 21-44 (191)
457 2qu8_A Putative nucleolar GTP- 91.6 0.11 3.8E-06 45.7 3.5 25 136-160 28-52 (228)
458 1moz_A ARL1, ADP-ribosylation 91.6 0.16 5.4E-06 42.6 4.3 24 136-159 17-40 (183)
459 3tmk_A Thymidylate kinase; pho 91.6 0.12 4.2E-06 45.2 3.6 27 137-163 5-31 (216)
460 2gza_A Type IV secretion syste 91.6 0.08 2.7E-06 50.5 2.6 34 138-172 176-209 (361)
461 2p5s_A RAS and EF-hand domain 91.6 0.098 3.4E-06 44.8 3.0 24 137-160 28-51 (199)
462 2h17_A ADP-ribosylation factor 91.5 0.092 3.2E-06 44.2 2.8 24 137-160 21-44 (181)
463 1z06_A RAS-related protein RAB 91.5 0.099 3.4E-06 44.3 3.0 24 137-160 20-43 (189)
464 3tkl_A RAS-related protein RAB 91.5 0.14 4.6E-06 43.6 3.8 24 137-160 16-39 (196)
465 4dkx_A RAS-related protein RAB 91.5 0.099 3.4E-06 45.8 3.0 22 139-160 15-36 (216)
466 1ksh_A ARF-like protein 2; sma 91.5 0.088 3E-06 44.4 2.6 25 136-160 17-41 (186)
467 2q3h_A RAS homolog gene family 91.5 0.094 3.2E-06 44.9 2.8 24 137-160 20-43 (201)
468 1zj6_A ADP-ribosylation factor 91.5 0.1 3.4E-06 44.2 2.9 25 136-160 15-39 (187)
469 2o52_A RAS-related protein RAB 91.5 0.094 3.2E-06 45.1 2.8 24 137-160 25-48 (200)
470 1x3s_A RAS-related protein RAB 91.4 0.1 3.6E-06 44.2 3.0 23 138-160 16-38 (195)
471 3vr4_D V-type sodium ATPase su 91.4 0.031 1E-06 54.5 -0.5 26 138-163 152-177 (465)
472 1f2t_A RAD50 ABC-ATPase; DNA d 91.4 0.13 4.4E-06 42.2 3.4 22 138-159 24-45 (149)
473 3ch4_B Pmkase, phosphomevalona 91.4 0.15 5E-06 44.0 3.8 25 137-161 11-35 (202)
474 3k53_A Ferrous iron transport 91.4 0.12 4E-06 47.0 3.4 24 137-160 3-26 (271)
475 2gf0_A GTP-binding protein DI- 91.3 0.15 5E-06 43.5 3.9 24 137-160 8-31 (199)
476 2bcg_Y Protein YP2, GTP-bindin 91.3 0.11 3.6E-06 44.8 3.0 24 137-160 8-31 (206)
477 2b6h_A ADP-ribosylation factor 91.3 0.1 3.4E-06 44.6 2.7 23 137-159 29-51 (192)
478 1c9k_A COBU, adenosylcobinamid 91.3 0.091 3.1E-06 44.5 2.4 21 140-160 2-22 (180)
479 2woj_A ATPase GET3; tail-ancho 91.3 0.21 7.2E-06 47.4 5.2 36 137-172 18-55 (354)
480 2j1l_A RHO-related GTP-binding 91.3 0.1 3.4E-06 45.5 2.8 24 137-160 34-57 (214)
481 3cio_A ETK, tyrosine-protein k 91.2 0.19 6.4E-06 46.5 4.7 38 135-172 102-140 (299)
482 2atx_A Small GTP binding prote 91.2 0.11 3.8E-06 44.2 3.0 24 137-160 18-41 (194)
483 3bfv_A CAPA1, CAPB2, membrane 91.2 0.19 6.6E-06 45.7 4.7 51 122-172 65-118 (271)
484 2rcn_A Probable GTPase ENGC; Y 91.2 0.11 3.8E-06 49.2 3.1 24 138-161 216-239 (358)
485 2fv8_A H6, RHO-related GTP-bin 91.2 0.11 3.8E-06 44.8 3.0 24 137-160 25-48 (207)
486 2j0v_A RAC-like GTP-binding pr 91.2 0.11 3.8E-06 44.9 3.0 24 137-160 9-32 (212)
487 1jwy_B Dynamin A GTPase domain 91.2 0.12 4.1E-06 48.0 3.4 25 136-160 23-47 (315)
488 4i1u_A Dephospho-COA kinase; s 91.1 0.13 4.4E-06 44.8 3.2 23 137-159 9-31 (210)
489 2hup_A RAS-related protein RAB 91.1 0.12 4E-06 44.5 3.0 24 137-160 29-52 (201)
490 2qag_B Septin-6, protein NEDD5 91.0 0.17 5.7E-06 49.1 4.3 36 123-160 30-65 (427)
491 2gco_A H9, RHO-related GTP-bin 91.0 0.12 4.1E-06 44.4 3.0 24 137-160 25-48 (201)
492 3cph_A RAS-related protein SEC 91.0 0.12 4.1E-06 44.6 3.0 24 137-160 20-43 (213)
493 2woo_A ATPase GET3; tail-ancho 91.0 0.2 6.8E-06 47.0 4.7 37 136-172 18-54 (329)
494 3iev_A GTP-binding protein ERA 90.9 0.14 4.8E-06 47.5 3.5 25 136-160 9-33 (308)
495 1u0l_A Probable GTPase ENGC; p 90.8 0.18 6.3E-06 46.6 4.3 34 123-161 160-193 (301)
496 3q3j_B RHO-related GTP-binding 90.8 0.13 4.3E-06 44.9 3.0 23 138-160 28-50 (214)
497 2il1_A RAB12; G-protein, GDP, 90.8 0.12 4.1E-06 44.1 2.8 24 137-160 26-49 (192)
498 2fu5_C RAS-related protein RAB 90.8 0.074 2.5E-06 44.8 1.4 24 137-160 8-31 (183)
499 2oze_A ORF delta'; para, walke 90.8 0.11 3.7E-06 47.9 2.7 48 122-172 22-72 (298)
500 2h57_A ADP-ribosylation factor 90.8 0.09 3.1E-06 44.6 1.9 23 138-160 22-44 (190)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=100.00 E-value=8.3e-43 Score=358.27 Aligned_cols=290 Identities=16% Similarity=0.095 Sum_probs=221.3
Q ss_pred cccchhHHHHHhhhccC-CCCeEEEEEEccCCCchhHHHHHHHh----hccCccccceeeehhhhhhcc--CCHHHHHHH
Q 045345 117 VGMDSCWNTLRFLMDKE-PYGVRMIGICGMGGIGKTTLARVVYD----LSSHEFEASSFLANVREISEK--GGLICLQKQ 189 (445)
Q Consensus 117 vGr~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~----~~~~~f~~~~~~~~~~~~~~~--~~~~~l~~~ 189 (445)
|||+.++++|.++|... ..+.++|+|+|||||||||||+++|+ ++..+|+.++|+. ++.. .+...++..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~ 206 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTD 206 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHH
Confidence 49999999999999754 34579999999999999999999996 6889999999996 4443 367889999
Q ss_pred HHHHHhCCCC------CCCcChhhhHHHHHHHHccC-cEEEEEcCCCCHHHHHHhcCCCCCcCcccccccCC--------
Q 045345 190 LLSELLKLPD------TSTWNVYDGLKMIGSRLRYR-KVLLIVDAAFDLKQLESLAGKHEWFDEHLLMTHGV-------- 254 (445)
Q Consensus 190 il~~l~~~~~------~~~~~~~~~~~~l~~~l~~~-~~LlVlDdv~~~~~l~~l~~~~~~~~~~vl~t~~~-------- 254 (445)
++..++.... ....+.......+++.|+++ |+||||||||+.+++ .+... . +.+|++|++.
T Consensus 207 il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~~-~--gs~ilvTTR~~~v~~~~~ 282 (549)
T 2a5y_B 207 ILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQE-L--RLRCLVTTRDVEISNAAS 282 (549)
T ss_dssp HHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHHH-T--TCEEEEEESBGGGGGGCC
T ss_pred HHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-ccccc-C--CCEEEEEcCCHHHHHHcC
Confidence 9999875422 11223344578899999996 999999999998876 33221 1 4556666542
Q ss_pred --CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHH-HhcCCc
Q 045345 255 --DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKR-LERESE 331 (445)
Q Consensus 255 --~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~-l~~~~~ 331 (445)
..+|+|++|+.++|++||.++++.... .+.+.+++.+|+++|+|+||||+++|+.|+.++. +|...+.. +.....
T Consensus 283 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w-~~~~~l~~~l~~~~~ 360 (549)
T 2a5y_B 283 QTCEFIEVTSLEIDECYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTF-EKMAQLNNKLESRGL 360 (549)
T ss_dssp SCEEEEECCCCCHHHHHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSH-HHHHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCHHHHHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchH-HHHHHhHHHhhcccH
Confidence 246999999999999999999876543 3577889999999999999999999999987753 33333322 222234
Q ss_pred hhHHHHHHHhhcCCcHhHHHHHh-----------hhhccCCCCCHHHHHHHHHhC--CCCc-----------hhcHHHHh
Q 045345 332 NEILDILKISFDGLRETEKKIFL-----------DIACFYRGEDRDYVTKIIDYC--DFDP-----------VIGIRVLI 387 (445)
Q Consensus 332 ~~i~~~l~~s~~~L~~~~k~~~~-----------~la~f~~~~~~~~l~~~~~~~--~~~~-----------~~~l~~L~ 387 (445)
..+..++..||+.||+..+.||+ +||+||.+.+.+ ..+|.++ |+.. ..++++|+
T Consensus 361 ~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~ 438 (549)
T 2a5y_B 361 VGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLS 438 (549)
T ss_dssp STTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTT
T ss_pred HHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHH
Confidence 55777788888888888888888 999999887666 5677776 4432 23699999
Q ss_pred hcCceEEcc---CCeEEccHHHHHHHHHHHhhcC
Q 045345 388 DKSLIEISN---GNRLRMHNLLQEMGQQIVKRQS 418 (445)
Q Consensus 388 ~~sLi~~~~---~~~~~mHdlvr~~ar~~~~~e~ 418 (445)
++|||+... ..+|+|||+||+||++++.+++
T Consensus 439 ~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 439 KRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp TBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred HcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 999998654 3479999999999998776553
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=3.1e-38 Score=354.54 Aligned_cols=298 Identities=17% Similarity=0.217 Sum_probs=234.6
Q ss_pred CccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh---ccCccccce-eeehhhhhhccCCHH
Q 045345 109 KSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL---SSHEFEASS-FLANVREISEKGGLI 184 (445)
Q Consensus 109 ~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~f~~~~-~~~~~~~~~~~~~~~ 184 (445)
.|..+..||||+.++++|.++|....++.++|+|+||||+||||||++++++ ...+|+..+ |+. +.... .....
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~ 196 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLL 196 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHH
Confidence 3345678999999999999999766667899999999999999999999987 356677665 555 22211 22334
Q ss_pred HHHHHHHHHHhCCCC---CCCcChhhhHHHHHHHHccC--cEEEEEcCCCCHHHHHHhcCCCCCcCcccccccCC-----
Q 045345 185 CLQKQLLSELLKLPD---TSTWNVYDGLKMIGSRLRYR--KVLLIVDAAFDLKQLESLAGKHEWFDEHLLMTHGV----- 254 (445)
Q Consensus 185 ~l~~~il~~l~~~~~---~~~~~~~~~~~~l~~~l~~~--~~LlVlDdv~~~~~l~~l~~~~~~~~~~vl~t~~~----- 254 (445)
..+..++..+..... ....+.+.....++..+.++ |+||||||||+..+++.+.+ +.++++|++.
T Consensus 197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~-----~~~ilvTtR~~~~~~ 271 (1249)
T 3sfz_A 197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDN-----QCQILLTTRDKSVTD 271 (1249)
T ss_dssp HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCS-----SCEEEEEESSTTTTT
T ss_pred HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcC-----CCEEEEEcCCHHHHH
Confidence 445566666654322 22345666777788888776 99999999999998887632 3456666553
Q ss_pred -----CceEEcCC-CCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHHHhc
Q 045345 255 -----DEVHKLKV-LHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKRLER 328 (445)
Q Consensus 255 -----~~~~~l~~-L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~ 328 (445)
...+++++ |+.+||++||...++.. .+.+.+.+.+|+++|+|+||||+++|++|+.++ ..|..+++.+..
T Consensus 272 ~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~ 347 (1249)
T 3sfz_A 272 SVMGPKHVVPVESGLGREKGLEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQN 347 (1249)
T ss_dssp TCCSCBCCEECCSSCCHHHHHHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHS
T ss_pred hhcCCceEEEecCCCCHHHHHHHHHHhhCCC---hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhh
Confidence 25688886 99999999999888433 223446689999999999999999999998766 579999988865
Q ss_pred CC-----------chhHHHHHHHhhcCCcHhHHHHHhhhhccCCC--CCHHHHHHHHHhCCCCchhcHHHHhhcCceEEc
Q 045345 329 ES-----------ENEILDILKISFDGLRETEKKIFLDIACFYRG--EDRDYVTKIIDYCDFDPVIGIRVLIDKSLIEIS 395 (445)
Q Consensus 329 ~~-----------~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~ 395 (445)
.. ...+..+|..||+.|++++|.||++||+||++ ++.+.+..+|..++......++.|+++|||+..
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~ 427 (1249)
T 3sfz_A 348 KQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCN 427 (1249)
T ss_dssp CCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEE
T ss_pred hhhhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEe
Confidence 33 15699999999999999999999999999987 678899999987777778899999999999987
Q ss_pred cCCe---EEccHHHHHHHHHHHhhc
Q 045345 396 NGNR---LRMHNLLQEMGQQIVKRQ 417 (445)
Q Consensus 396 ~~~~---~~mHdlvr~~ar~~~~~e 417 (445)
.++. |+||++||+|+++.+.++
T Consensus 428 ~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 428 RNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp ESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred cCCCceEEEecHHHHHHHHhhhhHH
Confidence 6664 999999999999986654
No 3
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=314.08 Aligned_cols=321 Identities=17% Similarity=0.202 Sum_probs=236.8
Q ss_pred ccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc---cCccc-cceeeehhhhhhccCCHHH
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS---SHEFE-ASSFLANVREISEKGGLIC 185 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~-~~~~~~~~~~~~~~~~~~~ 185 (445)
|..+..||||+.+++.|.+.|....++.++|+|+||||+||||||.+++++. ..+|+ .++|+. +.... ...+..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~-~~~~~-~~~~~~ 197 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVS-VGKQD-KSGLLM 197 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEE-EESCC-HHHHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEE-CCCCc-hHHHHH
Confidence 3456789999999999999998655568999999999999999999999864 67786 567765 22111 111222
Q ss_pred HHHHHHHHHhCCC---CCCCcChhhhHHHHHHHHcc--CcEEEEEcCCCCHHHHHHhcCCCCCcCcccccccCC------
Q 045345 186 LQKQLLSELLKLP---DTSTWNVYDGLKMIGSRLRY--RKVLLIVDAAFDLKQLESLAGKHEWFDEHLLMTHGV------ 254 (445)
Q Consensus 186 l~~~il~~l~~~~---~~~~~~~~~~~~~l~~~l~~--~~~LlVlDdv~~~~~l~~l~~~~~~~~~~vl~t~~~------ 254 (445)
....++..+.... .....+.......+...+.+ +++||||||+|+..+++.+.+ +.++++|++.
T Consensus 198 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~-----~~~ilvTsR~~~~~~~ 272 (591)
T 1z6t_A 198 KLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDS-----QCQILLTTRDKSVTDS 272 (591)
T ss_dssp HHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCS-----SCEEEEEESCGGGGTT
T ss_pred HHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcC-----CCeEEEECCCcHHHHh
Confidence 2223333443211 12344566667778887776 789999999999988876621 3456666543
Q ss_pred --CceEEc---CCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCCCHHHHHHHHHHHhcC
Q 045345 255 --DEVHKL---KVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGKTTKEWESAPKRLERE 329 (445)
Q Consensus 255 --~~~~~l---~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~~~~~w~~~l~~l~~~ 329 (445)
...+++ ++|+.+||++||...++.. .....+.+.+|+++|+|+||||+++|++++... ..|...++.+...
T Consensus 273 ~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~---~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~ 348 (591)
T 1z6t_A 273 VMGPKYVVPVESSLGKEKGLEILSLFVNMK---KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNK 348 (591)
T ss_dssp CCSCEEEEECCSSCCHHHHHHHHHHHHTSC---GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSC
T ss_pred cCCCceEeecCCCCCHHHHHHHHHHHhCCC---cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHh
Confidence 234555 5899999999999988542 222345688999999999999999999998754 4688888887653
Q ss_pred C-----------chhHHHHHHHhhcCCcHhHHHHHhhhhccCCC--CCHHHHHHHHHhCCCCchhcHHHHhhcCceEEcc
Q 045345 330 S-----------ENEILDILKISFDGLRETEKKIFLDIACFYRG--EDRDYVTKIIDYCDFDPVIGIRVLIDKSLIEISN 396 (445)
Q Consensus 330 ~-----------~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~sLi~~~~ 396 (445)
. ...+..++..||+.|+++.|.||.++|+||.+ ++.+.+..+|..+.......++.|+++|||....
T Consensus 349 ~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~ 428 (591)
T 1z6t_A 349 QFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR 428 (591)
T ss_dssp CCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence 2 25799999999999999999999999999876 6778888888765555677899999999998654
Q ss_pred C---CeEEccHHHHHHHHHHHhh------------cC-------CCCCCCcccccccchHHHHhhhC
Q 045345 397 G---NRLRMHNLLQEMGQQIVKR------------QS-------PKEPGKRSRLWKEEDVHHVLTKN 441 (445)
Q Consensus 397 ~---~~~~mHdlvr~~ar~~~~~------------e~-------~~~~~~~~rlw~~~d~~~~l~~~ 441 (445)
+ .+|+||++||+++++.... -. +..++.+.++|+++.+.+++.-+
T Consensus 429 ~~~~~~~~~H~lv~~~~~~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~ 495 (591)
T 1z6t_A 429 NGKSFRYYLHDLQVDFLTEKNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAK 495 (591)
T ss_dssp ETTEEEEECCHHHHHHHHHHTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTT
T ss_pred CCCccEEEEcHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcC
Confidence 3 2699999999999887211 00 22334566778888888877654
No 4
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=100.00 E-value=2.4e-36 Score=316.61 Aligned_cols=293 Identities=16% Similarity=0.165 Sum_probs=217.3
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh--ccCcccc-ceeeehhhhhhccCCHHHHHHHHH
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL--SSHEFEA-SSFLANVREISEKGGLICLQKQLL 191 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~f~~-~~~~~~~~~~~~~~~~~~l~~~il 191 (445)
..|||+.++++|.++|... ++.++|+|+||||+||||||++++++ ++.+|+. ++|+. ++...+...+...++
T Consensus 129 ~~VGRe~eLeeL~elL~~~-d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll 203 (1221)
T 1vt4_I 129 YNVSRLQPYLKLRQALLEL-RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQ 203 (1221)
T ss_dssp SCCCCHHHHHHHHHHHHHC-CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHhcc-CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHH
Confidence 3499999999999998753 34789999999999999999999974 6788997 67776 455555666666666
Q ss_pred HHHhCCC---C--CC-----CcChhhhHHHHHHHH---ccCcEEEEEcCCCCHHHHHHhcCCCCCcCcccccccCCC---
Q 045345 192 SELLKLP---D--TS-----TWNVYDGLKMIGSRL---RYRKVLLIVDAAFDLKQLESLAGKHEWFDEHLLMTHGVD--- 255 (445)
Q Consensus 192 ~~l~~~~---~--~~-----~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~~~l~~l~~~~~~~~~~vl~t~~~~--- 255 (445)
..+.... . .. ..+.+.....++..| .++|+||||||||+.++++.+. . +.++++|++..
T Consensus 204 ~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~---p--GSRILVTTRd~~Va 278 (1221)
T 1vt4_I 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN---L--SCKILLTTRFKQVT 278 (1221)
T ss_dssp HHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH---S--SCCEEEECSCSHHH
T ss_pred HHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhhC---C--CeEEEEeccChHHH
Confidence 5432110 0 00 112334455666655 6799999999999999998874 1 45677777643
Q ss_pred ------ceEEcC------CCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCC--CHHHHHH
Q 045345 256 ------EVHKLK------VLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGK--TTKEWES 321 (445)
Q Consensus 256 ------~~~~l~------~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~--~~~~w~~ 321 (445)
..|.|+ +|+.+||++||++.. +.. . .++..++ |+|+||||+++|++|+.+ +..+|..
T Consensus 279 ~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-~----eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~ 349 (1221)
T 1vt4_I 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-P----QDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKH 349 (1221)
T ss_dssp HHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-T----TTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHH
T ss_pred HhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-H----HHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhc
Confidence 246777 999999999999884 322 1 1223333 999999999999999886 6778875
Q ss_pred HHHHHhcCCchhHHHHHHHhhcCCcHhH-HHHHhhhhccCCC--CCHHHHHHHHHhCCC-CchhcHHHHhhcCceEEcc-
Q 045345 322 APKRLERESENEILDILKISFDGLRETE-KKIFLDIACFYRG--EDRDYVTKIIDYCDF-DPVIGIRVLIDKSLIEISN- 396 (445)
Q Consensus 322 ~l~~l~~~~~~~i~~~l~~s~~~L~~~~-k~~~~~la~f~~~--~~~~~l~~~~~~~~~-~~~~~l~~L~~~sLi~~~~- 396 (445)
. ....+..+|..||+.|++++ |.||++||+||.+ ++.+.+..+|..++. .+...++.|+++|||+..+
T Consensus 350 ~-------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~ 422 (1221)
T 1vt4_I 350 V-------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422 (1221)
T ss_dssp C-------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSS
T ss_pred C-------ChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCC
Confidence 3 35789999999999999999 9999999999986 566788999987643 3667899999999999763
Q ss_pred CCeEEccHHHHHHHHHHHhhcCCCCCCCcccccccchHHHHh
Q 045345 397 GNRLRMHNLLQEMGQQIVKRQSPKEPGKRSRLWKEEDVHHVL 438 (445)
Q Consensus 397 ~~~~~mHdlvr~~ar~~~~~e~~~~~~~~~rlw~~~d~~~~l 438 (445)
.++|+||||+++++ ......+..+.|+.++-++.+++
T Consensus 423 ~~rYrMHDLllELr-----~~~~e~~alHrRLvd~Y~~~~vf 459 (1221)
T 1vt4_I 423 ESTISIPSIYLELK-----VKLENEYALHRSIVDHYNIPKTF 459 (1221)
T ss_dssp SSEEBCCCHHHHHH-----HHHSCCTTHHHHHHHHHHHHHHC
T ss_pred CCEEEehHHHHHHh-----cCCCcHHHHHHHHHHHHHhhCcC
Confidence 57899999998743 11123455666666665555444
No 5
>3jrn_A AT1G72930 protein; TIR domain arabidopsis thaliana, plant protein; 2.00A {Arabidopsis thaliana}
Probab=100.00 E-value=1.6e-33 Score=239.87 Aligned_cols=103 Identities=41% Similarity=0.653 Sum_probs=94.4
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCCcccccccchHHHHHHHhHHhhhhcHHHHHHHHHHHHHHHhhcC
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRMNIEKVQKWRDALKKVANVSG 80 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~g 80 (445)
|||+|+|||+||++|++|+++++ ++||||||+|+||+||+|+|+||++|.+|+++ .+.+++++||.||+++||++|
T Consensus 73 ny~~S~WCl~EL~~i~~~~~~~~--~~ViPIfy~V~ps~Vr~q~g~fg~af~~~~~~--~~~~~~~~Wr~AL~~va~~~G 148 (176)
T 3jrn_A 73 NYAASSWCLDELVTIMDFEKKGS--ITVMPIFYGVEPNHVRWQTGVLAEQFKKHASR--EDPEKVLKWRQALTNFAQLSG 148 (176)
T ss_dssp TTTTCHHHHHHHHHHHHHHHTTS--CEEEEEECSSCHHHHHHTCTHHHHHHHHHHTT--SCHHHHHHHHHHHHHHTTSCC
T ss_pred CcCCChhHHHHHHHHHhhhccCC--CEEEEEEecCCHHHhhhccCcHHHHHHHHHhc--cCHHHHHHHHHHHHHHhcccc
Confidence 79999999999999999999999 99999999999999999999999999999987 467899999999999999999
Q ss_pred CccCCchhhhhHhhhhhcccCCCCCCCCCc
Q 045345 81 WELKDRSESEFIVDIVKDILEMPSKIPAKS 110 (445)
Q Consensus 81 ~~~~~~~e~~~i~~iv~~v~~~p~~~~~~~ 110 (445)
|++. .+|+++|++||++|+++ +.++|+
T Consensus 149 ~~~~-~~e~~~i~~Iv~~v~~~--l~~~~~ 175 (176)
T 3jrn_A 149 DCSG-DDDSKLVDKIANEISNK--KTIYAT 175 (176)
T ss_dssp EECC-SCHHHHHHHHHHHHHTT--CC----
T ss_pred eecC-CCHHHHHHHHHHHHHHH--hcCCCC
Confidence 9994 67999999999999999 877664
No 6
>3ozi_A L6TR; plant TIR domain, plant protein; 2.30A {Linum usitatissimum}
Probab=99.97 E-value=8.7e-32 Score=232.59 Aligned_cols=98 Identities=40% Similarity=0.763 Sum_probs=90.9
Q ss_pred CCCCChhhHHHHHHHHhchhc-CCCccEEEeeeccCCCcccccccchHHHHHHHhHHhhhhcHHHHHHHHHHHHHHHhhc
Q 045345 1 NYAYSTWCLDELVEIVELKST-NGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEETFRMNIEKVQKWRDALKKVANVS 79 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~-~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al~~~~~~~ 79 (445)
|||+|+|||+||++||+|+++ ++ ++||||||+|+||+||+|+|+||++|.+|++++. .+++++||.||+++|+++
T Consensus 100 nYa~S~WCl~EL~~I~e~~~~~~~--~~ViPIFY~VdPs~Vr~q~g~fg~af~~~~~~~~--~~~v~~Wr~AL~~va~ls 175 (204)
T 3ozi_A 100 GYADSKWCLMELAEIVRRQEEDPR--RIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFD--GQTIQNWKDALKKVGDLK 175 (204)
T ss_dssp TGGGCHHHHHHHHHHHHHHHHCTT--SEECCEEESSCHHHHHHTCTTHHHHHHHHTTTSC--HHHHHHHHHHHHHHHTSC
T ss_pred ccccCcHHHHHHHHHHHHHHhcCC--eeeEEEEeecCHHHHHhccccHHHHHHHHHHhhC--HHHHHHHHHHHHHHhccC
Confidence 799999999999999999975 57 8999999999999999999999999999998874 478999999999999999
Q ss_pred CCccCCch-hhhhHhhhhhcccCC
Q 045345 80 GWELKDRS-ESEFIVDIVKDILEM 102 (445)
Q Consensus 80 g~~~~~~~-e~~~i~~iv~~v~~~ 102 (445)
||++.... |+++|++||.+|.++
T Consensus 176 G~~~~~~~~e~~~i~~Iv~di~~k 199 (204)
T 3ozi_A 176 GWHIGKNDKQGAIADKVSADIWSH 199 (204)
T ss_dssp BEEECTTSCHHHHHHHHHHHHHHH
T ss_pred ceecCCCCCHHHHHHHHHHHHHHH
Confidence 99997754 789999999999877
No 7
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.81 E-value=7.7e-19 Score=169.75 Aligned_cols=285 Identities=13% Similarity=0.066 Sum_probs=171.2
Q ss_pred CCCCCccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhh---ccC
Q 045345 105 KIPAKSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREIS---EKG 181 (445)
Q Consensus 105 ~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~---~~~ 181 (445)
+.+.++..+..|+||+.+++.|.+.+..+ +++.|+|++|+|||+|++++++... .+|+... ... ...
T Consensus 3 F~~~~~~~~~~~~gR~~el~~L~~~l~~~----~~v~i~G~~G~GKT~Ll~~~~~~~~-----~~~~~~~-~~~~~~~~~ 72 (350)
T 2qen_A 3 FDLRPKTRREDIFDREEESRKLEESLENY----PLTLLLGIRRVGKSSLLRAFLNERP-----GILIDCR-ELYAERGHI 72 (350)
T ss_dssp SCCSCCCSGGGSCSCHHHHHHHHHHHHHC----SEEEEECCTTSSHHHHHHHHHHHSS-----EEEEEHH-HHHHTTTCB
T ss_pred CCCCCCCChHhcCChHHHHHHHHHHHhcC----CeEEEECCCcCCHHHHHHHHHHHcC-----cEEEEee-cccccccCC
Confidence 66677777889999999999999988742 6899999999999999999998752 5555422 111 112
Q ss_pred CHHHHHHHHHHHHhC----------------CC-CCCCcChhhhHHHHHHHHcc-CcEEEEEcCCCCHHH---------H
Q 045345 182 GLICLQKQLLSELLK----------------LP-DTSTWNVYDGLKMIGSRLRY-RKVLLIVDAAFDLKQ---------L 234 (445)
Q Consensus 182 ~~~~l~~~il~~l~~----------------~~-~~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~~~~~---------l 234 (445)
+...+...+...+.. .. .....+.......+...... ++++|||||++.... +
T Consensus 73 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~ 152 (350)
T 2qen_A 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELL 152 (350)
T ss_dssp CHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHH
Confidence 334444444443321 00 00112344445555555443 499999999976321 2
Q ss_pred H---HhcCCCCCc-------Cccccc------c------cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHH
Q 045345 235 E---SLAGKHEWF-------DEHLLM------T------HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKY 292 (445)
Q Consensus 235 ~---~l~~~~~~~-------~~~vl~------t------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~ 292 (445)
. .+....... ....+. . .+....+++.+|+.+|+.+++........... ..+.+..
T Consensus 153 ~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~--~~~~~~~ 230 (350)
T 2qen_A 153 ALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV--PENEIEE 230 (350)
T ss_dssp HHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHH
T ss_pred HHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHH
Confidence 2 221111111 111000 0 01124789999999999999987542211111 1346788
Q ss_pred HHHHhCCChHHHHHHHHhhCC-CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCC---cHhHHHHHhhhhccCCCCCHHHH
Q 045345 293 VVKYSGGLPLALKVLGSFLYG-KTTKEWESAPKRLERESENEILDILKISFDGL---RETEKKIFLDIACFYRGEDRDYV 368 (445)
Q Consensus 293 i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L---~~~~k~~~~~la~f~~~~~~~~l 368 (445)
+++.+||+|+++..++..+.. .+...+ ...+.. .+...+...+..+ ++..+.++..+|+ ...+...+
T Consensus 231 i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~~~~~----~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l 301 (350)
T 2qen_A 231 AVELLDGIPGWLVVFGVEYLRNGDFGRA---MKRTLE----VAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLI 301 (350)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCHHHH---HHHHHH----HHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHhHH---HHHHHH----HHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHH
Confidence 999999999999999876432 222222 111111 1111222222333 6888999999998 34566777
Q ss_pred HHHHHhC--CCC---chhcHHHHhhcCceEEccCCeEE-ccHHHHHHHH
Q 045345 369 TKIIDYC--DFD---PVIGIRVLIDKSLIEISNGNRLR-MHNLLQEMGQ 411 (445)
Q Consensus 369 ~~~~~~~--~~~---~~~~l~~L~~~sLi~~~~~~~~~-mHdlvr~~ar 411 (445)
...+... +.. ...+++.|.+.+||... ++.|. .|++++.+.+
T Consensus 302 ~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 302 RDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-DNTYKIADPVVATVLR 349 (350)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-TTEEEESSHHHHHHHT
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-CCEEEEecHHHHHHHc
Confidence 6665321 222 34579999999999876 46665 5889888754
No 8
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=99.79 E-value=7.7e-18 Score=163.10 Aligned_cols=284 Identities=14% Similarity=0.109 Sum_probs=162.9
Q ss_pred CCCCCccccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhh--ccCC
Q 045345 105 KIPAKSEIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREIS--EKGG 182 (445)
Q Consensus 105 ~~~~~~~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~--~~~~ 182 (445)
+.+.++..+..|+||+.+++.|.+ +.. +++.|+|++|+|||+|++++++..... .+|+... ... ...+
T Consensus 4 f~~~~~~~~~~~~gR~~el~~L~~-l~~-----~~v~i~G~~G~GKT~L~~~~~~~~~~~---~~~~~~~-~~~~~~~~~ 73 (357)
T 2fna_A 4 FDTSPKDNRKDFFDREKEIEKLKG-LRA-----PITLVLGLRRTGKSSIIKIGINELNLP---YIYLDLR-KFEERNYIS 73 (357)
T ss_dssp TCSSCCCSGGGSCCCHHHHHHHHH-TCS-----SEEEEEESTTSSHHHHHHHHHHHHTCC---EEEEEGG-GGTTCSCCC
T ss_pred CCCCCCCCHHHhcChHHHHHHHHH-hcC-----CcEEEECCCCCCHHHHHHHHHHhcCCC---EEEEEch-hhccccCCC
Confidence 445556677889999999999999 763 599999999999999999999876432 4555421 110 0112
Q ss_pred HHHHHHHHHHHHh-------------CCC------CC---------CCcChhhhHHHHHHHHccCcEEEEEcCCCCHH--
Q 045345 183 LICLQKQLLSELL-------------KLP------DT---------STWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-- 232 (445)
Q Consensus 183 ~~~l~~~il~~l~-------------~~~------~~---------~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-- 232 (445)
.......+...+. ..- .. ...........+.+... ++++|||||++...
T Consensus 74 ~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~ 152 (357)
T 2fna_A 74 YKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKL 152 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGC
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhcc
Confidence 2223322222211 000 00 01122233333332211 49999999997532
Q ss_pred -------HHHHhcCCCCCc-------Cccccc------------ccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHH
Q 045345 233 -------QLESLAGKHEWF-------DEHLLM------------THGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEY 286 (445)
Q Consensus 233 -------~l~~l~~~~~~~-------~~~vl~------------t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~ 286 (445)
.+..+....... ....+. ..+....+++.+|+.+|+.+++.............
T Consensus 153 ~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~- 231 (357)
T 2fna_A 153 RGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD- 231 (357)
T ss_dssp TTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-
T ss_pred CchhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-
Confidence 132222111111 111100 00112578999999999999998754211111111
Q ss_pred HHHHHHHHHHhCCChHHHHHHHHhhCC-CCHHHHHHHHHHHhcCCchhHHHHHHHhh---cCCcHhHHHHHhhhhccCCC
Q 045345 287 EQLSKYVVKYSGGLPLALKVLGSFLYG-KTTKEWESAPKRLERESENEILDILKISF---DGLRETEKKIFLDIACFYRG 362 (445)
Q Consensus 287 ~~~~~~i~~~~~GlPLal~~~~~~L~~-~~~~~w~~~l~~l~~~~~~~i~~~l~~s~---~~L~~~~k~~~~~la~f~~~ 362 (445)
...|++.++|+|+++..++..+.. .+...|.. .+.......+..-+...+ ..|++..+.++..+|+ . .
T Consensus 232 ---~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~ 303 (357)
T 2fna_A 232 ---YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G 303 (357)
T ss_dssp ---HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C
Confidence 178999999999999999877643 23333321 111111111222222111 1688999999999998 3 3
Q ss_pred CCHHHHHHHHH-hCC--C---CchhcHHHHhhcCceEEccCCeEE-ccHHHHHHH
Q 045345 363 EDRDYVTKIID-YCD--F---DPVIGIRVLIDKSLIEISNGNRLR-MHNLLQEMG 410 (445)
Q Consensus 363 ~~~~~l~~~~~-~~~--~---~~~~~l~~L~~~sLi~~~~~~~~~-mHdlvr~~a 410 (445)
+...+...+. ..| . .....++.|.+.+||...+ +.|+ .|++++++.
T Consensus 304 -~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~~-~~y~f~~~~~~~~l 356 (357)
T 2fna_A 304 -KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKEG-EKYCPSEPLISLAF 356 (357)
T ss_dssp -CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEESS-SCEEESSHHHHHHT
T ss_pred -CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEecC-CEEEecCHHHHHhh
Confidence 6666664432 122 2 2356799999999999874 5565 689999874
No 9
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.71 E-value=6.6e-16 Score=152.70 Aligned_cols=271 Identities=15% Similarity=0.074 Sum_probs=163.1
Q ss_pred ccccccccchhHHHHHhhh-cc--CC--CCeEEEEE--EccCCCchhHHHHHHHhhccCcc-----c-cceeeehhhhhh
Q 045345 112 IFKDLVGMDSCWNTLRFLM-DK--EP--YGVRMIGI--CGMGGIGKTTLARVVYDLSSHEF-----E-ASSFLANVREIS 178 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L-~~--~~--~~~~vv~I--~G~gGiGKTtLA~~~~~~~~~~f-----~-~~~~~~~~~~~~ 178 (445)
.+..|+||+.+++.|...+ .. .. ...+.+.| +|++|+|||+||+.+++.....+ . ..+|+. ..
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 95 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AF 95 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GG
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CC
Confidence 4578999999999999988 42 11 23456667 99999999999999998765421 2 235554 23
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCH--------HHHHHhcCC---CC--C
Q 045345 179 EKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDL--------KQLESLAGK---HE--W 243 (445)
Q Consensus 179 ~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--------~~l~~l~~~---~~--~ 243 (445)
...+...+...++..++........+.......+...+. +++++|||||++.. +.+..+... .. .
T Consensus 96 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~ 175 (412)
T 1w5s_A 96 NAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRD 175 (412)
T ss_dssp GCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTT
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCC
Confidence 345677788888888764322222334455556666664 67999999999764 333322211 00 0
Q ss_pred --cCccccccc------------------CCCceEEcCCCCHHHHHHHHHHhh---cCCCCCchHHHHHHHHHHHHhC--
Q 045345 244 --FDEHLLMTH------------------GVDEVHKLKVLHDDEALQLFCKQA---FKTNQPWKEYEQLSKYVVKYSG-- 298 (445)
Q Consensus 244 --~~~~vl~t~------------------~~~~~~~l~~L~~~ea~~Lf~~~a---~~~~~~~~~~~~~~~~i~~~~~-- 298 (445)
....++.++ +....+.+++|+.+++.++|...+ +..... ..+.+..+++.++
T Consensus 176 ~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~---~~~~~~~i~~~~~~~ 252 (412)
T 1w5s_A 176 GVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVW---EPRHLELISDVYGED 252 (412)
T ss_dssp SCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSC---CHHHHHHHHHHHCGG
T ss_pred CCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHh
Confidence 111122121 112238999999999999997654 222112 2356788999999
Q ss_pred ----CChHHHHHHHHhhC------C---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC----C
Q 045345 299 ----GLPLALKVLGSFLY------G---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFY----R 361 (445)
Q Consensus 299 ----GlPLal~~~~~~L~------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~----~ 361 (445)
|+|..+..+..... + -+...+...+..... ...+..++..||+..+.++..+|.++ .
T Consensus 253 ~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~ 326 (412)
T 1w5s_A 253 KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGME 326 (412)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCS
T ss_pred ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCC
Confidence 99976655543211 1 122333333322110 23456677899999999999999754 2
Q ss_pred CCCHHHHHH----HH-HhCCCC------chhcHHHHhhcCceEEc
Q 045345 362 GEDRDYVTK----II-DYCDFD------PVIGIRVLIDKSLIEIS 395 (445)
Q Consensus 362 ~~~~~~l~~----~~-~~~~~~------~~~~l~~L~~~sLi~~~ 395 (445)
.++...+.. +. ...+.. ....++.|.+.+||...
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 327 WINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp SBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEee
Confidence 345543322 22 222322 24568999999999864
No 10
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.65 E-value=2e-14 Score=140.71 Aligned_cols=268 Identities=14% Similarity=0.067 Sum_probs=166.9
Q ss_pred ccccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCc--------cccceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE--------FEASSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--------f~~~~~~~~~~~~~~~~ 181 (445)
.+..|+||+.+++.+..++.. .....+.+.|+|++|+|||+||+.+++.+... ....+++. .....
T Consensus 18 ~p~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~ 93 (384)
T 2qby_B 18 VFKEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVG 93 (384)
T ss_dssp HCSSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHC
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCC
Confidence 347899999999999987764 23345689999999999999999999876333 12234444 22233
Q ss_pred -CHHHHHHHHHHHHhCCCCC-CCcChhhhHHHHHHHHccCcEEEEEcCCCCHH------H-HHHhcCCCCCcCccccccc
Q 045345 182 -GLICLQKQLLSELLKLPDT-STWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK------Q-LESLAGKHEWFDEHLLMTH 252 (445)
Q Consensus 182 -~~~~l~~~il~~l~~~~~~-~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~------~-l~~l~~~~~~~~~~vl~t~ 252 (445)
+...+...++..+.+.... ...+.......+...+..++.+|||||++... . +..+..... +..++.++
T Consensus 94 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~--~~~iI~~t 171 (384)
T 2qby_B 94 GTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDA--NISVIMIS 171 (384)
T ss_dssp SCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSSS--CEEEEEEC
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCCc--ceEEEEEE
Confidence 6667777888877543222 22233455667777777766699999997543 2 444443221 11121111
Q ss_pred ---------------CCCceEEcCCCCHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHHhC---CChH-HHHHHHHh
Q 045345 253 ---------------GVDEVHKLKVLHDDEALQLFCKQAF---KTNQPWKEYEQLSKYVVKYSG---GLPL-ALKVLGSF 310 (445)
Q Consensus 253 ---------------~~~~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPL-al~~~~~~ 310 (445)
+....+.+++++.++..++|...+. .....+ .+....+++.++ |.|. ++..+-..
T Consensus 172 ~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~G~~r~a~~~l~~a 248 (384)
T 2qby_B 172 NDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYD---DEILSYIAAISAKEHGDARKAVNLLFRA 248 (384)
T ss_dssp SSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCC---SHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred CCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcC---HHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2234799999999999999998752 222222 245667888887 9887 44333322
Q ss_pred --hC----CCCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCC-CCCHHHHHHHHHhCCCC-----
Q 045345 311 --LY----GKTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYR-GEDRDYVTKIIDYCDFD----- 378 (445)
Q Consensus 311 --L~----~~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-~~~~~~l~~~~~~~~~~----- 378 (445)
+. .-+.+.+..++.... ...+..+++.|++.++.++..++.... +........+....|..
T Consensus 249 ~~~a~~~~~i~~~~v~~~~~~~~-------~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 321 (384)
T 2qby_B 249 AQLASGGGIIRKEHVDKAIVDYE-------QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYR 321 (384)
T ss_dssp HHHTTSSSCCCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHH
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHH
Confidence 21 134566666665542 234667788999999998888887212 11112333333333322
Q ss_pred -chhcHHHHhhcCceEEc
Q 045345 379 -PVIGIRVLIDKSLIEIS 395 (445)
Q Consensus 379 -~~~~l~~L~~~sLi~~~ 395 (445)
....+..|.+.|||+..
T Consensus 322 ~~~~~l~~L~~~gli~~~ 339 (384)
T 2qby_B 322 RFSDIISELDMFGIVKIR 339 (384)
T ss_dssp HHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCEEEE
Confidence 23468899999999864
No 11
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.63 E-value=7.3e-15 Score=143.62 Aligned_cols=300 Identities=13% Similarity=0.057 Sum_probs=172.1
Q ss_pred ccccccccchhHHHHHhhhccC--CCCeEEEEEEccCCCchhHHHHHHHhhccCccc---cceeeehhhhhhccCCHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE--PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFE---ASSFLANVREISEKGGLICL 186 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~---~~~~~~~~~~~~~~~~~~~l 186 (445)
.+..|+||+.+++.|..++... ....+.+.|+|++|+||||||+.+++.....+. ..+|+. .........+
T Consensus 18 ~p~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~ 93 (386)
T 2qby_A 18 IPDELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRV 93 (386)
T ss_dssp CCSCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHH
T ss_pred CCCCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHH
Confidence 4578999999999999988742 334568899999999999999999987654431 334554 2223345555
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCHH------HHHHhcCCC---CCcCcc-ccccc--
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDLK------QLESLAGKH---EWFDEH-LLMTH-- 252 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~------~l~~l~~~~---~~~~~~-vl~t~-- 252 (445)
...++..++........+.......+...+. +++.+||||+++... .+..+.... ...+.. +++++
T Consensus 94 ~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 94 LADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp HHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 5666555533222122234444555555554 348999999996532 233332110 100111 11111
Q ss_pred ------------CCC-ceEEcCCCCHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHHhC---CChHHHHHHHHhhC-
Q 045345 253 ------------GVD-EVHKLKVLHDDEALQLFCKQAF---KTNQPWKEYEQLSKYVVKYSG---GLPLALKVLGSFLY- 312 (445)
Q Consensus 253 ------------~~~-~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPLal~~~~~~L~- 312 (445)
+.. ..+.+++++.++..+++...+. ...... .+....+++.++ |.|..+..+.....
T Consensus 174 ~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~ 250 (386)
T 2qby_A 174 KFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLP---DNVIKLCAALAAREHGDARRALDLLRVSGE 250 (386)
T ss_dssp GGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSC---HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred ChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 111 4789999999999999987642 112222 345666777777 99984443332211
Q ss_pred -----C---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCC-C---CCHHHH----HHHHHhCC
Q 045345 313 -----G---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYR-G---EDRDYV----TKIIDYCD 376 (445)
Q Consensus 313 -----~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~-~---~~~~~l----~~~~~~~~ 376 (445)
+ -+.+.+..++.... ...+..++..|++..+.++..++.+.. + ++...+ ..+....|
T Consensus 251 ~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g 323 (386)
T 2qby_A 251 IAERMKDTKVKEEYVYMAKEEIE-------RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLG 323 (386)
T ss_dssp HHHHTTCSSCCHHHHHHHHHHHH-------HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCccCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcC
Confidence 1 23445555444432 235667788899999999888885432 2 233322 22222222
Q ss_pred CC------chhcHHHHhhcCceEEccCCeEEccHHHHHHHHHHHhhcCCCCCCCcccccccchHHHHhhh-Cc
Q 045345 377 FD------PVIGIRVLIDKSLIEISNGNRLRMHNLLQEMGQQIVKRQSPKEPGKRSRLWKEEDVHHVLTK-NT 442 (445)
Q Consensus 377 ~~------~~~~l~~L~~~sLi~~~~~~~~~mHdlvr~~ar~~~~~e~~~~~~~~~rlw~~~d~~~~l~~-~~ 442 (445)
.. ...+++.|.+.|+|+....+ ..........+-.|+++|+..+|.+ +.
T Consensus 324 ~~~~~~~~~~~~l~~L~~~gli~~~~~~-----------------~~~~g~y~~~~l~~~~~~v~~~l~~~~~ 379 (386)
T 2qby_A 324 VEAVTQRRVSDIINELDMVGILTAKVVN-----------------RGRYGKTKEIGLAVDKNIIVRSLIESDS 379 (386)
T ss_dssp CCCCCHHHHHHHHHHHHHHTSEEEEECC-----------------CTTSCCCEEEEESSCSHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhCCCEEEEeec-----------------CCCCCCeEEEEeCCCHHHHHHHHhcCCh
Confidence 22 24568899999999864210 0000011123346788888888876 43
No 12
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.60 E-value=9.9e-14 Score=135.64 Aligned_cols=295 Identities=12% Similarity=0.027 Sum_probs=177.7
Q ss_pred ccccccccchhHHHHHhhhccC--CCCeEEEEEEccCCCchhHHHHHHHhhccCcc------ccceeeehhhhhhccCCH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE--PYGVRMIGICGMGGIGKTTLARVVYDLSSHEF------EASSFLANVREISEKGGL 183 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f------~~~~~~~~~~~~~~~~~~ 183 (445)
.+..|+||+.+++.+..++... ....+.+.|+|++|+|||+||+.+++.....+ ...+++. .....+.
T Consensus 17 ~p~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~ 92 (387)
T 2v1u_A 17 VPDVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETP 92 (387)
T ss_dssp CCSCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCH
Confidence 3478999999999999988542 33456889999999999999999998764321 1234444 3344566
Q ss_pred HHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCHH-------HHHHhcCCCC----CcCcccc-
Q 045345 184 ICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDLK-------QLESLAGKHE----WFDEHLL- 249 (445)
Q Consensus 184 ~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~~-------~l~~l~~~~~----~~~~~vl- 249 (445)
..+...++..++........+.......+...+. +++.+||||+++... .+..+..... ..+..++
T Consensus 93 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~ 172 (387)
T 2v1u_A 93 YRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVG 172 (387)
T ss_dssp HHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEE
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEE
Confidence 6777888888764333233334555566666663 468999999998543 1222221110 0011111
Q ss_pred ccc--------------CCC-ceEEcCCCCHHHHHHHHHHhhc---CCCCCchHHHHHHHHHHHHhC---CChHHH-HHH
Q 045345 250 MTH--------------GVD-EVHKLKVLHDDEALQLFCKQAF---KTNQPWKEYEQLSKYVVKYSG---GLPLAL-KVL 307 (445)
Q Consensus 250 ~t~--------------~~~-~~~~l~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~~~~~i~~~~~---GlPLal-~~~ 307 (445)
+++ +.. ..+.+++++.++..+++...+. .....+ .+....+++.++ |.|..+ ..+
T Consensus 173 ~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~G~~r~~~~~l 249 (387)
T 2v1u_A 173 ITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLD---PDVVPLCAALAAREHGDARRALDLL 249 (387)
T ss_dssp ECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBC---SSHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred EECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCC---HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 111 122 3689999999999999987752 222212 244677888888 999433 332
Q ss_pred HHhh--C---C---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCCC---CCHHHHH----HHH
Q 045345 308 GSFL--Y---G---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYRG---EDRDYVT----KII 372 (445)
Q Consensus 308 ~~~L--~---~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~~---~~~~~l~----~~~ 372 (445)
.... . + -+.+.+..++.... ...+..++..|++.++.++..++.+..+ +....+. .+.
T Consensus 250 ~~a~~~a~~~~~~~i~~~~v~~a~~~~~-------~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~ 322 (387)
T 2v1u_A 250 RVAGEIAERRREERVRREHVYSARAEIE-------RDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELT 322 (387)
T ss_dssp HHHHHHHHHTTCSCBCHHHHHHHHHHHH-------HHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcCHHHHHHHHHHHh-------hchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 2221 1 1 24555655555442 2346667889999999988888854333 2333222 222
Q ss_pred HhCCCC------chhcHHHHhhcCceEEcc-----CCeEEccHHHHHHHHHHHhhcCCCCCCCcccccccchHHHHhhhC
Q 045345 373 DYCDFD------PVIGIRVLIDKSLIEISN-----GNRLRMHNLLQEMGQQIVKRQSPKEPGKRSRLWKEEDVHHVLTKN 441 (445)
Q Consensus 373 ~~~~~~------~~~~l~~L~~~sLi~~~~-----~~~~~mHdlvr~~ar~~~~~e~~~~~~~~~rlw~~~d~~~~l~~~ 441 (445)
...+.. ....++.|...|+++... .|++ ...+-.|++++|..+|.++
T Consensus 323 ~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~----------------------~~~~l~~~~~~i~~~l~~~ 380 (387)
T 2v1u_A 323 STLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKT----------------------REVSLDADRLAVENALSED 380 (387)
T ss_dssp HHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEE----------------------EEEEECSCHHHHHHHHHHS
T ss_pred HhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCce----------------------eEEEecCCHHHHHHHHhcc
Confidence 222322 234688899999998642 1222 2344567777787777766
Q ss_pred c
Q 045345 442 T 442 (445)
Q Consensus 442 ~ 442 (445)
.
T Consensus 381 ~ 381 (387)
T 2v1u_A 381 P 381 (387)
T ss_dssp T
T ss_pred H
Confidence 4
No 13
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.55 E-value=5.1e-13 Score=130.78 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=171.9
Q ss_pred cccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc-ccceeeehhhhhhccCCHHHHH
Q 045345 113 FKDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF-EASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
++.++||+.+++.+..++.. .....+.+.|+|++|+||||||+.++....... ...+++. .........+.
T Consensus 16 p~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~ 91 (389)
T 1fnn_A 16 PKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAII 91 (389)
T ss_dssp CSCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHH
T ss_pred CCCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHH
Confidence 47899999999999988874 222234899999999999999999998865542 2344444 33344566777
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHc--cCcEEEEEcCCCCH--HHHHHhcCCCCC------cCcccccc-cCC--
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLR--YRKVLLIVDAAFDL--KQLESLAGKHEW------FDEHLLMT-HGV-- 254 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~--~~~~LlVlDdv~~~--~~l~~l~~~~~~------~~~~vl~t-~~~-- 254 (445)
..++..++........+.......+...+. +++.+||||+++.. ..+..+...... .+..++.+ +..
T Consensus 92 ~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 92 GEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred HHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 777777654322222344455555555554 56899999999753 333333211110 01122221 111
Q ss_pred -------------CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHh---------CCChHHHHHHHHhhC
Q 045345 255 -------------DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYS---------GGLPLALKVLGSFLY 312 (445)
Q Consensus 255 -------------~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~---------~GlPLal~~~~~~L~ 312 (445)
...+.+++++.++..+++...+........-..+....+++.+ +|.|..+..+.....
T Consensus 172 ~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~ 251 (389)
T 1fnn_A 172 LNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSA 251 (389)
T ss_dssp HHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHH
T ss_pred HHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHH
Confidence 1268999999999999998775321001112235678899999 798865544433221
Q ss_pred ------C---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC---C--CCCHHHHHHHHHh----
Q 045345 313 ------G---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFY---R--GEDRDYVTKIIDY---- 374 (445)
Q Consensus 313 ------~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~---~--~~~~~~l~~~~~~---- 374 (445)
+ -+.+............ .+...+..|+...+.++..++.+. . .++...+...+..
T Consensus 252 ~~a~~~~~~~i~~~~v~~~~~~~~~~-------~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~ 324 (389)
T 1fnn_A 252 YAAQQNGRKHIAPEDVRKSSKEVLFG-------ISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEE 324 (389)
T ss_dssp HHHHHTTCSSCCHHHHHHHHHHHSCC-------CCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHHHhhh-------hHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHH
Confidence 1 1233333333332211 122335678888888888887654 2 3444444443322
Q ss_pred CCCC------chhcHHHHhhcCceEEccC-------CeE-------EccHHHHHHHHHHHhhc
Q 045345 375 CDFD------PVIGIRVLIDKSLIEISNG-------NRL-------RMHNLLQEMGQQIVKRQ 417 (445)
Q Consensus 375 ~~~~------~~~~l~~L~~~sLi~~~~~-------~~~-------~mHdlvr~~ar~~~~~e 417 (445)
.+.. ....+..|...+||..... |++ ..|++++.+...++.+|
T Consensus 325 ~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~~ 387 (389)
T 1fnn_A 325 YGERPRVHSQLWSYLNDLREKGIVETRQNKRGEGVRGRTTLISIGTEPLDTLEAVITKLIKEE 387 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTSSEEEEC---------CEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHhCCCeEEeeeccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHHh
Confidence 2221 2346899999999987433 222 24566666666666544
No 14
>3h16_A TIR protein; bacteria TIR domain, signaling protein; 2.50A {Paracoccus denitrificans PD1222}
Probab=99.41 E-value=1.5e-14 Score=122.28 Aligned_cols=54 Identities=19% Similarity=0.349 Sum_probs=49.7
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCCcccccccchHHHHHHHhHH
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEPTVVRKQTASFGEAFSKHEE 56 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~ps~vr~~~~~~~~~~~~~~~ 56 (445)
||++|.||++||.+|++|.++++ +.||||||+|+|++||+|+|.|+++|.....
T Consensus 84 ~y~~S~wc~~El~~~~~~~~~~~--~~iiPV~~~v~p~~v~~~~~~~~~~~~~~~~ 137 (154)
T 3h16_A 84 HFFKKEWPQKELDGLFQLESSGR--SRILPIWHKVSKDEVASFSPTMADKLAFNTS 137 (154)
T ss_dssp HHHTTCCCHHHHHHHTCCCTTSC--CCEEEEEESCCTGGGTTTCCCCCSSCCEETT
T ss_pred chhcChHHHHHHHHHHHHHhcCC--CEEEEEEecCCHHHHhhCCccHHHHHhhhcC
Confidence 69999999999999999988888 8999999999999999999999998876543
No 15
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.26 E-value=5.1e-11 Score=108.13 Aligned_cols=186 Identities=14% Similarity=0.097 Sum_probs=104.8
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLL 191 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il 191 (445)
....++||+..++.|...+..+. ..+.+.|+|++|+||||||+.+++.+...+....... ..... ...+.
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~~-~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~ 90 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDN-CREIE 90 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHTC-CCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHH-HHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcCC-CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHH-HHHHh
Confidence 34679999999999999887532 2347889999999999999999987644321110000 00000 00000
Q ss_pred HHH----hCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCC--HHHHHHhc---CCCCCcCcccccccC----
Q 045345 192 SEL----LKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFD--LKQLESLA---GKHEWFDEHLLMTHG---- 253 (445)
Q Consensus 192 ~~l----~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~--~~~l~~l~---~~~~~~~~~vl~t~~---- 253 (445)
... ........... .....+...+ .+++.+|||||++. ...++.+. ..... +..++.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~-~~~~i~~t~~~~~ 168 (250)
T 1njg_A 91 QGRFVDLIEIDAASRTKV-EDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE-HVKFLLATTDPQK 168 (250)
T ss_dssp TTCCSSEEEEETTCGGGH-HHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCT-TEEEEEEESCGGG
T ss_pred ccCCcceEEecCcccccH-HHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCC-ceEEEEEeCChHh
Confidence 000 00000000011 1111122221 34679999999974 33333332 11111 122222211
Q ss_pred -------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh
Q 045345 254 -------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL 311 (445)
Q Consensus 254 -------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L 311 (445)
....+++++++.++..+++...+....... ..+....|++.++|+|..+..+...+
T Consensus 169 ~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 169 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB--CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 124689999999999999988764332221 13557889999999999988776543
No 16
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.23 E-value=1.4e-10 Score=103.83 Aligned_cols=175 Identities=15% Similarity=0.102 Sum_probs=101.6
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
.....++|++..++.+..++.... .+.+.|+|++|+|||+||+.+++.+........++... .+...+...+.. .
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~ 88 (226)
T 2chg_A 14 RTLDEVVGQDEVIQRLKGYVERKN--IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN--ASDERGIDVVRH-K 88 (226)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE--TTCTTCHHHHHH-H
T ss_pred CCHHHHcCcHHHHHHHHHHHhCCC--CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec--cccccChHHHHH-H
Confidence 345679999999999999988542 23488999999999999999998753332222222200 111122222111 1
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCcccccccC-----------C
Q 045345 191 LSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLLMTHG-----------V 254 (445)
Q Consensus 191 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl~t~~-----------~ 254 (445)
+........ ....++.+|||||++.. ...+.+ +..... +..++.++. .
T Consensus 89 ~~~~~~~~~---------------~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~-~~~~i~~~~~~~~~~~~l~~r 152 (226)
T 2chg_A 89 IKEFARTAP---------------IGGAPFKIIFLDEADALTADAQAALRRTMEMYSK-SCRFILSCNYVSRIIEPIQSR 152 (226)
T ss_dssp HHHHHTSCC---------------STTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHTT
T ss_pred HHHHhcccC---------------CCccCceEEEEeChhhcCHHHHHHHHHHHHhcCC-CCeEEEEeCChhhcCHHHHHh
Confidence 111111000 01257889999999753 222222 211111 122222221 1
Q ss_pred CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 255 DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 255 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
...+++.+++.++..+++...+....... ..+....+++.++|+|..+..+.
T Consensus 153 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~g~~r~l~~~l 204 (226)
T 2chg_A 153 CAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (226)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CceeecCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 23689999999999999988764322221 13557778899999999655443
No 17
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.17 E-value=5.7e-10 Score=106.01 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=99.6
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-ccc-ceeeehhhhhhccCCHHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FEA-SSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~-~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
....++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+... +.. .+.+. .+...+...+ ..
T Consensus 19 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~i-~~ 91 (323)
T 1sxj_B 19 VLSDIVGNKETIDRLQQIAKDGN--MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGIDVV-RN 91 (323)
T ss_dssp SGGGCCSCTHHHHHHHHHHHSCC--CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSHHHH-HT
T ss_pred CHHHHHCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccChHHH-HH
Confidence 44679999999999999987543 2338899999999999999999875332 221 22222 1111121111 11
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHH-ccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCccccccc-----------
Q 045345 190 LLSELLKLPDTSTWNVYDGLKMIGSRL-RYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLLMTH----------- 252 (445)
Q Consensus 190 il~~l~~~~~~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl~t~----------- 252 (445)
++..+.... ..+ .+++.+||+||++.. ...+.+ +..... +..++.++
T Consensus 92 ~~~~~~~~~---------------~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~-~~~~il~~~~~~~l~~~l~ 155 (323)
T 1sxj_B 92 QIKHFAQKK---------------LHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSN-STRFAFACNQSNKIIEPLQ 155 (323)
T ss_dssp HHHHHHHBC---------------CCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTT-TEEEEEEESCGGGSCHHHH
T ss_pred HHHHHHhcc---------------ccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCC-CceEEEEeCChhhchhHHH
Confidence 111111000 001 345889999999753 222222 211111 11111111
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHH-HHHHHH
Q 045345 253 GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLA-LKVLGS 309 (445)
Q Consensus 253 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~~~ 309 (445)
.....+++.+++.++..+++...+....... ..+.+..+++.++|.|.. +..+..
T Consensus 156 sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 156 SQCAILRYSKLSDEDVLKRLLQIIKLEDVKY--TNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhceEEeecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 1124789999999999999988763222111 135577899999999954 444433
No 18
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.01 E-value=4.2e-09 Score=100.16 Aligned_cols=175 Identities=15% Similarity=0.133 Sum_probs=99.1
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLL 191 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il 191 (445)
...+++|++..++.+..++..+. .+.+.|+|++|+|||++|+.+++.+........++..- .+...+...+ ...+
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~~--~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~--~~~~~~~~~~-~~~~ 97 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTGS--MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN--ASDERGINVI-REKV 97 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHTC--CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE--TTCHHHHHTT-HHHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcCC--CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee--ccccCchHHH-HHHH
Confidence 34679999999999999888543 33488999999999999999998753322111122100 1100000000 0011
Q ss_pred HHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHhc---CCCCCcCcccccccC-----------CC
Q 045345 192 SELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESLA---GKHEWFDEHLLMTHG-----------VD 255 (445)
Q Consensus 192 ~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l~---~~~~~~~~~vl~t~~-----------~~ 255 (445)
....... ....+++.++|+||++.. .....+. ..... +..++.++. ..
T Consensus 98 ~~~~~~~---------------~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~-~~~~i~~~~~~~~l~~~l~sr~ 161 (327)
T 1iqp_A 98 KEFARTK---------------PIGGASFKIIFLDEADALTQDAQQALRRTMEMFSS-NVRFILSCNYSSKIIEPIQSRC 161 (327)
T ss_dssp HHHHHSC---------------CGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHTE
T ss_pred HHHHhhC---------------CcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCC-CCeEEEEeCCccccCHHHHhhC
Confidence 1100000 001256789999999743 3333332 11111 112222211 12
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
..+++.+++.++..+++...+...... -..+....|++.++|.|..+..+..
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~~~~~l~ 213 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLE--LTEEGLQAILYIAEGDMRRAINILQ 213 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCE--ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence 368999999999999998776433221 1235677899999999996654443
No 19
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=98.93 E-value=1.1e-08 Score=97.91 Aligned_cols=248 Identities=18% Similarity=0.119 Sum_probs=142.0
Q ss_pred ccccccccchhHHHHHhhhccC---CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE---PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....++|++..++.+..++... ....+.|.|+|++|+|||+||+.+++.....|. .+. ........
T Consensus 27 ~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~---~~~----~~~~~~~~---- 95 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK---TTA----APMIEKSG---- 95 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---EEE----GGGCCSHH----
T ss_pred CHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eec----chhccchh----
Confidence 4567999999999998888642 233456889999999999999999887654432 111 00001111
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHH--ccCcEEEEEcCCCCH--HHHHHhc---CCCC------------C--cC--
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRL--RYRKVLLIVDAAFDL--KQLESLA---GKHE------------W--FD-- 245 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l--~~~~~LlVlDdv~~~--~~l~~l~---~~~~------------~--~~-- 245 (445)
.+...+ ..++.+|+||+++.. .....+. .... . .+
T Consensus 96 ----------------------~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (338)
T 3pfi_A 96 ----------------------DLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP 153 (338)
T ss_dssp ----------------------HHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC
T ss_pred ----------------------HHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC
Confidence 011111 235678899998743 2222221 1110 0 00
Q ss_pred -ccccc------------ccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhC
Q 045345 246 -EHLLM------------THGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLY 312 (445)
Q Consensus 246 -~~vl~------------t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~ 312 (445)
..++. ..+....+.+++++.++..+++...+...... -..+....+++.+.|+|-.+..+...+.
T Consensus 154 ~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~ 231 (338)
T 3pfi_A 154 KFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKT--CEEKAALEIAKRSRSTPRIALRLLKRVR 231 (338)
T ss_dssp CCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCE--ECHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 11111 11334679999999999999998776332211 2235677788899999976654443321
Q ss_pred ------CC---CHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC-CCCCHHHHHHHHHhCCCCchhc
Q 045345 313 ------GK---TTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFY-RGEDRDYVTKIIDYCDFDPVIG 382 (445)
Q Consensus 313 ------~~---~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~-~~~~~~~l~~~~~~~~~~~~~~ 382 (445)
+. +.+.....+ ..+..+...++..+++++..++-.. ...+...+...++.........
T Consensus 232 ~~a~~~~~~~i~~~~~~~~~------------~~~~~~~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~ 299 (338)
T 3pfi_A 232 DFADVNDEEIITEKRANEAL------------NSLGVNELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDV 299 (338)
T ss_dssp HHHHHTTCSEECHHHHHHHH------------HHHTCCTTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHT
T ss_pred HHHHhhcCCccCHHHHHHHH------------HHhCCcccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHH
Confidence 11 122222222 1233344556666677776666552 2255777777665433233334
Q ss_pred HH-HHhhcCceEEccCCeEEccHHH
Q 045345 383 IR-VLIDKSLIEISNGNRLRMHNLL 406 (445)
Q Consensus 383 l~-~L~~~sLi~~~~~~~~~mHdlv 406 (445)
++ .|++.++|.....|++....-+
T Consensus 300 l~~~l~~~gli~~~~~g~~~t~~~~ 324 (338)
T 3pfi_A 300 IEPYLLANGYIERTAKGRIASAKSY 324 (338)
T ss_dssp THHHHHHTTSEEEETTEEEECHHHH
T ss_pred HhHHHHHcCceecCCCcccccHHHH
Confidence 55 8999999998877776544433
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=98.90 E-value=4.8e-08 Score=92.77 Aligned_cols=245 Identities=16% Similarity=0.068 Sum_probs=139.8
Q ss_pred ccccccccchhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
...+|+|++..++.+...+.. .......+.|+|++|+|||+||+++++.....| .++. .........
T Consensus 10 ~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~---~~~~----~~~~~~~~~--- 79 (324)
T 1hqc_A 10 TLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPGD--- 79 (324)
T ss_dssp STTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---EEEC----TTTCCSHHH---
T ss_pred cHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---EEEe----ccccCChHH---
Confidence 456799999999998887753 112235688999999999999999998764322 2222 111111111
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHhc---CCC--------CC---------cCc
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESLA---GKH--------EW---------FDE 246 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l~---~~~--------~~---------~~~ 246 (445)
+...+. .. ..++.+|+||+++.. .....+. ... .. .+.
T Consensus 80 -l~~~l~------------------~~-~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 139 (324)
T 1hqc_A 80 -LAAILA------------------NS-LEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF 139 (324)
T ss_dssp -HHHHHT------------------TT-CCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCC
T ss_pred -HHHHHH------------------Hh-ccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCE
Confidence 111110 00 135668999999753 2222221 100 00 001
Q ss_pred ccccc------------cCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhhCCC
Q 045345 247 HLLMT------------HGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFLYGK 314 (445)
Q Consensus 247 ~vl~t------------~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L~~~ 314 (445)
.++.+ .+....+.+.+++.++..+++...+...... -..+....++++++|+|..+..+...+...
T Consensus 140 ~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~ 217 (324)
T 1hqc_A 140 TLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVR--ITEEAALEIGRRSRGTMRVAKRLFRRVRDF 217 (324)
T ss_dssp EEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHSCSCHHHHHHHHHHHTTT
T ss_pred EEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCC--CCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 11111 1233578999999999999998876432222 123567889999999999887776554321
Q ss_pred ---------CHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccC--CCCCHHHHHHHHHhCCCCchhcH
Q 045345 315 ---------TTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFY--RGEDRDYVTKIIDYCDFDPVIGI 383 (445)
Q Consensus 315 ---------~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~--~~~~~~~l~~~~~~~~~~~~~~l 383 (445)
+.+.....+.. +..+...|+..++.++..+.... +++....+...++.........+
T Consensus 218 a~~~~~~~i~~~~~~~~~~~------------~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l 285 (324)
T 1hqc_A 218 AQVAGEEVITRERALEALAA------------LGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVH 285 (324)
T ss_dssp STTTSCSCCCHHHHHHHHHH------------HTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHT
T ss_pred HHHhcCCCCCHHHHHHHHHH------------hcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHH
Confidence 22222222222 22334567777778877666443 33567777766543222222223
Q ss_pred HH-HhhcCceEEccCCeE
Q 045345 384 RV-LIDKSLIEISNGNRL 400 (445)
Q Consensus 384 ~~-L~~~sLi~~~~~~~~ 400 (445)
+. +++.++|.....|+.
T Consensus 286 ~~~~i~~~li~~~~~g~~ 303 (324)
T 1hqc_A 286 EPYLIRQGLLKRTPRGRV 303 (324)
T ss_dssp HHHHHHTTSEEEETTEEE
T ss_pred hHHHHHhcchhcCCccce
Confidence 33 888999987756654
No 21
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=98.83 E-value=1.1e-07 Score=89.93 Aligned_cols=171 Identities=15% Similarity=0.139 Sum_probs=99.6
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc-cCccccc-eeeehhhhhhccCCHHHHHH
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEFEAS-SFLANVREISEKGGLICLQK 188 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~-~~~~~~~~~~~~~~~~~l~~ 188 (445)
....+++|++..++.+..++..+ ..+.+.|+|++|+|||++|+.+++.+ ...+... +.+. .+...+
T Consensus 14 ~~~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~------ 81 (319)
T 2chq_A 14 RTLDEVVGQDEVIQRLKGYVERK--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN----ASDERG------ 81 (319)
T ss_dssp SSGGGSCSCHHHHHHHHTTTTTT--CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE----TTSTTC------
T ss_pred CCHHHHhCCHHHHHHHHHHHhCC--CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe----CccccC------
Confidence 34567999999999999998753 23348899999999999999999875 2222211 1122 111000
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHH--H-ccCcEEEEEcCCCCH--HHHHHhcCCCCCc--CcccccccC--------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSR--L-RYRKVLLIVDAAFDL--KQLESLAGKHEWF--DEHLLMTHG-------- 253 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~--l-~~~~~LlVlDdv~~~--~~l~~l~~~~~~~--~~~vl~t~~-------- 253 (445)
..........+... + .+++.++|+|+++.. ...+.+....... +..++.++.
T Consensus 82 -------------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 82 -------------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp -------------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred -------------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 01111111111100 1 256789999999743 3333333221111 122222111
Q ss_pred ---CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 254 ---VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 254 ---~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
....+++.+++.++..+++...+....... ..+....+++.++|.+..+....
T Consensus 149 l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~l 204 (319)
T 2chq_A 149 IQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKI--TEDGLEALIYISGGDFRKAINAL 204 (319)
T ss_dssp HHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCB--CHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 124689999999999999987764333221 23557788899999998655443
No 22
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.2e-08 Score=94.14 Aligned_cols=158 Identities=14% Similarity=0.101 Sum_probs=94.5
Q ss_pred ccccccchhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc-----c--cceeeehhhhhhccCCHH
Q 045345 114 KDLVGMDSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF-----E--ASSFLANVREISEKGGLI 184 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f-----~--~~~~~~~~~~~~~~~~~~ 184 (445)
..+.||+.+++.|...|.. .....+.+.|+|++|+|||++++.+++.+.... + ..+.+. .....+..
T Consensus 20 ~~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~ 95 (318)
T 3te6_A 20 ELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMD 95 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--H
T ss_pred cccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHH
Confidence 3489999999999887764 233456788999999999999999999864321 1 123343 23345566
Q ss_pred HHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH---ccCcEEEEEcCCCCH---HHHHHhcC----CCCCc-------C--
Q 045345 185 CLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL---RYRKVLLIVDAAFDL---KQLESLAG----KHEWF-------D-- 245 (445)
Q Consensus 185 ~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l---~~~~~LlVlDdv~~~---~~l~~l~~----~~~~~-------~-- 245 (445)
.+...|+.++.+.......... ....+...+ .+++++++||+++.. +.+-.+.. ....+ +
T Consensus 96 ~~~~~I~~~L~g~~~~~~~~~~-~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 96 ALYEKIWFAISKENLCGDISLE-ALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp HHHHHHHHHHSCCC--CCCCHH-HHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred HHHHHHHHHhcCCCCCchHHHH-HHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 7778888888654322222222 222222222 457899999999854 33333321 11100 0
Q ss_pred --cccc---cccCCC-ceEEcCCCCHHHHHHHHHHhh
Q 045345 246 --EHLL---MTHGVD-EVHKLKVLHDDEALQLFCKQA 276 (445)
Q Consensus 246 --~~vl---~t~~~~-~~~~l~~L~~~ea~~Lf~~~a 276 (445)
...+ +.++.. ..+.+++++.+|-.+++..++
T Consensus 175 ~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl 211 (318)
T 3te6_A 175 TIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRL 211 (318)
T ss_dssp CCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHH
T ss_pred cchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHH
Confidence 0011 111222 468899999999999888776
No 23
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.73 E-value=2e-07 Score=90.22 Aligned_cols=181 Identities=15% Similarity=0.113 Sum_probs=100.5
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcccc---ceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEA---SSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~---~~~~~~~~~~~~~~~~~~l~~ 188 (445)
...+++|++..++.+...+..+. ....+.|+|++|+|||++|+.+++.+...... .+... ....
T Consensus 14 ~~~~~vg~~~~~~~L~~~l~~~~-~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~------------~~~~ 80 (373)
T 1jr3_A 14 TFADVVGQEHVLTALANGLSLGR-IHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVC------------DNCR 80 (373)
T ss_dssp STTTSCSCHHHHHHHHHHHHHTC-CCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSS------------HHHH
T ss_pred chhhccCcHHHHHHHHHHHHhCC-CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCccc------------HHHH
Confidence 34569999999999999887533 23477899999999999999999875432210 00000 0000
Q ss_pred HHHHH----HhCCCCCCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCcccc-ccc-
Q 045345 189 QLLSE----LLKLPDTSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLL-MTH- 252 (445)
Q Consensus 189 ~il~~----l~~~~~~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl-~t~- 252 (445)
.+... +...........+ ....+...+ .+++.+||+||++.. ...+.+ +..... +..++ ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~-~~~~Il~~~~ 158 (373)
T 1jr3_A 81 EIEQGRFVDLIEIDAASRTKVE-DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPE-HVKFLLATTD 158 (373)
T ss_dssp HHHTSCCSSCEEEETTCSCCSS-CHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCS-SEEEEEEESC
T ss_pred HHhccCCCceEEecccccCCHH-HHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCC-ceEEEEEeCC
Confidence 01000 0000000000111 122222322 246789999999743 333333 222111 11111 111
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
.....+++.+++.++..+++...+...+... ..+.+..|++.++|.|..+..+..
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~--~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH--EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCB--CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 1225689999999999999987653222111 134577899999999998766543
No 24
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.65 E-value=1.7e-07 Score=87.31 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=95.2
Q ss_pred cccccccccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE 179 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 179 (445)
....+++|.+..++.|...+... ....+-+.|+|++|+|||+||+++++.....|-. +. ......
T Consensus 14 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~---v~-~~~~~~ 89 (285)
T 3h4m_A 14 VRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIR---VV-GSELVK 89 (285)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEE---EE-GGGGCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee-hHHHHH
Confidence 44578999999999998877431 1234568899999999999999999876544321 11 111100
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhh-hHHHHHHHHccCcEEEEEcCCCCH----------------HHHHHhcCC--
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYD-GLKMIGSRLRYRKVLLIVDAAFDL----------------KQLESLAGK-- 240 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~-~~~~l~~~l~~~~~LlVlDdv~~~----------------~~l~~l~~~-- 240 (445)
. ....... ....+.......+.+|+||+++.. ..+..++..
T Consensus 90 ~--------------------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~ 149 (285)
T 3h4m_A 90 K--------------------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMD 149 (285)
T ss_dssp C--------------------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHH
T ss_pred h--------------------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhh
Confidence 0 0001111 112223333456789999999653 112222211
Q ss_pred --CCCcCccccccc--------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCC-ChHH
Q 045345 241 --HEWFDEHLLMTH--------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGG-LPLA 303 (445)
Q Consensus 241 --~~~~~~~vl~t~--------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLa 303 (445)
....+..++.++ +....+.++.++.++..+++...+........ .....++..+.| .|-.
T Consensus 150 ~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~---~~~~~l~~~~~g~~~~~ 226 (285)
T 3h4m_A 150 GFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLAED---VNLEEIAKMTEGCVGAE 226 (285)
T ss_dssp TTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBCTT---CCHHHHHHHCTTCCHHH
T ss_pred CCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCCCc---CCHHHHHHHcCCCCHHH
Confidence 110011222222 23356899999999999999887643222111 114556777766 4545
Q ss_pred HHHH
Q 045345 304 LKVL 307 (445)
Q Consensus 304 l~~~ 307 (445)
|..+
T Consensus 227 i~~l 230 (285)
T 3h4m_A 227 LKAI 230 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5544
No 25
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.64 E-value=4.5e-07 Score=91.82 Aligned_cols=183 Identities=14% Similarity=0.080 Sum_probs=98.3
Q ss_pred ccccccccchhHHHHHhhhccC---------------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhh
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE---------------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVRE 176 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~---------------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~ 176 (445)
...+++|++..++.|..++... ....+.+.|+|++|+|||+||+.+++.+.. + .+.+.
T Consensus 37 ~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--~-~i~in---- 109 (516)
T 1sxj_A 37 NLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--D-ILEQN---- 109 (516)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC--E-EEEEC----
T ss_pred CHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC--C-EEEEe----
Confidence 4567999999999999988641 012468899999999999999999987732 1 12222
Q ss_pred hhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--------HHHHHhcCCCCC-c---
Q 045345 177 ISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--------KQLESLAGKHEW-F--- 244 (445)
Q Consensus 177 ~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--------~~l~~l~~~~~~-~--- 244 (445)
.+...... .....+....... .....-..... .....+++.+|+||+++.. ..+..++..... +
T Consensus 110 ~s~~~~~~-~~~~~i~~~~~~~--~~~~~~~~~~~-~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~~~~iIli 185 (516)
T 1sxj_A 110 ASDVRSKT-LLNAGVKNALDNM--SVVGYFKHNEE-AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILI 185 (516)
T ss_dssp TTSCCCHH-HHHHTGGGGTTBC--CSTTTTTC-----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHCSSCEEEE
T ss_pred CCCcchHH-HHHHHHHHHhccc--cHHHHHhhhhh-hhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhcCCCEEEE
Confidence 12212211 1222222111100 00000000000 0012357889999999743 233333321110 0
Q ss_pred -----CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHH-HHHH
Q 045345 245 -----DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLA-LKVL 307 (445)
Q Consensus 245 -----~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLa-l~~~ 307 (445)
...+..-.+....+.+++++.++..+.+...+.......+ .+....|++.++|.+.. +..+
T Consensus 186 ~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~--~~~l~~la~~s~GdiR~~i~~L 252 (516)
T 1sxj_A 186 CNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLD--PNVIDRLIQTTRGDIRQVINLL 252 (516)
T ss_dssp ESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCC--TTHHHHHHHHTTTCHHHHHHHH
T ss_pred EcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHcCCcHHHHHHHH
Confidence 0111111123456899999999999988776643221111 13467788999996554 4443
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.64 E-value=4.5e-07 Score=87.34 Aligned_cols=192 Identities=14% Similarity=0.088 Sum_probs=107.4
Q ss_pred hhhhHhhhhhcccCCCCCCCCCccccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHH
Q 045345 88 ESEFIVDIVKDILEMPSKIPAKSEIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVV 157 (445)
Q Consensus 88 e~~~i~~iv~~v~~~p~~~~~~~~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~ 157 (445)
+..+++.|...+... .+ +....+++|.+..++.|.+.+.. .....+.|.|+|++|+|||+||+++
T Consensus 63 ~~~~~~~i~~~i~~~--~~---~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~ai 137 (357)
T 3d8b_A 63 EPKMIELIMNEIMDH--GP---PVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCI 137 (357)
T ss_dssp CHHHHHHHHHHTBCC--SC---CCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHH
T ss_pred ChHHHHHHHhhcccC--CC---CCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHH
Confidence 556666777776655 32 33456799999999999887642 1123457889999999999999999
Q ss_pred HhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHccCcEEEEEcCCCCH-----
Q 045345 158 YDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKM-IGSRLRYRKVLLIVDAAFDL----- 231 (445)
Q Consensus 158 ~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~----- 231 (445)
+......| +.+. ....... ........... +......++.+|+||+++..
T Consensus 138 a~~~~~~~---~~i~-~~~l~~~--------------------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~ 193 (357)
T 3d8b_A 138 ASQSGATF---FSIS-ASSLTSK--------------------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRG 193 (357)
T ss_dssp HHHTTCEE---EEEE-GGGGCCS--------------------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC--
T ss_pred HHHcCCeE---EEEe-hHHhhcc--------------------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCC
Confidence 98764332 1222 1111100 00001111111 22222356789999998543
Q ss_pred ------------HHHHHhcCCCCC--cCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchH
Q 045345 232 ------------KQLESLAGKHEW--FDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKE 285 (445)
Q Consensus 232 ------------~~l~~l~~~~~~--~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~ 285 (445)
..+..+.+.... .+..++.++ +....+.+...+.++..+++...+.......
T Consensus 194 ~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l-- 271 (357)
T 3d8b_A 194 DGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCL-- 271 (357)
T ss_dssp ----CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCC--
T ss_pred CCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCc--
Confidence 112222211100 011122111 3345678999999999888877663322111
Q ss_pred HHHHHHHHHHHhCC-ChHHHHHHHHh
Q 045345 286 YEQLSKYVVKYSGG-LPLALKVLGSF 310 (445)
Q Consensus 286 ~~~~~~~i~~~~~G-lPLal~~~~~~ 310 (445)
..+....|++.+.| .+-.|..+...
T Consensus 272 ~~~~l~~la~~t~G~s~~dl~~l~~~ 297 (357)
T 3d8b_A 272 SEEEIEQIVQQSDAFSGADMTQLCRE 297 (357)
T ss_dssp CHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 12456778888888 55666666543
No 27
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.60 E-value=7.5e-07 Score=81.69 Aligned_cols=172 Identities=17% Similarity=0.147 Sum_probs=92.0
Q ss_pred cccccccchhHHHHHhhhcc---C-------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCC
Q 045345 113 FKDLVGMDSCWNTLRFLMDK---E-------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGG 182 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~---~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 182 (445)
..+++|.+..++.|.+++.. . ....+-+.|+|++|+|||+||+++++.....| +.+. ........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~---~~~~-~~~~~~~~- 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPF---LAMA-GAEFVEVI- 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCE---EEEE-TTTTSSSS-
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCE---EEec-hHHHHhhc-
Confidence 46789999988888765431 1 12235678999999999999999998764432 1121 11110000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH-----------------HHHHHhc----CC-
Q 045345 183 LICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL-----------------KQLESLA----GK- 240 (445)
Q Consensus 183 ~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-----------------~~l~~l~----~~- 240 (445)
...........+.......+.+|+||+++.. ..+..++ ..
T Consensus 80 ------------------~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 141 (262)
T 2qz4_A 80 ------------------GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMG 141 (262)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCC
T ss_pred ------------------cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcC
Confidence 0000111112223333456889999999864 1122222 10
Q ss_pred -CCCc------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHH
Q 045345 241 -HEWF------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKV 306 (445)
Q Consensus 241 -~~~~------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~ 306 (445)
.... +..++...+....+.++.++.++-.+++...+....... ........+++.+.|.+- .|..
T Consensus 142 ~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~-~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 142 TTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQ-SSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp TTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCB-THHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCc-chhhHHHHHHHHCCCCCHHHHHH
Confidence 0100 111111114456788999999999999987763322221 112234677888877754 4544
Q ss_pred HH
Q 045345 307 LG 308 (445)
Q Consensus 307 ~~ 308 (445)
+.
T Consensus 221 l~ 222 (262)
T 2qz4_A 221 IC 222 (262)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 28
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=98.58 E-value=9.6e-07 Score=85.33 Aligned_cols=51 Identities=20% Similarity=0.220 Sum_probs=39.1
Q ss_pred cccccccchhHHHHHh---hhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 113 FKDLVGMDSCWNTLRF---LMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~---~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...|+|++..++.+.. .+..+....+.+.|+|++|+|||+||+.+++.+..
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred hhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 5789999999777544 44433322358889999999999999999998754
No 29
>3ub2_A TOLL/interleukin-1 receptor domain-containing ADA protein; TIR domain, TLRS adaptor, immune system; 2.40A {Homo sapiens} PDB: 3ub3_A 3ub4_A 2y92_A
Probab=98.58 E-value=1e-08 Score=85.12 Aligned_cols=67 Identities=15% Similarity=0.280 Sum_probs=46.5
Q ss_pred CCCCChhhHHHHHHHHhchhcCCCccEEEeeeccCCC----cccccccchHHHHHHHhHHhhhhcHHHHHHHHHHH
Q 045345 1 NYAYSTWCLDELVEIVELKSTNGHQQLIFPIFYDVEP----TVVRKQTASFGEAFSKHEETFRMNIEKVQKWRDAL 72 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~~~~~~~~~v~Pvfy~v~p----s~vr~~~~~~~~~~~~~~~~~~~~~~~~~~w~~al 72 (445)
||++|.||+.||..++.|...+. ..||||||+|++ ..+|........ .+...|....+.|.+|++||
T Consensus 75 ~y~~S~wc~~El~~al~~~~~~~--~~vIpv~~~v~~~~lp~~Lr~~~~id~~---~~d~~f~~l~~~v~~~~~~~ 145 (146)
T 3ub2_A 75 GFLQDPWCKYQMLQALTEAPGAE--GCTIPLLSGLSRAAYPPELRFMYYVDGR---GPDGGFRQVKEAVMRYLQTL 145 (146)
T ss_dssp HHHHCHHHHHHHHHHHHTSSSSS--SEEEEEECSCCGGGSCGGGGGSCCEETT---SGGGGHHHHHHHHHHHHTTC
T ss_pred ccccCHHHHHHHHHHHHHHhhcC--CcEEEEEcCCChhhCCHHHhCeeeeecc---ChHhhHHHHHHHHHHHHHhc
Confidence 68999999999999999874444 467799999994 455665432221 23344444456788888765
No 30
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.57 E-value=3e-06 Score=81.22 Aligned_cols=183 Identities=13% Similarity=0.087 Sum_probs=98.5
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc--cccceeeehhhhhhccCCHHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE--FEASSFLANVREISEKGGLICLQKQ 189 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~--f~~~~~~~~~~~~~~~~~~~~l~~~ 189 (445)
....++|++..++.+...+..+.. +.+.|+|++|+||||+|+.+++.+... +...+...+ .+...+...+. +
T Consensus 35 ~~~~i~g~~~~~~~l~~~l~~~~~--~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~~~-~ 108 (353)
T 1sxj_D 35 NLDEVTAQDHAVTVLKKTLKSANL--PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN---ASDERGISIVR-E 108 (353)
T ss_dssp STTTCCSCCTTHHHHHHHTTCTTC--CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC---SSSCCCHHHHT-T
T ss_pred CHHHhhCCHHHHHHHHHHHhcCCC--CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc---cccccchHHHH-H
Confidence 346799999999999999875432 238899999999999999999875321 221111111 11112222221 1
Q ss_pred HHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCcccccccC----------C
Q 045345 190 LLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLLMTHG----------V 254 (445)
Q Consensus 190 il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl~t~~----------~ 254 (445)
.+.............. .....-...+-+|++|+++.. .....+ +........-++++.. .
T Consensus 109 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 109 KVKNFARLTVSKPSKH-----DLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp HHHHHHHSCCCCCCTT-----HHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHH
T ss_pred HHHHHhhhcccccchh-----hcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhcc
Confidence 1111111100000000 000111235579999998743 222222 2111110111222211 1
Q ss_pred CceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 255 DEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 255 ~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...+.+.+++.++..+.+...+....... ..+....|++.++|.|..+..+
T Consensus 184 ~~~i~~~~~~~~~~~~~l~~~~~~~~~~i--~~~~l~~l~~~~~G~~r~~~~~ 234 (353)
T 1sxj_D 184 CSKFRFKALDASNAIDRLRFISEQENVKC--DDGVLERILDISAGDLRRGITL 234 (353)
T ss_dssp SEEEECCCCCHHHHHHHHHHHHHTTTCCC--CHHHHHHHHHHTSSCHHHHHHH
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHHHHH
Confidence 13688999999999999987763322211 1356788999999999875443
No 31
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.57 E-value=1.3e-07 Score=85.40 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=91.4
Q ss_pred cccccccccc---hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHH
Q 045345 111 EIFKDLVGMD---SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQ 187 (445)
Q Consensus 111 ~~~~~~vGr~---~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~ 187 (445)
....+|+|.+ ..++.+..+.... ..+.+.|+|++|+|||+||+.+++..........++.. ...... +
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~-~~~~~~--~---- 95 (242)
T 3bos_A 25 ETFTSYYPAAGNDELIGALKSAASGD--GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPL-GIHASI--S---- 95 (242)
T ss_dssp CSTTTSCC--CCHHHHHHHHHHHHTC--SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEG-GGGGGS--C----
T ss_pred CChhhccCCCCCHHHHHHHHHHHhCC--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH-HHHHHH--H----
Confidence 3456788743 5566666665532 35678899999999999999999876443333445441 111100 0
Q ss_pred HHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH--H--HHHhcCCCCCc---C-cccccccC------
Q 045345 188 KQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK--Q--LESLAGKHEWF---D-EHLLMTHG------ 253 (445)
Q Consensus 188 ~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~--l~~l~~~~~~~---~-~~vl~t~~------ 253 (445)
.... ..+ .++.+|||||++... . .+.+....... + ..++.++.
T Consensus 96 ------------------~~~~----~~~-~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~ 152 (242)
T 3bos_A 96 ------------------TALL----EGL-EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEA 152 (242)
T ss_dssp ------------------GGGG----TTG-GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTT
T ss_pred ------------------HHHH----Hhc-cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHH
Confidence 0000 011 345688999986431 1 11111000000 1 11222111
Q ss_pred ------------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHH
Q 045345 254 ------------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGS 309 (445)
Q Consensus 254 ------------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~ 309 (445)
....+++++++.++..+++...+...... -..+....+++.++|++..+..+..
T Consensus 153 ~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~l~~~~~g~~r~l~~~l~ 218 (242)
T 3bos_A 153 GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQ--LPEDVGRFLLNRMARDLRTLFDVLD 218 (242)
T ss_dssp TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHccCCHHHHHHHHH
Confidence 11568999999999999998776322211 1235577888899999877665443
No 32
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.56 E-value=2.7e-07 Score=80.03 Aligned_cols=47 Identities=15% Similarity=0.196 Sum_probs=40.0
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRR--TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHhcC--CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 457999999999999988753 34567899999999999999999875
No 33
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=98.55 E-value=5e-07 Score=89.45 Aligned_cols=168 Identities=17% Similarity=0.169 Sum_probs=96.1
Q ss_pred ccccccccchhH---HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCW---NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l---~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....+||.+..+ ..|...+..+ ..+.+.|+|++|+||||||+.+++.....|....- ...+...+.
T Consensus 24 ~l~~ivGq~~~~~~~~~L~~~i~~~--~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a--------~~~~~~~ir- 92 (447)
T 3pvs_A 24 NLAQYIGQQHLLAAGKPLPRAIEAG--HLHSMILWGPPGTGKTTLAEVIARYANADVERISA--------VTSGVKEIR- 92 (447)
T ss_dssp STTTCCSCHHHHSTTSHHHHHHHHT--CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEET--------TTCCHHHHH-
T ss_pred CHHHhCCcHHHHhchHHHHHHHHcC--CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEe--------ccCCHHHHH-
Confidence 446799999888 6777777743 34678899999999999999999877554422110 011222111
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH--HHHHhcCCCCCcCcccc-ccc------------C
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK--QLESLAGKHEWFDEHLL-MTH------------G 253 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~--~l~~l~~~~~~~~~~vl-~t~------------~ 253 (445)
.++.. .......+++.+|+||+++... +.+.++.........++ .|+ .
T Consensus 93 ~~~~~-----------------a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v~lI~att~n~~~~l~~aL~s 155 (447)
T 3pvs_A 93 EAIER-----------------ARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLS 155 (447)
T ss_dssp HHHHH-----------------HHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSCEEEEEESSCGGGSSCHHHHT
T ss_pred HHHHH-----------------HHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCceEEEecCCCCcccccCHHHhC
Confidence 11111 0011124578899999997542 22222111000001111 111 1
Q ss_pred CCceEEcCCCCHHHHHHHHHHhhcCCC-----CCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 254 VDEVHKLKVLHDDEALQLFCKQAFKTN-----QPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 254 ~~~~~~l~~L~~~ea~~Lf~~~a~~~~-----~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...++.+++++.++..+++...+.... ....-..+....|++.++|.+..+..+
T Consensus 156 R~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~ 214 (447)
T 3pvs_A 156 RARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNT 214 (447)
T ss_dssp TEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHH
T ss_pred ceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHH
Confidence 124688999999999999987763211 111223456778888899998866544
No 34
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.54 E-value=3e-07 Score=79.41 Aligned_cols=48 Identities=15% Similarity=0.149 Sum_probs=40.3
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++||+.+++.+.+.+... ..+.+.|+|++|+|||+||+.+++.+.
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~--~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRR--TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCC--CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999988752 345678999999999999999998753
No 35
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.44 E-value=6.9e-06 Score=76.78 Aligned_cols=174 Identities=16% Similarity=0.135 Sum_probs=95.2
Q ss_pred ccccccccccchhHHHHHhhhccC----------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc
Q 045345 110 SEIFKDLVGMDSCWNTLRFLMDKE----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE 179 (445)
Q Consensus 110 ~~~~~~~vGr~~~l~~l~~~L~~~----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~ 179 (445)
+....+++|.+..++.|...+... ....+.+.|+|++|+|||+||++++......|- .+. ......
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~---~i~-~~~l~~ 92 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFL---NIS-AASLTS 92 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEE---EEE-STTTSS
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---Eee-HHHHhh
Confidence 344578999999999998876320 112457889999999999999999987644331 111 100000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHccCcEEEEEcCCCCH-------------HH----HHHhcCCC
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKM-IGSRLRYRKVLLIVDAAFDL-------------KQ----LESLAGKH 241 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~-------------~~----l~~l~~~~ 241 (445)
............ +.......+.+|+||+++.. .. +..+-+..
T Consensus 93 --------------------~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~ 152 (297)
T 3b9p_A 93 --------------------KYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLP 152 (297)
T ss_dssp --------------------SSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC
T ss_pred --------------------cccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccc
Confidence 000111111222 22223457789999999643 11 11111111
Q ss_pred CC---cCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHH
Q 045345 242 EW---FDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALK 305 (445)
Q Consensus 242 ~~---~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~ 305 (445)
.. ....++.++ +....+.++..+.++...++...+....... ..+....+++.+.|.+- .|.
T Consensus 153 ~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~--~~~~~~~la~~~~g~~~~~l~ 230 (297)
T 3b9p_A 153 GNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPL--DTEALRRLAKITDGYSGSDLT 230 (297)
T ss_dssp ------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCS--CHHHHHHHHHHTTTCCHHHHH
T ss_pred ccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHH
Confidence 00 011122111 2335677888888888888877653322111 12456778888888875 555
Q ss_pred HHHH
Q 045345 306 VLGS 309 (445)
Q Consensus 306 ~~~~ 309 (445)
.+..
T Consensus 231 ~l~~ 234 (297)
T 3b9p_A 231 ALAK 234 (297)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 36
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.44 E-value=2.4e-06 Score=82.05 Aligned_cols=188 Identities=14% Similarity=0.047 Sum_probs=95.4
Q ss_pred cccccccccchhHHHHHhhh-ccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhh--------------
Q 045345 111 EIFKDLVGMDSCWNTLRFLM-DKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVR-------------- 175 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L-~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~-------------- 175 (445)
....+++|.+..++.+..++ ..+. ... +.|+|++|+||||+|+.++..+.....+.+.+....
T Consensus 11 ~~~~~~vg~~~~~~~l~~~~~~~~~-~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1sxj_E 11 KSLNALSHNEELTNFLKSLSDQPRD-LPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVV 88 (354)
T ss_dssp CSGGGCCSCHHHHHHHHTTTTCTTC-CCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCE
T ss_pred CCHHHhcCCHHHHHHHHHHHhhCCC-CCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeee
Confidence 34567999999999999988 5332 223 899999999999999999885422211111111000
Q ss_pred ------hh--hcc-CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HH---HHHhcCCC
Q 045345 176 ------EI--SEK-GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQ---LESLAGKH 241 (445)
Q Consensus 176 ------~~--~~~-~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~---l~~l~~~~ 241 (445)
.. +.. ........+++..+...... .... .+ ..+.+++-++|||+++.. .. +..++...
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~-~l-s~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 89 SSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQV-----DFQD-SK-DGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ECSSEEEECCC----CCHHHHHHHHHHHTTTTC-------------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cccceEEecHhhcCCcchHHHHHHHHHHHHhccc-----cccc-cc-cccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 00 000 00000111222222110000 0000 00 002346779999999753 22 22222111
Q ss_pred CCcCcccccccC----------CCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHH
Q 045345 242 EWFDEHLLMTHG----------VDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLG 308 (445)
Q Consensus 242 ~~~~~~vl~t~~----------~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~ 308 (445)
.....-+++++. ....+++++++.++..+.+...+...+...+ ..+.+..|++.++|.+..+..+.
T Consensus 162 ~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 162 SKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLE-TKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp TTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEEC-CSHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHcCCCHHHHHHHH
Confidence 110122222221 1256899999999999999877632221111 02456788999999997665443
No 37
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.41 E-value=1.1e-05 Score=76.91 Aligned_cols=249 Identities=16% Similarity=0.143 Sum_probs=129.2
Q ss_pred ccccccccchhHHHHHhhhccC---CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE---PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~---~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
....++|.+..++.+...+..+ ......++|+|++|+||||||+.++..+...|.. .. ..+. ....
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~---~s--g~~~--~~~~---- 91 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV---TS--GPVL--VKQG---- 91 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE---EE--TTTC--CSHH----
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE---Ee--chHh--cCHH----
Confidence 3467899988888887766532 1223578999999999999999999876433211 00 0000 0000
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHhc---CCCC--------C----c----Ccc
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESLA---GKHE--------W----F----DEH 247 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l~---~~~~--------~----~----~~~ 247 (445)
+.. .+...+ .++.++++|+++.. ...+.+. .... . . ..-
T Consensus 92 ------------------~l~-~~~~~~-~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~ 151 (334)
T 1in4_A 92 ------------------DMA-AILTSL-ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPF 151 (334)
T ss_dssp ------------------HHH-HHHHHC-CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCC
T ss_pred ------------------HHH-HHHHHc-cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCe
Confidence 000 011111 13346677776532 1111111 0000 0 0 000
Q ss_pred cc-------------cccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHHHHhh---
Q 045345 248 LL-------------MTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVLGSFL--- 311 (445)
Q Consensus 248 vl-------------~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~~~~L--- 311 (445)
.+ ...+....+.+++.+.++-.+++.+.+...... -..+.+..|++.+.|.|..+.-+...+
T Consensus 152 ~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~--~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~ 229 (334)
T 1in4_A 152 TLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVE--IEDAAAEMIAKRSRGTPRIAIRLTKRVRDM 229 (334)
T ss_dssp EEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCC--BCHHHHHHHHHTSTTCHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCC--cCHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 00 011233457899999999999998776322211 223567889999999997654433222
Q ss_pred ---CC---CCHHHHHHHHHHHhcCCchhHHHHHHHhhcCCcHhHHHHHhhhhccCC--CCCHHHHHHHHHhCCCCchhcH
Q 045345 312 ---YG---KTTKEWESAPKRLERESENEILDILKISFDGLRETEKKIFLDIACFYR--GEDRDYVTKIIDYCDFDPVIGI 383 (445)
Q Consensus 312 ---~~---~~~~~w~~~l~~l~~~~~~~i~~~l~~s~~~L~~~~k~~~~~la~f~~--~~~~~~l~~~~~~~~~~~~~~l 383 (445)
.+ -+.+....++..+ ...-..|+...+.++..++-.+. +...+.+....+.+....+...
T Consensus 230 a~~~~~~~It~~~v~~al~~~------------~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~ 297 (334)
T 1in4_A 230 LTVVKADRINTDIVLKTMEVL------------NIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVY 297 (334)
T ss_dssp HHHHTCSSBCHHHHHHHHHHH------------TCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHT
T ss_pred HHHcCCCCcCHHHHHHHHHHh------------CCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHH
Confidence 11 1222222222222 11223566666666655543322 2555666655543211111222
Q ss_pred H-HHhhcCceEEccCCeEEccHH
Q 045345 384 R-VLIDKSLIEISNGNRLRMHNL 405 (445)
Q Consensus 384 ~-~L~~~sLi~~~~~~~~~mHdl 405 (445)
+ .|...++|+....|++-...-
T Consensus 298 ~~~l~~~g~i~~~~~gr~~~~~~ 320 (334)
T 1in4_A 298 EPYLLQAGFLARTPRGRIVTEKA 320 (334)
T ss_dssp HHHHHHTTSEEEETTEEEECHHH
T ss_pred HHHHHHcCCeecccccHHhhHHH
Confidence 2 789999999988888754433
No 38
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.39 E-value=5.8e-06 Score=78.30 Aligned_cols=173 Identities=13% Similarity=0.080 Sum_probs=94.6
Q ss_pred cccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhc-cCccccceeeehhhhhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEFEASSFLANVREISE 179 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~ 179 (445)
..-.+++|.+...+.|.+.+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+. ......
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~~i~-~~~l~~ 84 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-SSDLVS 84 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEE---EEEE-CCSSCC
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcE---EEEE-hHHHHh
Confidence 3456799999998888775521 11223678899999999999999999876 3222 1111 000000
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHH-HHHHccCcEEEEEcCCCCHH-------------HHHHhc----CCC
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMI-GSRLRYRKVLLIVDAAFDLK-------------QLESLA----GKH 241 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l-~~~l~~~~~LlVlDdv~~~~-------------~l~~l~----~~~ 241 (445)
............+ ......++.+|+||+++... ....++ +..
T Consensus 85 --------------------~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~ 144 (322)
T 1xwi_A 85 --------------------KWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG 144 (322)
T ss_dssp --------------------SSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS
T ss_pred --------------------hhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc
Confidence 0001111222222 22234578899999997541 111121 110
Q ss_pred -CCcCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCC-hHHHHHH
Q 045345 242 -EWFDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGL-PLALKVL 307 (445)
Q Consensus 242 -~~~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~ 307 (445)
...+..++.++ +....+.++..+.++-.+++..++....... .......|++.+.|. +-.|..+
T Consensus 145 ~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 145 VDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSL--TEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCC--CHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 00011122111 3446678899999998998887763322111 123466788888876 4445555
Q ss_pred HH
Q 045345 308 GS 309 (445)
Q Consensus 308 ~~ 309 (445)
..
T Consensus 223 ~~ 224 (322)
T 1xwi_A 223 VR 224 (322)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 39
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.38 E-value=1.9e-06 Score=85.29 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=93.6
Q ss_pred cccccc-ccchhH--HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccc--eeeehhhhhhccCCHHHH
Q 045345 112 IFKDLV-GMDSCW--NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEAS--SFLANVREISEKGGLICL 186 (445)
Q Consensus 112 ~~~~~v-Gr~~~l--~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~--~~~~~~~~~~~~~~~~~l 186 (445)
..+.|| |....+ ..+........ ....+.|+|++|+||||||+.+++.+...++.. +++. ...+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~-~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~ 171 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPG-RYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKF 171 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTT-SSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHH
Confidence 345677 655443 33333333222 256788999999999999999999875554333 3333 1112
Q ss_pred HHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH----HHHHhcCC----CCCcCcccccccC-----
Q 045345 187 QKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK----QLESLAGK----HEWFDEHLLMTHG----- 253 (445)
Q Consensus 187 ~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~l~~l~~~----~~~~~~~vl~t~~----- 253 (445)
..++...+... ....+...+..++-+|+|||++... ..+.+... ... +..+++++.
T Consensus 172 ~~~~~~~~~~~----------~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~-~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 172 LNDLVDSMKEG----------KLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDS-GKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHTT----------CHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTT-TCEEEEEESSCGGG
T ss_pred HHHHHHHHHcc----------cHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHC-CCeEEEEECCCHHH
Confidence 23333333311 1222344444467799999996321 11112110 000 122222221
Q ss_pred -------------CCceEEcCCCCHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 254 -------------VDEVHKLKVLHDDEALQLFCKQAFKTN-QPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 254 -------------~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...++.+++++.++-.+++...+.... ..+ .+....|++.++|++.-+.-+
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~---~e~l~~la~~~~gn~R~l~~~ 305 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELP---EEVLNFVAENVDDNLRRLRGA 305 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCC---TTHHHHHHHHCCSCHHHHHHH
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCC---HHHHHHHHHhcCCCHHHHHHH
Confidence 124578999999999999887763211 111 134667888889998765543
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.38 E-value=5.1e-06 Score=76.68 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.9
Q ss_pred ccccccchhHHHHHh-------hhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRF-------LMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~-------~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+.. .+.. .....+.+.|+|++|+|||+||+++++...
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 457888777666655 2321 233467889999999999999999998753
No 41
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.38 E-value=4.6e-06 Score=79.04 Aligned_cols=173 Identities=13% Similarity=0.073 Sum_probs=95.4
Q ss_pred cccccccccchhHHHHHhhhc----------cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMD----------KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~----------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
....+++|.+..++.|...+. ......+-+.|+|++|+|||+||+++++.....|- .+. ....
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~---~v~-~~~l--- 87 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SVS-SSDL--- 87 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEE---EEE-HHHH---
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEE---EEc-hHHH---
Confidence 345789999999999988772 11122456889999999999999999987644332 121 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHccCcEEEEEcCCCCHH-------------HHHHhc---CCC--
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLKM-IGSRLRYRKVLLIVDAAFDLK-------------QLESLA---GKH-- 241 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-------------~l~~l~---~~~-- 241 (445)
.... .......... +......++.+|+||+++... ....++ ...
T Consensus 88 ----------~~~~-------~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 150 (322)
T 3eie_A 88 ----------VSKW-------MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 150 (322)
T ss_dssp ----------HTTT-------GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT
T ss_pred ----------hhcc-------cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc
Confidence 0000 0111112222 222234577899999997431 011111 100
Q ss_pred CCcCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCC-ChHHHHHHH
Q 045345 242 EWFDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGG-LPLALKVLG 308 (445)
Q Consensus 242 ~~~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~ 308 (445)
...+..++.++ +....+.++..+.++-.++|..++........ ......|++.+.| .+-.|..+.
T Consensus 151 ~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~--~~~l~~la~~t~g~sg~di~~l~ 228 (322)
T 3eie_A 151 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLT--KEDYRTLGAMTEGYSGSDIAVVV 228 (322)
T ss_dssp SCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCC--HHHHHHHHHTTTTCCHHHHHHHH
T ss_pred cCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 00012222222 23456788889999999999887743322111 2345667777776 454555444
Q ss_pred H
Q 045345 309 S 309 (445)
Q Consensus 309 ~ 309 (445)
.
T Consensus 229 ~ 229 (322)
T 3eie_A 229 K 229 (322)
T ss_dssp H
T ss_pred H
Confidence 3
No 42
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=98.37 E-value=4.5e-06 Score=81.33 Aligned_cols=173 Identities=16% Similarity=0.144 Sum_probs=94.8
Q ss_pred cccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
....+++|.+..++.|...+.. .....+-+.|+|++|+|||+||++++......|- .+. .......
T Consensus 112 ~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~---~v~-~~~l~~~ 187 (389)
T 3vfd_A 112 VKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFF---NIS-AASLTSK 187 (389)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEE---EEC-SCCC---
T ss_pred CChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEE---Eee-HHHhhcc
Confidence 4457899999999999887731 0112357889999999999999999887543321 111 1000000
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHH-HHHHHHccCcEEEEEcCCCCH-------------HHHHHhc----CCCC
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLK-MIGSRLRYRKVLLIVDAAFDL-------------KQLESLA----GKHE 242 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~-~l~~~l~~~~~LlVlDdv~~~-------------~~l~~l~----~~~~ 242 (445)
. ......... .+.......+.+|+||+++.. .....++ +...
T Consensus 188 -------------~-------~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 247 (389)
T 3vfd_A 188 -------------Y-------VGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS 247 (389)
T ss_dssp ------------------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-
T ss_pred -------------c-------cchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc
Confidence 0 000011111 122222346689999999744 0111111 0000
Q ss_pred --CcCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChH-HHHHH
Q 045345 243 --WFDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPL-ALKVL 307 (445)
Q Consensus 243 --~~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPL-al~~~ 307 (445)
..+..++.++ +....+.+...+.++-.+++...+....... ..+....|++.+.|..- +|..+
T Consensus 248 ~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l--~~~~~~~la~~~~g~~~~~l~~L 325 (389)
T 3vfd_A 248 AGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPL--TQKELAQLARMTDGYSGSDLTAL 325 (389)
T ss_dssp ----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCS--CHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHcCCCCHHHHHHH
Confidence 0011112111 3345688999999999999887763322221 12356778888888554 66555
Q ss_pred HH
Q 045345 308 GS 309 (445)
Q Consensus 308 ~~ 309 (445)
..
T Consensus 326 ~~ 327 (389)
T 3vfd_A 326 AK 327 (389)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 43
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=98.36 E-value=7.9e-06 Score=80.97 Aligned_cols=173 Identities=15% Similarity=0.118 Sum_probs=94.4
Q ss_pred cccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhc-cCccccceeeehhhhhhc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLS-SHEFEASSFLANVREISE 179 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~-~~~f~~~~~~~~~~~~~~ 179 (445)
....+++|.+...+.|...+.. .....+-|.|+|++|+|||+||+++++.. ...| +.+. . +
T Consensus 131 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~---~~v~-~---~- 202 (444)
T 2zan_A 131 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTF---FSIS-S---S- 202 (444)
T ss_dssp CCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEE---EEEC-C---C-
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCE---EEEe-H---H-
Confidence 4457899999999998876521 11224678899999999999999999876 2222 1111 0 0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH-------------HHHHHhcCCCCCc--
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL-------------KQLESLAGKHEWF-- 244 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~-------------~~l~~l~~~~~~~-- 244 (445)
. +.....+. ..... ...+.......+.+|+||+++.. .....++.....+
T Consensus 203 --~-------l~~~~~g~---~~~~~---~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~ 267 (444)
T 2zan_A 203 --D-------LVSKWLGE---SEKLV---KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV 267 (444)
T ss_dssp ---------------------CCCTH---HHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC
T ss_pred --H-------HHhhhcch---HHHHH---HHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc
Confidence 0 01111111 11111 12222223467899999999854 1233333222111
Q ss_pred ---Cccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCC-hHHHHHHH
Q 045345 245 ---DEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGL-PLALKVLG 308 (445)
Q Consensus 245 ---~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~Gl-PLal~~~~ 308 (445)
+..++.++ +....+.++..+.++-.++|..++....... .......|++.+.|. +-.|..+.
T Consensus 268 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~la~~t~G~sgadl~~l~ 345 (444)
T 2zan_A 268 DNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSL--TEADFQELGRKTDGYSGADISIIV 345 (444)
T ss_dssp CCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEEC--CHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred CCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCC--CHHHHHHHHHHcCCCCHHHHHHHH
Confidence 11222121 3345678888888888888887763322111 123456678888774 44555444
No 44
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.33 E-value=6.7e-06 Score=77.93 Aligned_cols=168 Identities=10% Similarity=0.122 Sum_probs=86.9
Q ss_pred cccccc-ccchh--HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHH
Q 045345 112 IFKDLV-GMDSC--WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQK 188 (445)
Q Consensus 112 ~~~~~v-Gr~~~--l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~ 188 (445)
..++|| |.... ...+.............+.|+|++|+||||||+.+++.....-...+++. . ..+..
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~---------~~~~~ 78 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-A---------DDFAQ 78 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-H---------HHHHH
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-H---------HHHHH
Confidence 345676 54333 34444544433223457889999999999999999987633211233333 1 11222
Q ss_pred HHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH----HHHHhcCCCCC---cCccccccc---------
Q 045345 189 QLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK----QLESLAGKHEW---FDEHLLMTH--------- 252 (445)
Q Consensus 189 ~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~----~l~~l~~~~~~---~~~~vl~t~--------- 252 (445)
.+...+... ....+...+. ++.+|+|||++... ..+.+...... .+..+++++
T Consensus 79 ~~~~~~~~~----------~~~~~~~~~~-~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 79 AMVEHLKKG----------TINEFRNMYK-SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHT----------CHHHHHHHHH-TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHcC----------cHHHHHHHhc-CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHH
Confidence 232222210 1112222232 46799999986432 11111100000 011122221
Q ss_pred ---------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 253 ---------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 253 ---------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
....++++++ +.++-.+++...+....... ..+....|++.+ |.+-.+
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l--~~~~l~~l~~~~-g~~r~l 204 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLEL--RKEVIDYLLENT-KNVREI 204 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHC-SSHHHH
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHhC-CCHHHH
Confidence 1124688999 99999999988764322211 135567788888 777644
No 45
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.32 E-value=2.4e-05 Score=73.25 Aligned_cols=165 Identities=16% Similarity=0.185 Sum_probs=91.9
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
...+++|.+..++.|.+.+.. +-...+.+.|+|++|+|||+||++++......| +.+.
T Consensus 13 ~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~---i~v~-------- 81 (301)
T 3cf0_A 13 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANF---ISIK-------- 81 (301)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEE---EEEC--------
T ss_pred CHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCE---EEEE--------
Confidence 346799999998888876642 112345788999999999999999998764332 1121
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-------------------H-HHHhcCC
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-------------------Q-LESLAGK 240 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------------~-l~~l~~~ 240 (445)
.. .+.....+.. . ......+.......+.+|+||+++... + +..+-+.
T Consensus 82 --~~----~l~~~~~g~~---~---~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~ 149 (301)
T 3cf0_A 82 --GP----ELLTMWFGES---E---ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 149 (301)
T ss_dssp --HH----HHHHHHHTTC---T---THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSS
T ss_pred --hH----HHHhhhcCch---H---HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcc
Confidence 11 1222222211 1 112223333344678999999997532 1 1112111
Q ss_pred CCCc--------------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCChHH
Q 045345 241 HEWF--------------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLPLA 303 (445)
Q Consensus 241 ~~~~--------------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlPLa 303 (445)
.... +..++...+....+.++..+.++-.+++......... .... ...++..+.|.|-+
T Consensus 150 ~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~ 223 (301)
T 3cf0_A 150 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA 223 (301)
T ss_dssp CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence 1100 1112222244567889999999988888776632221 1112 23455566676643
No 46
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.29 E-value=2.4e-05 Score=74.63 Aligned_cols=170 Identities=12% Similarity=0.132 Sum_probs=91.5
Q ss_pred ccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHH
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQL 190 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~i 190 (445)
....++|.+..++.|...+..+ ..+.+.++|++|+||||+|+.++..+... +...+.-.+ .+...+...+.. .
T Consensus 23 ~~~~~~g~~~~~~~L~~~i~~g--~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~---~~~~~~~~~ir~-~ 96 (340)
T 1sxj_C 23 TLDEVYGQNEVITTVRKFVDEG--KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGIDVVRN-Q 96 (340)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT--CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHHHHHT-H
T ss_pred cHHHhcCcHHHHHHHHHHHhcC--CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc---CcccccHHHHHH-H
Confidence 3456889999999998888754 23338899999999999999999875322 211111110 111112221111 1
Q ss_pred HHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH--HHHHHh---cCCCCCcCcccccccC----------CC
Q 045345 191 LSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL--KQLESL---AGKHEWFDEHLLMTHG----------VD 255 (445)
Q Consensus 191 l~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~~~~vl~t~~----------~~ 255 (445)
+..+..... .+.+.+-++|+|+++.. ...+.+ +........-++.+.. ..
T Consensus 97 i~~~~~~~~---------------~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~ 161 (340)
T 1sxj_C 97 IKDFASTRQ---------------IFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQC 161 (340)
T ss_dssp HHHHHHBCC---------------SSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTS
T ss_pred HHHHHhhcc---------------cCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhc
Confidence 111110000 01134678999998642 222222 2111110111111111 12
Q ss_pred ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHH
Q 045345 256 EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLAL 304 (445)
Q Consensus 256 ~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal 304 (445)
..+.+.+++.++..+.+...+-...... ..+....+++.++|.+--+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~i--~~~~~~~i~~~s~G~~r~~ 208 (340)
T 1sxj_C 162 TRFRFQPLPQEAIERRIANVLVHEKLKL--SPNAEKALIELSNGDMRRV 208 (340)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCB--CHHHHHHHHHHHTTCHHHH
T ss_pred eeEeccCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 3688999999999888876652222111 1345778999999998754
No 47
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.28 E-value=8.1e-06 Score=78.43 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=94.7
Q ss_pred cccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
....+++|.+..++.|...+.. .....+-|.|+|++|+|||+||+++++.....|- .+. ....
T Consensus 48 ~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~---~v~-~~~l--- 120 (355)
T 2qp9_X 48 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFF---SVS-SSDL--- 120 (355)
T ss_dssp CCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEE---EEE-HHHH---
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE---Eee-HHHH---
Confidence 3456799999999999876621 1112345789999999999999999997644321 111 1111
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhHHH-HHHHHccCcEEEEEcCCCCHH-------------HHHHhc----CCCC
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGLKM-IGSRLRYRKVLLIVDAAFDLK-------------QLESLA----GKHE 242 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~-l~~~l~~~~~LlVlDdv~~~~-------------~l~~l~----~~~~ 242 (445)
..... ......... +......++.+|+||+++... ....++ +...
T Consensus 121 ----------~~~~~-------g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~ 183 (355)
T 2qp9_X 121 ----------VSKWM-------GESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN 183 (355)
T ss_dssp ----------HSCC----------CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-
T ss_pred ----------hhhhc-------chHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccc
Confidence 10000 011111222 222234578999999997431 112221 1000
Q ss_pred -CcCccccccc------------CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCC-ChHHHHHHH
Q 045345 243 -WFDEHLLMTH------------GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGG-LPLALKVLG 308 (445)
Q Consensus 243 -~~~~~vl~t~------------~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~G-lPLal~~~~ 308 (445)
..+..++.++ +....+.++..+.++-.+++..++........ ......|++.+.| .+-.|..+.
T Consensus 184 ~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~--~~~l~~la~~t~G~sg~dl~~l~ 261 (355)
T 2qp9_X 184 DSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLT--KEDYRTLGAMTEGYSGSDIAVVV 261 (355)
T ss_dssp --CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCC--HHHHHHHHHHTTTCCHHHHHHHH
T ss_pred cCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHcCCCCHHHHHHHH
Confidence 0011122111 34466789999999999999877633221111 2345678888887 454555554
No 48
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.22 E-value=1.2e-05 Score=76.07 Aligned_cols=51 Identities=18% Similarity=0.092 Sum_probs=41.9
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....+++|.+..++.+..++..+. ...++.+.|++|+|||++|+++++.+.
T Consensus 23 ~~~~~ivg~~~~~~~l~~~l~~~~-~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 23 STIDECILPAFDKETFKSITSKGK-IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CSTTTSCCCHHHHHHHHHHHHTTC-CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCHHHHhCcHHHHHHHHHHHHcCC-CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 345779999999999999988532 235788899999999999999998763
No 49
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.20 E-value=1.7e-05 Score=76.38 Aligned_cols=162 Identities=15% Similarity=0.118 Sum_probs=91.7
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhcc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEK 180 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~ 180 (445)
.-.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-. +. .......
T Consensus 146 ~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~---v~-~s~l~sk 221 (405)
T 4b4t_J 146 TYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR---VS-GAELVQK 221 (405)
T ss_dssp CGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE---EE-GGGGSCS
T ss_pred CHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE---EE-hHHhhcc
Confidence 346788999999988775531 22234568899999999999999999987655421 11 1111100
Q ss_pred CCHHHHHHHHHHHHhCCCCCCCcChhhhH-HHHHHHHccCcEEEEEcCCCCHH----------------HHHHhc----C
Q 045345 181 GGLICLQKQLLSELLKLPDTSTWNVYDGL-KMIGSRLRYRKVLLIVDAAFDLK----------------QLESLA----G 239 (445)
Q Consensus 181 ~~~~~l~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~l~~l~----~ 239 (445)
........+ ..+...-...|++|+||+++... .+..++ +
T Consensus 222 --------------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg 281 (405)
T 4b4t_J 222 --------------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDG 281 (405)
T ss_dssp --------------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHT
T ss_pred --------------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhc
Confidence 001111111 12222234678999999987320 122221 1
Q ss_pred CCCC--------------cCcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCCh
Q 045345 240 KHEW--------------FDEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 240 ~~~~--------------~~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 301 (445)
.... +|..++...+.+..+.++..+.++-.++|..+.-+-.. ...+ ...|++.+.|.-
T Consensus 282 ~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~S 354 (405)
T 4b4t_J 282 FETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCS 354 (405)
T ss_dssp TTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCC
T ss_pred cCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCC
Confidence 1110 02333333356678999999999999999877633221 1112 355777777654
No 50
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.20 E-value=2.2e-06 Score=80.69 Aligned_cols=47 Identities=23% Similarity=0.281 Sum_probs=36.2
Q ss_pred cccccchhHHHHHhhhcc-------------CCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 115 DLVGMDSCWNTLRFLMDK-------------EPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~-------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++|.+..++.|..++.. .......+.|+|++|+|||+||+.+++.+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 588998888888765531 02234568899999999999999998865
No 51
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.18 E-value=1.1e-05 Score=80.38 Aligned_cols=48 Identities=15% Similarity=0.190 Sum_probs=40.0
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+.+|||+.+++.+...+.... ..-+.|+|++|+|||+||+.++..+.
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~~--~~~~LL~G~pG~GKT~la~~la~~l~ 226 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQII 226 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCccCcHHHHHHHHHHHhccC--CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3569999999999999987532 33567999999999999999998863
No 52
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.11 E-value=4.6e-05 Score=69.50 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=37.9
Q ss_pred cccccccccchhHHHHHhhhcc--C--------CCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK--E--------PYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....+++|.+..++++..++.. . ....+-+.|+|++|+||||||+.+++...
T Consensus 9 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 9 TTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3456799999888877665431 0 01133588999999999999999998764
No 53
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.10 E-value=2e-05 Score=76.99 Aligned_cols=55 Identities=25% Similarity=0.252 Sum_probs=41.7
Q ss_pred cccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
....++.|.+...++|.+.+.. +-...+-|.++|+||+|||.||++++......|
T Consensus 178 ~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f 243 (434)
T 4b4t_M 178 ETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATF 243 (434)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred CChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCE
Confidence 3457789999999988765321 222356788999999999999999999765543
No 54
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.09 E-value=3.2e-05 Score=75.67 Aligned_cols=53 Identities=25% Similarity=0.302 Sum_probs=40.7
Q ss_pred cccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
-.++.|.+..+++|.+.+.. +-...+=|.++|++|+|||.||+++++.....|
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~ 243 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANF 243 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEE
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 46788999998888775531 222356788999999999999999999875543
No 55
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.08 E-value=3.2e-05 Score=75.55 Aligned_cols=160 Identities=15% Similarity=0.124 Sum_probs=90.0
Q ss_pred ccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCC
Q 045345 114 KDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGG 182 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~ 182 (445)
.++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|-. +. ...+...
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~---vs-~s~L~sk-- 282 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIR---VI-GSELVQK-- 282 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE---EE-GGGGCCC--
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE---EE-hHHhhcc--
Confidence 5688999999888775421 22335678899999999999999999987654421 11 1111000
Q ss_pred HHHHHHHHHHHHhCCCCCCCcChhhhH-HHHHHHHccCcEEEEEcCCCCHH----------------H----HHHhcCCC
Q 045345 183 LICLQKQLLSELLKLPDTSTWNVYDGL-KMIGSRLRYRKVLLIVDAAFDLK----------------Q----LESLAGKH 241 (445)
Q Consensus 183 ~~~l~~~il~~l~~~~~~~~~~~~~~~-~~l~~~l~~~~~LlVlDdv~~~~----------------~----l~~l~~~~ 241 (445)
........+ ..+...-...+++|+||+++... . +..+-+..
T Consensus 283 ------------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~ 344 (467)
T 4b4t_H 283 ------------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD 344 (467)
T ss_dssp ------------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC
T ss_pred ------------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC
Confidence 001111111 22223334678999999986320 1 11111111
Q ss_pred CC--------------cCcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHhCCCh
Q 045345 242 EW--------------FDEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQ-PWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 242 ~~--------------~~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~-~~~~~~~~~~~i~~~~~GlP 301 (445)
.. ++..++...|.+..+.++..+.++-.++|..+.-+-.. ...+ ...|++.+.|.-
T Consensus 345 ~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS 415 (467)
T 4b4t_H 345 PRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST 415 (467)
T ss_dssp CTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred CCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence 10 02222222345677899999999999999877633221 1112 345677777753
No 56
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.02 E-value=8.4e-05 Score=70.67 Aligned_cols=170 Identities=16% Similarity=0.089 Sum_probs=87.1
Q ss_pred chhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHH-----
Q 045345 120 DSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSEL----- 194 (445)
Q Consensus 120 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l----- 194 (445)
+...+.+...+..+. -...+.++|++|+|||++|+.+++.+....... ... .+.......+....
T Consensus 8 ~~~~~~l~~~i~~~~-~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~-~~~--------c~~c~~c~~~~~~~~~d~~ 77 (334)
T 1a5t_A 8 RPDFEKLVASYQAGR-GHHALLIQALPGMGDDALIYALSRYLLCQQPQG-HKS--------CGHCRGCQLMQAGTHPDYY 77 (334)
T ss_dssp HHHHHHHHHHHHTTC-CCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBT-TBC--------CSCSHHHHHHHHTCCTTEE
T ss_pred HHHHHHHHHHHHcCC-cceeEEEECCCCchHHHHHHHHHHHHhCCCCCC-CCC--------CCCCHHHHHHhcCCCCCEE
Confidence 344566666665332 245788999999999999999998753322100 000 00000000010000
Q ss_pred -hCCCC-CCCcChhhhHHHHHHHH-----ccCcEEEEEcCCCCH--HHHHHh---cCCCCCc---------Cccccccc-
Q 045345 195 -LKLPD-TSTWNVYDGLKMIGSRL-----RYRKVLLIVDAAFDL--KQLESL---AGKHEWF---------DEHLLMTH- 252 (445)
Q Consensus 195 -~~~~~-~~~~~~~~~~~~l~~~l-----~~~~~LlVlDdv~~~--~~l~~l---~~~~~~~---------~~~vl~t~- 252 (445)
..... ......+. +..+.+.+ .+++-++|+|+++.. +..+.+ +...... ...++.|.
T Consensus 78 ~~~~~~~~~~~~i~~-ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~ 156 (334)
T 1a5t_A 78 TLAPEKGKNTLGVDA-VREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLR 156 (334)
T ss_dssp EECCCTTCSSBCHHH-HHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHH
T ss_pred EEeccccCCCCCHHH-HHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHh
Confidence 00000 01111222 12222222 246789999999843 222222 3222211 11122111
Q ss_pred CCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 253 GVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 253 ~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
.....+++++++.++..+.+.... .. + .+.+..+++.++|.|..+..+
T Consensus 157 SRc~~~~~~~~~~~~~~~~L~~~~---~~-~---~~~~~~l~~~s~G~~r~a~~~ 204 (334)
T 1a5t_A 157 SRCRLHYLAPPPEQYAVTWLSREV---TM-S---QDALLAALRLSAGSPGAALAL 204 (334)
T ss_dssp TTSEEEECCCCCHHHHHHHHHHHC---CC-C---HHHHHHHHHHTTTCHHHHHHT
T ss_pred hcceeeeCCCCCHHHHHHHHHHhc---CC-C---HHHHHHHHHHcCCCHHHHHHH
Confidence 123568999999999999998765 11 1 244677999999999766443
No 57
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.02 E-value=5.2e-06 Score=76.38 Aligned_cols=52 Identities=25% Similarity=0.259 Sum_probs=38.8
Q ss_pred ccccccccchhHHHHHhhhcc----------CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
....++|.+..++.+.+.+.. +....+-+.|+|++|+|||+||+++++....
T Consensus 9 ~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~ 70 (268)
T 2r62_A 9 RFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHV 70 (268)
T ss_dssp CSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred CHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 446799999998888776541 1111234779999999999999999987643
No 58
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.02 E-value=2.8e-05 Score=83.46 Aligned_cols=47 Identities=15% Similarity=0.198 Sum_probs=39.6
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|||+.+++.+...|.... .+.+.|+|++|+|||+||+.+++.+
T Consensus 169 ld~viGr~~~i~~l~~~l~~~~--~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRRT--KNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCSS--CCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CcccCCcHHHHHHHHHHHhcCC--CCceEEEcCCCCCHHHHHHHHHHHH
Confidence 3568999999999999887532 3456799999999999999999875
No 59
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.01 E-value=3.1e-05 Score=75.57 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=41.0
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
...++.|.+...++|.+.+.. +-...+-|.++|++|+|||.||+++++.....|
T Consensus 170 ~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~ 234 (428)
T 4b4t_K 170 TYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAF 234 (428)
T ss_dssp CGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEE
T ss_pred CHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 346789999998888775531 222355688999999999999999999875544
No 60
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.98 E-value=2.2e-05 Score=73.55 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=37.8
Q ss_pred ccccccchhHHHHHhhhcc------------CCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK------------EPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+...+.. .......+.|+|++|+|||+||+.+++.+.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999888876653 011234677999999999999999998764
No 61
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.97 E-value=6.8e-05 Score=72.57 Aligned_cols=55 Identities=25% Similarity=0.346 Sum_probs=41.5
Q ss_pred cccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
....++.|.+...++|.+.+.. +-.-.+=|.++|++|+|||.||++++......|
T Consensus 179 v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~f 244 (437)
T 4b4t_I 179 ESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATF 244 (437)
T ss_dssp CCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEE
T ss_pred CcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCE
Confidence 3446788999998888775431 112346788999999999999999999876554
No 62
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.96 E-value=5.8e-05 Score=75.40 Aligned_cols=50 Identities=24% Similarity=0.268 Sum_probs=39.8
Q ss_pred ccccccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.+..+++|.+++... ....+-|.|+|++|+|||+||+++++....
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~ 264 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC
Confidence 56899999999998877531 223456889999999999999999987643
No 63
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.95 E-value=3.1e-05 Score=67.80 Aligned_cols=61 Identities=16% Similarity=0.115 Sum_probs=39.9
Q ss_pred ccccccccch----hHHHHHhhhccCCCC--eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 112 IFKDLVGMDS----CWNTLRFLMDKEPYG--VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 112 ~~~~~vGr~~----~l~~l~~~L~~~~~~--~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...+|++.+. .++.+.+++...... .+.+.|+|++|+|||+||+++++........++++.
T Consensus 23 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 23 SLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 3456776553 344455555433221 267889999999999999999988655444455554
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.92 E-value=7.1e-05 Score=79.42 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=39.6
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++||+.+++.+.+.|... ...-+.|+|++|+|||+||+.++..+
T Consensus 185 ~d~~iGr~~~i~~l~~~l~~~--~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 185 IDPLIGREKELERAIQVLCRR--RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCCCCSCHHHHHHHHHHHTSS--SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCccCCHHHHHHHHHHHhcc--CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 356899999999999988754 23456799999999999999999875
No 65
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.89 E-value=3.9e-05 Score=65.86 Aligned_cols=49 Identities=20% Similarity=0.232 Sum_probs=33.1
Q ss_pred ccccc----cchhHHHHHhhhccC-CCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVG----MDSCWNTLRFLMDKE-PYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vG----r~~~l~~l~~~L~~~-~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
++|++ ....++.+..++..- ......++|+|++|+||||||+.++..+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 10 DTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp SSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45654 334444555544431 12346889999999999999999998764
No 66
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.86 E-value=8.6e-05 Score=78.74 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=39.7
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|||+.+++.+...|.... ..-+.|+|++|+|||++|+.+++.+
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~~--~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRRT--KNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCSS--SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCccCchHHHHHHHHHHhCCC--CCCeEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999987532 3346799999999999999999875
No 67
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.84 E-value=0.00016 Score=71.77 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=88.7
Q ss_pred ccccccccchhHHHHHhhhcc--C--------CCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK--E--------PYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKG 181 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~--~--------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~ 181 (445)
...+++|.+..++++.+.... . ..-.+-|.|+|++|+|||+||++++......|- .+. ........
T Consensus 14 ~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~---~is-~~~~~~~~ 89 (476)
T 2ce7_A 14 TFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFF---HIS-GSDFVELF 89 (476)
T ss_dssp CGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEE---EEE-GGGTTTCC
T ss_pred CHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCee---eCC-HHHHHHHH
Confidence 456799999988877765432 1 011234789999999999999999987643331 111 11111100
Q ss_pred CHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCH----------------HHHHHhcCC-----
Q 045345 182 GLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDL----------------KQLESLAGK----- 240 (445)
Q Consensus 182 ~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~----------------~~l~~l~~~----- 240 (445)
...........+.....+.+.+|+||+++.. ..+..++..
T Consensus 90 -------------------~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~ 150 (476)
T 2ce7_A 90 -------------------VGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD 150 (476)
T ss_dssp -------------------TTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC
T ss_pred -------------------hcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC
Confidence 0000111222344444567899999998542 112222210
Q ss_pred --CCCc-----------CcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHhCCCh
Q 045345 241 --HEWF-----------DEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYSGGLP 301 (445)
Q Consensus 241 --~~~~-----------~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~~GlP 301 (445)
.... +..++...+.+..+.++..+.++-.+++..++.......+. ....+++.+.|+.
T Consensus 151 ~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~~v---~l~~la~~t~G~s 221 (476)
T 2ce7_A 151 SKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAEDV---NLEIIAKRTPGFV 221 (476)
T ss_dssp GGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCTTC---CHHHHHHTCTTCC
T ss_pred CCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcchh---hHHHHHHhcCCCc
Confidence 0000 12222222445578899999888888887666332211110 0344777788877
No 68
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.77 E-value=0.00033 Score=63.66 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=36.3
Q ss_pred cccccccccchhHHHHHhhhcc--C-------C-CCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK--E-------P-YGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....+++|.+....++..+... . + .-.+-+.|+|++|+||||||+.++....
T Consensus 13 ~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 13 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456789988777766554321 0 0 0012288999999999999999998764
No 69
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=0.00019 Score=67.08 Aligned_cols=134 Identities=16% Similarity=0.072 Sum_probs=76.2
Q ss_pred ccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc---cCccccceeeehhhhhhc-cCCHHHHHHHHHHH
Q 045345 118 GMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS---SHEFEASSFLANVREISE-KGGLICLQKQLLSE 193 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~---~~~f~~~~~~~~~~~~~~-~~~~~~l~~~il~~ 193 (445)
|-+..++.|...+..+. .+...++|++|+|||++|..+++.. ...++....+. .+. ..++..+ +++...
T Consensus 1 g~~~~~~~L~~~i~~~~--~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~i-r~li~~ 73 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE--GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDDI-RTIKDF 73 (305)
T ss_dssp ---CHHHHHHHHHHTCS--SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHHH-HHHHHH
T ss_pred ChHHHHHHHHHHHHCCC--CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHHH-HHHHHH
Confidence 44566778888877543 6788999999999999999998742 11223333332 111 1222222 122222
Q ss_pred HhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCC--HHHHHHhc---CCC-CC--c------CcccccccCCCceEE
Q 045345 194 LLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFD--LKQLESLA---GKH-EW--F------DEHLLMTHGVDEVHK 259 (445)
Q Consensus 194 l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~--~~~l~~l~---~~~-~~--~------~~~vl~t~~~~~~~~ 259 (445)
....+ ..+++-++|+|+++. ....+.++ ..+ .. + ...++.|.... .++
T Consensus 74 ~~~~p-----------------~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~ 135 (305)
T 2gno_A 74 LNYSP-----------------ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFR 135 (305)
T ss_dssp HTSCC-----------------SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEE
T ss_pred Hhhcc-----------------ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEe
Confidence 21110 023567899999974 23333332 222 11 1 22444444444 899
Q ss_pred cCCCCHHHHHHHHHHhh
Q 045345 260 LKVLHDDEALQLFCKQA 276 (445)
Q Consensus 260 l~~L~~~ea~~Lf~~~a 276 (445)
+.+++.++..+.+....
T Consensus 136 f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 136 VVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EECCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHh
Confidence 99999999999998776
No 70
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.75 E-value=0.00016 Score=76.02 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=91.9
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhh-hc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREI-SE 179 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~-~~ 179 (445)
...++.|.+..+++|.+.+.. +-...+-|.++|++|+|||+||+++++....+| +.+. ..+. +.
T Consensus 202 ~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~---~~v~-~~~l~sk 277 (806)
T 3cf2_A 202 GYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF---FLIN-GPEIMSK 277 (806)
T ss_dssp CGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEE---EEEE-HHHHHSS
T ss_pred ChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeE---EEEE-hHHhhcc
Confidence 346788999999888776431 112256788999999999999999998765443 2222 1111 11
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHccCcEEEEEcCCCCHH-------------HHHHhcCC----CC
Q 045345 180 KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLRYRKVLLIVDAAFDLK-------------QLESLAGK----HE 242 (445)
Q Consensus 180 ~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~LlVlDdv~~~~-------------~l~~l~~~----~~ 242 (445)
.. ..........+.......+.+|+||+++... .+..++.. ..
T Consensus 278 ~~--------------------gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 278 LA--------------------GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp CT--------------------THHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred cc--------------------hHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 00 0111112222333445688999999986421 11222110 00
Q ss_pred C--------------cCcccccccCCCceEEcCCCCHHHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHhCCChH
Q 045345 243 W--------------FDEHLLMTHGVDEVHKLKVLHDDEALQLFCKQAFKTN-QPWKEYEQLSKYVVKYSGGLPL 302 (445)
Q Consensus 243 ~--------------~~~~vl~t~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~-~~~~~~~~~~~~i~~~~~GlPL 302 (445)
. ++..+....+.+..++++..+.++-.++|..+..+.. ....+ ...|++.+.|.--
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsg 408 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD----LEQVANETHGHVG 408 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCH
Confidence 0 0222222224556789999999999999987763321 11112 4457777777643
No 71
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.66 E-value=0.00098 Score=61.39 Aligned_cols=54 Identities=26% Similarity=0.334 Sum_probs=38.1
Q ss_pred CccccccccccchhHHHHHhhhcc--C-------C-CCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 109 KSEIFKDLVGMDSCWNTLRFLMDK--E-------P-YGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 109 ~~~~~~~~vGr~~~l~~l~~~L~~--~-------~-~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+....++++|.+....++..+... . + .-.+-+.|+|++|+||||||+.++....
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcC
Confidence 344567899999887777654431 0 0 0012288999999999999999998764
No 72
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.63 E-value=2.7e-05 Score=64.44 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=35.8
Q ss_pred cccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 115 DLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+++|++..++.+.+.+..-.....-|.|+|++|+|||++|+.+++..
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999988775422222356799999999999999998864
No 73
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.57 E-value=0.00014 Score=68.09 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=38.3
Q ss_pred ccccccchhHHHHHhhhccC------CC-CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 114 KDLVGMDSCWNTLRFLMDKE------PY-GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.+..++.+...+... .. ....+.|+|++|+|||++|+.++.....
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred hhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 35789999988887776531 11 1357899999999999999999987643
No 74
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.56 E-value=9e-05 Score=73.64 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=39.2
Q ss_pred ccccccccchhHHHHHhhhc---cCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 112 IFKDLVGMDSCWNTLRFLMD---KEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~---~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
....++|.+..++.+..++. .+....+-+.++|++|+|||+||+++++.+..
T Consensus 35 ~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~ 89 (456)
T 2c9o_A 35 AASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS 89 (456)
T ss_dssp EETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT
T ss_pred chhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC
Confidence 35789999998877655443 22222356889999999999999999998753
No 75
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.52 E-value=0.00027 Score=62.45 Aligned_cols=33 Identities=21% Similarity=0.078 Sum_probs=25.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++|.|++|+||||||..++. ..-..++|+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~ 52 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVD 52 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEE
Confidence 45899999999999999999987 1223455554
No 76
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.49 E-value=0.0022 Score=58.91 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=32.5
Q ss_pred cccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 113 FKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
-.++.|.+...++|...+.. +-.-.+-++|+|++|+||||||+.++.....
T Consensus 9 ~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 9 WADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp ---CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC
Confidence 34567777777766553210 0001122899999999999999999987543
No 77
>2js7_A Myeloid differentiation primary response protein MYD88; MYD88_human, TIR domain, TOLL like receptor adaptor domain, innate immune signaling; NMR {Homo sapiens} PDB: 2z5v_A
Probab=97.49 E-value=1.1e-05 Score=67.84 Aligned_cols=35 Identities=20% Similarity=0.255 Sum_probs=29.3
Q ss_pred CCCCChhhHHHHHHHHhch-hcCCCccEEEeeeccCCC
Q 045345 1 NYAYSTWCLDELVEIVELK-STNGHQQLIFPIFYDVEP 37 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~-~~~~~~~~v~Pvfy~v~p 37 (445)
||++|.||+.|+..+++|. +.++ ..||||||+.-+
T Consensus 82 ~y~~S~wc~~El~~a~~~~~~~~~--~~vIpV~~~~~~ 117 (160)
T 2js7_A 82 DYLQSKECDFQTKFALSLSPGAHQ--KRLIPIKYKAMK 117 (160)
T ss_dssp HHHHSHHHHHHHHHHHHHCTTHHH--HTEEEEESSCCC
T ss_pred chhcCHHHHHHHHHHHHHHHccCC--CEEEEEEEcccc
Confidence 5899999999999999976 4445 789999998643
No 78
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.45 E-value=0.00042 Score=69.15 Aligned_cols=52 Identities=29% Similarity=0.408 Sum_probs=37.6
Q ss_pred cccccccccchhHHHHHhhhcc--CC--------CCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDK--EP--------YGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~--~~--------~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
....+++|.+..+.++.++... .. .-.+-+.|+|++|+|||+||++++....
T Consensus 28 ~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 28 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999887777665431 10 0122388999999999999999998764
No 79
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.42 E-value=0.00023 Score=66.34 Aligned_cols=72 Identities=15% Similarity=0.171 Sum_probs=45.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
.+++.|+|++|+|||+||.+++.. .-..+.|+..- ..+. +. ....+.+.....+.+.+
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~~--~eE~-------------v~----~~~~~le~~l~~i~~~l 180 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEA---LGGKDKYATVR--FGEP-------------LS----GYNTDFNVFVDDIARAM 180 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEEE--BSCS-------------ST----TCBCCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEec--chhh-------------hh----hhhcCHHHHHHHHHHHH
Confidence 357789999999999999999876 22234565520 0111 00 00134455555566666
Q ss_pred ccCcEEEEEcCCCCH
Q 045345 217 RYRKVLLIVDAAFDL 231 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~ 231 (445)
...+ +||+|++...
T Consensus 181 ~~~~-LLVIDsI~aL 194 (331)
T 2vhj_A 181 LQHR-VIVIDSLKNV 194 (331)
T ss_dssp HHCS-EEEEECCTTT
T ss_pred hhCC-EEEEeccccc
Confidence 6666 9999998653
No 80
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.41 E-value=0.00013 Score=67.87 Aligned_cols=27 Identities=26% Similarity=0.380 Sum_probs=23.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+.+.|+|++|+|||+||+++++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~ 62 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGI 62 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 467889999999999999999998743
No 81
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.39 E-value=0.00018 Score=59.63 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...++|+|++|+|||||++.++.....
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458899999999999999999987643
No 82
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.38 E-value=0.00023 Score=66.58 Aligned_cols=48 Identities=21% Similarity=0.207 Sum_probs=37.4
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..++|++..+..+.+.+..-......|.|+|++|+|||++|+.+++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhC
Confidence 358999999999988776422223456799999999999999998854
No 83
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.34 E-value=0.0012 Score=70.05 Aligned_cols=53 Identities=23% Similarity=0.224 Sum_probs=41.2
Q ss_pred ccccccccchhHHHHHhhhcc-----------CCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDK-----------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~-----------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+++|.+..++.|.+++.. .-.....|.|+|++|+||||||+.++..+...
T Consensus 202 ~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~ 265 (806)
T 1ypw_A 202 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF 265 (806)
T ss_dssp CGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE
T ss_pred CHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc
Confidence 446799999999998877642 11234578999999999999999999876543
No 84
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.29 E-value=4.2e-05 Score=63.09 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=34.4
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
-.++|++..++.+.+.+..-.....-|.|+|++|+|||++|+.+++...
T Consensus 4 ~~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 4 FDKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp ----CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cCceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC
Confidence 3589999999988887654111223477999999999999999987543
No 85
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.28 E-value=0.00035 Score=65.47 Aligned_cols=61 Identities=16% Similarity=0.195 Sum_probs=38.4
Q ss_pred ccccccccc----hhHHHHHhhhccCCC-CeEEEEEEccCCCchhHHHHHHHhhcc-Cccccceeee
Q 045345 112 IFKDLVGMD----SCWNTLRFLMDKEPY-GVRMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLA 172 (445)
Q Consensus 112 ~~~~~vGr~----~~l~~l~~~L~~~~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 172 (445)
...+|++.+ ..++.+.+++..... ....+.|+|++|+|||+||.++++... .....+.++.
T Consensus 122 tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 122 HLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 345676543 234444555553222 246788999999999999999998765 4333344444
No 86
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.26 E-value=0.00037 Score=66.34 Aligned_cols=99 Identities=17% Similarity=0.098 Sum_probs=56.5
Q ss_pred HHHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC---
Q 045345 124 NTLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD--- 199 (445)
Q Consensus 124 ~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~--- 199 (445)
..|...|. .+-....++.|.|++|+||||||.+++......-..++|+. ........ .+..++....
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId----~E~s~~~~-----ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID----AEHALDPV-----YAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cccccchH-----HHHHcCCchhhhh
Confidence 34555555 32233579999999999999999999876543323456665 22212221 2333332111
Q ss_pred -CCCcChhhhHHHHHHHHc-cCcEEEEEcCCCCH
Q 045345 200 -TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAFDL 231 (445)
Q Consensus 200 -~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~~ 231 (445)
....+.++....+...++ .+.-++|+|.+...
T Consensus 118 i~~~~~~e~~l~~~~~l~~~~~~dlvVIDSi~~l 151 (356)
T 3hr8_A 118 ISQPDHGEQALEIVDELVRSGVVDLIVVDSVAAL 151 (356)
T ss_dssp EECCSSHHHHHHHHHHHHHTSCCSEEEEECTTTC
T ss_pred hhhccCHHHHHHHHHHHhhhcCCCeEEehHhhhh
Confidence 123345555555555544 45679999988543
No 87
>2j67_A TOLL like receptor 10; TIR, IL-1, TLR10, membrane, innate immunity, immune response, leucine-rich repeat, glycoprotein, transmembrane; 2.20A {Homo sapiens} PDB: 1fyv_A
Probab=97.15 E-value=3.3e-05 Score=66.07 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=24.5
Q ss_pred CCCCChhhHHHHHHHHhch-hcCCCccEEEeeeccC
Q 045345 1 NYAYSTWCLDELVEIVELK-STNGHQQLIFPIFYDV 35 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~~~-~~~~~~~~v~Pvfy~v 35 (445)
||++|.||+.||..++.+. ++++ ..||||||+-
T Consensus 101 ~yl~S~wc~~El~~a~~~~~~~~~--~~vIpV~~~~ 134 (178)
T 2j67_A 101 NFVQNEWCHYEFYFAHHNLFHENS--DHIILILLEP 134 (178)
T ss_dssp HHHHHTGGGTHHHHTTCC---------CEEEEESSC
T ss_pred cccccchHHHHHHHHHHHHHhcCC--CEEEEEEecC
Confidence 6899999999999999754 5556 7899999973
No 88
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.11 E-value=0.00088 Score=70.93 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=38.2
Q ss_pred cccccccchhHHHHHhhhccCC-------CCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEP-------YGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~-------~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++|.+..++.+...+.... .....+.++|++|+|||+||+++++..
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999988877665311 112368899999999999999999876
No 89
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.10 E-value=0.00034 Score=63.96 Aligned_cols=50 Identities=22% Similarity=0.155 Sum_probs=34.7
Q ss_pred cccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++|.+..+..+.+.+..-......|.|+|++|+|||+||+.+++...
T Consensus 5 f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 5 KDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp -----CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred cccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 35689999999888776653111234677999999999999999998653
No 90
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.08 E-value=0.002 Score=61.33 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=27.8
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|..+|..+-....++.|+|++|+||||||..++...
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455554333345799999999999999999998763
No 91
>1fyx_A TOLL-like receptor 2; beta-alpha-beta fold, signaling protein; 2.80A {Homo sapiens} SCOP: c.23.2.1 PDB: 1fyw_A 1o77_A
Probab=97.08 E-value=2e-05 Score=65.49 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=30.1
Q ss_pred CCCCChhhHHHHHHHHh-chhcCCCccEEEeeecc-CCCccc
Q 045345 1 NYAYSTWCLDELVEIVE-LKSTNGHQQLIFPIFYD-VEPTVV 40 (445)
Q Consensus 1 ~ya~s~wcl~el~~i~~-~~~~~~~~~~v~Pvfy~-v~ps~v 40 (445)
||++|.||+.||..++. |.+.++ ..||||||+ +++..+
T Consensus 71 ~y~~S~wc~~El~~a~~~~~~~~~--~~vIpv~~~~i~~~~~ 110 (149)
T 1fyx_A 71 NFVKSEWXKYELDFSHFRLFDENN--DAAILILLEPIEKKAI 110 (149)
T ss_dssp HHHHHHTHHHHSCCSCCTTCGGGT--TCCEEEESSCCCTTTS
T ss_pred chhccchHHHHHHHHHHHHHhcCC--CEEEEEEecCCChhhc
Confidence 58999999999999995 556666 789999995 555433
No 92
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.91 E-value=0.0013 Score=69.80 Aligned_cols=49 Identities=18% Similarity=0.159 Sum_probs=37.8
Q ss_pred ccccccchhHHHHHhhhccC-------CCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE-------PYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~-------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+...+... ......+.++|++|+|||+||+.+++...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhc
Confidence 46899999998887766421 11234788999999999999999998763
No 93
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.91 E-value=0.0018 Score=57.97 Aligned_cols=36 Identities=17% Similarity=0.080 Sum_probs=26.0
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|..+|..+-....+++|.|++|+|||||+..++..
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 344444322222459999999999999999999875
No 94
>1t3g_A X-linked interleukin-1 receptor accessory protein-like 1; TIR, IL-1RAPL, IL-1R, TLR, membrane protein; 2.30A {Homo sapiens}
Probab=96.91 E-value=0.00026 Score=59.30 Aligned_cols=36 Identities=19% Similarity=0.136 Sum_probs=30.3
Q ss_pred CCC-CChhhHHHHHHHHhch-hcCCCccEEEeeeccCCCc
Q 045345 1 NYA-YSTWCLDELVEIVELK-STNGHQQLIFPIFYDVEPT 38 (445)
Q Consensus 1 ~ya-~s~wcl~el~~i~~~~-~~~~~~~~v~Pvfy~v~ps 38 (445)
||+ +|.||+.|+..++.|. +.++ ..||||||.-.|.
T Consensus 78 ~y~~~S~wc~~El~~a~~~~~~~~~--~~vI~I~~~~~~~ 115 (159)
T 1t3g_A 78 NYVVRRGWSIFELETRLRNMLVTGE--IKVILIECSELRG 115 (159)
T ss_dssp HHHHTTTTHHHHHSHHHHHHHHTTS--SEEEEEECSCCCS
T ss_pred chhhcChHHHHHHHHHHHHHHhcCC--CEEEEEEeccccc
Confidence 585 9999999999999987 5556 7999999986654
No 95
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.87 E-value=0.012 Score=54.47 Aligned_cols=35 Identities=23% Similarity=0.194 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
..+++++|.+|+||||++..++..+...-..+.++
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999987654332233443
No 96
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.86 E-value=0.0028 Score=59.49 Aligned_cols=51 Identities=18% Similarity=0.079 Sum_probs=34.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSE 193 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~ 193 (445)
..++.|.|.+|+||||||..++.....+-..++|+. -..+...+...++..
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s------lE~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS------LEMGKKENIKRLIVT 118 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE------CCCCHHHHHHHHHHH
Confidence 458999999999999999999876433324455554 224555555555544
No 97
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=96.83 E-value=0.0021 Score=60.64 Aligned_cols=48 Identities=19% Similarity=0.091 Sum_probs=31.5
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc------cccceeee
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE------FEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~------f~~~~~~~ 172 (445)
.|..+|..+-....++.|+|++|+|||+||..++...... -..++|+.
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~ 148 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID 148 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 3444443222234589999999999999999998764322 23456665
No 98
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.80 E-value=0.0015 Score=60.66 Aligned_cols=83 Identities=13% Similarity=0.129 Sum_probs=47.4
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCcc--ccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC----CCCcChhhh-HHH
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEF--EASSFLANVREISEKGGLICLQKQLLSELLKLPD----TSTWNVYDG-LKM 211 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f--~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~----~~~~~~~~~-~~~ 211 (445)
++.|.|++|+||||||.+++......+ ..++|++ ........ .++.++...+ ....+.++. ...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId----~E~s~~~~-----ra~~lGvd~d~llv~~~~~~E~~~l~i 100 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD----SEFGITPA-----YLRSMGVDPERVIHTPVQSLEQLRIDM 100 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE----SSCCCCHH-----HHHHTTCCGGGEEEEECSBHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe----ccchhhHH-----HHHHhCCCHHHeEEEcCCCHHHHHHHH
Confidence 789999999999999999887654432 3456765 22222221 2344432111 112344444 333
Q ss_pred HHHH--H-ccCcEEEEEcCCCC
Q 045345 212 IGSR--L-RYRKVLLIVDAAFD 230 (445)
Q Consensus 212 l~~~--l-~~~~~LlVlDdv~~ 230 (445)
+... + .+++-+||+|-+..
T Consensus 101 ~~~l~~i~~~~~~lvVIDSI~a 122 (333)
T 3io5_A 101 VNQLDAIERGEKVVVFIDSLGN 122 (333)
T ss_dssp HHHHHTCCTTCCEEEEEECSTT
T ss_pred HHHHHHhhccCceEEEEecccc
Confidence 3222 2 35788999998754
No 99
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.79 E-value=0.001 Score=63.85 Aligned_cols=48 Identities=25% Similarity=0.260 Sum_probs=36.3
Q ss_pred cccccchhHHHHHhhhc-------------cCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 115 DLVGMDSCWNTLRFLMD-------------KEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 115 ~~vGr~~~l~~l~~~L~-------------~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++|.+..++.+...+. ........+.|+|++|+|||++|+.+++...
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 46888888888877662 1111235688999999999999999998764
No 100
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.76 E-value=0.00076 Score=57.41 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+|.|.|++|+||||+|+.+...+..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 47899999999999999999987643
No 101
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.73 E-value=0.0015 Score=62.24 Aligned_cols=97 Identities=16% Similarity=0.082 Sum_probs=52.6
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC----
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD---- 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---- 199 (445)
.|..+|. .+-....++.|+|++|+||||||..++......-..++|+. ........ ....++....
T Consensus 48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~----~E~~~~~~-----~a~~lG~~~~~l~i 118 (349)
T 2zr9_A 48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID----AEHALDPE-----YAKKLGVDTDSLLV 118 (349)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----CCCCcCHH-----HHHHcCCCHHHeEE
Confidence 4444554 22223468999999999999999999876543333456665 22212211 1222221100
Q ss_pred CCCcChhhhHHHHHHHHc-cCcEEEEEcCCCC
Q 045345 200 TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAFD 230 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~~ 230 (445)
....+.++....+....+ .++-+||+|.+..
T Consensus 119 ~~~~~~e~~l~~~~~l~~~~~~~lIVIDsl~~ 150 (349)
T 2zr9_A 119 SQPDTGEQALEIADMLVRSGALDIIVIDSVAA 150 (349)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECGGG
T ss_pred ecCCCHHHHHHHHHHHHhcCCCCEEEEcChHh
Confidence 112234444444444443 3567999998743
No 102
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.73 E-value=0.0084 Score=55.85 Aligned_cols=28 Identities=25% Similarity=0.278 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+++|+|++|+||||++..++..+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 3579999999999999999999887643
No 103
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.72 E-value=0.00076 Score=63.83 Aligned_cols=48 Identities=23% Similarity=0.207 Sum_probs=38.9
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
..++|++..++.+...+..+ .-+.|+|++|+|||+||+.+++.....|
T Consensus 27 ~~i~g~~~~~~~l~~~l~~~----~~vll~G~pGtGKT~la~~la~~~~~~~ 74 (331)
T 2r44_A 27 KVVVGQKYMINRLLIGICTG----GHILLEGVPGLAKTLSVNTLAKTMDLDF 74 (331)
T ss_dssp TTCCSCHHHHHHHHHHHHHT----CCEEEESCCCHHHHHHHHHHHHHTTCCE
T ss_pred cceeCcHHHHHHHHHHHHcC----CeEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45899999999888777643 3577999999999999999998765443
No 104
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.72 E-value=0.003 Score=60.42 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=52.7
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC----
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD---- 199 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---- 199 (445)
.|..+|. .+-....++.|.|.+|+||||||..++......-..++|+. ........ .+..++....
T Consensus 61 ~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~----~E~s~~~~-----~a~~~g~d~~~l~i 131 (366)
T 1xp8_A 61 SLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID----AEHALDPV-----YARALGVNTDELLV 131 (366)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE----SSCCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE----CCCChhHH-----HHHHcCCCHHHcee
Confidence 4444554 22223458899999999999999999876543333567776 22212211 1222221100
Q ss_pred CCCcChhhhHHHHHHHHc-cCcEEEEEcCCC
Q 045345 200 TSTWNVYDGLKMIGSRLR-YRKVLLIVDAAF 229 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 229 (445)
....+.++....+....+ ...-+||+|.+.
T Consensus 132 ~~~~~~e~~l~~l~~l~~~~~~~lVVIDsl~ 162 (366)
T 1xp8_A 132 SQPDNGEQALEIMELLVRSGAIDVVVVDSVA 162 (366)
T ss_dssp ECCSSHHHHHHHHHHHHTTTCCSEEEEECTT
T ss_pred ecCCcHHHHHHHHHHHHhcCCCCEEEEeChH
Confidence 112344555555555544 345689999874
No 105
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.70 E-value=0.022 Score=55.54 Aligned_cols=29 Identities=21% Similarity=0.257 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+|.++|.+|+||||++..++..+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 36899999999999999999988765443
No 106
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.67 E-value=0.0017 Score=61.96 Aligned_cols=48 Identities=25% Similarity=0.269 Sum_probs=32.6
Q ss_pred HHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 125 TLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 125 ~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.|..+|. .+-...+++.|.|.+|+||||||..++......-..++|++
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid 98 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 98 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4444454 22223468999999999999999999876543333566766
No 107
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.65 E-value=0.0017 Score=56.61 Aligned_cols=43 Identities=26% Similarity=0.250 Sum_probs=31.8
Q ss_pred cchhHHHHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 119 MDSCWNTLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 119 r~~~l~~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
|+..++.|.+.+.. ......+|+|.|++|+|||||++.+...+
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44556666665543 22345799999999999999999998754
No 108
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.63 E-value=0.0068 Score=61.38 Aligned_cols=52 Identities=17% Similarity=0.325 Sum_probs=37.6
Q ss_pred ccccccchhHHHHHhhhcc----CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK----EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~----~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
.+.+|.+.....+...+.. .......+.|+|++|+||||||+.++......|
T Consensus 81 ~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 81 EEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred HHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 4578888877776543321 112356899999999999999999998775444
No 109
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.62 E-value=0.0012 Score=62.80 Aligned_cols=50 Identities=22% Similarity=0.222 Sum_probs=35.7
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.....++|.+...+.+...+.... ..-+.|+|++|+|||+||+.+++...
T Consensus 21 ~~f~~i~G~~~~~~~l~~~~~~~~--~~~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 21 FPFSAIVGQEDMKLALLLTAVDPG--IGGVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHCGG--GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred CCchhccChHHHHHHHHHHhhCCC--CceEEEECCCCccHHHHHHHHHHhCc
Confidence 345679999886666544333211 22388999999999999999998754
No 110
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.60 E-value=0.0018 Score=56.71 Aligned_cols=40 Identities=23% Similarity=0.303 Sum_probs=28.5
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+++|.+.+........+|+|.|++|.|||||++.+...+.
T Consensus 8 ~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 8 CQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3344444332223457999999999999999999987654
No 111
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.56 E-value=0.014 Score=53.94 Aligned_cols=30 Identities=20% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 134 PYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 134 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.....+|+|.|++|+||||||+.+...+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 345679999999999999999998876543
No 112
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.56 E-value=0.0013 Score=55.54 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||+|+.+...+.
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3789999999999999999988754
No 113
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.53 E-value=0.0061 Score=53.98 Aligned_cols=35 Identities=17% Similarity=0.259 Sum_probs=25.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|++|+|||||++.++......-..++|+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 58999999999999999999865432222344443
No 114
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.52 E-value=0.0043 Score=58.40 Aligned_cols=36 Identities=17% Similarity=0.122 Sum_probs=26.3
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|..+|..+-....++.|+|.+|+|||+||..++..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 344445322223469999999999999999998865
No 115
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.51 E-value=0.0045 Score=58.10 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=24.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+++|+|++|+||||++..++..+..
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999876654
No 116
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.48 E-value=0.039 Score=54.27 Aligned_cols=67 Identities=12% Similarity=0.036 Sum_probs=41.4
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHHHHHHhC
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQLLSELLK 196 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~ 196 (445)
+..|..++ .+-....++.|.|.+|+|||+||..++...... -..++|+. ...+...+...++....+
T Consensus 187 ~~~LD~~l-gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s------lE~~~~~l~~R~~~~~~~ 254 (444)
T 2q6t_A 187 FKELDQLI-GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS------LEMPAAQLTLRMMCSEAR 254 (444)
T ss_dssp CHHHHHHH-CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE------SSSCHHHHHHHHHHHHTT
T ss_pred CHhhhhhc-CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE------CCCCHHHHHHHHHHHHcC
Confidence 33444444 222234589999999999999999998775422 22455544 234555666666655443
No 117
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.45 E-value=0.012 Score=51.40 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|.|.|+||+||||.|+.++..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999998864
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.44 E-value=0.0016 Score=55.76 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.|.|+|++|+||||+|+.++..+
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999998865
No 119
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.42 E-value=0.0027 Score=67.45 Aligned_cols=53 Identities=21% Similarity=0.276 Sum_probs=40.0
Q ss_pred ccccccccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 112 IFKDLVGMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 112 ~~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+++|.+...+.|...+... -.....+.++|++|+|||+||+.++......
T Consensus 475 ~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~ 538 (806)
T 1ypw_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp SSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCC
T ss_pred cccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4466889999988888776421 1123568899999999999999999876443
No 120
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.40 E-value=0.0015 Score=56.19 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=23.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
|.|+|+|++|+|||||++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4678999999999999999987654444
No 121
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.39 E-value=0.013 Score=61.58 Aligned_cols=52 Identities=21% Similarity=0.286 Sum_probs=38.4
Q ss_pred cccccccchhHHHHHhhhccC-----------CCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKE-----------PYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~-----------~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
-.++.|.+...++|.+.+... ....+-|.++|++|.|||.||++++......
T Consensus 476 w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 356778888888887765421 1123457899999999999999999976544
No 122
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=96.39 E-value=0.0024 Score=63.76 Aligned_cols=45 Identities=18% Similarity=0.062 Sum_probs=37.3
Q ss_pred ccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+...+..+ .-|.|+|++|+|||+||+.++....
T Consensus 22 ~~ivGq~~~i~~l~~al~~~----~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSG----ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHT----CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred hhhHHHHHHHHHHHHHHhcC----CeeEeecCchHHHHHHHHHHHHHHh
Confidence 35899999998888777643 3678999999999999999998764
No 123
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.38 E-value=0.0018 Score=56.34 Aligned_cols=25 Identities=32% Similarity=0.311 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|++|+||||+|+.++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3589999999999999999999876
No 124
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.38 E-value=0.018 Score=50.68 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=23.9
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++|.|.|++|+||||.|+.+++.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998865
No 125
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.36 E-value=0.0019 Score=54.42 Aligned_cols=23 Identities=35% Similarity=0.593 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|++|+||||+|+.+ ...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 37899999999999999999 543
No 126
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.36 E-value=0.039 Score=53.92 Aligned_cols=29 Identities=21% Similarity=0.268 Sum_probs=24.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..++|.++|.+|+||||++..++..+...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~ 127 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREK 127 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 46799999999999999999998776543
No 127
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.35 E-value=0.0027 Score=61.15 Aligned_cols=26 Identities=27% Similarity=0.244 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+.|+|++|+|||+||+.+++.+..
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 46789999999999999999987643
No 128
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.32 E-value=0.0025 Score=54.49 Aligned_cols=26 Identities=12% Similarity=0.332 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++++|+|++|+|||||++.+.....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999987654
No 129
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.25 E-value=0.0024 Score=54.17 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+|.|.|++|+||||+|+.+..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 130
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.23 E-value=0.0022 Score=54.21 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|+|++|+|||||++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4789999999999999999988653
No 131
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.22 E-value=0.012 Score=54.54 Aligned_cols=26 Identities=31% Similarity=0.348 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|+|++|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46999999999999999999987654
No 132
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=96.18 E-value=0.0028 Score=54.51 Aligned_cols=24 Identities=29% Similarity=0.481 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+++|.|++|+|||||++.++..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 368999999999999999999875
No 133
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.17 E-value=0.0037 Score=53.74 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|++|+||||+|+.+...+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999998765
No 134
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.17 E-value=0.032 Score=54.79 Aligned_cols=49 Identities=14% Similarity=0.062 Sum_probs=31.6
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
+..|..++. +-....++.|.|.+|+||||||..++.....+-..++|+.
T Consensus 184 ~~~LD~~lg-Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS 232 (444)
T 3bgw_A 184 FTELDRMTY-GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 232 (444)
T ss_dssp CHHHHHHHS-SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred cHHHHhhcC-CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence 334444442 2223458999999999999999999887543322445543
No 135
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.16 E-value=0.0035 Score=56.46 Aligned_cols=41 Identities=17% Similarity=-0.031 Sum_probs=28.2
Q ss_pred hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 121 SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 121 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+.++..-+.........|+|.|++|+||||+|+.+.+.+
T Consensus 13 ~~~~~~~~~~~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 13 DLLNELKRRYACLSKPDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp HHHHHHHHHHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 33444443333222345689999999999999999998764
No 136
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.16 E-value=0.0029 Score=53.26 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|++|+||||+|+.++..+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999988653
No 137
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.16 E-value=0.0029 Score=54.34 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=22.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+|.|.|++|+||||+|+.+...+..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 27 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999987653
No 138
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.15 E-value=0.0023 Score=54.54 Aligned_cols=25 Identities=36% Similarity=0.468 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+.|.|.|++|+||||+|+.++..+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 3578899999999999999998765
No 139
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.15 E-value=0.0094 Score=56.70 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...++.|+|++|+|||||+..++...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45799999999999999999998765
No 140
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.13 E-value=0.0032 Score=55.21 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=23.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+++|.|++|+|||||++.+...+..
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 468999999999999999999886543
No 141
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=96.12 E-value=0.0043 Score=53.79 Aligned_cols=42 Identities=12% Similarity=0.216 Sum_probs=30.9
Q ss_pred hhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 121 SCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 121 ~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.-+..+..++..- +....+.|+|++|+|||++|.++++.+..
T Consensus 43 ~f~~~l~~~~~~i-Pkkn~ili~GPPGtGKTt~a~ala~~l~g 84 (212)
T 1tue_A 43 TFLGALKSFLKGT-PKKNCLVFCGPANTGKSYFGMSFIHFIQG 84 (212)
T ss_dssp HHHHHHHHHHHTC-TTCSEEEEESCGGGCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC-CcccEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4466666666532 22346889999999999999999887643
No 142
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.11 E-value=0.0011 Score=58.85 Aligned_cols=35 Identities=14% Similarity=-0.227 Sum_probs=26.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
..++.|+|..|+||||++..++.+...+-..++.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 46899999999999999999988764443333333
No 143
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.09 E-value=0.024 Score=53.39 Aligned_cols=53 Identities=17% Similarity=0.083 Sum_probs=35.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 195 (445)
..++.|.|.+|+||||||..++.....+-..++|+. -.-+...+...++....
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~~~ 98 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSDLT 98 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHHhh
Confidence 358999999999999999999876543222344543 23455666666655443
No 144
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.09 E-value=0.0035 Score=54.46 Aligned_cols=27 Identities=30% Similarity=0.377 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|++|.||||||+.++..+.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 346999999999999999999998764
No 145
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.08 E-value=0.0034 Score=56.86 Aligned_cols=25 Identities=24% Similarity=0.153 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||||+.++....
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 4789999999999999999988653
No 146
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.08 E-value=0.014 Score=56.41 Aligned_cols=37 Identities=16% Similarity=0.087 Sum_probs=26.2
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHh
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
+..|..+|..+-....++.|.|++|+|||||+..++-
T Consensus 164 ~~~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~ 200 (400)
T 3lda_A 164 SKNLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAV 200 (400)
T ss_dssp CHHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ChhHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3445555543222345999999999999999998764
No 147
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.08 E-value=0.0099 Score=63.73 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=38.1
Q ss_pred ccccccchhHHHHHhhhccC------CC-CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 114 KDLVGMDSCWNTLRFLMDKE------PY-GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~~------~~-~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|.+..++.+...+... .+ ....+.|+|++|+|||+||+.+++...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~ 613 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLF 613 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999998887766531 11 135788999999999999999998753
No 148
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.07 E-value=0.0038 Score=59.00 Aligned_cols=46 Identities=20% Similarity=0.274 Sum_probs=31.3
Q ss_pred chhHHHHHhhhcc--CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 120 DSCWNTLRFLMDK--EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 120 ~~~l~~l~~~L~~--~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
+.-.+.+...+.. ..+....|.|+|++|+||||+++.++..+...|
T Consensus 5 ~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 5 HKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp HHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3344444444432 233456789999999999999999988765444
No 149
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.04 E-value=0.0035 Score=53.84 Aligned_cols=28 Identities=36% Similarity=0.539 Sum_probs=23.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
++++|.|+.|+|||||++.+...+...|
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~~~~ 29 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCGGGE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccc
Confidence 4789999999999999999987665433
No 150
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.03 E-value=0.0034 Score=53.22 Aligned_cols=24 Identities=38% Similarity=0.382 Sum_probs=21.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|.|.|++|+||||+|+.++..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999988653
No 151
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.02 E-value=0.0034 Score=53.80 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=22.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||+|+.+...+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
No 152
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.01 E-value=0.0047 Score=52.25 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|++|+||||+++.+...+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998754
No 153
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.01 E-value=0.0059 Score=56.41 Aligned_cols=26 Identities=23% Similarity=0.394 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|.|.|++|+||||+|+.+...+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998764
No 154
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.01 E-value=0.042 Score=51.60 Aligned_cols=28 Identities=25% Similarity=0.270 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+++|+|+.|+||||+++.++..+..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4679999999999999999999876543
No 155
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.01 E-value=0.0027 Score=54.23 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=21.0
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|++|+||||+|+.+...+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
No 156
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.00 E-value=0.0038 Score=54.14 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=22.1
Q ss_pred EEEEEccCCCchhHHHHHHHhhccC
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.|+|.|++|+||||+|+.++..+..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCC
Confidence 5889999999999999999987643
No 157
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.98 E-value=0.0047 Score=52.91 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|++|+||||+++.++..+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999988764
No 158
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.98 E-value=0.0032 Score=54.74 Aligned_cols=24 Identities=21% Similarity=0.446 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|++|+||||+|+.+...+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998865
No 159
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.97 E-value=0.0041 Score=53.59 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|++|+||||+|+.++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999998765
No 160
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.95 E-value=0.03 Score=55.26 Aligned_cols=36 Identities=17% Similarity=0.209 Sum_probs=26.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 172 (445)
..++.|.|.+|+||||||..++...... -..++|+.
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3589999999999999999998875432 22455544
No 161
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.95 E-value=0.0052 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.202 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|+|.|++|+||||+|+.+++.+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998764
No 162
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.94 E-value=0.031 Score=55.96 Aligned_cols=53 Identities=9% Similarity=-0.063 Sum_probs=36.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceeeehhhhhhccCCHHHHHHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFLANVREISEKGGLICLQKQLLSELL 195 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~ 195 (445)
..++.|.|.+|+||||||.+++.....+ -..++|+. ...+...+...++....
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s------~E~s~~~l~~r~~~~~~ 295 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM------LEESVEETAEDLIGLHN 295 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE------SSSCHHHHHHHHHHHHT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe------ccCCHHHHHHHHHHHHc
Confidence 4588999999999999999998876543 23455654 23345566666655544
No 163
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.93 E-value=0.0034 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=18.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|.|.|++|+||||+|+.+...+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35899999999999999999987654
No 164
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.93 E-value=0.0066 Score=69.49 Aligned_cols=95 Identities=19% Similarity=0.103 Sum_probs=54.1
Q ss_pred HHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCC----CCC
Q 045345 126 LRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKL----PDT 200 (445)
Q Consensus 126 l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~----~~~ 200 (445)
|..+|. .+-...+.+.|+|++|+|||+||.+++.....+-..+.|+. ......... ++.++.. ...
T Consensus 1415 LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~----~e~~~~~l~-----a~~~G~dl~~l~v~ 1485 (2050)
T 3cmu_A 1415 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPIY-----ARKLGVDIDNLLCS 1485 (2050)
T ss_dssp HHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHHH-----HHHTTCCTTTCEEE
T ss_pred HHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE----cccccCHHH-----HHHcCCCchhceee
Confidence 444444 22223568999999999999999999887554434566665 222222222 2333211 001
Q ss_pred CCcChhhhHHHHHHHHc-cCcEEEEEcCCC
Q 045345 201 STWNVYDGLKMIGSRLR-YRKVLLIVDAAF 229 (445)
Q Consensus 201 ~~~~~~~~~~~l~~~l~-~~~~LlVlDdv~ 229 (445)
...+.++....+....+ .++-+||+|.+.
T Consensus 1486 ~~~~~E~~l~~~~~lvr~~~~~lVVIDsi~ 1515 (2050)
T 3cmu_A 1486 QPDTGEQALEICDALARSGAVDVIVVDSVA 1515 (2050)
T ss_dssp CCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEcChh
Confidence 12233444555554443 577899999984
No 165
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.93 E-value=0.0048 Score=52.84 Aligned_cols=24 Identities=33% Similarity=0.340 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|++|+||||+|+.+...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 458999999999999999999886
No 166
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.91 E-value=0.0041 Score=54.07 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|++|+|||||++.++..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhh
Confidence 4689999999999999999998765
No 167
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.91 E-value=0.015 Score=56.78 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=24.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+|+++|++|+||||++..++..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3679999999999999999999876543
No 168
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.88 E-value=0.0036 Score=52.75 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||+|+.+...+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999988653
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.88 E-value=0.0051 Score=53.23 Aligned_cols=26 Identities=12% Similarity=0.419 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++++|+|++|+|||||++.+.....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999987654
No 170
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.88 E-value=0.0056 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...|+|.|++|+||||+|+.++..+
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
No 171
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.87 E-value=0.0036 Score=54.60 Aligned_cols=26 Identities=31% Similarity=0.543 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|++|+|||||++.+...+.
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46889999999999999999988763
No 172
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.87 E-value=0.0065 Score=62.44 Aligned_cols=49 Identities=16% Similarity=0.397 Sum_probs=40.9
Q ss_pred cccccccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 111 EIFKDLVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 111 ~~~~~~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.....++|.+..++.+...+..+ ..+.|+|++|+||||||+.++..+..
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g----~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQK----RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTT----CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred cccceEECchhhHhhccccccCC----CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 44578999999999988888743 47899999999999999999986543
No 173
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.87 E-value=0.0049 Score=55.76 Aligned_cols=27 Identities=22% Similarity=0.365 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|++|+||||+|+.+...+.
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 456899999999999999999988654
No 174
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.86 E-value=0.0051 Score=52.82 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|++|+||||+|+.++..+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998764
No 175
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.84 E-value=0.0046 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||+|+.++..+.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999988653
No 176
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.79 E-value=0.0055 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.3
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.|+|.|++|+||||+|+.+...+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999988653
No 177
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.79 E-value=0.0052 Score=54.22 Aligned_cols=26 Identities=23% Similarity=0.139 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...|+|.|++|+||||+|+.++..+.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35789999999999999999988653
No 178
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.79 E-value=0.0054 Score=52.64 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+++|.|++|.|||||++.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 4789999999999999999976
No 179
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.77 E-value=0.006 Score=52.84 Aligned_cols=25 Identities=36% Similarity=0.464 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+|+|.|+.|+||||+|+.+...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC
Confidence 4578999999999999999999875
No 180
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.77 E-value=0.0059 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.110 Sum_probs=22.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|++|+||||+|+.+...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3689999999999999999998765
No 181
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.75 E-value=0.0052 Score=53.40 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|+.|+|||||++.+....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 589999999999999999998754
No 182
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.75 E-value=0.0088 Score=58.47 Aligned_cols=52 Identities=21% Similarity=0.372 Sum_probs=36.7
Q ss_pred ccccccchhHHHHHhhhcc------------CCCCeEEEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 114 KDLVGMDSCWNTLRFLMDK------------EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 114 ~~~vGr~~~l~~l~~~L~~------------~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
..++|.+...+.|...+.. .....+-+.++|++|+|||++|+.++..+...|
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~ 78 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF 78 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCc
Confidence 4578888877777554421 001234588999999999999999998765443
No 183
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.75 E-value=0.013 Score=57.39 Aligned_cols=30 Identities=30% Similarity=0.445 Sum_probs=24.0
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCccccc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEFEAS 168 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~ 168 (445)
.++|+|.+|+|||||+..+......++..+
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i 182 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQEHGGI 182 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhccCcE
Confidence 688999999999999999988755444333
No 184
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.73 E-value=0.0057 Score=53.38 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+|+|.|++|+||||+|+.+...+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 58999999999999999999987654
No 185
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.73 E-value=0.0057 Score=51.55 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=24.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.++++|.|+.|+|||||+..+...+..+
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~ 31 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVRE 31 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence 5689999999999999999998876543
No 186
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.71 E-value=0.0053 Score=54.31 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|++|+||||+|+.+...+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998754
No 187
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.71 E-value=0.006 Score=52.94 Aligned_cols=25 Identities=24% Similarity=0.127 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|++|+||||+|+.+...+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998865
No 188
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.68 E-value=0.0057 Score=53.19 Aligned_cols=21 Identities=38% Similarity=0.615 Sum_probs=19.9
Q ss_pred EEEEEccCCCchhHHHHHHHh
Q 045345 139 MIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~ 159 (445)
+|+|.|+.|+||||+++.+..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999987
No 189
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.67 E-value=0.0054 Score=51.89 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=19.4
Q ss_pred eEEEEEEccCCCchhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVY 158 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~ 158 (445)
..+++|+|++|+|||||++.++
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4689999999999999999754
No 190
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.66 E-value=0.0062 Score=52.94 Aligned_cols=24 Identities=25% Similarity=0.541 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|++|+|||||++.+....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 589999999999999999998765
No 191
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.64 E-value=0.0067 Score=55.17 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|.|.|++|+||||+|+.+...+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998864
No 192
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.64 E-value=0.0068 Score=53.01 Aligned_cols=27 Identities=37% Similarity=0.377 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|+.|+|||||++.+...+.
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987643
No 193
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.63 E-value=0.0083 Score=56.19 Aligned_cols=47 Identities=28% Similarity=0.340 Sum_probs=33.4
Q ss_pred ccccchhHHHHHhhhccC--CCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 116 LVGMDSCWNTLRFLMDKE--PYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 116 ~vGr~~~l~~l~~~L~~~--~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
++|-...+..+...+... .....+|+|.|+.|+||||||+.+...+.
T Consensus 69 ~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 69 YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 455555666555444332 33467999999999999999999877654
No 194
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.62 E-value=0.0062 Score=52.27 Aligned_cols=23 Identities=39% Similarity=0.668 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+|+|.|++|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998865
No 195
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.61 E-value=0.0065 Score=53.15 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|++|+||||+|+.+...+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999998754
No 196
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=95.61 E-value=0.0081 Score=52.39 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|++|.||||||+.+...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 5689999999999999999998753
No 197
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=95.61 E-value=0.0067 Score=52.85 Aligned_cols=22 Identities=41% Similarity=0.623 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+|+|.|+.|+||||+++.+..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 198
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.60 E-value=0.0077 Score=52.00 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+|+|+|+.|+||||+|+.+...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3679999999999999999999875
No 199
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=95.57 E-value=0.0069 Score=51.65 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=20.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++|+|+.|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 200
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.55 E-value=0.0067 Score=53.24 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 201
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.55 E-value=0.0083 Score=53.05 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|++|+|||||++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998743
No 202
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.52 E-value=0.0072 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=20.4
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998764
No 203
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.52 E-value=0.0078 Score=53.39 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...|+|.|++|+||||+|+.++..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3578999999999999999998765
No 204
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.51 E-value=0.0069 Score=54.19 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=26.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++.|.|++|+||||||..++......-..++|+.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 358999999999999999988765433223455554
No 205
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.50 E-value=0.043 Score=53.47 Aligned_cols=26 Identities=19% Similarity=0.267 Sum_probs=23.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|.|+|++|+||||+|+.++..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998754
No 206
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.47 E-value=0.0068 Score=53.55 Aligned_cols=26 Identities=19% Similarity=0.140 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...|.|.|++|+||||+|+.++..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35788999999999999999988754
No 207
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.45 E-value=0.0076 Score=52.61 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|++|+||||+|+.+...+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999988653
No 208
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.44 E-value=0.016 Score=55.23 Aligned_cols=39 Identities=21% Similarity=0.256 Sum_probs=28.3
Q ss_pred HHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 124 NTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 124 ~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+...+.....+..+|+|+|.+|+|||||+..++..+.
T Consensus 66 ~~~~~~~~~~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 66 QQLLLRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhHhhcCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 334443433334578999999999999999999887653
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.43 E-value=0.0077 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.171 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|++|+|||||++.++..+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999664
No 210
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.41 E-value=0.0094 Score=50.61 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|+.|+||||+++.+...+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999998865
No 211
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=95.40 E-value=0.029 Score=53.40 Aligned_cols=90 Identities=16% Similarity=0.150 Sum_probs=49.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccce-eeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASS-FLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL 216 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l 216 (445)
.+++|.|+.|.|||||.+.+...+.......+ .+.+..+....... ....... ...........+...|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~-~~~~~~~~~~~La~aL 193 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQRE-VHRDTLGFSEALRSAL 193 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEE-BTTTBSCHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeee-eccccCCHHHHHHHHh
Confidence 49999999999999999998876533222222 22111000000000 0000000 0011122345788888
Q ss_pred ccCcEEEEEcCCCCHHHHHHh
Q 045345 217 RYRKVLLIVDAAFDLKQLESL 237 (445)
Q Consensus 217 ~~~~~LlVlDdv~~~~~l~~l 237 (445)
...|=+|++|+..+.+.++.+
T Consensus 194 ~~~PdvillDEp~d~e~~~~~ 214 (356)
T 3jvv_A 194 REDPDIILVGEMRDLETIRLA 214 (356)
T ss_dssp TSCCSEEEESCCCSHHHHHHH
T ss_pred hhCcCEEecCCCCCHHHHHHH
Confidence 899999999999877665544
No 212
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.40 E-value=0.0083 Score=51.65 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=21.1
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|+|.|+.|+||||+|+.+.+.+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998875
No 213
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=95.39 E-value=0.009 Score=54.02 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|+.|+|||||++.++..+.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45899999999999999999997653
No 214
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.36 E-value=0.026 Score=63.88 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=59.0
Q ss_pred HHHhhhcc-CCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC----
Q 045345 125 TLRFLMDK-EPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD---- 199 (445)
Q Consensus 125 ~l~~~L~~-~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~---- 199 (445)
.|...|.. +-...++|-|+|+.|+||||||.++.......-..++|++ .....+.. .++.++...+
T Consensus 1418 ~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~----~e~~~~~~-----~~~~~Gv~~~~l~~ 1488 (1706)
T 3cmw_A 1418 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI-----YARKLGVDIDNLLC 1488 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHH-----HHHHTTCCGGGCEE
T ss_pred HHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEe----cCCCCCHH-----HHHHcCCCHHHeEE
Confidence 34455552 2234579999999999999999999876655555677776 22222222 2444442211
Q ss_pred CCCcChhhhHHHHHHHHcc-CcEEEEEcCCC
Q 045345 200 TSTWNVYDGLKMIGSRLRY-RKVLLIVDAAF 229 (445)
Q Consensus 200 ~~~~~~~~~~~~l~~~l~~-~~~LlVlDdv~ 229 (445)
..+...++....+...++. ..-+||+|-|.
T Consensus 1489 ~~p~~~e~~l~~~~~~~~s~~~~~vvvDsv~ 1519 (1706)
T 3cmw_A 1489 SQPDTGEQALEICDALARSGAVDVIVVDSVA 1519 (1706)
T ss_dssp ECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred eCCCcHHHHHHHHHHHHHcCCCCEEEEccHH
Confidence 1334445566666666654 55699999873
No 215
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.35 E-value=0.0069 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++++|+|+.|+|||||++.+...+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 578999999999999999998754
No 216
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.33 E-value=0.0096 Score=51.60 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=22.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..|+|.|+.|+||||+++.+.+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 579999999999999999999876
No 217
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.31 E-value=0.0098 Score=53.78 Aligned_cols=26 Identities=31% Similarity=0.304 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|.|.|++|+||||+|+.+...+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999988653
No 218
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.29 E-value=0.012 Score=52.07 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|.|+.|+|||||.+.+.....
T Consensus 16 G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 16 GTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 45899999999999999999988664
No 219
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.29 E-value=0.04 Score=51.00 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=23.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...+++|+|.+|+||||++..++..+..
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3568999999999999999999876543
No 220
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.29 E-value=0.013 Score=51.63 Aligned_cols=39 Identities=31% Similarity=0.292 Sum_probs=28.5
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+.+...+.. .....|+|+|.+|+|||||+..+.....
T Consensus 25 ~a~~~r~~~~~--~~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 25 LADKNRKLLNK--HGVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHH--TTCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHh--CCCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 34444444432 2467889999999999999999987643
No 221
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.27 E-value=0.064 Score=52.17 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=24.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+++|+|++|+||||++..++..+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~ 125 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGK 125 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 35789999999999999999998876543
No 222
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.27 E-value=0.008 Score=54.24 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..|+|.|++|+||||+++.++..+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998654
No 223
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.25 E-value=0.0059 Score=53.41 Aligned_cols=24 Identities=33% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|+|.|+.|+||||+|+.+...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987653
No 224
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.24 E-value=0.013 Score=51.45 Aligned_cols=43 Identities=23% Similarity=0.212 Sum_probs=30.9
Q ss_pred chhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 120 DSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 120 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
+...+.+...+.. ...++|+|+|.+|+|||||+..+.......
T Consensus 15 ~~~~~~~~~~~~~--~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~ 57 (221)
T 2wsm_A 15 KRLAEKNREALRE--SGTVAVNIMGAIGSGKTLLIERTIERIGNE 57 (221)
T ss_dssp HHHHHHHHHHHHH--HTCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhcc--cCceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence 3445555555442 246799999999999999999998765433
No 225
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.23 E-value=0.0098 Score=55.81 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=23.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++|.|.|+.|+||||||..++.++.
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC
Confidence 36899999999999999999998753
No 226
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.22 E-value=0.017 Score=52.24 Aligned_cols=38 Identities=18% Similarity=0.065 Sum_probs=29.0
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+..+|....+...-+.|+|++|.|||.+|.++++.
T Consensus 90 ~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 90 ASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 44566677654233456889999999999999999985
No 227
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.21 E-value=0.0095 Score=52.44 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..|.|.|++|+||||+|+.++..+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999998865
No 228
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.20 E-value=0.012 Score=52.94 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|.|+.|.|||||++.+...+
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
No 229
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.17 E-value=0.012 Score=51.20 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+|+|.|+.|+||||+|+.++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 899999999999999999988653
No 230
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.17 E-value=0.011 Score=55.49 Aligned_cols=25 Identities=32% Similarity=0.226 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+|+|.|++|+||||||..++..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 231
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.15 E-value=0.012 Score=55.02 Aligned_cols=27 Identities=37% Similarity=0.491 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|+.|+|||||++.+...+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 457999999999999999999987653
No 232
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.14 E-value=0.1 Score=51.87 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=22.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..++|+|+|.+|+||||++..++..+.
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~ 126 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQ 126 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999987654
No 233
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.13 E-value=0.011 Score=51.64 Aligned_cols=25 Identities=24% Similarity=0.441 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|+.|+|||||++.+...+
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998765
No 234
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.12 E-value=0.038 Score=52.99 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=49.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccce-eeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASS-FLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~-~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
..+++|+|+.|.|||||++.+...+.....+.+ ++....+....... .+....... .+.......+...
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g-~~~~~~~~~l~~~ 205 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVG-EDTKSFADALRAA 205 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBT-TTBSCSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecC-CCHHHHHHHHHHH
Confidence 468999999999999999999876543212333 22210000000000 000000000 0112234567777
Q ss_pred HccCcEEEEEcCCCCHHHHHHh
Q 045345 216 LRYRKVLLIVDAAFDLKQLESL 237 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~~~l~~l 237 (445)
+...+-+|++|.+.+.+.+...
T Consensus 206 L~~~pd~illdE~~d~e~~~~~ 227 (372)
T 2ewv_A 206 LREDPDVIFVGEMRDLETVETA 227 (372)
T ss_dssp TTSCCSEEEESCCCSHHHHHHH
T ss_pred hhhCcCEEEECCCCCHHHHHHH
Confidence 7778889999999876655443
No 235
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.12 E-value=0.012 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.372 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|++|+||||+|+.++..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998765
No 236
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.12 E-value=0.013 Score=53.92 Aligned_cols=24 Identities=29% Similarity=0.731 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
...+|+|.|++|+||||+|+.+..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 237
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.11 E-value=0.013 Score=51.20 Aligned_cols=26 Identities=27% Similarity=0.204 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|.|.|++|+||||+|+.+...+.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999988654
No 238
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.09 E-value=0.012 Score=55.02 Aligned_cols=25 Identities=32% Similarity=0.274 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
++|.|+|++|+||||||..++..+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5899999999999999999998653
No 239
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.03 E-value=0.013 Score=54.22 Aligned_cols=24 Identities=21% Similarity=0.382 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++|+|.|+.|+||||||..++..+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 588999999999999999999864
No 240
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.01 E-value=0.008 Score=55.61 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=19.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998754
No 241
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.01 E-value=0.016 Score=53.85 Aligned_cols=29 Identities=24% Similarity=0.307 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...+++|+|++|+|||||+..++..+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~ 129 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 35699999999999999999998766543
No 242
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.00 E-value=0.013 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998865
No 243
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.00 E-value=0.013 Score=52.42 Aligned_cols=24 Identities=29% Similarity=0.231 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..++.|.|.+|+|||+||.+++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458999999999999999998755
No 244
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.96 E-value=0.016 Score=50.96 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
..+|+|.|+.|+||||+++.+..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999999976
No 245
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.96 E-value=0.01 Score=52.27 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=22.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|+.|+|||||++.+...+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3589999999999999999998755
No 246
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.96 E-value=0.013 Score=51.77 Aligned_cols=23 Identities=39% Similarity=0.352 Sum_probs=20.8
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.|+|.|++|+||||+|+.++..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
No 247
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.95 E-value=0.01 Score=56.61 Aligned_cols=28 Identities=18% Similarity=-0.025 Sum_probs=23.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...++|+|++|+|||||++.+++.+...
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~ 201 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYN 201 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhc
Confidence 3588999999999999999988765443
No 248
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.95 E-value=0.014 Score=51.92 Aligned_cols=25 Identities=24% Similarity=0.078 Sum_probs=22.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..|.|.|++|+||||+|+.++..+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4788999999999999999998753
No 249
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.94 E-value=0.017 Score=48.13 Aligned_cols=26 Identities=35% Similarity=0.298 Sum_probs=23.1
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+++|.|+.|.|||||++.++..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34699999999999999999998866
No 250
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.91 E-value=0.015 Score=50.08 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.|.|.|++|+||||||.+++.+.
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 568899999999999999998763
No 251
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.84 E-value=0.014 Score=52.26 Aligned_cols=23 Identities=30% Similarity=0.271 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
..+++|.|++|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 35999999999999999999884
No 252
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.84 E-value=0.069 Score=61.34 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=57.4
Q ss_pred hhHHHHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC
Q 045345 121 SCWNTLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD 199 (445)
Q Consensus 121 ~~l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~ 199 (445)
.-...|..+|. .+-....++.|+|++|+||||||.+++......-..++|++ ........ . ++.++....
T Consensus 366 TG~~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis----~E~s~~~~--~---a~~lGvd~~ 436 (2050)
T 3cmu_A 366 TGSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI--Y---ARKLGVDID 436 (2050)
T ss_dssp CSCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC----TTSCCCHH--H---HHHTTCCTT
T ss_pred CCCHHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE----cCCCHHHH--H---HHHcCCCHH
Confidence 33445555554 22223469999999999999999999887654434566765 22222221 1 233332111
Q ss_pred ----CCCcChhhhHHHHHHHH-ccCcEEEEEcCCC
Q 045345 200 ----TSTWNVYDGLKMIGSRL-RYRKVLLIVDAAF 229 (445)
Q Consensus 200 ----~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 229 (445)
....+.++....+.... ....-+||+|-+.
T Consensus 437 ~L~I~~~~~~e~il~~~~~lv~~~~~~lIVIDSL~ 471 (2050)
T 3cmu_A 437 NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (2050)
T ss_dssp TCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGG
T ss_pred HeEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHH
Confidence 12344555555555444 3466799999874
No 253
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.79 E-value=0.017 Score=53.44 Aligned_cols=25 Identities=28% Similarity=0.254 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++|+|.|+.|+||||||..++..+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4689999999999999999999864
No 254
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.78 E-value=0.018 Score=53.86 Aligned_cols=29 Identities=31% Similarity=0.488 Sum_probs=23.7
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
++.++|+|+|=|||||||.+..++.-+..
T Consensus 46 ~~aKVIAIaGKGGVGKTTtavNLA~aLA~ 74 (314)
T 3fwy_A 46 TGAKVFAVYGKGGIGKSTTSSNLSAAFSI 74 (314)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCccCHHHHHHHHHHHHHH
Confidence 35789999999999999999887765443
No 255
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.70 E-value=0.027 Score=54.01 Aligned_cols=26 Identities=35% Similarity=0.271 Sum_probs=22.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+++|+|++|.|||||++.++...
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 45699999999999999999998754
No 256
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.68 E-value=0.01 Score=52.69 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=16.3
Q ss_pred eEEEEEEccCCCchhHHHHHHH-hhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVY-DLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~-~~~ 161 (445)
..+++|+|+.|+|||||++.+. ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3589999999999999999998 543
No 257
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.68 E-value=0.03 Score=63.41 Aligned_cols=98 Identities=18% Similarity=0.094 Sum_probs=56.1
Q ss_pred HHHHHhhhc-cCCCCeEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCC--
Q 045345 123 WNTLRFLMD-KEPYGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPD-- 199 (445)
Q Consensus 123 l~~l~~~L~-~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~-- 199 (445)
...|..+|. .+-...+++.|+|++|+||||||.+++......-..++|++ ........ .+..++....
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis----~E~s~~~~-----~a~~lGvd~~~L 438 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID----AEHALDPI-----YARKLGVDIDNL 438 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC----TTSCCCHH-----HHHHTTCCGGGC
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE----ccCchHHH-----HHHHcCCCHHHe
Confidence 445555564 22223469999999999999999999877544334567765 22222221 1233321100
Q ss_pred --CCCcChhhhHHHHHHHH-ccCcEEEEEcCCC
Q 045345 200 --TSTWNVYDGLKMIGSRL-RYRKVLLIVDAAF 229 (445)
Q Consensus 200 --~~~~~~~~~~~~l~~~l-~~~~~LlVlDdv~ 229 (445)
....+.++....+.... ..+.-+||+|-+.
T Consensus 439 ~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~ 471 (1706)
T 3cmw_A 439 LCSQPDTGEQALEICDALARSGAVDVIVVDSVA 471 (1706)
T ss_dssp EEECCSSHHHHHHHHHHHHHHTCCSEEEESCST
T ss_pred EEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHH
Confidence 12234455555555444 3466799999875
No 258
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.65 E-value=0.02 Score=53.42 Aligned_cols=27 Identities=41% Similarity=0.442 Sum_probs=23.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|+|.|+.|+|||||++.+...+.
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 457999999999999999999987654
No 259
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.63 E-value=0.018 Score=48.73 Aligned_cols=26 Identities=23% Similarity=0.405 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.++++|.|+.|+|||||+..+...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 46899999999999999999987653
No 260
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.56 E-value=0.02 Score=53.11 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+|.|.|++|+||||+|+.+...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999874
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.56 E-value=0.012 Score=49.66 Aligned_cols=25 Identities=28% Similarity=0.391 Sum_probs=22.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
++++|+|..|+|||||++.+...+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987654
No 262
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.54 E-value=0.022 Score=51.72 Aligned_cols=90 Identities=16% Similarity=0.136 Sum_probs=47.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhc-cCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHH
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISE-KGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSR 215 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~-~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~ 215 (445)
..+++|+|+.|.|||||++.+...+...+.+.+++.... +.. ..... .+........ +.......+.+.
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~-i~~~~~~~~--------~~v~q~~~gl-~~~~l~~~la~a 94 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP-IEYVFKHKK--------SIVNQREVGE-DTKSFADALRAA 94 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS-CCSCCCCSS--------SEEEEEEBTT-TBSCHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc-ceeecCCcc--------eeeeHHHhCC-CHHHHHHHHHHH
Confidence 469999999999999999998876533223333332100 000 00000 0000000000 001234556677
Q ss_pred HccCcEEEEEcCCCCHHHHHH
Q 045345 216 LRYRKVLLIVDAAFDLKQLES 236 (445)
Q Consensus 216 l~~~~~LlVlDdv~~~~~l~~ 236 (445)
|...+=+|++|+..+.+....
T Consensus 95 L~~~p~illlDEp~D~~~~~~ 115 (261)
T 2eyu_A 95 LREDPDVIFVGEMRDLETVET 115 (261)
T ss_dssp HHHCCSEEEESCCCSHHHHHH
T ss_pred HhhCCCEEEeCCCCCHHHHHH
Confidence 777888899999876655443
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.51 E-value=0.017 Score=49.66 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.2
Q ss_pred EEEEEccCCCchhHHHHHHHhhcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+++|+|+.|+|||||++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999987653
No 264
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.47 E-value=0.028 Score=56.01 Aligned_cols=48 Identities=10% Similarity=-0.038 Sum_probs=32.9
Q ss_pred ccccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 116 LVGMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 116 ~vGr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...|.+..+.+.+..........+|.+.|++|+||||+|+.++.++..
T Consensus 374 ~f~rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 374 WFSYPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TTSCHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cccChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 344444455555544321223468899999999999999999998753
No 265
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=94.45 E-value=0.045 Score=48.56 Aligned_cols=27 Identities=33% Similarity=0.374 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...|+|.|++|+||||+++.+...+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 468999999999999999999988754
No 266
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.43 E-value=0.019 Score=50.16 Aligned_cols=23 Identities=30% Similarity=0.154 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|.|||||++.++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999998764
No 267
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.42 E-value=0.021 Score=52.78 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+++|.|++|+|||||++.++..+.
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999987654
No 268
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.41 E-value=0.032 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++.+.|.||+|||||+..++..+.
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~ 39 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE 39 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 357889999999999999999986654
No 269
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.38 E-value=0.036 Score=48.76 Aligned_cols=26 Identities=15% Similarity=0.098 Sum_probs=21.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
.|.+.|.||+||||+|..++.....+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 47789999999999999988875443
No 270
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.37 E-value=0.025 Score=52.50 Aligned_cols=26 Identities=31% Similarity=0.245 Sum_probs=23.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|+|+.|+||||+++.++..+.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999987654
No 271
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.37 E-value=0.026 Score=48.49 Aligned_cols=34 Identities=21% Similarity=0.047 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
..|.|++-.|.||||+|...+-+...+--.++++
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4566777777999999988887643332234444
No 272
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=94.32 E-value=0.027 Score=50.23 Aligned_cols=26 Identities=27% Similarity=0.290 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|+|.|+.|+||||+++.++..+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35689999999999999999998755
No 273
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.32 E-value=0.02 Score=50.66 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=25.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 64 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLDAP-TEGKVFLE 64 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEEC
Confidence 48999999999999999998765432 23445443
No 274
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.31 E-value=0.02 Score=51.06 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=25.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~p-~~G~I~~~ 65 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDKP-TEGEVYID 65 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CceEEEEC
Confidence 48999999999999999998765433 23445553
No 275
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.26 E-value=0.024 Score=50.79 Aligned_cols=25 Identities=16% Similarity=0.301 Sum_probs=22.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+++|.|+.|.|||||.+.++.-+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999987543
No 276
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.21 E-value=0.026 Score=50.78 Aligned_cols=33 Identities=27% Similarity=0.405 Sum_probs=26.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+... +.+++.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~~p~--G~i~~~ 59 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMTSGK--GSIQFA 59 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCCE--EEEEET
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC--eEEEEC
Confidence 489999999999999999998766554 555554
No 277
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=94.20 E-value=0.093 Score=49.32 Aligned_cols=83 Identities=19% Similarity=0.155 Sum_probs=48.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHHc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRLR 217 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l~ 217 (445)
..++|+|+.|.|||||++.+...+.. ..+.+.+....+..... .. ..+.-.. ..-......+...|.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~-~~g~i~i~~~~e~~~~~-~~-------~~i~~~~----ggg~~~r~~la~aL~ 238 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPK-EERIISIEDTEEIVFKH-HK-------NYTQLFF----GGNITSADCLKSCLR 238 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCT-TSCEEEEESSCCCCCSS-CS-------SEEEEEC----BTTBCHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcC-CCcEEEECCeecccccc-ch-------hEEEEEe----CCChhHHHHHHHHhh
Confidence 48999999999999999999876543 23455554321111000 00 0000000 011233455677778
Q ss_pred cCcEEEEEcCCCCHHH
Q 045345 218 YRKVLLIVDAAFDLKQ 233 (445)
Q Consensus 218 ~~~~LlVlDdv~~~~~ 233 (445)
..+=+|++|++.+.+.
T Consensus 239 ~~p~ilildE~~~~e~ 254 (330)
T 2pt7_A 239 MRPDRIILGELRSSEA 254 (330)
T ss_dssp SCCSEEEECCCCSTHH
T ss_pred hCCCEEEEcCCChHHH
Confidence 8888999999876443
No 278
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.18 E-value=0.027 Score=54.13 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++|+|.|+.|+||||||..++..+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 588999999999999999998864
No 279
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.17 E-value=0.027 Score=48.29 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||.+.+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457899999999999999999875
No 280
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.12 E-value=0.064 Score=54.00 Aligned_cols=38 Identities=21% Similarity=0.188 Sum_probs=27.0
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.+...|..+-....+++|.|++|+|||||++.++....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34444442222345899999999999999999987644
No 281
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.06 E-value=0.033 Score=45.76 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+.|+|.|.+|+|||||...+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46889999999999999999764
No 282
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.06 E-value=0.025 Score=50.59 Aligned_cols=24 Identities=21% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|+|+.|.|||||++.++.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997643
No 283
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.05 E-value=0.027 Score=55.03 Aligned_cols=27 Identities=30% Similarity=0.342 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.++|+|+|.+|+||||++..++..+..
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~ 125 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQK 125 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999876543
No 284
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.04 E-value=0.034 Score=46.26 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..|+|.|.+|+|||||...+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57899999999999999999763
No 285
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.01 E-value=0.025 Score=51.74 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|+.|.|||||++.++.-+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999987643
No 286
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.01 E-value=0.027 Score=51.56 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+++|+|++|+|||||+..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999886543
No 287
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.99 E-value=0.025 Score=51.33 Aligned_cols=35 Identities=29% Similarity=0.368 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 66 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEKP-SEGAIIVN 66 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 358999999999999999998875432 23445543
No 288
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.99 E-value=0.03 Score=47.90 Aligned_cols=24 Identities=25% Similarity=0.144 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++.|+|+.|+||||++..++.+.
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999999997777654
No 289
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=93.93 E-value=0.036 Score=48.12 Aligned_cols=26 Identities=19% Similarity=0.124 Sum_probs=23.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+|+|.|+.|+||||+|+.++.++.-
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~ 32 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNI 32 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCc
Confidence 58999999999999999999998743
No 290
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.92 E-value=0.03 Score=50.46 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|.|||||.+.++.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999874
No 291
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.91 E-value=0.042 Score=49.87 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=25.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
++|+|.|-||+||||+|..++..+...-..++.++
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD 36 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG 36 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence 57888999999999999999887654322344443
No 292
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.91 E-value=0.027 Score=51.28 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=25.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.+++|.|+.|.|||||++.++.-+.. ..+.+++
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~I~~ 70 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYLSP-SHGECHL 70 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSSCC-SSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCC-CCcEEEE
Confidence 48999999999999999999865432 2344444
No 293
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.90 E-value=0.025 Score=48.09 Aligned_cols=21 Identities=38% Similarity=0.472 Sum_probs=19.2
Q ss_pred EEEEEccCCCchhHHHHHHHh
Q 045345 139 MIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.|+|+|.+|+|||||...+..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478999999999999999876
No 294
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.89 E-value=0.028 Score=50.36 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=25.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~ 66 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLVRA-QKGKIIFN 66 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 48999999999999999998875432 23445543
No 295
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.88 E-value=0.075 Score=46.55 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...|+|.|+.|+||||+++.+.+.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 3588999999999999999999877543
No 296
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.86 E-value=0.035 Score=52.75 Aligned_cols=27 Identities=30% Similarity=0.251 Sum_probs=23.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+++|+|+.|+||||+++.++..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 579999999999999999999886543
No 297
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.86 E-value=0.028 Score=50.91 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=25.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~~p-~~G~i~~~ 67 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFLKA-DEGRVYFE 67 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEEC
Confidence 48999999999999999999875432 23444443
No 298
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.84 E-value=0.038 Score=49.39 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..|+|.|..|+||||+++.++..+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999998764
No 299
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.83 E-value=0.034 Score=47.88 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 300
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.81 E-value=0.038 Score=51.38 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=27.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++|+|+|-||+||||+|..++..+...-..++.++
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4678889999999999999998876544322344443
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.80 E-value=0.029 Score=50.95 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=26.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~~ 84 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLEDF-DEGEIIID 84 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEEC
Confidence 358999999999999999998865433 23445543
No 302
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.80 E-value=0.024 Score=49.73 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|+.|.|||||.+.++.-+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999987654
No 303
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.79 E-value=0.032 Score=50.78 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=25.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhhcc-Cccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-.. ....+.+++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~ 82 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEEC
Confidence 4899999999999999999987531 1223445543
No 304
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.78 E-value=0.032 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=21.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|+.|.|||||.+.++.-+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999987643
No 305
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.77 E-value=0.03 Score=50.38 Aligned_cols=34 Identities=26% Similarity=0.482 Sum_probs=25.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~~p-~~G~I~i~ 69 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFYIP-ENGQVLID 69 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC-CCcEEEEC
Confidence 48999999999999999998775432 23445543
No 306
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.77 E-value=0.03 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.497 Sum_probs=21.5
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|+.|.|||||.+.++.-+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998754
No 307
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.75 E-value=0.16 Score=44.04 Aligned_cols=29 Identities=31% Similarity=0.480 Sum_probs=24.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFE 166 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~ 166 (445)
..|+|-|.-|+||||+++.+++.+...++
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~ 31 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYD 31 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSC
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCC
Confidence 46889999999999999999988765443
No 308
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=93.74 E-value=0.23 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=22.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.|.+|+|||+|+..+++.+..
T Consensus 154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~ 179 (482)
T 2ck3_D 154 GKIGLFGGAGVGKTVLIMELINNVAK 179 (482)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTT
T ss_pred CeeeeecCCCCChHHHHHHHHHhhHh
Confidence 47899999999999999999887543
No 309
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.71 E-value=0.031 Score=50.56 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=25.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 74 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIKP-SSGIVTV 74 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCC-CceEEEE
Confidence 48999999999999999998865432 2344444
No 310
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.69 E-value=0.036 Score=51.39 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|+.|.|||||++.+..-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4589999999999999999988654
No 311
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.68 E-value=0.043 Score=46.76 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998864
No 312
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.67 E-value=0.058 Score=51.01 Aligned_cols=27 Identities=26% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
....+|+|.|.+|+|||||+..+...+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999987654
No 313
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.65 E-value=0.044 Score=55.29 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=23.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..+++|+|+.|+|||||++.++..+..
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 468999999999999999999987653
No 314
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.62 E-value=0.055 Score=53.44 Aligned_cols=26 Identities=27% Similarity=0.419 Sum_probs=22.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
+.+.|.|.+|+|||+++..+...+..
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~ 71 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALIS 71 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 38899999999999999998887543
No 315
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.62 E-value=0.033 Score=50.53 Aligned_cols=33 Identities=24% Similarity=0.464 Sum_probs=25.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+++|+|+.|.|||||.+.++.-+.. .+.+++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~~~--~G~I~i~ 79 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFYDA--EGDIKIG 79 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSCC--EEEEEET
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC--CeEEEEC
Confidence 48999999999999999999875542 4555553
No 316
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=93.60 E-value=0.026 Score=57.69 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=35.3
Q ss_pred cccccccchhHHHHHhhhccCCCC---------eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 113 FKDLVGMDSCWNTLRFLMDKEPYG---------VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 113 ~~~~vGr~~~l~~l~~~L~~~~~~---------~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+.++|.+...+.+...+..+... ..-|.|+|++|+|||+||+.+++..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~ 351 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVA 351 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTC
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhC
Confidence 356899998777776555533100 0147899999999999999998764
No 317
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.59 E-value=0.043 Score=50.45 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.++|+|.|-||+||||+|..++..+..
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~ 28 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAE 28 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHH
Confidence 367888999999999999998876543
No 318
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=93.59 E-value=0.036 Score=48.60 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+|+|.|+.|+||||+|+.+...+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 378999999999999999998764
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.58 E-value=0.033 Score=50.82 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=25.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
..+++|+|+.|.|||||++.++.-+.. ..+.+++
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~p-~~G~I~~ 78 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQP-TGGKVLL 78 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCC-CCCEEEE
Confidence 358999999999999999999875432 2344444
No 320
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.58 E-value=0.04 Score=54.40 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=26.7
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
...+++|+|++|+|||||++.++..+... .+.+++
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~-~G~V~l 326 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQ-GKSVML 326 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhc-CCeEEE
Confidence 35699999999999999999998765432 234444
No 321
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.57 E-value=0.04 Score=48.73 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
-.++|.|++|+||||+|+.++..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998765
No 322
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.57 E-value=0.047 Score=46.21 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999863
No 323
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=93.56 E-value=0.055 Score=51.24 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=28.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc--Cccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 172 (445)
..+++.+.|-||+||||+|..++..+. ..-..++.++
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid 55 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS 55 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 457999999999999999999987765 4433444444
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.54 E-value=0.05 Score=45.63 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.6
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+-|.|.|.+|+||||||.++..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999999874
No 325
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.53 E-value=0.044 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999988853
No 326
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.51 E-value=0.036 Score=50.06 Aligned_cols=23 Identities=26% Similarity=0.600 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|.|||||.+.++.-
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999998764
No 327
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.49 E-value=0.035 Score=50.50 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|+.|.|||||.+.++.-+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999987643
No 328
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.47 E-value=0.035 Score=50.86 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=25.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.+++|.|+.|.|||||.+.++.-+.. ..+.+++
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~p-~~G~I~~ 80 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEPA-TSGTVNL 80 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSCC-SEEEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC-CCeEEEE
Confidence 48999999999999999999875433 2344444
No 329
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.44 E-value=0.054 Score=44.70 Aligned_cols=24 Identities=17% Similarity=0.307 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||||...+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 330
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=93.44 E-value=0.081 Score=52.01 Aligned_cols=35 Identities=29% Similarity=0.289 Sum_probs=26.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc-cccceee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE-FEASSFL 171 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-f~~~~~~ 171 (445)
...++|.|.+|+|||+|+..+.+.+... -+.++|+
T Consensus 165 Gqr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~ 200 (498)
T 1fx0_B 165 GGKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG 200 (498)
T ss_dssp TCCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEE
T ss_pred CCeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEE
Confidence 3478999999999999999999876433 2334444
No 331
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.42 E-value=0.087 Score=46.42 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.4
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
....|+|.|+.|+||||+++.+.+.+..
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3568999999999999999999987654
No 332
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.42 E-value=0.042 Score=45.14 Aligned_cols=22 Identities=27% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|++.|.+|+|||||+..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999764
No 333
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.40 E-value=0.053 Score=45.14 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||||...+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 346889999999999999998754
No 334
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=93.39 E-value=0.069 Score=50.27 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=28.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++.+.|-||+||||+|..++..+...-..++.++
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 3578889999999999999999887665444455554
No 335
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=93.38 E-value=0.066 Score=50.51 Aligned_cols=26 Identities=31% Similarity=0.465 Sum_probs=22.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+++|.|++|+|||||...+...+
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 45799999999999999999998643
No 336
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.37 E-value=0.068 Score=45.16 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998764
No 337
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=93.32 E-value=0.036 Score=53.78 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+++|.|+.|+|||||.+.+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 4569999999999999999999873
No 338
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.30 E-value=0.04 Score=48.85 Aligned_cols=25 Identities=28% Similarity=0.104 Sum_probs=22.1
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...+|+|.|+.|.|||||++.+...
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 3569999999999999999998775
No 339
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=93.28 E-value=0.27 Score=58.49 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=0.0
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHHHHH---
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIGSRL--- 216 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~~~l--- 216 (445)
|.++|++|+|||+||+.+.......-...+-.. ...+.......+...+
T Consensus 1270 vLL~GPpGtGKT~la~~~l~~~~~~~~~~infs----------------------------a~ts~~~~~~~i~~~~~~~ 1321 (2695)
T 4akg_A 1270 IILCGPPGSGKTMIMNNALRNSSLYDVVGINFS----------------------------KDTTTEHILSALHRHTNYV 1321 (2695)
T ss_dssp EEEECSTTSSHHHHHHHHHHSCSSCEEEEEECC----------------------------TTCCHHHHHHHHHHHBCCE
T ss_pred EEEECCCCCCHHHHHHHHHhcCCCCceEEEEee----------------------------cCCCHHHHHHHHHHHhhhc
Q ss_pred ------------ccCcEEEEEcCCC-----------CHHHHHHhcCCCCCc-----------CcccccccCCC-------
Q 045345 217 ------------RYRKVLLIVDAAF-----------DLKQLESLAGKHEWF-----------DEHLLMTHGVD------- 255 (445)
Q Consensus 217 ------------~~~~~LlVlDdv~-----------~~~~l~~l~~~~~~~-----------~~~vl~t~~~~------- 255 (445)
.+++.+|.+||++ -.+.++.++....+. +-.++.++...
T Consensus 1322 ~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~ 1401 (2695)
T 4akg_A 1322 TTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIP 1401 (2695)
T ss_dssp EETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCC
T ss_pred cccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCcc
Q ss_pred ---------ceEEcCCCCHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHh
Q 045345 256 ---------EVHKLKVLHDDEALQLFCKQAFKTNQPWKEYEQLSKYVVKYS 297 (445)
Q Consensus 256 ---------~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~~i~~~~ 297 (445)
.++.++.++.++-.++|......--...++...++..++..+
T Consensus 1402 l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~l~~~~~v~~~~~~lv~at 1452 (2695)
T 4akg_A 1402 MSERFTRHAAILYLGYPSGKSLSQIYEIYYKAIFKLVPEFRSYTEPFARAS 1452 (2695)
T ss_dssp CCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHHTTSSGGGGGGHHHHHHHH
T ss_pred CChhhhheeeEEEeCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
No 340
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=93.26 E-value=0.052 Score=54.50 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|.++|++|.||||+|+.++..+.
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~ 60 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLN 60 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999987653
No 341
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=93.26 E-value=0.063 Score=47.90 Aligned_cols=33 Identities=24% Similarity=0.536 Sum_probs=24.8
Q ss_pred EEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 140 IGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
|+|.|-||+||||+|..++..+...-..++.++
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 566999999999999999987665433444444
No 342
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=93.25 E-value=0.063 Score=50.21 Aligned_cols=26 Identities=31% Similarity=0.416 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..++++|+|+.|.|||||.+.+....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 46899999999999999999998653
No 343
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.22 E-value=0.09 Score=53.36 Aligned_cols=27 Identities=22% Similarity=0.121 Sum_probs=23.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...+|.|.|++|+||||+|+.+...+.
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 346899999999999999999998754
No 344
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.21 E-value=0.048 Score=49.70 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=20.6
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.++|+|+.|+|||||.+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998753
No 345
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.16 E-value=0.035 Score=50.33 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=23.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...|+|.|..|+||||+|+.+.+.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987663
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.13 E-value=0.051 Score=46.01 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=20.5
Q ss_pred EEEEEccCCCchhHHHHHHHhhc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+.+|+|+.|.|||||+.+++.-+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 88999999999999999987643
No 347
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=93.10 E-value=0.074 Score=45.94 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=22.7
Q ss_pred EEEEEccCCCchhHHHHHHHhhccCcc
Q 045345 139 MIGICGMGGIGKTTLARVVYDLSSHEF 165 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~~~~~f 165 (445)
.|+|-|.-|+||||.++.+++.+....
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~~g 28 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRG 28 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 477889999999999999998875543
No 348
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.09 E-value=0.083 Score=47.02 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=23.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...|+|.|+.|+||||+++.+...+..
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~ 53 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETLQQ 53 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 458999999999999999999987643
No 349
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.09 E-value=0.049 Score=46.24 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||+..+...
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 350
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.08 E-value=0.074 Score=43.73 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999999864
No 351
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.08 E-value=0.049 Score=45.70 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..|+|+|.+|+|||||...+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46789999999999999999864
No 352
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=93.07 E-value=0.082 Score=49.58 Aligned_cols=36 Identities=22% Similarity=0.313 Sum_probs=26.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++...|-||+||||+|..++..+...-..++.++
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 467778899999999999999877654433444444
No 353
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=93.04 E-value=0.059 Score=45.91 Aligned_cols=25 Identities=20% Similarity=0.488 Sum_probs=21.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+...|+|+|.+|+|||||...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567889999999999999999764
No 354
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.01 E-value=0.047 Score=49.58 Aligned_cols=32 Identities=34% Similarity=0.508 Sum_probs=24.7
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFL 171 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~ 171 (445)
.+++|.|+.|.|||||.+.++.-. . ..+.+++
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~-p-~~G~I~~ 62 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL-P-YSGNIFI 62 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS-C-CEEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC-C-CCcEEEE
Confidence 489999999999999999998755 2 3344444
No 355
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.00 E-value=0.053 Score=44.59 Aligned_cols=23 Identities=26% Similarity=0.397 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|.|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999998764
No 356
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.99 E-value=0.079 Score=44.28 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=21.7
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567889999999999999998864
No 357
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.99 E-value=0.058 Score=45.10 Aligned_cols=25 Identities=28% Similarity=0.267 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|.|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567889999999999999999763
No 358
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=92.98 E-value=0.087 Score=46.86 Aligned_cols=36 Identities=22% Similarity=0.148 Sum_probs=25.5
Q ss_pred eEEEEEE-ccCCCchhHHHHHHHhhccCc-cccceeee
Q 045345 137 VRMIGIC-GMGGIGKTTLARVVYDLSSHE-FEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~-G~gGiGKTtLA~~~~~~~~~~-f~~~~~~~ 172 (445)
.++|+|+ +-||+||||+|..++..+... -..++.++
T Consensus 4 ~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 4 KRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred CeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 4677777 568999999999999877654 23344443
No 359
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.96 E-value=0.053 Score=45.89 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 446789999999999999999864
No 360
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=92.94 E-value=0.055 Score=44.61 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.6
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-|+|.|.+|+|||||...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999999864
No 361
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=92.93 E-value=0.08 Score=46.83 Aligned_cols=28 Identities=29% Similarity=0.341 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
...|+|.|+.|+||||+++.+++.+...
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~ 52 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQER 52 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 4589999999999999999999887543
No 362
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.91 E-value=0.06 Score=46.91 Aligned_cols=25 Identities=28% Similarity=0.163 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|++|+|||||...+...
T Consensus 11 ~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 11 YQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3567889999999999999999875
No 363
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=92.90 E-value=0.054 Score=44.85 Aligned_cols=23 Identities=26% Similarity=0.470 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35789999999999999999863
No 364
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=92.89 E-value=0.056 Score=44.75 Aligned_cols=24 Identities=25% Similarity=0.274 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998864
No 365
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=92.86 E-value=0.055 Score=44.73 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|.|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46789999999999999999864
No 366
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.85 E-value=0.066 Score=45.53 Aligned_cols=26 Identities=31% Similarity=0.216 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
.--|+|+|.+|+|||||.+.+.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 34678999999999999977765543
No 367
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=92.85 E-value=0.47 Score=48.95 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=25.5
Q ss_pred chhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 120 DSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 120 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
+.+.+.+...|... .+..|+||||.|||+.+.++...
T Consensus 192 ~~Q~~AV~~al~~~----~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 192 TSQKEAVLFALSQK----ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHHCS----SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC----CceEEECCCCCCHHHHHHHHHHH
Confidence 34566777777522 37789999999999765554443
No 368
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.84 E-value=0.059 Score=44.35 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.4
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-|+|.|.+|+|||||...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
No 369
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.84 E-value=0.055 Score=51.36 Aligned_cols=22 Identities=41% Similarity=0.564 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+++|.|+.|.|||||.+.++-
T Consensus 31 e~~~llGpsGsGKSTLLr~iaG 52 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAG 52 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEEECCCCchHHHHHHHHhc
Confidence 4899999999999999999976
No 370
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.84 E-value=0.052 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.7
Q ss_pred EEEEEccCCCchhHHHHHHHh
Q 045345 139 MIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.|+|+|.+|+|||||...+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478999999999999998864
No 371
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.83 E-value=0.07 Score=47.07 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=23.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|+|.|+.|+||||+|+.++..+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg 39 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELG 39 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence 46999999999999999999998764
No 372
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=92.82 E-value=0.092 Score=49.78 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
....++.+.|-||+||||+|..++..+...-..++.++
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34567778899999999999998876544322334443
No 373
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.81 E-value=0.074 Score=43.99 Aligned_cols=22 Identities=32% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
--|+|.|.+|+|||||...+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 3578999999999999999864
No 374
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.81 E-value=0.088 Score=53.10 Aligned_cols=41 Identities=15% Similarity=0.085 Sum_probs=28.2
Q ss_pred hHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+.+.+..........+|.|.|++|+||||+|+.+...+.
T Consensus 357 V~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~ 397 (546)
T 2gks_A 357 VAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ 397 (546)
T ss_dssp HHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence 33444444421122346899999999999999999988653
No 375
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.80 E-value=0.059 Score=44.53 Aligned_cols=22 Identities=14% Similarity=0.246 Sum_probs=19.5
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-|+|.|.+|+|||||...+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999998764
No 376
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.78 E-value=0.058 Score=45.79 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.4
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999888764
No 377
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=92.76 E-value=1.1 Score=42.01 Aligned_cols=143 Identities=12% Similarity=0.001 Sum_probs=79.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc-CccccceeeehhhhhhccCCHHHHHHHHHHHHhCCCCCCCcChhhhHHHHH-H
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS-HEFEASSFLANVREISEKGGLICLQKQLLSELLKLPDTSTWNVYDGLKMIG-S 214 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~f~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~~~~~~~l~-~ 214 (445)
.++..++|+.|.||++.+..+...+. ..|+....+. .....++..+.. .+. .
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~----------------------~~~~~ 71 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFS----------------------LCQAM 71 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHH----------------------HHHHH
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHH----------------------HhcCc
Confidence 46889999999999999999987643 2232211111 111122222221 111 1
Q ss_pred HHccCcEEEEEcCCCC-H--H---HHHHhcCCCCCcC---------------ccccccc-CCCceEEcCCCCHHHHHHHH
Q 045345 215 RLRYRKVLLIVDAAFD-L--K---QLESLAGKHEWFD---------------EHLLMTH-GVDEVHKLKVLHDDEALQLF 272 (445)
Q Consensus 215 ~l~~~~~LlVlDdv~~-~--~---~l~~l~~~~~~~~---------------~~vl~t~-~~~~~~~l~~L~~~ea~~Lf 272 (445)
-+-+.+-++|+|+++. . + .+..++..++... ..+..+. .....++..+++.++..+++
T Consensus 72 plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l 151 (343)
T 1jr3_D 72 SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWV 151 (343)
T ss_dssp HHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHH
T ss_pred CCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHH
Confidence 1234566778888754 2 2 2333333222111 1222221 12356899999999999888
Q ss_pred HHhhcCCCCCchHHHHHHHHHHHHhCCChHHHHHH
Q 045345 273 CKQAFKTNQPWKEYEQLSKYVVKYSGGLPLALKVL 307 (445)
Q Consensus 273 ~~~a~~~~~~~~~~~~~~~~i~~~~~GlPLal~~~ 307 (445)
...+-..+.. -..+.+..+++.++|.+..+...
T Consensus 152 ~~~~~~~g~~--i~~~a~~~l~~~~~gdl~~~~~e 184 (343)
T 1jr3_D 152 AARAKQLNLE--LDDAANQVLCYCYEGNLLALAQA 184 (343)
T ss_dssp HHHHHHTTCE--ECHHHHHHHHHSSTTCHHHHHHH
T ss_pred HHHHHHcCCC--CCHHHHHHHHHHhchHHHHHHHH
Confidence 7766332211 12356788999999998877643
No 378
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.75 E-value=0.063 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.284 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||||...+...
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346789999999999999998764
No 379
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=92.74 E-value=0.11 Score=47.02 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=25.8
Q ss_pred HHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 125 TLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 125 ~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
++...+.........|+|+|.+|+|||||...+...
T Consensus 24 ~~~~~~~~~~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 24 EFFGKLKQKDMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp HHHHHHHHTTCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 333333333334567889999999999999999864
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.73 E-value=0.068 Score=50.72 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=22.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|+|+|.+|+|||||...+....
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 46799999999999999999998643
No 381
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=92.71 E-value=0.092 Score=51.69 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchhHHHH-HHHhhc
Q 045345 138 RMIGICGMGGIGKTTLAR-VVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~-~~~~~~ 161 (445)
..++|.|.+|+|||+||. .+++..
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~~~ 187 (502)
T 2qe7_A 163 QRELIIGDRQTGKTTIAIDTIINQK 187 (502)
T ss_dssp CBCEEEECSSSCHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCchHHHHHHHHHhh
Confidence 477899999999999964 666654
No 382
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=92.68 E-value=0.071 Score=45.27 Aligned_cols=24 Identities=17% Similarity=0.440 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999865
No 383
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.67 E-value=0.043 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.570 Sum_probs=21.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|+|+.|.|||||++.+..-+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3589999999999999999987643
No 384
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.66 E-value=0.081 Score=44.27 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3557889999999999999998764
No 385
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.62 E-value=0.054 Score=45.38 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
--|+|.|.+|+|||+|...+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45789999999999999999864
No 386
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.62 E-value=0.056 Score=49.82 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=21.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+++|.|+.|.|||||.+.++.-+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999997643
No 387
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.61 E-value=0.074 Score=44.47 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|.|.+|+|||||...+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4567889999999999999998753
No 388
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=92.61 E-value=0.064 Score=44.79 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999764
No 389
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.59 E-value=0.064 Score=45.62 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 346789999999999999998764
No 390
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.58 E-value=0.063 Score=45.79 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..|+|.|.+|+|||||...+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999999864
No 391
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=92.58 E-value=0.065 Score=44.22 Aligned_cols=23 Identities=17% Similarity=0.184 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999999863
No 392
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.57 E-value=0.063 Score=51.03 Aligned_cols=24 Identities=42% Similarity=0.617 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+++|.|+.|.|||||.+.+..-
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcC
Confidence 358999999999999999998763
No 393
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=92.55 E-value=0.1 Score=48.42 Aligned_cols=33 Identities=15% Similarity=0.196 Sum_probs=26.0
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
+++|...+. ..+++|.|++|+|||||.+.+. ..
T Consensus 156 i~~L~~~l~-----G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 156 IDELVDYLE-----GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp HHHHHHHTT-----TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred HHHHHhhcc-----CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 556666554 2488999999999999999998 54
No 394
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.51 E-value=0.061 Score=45.49 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=19.6
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.|+|.|.+|+|||||...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4789999999999999998864
No 395
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.51 E-value=0.29 Score=50.26 Aligned_cols=38 Identities=18% Similarity=0.145 Sum_probs=27.4
Q ss_pred chhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 120 DSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 120 ~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
+.+.+.+...+. .++..|+|++|.|||+++..+...+.
T Consensus 183 ~~Q~~av~~~l~-----~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 183 HSQVYAVKTVLQ-----RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp HHHHHHHHHHHT-----CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-----CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 445566666554 23678999999999998887776543
No 396
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.51 E-value=0.065 Score=50.82 Aligned_cols=23 Identities=43% Similarity=0.768 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|+|||||.+.++--
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 48999999999999999999763
No 397
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=92.50 E-value=0.082 Score=45.56 Aligned_cols=35 Identities=23% Similarity=0.183 Sum_probs=25.2
Q ss_pred EEEEEE-ccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGIC-GMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~-G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
++|+|+ +-||+||||+|..++..+...-..++.++
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 567777 77999999999999887654333445554
No 398
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.43 E-value=0.076 Score=52.60 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
..+|.++|++|+||||+++.++..+.
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45788999999999999999987654
No 399
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.42 E-value=0.068 Score=44.99 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456789999999999999999864
No 400
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=92.41 E-value=0.13 Score=46.80 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 135 YGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 135 ~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.....|+++|.+|+|||||...++..
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 34567889999999999999999864
No 401
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=92.39 E-value=0.068 Score=45.75 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.--|+|+|.+|+|||||...+..
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 34688999999999999999874
No 402
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.38 E-value=0.068 Score=51.11 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+++|.|+.|.|||||.+.++-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaG 51 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAG 51 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHT
T ss_pred CEEEEEcCCCchHHHHHHHHHc
Confidence 4899999999999999999976
No 403
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.36 E-value=0.066 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS 162 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 162 (445)
...++|+|+.|.|||||++.++..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 404
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.33 E-value=0.07 Score=50.69 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|.|||||.+.++--
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 58999999999999999999763
No 405
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=92.32 E-value=0.085 Score=53.85 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
...+|.|.|++|+||||+|+.+.+.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998876
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.31 E-value=0.13 Score=44.92 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..|+|-|+.|+||||+++.+.+.+..
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l~~ 29 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETLEQ 29 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47899999999999999999987644
No 407
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=92.30 E-value=0.097 Score=43.20 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
--|+|+|.+|+|||||...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 45789999999999999998754
No 408
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=92.28 E-value=0.33 Score=43.05 Aligned_cols=39 Identities=21% Similarity=-0.038 Sum_probs=28.0
Q ss_pred ccchhHHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 118 GMDSCWNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 118 Gr~~~l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
=|+.+.+.+..++.. + -+.|+|+.|.|||.+|..++...
T Consensus 94 l~~~Q~~ai~~~~~~---~--~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 94 LRDYQEKALERWLVD---K--RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp CCHHHHHHHHHHTTT---S--EEEEEESSSTTHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHhC---C--CEEEEeCCCCCHHHHHHHHHHHc
Confidence 345556666666542 1 27789999999999998887765
No 409
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.28 E-value=0.073 Score=45.06 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999999864
No 410
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=92.27 E-value=0.074 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|.|.+|+|||||...+...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35789999999999999999864
No 411
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.25 E-value=0.072 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+++|.|+.|.|||||.+.++.-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 358999999999999999999763
No 412
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.24 E-value=0.1 Score=43.54 Aligned_cols=24 Identities=25% Similarity=0.245 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999864
No 413
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.23 E-value=0.075 Score=45.25 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 456889999999999999998864
No 414
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=92.23 E-value=0.15 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.216 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchhHHHH-HHHhhc
Q 045345 138 RMIGICGMGGIGKTTLAR-VVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~-~~~~~~ 161 (445)
..++|.|.+|+|||+||. .+++..
T Consensus 176 QR~~I~g~~g~GKT~Lal~~I~~~~ 200 (515)
T 2r9v_A 176 QRELIIGDRQTGKTAIAIDTIINQK 200 (515)
T ss_dssp CBEEEEEETTSSHHHHHHHHHHTTT
T ss_pred CEEEEEcCCCCCccHHHHHHHHHhh
Confidence 478899999999999964 666654
No 415
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.22 E-value=0.099 Score=43.23 Aligned_cols=24 Identities=33% Similarity=0.245 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 356889999999999999999764
No 416
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=92.22 E-value=0.44 Score=46.37 Aligned_cols=39 Identities=23% Similarity=0.263 Sum_probs=28.5
Q ss_pred hhHHHHHhhhcc---CCCCeEEEEEEccCCCchhHHHHHHHh
Q 045345 121 SCWNTLRFLMDK---EPYGVRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 121 ~~l~~l~~~L~~---~~~~~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
..++.|...+.. .....++..|.|.+|.||||+....+.
T Consensus 142 ~~l~~l~~~~~~~~~~~~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 142 AKLRTLRRLLKDGEPHVSSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp HHHHHHHTTCBTTBCCCCCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhccccccccEEEEEcCCCCCHHHHHHHHhc
Confidence 345566665432 234578999999999999999988775
No 417
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.18 E-value=0.074 Score=50.81 Aligned_cols=23 Identities=35% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|+|||||.+.++.-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 48999999999999999999763
No 418
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.16 E-value=0.078 Score=44.23 Aligned_cols=23 Identities=22% Similarity=0.138 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45789999999999999998753
No 419
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.16 E-value=0.087 Score=44.21 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
...|+|.|.+|+|||||...+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 45788999999999999999985
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.15 E-value=0.066 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.6
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
..|+|+|.+|+|||||...+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 4678999999999999999875
No 421
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.13 E-value=0.079 Score=44.43 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=19.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999998764
No 422
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.12 E-value=0.076 Score=50.70 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
..+++|.|+.|.|||||.+.++.
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaG 59 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAG 59 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCChHHHHHHHHHc
Confidence 35899999999999999999976
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.079 Score=45.31 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998864
No 424
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.09 E-value=0.11 Score=43.83 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||||...+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 425
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.07 E-value=0.081 Score=44.49 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 456889999999999999999864
No 426
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.04 E-value=0.11 Score=43.65 Aligned_cols=23 Identities=26% Similarity=0.203 Sum_probs=20.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
--|+|.|.+|+|||||...+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46789999999999999998753
No 427
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=92.04 E-value=0.08 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.203 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456789999999999999999864
No 428
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.04 E-value=0.082 Score=44.27 Aligned_cols=24 Identities=21% Similarity=0.153 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 346889999999999999998764
No 429
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.03 E-value=0.083 Score=44.93 Aligned_cols=23 Identities=26% Similarity=0.173 Sum_probs=20.3
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46789999999999999998864
No 430
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.01 E-value=0.12 Score=50.28 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccCc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSHE 164 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 164 (445)
..+++|.|+.|.|||||.+.+...+...
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 4689999999999999999998876443
No 431
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.082 Score=45.68 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999998764
No 432
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=92.00 E-value=0.078 Score=45.40 Aligned_cols=24 Identities=25% Similarity=0.433 Sum_probs=20.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..-|+|+|.+|+|||+|...+.+.
T Consensus 20 ~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 20 KPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc
Confidence 346789999999999999877664
No 433
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.00 E-value=0.11 Score=44.75 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=21.4
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457889999999999999998764
No 434
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.96 E-value=0.085 Score=44.12 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||||...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 446789999999999999998764
No 435
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.95 E-value=0.064 Score=50.75 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.+++|.|+.|.|||||.+.++--
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 48999999999999999999863
No 436
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=91.94 E-value=0.23 Score=46.95 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=23.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
.+++|.|+.|+|||||.+.++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 58999999999999999999987654
No 437
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=91.93 E-value=0.084 Score=45.26 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
...|+|+|.+|+|||||...+..
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEEECCCCCCHHHHHHHHHh
Confidence 45788999999999999999853
No 438
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.92 E-value=0.055 Score=46.81 Aligned_cols=24 Identities=13% Similarity=0.190 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999887653
No 439
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=91.90 E-value=0.085 Score=45.33 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=21.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 457889999999999999999864
No 440
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=91.89 E-value=0.086 Score=45.00 Aligned_cols=24 Identities=13% Similarity=0.135 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999999875
No 441
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.86 E-value=0.089 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.8
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999998764
No 442
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.85 E-value=0.088 Score=44.88 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999999764
No 443
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.84 E-value=0.11 Score=46.22 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4567899999999999999999864
No 444
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=91.80 E-value=0.09 Score=44.62 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHHcC
Confidence 346789999999999999999864
No 445
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=91.80 E-value=0.13 Score=44.19 Aligned_cols=24 Identities=25% Similarity=0.411 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999998754
No 446
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.78 E-value=0.089 Score=45.65 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=20.5
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 456889999999999999999864
No 447
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=91.78 E-value=0.1 Score=48.28 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=21.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 468999999999999999999864
No 448
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=91.78 E-value=0.087 Score=46.01 Aligned_cols=23 Identities=30% Similarity=0.462 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
...|+|+|.+|+|||||...+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35688999999999999999874
No 449
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.77 E-value=0.088 Score=45.20 Aligned_cols=24 Identities=29% Similarity=0.205 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456889999999999999998764
No 450
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.75 E-value=0.092 Score=44.76 Aligned_cols=24 Identities=29% Similarity=0.292 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 451
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.72 E-value=0.061 Score=51.06 Aligned_cols=22 Identities=41% Similarity=0.668 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+++|.|+.|.|||||.+.++-
T Consensus 32 e~~~llGpnGsGKSTLLr~iaG 53 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAG 53 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 4899999999999999999976
No 452
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.71 E-value=0.094 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.171 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998764
No 453
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.71 E-value=0.09 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+++|.|+.|+|||||.+.++.-
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCChHHHHHHHHhCC
Confidence 358999999999999999999763
No 454
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=91.69 E-value=0.08 Score=49.07 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEEccCCCchhHHHHHHHh
Q 045345 139 MIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~ 159 (445)
-|+|+|.+|+|||||.+.++.
T Consensus 20 ~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 20 TLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 458999999999999999775
No 455
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=91.68 E-value=0.12 Score=49.51 Aligned_cols=38 Identities=16% Similarity=0.171 Sum_probs=27.9
Q ss_pred CCeEEEEEEc-cCCCchhHHHHHHHhhccCccccceeee
Q 045345 135 YGVRMIGICG-MGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 135 ~~~~vv~I~G-~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...++|+|+| -||+||||+|..++..+...-..++.++
T Consensus 141 ~~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 141 DKSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp TSCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 3478888875 8999999999999887654433455554
No 456
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.68 E-value=0.094 Score=44.59 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|+|.+|+|||||...+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 346789999999999999998864
No 457
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.59 E-value=0.11 Score=45.68 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=21.5
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467889999999999999999764
No 458
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.58 E-value=0.16 Score=42.60 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.6
Q ss_pred CeEEEEEEccCCCchhHHHHHHHh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
....|+|.|.+|+|||||...+..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346788999999999999988874
No 459
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=91.57 E-value=0.12 Score=45.22 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=24.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhccC
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
...|+|-|+.|+||||++..+.+.+..
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 358999999999999999999998765
No 460
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=91.57 E-value=0.08 Score=50.46 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=26.0
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..++|+|+.|.|||||++.+...+.. ..+.+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~-~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPF-DQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCT-TSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCC-CceEEEEC
Confidence 48999999999999999999876543 23444444
No 461
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.55 E-value=0.098 Score=44.84 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 457889999999999999998764
No 462
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.55 E-value=0.092 Score=44.20 Aligned_cols=24 Identities=25% Similarity=0.200 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 21 ~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 21 EHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999999864
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.55 E-value=0.099 Score=44.31 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999998753
No 464
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=91.53 E-value=0.14 Score=43.58 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.1
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999864
No 465
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=91.52 E-value=0.099 Score=45.84 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=19.1
Q ss_pred EEEEEccCCCchhHHHHHHHhh
Q 045345 139 MIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 139 vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-|+|+|.+|+|||+|...+...
T Consensus 15 KivlvGd~~VGKTsLi~r~~~~ 36 (216)
T 4dkx_A 15 KLVFLGEQSVGKTSLITRFMYD 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCcCHHHHHHHHHhC
Confidence 4679999999999999998753
No 466
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.51 E-value=0.088 Score=44.43 Aligned_cols=25 Identities=20% Similarity=0.203 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|.|.+|+|||||...+...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999864
No 467
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.48 E-value=0.094 Score=44.95 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346789999999999999998753
No 468
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.48 E-value=0.1 Score=44.22 Aligned_cols=25 Identities=24% Similarity=0.179 Sum_probs=21.3
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||...+...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3457889999999999999999853
No 469
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.46 E-value=0.094 Score=45.08 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=20.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|.|.+|+|||||...+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 456889999999999999998753
No 470
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=91.41 E-value=0.1 Score=44.21 Aligned_cols=23 Identities=35% Similarity=0.348 Sum_probs=20.4
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|+|.+|+|||||...+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999864
No 471
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=91.38 E-value=0.031 Score=54.46 Aligned_cols=26 Identities=12% Similarity=0.171 Sum_probs=21.9
Q ss_pred EEEEEEccCCCchhHHHHHHHhhccC
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLSSH 163 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 163 (445)
..++|.|.+|+|||+|+..+++....
T Consensus 152 Qr~~Ifgg~G~GKt~L~~~Ia~~~~~ 177 (465)
T 3vr4_D 152 QKLPVFSGSGLPHKELAAQIARQATV 177 (465)
T ss_dssp CBCCEEECTTSCHHHHHHHHHHHCBC
T ss_pred CEEEEeCCCCcChHHHHHHHHHHHHh
Confidence 35789999999999999999887543
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.37 E-value=0.13 Score=42.15 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.7
Q ss_pred EEEEEEccCCCchhHHHHHHHh
Q 045345 138 RMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.+.+|+|+.|.|||||..+++.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5889999999999999988865
No 473
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.35 E-value=0.15 Score=44.02 Aligned_cols=25 Identities=12% Similarity=0.069 Sum_probs=21.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhc
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
..+|+|+|++|+||+++|..+.+.+
T Consensus 11 ~~II~itGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 11 RLVLLFSGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCChHHHHHHHHHHc
Confidence 4699999999999999998887654
No 474
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.35 E-value=0.12 Score=47.04 Aligned_cols=24 Identities=25% Similarity=0.505 Sum_probs=21.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|.|.+|+|||||...+...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999999764
No 475
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.33 E-value=0.15 Score=43.49 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 346789999999999999999763
No 476
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.32 E-value=0.11 Score=44.83 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999998764
No 477
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.29 E-value=0.1 Score=44.60 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
.-.|+|.|.+|+|||||...+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 34688999999999999999865
No 478
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=91.27 E-value=0.091 Score=44.54 Aligned_cols=21 Identities=24% Similarity=0.197 Sum_probs=19.2
Q ss_pred EEEEccCCCchhHHHHHHHhh
Q 045345 140 IGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 140 v~I~G~gGiGKTtLA~~~~~~ 160 (445)
+.|+|.+|+|||++|.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS
T ss_pred EEEECCCCCcHHHHHHHHHhc
Confidence 679999999999999999865
No 479
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=91.26 E-value=0.21 Score=47.39 Aligned_cols=36 Identities=22% Similarity=0.247 Sum_probs=26.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhhcc--Cccccceeee
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDLSS--HEFEASSFLA 172 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~f~~~~~~~ 172 (445)
..++...|-||+||||+|..++..+. ..-..++.++
T Consensus 18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD 55 (354)
T 2woj_A 18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS 55 (354)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 45777789999999999999887766 4433445554
No 480
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.26 E-value=0.1 Score=45.48 Aligned_cols=24 Identities=38% Similarity=0.423 Sum_probs=20.2
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC-
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 446889999999999999998753
No 481
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=91.25 E-value=0.19 Score=46.50 Aligned_cols=38 Identities=16% Similarity=0.187 Sum_probs=27.8
Q ss_pred CCeEEEEEEcc-CCCchhHHHHHHHhhccCccccceeee
Q 045345 135 YGVRMIGICGM-GGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 135 ~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
...++|.|+|. ||+||||+|..++..+...-..++.++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 34678999986 899999999999887654333445554
No 482
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.20 E-value=0.11 Score=44.15 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=20.9
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|.|.+|+|||+|...+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346889999999999999999864
No 483
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=91.19 E-value=0.19 Score=45.66 Aligned_cols=51 Identities=18% Similarity=0.076 Sum_probs=33.0
Q ss_pred hHHHHHhhhcc--CCCCeEEEEEEcc-CCCchhHHHHHHHhhccCccccceeee
Q 045345 122 CWNTLRFLMDK--EPYGVRMIGICGM-GGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 122 ~l~~l~~~L~~--~~~~~~vv~I~G~-gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.++.|...|.. .....++|+|+|. ||+||||+|..++..+...-..++.++
T Consensus 65 a~r~lrt~l~~~~~~~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 65 KFRGIRSNIMFANPDSAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp HHHHHHHHHHHSSTTCCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHhhccCCCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34455444432 2234678989875 899999999998887654333455554
No 484
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.18 E-value=0.11 Score=49.19 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhhc
Q 045345 138 RMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
.+++|.|++|+|||||...+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 488999999999999999988644
No 485
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.17 E-value=0.11 Score=44.82 Aligned_cols=24 Identities=29% Similarity=0.304 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 346889999999999999998764
No 486
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=91.17 E-value=0.11 Score=44.91 Aligned_cols=24 Identities=21% Similarity=0.149 Sum_probs=20.6
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.--|+|.|.+|+|||||...+...
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998764
No 487
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=91.17 E-value=0.12 Score=47.98 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=22.0
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
..+.|+|+|.+|+|||||..++...
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTS
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCC
Confidence 4678999999999999999999764
No 488
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=91.13 E-value=0.13 Score=44.83 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYD 159 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~ 159 (445)
...|||+|..|+||||+++.+..
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~ 31 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA 31 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999998865
No 489
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=91.08 E-value=0.12 Score=44.54 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=20.8
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 456889999999999999998764
No 490
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.05 E-value=0.17 Score=49.12 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=25.2
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhh
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
++.+.-.+. .+...-++|+|+.|+|||||.+.++..
T Consensus 30 L~~vsl~i~--~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLVNKSVS--QGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHHHHSCC---CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCCceEec--CCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 555544343 222233999999999999999999764
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=91.01 E-value=0.12 Score=44.41 Aligned_cols=24 Identities=33% Similarity=0.317 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346889999999999999998864
No 492
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.99 E-value=0.12 Score=44.63 Aligned_cols=24 Identities=25% Similarity=0.311 Sum_probs=20.7
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356889999999999999998853
No 493
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=90.96 E-value=0.2 Score=47.01 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=27.1
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhhccCccccceeee
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
..+++...|-||+||||+|..++..+...-..+..++
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3467778999999999999999887655433344443
No 494
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=90.89 E-value=0.14 Score=47.54 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.2
Q ss_pred CeEEEEEEccCCCchhHHHHHHHhh
Q 045345 136 GVRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 136 ~~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
....|+|+|.+|+|||||..++...
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 4678999999999999999999864
No 495
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.85 E-value=0.18 Score=46.60 Aligned_cols=34 Identities=18% Similarity=0.365 Sum_probs=25.9
Q ss_pred HHHHHhhhccCCCCeEEEEEEccCCCchhHHHHHHHhhc
Q 045345 123 WNTLRFLMDKEPYGVRMIGICGMGGIGKTTLARVVYDLS 161 (445)
Q Consensus 123 l~~l~~~L~~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 161 (445)
++++...+. ..+++|.|++|+|||||.+.+....
T Consensus 160 v~~lf~~l~-----geiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 160 IEELKEYLK-----GKISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp HHHHHHHHS-----SSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred HHHHHHHhc-----CCeEEEECCCCCcHHHHHHHhcccc
Confidence 455555554 2488999999999999999987643
No 496
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.85 E-value=0.13 Score=44.88 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=20.1
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
--|+|+|.+|+|||||...+...
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45779999999999999998764
No 497
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.82 E-value=0.12 Score=44.06 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=20.0
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
.-.|+|+|.+|+|||||...+...
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 346789999999999999998753
No 498
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.81 E-value=0.074 Score=44.76 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=10.3
Q ss_pred eEEEEEEccCCCchhHHHHHHHhh
Q 045345 137 VRMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 137 ~~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
...|+|+|.+|+|||||...+...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEECCCCC------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999988753
No 499
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=90.79 E-value=0.11 Score=47.88 Aligned_cols=48 Identities=21% Similarity=0.264 Sum_probs=29.6
Q ss_pred hHHHHHhhhccCCCCeEEEEEEc---cCCCchhHHHHHHHhhccCccccceeee
Q 045345 122 CWNTLRFLMDKEPYGVRMIGICG---MGGIGKTTLARVVYDLSSHEFEASSFLA 172 (445)
Q Consensus 122 ~l~~l~~~L~~~~~~~~vv~I~G---~gGiGKTtLA~~~~~~~~~~f~~~~~~~ 172 (445)
.+.++.+.+.. ..++|+|++ -||+||||+|..++..+...-..++.++
T Consensus 22 ~~~~~~r~~~~---~~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD 72 (298)
T 2oze_A 22 ILEELRRILSN---KNEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID 72 (298)
T ss_dssp HHHHHHHHHHH---HCSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcC---CCcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence 34555555542 234666665 8999999999999876543322344443
No 500
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=90.76 E-value=0.09 Score=44.64 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.2
Q ss_pred EEEEEEccCCCchhHHHHHHHhh
Q 045345 138 RMIGICGMGGIGKTTLARVVYDL 160 (445)
Q Consensus 138 ~vv~I~G~gGiGKTtLA~~~~~~ 160 (445)
-.|+|.|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCG
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46789999999999999998764
Done!