BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045346
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D GWTP+H AAY+G+ +V +LL+ A A+ +T LHLAA RGH VE
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLK--NGADVNADDSLGVTPLHLAADRGHLEVVE 97
Query: 75 TILSLSPDCYELVDNKGWNFLHYA 98
+L D D+ G+ LH A
Sbjct: 98 VLLKNGADV-NANDHNGFTPLHLA 120
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 55/100 (55%), Gaps = 5/100 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D GWTP+H AA++G+ +V +LL ++ +++ KD +T LHLAA RGH V
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIV 96
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
E +L D D+ G+ LH A +E + LL+N
Sbjct: 97 EVLLKNGADV-NASDSHGFTPLHLAAKRGHLEIVEVLLKN 135
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+H AA G+ +V +LL+ A A+ T LHLAA RGH VE
Sbjct: 73 VNAKDSLGVTPLHLAARRGHLEIVEVLLK--NGADVNASDSHGFTPLHLAAKRGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKNGADV 139
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/101 (37%), Positives = 53/101 (52%), Gaps = 7/101 (6%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ TD G TP+H AA G +V +LL+ D +AS+ A +T LHLAA GH
Sbjct: 32 VNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAG----ITPLHLAAYDGHLEI 87
Query: 73 VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
VE +L D D GW LH A +S ++E + LL++
Sbjct: 88 VEVLLKHGADV-NAYDRAGWTPLHLAALSGQLEIVEVLLKH 127
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKM-TALHLAAGRGHARTV 73
+ +D G TP+H AAY G+ +V +LL + +++ DR T LHLAA G V
Sbjct: 65 VNASDSAGITPLHLAAYDGHLEIVEVLL---KHGADVNAYDRAGWTPLHLAALSGQLEIV 121
Query: 74 ETILSLSPDC 83
E +L D
Sbjct: 122 EVLLKHGADV 131
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D+ G+TP+H AA G+ +V +LL ++ +++ KD+ T LHLAA GH V
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
E +L D D G+ LH A +E + LL+ A + +N D TP
Sbjct: 85 EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 9/118 (7%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D+ G+TP+H AA G+ +V +LL ++ +++ KD+ T LHLAA GH V
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 84
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTP 131
E +L D D G+ LH A +E + LL+ A + +N D TP
Sbjct: 85 EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK----AGADVNAQDKFGKTP 137
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/116 (36%), Positives = 58/116 (50%), Gaps = 9/116 (7%)
Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
G TP+H AA G+ +V LLLE + +++ KD+ T LHLAA GH V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
D D G LH A + +E + LLE A + +N D TPLH+ A
Sbjct: 59 ADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE----AGADVNAKDKNGRTPLHLAA 109
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLA 64
KL+ E + D+ G TP+H AA G+ +V LLLE + +++ KD+ T LHLA
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLA 75
Query: 65 AGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
A GH V+ +L D D G LH A + +E + LLE
Sbjct: 76 ARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D+ G+TP+H AA G+ +V +LL ++ +++ KD+ T LHLAA GH V
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 96
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
E +L D D G+ LH A +E + LL+
Sbjct: 97 EVLLKAGADV-NAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D+ G+TP+H AA G+ +V +LL ++ +++ KD+ T LHLAA GH V
Sbjct: 73 VNAKDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIV 129
Query: 74 ETILSLSPDC 83
E +L D
Sbjct: 130 EVLLKAGADV 139
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D G TP+H AA++G+ +V +LL+ A A D +T LHLAA RGH VE +L
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLK--NGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 79 LSPDC 83
D
Sbjct: 135 YGADV 139
Score = 48.1 bits (113), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D GWTP+H AAY+G+ +V +LL+ A A T LHLAA GH VE
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLK--NGADVNAYDTLGSTPLHLAAHFGHLEIVE 97
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
+L D DN G LH A +E + LL+
Sbjct: 98 VLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLK 134
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 56/124 (45%), Gaps = 7/124 (5%)
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
AA G V +++ D D GW LH A +E + LL+N + +N
Sbjct: 21 AARAGRDDEVRILMANGADV-NAADVVGWTPLHLAAYWGHLEIVEVLLKNG----ADVNA 75
Query: 124 GDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS-YGYPKLKEEIQK 182
D + +TPLH+ A E V++ K A+ +A + ++ H+ + G+ ++ E + K
Sbjct: 76 YDTLGSTPLHLAAHFGHLEIVEVLL-KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 183 LSKD 186
D
Sbjct: 135 YGAD 138
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ TD G+TP+H AA G+ +V +LL+ D +AS++ +T LHLAA GH
Sbjct: 40 VNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTG----ITPLHLAAATGHLEI 95
Query: 73 VETILSLSPDCYELVDNKGWNFLHYA 98
VE +L D DN G LH A
Sbjct: 96 VEVLLKHGADV-NAYDNDGHTPLHLA 120
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D G TP+H AA G+ +V +LL+ A A + T LHLAA GH VE
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLK--HGADVNAYDNDGHTPLHLAAKYGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKHGADV 139
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 73/155 (47%), Gaps = 20/155 (12%)
Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP 81
G+TP+H AA YG + LLLE D + N A K+ +T LH+A + V+ +L
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERD-AHPNAAGKN-GLTPLHVAVHHNNLDIVKLLLPRGG 203
Query: 82 DCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMEN------TPLHVL 135
+ N G+ LH A +VE +ARSL+ G + TPLH+
Sbjct: 204 SPHSPAWN-GYTPLHIAAKQNQVE----------VARSLLQYGGSANAESVQGVTPLHLA 252
Query: 136 AAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFS 170
A E A+++ K QAN + NK ++ H+ +
Sbjct: 253 AQEGHAEMVALLLSK-QANGNLGNKSGLTPLHLVA 286
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 56/117 (47%), Gaps = 17/117 (14%)
Query: 23 WTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSL--- 79
TP+H AA G+ MV LLLE + + N+A T LH+AA GH VET+L+L
Sbjct: 81 QTPLHCAARIGHTNMVKLLLE-NNANPNLATT-AGHTPLHIAAREGH---VETVLALLEK 135
Query: 80 --SPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHV 134
S C + KG+ LH A +V LLE + + G TPLHV
Sbjct: 136 EASQAC---MTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGL----TPLHV 185
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
M+ T + G+TP+H A++YGN +V LL+ A A + LH AA +GH V
Sbjct: 303 MVDATTRMGYTPLHVASHYGNIKLVKFLLQ--HQADVNAKTKLGYSPLHQAAQQGHTDIV 360
Query: 74 ETIL 77
+L
Sbjct: 361 TLLL 364
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
G TP+H AA G+ MV LLL Q+ N+ NK +T LHL A GH + ++
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLS-KQANGNLGNKS-GLTPLHLVAQEGHVPVADVLI 298
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 70/157 (44%), Gaps = 11/157 (7%)
Query: 24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
TP+H A++ G+ +V LL+ S N++N + T LH+AA GH + +L
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGAS-PNVSNV-KVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF 143
+ LH A + LLENN + N +TPLH+ A R
Sbjct: 74 NAKAKDD-QTPLHCAARIGHTNMVKLLLENN----ANPNLATTAGHTPLHI--AAREGHV 126
Query: 144 HAVM-IKKTQANYDAVNKRNVSVRHIFS-YGYPKLKE 178
V+ + + +A+ + K+ + H+ + YG ++ E
Sbjct: 127 ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAE 163
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ TD G TP+H AA YG+ +V +LL+ D +A +I T LHLAA GH
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGS----TPLHLAALIGHLEI 95
Query: 73 VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
VE +L D VD G LH A + +E + LL++
Sbjct: 96 VEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 58 MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
+T LHLAA GH VE +L D +D G LH A + +E + LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNA-IDIXGSTPLHLAALIGHLEIVEVLLKHG--- 103
Query: 118 RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FSYGYPKL 176
+ +N D +TPLH+ A + E V++K A+ +A +K + I G L
Sbjct: 104 -ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 177 KEEIQKLS 184
E +QKL+
Sbjct: 162 AEILQKLN 169
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+H AA G+ +V +LL+ A A T LHLAA GH VE
Sbjct: 73 VNAIDIXGSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKHGADV 139
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 53/118 (44%), Gaps = 7/118 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D G TP+HYAA G+ +V LL I + A A T LH AA GH V+
Sbjct: 30 VNASDSDGRTPLHYAAKEGHKEIVKLL--ISKGADVNAKDSDGRTPLHYAAKEGHKEIVK 87
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
++S D D+ G LHYA E + L+ + +N D+ TPL
Sbjct: 88 LLISKGADV-NAKDSDGRTPLHYAAKEGHKEIVKLLISKG----ADVNTSDSDGRTPL 140
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
KL+ K + D G TP+HYAA G+ +V LL I + A A T LH AA
Sbjct: 54 KLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLL--ISKGADVNAKDSDGRTPLHYAA 111
Query: 66 GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
GH V+ ++S D D+ G L A E++ LLE
Sbjct: 112 KEGHKEIVKLLISKGADV-NTSDSDGRTPLDLAR-EHGNEEIVKLLE 156
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 65/155 (41%), Gaps = 11/155 (7%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA GN V L+E + + N ++ D + T LH AA GH V+ ++S D D
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGR-TPLHYAAKEGHKEIVKLLISKGADV-NAKD 67
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI 148
+ G LHYA E + L+ + +N D+ TPLH A KE H ++
Sbjct: 68 SDGRTPLHYAAKEGHKEIVKLLISKG----ADVNAKDSDGRTPLHYAA----KEGHKEIV 119
Query: 149 KKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL 183
K + VN + R EEI KL
Sbjct: 120 KLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKL 154
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 51/101 (50%), Gaps = 7/101 (6%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ TD G TP+H AA YG+ +V +LL+ D +A +I T LHLAA GH
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGS----TPLHLAALIGHLEI 95
Query: 73 VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
VE +L D VD G LH A + +E + LL++
Sbjct: 96 VEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 61/128 (47%), Gaps = 7/128 (5%)
Query: 58 MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
+T LHLAA GH VE +L D +D G LH A + +E + LL++
Sbjct: 48 LTPLHLAATYGHLEIVEVLLKHGADVNA-IDIMGSTPLHLAALIGHLEIVEVLLKHG--- 103
Query: 118 RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FSYGYPKL 176
+ +N D +TPLH+ A + E V++K A+ +A +K + I G L
Sbjct: 104 -ADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 177 KEEIQKLS 184
E +QKL+
Sbjct: 162 AEILQKLN 169
Score = 35.4 bits (80), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+H AA G+ +V +LL+ A A T LHLAA GH VE
Sbjct: 73 VNAIDIMGSTPLHLAALIGHLEIVEVLLK--HGADVNAVDTWGDTPLHLAAIMGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKHGADV 139
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D+ GWTP+H AAY G+ +V +LL+ + A + T LHLAA GH VE
Sbjct: 73 VNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVN--AMDYQGYTPLHLAAEDGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKYGADV 139
Score = 37.7 bits (86), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 56/128 (43%), Gaps = 7/128 (5%)
Query: 58 MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLA 117
+T LHL GH +E +L + D D GW LH A +E + LL+
Sbjct: 48 ITPLHLVVNNGHLEIIEVLLKYAADV-NASDKSGWTPLHLAAYRGHLEIVEVLLKYG--- 103
Query: 118 RSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FSYGYPKL 176
+ +N D TPLH+ A E V++K A+ +A +K + I G L
Sbjct: 104 -ADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG-ADVNAQDKFGKTAFDISIDNGNEDL 161
Query: 177 KEEIQKLS 184
E +QKL+
Sbjct: 162 AEILQKLN 169
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 42/88 (47%), Gaps = 3/88 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
+D G TP+HYAA G+ +V LLL + A A T LH AA GH V+ +L
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLS--KGADPNAKDSDGRTPLHYAAENGHKEIVKLLL 90
Query: 78 SLSPDCYELVDNKGWNFLHYAMVSFRVE 105
S D D+ G LHYA + E
Sbjct: 91 SKGADPN-AKDSDGRTPLHYAAENGHKE 117
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 43/94 (45%), Gaps = 4/94 (4%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D G TP+HYAA G+ +V LLL + A A T LH AA GH V+ +LS
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLLS--KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLS 124
Query: 79 LSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
D D+ G L A E++ LLE
Sbjct: 125 KGADPN-TSDSDGRTPLDLAR-EHGNEEIVKLLE 156
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA GN V LLE + + N ++ D + T LH AA GH V+ +LS D D
Sbjct: 11 AAENGNKDRVKDLLE-NGADPNASDSDGR-TPLHYAAENGHKEIVKLLLSKGADPN-AKD 67
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAAVRPKEFHAV 146
+ G LHYA + E + LL +P A+ D+ TPLH A KE +
Sbjct: 68 SDGRTPLHYAAENGHKEIVKLLLSKGADPNAK------DSDGRTPLHYAAENGHKEIVKL 121
Query: 147 MIKK 150
++ K
Sbjct: 122 LLSK 125
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
TD G +P+H AA YG++ +LL S DR T LH+AA GHA VE +L
Sbjct: 30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDR--TPLHMAASEGHANIVEVLL 87
Query: 78 SLSPD 82
D
Sbjct: 88 KHGAD 92
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTVETILSLSPD 82
TP+H AA G+ +V +LL + +++ KD KMTALH A H VE ++ D
Sbjct: 69 TPLHMAASEGHANIVEVLL---KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGAD 125
Query: 83 CY 84
+
Sbjct: 126 VH 127
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 5/100 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D GWTP+H AA+ G+ +V +LL ++ +++ D MT L LAA GH V
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIV 96
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
E +L D D +G LH A + +E + LL+N
Sbjct: 97 EVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+ AA +G+ +V +LL+ A AN T LHLAA GH VE
Sbjct: 73 VNAVDHAGMTPLRLAALFGHLEIVEVLLK--NGADVNANDMEGHTPLHLAAMFGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKNGADV 139
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 7/127 (5%)
Query: 59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLAR 118
T LHLAA GH VE +L D VD+ G L A + +E + LL+N
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNG---- 103
Query: 119 SLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FSYGYPKLK 177
+ +N D +TPLH+ A E V++ K A+ +A +K + I G L
Sbjct: 104 ADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKFGKTAFDISIDNGNEDLA 162
Query: 178 EEIQKLS 184
E +QKL+
Sbjct: 163 EILQKLN 169
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D G TP+H AA G+ +V LLL Q A A T LHLAA GH V+
Sbjct: 30 VNASDSDGKTPLHLAAENGHKEVVKLLLS--QGADPNAKDSDGKTPLHLAAENGHKEVVK 87
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVE 105
+LS D D+ G LH A + E
Sbjct: 88 LLLSQGADPN-AKDSDGKTPLHLAAENGHKE 117
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA GN V LLE + + N ++ D K T LHLAA GH V+ +LS D D
Sbjct: 11 AAENGNKDRVKDLLE-NGADVNASDSDGK-TPLHLAAENGHKEVVKLLLSQGADPN-AKD 67
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLINEGDAMENTPLHVLAAVRPKEF 143
+ G LH A + E + LL +P A+ D+ TPLH+ A KE
Sbjct: 68 SDGKTPLHLAAENGHKEVVKLLLSQGADPNAK------DSDGKTPLHLAAENGHKEV 118
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D +G+TP+H AAY+G+ +V +LL+ A A MT LHLAA G+ VE
Sbjct: 73 VDASDVFGYTPLHLAAYWGHLEIVEVLLK--NGADVNAMDSDGMTPLHLAAKWGYLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKHGADV 139
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 43/86 (50%), Gaps = 7/86 (8%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ D G TP+H AAY G+ +V +LL+ D AS++ T LHLAA GH
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFG----YTPLHLAAYWGHLEI 95
Query: 73 VETILSLSPDCYELVDNKGWNFLHYA 98
VE +L D + D+ G LH A
Sbjct: 96 VEVLLKNGADVNAM-DSDGMTPLHLA 120
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D GWTP+H AA G+ +V +LL+ A A +T LHLAA RGH VE
Sbjct: 73 VNARDTDGWTPLHLAADNGHLEIVEVLLKY--GADVNAQDAYGLTPLHLAADRGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKHGADV 139
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A+ D+ T LHLAA GH VE +L D D GW LH A + +E + LL
Sbjct: 42 AHDDQGSTPLHLAAWIGHPEIVEVLLKHGADV-NARDTDGWTPLHLAADNGHLEIVEVLL 100
Query: 112 ENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FS 170
+ + +N DA TPLH+ A E V++K A+ +A +K + I
Sbjct: 101 KYG----ADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG-ADVNAQDKFGKTAFDISID 155
Query: 171 YGYPKLKEEIQKLS 184
G L E +QKL+
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+H AA+ G+ +V +LL+ A A T LHLAA GH VE
Sbjct: 40 VNAHDDQGSTPLHLAAWIGHPEIVEVLLK--HGADVNARDTDGWTPLHLAADNGHLEIVE 97
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
+L D D G LH A +E + LL++
Sbjct: 98 VLLKYGADV-NAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD-RKMTALHLAAGRGHARTV 73
+ D YG TP+H AA G+ +V +LL ++ +++ D T LHLAA RGH V
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIV 96
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
E +L D D G LH A + +E + LL+
Sbjct: 97 EVLLKYGADV-NADDTIGSTPLHLAADTGHLEIVEVLLK 134
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D G TP+H AA G+ +V +LL+ A A+ T LHLAA GH VE +L
Sbjct: 77 DFSGSTPLHLAAKRGHLEIVEVLLKY--GADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 79 LSPDC 83
D
Sbjct: 135 YGADV 139
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGH 69
K + +Q G TP+HYAA + + +LLE +N KD + TA+H AA +G+
Sbjct: 96 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHYEATAMHRAAAKGN 152
Query: 70 ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-- 127
+ + +L + D +G LH A RVE+ A+ L+++G ++
Sbjct: 153 LKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEE----------AKLLVSQGASIYI 201
Query: 128 ----ENTPLHV 134
E TPL V
Sbjct: 202 ENKEEKTPLQV 212
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + K + TDQ T +H+A G+ +V LL++ ++ D + LH+
Sbjct: 23 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 80
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
AA G V+ +L V+ G LHYA R E LLE NP A+
Sbjct: 81 AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 136
Query: 122 NEGDAMENTPLHVLAA 137
D E T +H AA
Sbjct: 137 ---DHYEATAMHRAAA 149
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.1 bits (105), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 61/131 (46%), Gaps = 21/131 (16%)
Query: 11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGH 69
K + +Q G TP+HYAA + + +LLE +N KD + TA+H AA +G+
Sbjct: 95 KGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE---GGANPDAKDHYEATAMHRAAAKGN 151
Query: 70 ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-- 127
+ + +L + D +G LH A RVE+ A+ L+++G ++
Sbjct: 152 LKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEE----------AKLLVSQGASIYI 200
Query: 128 ----ENTPLHV 134
E TPL V
Sbjct: 201 ENKEEKTPLQV 211
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + K + TDQ T +H+A G+ +V LL++ ++ D + LH+
Sbjct: 22 LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 79
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
AA G V+ +L V+ G LHYA R E LLE NP A+
Sbjct: 80 AASAGRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 135
Query: 122 NEGDAMENTPLHVLAA 137
D E T +H AA
Sbjct: 136 ---DHYEATAMHRAAA 148
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
A+R ++ + + + D +G++P+H+A G +V +L+ + + N+ N+ T LH
Sbjct: 20 AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLH 77
Query: 63 LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
LAA GH V+ +L D V+ G LHYA + + +L+ N L
Sbjct: 78 LAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 130
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 3 ALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALH 62
A+R ++ + + + D +G++P+H+A G +V +L+ + + N+ N+ T LH
Sbjct: 15 AVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MRGARINVMNRGDD-TPLH 72
Query: 63 LAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
LAA GH V+ +L D V+ G LHYA + + +L+ N L
Sbjct: 73 LAASHGHRDIVQKLLQYKAD-INAVNEHGNVPLHYACFWGQDQVAEDLVANGAL 125
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10 EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
E++ +I TD+ G+TP+ +AA +G +V LL+ + + + K R+ +AL LA +G+
Sbjct: 22 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 79
Query: 70 ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
V+ +L D E N G L YA+ V+ + LLE+
Sbjct: 80 TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 122
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10 EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
E++ +I TD+ G+TP+ +AA +G +V LL+ + + + K R+ +AL LA +G+
Sbjct: 24 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 81
Query: 70 ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
V+ +L D E N G L YA+ V+ + LLE+
Sbjct: 82 TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 124
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 3/104 (2%)
Query: 10 EKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGH 69
E++ +I TD+ G+TP+ +AA +G +V LL+ + + + K R+ +AL LA +G+
Sbjct: 40 EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ-NGADPQLLGKGRE-SALSLACSKGY 97
Query: 70 ARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
V+ +L D E N G L YA+ V+ + LLE+
Sbjct: 98 TDIVKMLLDCGVDVNEYDWNGGTPLL-YAVHGNHVKCVKMLLES 140
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 44.3 bits (103), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 47/92 (51%), Gaps = 5/92 (5%)
Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTVETILSLS 80
G TP+H AA G+ +V LLLE + +++ KD+ T LHLAA GH V+ +L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 81 PDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
D D G LH A + +E + LLE
Sbjct: 59 ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLA 64
KL+ E + D+ G TP+H AA G+ +V LLLE + +++ KD+ T LHLA
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE---AGADVNAKDKNGRTPLHLA 75
Query: 65 AGRGHARTVETIL 77
A GH V+ +L
Sbjct: 76 ARNGHLEVVKLLL 88
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
KL+ E + D+ G TP+H AA G+ +V LLLE
Sbjct: 52 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G TP+H AA YG+ +V +LL+ A A T LHLAA GH VE
Sbjct: 73 VNAADKMGDTPLHLAALYGHLEIVEVLLK--NGADVNATDTYGFTPLHLAADAGHLEIVE 130
Query: 75 TILSLSPDC 83
+L D
Sbjct: 131 VLLKYGADV 139
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 60/134 (44%), Gaps = 7/134 (5%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A D T LHLAA +GH VE +L D D G LH A + +E + LL
Sbjct: 42 AEDDSGKTPLHLAAIKGHLEIVEVLLKHGADV-NAADKMGDTPLHLAALYGHLEIVEVLL 100
Query: 112 ENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMIKKTQANYDAVNKRNVSVRHI-FS 170
+N + +N D TPLH+ A E V++ K A+ +A +K + I
Sbjct: 101 KNG----ADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKFGKTAFDISID 155
Query: 171 YGYPKLKEEIQKLS 184
G L E +QKL+
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D G TP+H AA G+ +V +LL + +++ D+ T LHLAA GH V
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIV 96
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
E +L D D G+ LH A + +E + LL+
Sbjct: 97 EVLLKNGADV-NATDTYGFTPLHLAADAGHLEIVEVLLK 134
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 7/118 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ +D G TP+H+AA G+ +V LL I + A A T LH AA GH V+
Sbjct: 30 VNASDSDGRTPLHHAAENGHKEVVKLL--ISKGADVNAKDSDGRTPLHHAAENGHKEVVK 87
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPL 132
++S D D+ G LH+A + E + L+ + +N D+ TPL
Sbjct: 88 LLISKGADVN-AKDSDGRTPLHHAAENGHKEVVKLLISKG----ADVNTSDSDGRTPL 140
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 4/107 (3%)
Query: 6 KLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAA 65
KL+ K + D G TP+H+AA G+ +V LL I + A A T LH AA
Sbjct: 54 KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLL--ISKGADVNAKDSDGRTPLHHAA 111
Query: 66 GRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
GH V+ ++S D D+ G L A E++ LLE
Sbjct: 112 ENGHKEVVKLLISKGADVN-TSDSDGRTPLDLAR-EHGNEEVVKLLE 156
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 7/122 (5%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA GN V L+E + + N ++ D + T LH AA GH V+ ++S D D
Sbjct: 11 AAENGNKDRVKDLIE-NGADVNASDSDGR-TPLHHAAENGHKEVVKLLISKGADVN-AKD 67
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVMI 148
+ G LH+A + E + L+ + +N D+ TPLH A KE ++I
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKG----ADVNAKDSDGRTPLHHAAENGHKEVVKLLI 123
Query: 149 KK 150
K
Sbjct: 124 SK 125
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D+ G TP+H AA G+ +V +LL+ A A + +T LHLAA RGH VE +L
Sbjct: 44 DEDGLTPLHLAAQLGHLEIVEVLLKY--GADVNAEDNFGITPLHLAAIRGHLEIVEVLLK 101
Query: 79 LSPDC 83
D
Sbjct: 102 HGADV 106
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ D YG+TP+H AA G+ +V +LL+ D +A ++ T LHLAA GH
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGS----TPLHLAADEGHLEI 128
Query: 73 VETILSLSPDC 83
VE +L D
Sbjct: 129 VEVLLKYGADV 139
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ D G TP+H AA G+ +V +LL+ D A+++ T LHLAA GH
Sbjct: 40 VNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADV----YGFTPLHLAAMTGHLEI 95
Query: 73 VETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
VE +L D D G LH A +E + LL+
Sbjct: 96 VEVLLKYGADVNAF-DMTGSTPLHLAADEGHLEIVEVLLK 134
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 87 VDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAV 146
VDN G LH A VS +E + LL++ + ++ D TPLH+ A E V
Sbjct: 43 VDNTGLTPLHLAAVSGHLEIVEVLLKHG----ADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Query: 147 MIK 149
++K
Sbjct: 99 LLK 101
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ TD G TP+H AA G+ +V +LL+ + A + T LHLAA GH VE
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN--AWDNYGATPLHLAADNGHLEIVE 97
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLE 112
+L D D +G+ LH A +E + LL+
Sbjct: 98 VLLKHGADV-NAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKD-RKMTALHLAAGRGHARTVETIL 77
D YG TP+H AA G+ +V +LL + +++ KD T LHLAA GH VE +L
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLL---KHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLL 133
Query: 78 SLSPDC 83
D
Sbjct: 134 KYGADV 139
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat
Protein
Length = 154
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D YG TP+H AA G+ +V +LL A A T LHLAA GH VE +L
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLR--NGADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Query: 79 LSPDC 83
D
Sbjct: 90 YGADV 94
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK-MTALHLAAGRGHARTV 73
+ D G TP+H AA G+ +V +LL + +++ KD +T L+LAA GH V
Sbjct: 61 VNAVDTNGTTPLHLAASLGHLEIVEVLL---KYGADVNAKDATGITPLYLAAYWGHLEIV 117
Query: 74 ETILSLSPDC 83
E +L D
Sbjct: 118 EVLLKHGADV 127
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ D G TP+H AA G+ +V +LL+ D +AS+I + T LHLAA GH
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGR----TPLHLAATVGHLEI 95
Query: 73 VETILSLSPDC 83
VE +L D
Sbjct: 96 VEVLLEYGADV 106
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A D +T LHLAA RGH VE +L D D G LH A +E + LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDIWGRTPLHLAATVGHLEIVEVLL 100
Query: 112 E 112
E
Sbjct: 101 E 101
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + K + TDQ T +H+A G+ +V LL++ ++ D + LH+
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 79
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
AA G V+ +L V+ G LHYA R E LLE NP A+
Sbjct: 80 AASAGRDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 135
Query: 122 NEGDAMENTPLHVLAA 137
D + T +H AA
Sbjct: 136 ---DHYDATAMHRAAA 148
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 48/157 (30%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLL-------EIDQSASNI---------------- 51
+ + D GW+P+H AA G +V LL ++Q+
Sbjct: 66 VNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 52 ----ANKDRK----MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR 103
AN D K TA+H AA +G+ + V IL + D +G LH A R
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVH-ILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 104 VEQLTNLLENNPLARSLINEGDAM------ENTPLHV 134
VE+ A+ L+ +G ++ E TPL V
Sbjct: 185 VEE----------AKFLVTQGASIYIENKEEKTPLQV 211
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 59/136 (43%), Gaps = 11/136 (8%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + K + TDQ T +H+A G+ +V LL++ ++ D + LH+
Sbjct: 22 LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND--KDDAGWSPLHI 79
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN--NPLARSLI 121
AA G V+ +L V+ G LHYA R E LLE NP A+
Sbjct: 80 AASAGXDEIVKALLVKGAH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAK--- 135
Query: 122 NEGDAMENTPLHVLAA 137
D + T +H AA
Sbjct: 136 ---DHYDATAMHRAAA 148
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 41/157 (26%), Positives = 61/157 (38%), Gaps = 48/157 (30%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLL-------EIDQSASNI---------------- 51
+ + D GW+P+H AA G +V LL ++Q+
Sbjct: 66 VNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125
Query: 52 ----ANKDRK----MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFR 103
AN D K TA+H AA +G+ + V IL + D +G LH A R
Sbjct: 126 LEGGANPDAKDHYDATAMHRAAAKGNLKMVH-ILLFYKASTNIQDTEGNTPLHLACDEER 184
Query: 104 VEQLTNLLENNPLARSLINEGDAM------ENTPLHV 134
VE+ A+ L+ +G ++ E TPL V
Sbjct: 185 VEE----------AKFLVTQGASIYIENKEEKTPLQV 211
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 1 DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--M 58
+ AL +L+E++ + D+ G T + + A G+ V LL E + +++ ++D + +
Sbjct: 57 EQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGL 111
Query: 59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
TALH+AAG VE ++ L D E+ D +G L A E L + NP+
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAR-----EILKTTPKGNPM 163
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G TP+H AA Y + +V +LL+ A A+ + T LHLAA GH VE
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLK--HGADVNAHDNDGSTPLHLAALFGHLEIVE 97
Query: 75 TILSLSPDC 83
+L D
Sbjct: 98 VLLKHGADV 106
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE--IDQSASNIANKDRKMTALHLAAGRGHART 72
+ D G TP+H AA G+ +V +LL+ D +A +I + T LHLAA GH
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGR----TPLHLAATVGHLEI 95
Query: 73 VETILSLSPDC 83
VE +L D
Sbjct: 96 VEVLLEYGADV 106
Score = 31.2 bits (69), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A D +T LHLAA RGH VE +L D D G LH A +E + LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR-DIWGRTPLHLAATVGHLEIVEVLL 100
Query: 112 E 112
E
Sbjct: 101 E 101
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 11/118 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETIL 77
T Q G +P+H AA +G ++ LLL+ A+ A + LHLA +GH + V+ +L
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLLK--HGANAGARNADQAVPLHLACQQGHFQVVKCLL 139
Query: 78 --SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
+ P+ +L G L YA E + LL++ + IN + NT LH
Sbjct: 140 DSNAKPNKKDL---SGNTPLIYACSGGHHELVALLLQHG----ASINASNNKGNTALH 190
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 59/118 (50%), Gaps = 13/118 (11%)
Query: 1 DAALRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRK--M 58
+ AL +L+E++ + D+ G T + + A G+ V LL E + +++ ++D + +
Sbjct: 58 EQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAE---AGADLDHRDMRGGL 112
Query: 59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPL 116
TALH+AAG VE ++ L D E+ D +G L A E L + NP+
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAR-----EILKTTPKGNPM 164
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/145 (25%), Positives = 71/145 (48%), Gaps = 13/145 (8%)
Query: 24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
TP+ A G++ VNLLL Q +++ + + +H AA RGH V ++++ +
Sbjct: 71 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 127
Query: 84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF 143
+ + G L+ A + + + LLE+ + +N+G +++PLH +A +E
Sbjct: 128 DHKISHLG-TPLYLACENQQRACVKKLLESG----ADVNQGKG-QDSPLHAVARTASEEL 181
Query: 144 HAVMIK---KTQANYDAVNKRNVSV 165
+++ TQA +A KR V +
Sbjct: 182 ACLLMDFGADTQAK-NAEGKRPVEL 205
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D +G TP+H AA G+ +V +LL+ + N R T LHLAA H VE
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGR--TPLHLAAWADHLEIVE 97
Query: 75 TILSLSPDC 83
+L D
Sbjct: 98 VLLKHGADV 106
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D G TP+H AA G+ +V +LL+ A A+ T LHLAA GH VE
Sbjct: 40 VNAMDDAGVTPLHLAAKRGHLEIVEVLLK--HGADVNASDSWGRTPLHLAATVGHLEIVE 97
Query: 75 TILSLSPDC 83
+L D
Sbjct: 98 VLLEYGADV 106
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A D +T LHLAA RGH VE +L D D+ G LH A +E + LL
Sbjct: 42 AMDDAGVTPLHLAAKRGHLEIVEVLLKHGADV-NASDSWGRTPLHLAATVGHLEIVEVLL 100
Query: 112 E 112
E
Sbjct: 101 E 101
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILS 78
D GWTP+H A +G+ +V LLL+ + ++ + LH AA GH V+ +LS
Sbjct: 40 DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND--SPLHDAAKNGHVDIVKLLLS 97
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 9/99 (9%)
Query: 18 TDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTVETI 76
+D TP+H AA Y +V LLL Q +++ KD+ + LH A GH E +
Sbjct: 54 SDGRKSTPLHLAAGYNRVRIVQLLL---QHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 77 LSLSPDCYELVDNKGWNF--LHYAMVSFRVEQLTNLLEN 113
L C +D W F LH A RVE + LL +
Sbjct: 111 LKHGA-CVNAMDL--WQFTPLHEAASKNRVEVCSLLLSH 146
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 52 ANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
A+ RK T LHLAAG R V+ +L D + D G LH A S+ ++T LL
Sbjct: 53 ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNA-CSYGHYEVTELL 110
Query: 112 ENNPLARSLINEGDAMENTPLHVLAA 137
+ + +N D + TPLH A+
Sbjct: 111 LKH---GACVNAMDLWQFTPLHEAAS 133
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G P+H A YG+Y + LLL+ A A + T LH AA +
Sbjct: 84 VHAKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMDLWQFTPLHEAASKNRVEVCS 141
Query: 75 TILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLT 108
+LS D LV+ G + + A E+LT
Sbjct: 142 LLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLT 174
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
TP+ A G++ VNLLL Q +++ + + +H AA RGH V ++++ +
Sbjct: 127 TPLFNACVSGSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLIAYGGNI 183
Query: 84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEF 143
+ + G L+ A + + + LLE+ + +N+G +++PLH + +E
Sbjct: 184 DHKISHLG-TPLYLACENQQRACVKKLLESG----ADVNQGKG-QDSPLHAVVRTASEEL 237
Query: 144 HAVMIK---KTQANYDAVNKRNVSV 165
+++ TQA +A KR V +
Sbjct: 238 ACLLMDFGADTQAK-NAEGKRPVEL 261
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK--DRKMTALHLAAGRGHARTVETI 76
D GWTP H A GN +V L D+ NK ++ +T LHLA G+ V
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQF 125
Query: 77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
L + + D LH A S +L LL L +S +N D TPL
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHAL 182
Query: 137 AVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL 183
A + ++++K A YD V+ + + L E+++K
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV------ALNEQVKKF 223
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK--DRKMTALHLAAGRGHARTVETI 76
D GWTP H A GN +V L D+ NK ++ +T LHLA G+ V
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQF 125
Query: 77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
L + + D LH A S +L LL L +S +N D TPL
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHAL 182
Query: 137 AVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL 183
A + ++++K A YD V+ + + L E+++K
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV------ALNEQVKKF 223
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/167 (27%), Positives = 68/167 (40%), Gaps = 14/167 (8%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANK--DRKMTALHLAAGRGHARTVETI 76
D GWTP H A GN +V L D+ NK ++ +T LHLA G+ V
Sbjct: 69 DDSGWTPFHIACSVGNLEVVKSL--YDRPLKPDLNKITNQGVTCLHLAVGKKWFE-VSQF 125
Query: 77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLA 136
L + + D LH A S +L LL L +S +N D TPL
Sbjct: 126 LIENGASVRIKDKFNQIPLHRA-ASVGSLKLIELLCG--LGKSAVNWQDKQGWTPLFHAL 182
Query: 137 AVRPKEFHAVMIKKTQANYDAVNKRNVSVRHIFSYGYPKLKEEIQKL 183
A + ++++K A YD V+ + + L E+++K
Sbjct: 183 AEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV------ALNEQVKKF 223
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D+YG TP++ A +G+ +V +LL ++ +++ D T LHLAA GH
Sbjct: 40 VNAKDEYGLTPLYLATAHGHLEIVEVLL---KNGADVNAVDAIGFTPLHLAAFIGHLEIA 96
Query: 74 ETILSLSPDC 83
E +L D
Sbjct: 97 EVLLKHGADV 106
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D G+TP+H AA+ G+ + +LL + +++ +D+ TA ++ G G+
Sbjct: 73 VNAVDAIGFTPLHLAAFIGHLEIAEVLL---KHGADVNAQDKFGKTAFDISIGNGNEDLA 129
Query: 74 ETILSLS 80
E + L+
Sbjct: 130 EILQKLN 136
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 35.4 bits (80), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLL------LEIDQSASNIANKDRK 57
L KL K + E D YG+T AA YG + L + + + + RK
Sbjct: 87 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 146
Query: 58 --MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS---FRVEQLTNLL 111
TAL AA +GH ++ +L DN G N L +A++S VE +T+LL
Sbjct: 147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI 76
+ ++ GWTP+H A +V LLL A + K T LAA G + ++
Sbjct: 34 QEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91
Query: 77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQL 107
LS D E D G+ A V +V+ L
Sbjct: 92 LSKGADVNE-CDFYGFTAFMEAAVYGKVKAL 121
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
D+ G+ IH AA G + LLE Q+ NI + + + LHLAA GH R VE
Sbjct: 67 DRTGFAVIHDAARAGQLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.7 bits (78), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 52/119 (43%), Gaps = 11/119 (9%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLL------LEIDQSASNIANKDRK 57
L KL K + E D YG+T AA YG + L + + + + RK
Sbjct: 107 LLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK 166
Query: 58 --MTALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVS---FRVEQLTNLL 111
TAL AA +GH ++ +L DN G N L +A++S VE +T+LL
Sbjct: 167 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL 225
Score = 32.3 bits (72), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
Query: 17 ETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETI 76
+ ++ GWTP+H A +V LLL A + K T LAA G + ++
Sbjct: 54 QEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFILAAIAGSVKLLKLF 111
Query: 77 LSLSPDCYELVDNKGWNFLHYAMVSFRVEQL 107
LS D E D G+ A V +V+ L
Sbjct: 112 LSKGADVNE-CDFYGFTAFMEAAVYGKVKAL 141
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + + ++ + D+ G+TP+ +A+ +G V LLE + +I K+R+ +AL L
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSL 75
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
A+ G+ V +L D + D G L YA+ V+ + LL L E
Sbjct: 76 ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLAR---GADLTTE 131
Query: 124 GDAMENTPLHVLAAVRPKEFHAVM 147
D+ TP+ + A+ ++ V+
Sbjct: 132 ADSG-YTPMDLAVALGYRKVQQVI 154
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
D+ G+ IH AA G + LLE +Q+ NI + + + LHLAA GH R VE
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 33.5 bits (75), Expect = 0.17, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 22 GWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSP 81
G TP+H AA G+ V LL + N +KD T LHLAA GHA V+ +L+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGN-TPLHLAAKNGHAEIVKLLLAKGA 66
Query: 82 D 82
D
Sbjct: 67 D 67
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
D+ G+ IH AA G + LLE Q+ NI + + + LHLAA GH R VE
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 69/144 (47%), Gaps = 7/144 (4%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHL 63
L++ + + ++ + D+ G+TP+ +A+ +G V LLE + +I K+R+ +AL L
Sbjct: 18 LKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERE-SALSL 75
Query: 64 AAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINE 123
A+ G+ V +L D + D G L YA+ V+ + LL L E
Sbjct: 76 ASTGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVHGNHVKCVEALLAR---GADLTTE 131
Query: 124 GDAMENTPLHVLAAVRPKEFHAVM 147
D+ TP+ + A+ ++ V+
Sbjct: 132 ADSG-YTPMDLAVALGYRKVQQVI 154
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
D+ G+ IH AA G + LLE Q+ NI + + + LHLAA GH R VE
Sbjct: 67 DRTGFAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.1 bits (74), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D+ G TP+H AA + +V +LL ++ +++ D T LHL A GH V
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLL---KNGADVNAIDAIGETPLHLVAMYGHLEIV 96
Query: 74 ETILSLSPDC 83
E +L D
Sbjct: 97 EVLLKHGADV 106
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 48/98 (48%), Gaps = 6/98 (6%)
Query: 88 DNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAAVRPKEFHAVM 147
D G LH A ++ +E + LL+N + +N DA+ TPLH++A E V+
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNG----ADVNAIDAIGETPLHLVAMYGHLEIVEVL 99
Query: 148 IKKTQANYDAVNKRNVSVRHI-FSYGYPKLKEEIQKLS 184
+K A+ +A +K + I G L E +QKL+
Sbjct: 100 LKHG-ADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 136
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 33.1 bits (74), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 8/142 (5%)
Query: 24 TPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDC 83
TP+H+A G+ MV L++ S I + + +HLAA GH V +++ D
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGE--GCSCIHLAAQFGHTSIVAYLIAKGQDV 135
Query: 84 YELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAM-ENTPLHVLAAVRPKE 142
+++D G L +A T LL ++ +N GD +NT LH A +
Sbjct: 136 -DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVS---VNLGDKYHKNTALH-WAVLAGNT 190
Query: 143 FHAVMIKKTQANYDAVNKRNVS 164
++ + AN DA N + S
Sbjct: 191 TVISLLLEAGANVDAQNIKGES 212
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 32/67 (47%)
Query: 11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHA 70
K + + DQ G TP+ +AAY + LL + N+ +K K TALH A G+
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNT 190
Query: 71 RTVETIL 77
+ +L
Sbjct: 191 TVISLLL 197
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 8/135 (5%)
Query: 14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTV 73
++ D G T +H AA G+Y +V LL Q N + D T + A H V
Sbjct: 69 LVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQD-DGGWTPMIWATEYKHVDLV 127
Query: 74 ETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLH 133
+ +LS D + DN+ LH+A S V+ LL ++ GD +PLH
Sbjct: 128 KLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGD----SPLH 182
Query: 134 VLAAVRPKEFHAVMI 148
+ A R + V++
Sbjct: 183 I--AARENRYDCVVL 195
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 59/134 (44%), Gaps = 10/134 (7%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMT-ALHLAAGRGHARTVETIL 77
D GWTP+ +A Y + +V LLL S+I +D + LH AA G E +L
Sbjct: 108 DDGGWTPMIWATEYKHVDLVKLLL---SKGSDINIRDNEENICLHWAAFSGCVDIAEILL 164
Query: 78 SLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
+ D + V+ G + LH A R + + L + EG+ TPL A+
Sbjct: 165 AAKCDLHA-VNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGE----TPLQC-AS 218
Query: 138 VRPKEFHAVMIKKT 151
+ + + A+ + K
Sbjct: 219 LNSQVWSALQMSKA 232
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 32.3 bits (72), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G P+H A YG+Y + LL++ + N+A+ K T LH AA +G +
Sbjct: 72 VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADL-WKFTPLHEAAAKGKYEICK 129
Query: 75 TILSLSPD 82
+L D
Sbjct: 130 LLLQHGAD 137
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALH 62
++KL + ++ + TP+H+AA Y +V LL Q +++ KD+ + LH
Sbjct: 28 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLH 84
Query: 63 LAAGRGHARTVETILSLSPDCYELVDNKG--WNF--LHYAMVSFRVEQLTNLLENNPLAR 118
A GH E ++ + V N W F LH A + E LL++
Sbjct: 85 NACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 139
Query: 119 SLINEGDAMENTPLHVL 135
+G NTPL ++
Sbjct: 140 KKNRDG----NTPLDLV 152
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA G+ V L + QS + + R+ T LH AAG VE +L D + D
Sbjct: 19 AAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KD 76
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
G LH A S+ ++ LL + +++N D + TPLH AA
Sbjct: 77 KGGLVPLHNA-CSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAA 121
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G P+H A YG+Y + LL++ + N+A+ K T LH AA +G +
Sbjct: 68 VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADL-WKFTPLHEAAAKGKYEICK 125
Query: 75 TILSLSPD 82
+L D
Sbjct: 126 LLLQHGAD 133
Score = 31.2 bits (69), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 56/134 (41%), Gaps = 17/134 (12%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALH 62
++KL + ++ + TP+H+AA Y +V LL Q +++ KD+ + LH
Sbjct: 24 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLH 80
Query: 63 LAAGRGHARTVETILSLSPDCYELVDNKG--WNF--LHYAMVSFRVEQLTNLLENNPLAR 118
A GH E ++ + V N W F LH A + E LL++
Sbjct: 81 NACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 135
Query: 119 SLINEGDAMENTPL 132
+G NTPL
Sbjct: 136 KKNRDG----NTPL 145
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA G+ V L + QS + + R+ T LH AAG VE +L D + D
Sbjct: 15 AAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KD 72
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
G LH A S+ ++ LL + +++N D + TPLH AA
Sbjct: 73 KGGLVPLHNA-CSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAA 117
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 32.0 bits (71), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
+ D+ G P+H A YG+Y + LL++ + N+A+ K T LH AA +G +
Sbjct: 70 VHAKDKGGLVPLHNACSYGHYEVAELLVK-HGAVVNVADL-WKFTPLHEAAAKGKYEICK 127
Query: 75 TILSLSPD 82
+L D
Sbjct: 128 LLLQHGAD 135
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 4 LRKLVEEKKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALH 62
++KL + ++ + TP+H+AA Y +V LL Q +++ KD+ + LH
Sbjct: 26 VKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL---QHGADVHAKDKGGLVPLH 82
Query: 63 LAAGRGHARTVETILSLSPDCYELVDNKG--WNF--LHYAMVSFRVEQLTNLLENNPLAR 118
A GH E ++ + V N W F LH A + E LL++
Sbjct: 83 NACSYGHYEVAELLVK-----HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT 137
Query: 119 SLINEGDAMENTPLHVL 135
+G NTPL ++
Sbjct: 138 KKNRDG----NTPLDLV 150
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 49/109 (44%), Gaps = 6/109 (5%)
Query: 29 AAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVD 88
AA G+ V L + QS + + R+ T LH AAG VE +L D + D
Sbjct: 17 AAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KD 74
Query: 89 NKGWNFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVLAA 137
G LH A S+ ++ LL + +++N D + TPLH AA
Sbjct: 75 KGGLVPLHNA-CSYGHYEVAELLVKHG---AVVNVADLWKFTPLHEAAA 119
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 32.0 bits (71), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 12/51 (23%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE----------IDQSASNIANKD 55
IK+ D GWTP+H AA++G +L+E + Q+A ++A++D
Sbjct: 227 IKDYD--GWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 59 TALHLAAGRGHARTVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLLEN 113
TALH+AA +G+ ++ ++ D + D GW LH A + E L+EN
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVEN 254
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.6 bits (70), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHARTVE 74
D+ G IH AA G + LLE Q+ NI + + + LHLAA GH R VE
Sbjct: 67 DRTGNAVIHDAARAGFLDTLQTLLEF-QADVNIEDNEGNLP-LHLAAKEGHLRVVE 120
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 31.2 bits (69), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRG 68
I D G T +H+AA N VN+LL A+ A D+ T L LAA G
Sbjct: 144 INAADNSGKTALHWAAAVNNTEAVNILLM--HHANRDAQDDKDETPLFLAAREG 195
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 4/96 (4%)
Query: 13 KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDRKMTALHLAAGRGHART 72
++K T+ G T +H A+ +G G+V LL+ + N TALHLA +
Sbjct: 105 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDL 163
Query: 73 VETILSLSPDCYELVDNKGWNF--LHYAMVSFRVEQ 106
V +L D V +G++ L + S R++Q
Sbjct: 164 VSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQ 198
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNI-------ANKDRKMTALHLAAGRGHAR 71
D G TP+H A G V +L QS + A T LHLA+ G+
Sbjct: 72 DFRGNTPLHLACEQGCLASVGVL---TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 128
Query: 72 TVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
VE ++SL D G LH A V + L +LL
Sbjct: 129 IVELLVSLGADVNAQEPCNGRTALHLA-VDLQNPDLVSLL 167
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 13 KMIKETDQYGWTPIHYAAYYGNYGMVNLLLEI--DQSASNIANKDRKMTALHLAAGRGHA 70
++K T+ G T +H A+ +G G+V LL+ + D +A N TALHLA +
Sbjct: 108 SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCN---GRTALHLAVDLQNP 164
Query: 71 RTVETILSLSPD 82
V +L D
Sbjct: 165 DLVSLLLKCGAD 176
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 40/100 (40%), Gaps = 11/100 (11%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNI-------ANKDRKMTALHLAAGRGHAR 71
D G TP+H A G V +L QS + A T LHLA+ G+
Sbjct: 75 DFRGNTPLHLACEQGCLASVGVL---TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131
Query: 72 TVETILSLSPDCYELVDNKGWNFLHYAMVSFRVEQLTNLL 111
VE ++SL D G LH A V + L +LL
Sbjct: 132 IVELLVSLGADVNAQEPCNGRTALHLA-VDLQNPDLVSLL 170
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLE 43
D+ G TP+H AA G+ +V LLLE
Sbjct: 36 DKNGSTPLHLAARNGHLEVVKLLLE 60
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3:
A Unique Member Of The Ikappab Protein Family
Length = 241
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 14 MIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSAS---NIANKDRKMTALHLA 64
M D+ G TP+H A GN V+ L+ + Q +I N R+ T LHLA
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQ-TPLHLA 53
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 5/74 (6%)
Query: 6 KLVEEKKKMIKETD-QYGWTPIHYAAYYGNYGMVNLLLEIDQSASNI-ANKDRKMTALHL 63
+L+ E+ I D + G +P+ +A + MV LLL Q +N+ A +ALH
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL---QHGANVNAQMYSGSSALHS 189
Query: 64 AAGRGHARTVETIL 77
A+GRG V T++
Sbjct: 190 ASGRGLLPLVRTLV 203
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 29.6 bits (65), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 33 GNYGMVN-LLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKG 91
G + +V ++ E+D + + N D +TALH A GH V+ ++ + D+ G
Sbjct: 48 GEFDLVQRIIYEVDDPS--LPN-DEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDG 103
Query: 92 WNFLHYAMVSFRVEQLTNLLEN 113
W LH A V+ L+E+
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
Score = 28.1 bits (61), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
+ D GWTP+H AA N + L+E
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 33 GNYGMVN-LLLEIDQSASNIANKDRKMTALHLAAGRGHARTVETILSLSPDCYELVDNKG 91
G + +V ++ E+D + + N D +TALH A GH V+ ++ + D+ G
Sbjct: 48 GEFDLVQRIIYEVDDPS--LPN-DEGITALHNAVCAGHTEIVKFLVQFGVN-VNAADSDG 103
Query: 92 WNFLHYAMVSFRVEQLTNLLEN 113
W LH A V+ L+E+
Sbjct: 104 WTPLHCAASCNNVQVCKFLVES 125
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLE 43
+ D GWTP+H AA N + L+E
Sbjct: 96 VNAADSDGWTPLHCAASCNNVQVCKFLVE 124
>pdb|2GN4|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN4|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadph And Udp-Glcnac
pdb|2GN6|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN6|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Glcnac
pdb|2GN8|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN8|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp
pdb|2GN9|A Chain A, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GN9|B Chain B, Crystal Structure Of Udp-glcnac Inverting 4,6-dehydratase
In Complex With Nadp And Udp-glc
pdb|2GNA|A Chain A, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
pdb|2GNA|B Chain B, Crystal Structure Of Udp-Glcnac Inverting 4,6-Dehydratase
In Complex With Nadp And Udp-Gal
Length = 344
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
Query: 129 NTPLHVLAAVRPKE-FHAVMIKKTQANYDA------VNKRNVSVRHIFSYGYPKLKEEIQ 181
NTP ++ +RP E H VMI K +++ + + +S + Y KL E+ Q
Sbjct: 260 NTPTKIIG-IRPGEKLHEVMIPKDESHLALEFEDFFIIQPTISFQTPKDYTLTKLHEKGQ 318
Query: 182 KLSKDFGRGQYSN 194
K++ DF ++N
Sbjct: 319 KVAPDFEYSSHNN 331
>pdb|1DTD|A Chain A, Crystal Structure Of The Complex Between The Leech
Carboxypeptidase Inhibitor And The Human
Carboxypeptidase A2 (Lci-Cpa2)
Length = 303
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 93 NFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL 135
NF Y + +++ NL+ +P S +N G + EN P++VL
Sbjct: 2 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVL 44
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 28.9 bits (63), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 51/127 (40%), Gaps = 21/127 (16%)
Query: 33 GNYGMVNLLLEIDQSASNIAN------KD---RKMTALHLAAGRGHARTVETILSLSPDC 83
G + +LL+I + N+ +D R TALH+A R VE +++ D
Sbjct: 58 GRNDTIPVLLDIAERTGNMREFINSPFRDIYYRGQTALHIAIERRCKHYVELLVAQGADV 117
Query: 84 --------YELVDNKGWNFLHYAMVSFRV----EQLTNLLENNPLARSLINEGDAMENTP 131
++ D G+ + +S + N L NP ++ + D+ NT
Sbjct: 118 HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTV 177
Query: 132 LHVLAAV 138
LH L A+
Sbjct: 178 LHALVAI 184
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 19 DQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIA-NKDRKM--TALHLAAGRGHARTVET 75
D+ G T +++A + G+ +V L + NI N+ K+ TALH AA +G+A V+
Sbjct: 103 DKAGSTALYWACHGGHKDIVEXLF----TQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 76 ILS 78
+L+
Sbjct: 159 LLA 161
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex
With V-1
Length = 123
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGH 69
K + + T + G P+HYAA G ++ LL ++I D+ +T L A GH
Sbjct: 29 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINAPDKHHITPLLSAVYEGH 85
Query: 70 ARTVETILSLSPD 82
V+ +LS D
Sbjct: 86 VSCVKLLLSKGAD 98
>pdb|1AYE|A Chain A, Human Procarboxypeptidase A2
Length = 401
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%)
Query: 93 NFLHYAMVSFRVEQLTNLLENNPLARSLINEGDAMENTPLHVL 135
NF Y + +++ NL+ +P S +N G + EN P++VL
Sbjct: 101 NFGAYHTLEEISQEMDNLVAEHPGLVSKVNIGSSFENRPMNVL 143
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 11 KKKMIKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGH 69
K + + T + G P+HYAA G ++ LL ++I D+ +T L A GH
Sbjct: 24 KGEDVNRTLEGGRKPLHYAADCGQLEILEFLL---LKGADINAPDKHHITPLLSAVYEGH 80
Query: 70 ARTVETILSLSPD 82
V+ +LS D
Sbjct: 81 VSCVKLLLSKGAD 93
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 28.5 bits (62), Expect = 6.2, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
Query: 15 IKETDQYGWTPIHYAAYYGNYGMVNLLLEIDQSASNIANKDR-KMTALHLAAGRGHARTV 73
+ D+ G TP+H AA G+ +V LLLE + +++ +D+ TA ++ G+
Sbjct: 50 VAAKDKNGSTPLHLAARNGHLEVVKLLLE---AGADVXAQDKFGKTAFDISIDNGNEDLA 106
Query: 74 ETI 76
E +
Sbjct: 107 EIL 109
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,552,427
Number of Sequences: 62578
Number of extensions: 361750
Number of successful extensions: 1172
Number of sequences better than 100.0: 98
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 56
Number of HSP's that attempted gapping in prelim test: 834
Number of HSP's gapped (non-prelim): 223
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)