Query 045349
Match_columns 152
No_of_seqs 132 out of 619
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 12:22:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00010 HLH: Helix-loop-helix 99.5 1.5E-14 3.3E-19 92.5 5.8 50 13-62 1-55 (55)
2 cd00083 HLH Helix-loop-helix d 99.5 1.9E-14 4E-19 92.7 6.2 54 12-65 3-59 (60)
3 smart00353 HLH helix loop heli 99.5 9.5E-14 2.1E-18 87.7 6.3 49 18-66 1-52 (53)
4 KOG1318 Helix loop helix trans 98.8 5.1E-09 1.1E-13 91.2 5.9 59 10-68 230-292 (411)
5 KOG2483 Upstream transcription 98.7 5.6E-08 1.2E-12 79.3 8.2 65 9-73 55-122 (232)
6 KOG1319 bHLHZip transcription 98.6 2.5E-07 5.5E-12 73.3 7.4 61 14-74 63-130 (229)
7 PLN03217 transcription factor 98.4 5.6E-07 1.2E-11 62.9 5.9 54 25-78 19-78 (93)
8 KOG3561 Aryl-hydrocarbon recep 98.4 4.5E-07 9.9E-12 84.7 5.8 59 6-64 13-75 (803)
9 KOG4304 Transcriptional repres 98.3 2.8E-07 6.1E-12 76.0 2.3 54 12-65 31-92 (250)
10 KOG4029 Transcription factor H 98.2 1.4E-06 3E-11 70.5 4.1 62 10-71 106-171 (228)
11 KOG0561 bHLH transcription fac 98.0 7.3E-06 1.6E-10 69.2 3.9 55 14-68 61-117 (373)
12 KOG3960 Myogenic helix-loop-he 97.8 5.5E-05 1.2E-09 62.5 7.0 62 14-75 119-182 (284)
13 KOG2588 Predicted DNA-binding 97.6 3.3E-05 7.2E-10 73.1 3.2 64 11-74 274-338 (953)
14 cd04895 ACT_ACR_1 ACT domain-c 97.3 0.0016 3.5E-08 44.2 7.6 41 103-143 9-49 (72)
15 cd04900 ACT_UUR-like_1 ACT dom 97.3 0.0017 3.8E-08 43.1 7.6 47 96-143 3-50 (73)
16 cd04927 ACT_ACR-like_2 Second 97.2 0.0027 5.9E-08 42.8 7.9 45 98-143 4-49 (76)
17 cd04897 ACT_ACR_3 ACT domain-c 97.1 0.0039 8.4E-08 42.6 7.5 45 99-144 6-50 (75)
18 cd04926 ACT_ACR_4 C-terminal 97.0 0.0056 1.2E-07 40.7 7.8 47 96-143 3-49 (72)
19 cd04896 ACT_ACR-like_3 ACT dom 97.0 0.0049 1.1E-07 42.1 7.3 46 99-145 5-52 (75)
20 cd04925 ACT_ACR_2 ACT domain-c 97.0 0.0069 1.5E-07 40.5 7.7 43 101-143 6-48 (74)
21 cd04928 ACT_TyrKc Uncharacteri 96.7 0.016 3.5E-07 38.8 7.5 47 96-143 3-50 (68)
22 KOG4447 Transcription factor T 96.5 0.0015 3.2E-08 50.5 2.0 54 12-65 77-132 (173)
23 cd04899 ACT_ACR-UUR-like_2 C-t 96.5 0.026 5.7E-07 36.3 7.7 42 102-143 7-48 (70)
24 PRK00275 glnD PII uridylyl-tra 95.8 0.16 3.4E-06 48.8 12.2 61 82-143 800-862 (895)
25 KOG4395 Transcription factor A 95.7 0.016 3.5E-07 48.1 4.4 56 10-65 171-229 (285)
26 cd04873 ACT_UUR-ACR-like ACT d 95.6 0.14 3E-06 32.4 7.8 46 97-143 3-48 (70)
27 KOG3898 Transcription factor N 95.4 0.0084 1.8E-07 49.6 1.9 53 13-65 72-127 (254)
28 PRK05007 PII uridylyl-transfer 95.1 0.1 2.2E-06 50.0 8.3 60 83-143 795-856 (884)
29 PF13740 ACT_6: ACT domain; PD 95.0 0.21 4.6E-06 33.3 7.4 44 101-144 8-51 (76)
30 PF01842 ACT: ACT domain; Int 95.0 0.28 6.1E-06 30.6 7.7 36 97-133 3-38 (66)
31 PRK04374 PII uridylyl-transfer 94.9 0.18 3.8E-06 48.4 9.4 62 82-144 782-845 (869)
32 PF13291 ACT_4: ACT domain; PD 94.8 0.32 7E-06 32.3 8.0 43 103-145 14-58 (80)
33 KOG3910 Helix loop helix trans 94.6 0.035 7.5E-07 50.1 3.4 56 13-68 526-585 (632)
34 PRK05092 PII uridylyl-transfer 94.5 0.25 5.4E-06 47.6 9.3 60 83-143 830-891 (931)
35 PRK03059 PII uridylyl-transfer 94.4 0.28 6.1E-06 46.9 9.3 58 83-141 773-832 (856)
36 TIGR01693 UTase_glnD [Protein- 94.3 1.4 3.1E-05 41.9 13.9 61 83-144 655-718 (850)
37 PRK03381 PII uridylyl-transfer 94.3 0.31 6.8E-06 46.1 9.4 60 83-143 694-755 (774)
38 PRK03381 PII uridylyl-transfer 94.2 0.37 7.9E-06 45.6 9.5 60 83-143 587-647 (774)
39 PRK01759 glnD PII uridylyl-tra 93.8 0.28 6E-06 46.9 8.0 60 83-143 770-831 (854)
40 cd04893 ACT_GcvR_1 ACT domains 93.7 0.54 1.2E-05 31.4 7.2 47 97-144 4-50 (77)
41 PRK01759 glnD PII uridylyl-tra 93.1 0.75 1.6E-05 44.1 9.6 60 83-143 664-726 (854)
42 PRK00275 glnD PII uridylyl-tra 92.8 0.74 1.6E-05 44.3 9.3 50 93-143 703-753 (895)
43 PRK05007 PII uridylyl-transfer 92.6 0.89 1.9E-05 43.7 9.5 60 83-143 688-750 (884)
44 cd04886 ACT_ThrD-II-like C-ter 92.5 1.2 2.5E-05 27.8 7.3 42 103-144 6-52 (73)
45 COG2844 GlnD UTP:GlnB (protein 92.5 0.4 8.6E-06 45.8 6.8 62 82-143 777-839 (867)
46 PRK03059 PII uridylyl-transfer 92.4 0.64 1.4E-05 44.5 8.3 60 83-143 665-727 (856)
47 TIGR01693 UTase_glnD [Protein- 92.4 0.64 1.4E-05 44.3 8.3 60 83-143 766-827 (850)
48 PRK05092 PII uridylyl-transfer 92.3 1.1 2.4E-05 43.1 9.8 60 83-143 719-781 (931)
49 cd04887 ACT_MalLac-Enz ACT_Mal 92.2 1.6 3.5E-05 28.0 7.8 42 103-144 7-49 (74)
50 PRK04374 PII uridylyl-transfer 91.9 1.4 3.1E-05 42.4 9.9 51 92-143 688-739 (869)
51 KOG3559 Transcriptional regula 91.4 0.24 5.1E-06 44.1 3.8 43 19-61 7-53 (598)
52 cd04869 ACT_GcvR_2 ACT domains 91.2 1.3 2.9E-05 29.0 6.6 34 98-132 3-36 (81)
53 cd04872 ACT_1ZPV ACT domain pr 90.8 0.8 1.7E-05 31.1 5.3 47 97-144 4-50 (88)
54 PRK00194 hypothetical protein; 90.7 0.85 1.8E-05 30.9 5.4 47 97-144 6-52 (90)
55 cd04875 ACT_F4HF-DF N-terminal 90.5 1.5 3.3E-05 28.6 6.3 44 101-144 5-48 (74)
56 cd04870 ACT_PSP_1 CT domains f 90.4 1.4 3.1E-05 28.9 6.2 42 100-141 4-45 (75)
57 cd04874 ACT_Af1403 N-terminal 90.1 2.8 6E-05 26.1 7.1 35 97-132 3-37 (72)
58 cd04877 ACT_TyrR N-terminal AC 89.9 2 4.4E-05 28.1 6.6 41 97-139 3-43 (74)
59 cd04880 ACT_AAAH-PDT-like ACT 89.7 2.4 5.3E-05 27.6 6.8 43 103-145 7-50 (75)
60 cd04888 ACT_PheB-BS C-terminal 89.3 2.8 6.1E-05 26.9 6.9 42 104-145 9-51 (76)
61 PRK04435 hypothetical protein; 88.4 3.1 6.7E-05 31.5 7.4 55 91-146 66-121 (147)
62 KOG3558 Hypoxia-inducible fact 87.3 0.61 1.3E-05 43.8 3.4 41 20-60 53-97 (768)
63 cd04882 ACT_Bt0572_2 C-termina 87.3 2.5 5.5E-05 26.1 5.5 40 103-142 7-48 (65)
64 KOG3560 Aryl-hydrocarbon recep 87.0 0.67 1.5E-05 42.6 3.5 38 22-59 34-75 (712)
65 cd04889 ACT_PDH-BS-like C-term 86.5 4.7 0.0001 24.6 6.3 40 103-142 6-46 (56)
66 cd04879 ACT_3PGDH-like ACT_3PG 86.3 4.6 0.0001 24.7 6.3 39 103-141 7-47 (71)
67 cd04905 ACT_CM-PDT C-terminal 85.7 6.4 0.00014 26.0 7.0 43 103-145 9-52 (80)
68 KOG3582 Mlx interactors and re 85.4 0.26 5.7E-06 46.2 0.1 60 12-71 650-714 (856)
69 cd04908 ACT_Bt0572_1 N-termina 85.3 5.9 0.00013 25.2 6.5 32 103-134 9-40 (66)
70 cd04876 ACT_RelA-SpoT ACT dom 84.3 6.4 0.00014 23.2 6.9 40 104-143 7-47 (71)
71 cd02116 ACT ACT domains are co 83.1 6 0.00013 22.0 6.7 29 104-132 7-35 (60)
72 COG2844 GlnD UTP:GlnB (protein 83.1 3.9 8.5E-05 39.3 6.7 57 86-143 676-733 (867)
73 cd04902 ACT_3PGDH-xct C-termin 82.8 4.1 8.9E-05 25.7 5.0 42 102-143 6-49 (73)
74 cd04884 ACT_CBS C-terminal ACT 82.3 11 0.00023 24.3 6.8 29 103-131 7-35 (72)
75 KOG4447 Transcription factor T 81.3 1.4 3E-05 34.3 2.5 46 17-62 26-73 (173)
76 cd04904 ACT_AAAH ACT domain of 81.1 6.6 0.00014 25.9 5.6 42 103-144 8-50 (74)
77 cd04868 ACT_AK-like ACT domain 79.2 10 0.00022 22.1 5.7 36 105-140 13-48 (60)
78 PF05687 DUF822: Plant protein 78.4 3 6.4E-05 32.1 3.5 37 4-40 2-38 (150)
79 cd04931 ACT_PAH ACT domain of 76.9 12 0.00026 26.0 6.1 48 97-145 17-65 (90)
80 cd04903 ACT_LSD C-terminal ACT 76.7 15 0.00031 22.5 6.5 28 103-130 7-34 (71)
81 PRK08577 hypothetical protein; 76.1 28 0.00061 25.5 8.4 48 97-145 59-108 (136)
82 cd04929 ACT_TPH ACT domain of 74.7 17 0.00036 24.3 6.1 42 103-144 8-50 (74)
83 PRK07334 threonine dehydratase 74.6 22 0.00047 30.9 8.4 49 96-145 328-381 (403)
84 cd04881 ACT_HSDH-Hom ACT_HSDH_ 73.3 19 0.00042 22.4 6.6 39 104-142 9-49 (79)
85 cd04922 ACT_AKi-HSDH-ThrA_2 AC 72.0 20 0.00044 22.0 6.1 37 104-140 13-49 (66)
86 cd04878 ACT_AHAS N-terminal AC 71.1 21 0.00045 21.8 7.1 41 103-143 8-50 (72)
87 cd04883 ACT_AcuB C-terminal AC 69.3 25 0.00055 22.0 7.6 40 104-143 10-51 (72)
88 cd04901 ACT_3PGDH C-terminal A 68.7 4.3 9.4E-05 25.5 2.1 41 102-142 6-46 (69)
89 cd04919 ACT_AK-Hom3_2 ACT doma 68.2 19 0.00042 22.2 5.1 37 104-140 13-49 (66)
90 cd04909 ACT_PDH-BS C-terminal 68.1 27 0.00059 21.9 6.3 29 103-131 9-37 (69)
91 PF13710 ACT_5: ACT domain; PD 66.3 17 0.00037 23.4 4.6 38 105-142 2-41 (63)
92 cd04890 ACT_AK-like_1 ACT doma 66.2 20 0.00044 22.1 4.9 35 105-141 13-47 (62)
93 cd04930 ACT_TH ACT domain of t 66.2 21 0.00045 26.0 5.5 42 103-144 49-91 (115)
94 COG3074 Uncharacterized protei 65.5 12 0.00027 25.4 3.8 26 51-76 13-38 (79)
95 PRK06027 purU formyltetrahydro 65.2 35 0.00076 28.5 7.4 37 97-134 9-47 (286)
96 TIGR00655 PurU formyltetrahydr 64.8 34 0.00073 28.6 7.2 44 98-142 4-49 (280)
97 PRK10872 relA (p)ppGpp synthet 64.4 58 0.0013 31.2 9.3 60 86-145 653-718 (743)
98 cd04918 ACT_AK1-AT_2 ACT domai 63.5 28 0.00061 22.0 5.2 37 104-140 12-48 (65)
99 PRK11589 gcvR glycine cleavage 63.1 14 0.0003 29.3 4.3 38 100-137 13-50 (190)
100 TIGR00691 spoT_relA (p)ppGpp s 63.1 64 0.0014 30.4 9.3 43 103-145 618-661 (683)
101 PF02120 Flg_hook: Flagellar h 61.8 43 0.00093 22.0 6.3 47 85-131 28-79 (85)
102 cd04892 ACT_AK-like_2 ACT doma 60.7 32 0.00069 20.3 4.9 36 104-139 12-47 (65)
103 PLN02705 beta-amylase 59.9 14 0.0003 34.7 4.2 26 13-38 84-109 (681)
104 cd04915 ACT_AK-Ectoine_2 ACT d 59.8 43 0.00093 21.4 5.9 37 104-140 13-49 (66)
105 PF02344 Myc-LZ: Myc leucine z 59.7 11 0.00025 21.6 2.4 18 20-37 12-29 (32)
106 PF06005 DUF904: Protein of un 59.2 21 0.00045 24.0 4.1 26 50-75 12-37 (72)
107 PRK11895 ilvH acetolactate syn 59.0 46 0.001 25.7 6.5 41 103-143 10-52 (161)
108 PRK11092 bifunctional (p)ppGpp 58.5 84 0.0018 29.8 9.3 44 102-145 633-677 (702)
109 PRK13011 formyltetrahydrofolat 57.5 53 0.0011 27.5 7.1 48 96-144 9-56 (286)
110 TIGR02263 benz_CoA_red_C benzo 56.4 64 0.0014 27.9 7.7 85 27-128 176-266 (380)
111 PF09789 DUF2353: Uncharacteri 56.2 50 0.0011 28.4 6.8 55 24-78 38-101 (319)
112 TIGR00119 acolac_sm acetolacta 55.6 72 0.0016 24.5 7.1 41 103-143 9-51 (157)
113 PF09849 DUF2076: Uncharacteri 55.5 50 0.0011 27.4 6.5 48 25-74 6-73 (247)
114 PRK11589 gcvR glycine cleavage 55.0 1E+02 0.0023 24.3 9.0 47 100-146 100-150 (190)
115 cd04912 ACT_AKiii-LysC-EC-like 54.8 45 0.00097 21.7 5.2 37 104-142 13-49 (75)
116 PRK15422 septal ring assembly 54.7 25 0.00054 24.3 3.8 27 50-76 12-38 (79)
117 COG3830 ACT domain-containing 54.0 12 0.00025 26.5 2.2 38 100-137 8-45 (90)
118 PF14992 TMCO5: TMCO5 family 53.9 23 0.00049 30.0 4.3 28 47-74 142-169 (280)
119 cd04916 ACT_AKiii-YclM-BS_2 AC 53.5 50 0.0011 20.1 5.1 36 104-139 13-48 (66)
120 cd04932 ACT_AKiii-LysC-EC_1 AC 53.0 60 0.0013 21.5 5.6 37 104-142 13-49 (75)
121 cd04937 ACT_AKi-DapG-BS_2 ACT 52.6 49 0.0011 20.7 4.9 24 104-127 13-36 (64)
122 cd04885 ACT_ThrD-I Tandem C-te 52.3 53 0.0012 20.8 5.1 28 103-131 6-33 (68)
123 cd04935 ACT_AKiii-DAPDC_1 ACT 51.9 53 0.0011 21.7 5.1 36 105-142 14-49 (75)
124 PF14689 SPOB_a: Sensor_kinase 51.8 49 0.0011 21.2 4.8 41 22-69 17-57 (62)
125 cd04891 ACT_AK-LysC-DapG-like_ 51.7 47 0.001 19.4 5.8 27 104-130 10-36 (61)
126 cd04923 ACT_AK-LysC-DapG-like_ 51.2 52 0.0011 19.7 6.1 33 105-139 13-45 (63)
127 PF13840 ACT_7: ACT domain ; P 50.8 30 0.00065 22.2 3.7 24 104-127 19-42 (65)
128 cd04921 ACT_AKi-HSDH-ThrA-like 50.7 57 0.0012 20.9 5.1 35 105-139 14-48 (80)
129 PF00170 bZIP_1: bZIP transcri 50.2 25 0.00053 22.5 3.2 20 56-75 26-45 (64)
130 COG4492 PheB ACT domain-contai 49.5 39 0.00085 25.8 4.6 42 104-145 81-123 (150)
131 COG0216 PrfA Protein chain rel 49.1 77 0.0017 27.8 6.9 84 46-134 73-162 (363)
132 cd04894 ACT_ACR-like_1 ACT dom 48.6 80 0.0017 21.1 5.6 38 96-134 2-39 (69)
133 PRK11020 hypothetical protein; 47.4 46 0.00099 24.6 4.5 53 21-73 3-55 (118)
134 smart00338 BRLZ basic region l 47.0 28 0.00061 22.2 3.1 20 56-75 26-45 (65)
135 cd04924 ACT_AK-Arch_2 ACT doma 46.5 65 0.0014 19.5 5.2 36 104-139 13-48 (66)
136 cd04933 ACT_AK1-AT_1 ACT domai 45.8 74 0.0016 21.4 5.1 36 104-141 13-48 (78)
137 PRK11152 ilvM acetolactate syn 44.6 92 0.002 21.0 5.5 31 103-133 11-41 (76)
138 cd04934 ACT_AK-Hom3_1 CT domai 44.6 75 0.0016 20.9 5.0 35 105-141 14-48 (73)
139 PRK11899 prephenate dehydratas 43.8 92 0.002 26.1 6.5 43 103-145 202-245 (279)
140 cd04913 ACT_AKii-LysC-BS-like_ 43.6 76 0.0016 19.4 5.6 25 104-128 11-35 (75)
141 PRK13010 purU formyltetrahydro 43.0 90 0.002 26.2 6.3 41 97-138 12-54 (289)
142 cd04936 ACT_AKii-LysC-BS-like_ 42.1 75 0.0016 18.9 5.9 33 105-139 13-45 (63)
143 PHA03386 P10 fibrous body prot 41.9 53 0.0011 23.4 4.0 33 45-77 1-33 (94)
144 PRK11898 prephenate dehydratas 40.8 92 0.002 25.9 6.0 41 104-144 206-247 (283)
145 TIGR01834 PHA_synth_III_E poly 39.5 75 0.0016 27.4 5.3 48 25-76 269-316 (320)
146 PRK08198 threonine dehydratase 38.7 1.7E+02 0.0037 25.2 7.6 42 103-144 335-381 (404)
147 PRK06737 acetolactate synthase 36.5 95 0.0021 21.0 4.5 31 103-133 10-40 (76)
148 PRK10622 pheA bifunctional cho 35.3 1.4E+02 0.003 26.2 6.5 43 103-145 305-348 (386)
149 COG2061 ACT-domain-containing 34.6 1.6E+02 0.0034 23.1 5.9 42 103-144 13-57 (170)
150 PF08826 DMPK_coil: DMPK coile 33.8 98 0.0021 20.2 4.1 28 48-75 31-58 (61)
151 PF10737 GerPC: Spore germinat 32.9 56 0.0012 25.8 3.3 42 58-99 1-49 (176)
152 PRK00227 glnD PII uridylyl-tra 31.2 2E+02 0.0042 27.4 7.1 44 96-140 548-591 (693)
153 PF08946 Osmo_CC: Osmosensory 31.2 67 0.0014 19.9 2.7 19 58-76 21-39 (46)
154 PRK06382 threonine dehydratase 31.1 1.7E+02 0.0037 25.4 6.4 42 103-144 338-384 (406)
155 COG0317 SpoT Guanosine polypho 30.2 1.7E+02 0.0037 28.0 6.5 49 95-143 626-676 (701)
156 TIGR01127 ilvA_1Cterm threonin 29.9 2.9E+02 0.0063 23.5 7.5 42 103-144 313-359 (380)
157 PRK06635 aspartate kinase; Rev 29.6 2.5E+02 0.0054 24.1 7.1 29 104-132 272-300 (404)
158 PF04508 Pox_A_type_inc: Viral 29.3 83 0.0018 16.7 2.6 17 58-74 3-19 (23)
159 cd09235 V_Alix Middle V-domain 29.2 1.2E+02 0.0027 25.7 5.1 42 33-75 169-210 (339)
160 KOG3896 Dynactin, subunit p62 29.2 81 0.0018 27.8 3.9 28 48-75 138-165 (449)
161 PRK04390 rnpA ribonuclease P; 29.1 1.8E+02 0.0038 21.1 5.2 31 12-42 51-82 (120)
162 PF14197 Cep57_CLD_2: Centroso 28.8 1.4E+02 0.003 19.8 4.2 31 44-74 35-65 (69)
163 COG4747 ACT domain-containing 28.5 1.6E+02 0.0035 22.2 4.9 36 97-133 6-41 (142)
164 PLN02905 beta-amylase 28.2 74 0.0016 30.2 3.7 28 12-39 85-112 (702)
165 PF06305 DUF1049: Protein of u 28.0 68 0.0015 20.3 2.6 19 57-75 49-67 (68)
166 cd09236 V_AnPalA_UmRIM20_like 27.3 1.4E+02 0.0029 25.6 5.0 44 33-76 172-215 (353)
167 KOG3582 Mlx interactors and re 27.3 19 0.0004 34.4 -0.3 59 11-72 785-848 (856)
168 PF04558 tRNA_synt_1c_R1: Glut 27.2 84 0.0018 24.3 3.4 36 28-63 50-99 (164)
169 PRK06291 aspartate kinase; Pro 27.0 3.4E+02 0.0073 24.1 7.6 37 104-140 333-369 (465)
170 PF08644 SPT16: FACT complex s 26.9 1.3E+02 0.0028 23.1 4.4 29 48-76 77-105 (152)
171 TIGR00657 asp_kinases aspartat 26.5 4.1E+02 0.0089 23.2 8.0 35 106-140 315-349 (441)
172 KOG3304 Surfeit family protein 26.3 1.3E+02 0.0028 22.9 4.1 17 1-17 1-17 (148)
173 PF10393 Matrilin_ccoil: Trime 26.1 1.5E+02 0.0033 18.3 3.8 27 50-76 17-43 (47)
174 TIGR00986 3a0801s05tom22 mitoc 25.9 46 0.001 25.5 1.7 36 26-61 49-84 (145)
175 COG4710 Predicted DNA-binding 25.3 2.1E+02 0.0046 19.6 4.6 33 27-63 15-48 (80)
176 PF15392 Joubert: Joubert synd 24.8 65 0.0014 27.9 2.5 29 11-39 54-82 (329)
177 PF04420 CHD5: CHD5-like prote 24.6 1.9E+02 0.0042 21.9 5.0 47 18-75 39-85 (161)
178 TIGR01268 Phe4hydrox_tetr phen 23.7 2.2E+02 0.0048 25.6 5.8 42 103-144 24-66 (436)
179 PRK13702 replication protein; 23.4 2.6E+02 0.0057 19.5 4.9 41 16-56 23-76 (85)
180 cd01917 ACS_2 Acetyl-CoA synth 23.1 4E+02 0.0087 22.7 6.9 101 25-127 53-161 (287)
181 PHA02148 hypothetical protein 22.8 1.9E+02 0.004 20.8 4.2 39 38-76 19-57 (110)
182 PF07716 bZIP_2: Basic region 22.8 1.4E+02 0.0029 18.4 3.2 19 56-74 25-43 (54)
183 PF14193 DUF4315: Domain of un 21.9 1.6E+02 0.0035 20.3 3.7 26 51-76 10-35 (83)
184 cd04906 ACT_ThrD-I_1 First of 21.8 2.5E+02 0.0054 18.6 5.3 26 103-130 9-34 (85)
185 PF07334 IFP_35_N: Interferon- 21.6 1.7E+02 0.0038 20.0 3.7 27 51-77 2-28 (76)
186 KOG1029 Endocytic adaptor prot 21.6 3.8E+02 0.0082 26.5 7.0 25 51-75 481-505 (1118)
187 COG3978 Acetolactate synthase 21.5 2.3E+02 0.005 19.8 4.3 30 104-133 12-41 (86)
188 KOG1854 Mitochondrial inner me 21.1 3.1E+02 0.0067 26.0 6.3 47 19-69 283-338 (657)
189 PRK08210 aspartate kinase I; R 20.3 5.4E+02 0.012 22.1 7.5 24 106-129 283-306 (403)
190 PRK05771 V-type ATP synthase s 20.3 4.6E+02 0.0099 24.3 7.4 21 22-42 49-69 (646)
191 PF02577 DNase-RNase: Bifuncti 20.3 2.6E+02 0.0056 20.4 4.8 34 110-143 55-90 (135)
192 COG1076 DjlA DnaJ-domain-conta 20.1 1.1E+02 0.0024 23.5 2.8 56 17-73 116-171 (174)
193 PF02370 M: M protein repeat; 20.0 1.5E+02 0.0033 15.4 2.6 16 59-74 4-19 (21)
194 PF03791 KNOX2: KNOX2 domain ; 20.0 1.5E+02 0.0033 18.7 3.0 21 48-68 30-50 (52)
No 1
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.54 E-value=1.5e-14 Score=92.50 Aligned_cols=50 Identities=40% Similarity=0.569 Sum_probs=47.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHH
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN-----SKLSMPQILDDATSYIMHLQ 62 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-----~K~~~~~il~~Ai~YIk~L~ 62 (152)
+|..|+..||+||..||+.|..|+.+||.. .|.|+++||..||+||++||
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 478999999999999999999999999987 78999999999999999997
No 2
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.53 E-value=1.9e-14 Score=92.69 Aligned_cols=54 Identities=39% Similarity=0.549 Sum_probs=51.4
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
..+..|+..||+||.+||+.|..|++++|.. .|+|+++||..|++||+.|++.+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLPPSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999998 89999999999999999999876
No 3
>smart00353 HLH helix loop helix domain.
Probab=99.48 E-value=9.5e-14 Score=87.71 Aligned_cols=49 Identities=39% Similarity=0.569 Sum_probs=45.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCC---CCCCChhhHHHHHHHHHHHHHHHHH
Q 045349 18 NINEKHRRMLMKDLISQLASLIPS---NSKLSMPQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 18 ~~~ER~RR~~m~~~~~~LrsllP~---~~K~~~~~il~~Ai~YIk~L~~~v~ 66 (152)
+..||+||.+||+.|..|++++|. ..|.|+++||..|++||+.|+++++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLPNNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999999999999995 4799999999999999999999875
No 4
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=98.83 E-value=5.1e-09 Score=91.21 Aligned_cols=59 Identities=31% Similarity=0.398 Sum_probs=53.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 045349 10 GSSSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESL 68 (152)
Q Consensus 10 ~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L 68 (152)
...+|..||+.||+||..+|+.+..|..|||.. .|+.|..||.-+++||+.||+..++.
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~~~~~~nKgtILk~s~dYIr~Lqq~~q~~ 292 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNSEDMKSNKGTILKASCDYIRELQQTLQRA 292 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCcchhhcccchhhHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999988 68889999999999999998877633
No 5
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=98.72 E-value=5.6e-08 Score=79.33 Aligned_cols=65 Identities=31% Similarity=0.370 Sum_probs=55.3
Q ss_pred CCCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045349 9 AGSSSRAQRNINEKHRRMLMKDLISQLASLIPSN--SKLS-MPQILDDATSYIMHLQKNKESLERKKA 73 (152)
Q Consensus 9 ~~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~-~~~il~~Ai~YIk~L~~~v~~L~~~k~ 73 (152)
++.+.|..||..||+||.++++.|..|+.+||.. .+.. ...||..|..||+.|+....+.....+
T Consensus 55 ~~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e 122 (232)
T KOG2483|consen 55 SAASSRAHHNALEKRRRAHLKDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIE 122 (232)
T ss_pred CCCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHH
Confidence 5677899999999999999999999999999988 4444 699999999999999877655554433
No 6
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription]
Probab=98.56 E-value=2.5e-07 Score=73.32 Aligned_cols=61 Identities=31% Similarity=0.426 Sum_probs=53.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 14 RAQRNINEKHRRMLMKDLISQLASLIPSN-------SKLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 14 ~~~h~~~ER~RR~~m~~~~~~LrsllP~~-------~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
|..|--+||+||..+|.-|..|..|||.. .|.+++-||..||+||..|...+.+-+.+...
T Consensus 63 r~aHtqaEqkRRdAIk~GYddLq~LvP~cq~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~ 130 (229)
T KOG1319|consen 63 RRAHTQAEQKRRDAIKRGYDDLQTLVPTCQQQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST 130 (229)
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77899999999999999999999999977 38999999999999999998877666655443
No 7
>PLN03217 transcription factor ATBS1; Provisional
Probab=98.44 E-value=5.6e-07 Score=62.86 Aligned_cols=54 Identities=28% Similarity=0.490 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCCCC------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 045349 25 RMLMKDLISQLASLIPSN------SKLSMPQILDDATSYIMHLQKNKESLERKKALLKGD 78 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~------~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~ 78 (152)
-++|+++.++|+.|+|.. +|.+.+-+|.|+.+||+.|+.+|+.|.++..+|...
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~LL~t 78 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSELLAN 78 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 478999999999999976 688999999999999999999999999999887654
No 8
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription]
Probab=98.39 E-value=4.5e-07 Score=84.68 Aligned_cols=59 Identities=25% Similarity=0.364 Sum_probs=52.8
Q ss_pred CCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHH
Q 045349 6 SSAAGSSSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKN 64 (152)
Q Consensus 6 ~~~~~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~ 64 (152)
+.+....+|..|+.+||+||++||..+..|.++||.. -|+||..||..||.+|+.+++.
T Consensus 13 ~d~k~r~~Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 13 SDSKDRKKRENRSEIEKRRRDQMNKYIEELSEMVPTNASLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred ccchhhhccccchhHHHHHHHHHHHHHHHHHHhhhcchhcccCchHHHHHHHHHHHHHHHhhh
Confidence 3444566789999999999999999999999999987 6999999999999999998875
No 9
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription]
Probab=98.31 E-value=2.8e-07 Score=76.00 Aligned_cols=54 Identities=28% Similarity=0.453 Sum_probs=48.0
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC--------CCCChhhHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN--------SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--------~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
.++..|-+.||+||.+||+.+..|+.|||.. +|+.|++||.-|++|++.|+...
T Consensus 31 ~rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~~ 92 (250)
T KOG4304|consen 31 YRKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRSQ 92 (250)
T ss_pred HhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhccc
Confidence 3456677899999999999999999999955 68999999999999999998754
No 10
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription]
Probab=98.20 E-value=1.4e-06 Score=70.49 Aligned_cols=62 Identities=34% Similarity=0.405 Sum_probs=54.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045349 10 GSSSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESLERK 71 (152)
Q Consensus 10 ~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~ 71 (152)
....+..+|..||+|=+.+|..|..||.+||.. +|.+|.++|..||.||..|++-++.-+..
T Consensus 106 ~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~~~~~kklSKveTLr~A~~YI~~L~~lL~~~~~~ 171 (228)
T KOG4029|consen 106 TSAQRQARNARERQRVQSVNSAFAELRALLPTEPPQSKKLSKVETLRLATSYIRYLTKLLATQEAP 171 (228)
T ss_pred hhhhhhhhhhhhhhcccchhhhhHHHHhcCCCCCCcccccCcccchHHHHHHHHHHHHHhcccccC
Confidence 455678889999999999999999999999965 78999999999999999999888665543
No 11
>KOG0561 consensus bHLH transcription factor [Transcription]
Probab=97.96 E-value=7.3e-06 Score=69.20 Aligned_cols=55 Identities=33% Similarity=0.479 Sum_probs=47.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHH
Q 045349 14 RAQRNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQKNKESL 68 (152)
Q Consensus 14 ~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~~~v~~L 68 (152)
|..-|-.||+|=+-+|.-|..||+|+|.. .|.+|+-||..+.+||.+|+..--+|
T Consensus 61 ReIANsNERRRMQSINAGFqsLr~LlPr~eGEKLSKAAILQQTa~yI~~Le~~Kt~l 117 (373)
T KOG0561|consen 61 REIANSNERRRMQSINAGFQSLRALLPRKEGEKLSKAAILQQTADYIHQLEGHKTEL 117 (373)
T ss_pred HHhhcchHHHHHHhhhHHHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHHhccccc
Confidence 34446689999999999999999999988 89999999999999999997654433
No 12
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription]
Probab=97.85 E-value=5.5e-05 Score=62.46 Aligned_cols=62 Identities=21% Similarity=0.267 Sum_probs=51.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHhc-CCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 14 RAQRNINEKHRRMLMKDLISQLASL-IPSN-SKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 14 ~~~h~~~ER~RR~~m~~~~~~Lrsl-lP~~-~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
|..-.+.||+|=++.|+.|.+|..- .|+. .++.|..||..||.||..||.-++++.+....+
T Consensus 119 RKAATMRERRRLkKVNEAFE~LKRrT~~NPNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~~~~~ 182 (284)
T KOG3960|consen 119 RKAATMRERRRLKKVNEAFETLKRRTSSNPNQRLPKVEILRSAIRYIERLQALLQEQDQAEKGL 182 (284)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccHHHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 4444589999999999999999643 4555 799999999999999999999999998765533
No 13
>KOG2588 consensus Predicted DNA-binding protein [Transcription]
Probab=97.65 E-value=3.3e-05 Score=73.07 Aligned_cols=64 Identities=33% Similarity=0.457 Sum_probs=57.4
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSN-SKLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
..+|..||+.|++-|--+|++...|+.++|.. .|..++..+..||+||++|+..-+.|....+.
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g~~aKl~kSavLr~ai~~i~dl~~~nq~lk~~~~~ 338 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPGTEAKLNKSAVLRKAIDYIEDLQGYNQKLKLENAS 338 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCccHhhhhhhhhHHHHHHHHHHhhccccccchhhhh
Confidence 57899999999999999999999999999988 79999999999999999998877766655443
No 14
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.34 E-value=0.0016 Score=44.15 Aligned_cols=41 Identities=7% Similarity=0.037 Sum_probs=37.7
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.+++|+|++|.++|.++||+|..|.+++.|+++..+|.+.-
T Consensus 9 ~DRpGLL~~i~~~l~~~gl~I~~AkIsT~Gerv~DvFyV~d 49 (72)
T cd04895 9 ARKPGILLEAVQVLTDLDLCITKAYISSDGGWFMDVFHVTD 49 (72)
T ss_pred CCcCCHHHHHHHHHHHCCcEEEEEEEeecCCeEEEEEEEEC
Confidence 57899999999999999999999999999999888877764
No 15
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.33 E-value=0.0017 Score=43.07 Aligned_cols=47 Identities=15% Similarity=0.197 Sum_probs=39.1
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEee-CCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNS-GDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~-~~~v~~ti~~qv 143 (152)
+|.+.| .+++|+|+++..+|..+|++|++|.+.+. ++.++.+|...-
T Consensus 3 ~i~v~~-~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~ 50 (73)
T cd04900 3 EVFIYT-PDRPGLFARIAGALDQLGLNILDARIFTTRDGYALDTFVVLD 50 (73)
T ss_pred EEEEEe-cCCCCHHHHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEEC
Confidence 455555 47899999999999999999999999877 688888877753
No 16
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.25 E-value=0.0027 Score=42.82 Aligned_cols=45 Identities=20% Similarity=0.265 Sum_probs=38.8
Q ss_pred EEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEE
Q 045349 98 NLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKV 143 (152)
Q Consensus 98 ~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv 143 (152)
.+.| .+++++|+++..+|..+|++|++|.+++ .++.++.+|...-
T Consensus 4 ei~~-~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d 49 (76)
T cd04927 4 KLFC-SDRKGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITD 49 (76)
T ss_pred EEEE-CCCCCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeC
Confidence 3444 4789999999999999999999999986 8899998888864
No 17
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.10 E-value=0.0039 Score=42.61 Aligned_cols=45 Identities=16% Similarity=0.209 Sum_probs=39.6
Q ss_pred EEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 99 LICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 99 ~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
+.| +.++|+|++|..+|-++|++|.+|.+++.|+++..+|..+-.
T Consensus 6 V~~-~DRpGLL~~i~~~l~~~~l~I~~A~I~T~gera~D~FyV~d~ 50 (75)
T cd04897 6 VQC-RDRPKLLFDVVCTLTDMDYVVFHATIDTDGDDAHQEYYIRHK 50 (75)
T ss_pred EEe-CCcCcHHHHHHHHHHhCCeEEEEEEEeecCceEEEEEEEEcC
Confidence 344 578999999999999999999999999999998888877653
No 18
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.05 E-value=0.0056 Score=40.65 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=39.0
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.+.+.+ .+++++|++|..+|.++|++|+++.+.+.++.++.+|+.+-
T Consensus 3 ri~V~~-~D~~Gll~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~ 49 (72)
T cd04926 3 RLELRT-EDRVGLLSDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTD 49 (72)
T ss_pred EEEEEE-CCccCHHHHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEEC
Confidence 455544 46889999999999999999999999888888778777754
No 19
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=97.01 E-value=0.0049 Score=42.11 Aligned_cols=46 Identities=9% Similarity=0.042 Sum_probs=39.2
Q ss_pred EEecCCCcchHHHHHHHHHHCCcEEEEEEEE--eeCCeEEEEEEEEEcc
Q 045349 99 LICGLNRNFMFHEIISILEEEAAEVINVTRF--NSGDRVIFSVQSKVYI 145 (152)
Q Consensus 99 ~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s--~~~~~v~~ti~~qv~~ 145 (152)
++| ..++|+|++|.++|.++|++|.+|.++ +.|+++..+|.....+
T Consensus 5 v~a-~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g 52 (75)
T cd04896 5 IRC-VDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDG 52 (75)
T ss_pred EEe-CCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCC
Confidence 344 478999999999999999999999999 9999988877774333
No 20
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.96 E-value=0.0069 Score=40.47 Aligned_cols=43 Identities=14% Similarity=0.325 Sum_probs=38.2
Q ss_pred ecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 101 CGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 101 ~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.+.+++++|++|..+|..+|++|++|.+++.++.++.+|.+.-
T Consensus 6 ~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d 48 (74)
T cd04925 6 TGTDRPGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRD 48 (74)
T ss_pred EECCCCCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEc
Confidence 3457899999999999999999999999999999888887763
No 21
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.65 E-value=0.016 Score=38.85 Aligned_cols=47 Identities=9% Similarity=0.148 Sum_probs=38.6
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv 143 (152)
+|.+.| +.++++|.++..+|..+||+|++|.+.+ .++.++.+|.+.-
T Consensus 3 eI~V~~-~Dr~gLFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d 50 (68)
T cd04928 3 EITFAA-GDKPKLLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTG 50 (68)
T ss_pred EEEEEE-CCCcchHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEec
Confidence 565655 4789999999999999999999999865 4677888877764
No 22
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=96.52 E-value=0.0015 Score=50.52 Aligned_cols=54 Identities=30% Similarity=0.387 Sum_probs=48.4
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
.++.-||..||+|-.-+|+.|..||..+|.. .|.|+...|.-|.-||..|-+-+
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptlPsdklSkiqtLklA~ryidfl~~vl 132 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTLPSDKLSKIQTLKLAARYIDFLYQVL 132 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCCCccccccccchhhcccCCchhhhcc
Confidence 3578899999999999999999999999977 89999999999999999886543
No 23
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=96.50 E-value=0.026 Score=36.26 Aligned_cols=42 Identities=14% Similarity=0.150 Sum_probs=37.3
Q ss_pred cCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 102 GLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 102 ~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
..+++++|.+|..+|.+++++|.++.+.+.++.++.+|+++.
T Consensus 7 ~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~ 48 (70)
T cd04899 7 ALDRPGLLADVTRVLAELGLNIHSAKIATLGERAEDVFYVTD 48 (70)
T ss_pred EcCCccHHHHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEEC
Confidence 347789999999999999999999999998888888888775
No 24
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=95.80 E-value=0.16 Score=48.84 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=48.6
Q ss_pred CCceEEEEEeCC--eeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 82 EPSVMNITTSGS--TLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 82 ~~p~V~v~~~g~--~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
..|.|.+....+ ...|.+ +..+++|+|++|..+|..+|++|++|.+++.|+.+..+|.+.-
T Consensus 800 ~~~~V~i~~~~~~~~T~i~V-~a~DrpGLLa~I~~~L~~~~l~I~~AkI~T~g~~v~D~F~V~d 862 (895)
T PRK00275 800 FPTQVTISNDAQRPVTVLEI-IAPDRPGLLARIGRIFLEFDLSLQNAKIATLGERVEDVFFITD 862 (895)
T ss_pred CCCEEEEEECCCCCeEEEEE-EECCCCCHHHHHHHHHHHCCCEEEEeEEEecCCEEEEEEEEEC
Confidence 456777776443 233444 4457899999999999999999999999999999998888865
No 25
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription]
Probab=95.69 E-value=0.016 Score=48.11 Aligned_cols=56 Identities=27% Similarity=0.310 Sum_probs=49.4
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 045349 10 GSSSRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 10 ~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
.+..+..-|..||+|=..+|..|..||-.+|.. .|.++-..|.-|-.||--|-..+
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~~~d~~LSkyetLqmaq~yi~~l~~~l 229 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDGDSDKKLSKYETLQMAQGYILALGCLL 229 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCCCccchhhhhhHHHHHHHHHhhhHHhh
Confidence 345567778999999999999999999999988 78999999999999999887665
No 26
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD. This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t
Probab=95.61 E-value=0.14 Score=32.42 Aligned_cols=46 Identities=13% Similarity=0.200 Sum_probs=36.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
+.+.| .++++.|.++..+|.++|+.|.++.+.+.++.....|++.-
T Consensus 3 l~i~~-~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~~~v~~ 48 (70)
T cd04873 3 VEVYA-PDRPGLLADITRVLADLGLNIHDARISTTGERALDVFYVTD 48 (70)
T ss_pred EEEEe-CCCCCHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEEEC
Confidence 44444 46789999999999999999999999887776666666554
No 27
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription]
Probab=95.41 E-value=0.0084 Score=49.61 Aligned_cols=53 Identities=30% Similarity=0.382 Sum_probs=46.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHH
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
.|..-|..||+|=-.+|+.|..||.++|.. .|++|..+|.-|-+||..|++-.
T Consensus 72 rR~kaNaRER~RMH~LNdAld~LReviP~~~~~~klskIetl~~a~~yi~als~~~ 127 (254)
T KOG3898|consen 72 RRLKANARERTRMHDLNDALDALREVIPHGLHPPKLSKIETLRLAANYIAALSEVL 127 (254)
T ss_pred hcccccchhhccccchhHHHHHhHhhccCcCCCCCCCcchhHHhhhcchhhhcccc
Confidence 345557899999999999999999999944 79999999999999999998654
No 28
>PRK05007 PII uridylyl-transferase; Provisional
Probab=95.07 E-value=0.1 Score=49.99 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=46.0
Q ss_pred CceEEEEEeCCe--eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTSGST--LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g~~--~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+....+. -.+.+++ .+++|+|++|.++|.++|++|.+|-++|.|+++..+|.++-
T Consensus 795 ~~~V~~d~~~s~~~TvlEV~a-~DRpGLL~~I~~~l~~~~l~I~~AkI~T~gera~DvFyV~~ 856 (884)
T PRK05007 795 PTEVSFLPTHTDRRSYMELIA-LDQPGLLARVGKIFADLGISLHGARITTIGERVEDLFILAT 856 (884)
T ss_pred CCEEEEccCCCCCeEEEEEEe-CCchHHHHHHHHHHHHCCcEEEEEEEeccCceEEEEEEEEc
Confidence 456766644332 1233344 57899999999999999999999999999999888777754
No 29
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.
Probab=94.96 E-value=0.21 Score=33.27 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=36.9
Q ss_pred ecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 101 CGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 101 ~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
.|.+++|.++.+..+|.++|.++++++.++.++.+...+.+...
T Consensus 8 ~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~ 51 (76)
T PF13740_consen 8 VGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP 51 (76)
T ss_dssp EEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES
T ss_pred EecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC
Confidence 45688999999999999999999999999999998887777765
No 30
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....
Probab=94.95 E-value=0.28 Score=30.57 Aligned_cols=36 Identities=17% Similarity=0.353 Sum_probs=31.0
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
|.+.|. +++|.|.++..+|.++|++|.++...+.++
T Consensus 3 v~v~~~-drpG~l~~v~~~la~~~inI~~~~~~~~~~ 38 (66)
T PF01842_consen 3 VRVIVP-DRPGILADVTEILADHGINIDSISQSSDKD 38 (66)
T ss_dssp EEEEEE-TSTTHHHHHHHHHHHTTEEEEEEEEEEESS
T ss_pred EEEEcC-CCCCHHHHHHHHHHHcCCCHHHeEEEecCC
Confidence 444554 789999999999999999999999988876
No 31
>PRK04374 PII uridylyl-transferase; Provisional
Probab=94.92 E-value=0.18 Score=48.41 Aligned_cols=62 Identities=13% Similarity=0.137 Sum_probs=48.4
Q ss_pred CCceEEEEEeCC--eeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 82 EPSVMNITTSGS--TLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 82 ~~p~V~v~~~g~--~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
..|.|.+....+ ...|.+++ ..++|+|++|..+|.++|++|++|.++|.++++..+|.++-.
T Consensus 782 ~~~~V~~~~~~~~~~t~leI~a-~DrpGLLa~Ia~~l~~~~l~I~~AkI~T~g~~a~D~F~V~d~ 845 (869)
T PRK04374 782 FAPRVEFSESAGGRRTRISLVA-PDRPGLLADVAHVLRMQHLRVHDARIATFGERAEDQFQITDE 845 (869)
T ss_pred CCCeEEEeecCCCCeEEEEEEe-CCcCcHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEECC
Confidence 346677765443 22344444 578999999999999999999999999999999988888753
No 32
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A.
Probab=94.82 E-value=0.32 Score=32.26 Aligned_cols=43 Identities=12% Similarity=0.195 Sum_probs=34.8
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee--CCeEEEEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS--GDRVIFSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~--~~~v~~ti~~qv~~ 145 (152)
.+++|+|.+|..++.+.|+.|.+.++... ++....+|.+++.+
T Consensus 14 ~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d 58 (80)
T PF13291_consen 14 EDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKD 58 (80)
T ss_dssp E--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESS
T ss_pred EcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECC
Confidence 46789999999999999999999999884 56777888888754
No 33
>KOG3910 consensus Helix loop helix transcription factor [Transcription]
Probab=94.57 E-value=0.035 Score=50.13 Aligned_cols=56 Identities=20% Similarity=0.239 Sum_probs=47.0
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHH
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESL 68 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L 68 (152)
+|+..|+.||-|-..+|+.|..|-...-.. +...|--||..|+.-|-.|+++|.+-
T Consensus 526 RR~aNNARERlRVRDINeAfKELGRMCqlHlkSeKpQTKLgILhqAVsVIlsLEQQVRER 585 (632)
T KOG3910|consen 526 RRMANNARERLRVRDINEAFKELGRMCQLHLKSEKPQTKLGILHQAVSVILSLEQQVRER 585 (632)
T ss_pred HHhhhhhhhheehhhHHHHHHHHHHHHHHhhcccCcchhhhHHHHHHHHHHHHHHHHHHc
Confidence 467788999999999999999998765322 56678889999999999999999764
No 34
>PRK05092 PII uridylyl-transferase; Provisional
Probab=94.51 E-value=0.25 Score=47.58 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=47.5
Q ss_pred CceEEEEEeCC--eeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTSGS--TLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g~--~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+....+ ...|.+.+ .+++|+|++|..+|.++|++|.+|.+.+.++++..+|.+..
T Consensus 830 ~~~V~~~~~~s~~~t~i~I~~-~DrpGLl~~I~~~l~~~gl~I~~A~I~T~~~~~~D~F~v~d 891 (931)
T PRK05092 830 PPRVTIDNEASNRFTVIEVNG-RDRPGLLYDLTRALSDLNLNIASAHIATYGERAVDVFYVTD 891 (931)
T ss_pred CCEEEEeeCCCCCeEEEEEEE-CCcCcHHHHHHHHHHHCCceEEEEEEEEcCCEEEEEEEEeC
Confidence 46677765443 23344444 57899999999999999999999999999999988888865
No 35
>PRK03059 PII uridylyl-transferase; Provisional
Probab=94.37 E-value=0.28 Score=46.90 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=45.6
Q ss_pred CceEEEEEeC--CeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEE
Q 045349 83 PSVMNITTSG--STLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQS 141 (152)
Q Consensus 83 ~p~V~v~~~g--~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~ 141 (152)
.|.|.+.... ....|.+++ .+++|+|++|..+|..+|++|++|.+++.|+.+..+|.+
T Consensus 773 ~~~V~~~~~~~~~~T~i~V~a-~DrpGLLa~Ia~~L~~~~l~I~~AkI~T~~~~v~DvF~V 832 (856)
T PRK03059 773 TPRVDLRPDERGQYYILSVSA-NDRPGLLYAIARVLAEHRVSVHTAKINTLGERVEDTFLI 832 (856)
T ss_pred CceEEEEEcCCCCEEEEEEEe-CCcchHHHHHHHHHHHCCCeEEEEEEeecCCEEEEEEEE
Confidence 4456665533 233454444 578999999999999999999999999999999888877
No 36
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=94.34 E-value=1.4 Score=41.92 Aligned_cols=61 Identities=10% Similarity=0.036 Sum_probs=46.4
Q ss_pred CceEEEEEe--CCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE-eeCCeEEEEEEEEEc
Q 045349 83 PSVMNITTS--GSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRF-NSGDRVIFSVQSKVY 144 (152)
Q Consensus 83 ~p~V~v~~~--g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s-~~~~~v~~ti~~qv~ 144 (152)
.|.|.+... ....+|.+++ .+++++|++|..+|..+|++|++|.++ +.++.++.+|.++-.
T Consensus 655 ~~~v~~~~~~~~~~t~i~V~~-~DrpgLla~i~~~L~~~~l~I~~A~I~tt~~g~~lD~F~V~~~ 718 (850)
T TIGR01693 655 GPLALIDGTRPSGGTEVFIYA-PDQPGLFAKVAGALAMLSLSVHDAQVNTTKDGVALDTFVVQDL 718 (850)
T ss_pred CCEEEEeccCCCCeEEEEEEe-CCCCcHHHHHHHHHHHCCCeEEEEEEEEecCCEEEEEEEEECC
Confidence 455555432 2344565555 478999999999999999999999998 778888888887753
No 37
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.29 E-value=0.31 Score=46.07 Aligned_cols=60 Identities=13% Similarity=0.077 Sum_probs=46.8
Q ss_pred CceEEEEEeCC--eeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTSGS--TLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g~--~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+....+ ...|.+. ...++|+|++|-.+|.++|++|++|.+++.++.+..+|.++-
T Consensus 694 ~~~v~~~~~~~~~~t~i~V~-a~DrpGLla~Ia~~L~~~~lnI~~AkI~T~g~~a~D~F~V~d 755 (774)
T PRK03381 694 PPRVLWLDGASPDATVLEVR-AADRPGLLARLARALERAGVDVRWARVATLGADVVDVFYVTG 755 (774)
T ss_pred CcEEEEEECCCCCeEEEEEE-eCCchhHHHHHHHHHHHCCCeEEEEEEeecCCeEEEEEEEEC
Confidence 44566655433 2344444 457899999999999999999999999999999988888764
No 38
>PRK03381 PII uridylyl-transferase; Provisional
Probab=94.17 E-value=0.37 Score=45.64 Aligned_cols=60 Identities=10% Similarity=0.125 Sum_probs=46.9
Q ss_pred CceEEEEEe-CCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTS-GSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~-g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+... .+..+|.++| .+++++|++|..+|..+|++|++|++.+.++.++.+|.+.-
T Consensus 587 ~~~v~~~~~~~~~~~V~V~~-~DrpGLfa~i~~vL~~~glnI~dA~i~t~dg~~ld~F~V~~ 647 (774)
T PRK03381 587 GVHVEIAPADPHMVEVTVVA-PDRRGLLSKAAGVLALHRLRVRSASVRSHDGVAVLEFVVSP 647 (774)
T ss_pred CCEEEEeeCCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEeEEEecCCEEEEEEEEEC
Confidence 455655433 3555676655 47899999999999999999999999987888888777764
No 39
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.79 E-value=0.28 Score=46.93 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=45.8
Q ss_pred CceEEEEEeCCe--eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTSGST--LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g~~--~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+....+. -.+.+++ .+++|+|++|..+|.++|++|.+|-++|.++++..+|.+.-
T Consensus 770 ~~~V~~dn~~s~~~T~iev~a-~DrpGLL~~I~~~l~~~~l~i~~AkI~T~gerv~D~Fyv~~ 831 (854)
T PRK01759 770 KTEVRFLNEEKQEQTEMELFA-LDRAGLLAQVSQVFSELNLNLLNAKITTIGEKAEDFFILTN 831 (854)
T ss_pred CCEEEEccCCCCCeEEEEEEe-CCchHHHHHHHHHHHHCCCEEEEEEEcccCceEEEEEEEEC
Confidence 456666554332 1233343 57899999999999999999999999999999887777754
No 40
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int
Probab=93.65 E-value=0.54 Score=31.42 Aligned_cols=47 Identities=9% Similarity=0.173 Sum_probs=39.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
+.+.| +.++|.+.+|-..|.++|.+|++++....++.++..+.+.+.
T Consensus 4 ltv~g-~Dr~GiVa~vs~~la~~g~nI~d~~q~~~~~~F~m~~~~~~~ 50 (77)
T cd04893 4 ISALG-TDRPGILNELTRAVSESGCNILDSRMAILGTEFALTMLVEGS 50 (77)
T ss_pred EEEEe-CCCChHHHHHHHHHHHcCCCEEEceeeEEcCEEEEEEEEEec
Confidence 33444 578999999999999999999999999988888887777654
No 41
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=93.07 E-value=0.75 Score=44.05 Aligned_cols=60 Identities=12% Similarity=0.195 Sum_probs=46.7
Q ss_pred CceEEEEEeC--CeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEE
Q 045349 83 PSVMNITTSG--STLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g--~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv 143 (152)
.|.|.+.... ...+|.++| ..++|+|++|..+|..+|++|++|.+.+ .++.++.+|.+.-
T Consensus 664 ~~~V~i~~~~~~~~t~V~V~~-~DrpGLfa~Ia~~L~~~~L~I~~A~I~T~~~g~alD~F~V~d 726 (854)
T PRK01759 664 DLLVKISNRFSRGGTEIFIYC-QDQANLFLKVVSTIGAKKLSIHDAQIITSQDGYVLDSFIVTE 726 (854)
T ss_pred CCEEEEEecCCCCeEEEEEEe-cCCccHHHHHHHHHHHCCCeEEEEEEEEccCCEEEEEEEEeC
Confidence 4566665433 344565655 4789999999999999999999999876 7889888888764
No 42
>PRK00275 glnD PII uridylyl-transferase; Provisional
Probab=92.83 E-value=0.74 Score=44.33 Aligned_cols=50 Identities=4% Similarity=0.042 Sum_probs=41.1
Q ss_pred CeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEE-EeeCCeEEEEEEEEE
Q 045349 93 STLEVNLICGLNRNFMFHEIISILEEEAAEVINVTR-FNSGDRVIFSVQSKV 143 (152)
Q Consensus 93 ~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~-s~~~~~v~~ti~~qv 143 (152)
+..+|.+.|. +++++|+++..+|..+|++|++|.+ ++.+|.++-+|.+.-
T Consensus 703 ~~t~V~V~~~-DrpgLFa~i~g~L~~~~lnI~~A~I~Tt~dg~alD~F~V~d 753 (895)
T PRK00275 703 GGTQIFIYAP-DQHDFFAATVAAMDQLNLNIHDARIITSSSQFTLDTYIVLD 753 (895)
T ss_pred CeEEEEEEeC-CCCcHHHHHHHHHHHCCCeEEEEEEEEcCCCeEEEEEEEeC
Confidence 4567777664 7899999999999999999999997 455677888887764
No 43
>PRK05007 PII uridylyl-transferase; Provisional
Probab=92.64 E-value=0.89 Score=43.72 Aligned_cols=60 Identities=12% Similarity=0.187 Sum_probs=45.3
Q ss_pred CceEEEEEeC--CeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC-CeEEEEEEEEE
Q 045349 83 PSVMNITTSG--STLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG-DRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g--~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~-~~v~~ti~~qv 143 (152)
.|.|.+.... ...+|.++| ..++++|++|..+|..+|++|++|.+.+.+ +.++.+|.+.-
T Consensus 688 ~p~V~i~~~~~~~~t~V~V~a-~DrpGLfa~Ia~~La~~~L~I~~A~I~T~~dg~alD~F~V~d 750 (884)
T PRK05007 688 KPLVLLSKQATRGGTEIFIWS-PDRPYLFAAVCAELDRRNLSVHDAQIFTSRDGMAMDTFIVLE 750 (884)
T ss_pred CCeEEEEecCCCCeEEEEEEe-cCCcCHHHHHHHHHHHCCCEEEEEEEEEcCCCeEEEEEEEEC
Confidence 4566665533 455666655 578999999999999999999999987655 48877777654
No 44
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.54 E-value=1.2 Score=27.80 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=32.1
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee-----CCeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS-----GDRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~-----~~~v~~ti~~qv~ 144 (152)
.+++|.|.+|++.|.+.|++|.+.++... ++.....|.+.+.
T Consensus 6 ~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~ 52 (73)
T cd04886 6 PDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETR 52 (73)
T ss_pred CCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeC
Confidence 46789999999999999999999887664 2445555555553
No 45
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.48 E-value=0.4 Score=45.80 Aligned_cols=62 Identities=15% Similarity=0.125 Sum_probs=46.5
Q ss_pred CCceEEEEEeCCe-eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 82 EPSVMNITTSGST-LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 82 ~~p~V~v~~~g~~-~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
..|.|.+....+. ..+.-+....++|+|..+-.+|.+++|++.+|.++++|.++..+|....
T Consensus 777 i~p~v~i~~t~~~~~t~lEv~alDRpGLLa~v~~v~~dl~l~i~~AkItT~GErveD~F~vt~ 839 (867)
T COG2844 777 IPPRVTILPTASNDKTVLEVRALDRPGLLAALAGVFADLGLSLHSAKITTFGERVEDVFIVTD 839 (867)
T ss_pred cCCceeeccccCCCceEEEEEeCCcccHHHHHHHHHHhcccceeeeeeccccccceeEEEEec
Confidence 3577777654322 2222233467899999999999999999999999999999876666554
No 46
>PRK03059 PII uridylyl-transferase; Provisional
Probab=92.44 E-value=0.64 Score=44.53 Aligned_cols=60 Identities=12% Similarity=0.172 Sum_probs=46.1
Q ss_pred CceEEEEEe--CCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE-eeCCeEEEEEEEEE
Q 045349 83 PSVMNITTS--GSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRF-NSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~--g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s-~~~~~v~~ti~~qv 143 (152)
.|-|-++.. .+..+|.+.|. +++++|+++..+|..+|++|++|.+. +.+|.++.+|.+.-
T Consensus 665 ~~~v~~~~~~~~~~~~v~i~~~-d~~gLFa~i~g~l~~~~l~I~~A~i~t~~~g~~ld~f~V~~ 727 (856)
T PRK03059 665 TPIVRARLSPAGEGLQVMVYTP-DQPDLFARICGYFDRAGFSILDARVHTTRHGYALDTFQVLD 727 (856)
T ss_pred CCeEEEEecCCCCeEEEEEEec-CCCcHHHHHHHHHHHCCCceeeeEEEEcCCCeEEEEEEEeC
Confidence 344445443 34567877664 78999999999999999999999984 56778888888764
No 47
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase. This model describes GlnD, the uridylyltransferase/uridylyl-removing enzyme for the nitrogen regulatory protein PII. Not all homologs of PII share the property of uridylyltransferase modification on the characteristic Tyr residue (see Prosite pattern PS00496 and document PDOC00439), but the modification site is preserved in the PII homolog of all species with a member of this family.
Probab=92.42 E-value=0.64 Score=44.25 Aligned_cols=60 Identities=15% Similarity=0.128 Sum_probs=45.9
Q ss_pred CceEEEEEeCCe--eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 83 PSVMNITTSGST--LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g~~--~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.|.|.+....+. -.|.+ .+..++|+|++|.++|.++|++|.++.+++.++++..+|.++.
T Consensus 766 ~~~V~~d~~~s~~~t~~~v-~~~DrpGll~~i~~~l~~~~~~i~~a~i~t~~~~~~d~F~v~~ 827 (850)
T TIGR01693 766 PPRVTILNTASRKATIMEV-RALDRPGLLARVGRTLEELGLSIQSAKITTFGEKAEDVFYVTD 827 (850)
T ss_pred CCeEEEccCCCCCeEEEEE-EECCccHHHHHHHHHHHHCCCeEEEEEEEecCccceeEEEEEC
Confidence 456666654432 22333 4457899999999999999999999999999998877777764
No 48
>PRK05092 PII uridylyl-transferase; Provisional
Probab=92.30 E-value=1.1 Score=43.15 Aligned_cols=60 Identities=13% Similarity=0.256 Sum_probs=46.1
Q ss_pred CceEEEEEeC--CeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEE
Q 045349 83 PSVMNITTSG--STLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKV 143 (152)
Q Consensus 83 ~p~V~v~~~g--~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv 143 (152)
.|.|.++... +..+|.++|. .++++|.+|..+|..+|++|++|.+.+ .++.++.+|.++-
T Consensus 719 ~~~v~~~~~~~~~~t~v~I~~~-Dr~GLfa~i~~~L~~~glnI~~A~I~t~~dg~alD~F~V~~ 781 (931)
T PRK05092 719 PLATEVRPDPARGVTEVTVLAA-DHPGLFSRIAGACAAAGANIVDARIFTTTDGRALDTFWIQD 781 (931)
T ss_pred CcEEEEEecCCCCeEEEEEEeC-CCCcHHHHHHHHHHHCCCcEEEEEEEEecCCeEEEEEEEEC
Confidence 3566665543 4567777664 789999999999999999999999876 5777777777654
No 49
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains. The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=92.19 E-value=1.6 Score=28.02 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=33.9
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC-CeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG-DRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~-~~v~~ti~~qv~ 144 (152)
.+++|.|.+|..++.+.|.+|.+.+..... +.....|.+++.
T Consensus 7 ~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~~~~~~~~~~vev~ 49 (74)
T cd04887 7 PNRPGMLGRVTTAIGEAGGDIGAIDLVEQGRDYTVRDITVDAP 49 (74)
T ss_pred CCCCchHHHHHHHHHHcCCcEEEEEEEEecCCEEEEEEEEEcC
Confidence 367899999999999999999999987764 555566666664
No 50
>PRK04374 PII uridylyl-transferase; Provisional
Probab=91.87 E-value=1.4 Score=42.36 Aligned_cols=51 Identities=16% Similarity=0.245 Sum_probs=42.3
Q ss_pred CCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEE
Q 045349 92 GSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKV 143 (152)
Q Consensus 92 g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv 143 (152)
.+..+|.+.|. +++++|++|..+|..+|++|++|.+.+ .+|.++.+|.+.-
T Consensus 688 ~~~~~v~v~~~-d~~gLFa~i~g~l~~~~lnI~~A~i~t~~~g~~ld~f~V~~ 739 (869)
T PRK04374 688 NDALEVFVYSP-DRDGLFAAIVATLDRKGYGIHRARVLDAPHDAIFDVFEVLP 739 (869)
T ss_pred CCeEEEEEEeC-CCccHHHHHHHHHHHCCCeEEEEEEEEcCCCEEEEEEEEeC
Confidence 35567877664 789999999999999999999999876 5778888888754
No 51
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription]
Probab=91.37 E-value=0.24 Score=44.12 Aligned_cols=43 Identities=28% Similarity=0.295 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHH
Q 045349 19 INEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHL 61 (152)
Q Consensus 19 ~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L 61 (152)
-+-|.||++=|.-|+.|..++|-. +-.||++++.-|..|||.-
T Consensus 7 naA~tRRekEN~EF~eLAklLPLa~AItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 7 NAARTRREKENYEFYELAKLLPLASAITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred hHHHHHHHhhcchHHHHHhhccchhhhhhccchhhhhhHHHHHHHHH
Confidence 344999999999999999999977 6799999999999999864
No 52
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=91.21 E-value=1.3 Score=29.02 Aligned_cols=34 Identities=12% Similarity=0.239 Sum_probs=29.4
Q ss_pred EEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 98 NLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 98 ~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
.+.| ..++|++.+|-+.|.++|++|.+.+..+.+
T Consensus 3 ~v~g-~D~~Giv~~it~~l~~~~~nI~~~~~~~~~ 36 (81)
T cd04869 3 EVVG-NDRPGIVHEVTQFLAQRNINIEDLSTETYS 36 (81)
T ss_pred EEEe-CCCCCHHHHHHHHHHHcCCCeEEeEeeeec
Confidence 3444 578999999999999999999999998876
No 53
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein. This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.83 E-value=0.8 Score=31.09 Aligned_cols=47 Identities=6% Similarity=0.123 Sum_probs=37.6
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
|.+.| .+++|.+++|.+.|-++|+++++.+..+.++.++..+.+...
T Consensus 4 l~i~g-~D~pGiva~vt~~la~~g~nI~~~~~~~~~~~f~~~~~v~~~ 50 (88)
T cd04872 4 ITVVG-KDRVGIVAGVSTKLAELNVNILDISQTIMDGYFTMIMIVDIS 50 (88)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCEEechhHhhCCccEEEEEEEeC
Confidence 44444 578999999999999999999999988877776666666543
No 54
>PRK00194 hypothetical protein; Validated
Probab=90.67 E-value=0.85 Score=30.93 Aligned_cols=47 Identities=6% Similarity=0.160 Sum_probs=37.1
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
+.+.| .+++|.+.++...|.++|++|++.+..+.++.++..+.+...
T Consensus 6 ltv~g-~DrpGiva~vt~~la~~g~nI~~~~~~~~~~~~~~~~~v~~~ 52 (90)
T PRK00194 6 ITVIG-KDKVGIIAGVSTVLAELNVNILDISQTIMDGYFTMIMLVDIS 52 (90)
T ss_pred EEEEc-CCCCCHHHHHHHHHHHcCCCEEehhhHhhCCeeEEEEEEEec
Confidence 44444 578999999999999999999999988877766665555553
No 55
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase). This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.47 E-value=1.5 Score=28.60 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=32.0
Q ss_pred ecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 101 CGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 101 ~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
.+..++|.+.+|-+.|.++|+++++.+..+..+.-.+.+.+++.
T Consensus 5 ~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~ 48 (74)
T cd04875 5 SCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFE 48 (74)
T ss_pred EcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEE
Confidence 34578999999999999999999999987532222244444443
No 56
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.38 E-value=1.4 Score=28.93 Aligned_cols=42 Identities=12% Similarity=0.247 Sum_probs=34.0
Q ss_pred EecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEE
Q 045349 100 ICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQS 141 (152)
Q Consensus 100 ~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~ 141 (152)
+.|..++|.+.++-++|.++|+++.+.+.+..++.+...+.+
T Consensus 4 v~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v 45 (75)
T cd04870 4 VTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILV 45 (75)
T ss_pred EEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEE
Confidence 346788999999999999999999999988888764443333
No 57
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=90.06 E-value=2.8 Score=26.08 Aligned_cols=35 Identities=9% Similarity=0.319 Sum_probs=27.9
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
+.+.+ .+++|.|.+++..|.+++++|.+.+....+
T Consensus 3 l~i~~-~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~ 37 (72)
T cd04874 3 LSIIA-EDKPGVLRDLTGVIAEHGGNITYTQQFIER 37 (72)
T ss_pred EEEEe-CCCCChHHHHHHHHHhCCCCEEEEEEeccC
Confidence 34444 367899999999999999999998876653
No 58
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein. ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence
Probab=89.90 E-value=2 Score=28.08 Aligned_cols=41 Identities=15% Similarity=0.323 Sum_probs=30.8
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
+.+.+ .+++|+|.+|+.++.++++.+.+.++.+. +.+.+++
T Consensus 3 l~I~~-~dr~Gll~dI~~~i~~~~~nI~~~~~~~~-~~i~l~i 43 (74)
T cd04877 3 LEITC-EDRLGITQEVLDLLVEHNIDLRGIEIDPK-GRIYLNF 43 (74)
T ss_pred EEEEE-EccchHHHHHHHHHHHCCCceEEEEEecC-CeEEEEe
Confidence 33444 36789999999999999999999998775 4433433
No 59
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=89.74 E-value=2.4 Score=27.59 Aligned_cols=43 Identities=7% Similarity=0.017 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCC-eEEEEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGD-RVIFSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~-~v~~ti~~qv~~ 145 (152)
.+++|.|.++++.|.++|+.+++..+.+..+ .--|.|...+.+
T Consensus 7 ~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~ 50 (75)
T cd04880 7 KNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEG 50 (75)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEEC
Confidence 3578999999999999999999998888765 344665555543
No 60
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=89.31 E-value=2.8 Score=26.87 Aligned_cols=42 Identities=7% Similarity=0.177 Sum_probs=31.5
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEee-CCeEEEEEEEEEcc
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNS-GDRVIFSVQSKVYI 145 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~-~~~v~~ti~~qv~~ 145 (152)
++++.+.+|+..|.++|++|...+.+.. ++.....|.+.+..
T Consensus 9 d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~ 51 (76)
T cd04888 9 HRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTST 51 (76)
T ss_pred CCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCc
Confidence 5689999999999999999999987653 34444555555543
No 61
>PRK04435 hypothetical protein; Provisional
Probab=88.44 E-value=3.1 Score=31.46 Aligned_cols=55 Identities=9% Similarity=0.265 Sum_probs=40.8
Q ss_pred eCCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe-eCCeEEEEEEEEEccc
Q 045349 91 SGSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN-SGDRVIFSVQSKVYIT 146 (152)
Q Consensus 91 ~g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~-~~~~v~~ti~~qv~~s 146 (152)
.|..+.+.+.+. +++|.|.+|+..|.+.|++|.+.+.+. .++....+|.+.+...
T Consensus 66 ~~r~vtL~i~l~-Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~ 121 (147)
T PRK04435 66 KGKIITLSLLLE-DRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSM 121 (147)
T ss_pred CCcEEEEEEEEe-cCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCCh
Confidence 555555666553 568999999999999999999988654 3566667777776544
No 62
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription]
Probab=87.34 E-value=0.61 Score=43.79 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHH
Q 045349 20 NEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMH 60 (152)
Q Consensus 20 ~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~ 60 (152)
+=|.||.+=|+-|+.|.-+||.. +-+||++|+.-||.|++-
T Consensus 53 AARsRRsKEn~~FyeLa~~lPlp~aisshLDkaSimRLtISyLRl 97 (768)
T KOG3558|consen 53 AARSRRSKENEEFYELAKLLPLPAAISSHLDKASIMRLTISYLRL 97 (768)
T ss_pred hhhhhcccchHHHHHHHHhCCCcchhhhhhhhHHHHHHHHHHHHH
Confidence 45889999999999999999966 689999999999999873
No 63
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains. Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=87.29 E-value=2.5 Score=26.11 Aligned_cols=40 Identities=20% Similarity=0.333 Sum_probs=29.7
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
.+++|.|.++++.|.++|++|.+...+... +...+.|..+
T Consensus 7 ~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve 48 (65)
T cd04882 7 PDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE 48 (65)
T ss_pred CCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC
Confidence 367899999999999999999877765543 4444544443
No 64
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription]
Probab=87.04 E-value=0.67 Score=42.61 Aligned_cols=38 Identities=34% Similarity=0.436 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHH
Q 045349 22 KHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIM 59 (152)
Q Consensus 22 R~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk 59 (152)
++-|+++|.-+..|.||||.. +|.||-++|.-++.|++
T Consensus 34 KRHRdRLNaELD~lAsLLPfpqdiisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 34 KRHRDRLNAELDHLASLLPFPQDIISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhHHHHhhhHHHHHHHhcCCCHHHHhhhhhhhhhhhhHHHHH
Confidence 456889999999999999977 89999999999999975
No 65
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=86.55 E-value=4.7 Score=24.59 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=31.2
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC-CeEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG-DRVIFSVQSK 142 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~-~~v~~ti~~q 142 (152)
.+++|.|.++.+.|.++|++|.+......+ +..+..|...
T Consensus 6 ~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~ 46 (56)
T cd04889 6 ENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFS 46 (56)
T ss_pred CCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEEC
Confidence 367899999999999999999888876655 5555555443
No 66
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active
Probab=86.35 E-value=4.6 Score=24.74 Aligned_cols=39 Identities=8% Similarity=0.017 Sum_probs=30.8
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQS 141 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~ 141 (152)
.++++.+.+++..|.++|++|.+..+...+ +....++.+
T Consensus 7 ~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v 47 (71)
T cd04879 7 KDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDV 47 (71)
T ss_pred cCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEc
Confidence 356789999999999999999999987754 555555544
No 67
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme. The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi
Probab=85.69 E-value=6.4 Score=26.00 Aligned_cols=43 Identities=7% Similarity=0.030 Sum_probs=33.8
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCC-eEEEEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGD-RVIFSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~-~v~~ti~~qv~~ 145 (152)
.+++|.|.++++.|.++|+++++..+.+..+ .-.|+|.++...
T Consensus 9 ~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~ 52 (80)
T cd04905 9 PNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEG 52 (80)
T ss_pred CCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEEC
Confidence 3578999999999999999999998877643 445666666653
No 68
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=85.40 E-value=0.26 Score=46.22 Aligned_cols=60 Identities=20% Similarity=0.230 Sum_probs=49.4
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN-----SKLSMPQILDDATSYIMHLQKNKESLERK 71 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~ 71 (152)
++.+.|.-+|.+||...+-.|..|.++.-+. .|++.+.-+...+.||..++.+...+.++
T Consensus 650 ~r~it~~Sa~qkrr~n~kl~~~~~Ns~~Sn~~~l~s~k~t~~~~~q~~vhYi~~t~~e~~~v~~e 714 (856)
T KOG3582|consen 650 NRPITHISAEQKRRFNIKLQFDVLNSLSSNSSSLSSIKTTNSNSLQKTVHYINVTQQERVPVQEE 714 (856)
T ss_pred CCcccCccHHHHHHhhHHhhhHhhhhhccCcccccchhhhccccccCceeeeeccchhccccchh
Confidence 4577899999999999999999999988655 57888888999999999887766555544
No 69
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=85.27 E-value=5.9 Score=25.17 Aligned_cols=32 Identities=13% Similarity=0.156 Sum_probs=27.4
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDR 134 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~ 134 (152)
.+++|.|.+++..|.+.|++|.+......++.
T Consensus 9 ~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~ 40 (66)
T cd04908 9 ENKPGRLAAVTEILSEAGINIRALSIADTSEF 40 (66)
T ss_pred cCCCChHHHHHHHHHHCCCCEEEEEEEecCCC
Confidence 36789999999999999999999987766564
No 70
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains. ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i
Probab=84.32 E-value=6.4 Score=23.22 Aligned_cols=40 Identities=15% Similarity=0.302 Sum_probs=30.2
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC-CeEEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG-DRVIFSVQSKV 143 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~-~~v~~ti~~qv 143 (152)
++++.+.++++.|.++++++.+......+ +...+.+...+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 47 (71)
T cd04876 7 DRPGLLADITTVIAEEKINILSVNTRTDDDGLATIRLTLEV 47 (71)
T ss_pred ccCcHHHHHHHHHHhCCCCEEEEEeEECCCCEEEEEEEEEE
Confidence 56789999999999999999999887655 43434444443
No 71
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p
Probab=83.11 E-value=6 Score=21.96 Aligned_cols=29 Identities=21% Similarity=0.454 Sum_probs=25.0
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
++++.+.+++..|..+|+.+...+....+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~ 35 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQRTSG 35 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEeEEcC
Confidence 45788999999999999999999886643
No 72
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.06 E-value=3.9 Score=39.31 Aligned_cols=57 Identities=11% Similarity=0.178 Sum_probs=46.0
Q ss_pred EEEEEeCCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE-eeCCeEEEEEEEEE
Q 045349 86 MNITTSGSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRF-NSGDRVIFSVQSKV 143 (152)
Q Consensus 86 V~v~~~g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s-~~~~~v~~ti~~qv 143 (152)
++++....+.+|++.|. .++.+|+.+..++...|++|++|++. +-+|..+.||.+.-
T Consensus 676 ~~~r~~~~~teV~V~a~-d~p~Lfa~v~~~~~~~g~~i~dAqi~tt~dG~alDtfiv~~ 733 (867)
T COG2844 676 ISVRPHSGGTEVFVYAP-DRPRLFAVVCAALSRRGLSIVDAQIFTTRDGYALDTFIVLE 733 (867)
T ss_pred eeecccCCceEEEEEcC-CCccHHHHHHHHHccCCCceeeeEEEEccCCceeeeEEEec
Confidence 34555666679999885 67899999999999999999999974 45677998887663
No 73
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH). The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden
Probab=82.85 E-value=4.1 Score=25.74 Aligned_cols=42 Identities=12% Similarity=0.175 Sum_probs=32.4
Q ss_pred cCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCeEEEEEEEEE
Q 045349 102 GLNRNFMFHEIISILEEEAAEVINVTRFN--SGDRVIFSVQSKV 143 (152)
Q Consensus 102 ~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~v~~ti~~qv 143 (152)
..+++|.+.++.+.|.++|+++.+..+.. .++...+.|.+..
T Consensus 6 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~ 49 (73)
T cd04902 6 NTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDE 49 (73)
T ss_pred eCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCC
Confidence 34678999999999999999998887655 3466666666543
No 74
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=82.31 E-value=11 Score=24.28 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=25.5
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS 131 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~ 131 (152)
.+++|.|.++++.|.++|++|++......
T Consensus 7 ~d~pG~L~~l~~~i~~~g~nI~~i~~~~~ 35 (72)
T cd04884 7 EDKPGTLKPVVDTLREFNARIISILTAFE 35 (72)
T ss_pred cCCCccHHHHHHHHHHCCCeEEEEEeccc
Confidence 36789999999999999999999987664
No 75
>KOG4447 consensus Transcription factor TWIST [Transcription]
Probab=81.31 E-value=1.4 Score=34.29 Aligned_cols=46 Identities=24% Similarity=0.252 Sum_probs=32.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHH
Q 045349 17 RNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQ 62 (152)
Q Consensus 17 h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~ 62 (152)
+-..||.|-+.+++.|.-|+.|+|.. ++++.--.|.-+..||..|.
T Consensus 26 r~~~e~~R~~~ls~~s~l~g~l~pgspa~gk~~~ktlr~~~~~~~~~d 73 (173)
T KOG4447|consen 26 RQRKERGRKRRLSDASTLLGKLEPGSPADGKRGKKTLRIGTDSIQSLD 73 (173)
T ss_pred hhHHHHhHHhhhhhhhhhccccCCCCCCcccccccccccCCCchhhHH
Confidence 33469999999999999999999977 33333233555556665553
No 76
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe; TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines; and TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxy
Probab=81.10 E-value=6.6 Score=25.86 Aligned_cols=42 Identities=7% Similarity=0.005 Sum_probs=33.1
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeE-EEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRV-IFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v-~~ti~~qv~ 144 (152)
.+++|.|+++|..+...|+++.+..+-+..+.. -|.|...+.
T Consensus 8 ~~~pG~L~~vL~~f~~~~iNlt~IeSRP~~~~~~~y~Ffvd~~ 50 (74)
T cd04904 8 KEEVGALARALKLFEEFGVNLTHIESRPSRRNGSEYEFFVDCE 50 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEECCCCCCCCceEEEEEEEE
Confidence 457899999999999999999999998876543 355555554
No 77
>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am
Probab=79.21 E-value=10 Score=22.10 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
.++.+.+++++|.+.++.|...+.+..+..+.+++.
T Consensus 13 ~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~ 48 (60)
T cd04868 13 TPGVAAKIFSALAEAGINVDMISQSESEVNISFTVD 48 (60)
T ss_pred CCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEe
Confidence 457889999999999999987776553344444443
No 78
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=78.39 E-value=3 Score=32.08 Aligned_cols=37 Identities=14% Similarity=0.187 Sum_probs=29.7
Q ss_pred CCCCCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCC
Q 045349 4 ANSSAAGSSSRAQRNINEKHRRMLMKDLISQLASLIP 40 (152)
Q Consensus 4 ~~~~~~~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP 40 (152)
+|+-...-..|+..+..||+||---...|..||..=-
T Consensus 2 ~~~r~pt~kErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 2 SGGRRPTWKERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred CCcccccHhhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4444556667888889999999999999999998753
No 79
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH). PAH catalyzes the hydroxylation of L-Phe to L-Tyr, the first step in the catabolic degradation of L-Phe. In PAH, an autoregulatory sequence, N-terminal of the ACT domain, extends across the catalytic domain active site and regulates the enzyme by intrasteric regulation. It appears that the activation by L-Phe induces a conformational change that converts the enzyme to a high-affinity and high-activity state. Modulation of activity is achieved through inhibition by BH4 and activation by phosphorylation of serine residues of the autoregulatory region. The molecular basis for the cooperative activation process is not fully understood yet. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.86 E-value=12 Score=26.02 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=35.0
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe-EEEEEEEEEcc
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDR-VIFSVQSKVYI 145 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~-v~~ti~~qv~~ 145 (152)
+.+.. .+++|.|+++|..|...|+.+.+..+-+..+. --|.|...+.+
T Consensus 17 lif~l-~~~pGsL~~vL~~Fa~~~INLt~IeSRP~~~~~~~Y~FfVDieg 65 (90)
T cd04931 17 LIFSL-KEEVGALAKVLRLFEEKDINLTHIESRPSRLNKDEYEFFINLDK 65 (90)
T ss_pred EEEEc-CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEEc
Confidence 43333 45789999999999999999999999886543 23555555543
No 80
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit. The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=76.74 E-value=15 Score=22.52 Aligned_cols=28 Identities=7% Similarity=0.103 Sum_probs=24.6
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEe
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFN 130 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~ 130 (152)
.++++.+.++...|.++|+++.+.....
T Consensus 7 ~d~~g~l~~i~~~l~~~~~~I~~~~~~~ 34 (71)
T cd04903 7 KDKPGAIAKVTSVLADHEINIAFMRVSR 34 (71)
T ss_pred CCCCChHHHHHHHHHHcCcCeeeeEEEe
Confidence 4678899999999999999999888765
No 81
>PRK08577 hypothetical protein; Provisional
Probab=76.14 E-value=28 Score=25.52 Aligned_cols=48 Identities=10% Similarity=0.160 Sum_probs=33.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEEEcc
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSKVYI 145 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~qv~~ 145 (152)
+.+.+ .+++|.|.+++..|.++++++.+.+..... +.....+.+.+..
T Consensus 59 I~V~~-~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~ 108 (136)
T PRK08577 59 IELVV-EDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSK 108 (136)
T ss_pred EEEEE-cCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCC
Confidence 44443 357899999999999999999988876653 3333445555543
No 82
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=74.67 E-value=17 Score=24.29 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe-EEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDR-VIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~-v~~ti~~qv~ 144 (152)
.+++|.|++++..++..|+.+.+..+-+..+. --|.|...+.
T Consensus 8 ~~~~g~L~~iL~~f~~~~inl~~IeSRP~~~~~~~y~F~id~e 50 (74)
T cd04929 8 KNEVGGLAKALKLFQELGINVVHIESRKSKRRSSEFEIFVDCE 50 (74)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEeccCCCCCceEEEEEEEE
Confidence 46789999999999999999999999776443 3355555544
No 83
>PRK07334 threonine dehydratase; Provisional
Probab=74.60 E-value=22 Score=30.91 Aligned_cols=49 Identities=10% Similarity=0.121 Sum_probs=36.3
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEee-----CCeEEEEEEEEEcc
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNS-----GDRVIFSVQSKVYI 145 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~-----~~~v~~ti~~qv~~ 145 (152)
.+.+.+ .+++++|.+|+..|.+.+++|.+.++.+. ++.....|..++.+
T Consensus 328 ~l~I~~-~dr~GlL~dI~~~is~~~~nI~~v~~~~~~~~~~~~~~~i~l~i~V~d 381 (403)
T PRK07334 328 RLRVDI-RDRPGALARVTALIGEAGANIIEVSHQRLFTDLPAKGAELELVIETRD 381 (403)
T ss_pred EEEEEe-CCCCCHHHHHHHHHhhCCCceEEEEEEecccCCCCCeEEEEEEEEeCC
Confidence 344444 36789999999999999999999998764 45555666666643
No 84
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains. The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=73.30 E-value=19 Score=22.36 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=29.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
++++.+.++...|.++|+++.+.+..... +.....+...
T Consensus 9 d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~ 49 (79)
T cd04881 9 DKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTH 49 (79)
T ss_pred CCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEc
Confidence 56789999999999999999998876543 4443444333
No 85
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=71.96 E-value=20 Score=21.98 Aligned_cols=37 Identities=8% Similarity=0.061 Sum_probs=26.6
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
..++.+.+++++|.+.|+.|...+.+..+..+.+++.
T Consensus 13 ~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~ 49 (66)
T cd04922 13 GTPGVAATFFSALAKANVNIRAIAQGSSERNISAVID 49 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEe
Confidence 3468899999999999999976655443445555443
No 86
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of
Probab=71.07 E-value=21 Score=21.77 Aligned_cols=41 Identities=7% Similarity=0.007 Sum_probs=30.6
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee--CCeEEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS--GDRVIFSVQSKV 143 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~--~~~v~~ti~~qv 143 (152)
.++++.|.++...|.++++.+.+.+.... ++...+.+...+
T Consensus 8 ~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 50 (72)
T cd04878 8 ENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEG 50 (72)
T ss_pred cCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEEC
Confidence 35678999999999999999999987664 344444444443
No 87
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=69.30 E-value=25 Score=22.04 Aligned_cols=40 Identities=18% Similarity=0.360 Sum_probs=29.9
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEee--CCeEEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNS--GDRVIFSVQSKV 143 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~--~~~v~~ti~~qv 143 (152)
++++.|.++++.|.++|+.+.+...... ++...+.|+...
T Consensus 10 d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~ 51 (72)
T cd04883 10 DRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQT 51 (72)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEec
Confidence 5678999999999999999998865443 345555566554
No 88
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-
Probab=68.66 E-value=4.3 Score=25.46 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=29.7
Q ss_pred cCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEE
Q 045349 102 GLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSK 142 (152)
Q Consensus 102 ~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~q 142 (152)
..+++|.+.+++..|.+.|+++...+....++..+..+...
T Consensus 6 ~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~a~~~~~~~ 46 (69)
T cd04901 6 HKNVPGVLGQINTILAEHNINIAAQYLQTRGEIGYVVIDID 46 (69)
T ss_pred ecCCCcHHHHHHHHHHHcCCCHHHHhccCCCCEEEEEEEcC
Confidence 34678999999999999999997776655445544444443
No 89
>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.24 E-value=19 Score=22.25 Aligned_cols=37 Identities=8% Similarity=0.043 Sum_probs=26.7
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
..++.+.+++++|.+.|++|...+.++.+..+.+++.
T Consensus 13 ~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~ 49 (66)
T cd04919 13 NMIGIAGRMFTTLADHRINIEMISQGASEINISCVID 49 (66)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 3567899999999999999966655444455555543
No 90
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH). The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=68.07 E-value=27 Score=21.88 Aligned_cols=29 Identities=14% Similarity=0.216 Sum_probs=24.7
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS 131 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~ 131 (152)
.+++|.|.+++..|.++|+++.+......
T Consensus 9 ~d~~G~L~~l~~~l~~~~i~i~~~~~~~~ 37 (69)
T cd04909 9 PDEPGVIAEVTQILGDAGISIKNIEILEI 37 (69)
T ss_pred CCCCCHHHHHHHHHHHcCCCceeeEeEEe
Confidence 36789999999999999999998876554
No 91
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B.
Probab=66.34 E-value=17 Score=23.38 Aligned_cols=38 Identities=3% Similarity=0.042 Sum_probs=28.1
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
++|.|.+|+..+..-|++|-+-++...+ +..-++|.+.
T Consensus 2 ~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~ 41 (63)
T PF13710_consen 2 QPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVS 41 (63)
T ss_dssp STTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEE
T ss_pred CcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEe
Confidence 5789999999999999999999998844 4444444443
No 92
>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel
Probab=66.24 E-value=20 Score=22.05 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=27.1
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQS 141 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~ 141 (152)
.++...+++++|++.|++|.....+ .+.+.+++..
T Consensus 13 ~~~~~~~if~~l~~~~i~v~~i~t~--~~~is~~v~~ 47 (62)
T cd04890 13 EVGFLRKIFEILEKHGISVDLIPTS--ENSVTLYLDD 47 (62)
T ss_pred ccCHHHHHHHHHHHcCCeEEEEecC--CCEEEEEEeh
Confidence 4678899999999999999988643 3666666654
No 93
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH). TH catalyses the hydroxylation of L-Tyr to 3,4-dihydroxyphenylalanine, the rate limiting step in the biosynthesis of catecholamines (dopamine, noradrenaline and adrenaline), functioning as hormones and neurotransmitters. The enzyme is not regulated by its amino acid substrate, but instead by phosphorylation at several serine residues located N-terminal of the ACT domain, and by feedback inhibition by catecholamines at the active site. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=66.18 E-value=21 Score=25.96 Aligned_cols=42 Identities=12% Similarity=0.045 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeE-EEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRV-IFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v-~~ti~~qv~ 144 (152)
.+++|.|+++|..|..+|+.+.+..+-+..+.. -|.|.+.+.
T Consensus 49 ~~~pGsL~~iL~~Fa~~gINLt~IESRP~~~~~~eY~FfIdie 91 (115)
T cd04930 49 KEGFSSLSRILKVFETFEAKIHHLESRPSRKEGGDLEVLVRCE 91 (115)
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEECCcCCCCCceEEEEEEEE
Confidence 457899999999999999999999998865432 255555544
No 94
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.54 E-value=12 Score=25.41 Aligned_cols=26 Identities=31% Similarity=0.318 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 51 LDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 51 l~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
+..||+-|.-||-+|++|++++.++.
T Consensus 13 iqqAvdTI~LLQmEieELKEknn~l~ 38 (79)
T COG3074 13 VQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHhH
Confidence 67899999999999999999887654
No 95
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=65.23 E-value=35 Score=28.53 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=31.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCe
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFN--SGDR 134 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~ 134 (152)
|.++ |.+++|.+..|-++|.++|+++.+.+.+. .++.
T Consensus 9 itv~-G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~ 47 (286)
T PRK06027 9 LTLS-CPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGR 47 (286)
T ss_pred EEEE-CCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCe
Confidence 4444 45789999999999999999999999988 7774
No 96
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=64.85 E-value=34 Score=28.62 Aligned_cols=44 Identities=14% Similarity=0.291 Sum_probs=33.0
Q ss_pred EEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 98 NLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 98 ~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
.++| .+++|..+.|=..|-++|++|++++-+... +.++-.+.+.
T Consensus 4 tv~g-~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~ 49 (280)
T TIGR00655 4 LVSC-PDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQ 49 (280)
T ss_pred EEEC-CCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEE
Confidence 3444 578999999999999999999999988754 4444333333
No 97
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=64.36 E-value=58 Score=31.18 Aligned_cols=60 Identities=15% Similarity=0.263 Sum_probs=41.2
Q ss_pred EEEEEeCC---eeeEEE-EecCCCcchHHHHHHHHHHCCcEEEEEEEEee--CCeEEEEEEEEEcc
Q 045349 86 MNITTSGS---TLEVNL-ICGLNRNFMFHEIISILEEEAAEVINVTRFNS--GDRVIFSVQSKVYI 145 (152)
Q Consensus 86 V~v~~~g~---~~~V~~-~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~--~~~v~~ti~~qv~~ 145 (152)
|.|..... .+.|.+ +...++.|+|.+|..+|.+.++.|.++++.+. ++....+|.++|.+
T Consensus 653 I~V~W~~~~~~~~~v~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~ 718 (743)
T PRK10872 653 VDAVWGESYSSGYSLVVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYN 718 (743)
T ss_pred EEeEecCCCCceeEEEEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECC
Confidence 55554322 344444 33457789999999999999999999998765 34555566666643
No 98
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=63.54 E-value=28 Score=22.02 Aligned_cols=37 Identities=11% Similarity=0.176 Sum_probs=28.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
+.++.+.+++.+|.+.|++|.-.+.++.+..+.+.+.
T Consensus 12 ~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~ 48 (65)
T cd04918 12 RSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVN 48 (65)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEe
Confidence 3467899999999999999977776665556555444
No 99
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=63.07 E-value=14 Score=29.29 Aligned_cols=38 Identities=13% Similarity=0.164 Sum_probs=33.0
Q ss_pred EecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEE
Q 045349 100 ICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIF 137 (152)
Q Consensus 100 ~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ 137 (152)
+.|.+++|++..|-++|.++|.++++++.+..++.+--
T Consensus 13 viG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~ 50 (190)
T PRK11589 13 ALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTF 50 (190)
T ss_pred EEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEE
Confidence 34678999999999999999999999999999885433
No 100
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=63.05 E-value=64 Score=30.41 Aligned_cols=43 Identities=9% Similarity=0.346 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC-CeEEEEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG-DRVIFSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~-~~v~~ti~~qv~~ 145 (152)
.+++|+|.+|..+|.+.+.+|.+.++.... +.....|..+|..
T Consensus 618 ~dr~GlLadI~~~ia~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 661 (683)
T TIGR00691 618 VDRKGVLSDLTTAISENDSNIVSISTKTYGKREAILNITVEIKN 661 (683)
T ss_pred ecCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCEEEEEEEEEECC
Confidence 467899999999999999999999987764 5555566666643
No 101
>PF02120 Flg_hook: Flagellar hook-length control protein FliK; InterPro: IPR021136 This entry represents the C-terminal domain of the flagellar hook-length control protein FliK. This entry also includes YscP of the Yersinia type III secretion system, and equivalent proteins in other pathogenic bacterial type III secretion systems. During flagellar morphogenesis in Salmonella typhimurium and Escherichia coli, flagellar hook-length control protein (FliK) controls the length of the hook by directly measuring the hook length [, ]. It is considered unlikely that FliK functions as a molecular ruler for determining hook length, but that it is more likely to be employing a novel mechanism. The deduced amino acid sequences of FliK proteins from S. typhimurium and E. coli have molecular masses of 41,748 and 39,246 Da, respectively, and are fairly hydrophilic []. Sequence comparison reveals around 50% identity, with greatest conservation in the C-terminal region, with 71% identity in the last 154 amino acids - mutagenesis of this conserved region completely abolishes motility. The central and C-terminal regions are rich in proline and glutamine respectively; it is thought that they may constitute distinct domains [].; PDB: 2RRL_A.
Probab=61.82 E-value=43 Score=22.01 Aligned_cols=47 Identities=17% Similarity=0.244 Sum_probs=32.8
Q ss_pred eEEEEEeCCeeeEEEEecCCC-----cchHHHHHHHHHHCCcEEEEEEEEee
Q 045349 85 VMNITTSGSTLEVNLICGLNR-----NFMFHEIISILEEEAAEVINVTRFNS 131 (152)
Q Consensus 85 ~V~v~~~g~~~~V~~~~~~~~-----~~~l~~il~~Le~~gL~Vv~a~~s~~ 131 (152)
.|.++..+..+.|.+.++... ..-+..+-+.|...|+.+.+.+++.-
T Consensus 28 ~v~l~~~~~~l~v~~~~~~~~~~~~L~~~~~~L~~~L~~~G~~~~~~~v~~~ 79 (85)
T PF02120_consen 28 EVKLRLQGGNLSVQFTAENPETKELLRQNLPELKERLQAQGLEVVNLSVSQG 79 (85)
T ss_dssp EEEEEEETTEEEEEEE--SSHHHHHHHHTHHHHHHHHHTTT-EEEEEEEESS
T ss_pred EEEEEEeCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 456667788888888876431 12467888999999999999888653
No 102
>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an
Probab=60.74 E-value=32 Score=20.33 Aligned_cols=36 Identities=22% Similarity=0.222 Sum_probs=25.7
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
..++.+.+++++|.+.++.|...+.+..+..+.+++
T Consensus 12 ~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v 47 (65)
T cd04892 12 GTPGVAARIFSALAEAGINIIMISQGSSEVNISFVV 47 (65)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEE
Confidence 346788999999999999998887654223333443
No 103
>PLN02705 beta-amylase
Probab=59.88 E-value=14 Score=34.71 Aligned_cols=26 Identities=19% Similarity=0.519 Sum_probs=19.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhc
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASL 38 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~Lrsl 38 (152)
.|+..+..||+||---...|.-||..
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~~ 109 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQY 109 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhc
Confidence 34555678899988888888888875
No 104
>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas
Probab=59.81 E-value=43 Score=21.37 Aligned_cols=37 Identities=19% Similarity=0.131 Sum_probs=27.6
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
..++.+.+++.+|.+.|++|...+.+..+..+.+-|.
T Consensus 13 ~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~ 49 (66)
T cd04915 13 STPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVD 49 (66)
T ss_pred CcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEE
Confidence 3567899999999999999977777665445544443
No 105
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=59.67 E-value=11 Score=21.58 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 045349 20 NEKHRRMLMKDLISQLAS 37 (152)
Q Consensus 20 ~ER~RR~~m~~~~~~Lrs 37 (152)
.=|+||++++..+..||.
T Consensus 12 qLrrr~eqLK~kLeqlrn 29 (32)
T PF02344_consen 12 QLRRRREQLKHKLEQLRN 29 (32)
T ss_dssp HHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 348899999999999985
No 106
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=59.19 E-value=21 Score=24.04 Aligned_cols=26 Identities=31% Similarity=0.334 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 50 ILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 50 il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
-+..||+-|..|+.++++|+.+...+
T Consensus 12 ki~~aveti~~Lq~e~eeLke~n~~L 37 (72)
T PF06005_consen 12 KIQQAVETIALLQMENEELKEKNNEL 37 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 47889999999999999999975544
No 107
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=59.03 E-value=46 Score=25.70 Aligned_cols=41 Identities=5% Similarity=0.023 Sum_probs=32.4
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSKV 143 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~qv 143 (152)
.+++|.|.+|...|...|+++.+.++...+ +..-.+|.+..
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~ 52 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSG 52 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEEC
Confidence 367899999999999999999999987765 34446666553
No 108
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=58.55 E-value=84 Score=29.84 Aligned_cols=44 Identities=2% Similarity=-0.021 Sum_probs=34.5
Q ss_pred cCCCcchHHHHHHHHHHCCcEEEEEEEEeeCC-eEEEEEEEEEcc
Q 045349 102 GLNRNFMFHEIISILEEEAAEVINVTRFNSGD-RVIFSVQSKVYI 145 (152)
Q Consensus 102 ~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~-~v~~ti~~qv~~ 145 (152)
..+++|+|.+|..++.+.++.|.++++.+.++ .....|..+|.+
T Consensus 633 ~~dr~GlL~dI~~~i~~~~~nI~~v~~~~~~~~~~~~~~~ieV~~ 677 (702)
T PRK11092 633 MFNHQGALANLTAAINTTGSNIQSLNTEEKDGRVYSAFIRLTARD 677 (702)
T ss_pred EeCCCCHHHHHHHHHHHCCCCeEEEEEEEcCCCEEEEEEEEEECC
Confidence 34678999999999999999999999877654 445556666653
No 109
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=57.45 E-value=53 Score=27.53 Aligned_cols=48 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
.|.++| .+++|.+.+|-+.|-++|++|.+.+..+-...-+|++.+.+.
T Consensus 9 vitv~G-~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~ 56 (286)
T PRK13011 9 VLTLSC-PSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFH 56 (286)
T ss_pred EEEEEe-CCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEe
Confidence 355555 578999999999999999999999987432322333455553
No 110
>TIGR02263 benz_CoA_red_C benzoyl-CoA reductase, subunit C. This model describes C subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This enzyme acts under anaerobic conditions.
Probab=56.43 E-value=64 Score=27.91 Aligned_cols=85 Identities=12% Similarity=0.065 Sum_probs=48.1
Q ss_pred HHHHHHHHHHhcCCCC-CCCC-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEEeCCeeeEEEE
Q 045349 27 LMKDLISQLASLIPSN-SKLS-----MPQILDDATSYIMHLQKNKESLERKKALLKGDDHTEPSVMNITTSGSTLEVNLI 100 (152)
Q Consensus 27 ~m~~~~~~LrsllP~~-~K~~-----~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~~~p~V~v~~~g~~~~V~~~ 100 (152)
++-..|..|+..-|.. +-.+ .+....+..+|++.|++.+++|+++... ...+.-|. +
T Consensus 176 ~~~~~l~~l~~~~p~pitg~e~~~~~~~~~~~~~~e~~~~L~~~l~el~~~~~~----------------~~~~~RIl-~ 238 (380)
T TIGR02263 176 KLIQALYGLRADEPWKVPSADLYLLLRAGLVIPVEEHNQMLADYLAAARKQEAP----------------IKDNCRVI-I 238 (380)
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHhcccc----------------CCCCCEEE-E
Confidence 3344456778777764 2111 1122344678888888888888753320 01111222 3
Q ss_pred ecCCCcchHHHHHHHHHHCCcEEEEEEE
Q 045349 101 CGLNRNFMFHEIISILEEEAAEVINVTR 128 (152)
Q Consensus 101 ~~~~~~~~l~~il~~Le~~gL~Vv~a~~ 128 (152)
+|...+....++++.+|+.|..|+.-..
T Consensus 239 tG~~~~~~~~k~~~~iE~~G~~VV~dd~ 266 (380)
T TIGR02263 239 CGMFCEQPPLNLIKSIELSGCYIVDDDF 266 (380)
T ss_pred ECcCCCCchHHHHHHHHHCCCEEEEecC
Confidence 3322223346899999999999996644
No 111
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=56.20 E-value=50 Score=28.44 Aligned_cols=55 Identities=24% Similarity=0.345 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHH---------hcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 045349 24 RRMLMKDLISQLA---------SLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALLKGD 78 (152)
Q Consensus 24 RR~~m~~~~~~Lr---------sllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~ 78 (152)
|...++..+..|- ++.|...+.+.+.+|.++-+-.+.|+.++++|.++..++.+.
T Consensus 38 r~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD 101 (319)
T PF09789_consen 38 RYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGD 101 (319)
T ss_pred HHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 4455555555554 333444667888999999999999999999999998766654
No 112
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=55.62 E-value=72 Score=24.48 Aligned_cols=41 Identities=7% Similarity=0.022 Sum_probs=32.3
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSKV 143 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~qv 143 (152)
.+++|.|.+|...|...|+++.+.++..-+ +..-.||.+.-
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~ 51 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG 51 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC
Confidence 367899999999999999999999988765 33445565543
No 113
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=55.54 E-value=50 Score=27.38 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHhcCCCCC--------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 25 RMLMKDLISQLASLIPSNS--------------------KLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~~--------------------K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
|+-|..+|..|+..=.... .+-..-+|.|+ =||.++++|++|+.+..+
T Consensus 6 ~qLI~~lf~RL~~ae~~prD~eAe~lI~~~~~~qP~A~Y~laQ~vlvQE~--AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 6 RQLIDDLFSRLKQAEAQPRDPEAEALIAQALARQPDAPYYLAQTVLVQEQ--ALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 5678999999998876531 12222233332 278899999999998754
No 114
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional
Probab=54.96 E-value=1e+02 Score=24.28 Aligned_cols=47 Identities=2% Similarity=0.073 Sum_probs=37.1
Q ss_pred EecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC----CeEEEEEEEEEccc
Q 045349 100 ICGLNRNFMFHEIISILEEEAAEVINVTRFNSG----DRVIFSVQSKVYIT 146 (152)
Q Consensus 100 ~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~----~~v~~ti~~qv~~s 146 (152)
+.+..++|.+.++-+.|-++|++|.+.+..+.+ +.-.|..++++..+
T Consensus 100 v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP 150 (190)
T PRK11589 100 VEVADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSP 150 (190)
T ss_pred EEECCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcC
Confidence 356688999999999999999999998876654 44567777777544
No 115
>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD
Probab=54.80 E-value=45 Score=21.68 Aligned_cols=37 Identities=11% Similarity=0.171 Sum_probs=28.0
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~q 142 (152)
..++.+.+++++|.+.|++|..... .++.+.+++...
T Consensus 13 ~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~~ 49 (75)
T cd04912 13 GAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDPT 49 (75)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEch
Confidence 3468899999999999999987764 346666666543
No 116
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=54.66 E-value=25 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.281 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 50 ILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 50 il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
-+..||+-|--||-+|++|+.+...+.
T Consensus 12 KIqqAvdtI~LLqmEieELKekn~~L~ 38 (79)
T PRK15422 12 KVQQAIDTITLLQMEIEELKEKNNSLS 38 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378899999999999999999876553
No 117
>COG3830 ACT domain-containing protein [Signal transduction mechanisms]
Probab=54.02 E-value=12 Score=26.55 Aligned_cols=38 Identities=11% Similarity=0.247 Sum_probs=32.8
Q ss_pred EecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEE
Q 045349 100 ICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIF 137 (152)
Q Consensus 100 ~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ 137 (152)
+.|..++|....+-.+|-++|+++++.+=+.+++.+-.
T Consensus 8 V~GkDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm 45 (90)
T COG3830 8 VIGKDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTM 45 (90)
T ss_pred EEcCCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhcee
Confidence 45788999999999999999999999998888775443
No 118
>PF14992 TMCO5: TMCO5 family
Probab=53.93 E-value=23 Score=30.00 Aligned_cols=28 Identities=21% Similarity=0.398 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 47 MPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 47 ~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
...+..++++||+.|++.++.++..++.
T Consensus 142 v~~l~eDq~~~i~klkE~L~rmE~ekE~ 169 (280)
T PF14992_consen 142 VHQLCEDQANEIKKLKEKLRRMEEEKEM 169 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556899999999999999999988764
No 119
>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII. This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.50 E-value=50 Score=20.13 Aligned_cols=36 Identities=11% Similarity=0.062 Sum_probs=25.3
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
..++.+.+++.+|.+.|++|.-.+.+..+..+.+++
T Consensus 13 ~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v 48 (66)
T cd04916 13 NTVGVSARATAALAKAGINIRMINQGSSEISIMIGV 48 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEE
Confidence 356788999999999999997665543334444444
No 120
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=53.04 E-value=60 Score=21.45 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=27.9
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~q 142 (152)
..++.+.+|+++|.+.|++|-..+.+ .+.+.+|+...
T Consensus 13 ~~~g~~~~IF~~La~~~I~VDmI~~s--~~~iSftv~~~ 49 (75)
T cd04932 13 HAQGFLAKVFGILAKHNISVDLITTS--EISVALTLDNT 49 (75)
T ss_pred CCcCHHHHHHHHHHHcCCcEEEEeec--CCEEEEEEecc
Confidence 35788999999999999988887643 35566666643
No 121
>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI. This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th
Probab=52.60 E-value=49 Score=20.70 Aligned_cols=24 Identities=17% Similarity=0.308 Sum_probs=20.4
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVT 127 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~ 127 (152)
..++.+.+++.+|.+.|++|...+
T Consensus 13 ~~~gi~~~if~aL~~~~I~v~~~~ 36 (64)
T cd04937 13 GVPGVMAKIVGALSKEGIEILQTA 36 (64)
T ss_pred CCcCHHHHHHHHHHHCCCCEEEEE
Confidence 457899999999999999997444
No 122
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.28 E-value=53 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.152 Sum_probs=24.0
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS 131 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~ 131 (152)
..+||-|.++++.|.+ |.+|+..+....
T Consensus 6 pdkPG~l~~~~~~i~~-~~nI~~~~~~~~ 33 (68)
T cd04885 6 PERPGALKKFLELLGP-PRNITEFHYRNQ 33 (68)
T ss_pred CCCCCHHHHHHHHhCC-CCcEEEEEEEcC
Confidence 4688999999999999 999998887653
No 123
>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.90 E-value=53 Score=21.69 Aligned_cols=36 Identities=14% Similarity=0.183 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSK 142 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~q 142 (152)
.++.+.+++++|++.|++|-.... ..+.+.+++...
T Consensus 14 ~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~ 49 (75)
T cd04935 14 QVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPD 49 (75)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCc
Confidence 468899999999999998888764 235666666543
No 124
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=51.77 E-value=49 Score=21.19 Aligned_cols=41 Identities=17% Similarity=0.280 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045349 22 KHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLE 69 (152)
Q Consensus 22 R~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~ 69 (152)
|.-|-.+...++.+..++-. .+ .++|.+||+++-+.++.+.
T Consensus 17 R~~RHD~~NhLqvI~gllql----g~---~~~a~eYi~~~~~~~~~~s 57 (62)
T PF14689_consen 17 RAQRHDFLNHLQVIYGLLQL----GK---YEEAKEYIKELSKDLQQES 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHT----T----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC----CC---HHHHHHHHHHHHHHHHHHH
Confidence 66666777778888888732 22 7789999999999888773
No 125
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.69 E-value=47 Score=19.38 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEe
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFN 130 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~ 130 (152)
+.++.+.+++..|.+.|+.+...+.+.
T Consensus 10 ~~~~~~~~i~~~L~~~~i~i~~i~~~~ 36 (61)
T cd04891 10 DKPGVAAKIFSALAEAGINVDMIVQSV 36 (61)
T ss_pred CCCcHHHHHHHHHHHcCCcEEEEEEcC
Confidence 456889999999999999998766543
No 126
>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=51.19 E-value=52 Score=19.66 Aligned_cols=33 Identities=9% Similarity=0.052 Sum_probs=24.5
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
.++.+.+++++|.+.++.|...+.+ +..+.+++
T Consensus 13 ~~~~~~~i~~~L~~~~i~v~~i~~s--~~~is~~v 45 (63)
T cd04923 13 HPGVAAKMFKALAEAGINIEMISTS--EIKISCLV 45 (63)
T ss_pred CccHHHHHHHHHHHCCCCEEEEEcc--CCeEEEEE
Confidence 4577899999999999999877643 34444444
No 127
>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D.
Probab=50.79 E-value=30 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=20.9
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVT 127 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~ 127 (152)
+.+|.+.+++..|.+.|++|...+
T Consensus 19 ~~~Gv~a~i~~~La~~~I~i~~is 42 (65)
T PF13840_consen 19 DVPGVAAKIFSALAEAGINIFMIS 42 (65)
T ss_dssp TSHHHHHHHHHHHHHTTS-ECEEE
T ss_pred CcccHHHHHHHHHHHCCCCEEEEE
Confidence 368999999999999999998888
No 128
>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat
Probab=50.66 E-value=57 Score=20.92 Aligned_cols=35 Identities=23% Similarity=0.235 Sum_probs=25.3
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
.++.+.+++++|.+.++.+...+.+..+..+.+++
T Consensus 14 ~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v 48 (80)
T cd04921 14 VPGIAARIFSALARAGINVILISQASSEHSISFVV 48 (80)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEE
Confidence 45789999999999999997776554344444444
No 129
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=50.22 E-value=25 Score=22.50 Aligned_cols=20 Identities=35% Similarity=0.514 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.||.+|+.++..|+.+.+.|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L 45 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 68888888888888776554
No 130
>COG4492 PheB ACT domain-containing protein [General function prediction only]
Probab=49.53 E-value=39 Score=25.84 Aligned_cols=42 Identities=10% Similarity=0.239 Sum_probs=33.5
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEE-EEeeCCeEEEEEEEEEcc
Q 045349 104 NRNFMFHEIISILEEEAAEVINVT-RFNSGDRVIFSVQSKVYI 145 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~-~s~~~~~v~~ti~~qv~~ 145 (152)
++.|.|+++++++-+.++.|++.+ .-+.+++.-.||......
T Consensus 81 dr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ss 123 (150)
T COG4492 81 DRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSS 123 (150)
T ss_pred hhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchh
Confidence 567999999999999999999987 456788766666655543
No 131
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=49.10 E-value=77 Score=27.76 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=53.7
Q ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC---CCceEEEEEeCCeeeEEEEecCCCcchHHHHHHHH-HHC--
Q 045349 46 SMPQILDDATSYIMHLQKNKESLERKKALLKGDDHT---EPSVMNITTSGSTLEVNLICGLNRNFMFHEIISIL-EEE-- 119 (152)
Q Consensus 46 ~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~---~~p~V~v~~~g~~~~V~~~~~~~~~~~l~~il~~L-e~~-- 119 (152)
+.++.-..|-.-|+.|+.++.+|+++...|.-..+| ...-++++.--.+-+..++. +-|.+...-. +..
T Consensus 73 ~D~em~ema~~Ei~~~~~~~~~le~~L~~lLlPkDpnd~knvilEIRagtGGdEAalFa-----gDLfrMY~rYAe~kgW 147 (363)
T COG0216 73 KDPEMREMAEEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAALFA-----GDLFRMYSRYAESKGW 147 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCcCeEEEEecCCCchHHHHHH-----HHHHHHHHHHHHhCCC
Confidence 567788889999999999999999998866554433 34445665433333333322 1233333333 333
Q ss_pred CcEEEEEEEEeeCCe
Q 045349 120 AAEVINVTRFNSGDR 134 (152)
Q Consensus 120 gL~Vv~a~~s~~~~~ 134 (152)
.++|++++-+..||.
T Consensus 148 k~ei~s~se~~~GG~ 162 (363)
T COG0216 148 KVEILSASESELGGY 162 (363)
T ss_pred EEEEeecCcccCCCc
Confidence 489999998888884
No 132
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the N-terminal ACT domain of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=48.62 E-value=80 Score=21.13 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=31.3
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDR 134 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~ 134 (152)
.|.++|. .+.|+=.++...+-+.||.|.-..+++.|.=
T Consensus 2 vitvnCP-DktGLgcdlcr~il~fGl~i~rgd~sTDGkW 39 (69)
T cd04894 2 VITINCP-DKTGLGCDLCRIILEFGLNITRGDDSTDGRW 39 (69)
T ss_pred EEEEeCC-CccCcccHHHHHHHHhceEEEecccccCCcE
Confidence 3666774 6678888999999999999999999996553
No 133
>PRK11020 hypothetical protein; Provisional
Probab=47.43 E-value=46 Score=24.64 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045349 21 EKHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKA 73 (152)
Q Consensus 21 ER~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~ 73 (152)
+++-=+++++++..+|.=++.......+.++.+-.+-|..|..+|..|..++.
T Consensus 3 ~K~Eiq~L~drLD~~~~Klaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 3 EKNEIKRLSDRLDAIRHKLAAASLRGDAEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556789999999999888887777788888888888888888888887654
No 134
>smart00338 BRLZ basic region leucin zipper.
Probab=46.98 E-value=28 Score=22.23 Aligned_cols=20 Identities=30% Similarity=0.383 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.|+..|+.+++.|+.+.+.|
T Consensus 26 ~~~~~Le~~~~~L~~en~~L 45 (65)
T smart00338 26 AEIEELERKVEQLEAENERL 45 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 58888888888888776654
No 135
>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=46.50 E-value=65 Score=19.50 Aligned_cols=36 Identities=17% Similarity=0.166 Sum_probs=24.9
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
+.++.+.+++++|.+.|+.|.-.+.+..+..+.+++
T Consensus 13 ~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i 48 (66)
T cd04924 13 GTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVV 48 (66)
T ss_pred CCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEE
Confidence 346788999999999999996665443334444444
No 136
>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=45.78 E-value=74 Score=21.42 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=27.5
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQS 141 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~ 141 (152)
..++.+.+|+++|++.|++|-..+. ..+.+.+++..
T Consensus 13 ~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~ 48 (78)
T cd04933 13 GQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDP 48 (78)
T ss_pred CccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEh
Confidence 3468899999999999988887764 23666676654
No 137
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional
Probab=44.58 E-value=92 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=26.7
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
.+++|.|.+++..+..-|++|-+-++..-++
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~ 41 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQNTD 41 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeeecCC
Confidence 3678999999999999999999999877443
No 138
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=44.56 E-value=75 Score=20.90 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=26.6
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQS 141 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~ 141 (152)
.++.+.+|++.|++.|++|-....+ ++.+.+++..
T Consensus 14 ~~g~~~~If~~la~~~I~vd~I~~s--~~~isftv~~ 48 (73)
T cd04934 14 SHGFLARIFAILDKYRLSVDLISTS--EVHVSMALHM 48 (73)
T ss_pred ccCHHHHHHHHHHHcCCcEEEEEeC--CCEEEEEEeh
Confidence 4688999999999999888877642 3556666653
No 139
>PRK11899 prephenate dehydratase; Provisional
Probab=43.78 E-value=92 Score=26.06 Aligned_cols=43 Identities=5% Similarity=0.029 Sum_probs=35.4
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeE-EEEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRV-IFSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v-~~ti~~qv~~ 145 (152)
.+++|.|+++|.+|-..|++...-.+-+..+.. -|.|...+.+
T Consensus 202 ~~~pGaL~~vL~~Fa~~gINLtkIeSRP~~~~~~~Y~F~id~eg 245 (279)
T PRK11899 202 RNIPAALYKALGGFATNGVNMTKLESYMVGGSFTATQFYADIEG 245 (279)
T ss_pred CCCCChHHHHHHHHHHcCCCeeeEEeeecCCCCceEEEEEEEEC
Confidence 468899999999999999999999998886653 3666666654
No 140
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins. This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee
Probab=43.58 E-value=76 Score=19.40 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=20.5
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTR 128 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~ 128 (152)
..++.+.+++++|.+.|+.|.....
T Consensus 11 ~~~g~~~~i~~~L~~~~I~i~~i~~ 35 (75)
T cd04913 11 DKPGVAAKIFGALAEANINVDMIVQ 35 (75)
T ss_pred CCCcHHHHHHHHHHHcCCeEEEEEe
Confidence 4578899999999999999965543
No 141
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=43.03 E-value=90 Score=26.23 Aligned_cols=41 Identities=17% Similarity=0.412 Sum_probs=31.1
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE--eeCCeEEEE
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRF--NSGDRVIFS 138 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s--~~~~~v~~t 138 (152)
+.++| .+++|.+..|-..|-++|++|++++-. +..+.+|-.
T Consensus 12 itv~G-~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~ 54 (289)
T PRK13010 12 LTLAC-PSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMR 54 (289)
T ss_pred EEEEC-CCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEE
Confidence 44455 578999999999999999999999985 333444433
No 142
>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains. This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu
Probab=42.08 E-value=75 Score=18.90 Aligned_cols=33 Identities=6% Similarity=0.050 Sum_probs=24.4
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSV 139 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti 139 (152)
.++.+.+++..|.+.|+.|...+.+ +..+.+++
T Consensus 13 ~~~~~~~i~~~L~~~~i~v~~i~~s--~~~is~~v 45 (63)
T cd04936 13 HPGVAAKMFEALAEAGINIEMISTS--EIKISCLI 45 (63)
T ss_pred CccHHHHHHHHHHHCCCcEEEEEcc--CceEEEEE
Confidence 4678899999999999999877743 34444443
No 143
>PHA03386 P10 fibrous body protein; Provisional
Probab=41.86 E-value=53 Score=23.41 Aligned_cols=33 Identities=15% Similarity=0.288 Sum_probs=25.5
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045349 45 LSMPQILDDATSYIMHLQKNKESLERKKALLKG 77 (152)
Q Consensus 45 ~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~ 77 (152)
|||++||-.--.-|+.+-.+|..|+...+.+..
T Consensus 1 MSKpnILl~Ir~dIkavd~KVdaLQ~qV~dv~~ 33 (94)
T PHA03386 1 MSKPSVLTQILDAVQEVDTKVDALQTQLNGLEE 33 (94)
T ss_pred CCcchHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 688899988888889977777777776665543
No 144
>PRK11898 prephenate dehydratase; Provisional
Probab=40.82 E-value=92 Score=25.93 Aligned_cols=41 Identities=7% Similarity=-0.030 Sum_probs=31.6
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeE-EEEEEEEEc
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRV-IFSVQSKVY 144 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v-~~ti~~qv~ 144 (152)
+++|.|+++|..|.+.|+++.+..+-+..+.. -|.|.+.+.
T Consensus 206 ~~pGsL~~~L~~F~~~~INLt~IeSRP~~~~~~~y~F~vd~e 247 (283)
T PRK11898 206 NLPGALYKALSEFAWRGINLTRIESRPTKTGLGTYFFFIDVE 247 (283)
T ss_pred CCccHHHHHHHHHHHCCCCeeeEecccCCCCCccEEEEEEEE
Confidence 34899999999999999999999998875542 255445444
No 145
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=39.48 E-value=75 Score=27.41 Aligned_cols=48 Identities=21% Similarity=0.409 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 25 RMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
|..+.+.....-.-+|-+++.+ |+++=+-|.+|+.+++.|+++...+.
T Consensus 269 r~~~qe~~e~~L~~LnlPTRsE----lDe~~krL~ELrR~vr~L~k~l~~l~ 316 (320)
T TIGR01834 269 RIQQQEIVEALLKMLNLPTRSE----LDEAHQRIQQLRREVKSLKKRLGDLE 316 (320)
T ss_pred HHHHHHHHHHHHHhCCCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3344444444444555544444 89999999999999999999887664
No 146
>PRK08198 threonine dehydratase; Provisional
Probab=38.71 E-value=1.7e+02 Score=25.20 Aligned_cols=42 Identities=21% Similarity=0.176 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee-----CCeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS-----GDRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~-----~~~v~~ti~~qv~ 144 (152)
.+++|.|.++++.+-+.|.+|++.+.... .+..-.+|.+++.
T Consensus 335 ~D~PG~L~~ll~~i~~~g~NI~~i~~~~~~~~~~~~~~~v~v~ie~~ 381 (404)
T PRK08198 335 PDRPGQLAKLLSIIAELGANVIDVDHDRFSPDLRLGEVEVELTLETR 381 (404)
T ss_pred CCCCCHHHHHHHHHhhCCCceEEEEEEEccCCCCCceEEEEEEEEeC
Confidence 36789999999999999999999887653 2456666666664
No 147
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=36.53 E-value=95 Score=21.00 Aligned_cols=31 Identities=10% Similarity=0.056 Sum_probs=26.6
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
.+++|.|.++...+..-|+++-+-++..-++
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~ 40 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNERDT 40 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecccCC
Confidence 3678999999999999999999988876544
No 148
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional
Probab=35.33 E-value=1.4e+02 Score=26.15 Aligned_cols=43 Identities=7% Similarity=-0.114 Sum_probs=35.5
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEE-EEEEEEEcc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRVI-FSVQSKVYI 145 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~-~ti~~qv~~ 145 (152)
.+++|.|+++|..|...|++...-.+-+..+..+ |.|.+.+.+
T Consensus 305 ~~~pGaL~~~L~~Fa~~giNLtkIeSRP~~~~~~~Y~Ffid~eg 348 (386)
T PRK10622 305 GQQAGALVEALLVLRNHNLIMTKLESRPIHGNPWEEMFYLDVQA 348 (386)
T ss_pred CCCCcHHHHHHHHHHHcCCCeeEEEeeecCCCCceEEEEEEEeC
Confidence 4789999999999999999999999988776643 666666654
No 149
>COG2061 ACT-domain-containing protein, predicted allosteric regulator of homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=34.58 E-value=1.6e+02 Score=23.15 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee---CCeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS---GDRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~---~~~v~~ti~~qv~ 144 (152)
+.+||.|.++++=|-+.|.+|++..-+.. ++++-..|.+++.
T Consensus 13 ~D~PGQLl~vLqPls~~g~NiItIiH~r~kk~g~r~pV~i~~~~d 57 (170)
T COG2061 13 KDKPGQLLKVLQPLSKTGANIITIIHSRDKKYGPRVPVQIVFEGD 57 (170)
T ss_pred cCCCcchhhhhcchhhcCccEEEEEeecCcccCCceeEEEEEEec
Confidence 46899999999999999999999998876 6676666666654
No 150
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=33.81 E-value=98 Score=20.19 Aligned_cols=28 Identities=21% Similarity=0.240 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 48 PQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
.+-|.+|=...+.|+++|+.|+.+.+.+
T Consensus 31 e~kLqeaE~rn~eL~~ei~~L~~e~ee~ 58 (61)
T PF08826_consen 31 ESKLQEAEKRNRELEQEIERLKKEMEEL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999988754
No 151
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=32.94 E-value=56 Score=25.80 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhhhccCCCC-------CCceEEEEEeCCeeeEEE
Q 045349 58 IMHLQKNKESLERKKALLKGDDHT-------EPSVMNITTSGSTLEVNL 99 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l~~~~~~-------~~p~V~v~~~g~~~~V~~ 99 (152)
|..|++++++|+.+.+.|...... .-..+.|....++++|-+
T Consensus 1 I~~LE~~~~~l~~e~~~Lk~~p~~~iekiEYkFdqLKVe~LeGTLNIGl 49 (176)
T PF10737_consen 1 IQRLEQRLQELQQELEELKQQPPTSIEKIEYKFDQLKVETLEGTLNIGL 49 (176)
T ss_pred ChHHHHHHHHHHHHHHHHHhCCCCceeheeeehhhheeecccceeeecc
Confidence 567888888888888877543221 222344555556666554
No 152
>PRK00227 glnD PII uridylyl-transferase; Provisional
Probab=31.18 E-value=2e+02 Score=27.43 Aligned_cols=44 Identities=2% Similarity=0.009 Sum_probs=34.4
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
.|+++-...+++.++++.-+|--+|+.|.+|++.+ ++...-.+.
T Consensus 548 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~~~-~~~~~~~~~ 591 (693)
T PRK00227 548 FFTVIWHGDYPRELVRVLALIAAKGWNILSARMVA-NGPWSAEFD 591 (693)
T ss_pred eEEEEecCCcccHHHHHHHHHHhcCceeeEeEEec-CCceEEEEE
Confidence 56666544678999999999999999999999988 665443333
No 153
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=31.17 E-value=67 Score=19.94 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHhhhc
Q 045349 58 IMHLQKNKESLERKKALLK 76 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l~ 76 (152)
|.++-+++.+|+++++.|.
T Consensus 21 iedid~qIaeLe~KR~~Lv 39 (46)
T PF08946_consen 21 IEDIDEQIAELEAKRQRLV 39 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3456778888888887664
No 154
>PRK06382 threonine dehydratase; Provisional
Probab=31.11 E-value=1.7e+02 Score=25.37 Aligned_cols=42 Identities=7% Similarity=0.004 Sum_probs=31.1
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEE----ee-CCeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRF----NS-GDRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s----~~-~~~v~~ti~~qv~ 144 (152)
..++|.|.++.+.|.++|.+|++.... .. .+....+|.++..
T Consensus 338 ~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~ 384 (406)
T PRK06382 338 PDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVR 384 (406)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeC
Confidence 357899999999999999999988764 22 2345566666653
No 155
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=30.23 E-value=1.7e+02 Score=27.95 Aligned_cols=49 Identities=18% Similarity=0.352 Sum_probs=35.0
Q ss_pred eeEEE-EecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe-EEEEEEEEE
Q 045349 95 LEVNL-ICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDR-VIFSVQSKV 143 (152)
Q Consensus 95 ~~V~~-~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~-v~~ti~~qv 143 (152)
+.+.+ +...+++|+|.+|+++|-+.+..|.+++....++. ....|..++
T Consensus 626 f~~~i~v~~~~r~glL~~i~~~i~~~~~ni~~v~~~~~~~~~~~~~~~i~v 676 (701)
T COG0317 626 YPVDIEIRAYDRSGLLRDVSQVLANEKINVLGVNTRSDKDQFATMQFTIEV 676 (701)
T ss_pred eEEEEEEEEccccchHHHHHHHHHhCCCceEEeeccccCCceEEEEEEEEE
Confidence 44444 33457889999999999999999999999886333 334444444
No 156
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=29.93 E-value=2.9e+02 Score=23.51 Aligned_cols=42 Identities=7% Similarity=0.114 Sum_probs=31.2
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEee-----CCeEEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNS-----GDRVIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~-----~~~v~~ti~~qv~ 144 (152)
.+++|.|.++++.+.+.|.+|++...... .+....+|.++..
T Consensus 313 ~D~pG~L~~v~~~i~~~~~NI~~i~~~r~~~~~~~~~~~v~v~vet~ 359 (380)
T TIGR01127 313 PDRPGALYHLLESIAEARANIVKIDHDRLSKEIPPGFAMVEITLETR 359 (380)
T ss_pred CCCCCHHHHHHHHHhcCCCcEEEEEeeccccCCCCceEEEEEEEEeC
Confidence 36789999999999999999999876522 2345555666553
No 157
>PRK06635 aspartate kinase; Reviewed
Probab=29.55 E-value=2.5e+02 Score=24.11 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=23.8
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
.+++.+.+++.+|.+.|++|...+.+...
T Consensus 272 ~~~g~l~~i~~~L~~~~I~i~~is~s~~~ 300 (404)
T PRK06635 272 DKPGIAAQIFGALAEANINVDMIVQNVSE 300 (404)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEEecCCC
Confidence 45788999999999999999987665433
No 158
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=29.26 E-value=83 Score=16.71 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045349 58 IMHLQKNKESLERKKAL 74 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~ 74 (152)
|..|+.+|.+|+.+.+.
T Consensus 3 ~~rlr~rI~dLer~L~~ 19 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSE 19 (23)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55778888888877653
No 159
>cd09235 V_Alix Middle V-domain of mammalian Alix and related domains are dimerization and protein interaction modules. This family contains the middle V-shaped (V) domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X) and related domains. It belongs to the V_Alix_like superfamily which includes the V-domains of Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), is part of the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in membrane remodeling processes, including the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), the abscission reactions of mammalian cell division, and in apoptosis. The Alix V-domain is a dimerization domain, and contains a binding site, partially conserved in the
Probab=29.25 E-value=1.2e+02 Score=25.73 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=31.1
Q ss_pred HHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 33 SQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 33 ~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
..|...+|.....+.+ -...++..++.+-++|+.|+.+++.+
T Consensus 169 ~~l~~~lPss~~~~~~-~~~~~v~~Lr~~l~~l~~lk~eR~~~ 210 (339)
T cd09235 169 EELANAIPSASPAKTL-QGSEAVQELRQLMEQVETIKAEREVI 210 (339)
T ss_pred HHHHHhCCCCCCCCCc-chhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466678876433322 47788899999999999999988765
No 160
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=29.22 E-value=81 Score=27.80 Aligned_cols=28 Identities=21% Similarity=0.306 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 48 PQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
...+++-++|.+.|++++++++..+..+
T Consensus 138 ~~r~n~l~eY~q~Laek~Ek~e~drkK~ 165 (449)
T KOG3896|consen 138 VNRLNELTEYMQRLAEKIEKAEKDRKKG 165 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHhcc
Confidence 4679999999999999999998766543
No 161
>PRK04390 rnpA ribonuclease P; Reviewed
Probab=29.07 E-value=1.8e+02 Score=21.06 Aligned_cols=31 Identities=6% Similarity=0.186 Sum_probs=23.4
Q ss_pred CchhhhhHHHHHHH-HHHHHHHHHHHhcCCCC
Q 045349 12 SSRAQRNINEKHRR-MLMKDLISQLASLIPSN 42 (152)
Q Consensus 12 ~~~~~h~~~ER~RR-~~m~~~~~~LrsllP~~ 42 (152)
+++..+++.+|+|= ..+.+.|......+|..
T Consensus 51 sKK~~~~AV~RNRiKR~lRE~~R~~~~~l~~~ 82 (120)
T PRK04390 51 GKKTAKRAVERNYMKRVIREWFRLNQHRLPPV 82 (120)
T ss_pred ecccCcchhhhhHHHHHHHHHHHhccccCCCc
Confidence 45667889999994 45788888888888854
No 162
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=28.81 E-value=1.4e+02 Score=19.80 Aligned_cols=31 Identities=23% Similarity=0.198 Sum_probs=25.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 44 KLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 44 K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
+-+-...|++|..-+.+|+++++.|..+.+.
T Consensus 35 Rd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 35 RDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455677999999999999999999988654
No 163
>COG4747 ACT domain-containing protein [General function prediction only]
Probab=28.54 E-value=1.6e+02 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.265 Sum_probs=28.5
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
|.++.. +++|.|..+...|-+.|+++-..++..-++
T Consensus 6 ISvFlE-Nk~GRL~~~~~~L~eagINiRA~tiAdt~d 41 (142)
T COG4747 6 ISVFLE-NKPGRLASVANKLKEAGINIRAFTIADTGD 41 (142)
T ss_pred EEEEec-CCcchHHHHHHHHHHcCCceEEEEeccccC
Confidence 445554 678999999999999999998888765555
No 164
>PLN02905 beta-amylase
Probab=28.18 E-value=74 Score=30.17 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=23.2
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcC
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLI 39 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~Lrsll 39 (152)
..|+..+..||+||---...|.-||..=
T Consensus 85 ~ere~~~~rer~rrai~~~i~~glr~~g 112 (702)
T PLN02905 85 EEKERTKLRERHRRAITARILAGLRRHG 112 (702)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777899999999999999999864
No 165
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=27.95 E-value=68 Score=20.29 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 045349 57 YIMHLQKNKESLERKKALL 75 (152)
Q Consensus 57 YIk~L~~~v~~L~~~k~~l 75 (152)
.++.+++++++++++.+++
T Consensus 49 ~~~~~~k~l~~le~e~~~l 67 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQL 67 (68)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3566777777777766643
No 166
>cd09236 V_AnPalA_UmRIM20_like Protein-interacting V-domains of Aspergillus nidulans PalA/RIM20, Ustilago maydis RIM20, and related proteins. This family belongs to the V_Alix_like superfamily which includes the V-shaped (V) domains of Bro1 and Rim20 from Saccharomyces cerevisiae, mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Aspergillus nidulas PalA/RIM20 and Ustilago maydis RIM20, like Saccharomyces cerevisiae Rim20, participate in the response to the external pH via the Pal/Rim101 pathway; however, Saccharomyces cerevisiae Rim20 does not belong to this family. This pathway is a signaling cascade resulting in the activation of the transcription factor PacC/Rim101. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. Aspergillus nidulas Pa
Probab=27.33 E-value=1.4e+02 Score=25.64 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=30.9
Q ss_pred HHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 33 SQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 33 ~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
..|.+.+|+....+.+.-+..+|..++.+-++|+.|+.++..+.
T Consensus 172 ~~l~~~~Ps~~~~~~~~~~~~~i~~Lr~~l~~l~~l~~eR~~~~ 215 (353)
T cd09236 172 RDLENFVPSSRRPSIPPELERHVRALRVSLEELDRLESRRRRKV 215 (353)
T ss_pred HHHHHhCCCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566888763333334567888888888888988888877553
No 167
>KOG3582 consensus Mlx interactors and related transcription factors [Transcription]
Probab=27.33 E-value=19 Score=34.37 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=48.2
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSN-----SKLSMPQILDDATSYIMHLQKNKESLERKK 72 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k 72 (152)
.-.+..|...+|+||-...+.|.+|-+|.|.. .+.+..++|. +.|+.+++.-+.+.++-
T Consensus 785 ~~v~a~sih~lrr~~~~~~dq~~sL~alrp~v~~~~~ql~S~tS~L~---dp~~~~eq~ska~~e~~ 848 (856)
T KOG3582|consen 785 GMVSAGSIHALRRTRLNWLDQFCSLPALRPQVLLNLRQLLSSTSILT---DPIKQPEQASKAVTEKI 848 (856)
T ss_pred ceeecchHHHHHHHHHHHhhccccHHHHHHHHHhhHHHhhhhhhccc---CcccchHHHHHHHHhhh
Confidence 34567788999999999999999999999976 6778888888 77888887776666543
No 168
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=27.19 E-value=84 Score=24.29 Aligned_cols=36 Identities=28% Similarity=0.325 Sum_probs=25.9
Q ss_pred HHHHHHHHHhcCCCC--------------CCCChhhHHHHHHHHHHHHHH
Q 045349 28 MKDLISQLASLIPSN--------------SKLSMPQILDDATSYIMHLQK 63 (152)
Q Consensus 28 m~~~~~~LrsllP~~--------------~K~~~~~il~~Ai~YIk~L~~ 63 (152)
.-.+++.|.+-+|.. +|......|+.|++|++.-..
T Consensus 50 ~g~LLy~lAtk~k~~~~~~r~~iv~~I~~gklkt~~Ql~AA~~Yl~~~~~ 99 (164)
T PF04558_consen 50 QGNLLYQLATKLKPQALPHRPFIVKYIVDGKLKTNLQLDAALKYLKSNPS 99 (164)
T ss_dssp HHHHHHHHHHHHTT---TTHHHHHHHHHTTS--SHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 356777777766644 578888999999999998765
No 169
>PRK06291 aspartate kinase; Provisional
Probab=27.01 E-value=3.4e+02 Score=24.09 Aligned_cols=37 Identities=24% Similarity=0.217 Sum_probs=27.3
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
..++.+.+++++|.+.|+.|...+.++.+..+.++|.
T Consensus 333 ~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~ 369 (465)
T PRK06291 333 GVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVD 369 (465)
T ss_pred CCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEe
Confidence 3467899999999999999987765444455555554
No 170
>PF08644 SPT16: FACT complex subunit (SPT16/CDC68); InterPro: IPR013953 Proteins in this entry are subunits the FACT complex; the FACT complex is a stable heterodimer in Saccharomyces cerevisiae (Baker's yeast) comprising Spt16p and Pob3p. The complex plays a role in transcription initiation and promotes binding of TATA-binding protein (TBP) to a TATA box in chromatin []; it also facilitates RNA Polymerase II transcription elongation through nucleosomes by destabilising and then reassembling nucleosome structure [, ]. The proteins in this entry are non-peptidase homologues belonging to MEROPS peptidase family M24 (clan MG).
Probab=26.87 E-value=1.3e+02 Score=23.10 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=23.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 48 PQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
...+.++..-||+|++++..-++++.+..
T Consensus 77 ~~~~~~v~~~Ikel~k~~~~re~E~~e~~ 105 (152)
T PF08644_consen 77 SRHLQEVFRQIKELQKRVKQREQERREKA 105 (152)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33599999999999999998887665443
No 171
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=26.49 E-value=4.1e+02 Score=23.21 Aligned_cols=35 Identities=20% Similarity=0.250 Sum_probs=26.1
Q ss_pred cchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 106 NFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 106 ~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
++.+.+++.+|.++|+.|...+.++.+..+.++|.
T Consensus 315 ~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~ 349 (441)
T TIGR00657 315 PGFLARVFGALAEAGINVDLITQSSSETSISFTVD 349 (441)
T ss_pred ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEE
Confidence 67899999999999999988764333445555554
No 172
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=26.28 E-value=1.3e+02 Score=22.92 Aligned_cols=17 Identities=18% Similarity=0.233 Sum_probs=9.8
Q ss_pred CCCCCCCCCCCCchhhh
Q 045349 1 MAGANSSAAGSSSRAQR 17 (152)
Q Consensus 1 ~~~~~~~~~~~~~~~~h 17 (152)
||++||+++++....+.
T Consensus 1 M~~g~GG~s~~~~~ask 17 (148)
T KOG3304|consen 1 MAQGGGGGSRPALPASK 17 (148)
T ss_pred CCCCCCCCCccccHHHH
Confidence 78877766654333333
No 173
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=26.08 E-value=1.5e+02 Score=18.33 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 50 ILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 50 il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
--+.+-+|+..|.++++.+.++.+.+.
T Consensus 17 FQ~~v~~~lq~Lt~kL~~vs~RLe~LE 43 (47)
T PF10393_consen 17 FQNKVTSALQSLTQKLDAVSKRLEALE 43 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677889999988888888877553
No 174
>TIGR00986 3a0801s05tom22 mitochondrial import receptor subunit Tom22. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tom22 proteins.
Probab=25.87 E-value=46 Score=25.52 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHH
Q 045349 26 MLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHL 61 (152)
Q Consensus 26 ~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L 61 (152)
+-+-+++.+|+..+|+..+....+...-+.+++|.+
T Consensus 49 ETl~ERi~ALkDm~Pp~~R~~i~~~~s~t~s~~ks~ 84 (145)
T TIGR00986 49 ETFTDRIYALKDIVPPTTRGWIYHKYSTTTNFVKST 84 (145)
T ss_pred CcHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 346778999999999987777778888888888876
No 175
>COG4710 Predicted DNA-binding protein with an HTH domain [General function prediction only]
Probab=25.28 E-value=2.1e+02 Score=19.58 Aligned_cols=33 Identities=15% Similarity=0.258 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCCCCCCChhhHHHHHHH-HHHHHHH
Q 045349 27 LMKDLISQLASLIPSNSKLSMPQILDDATS-YIMHLQK 63 (152)
Q Consensus 27 ~m~~~~~~LrsllP~~~K~~~~~il~~Ai~-YIk~L~~ 63 (152)
+|.+++..|.+-. -..++.++.+||+ ||.+++.
T Consensus 15 E~~eRL~~Ls~~t----grtkayyvrEaIE~~ieemED 48 (80)
T COG4710 15 ELKERLDNLSKNT----GRTKAYYVREAIEAYIEEMED 48 (80)
T ss_pred HHHHHHHHHHHhc----CCchhHHHHHHHHHHHHHHHH
Confidence 3555566665543 3567889999995 7776653
No 176
>PF15392 Joubert: Joubert syndrome-associated
Probab=24.78 E-value=65 Score=27.85 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcC
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLI 39 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~Lrsll 39 (152)
.-++..+.|..|+|+++|.+.+..|..+-
T Consensus 54 kERrEIq~WMkRKrkERmaEYl~qlaEkR 82 (329)
T PF15392_consen 54 KERREIQAWMKRKRKERMAEYLKQLAEKR 82 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457788999999999999999887764
No 177
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=24.62 E-value=1.9e+02 Score=21.94 Aligned_cols=47 Identities=17% Similarity=0.274 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 18 NINEKHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 18 ~~~ER~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
...+++-|.++.++-..++++=+ .||=.+|.| |+.++++|+++.+.+
T Consensus 39 ~~~~~~l~~Ei~~l~~E~~~iS~----------qDeFAkwaK-l~Rk~~kl~~el~~~ 85 (161)
T PF04420_consen 39 SKEQRQLRKEILQLKRELNAISA----------QDEFAKWAK-LNRKLDKLEEELEKL 85 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHTTS-T----------TTSHHHHHH-HHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 35667778888888887776622 235556666 677777777766544
No 178
>TIGR01268 Phe4hydrox_tetr phenylalanine-4-hydroxylase, tetrameric form. The member of this family from Drosophila has been described as having both phenylalanine-4-hydroxylase and tryptophan 5-monoxygenase activity (PubMed:1371286). However, a Drosophila member of the tryptophan 5-monoxygenase clade has subsequently been discovered.
Probab=23.69 E-value=2.2e+02 Score=25.63 Aligned_cols=42 Identities=5% Similarity=0.041 Sum_probs=31.8
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe-EEEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDR-VIFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~-v~~ti~~qv~ 144 (152)
.+++|-|.++|..+.++|+++.+..+-+.... --|.|.+.+.
T Consensus 24 ~d~pGaL~~vL~vFa~~gINLthIESRPsk~~~~eY~FFVD~e 66 (436)
T TIGR01268 24 KEEAGALAETLKLFQAHDVNLTHIESRPSKTHPGEYEFFVEFD 66 (436)
T ss_pred CCCCcHHHHHHHHHHHCCCCeeEEecccCCCCCccEEEEEEEe
Confidence 45689999999999999999999998775443 2355555553
No 179
>PRK13702 replication protein; Provisional
Probab=23.42 E-value=2.6e+02 Score=19.55 Aligned_cols=41 Identities=12% Similarity=0.236 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHH--HHHHHHHhcCCCC-----------CCCChhhHHHHHHH
Q 045349 16 QRNINEKHRRMLMK--DLISQLASLIPSN-----------SKLSMPQILDDATS 56 (152)
Q Consensus 16 ~h~~~ER~RR~~m~--~~~~~LrsllP~~-----------~K~~~~~il~~Ai~ 56 (152)
....+||+|.---. .-...|.-+||+. ...+++..|...|+
T Consensus 23 Pls~aErQr~svaRKr~THkei~vfi~n~lK~~L~elc~~~glTQAe~IE~LIe 76 (85)
T PRK13702 23 PLSAAEKQRASVARKRATHKEIKVFIQNPLKDKLMELCEEEGLTQAEMIERLIE 76 (85)
T ss_pred CCCHHHHHHHHHHHHHHhhhhhheeecHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 34579999864333 3366888888876 45666666655543
No 180
>cd01917 ACS_2 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA. ACS forms a heterotetramer with carbon monoxide dehydrogenase (CODH) consisting of two ACS and two CODH subunits. CODH reduces carbon dioxide to carbon monoxide and ACS then synthesizes acetyl-CoA from carbon monoxide, CoA, and a methyl group donated by another protein (CoFeSP). ACS has three structural domains, an N-terminal rossman fold domain with a helical region at its N-terminus which interacts with CODH, and two alpha + beta fold domains. A Ni-Fe-S center referred to as the A-cluster is located in the C-terminal domain. A large cavity exists between the three domains which may bind CoA.
Probab=23.12 E-value=4e+02 Score=22.72 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCceEEEEEeC--------Ceee
Q 045349 25 RMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALLKGDDHTEPSVMNITTSG--------STLE 96 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~~~~~~~~p~V~v~~~g--------~~~~ 96 (152)
...|...+..+|+++|.......+---+.|.-|--+.-+-++.++..+-... .-+...++..+|..| -++-
T Consensus 53 l~dl~~~l~~~r~~~~~~~~l~~al~aG~at~~aaE~iEAl~y~~~~~~~~~-~~~G~i~D~iiR~~GvplV~G~IPGva 131 (287)
T cd01917 53 LGDLKPLLNRLRAQVEEVLTFENARLAGEATLYAAEIIEALRYLKSEPPYKP-PWTGFIGDPIVRGLGIKMVDWTIPGEA 131 (287)
T ss_pred HHHHHHHHHHHHHhcCcccchhHHHHhhHHHHHHHHHHHHHHHhcCCCCccc-cccCCCccHHHHHcCCceecCCCCeEE
Confidence 4678899999999999876666666667777777777777766654321110 001122233333322 2333
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEE
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVT 127 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~ 127 (152)
+.+-|.. ..-.+.+|.+.|.+-++=|.-+-
T Consensus 132 ~ivG~a~-~~e~~~~I~~e~q~r~~lv~l~G 161 (287)
T cd01917 132 VILGRAK-DSKALKKIVDDLMGRGFMLFLCD 161 (287)
T ss_pred EEEecCC-ChHHHHHHHHHHHHCCcEEEEec
Confidence 4444543 33467888898988887666543
No 181
>PHA02148 hypothetical protein
Probab=22.84 E-value=1.9e+02 Score=20.77 Aligned_cols=39 Identities=10% Similarity=0.171 Sum_probs=30.2
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 38 LIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 38 llP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
+=|...+....++=.+|.+..|+|++++..=+...+++.
T Consensus 19 i~P~v~~~~i~~~k~~A~E~FK~iE~RIA~D~~~L~~~A 57 (110)
T PHA02148 19 IEPTVTPLPISDLKVEAFELFKKIEERIAHDQTRLEELA 57 (110)
T ss_pred cCCCCCCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 346667888889999999999999999876655555443
No 182
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=22.83 E-value=1.4e+02 Score=18.38 Aligned_cols=19 Identities=16% Similarity=0.191 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 045349 56 SYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~ 74 (152)
.|+.+|+.++..|+.+...
T Consensus 25 ~~~~~le~~~~~L~~en~~ 43 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQ 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455555555555554443
No 183
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=21.92 E-value=1.6e+02 Score=20.31 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 51 LDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 51 l~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
+..+-+-|-++|.++++|+.++..+.
T Consensus 10 ieK~k~Kiae~Q~rlK~Le~qk~E~E 35 (83)
T PF14193_consen 10 IEKTKEKIAELQARLKELEAQKTEAE 35 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666778889999999998887553
No 184
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase). This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=21.82 E-value=2.5e+02 Score=18.57 Aligned_cols=26 Identities=8% Similarity=0.101 Sum_probs=19.9
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEe
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFN 130 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~ 130 (152)
+.+||.|.+++++|- +.+|.......
T Consensus 9 pD~PG~L~~ll~~l~--~anI~~~~y~~ 34 (85)
T cd04906 9 PERPGSFKKFCELIG--PRNITEFNYRY 34 (85)
T ss_pred CCCCcHHHHHHHHhC--CCceeEEEEEc
Confidence 467899999999998 66777666544
No 185
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=21.57 E-value=1.7e+02 Score=19.96 Aligned_cols=27 Identities=15% Similarity=0.132 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 045349 51 LDDATSYIMHLQKNKESLERKKALLKG 77 (152)
Q Consensus 51 l~~Ai~YIk~L~~~v~~L~~~k~~l~~ 77 (152)
|.+-.+.-.+|++++++|+++.+++..
T Consensus 2 i~ei~eEn~~Lk~eiqkle~ELq~~~~ 28 (76)
T PF07334_consen 2 IHEIQEENARLKEEIQKLEAELQQNKR 28 (76)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567778899999988777765543
No 186
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.56 E-value=3.8e+02 Score=26.49 Aligned_cols=25 Identities=28% Similarity=0.158 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 51 LDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 51 l~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
.+--|.-|.+|++++++++++...+
T Consensus 481 ~e~~isei~qlqarikE~q~kl~~l 505 (1118)
T KOG1029|consen 481 RELMISEIDQLQARIKELQEKLQKL 505 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3445677888888888888765443
No 187
>COG3978 Acetolactate synthase (isozyme II), small (regulatory) subunit [Function unknown]
Probab=21.53 E-value=2.3e+02 Score=19.80 Aligned_cols=30 Identities=7% Similarity=0.050 Sum_probs=26.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
.+|..|-+|+.+.+.-|+.|...+.++.-|
T Consensus 12 ~~pe~leRVLrvtrhRGF~vcamnmt~~~d 41 (86)
T COG3978 12 FNPETLERVLRVTRHRGFRVCAMNMTAAVD 41 (86)
T ss_pred CChHHHHHHHHHhhhcCeEEEEeecccccc
Confidence 468899999999999999999999887644
No 188
>KOG1854 consensus Mitochondrial inner membrane protein (mitofilin) [Cell wall/membrane/envelope biogenesis]
Probab=21.08 E-value=3.1e+02 Score=26.04 Aligned_cols=47 Identities=26% Similarity=0.380 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCC---------CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045349 19 INEKHRRMLMKDLISQLASLIPSN---------SKLSMPQILDDATSYIMHLQKNKESLE 69 (152)
Q Consensus 19 ~~ER~RR~~m~~~~~~LrsllP~~---------~K~~~~~il~~Ai~YIk~L~~~v~~L~ 69 (152)
..|..|++ .-..|.+.+|+. ++.+.-.++..|+-.|.+|+.++++++
T Consensus 283 ~ve~ar~~----F~~EL~si~p~l~~~d~~~~L~~~dln~liahah~rvdql~~~l~d~k 338 (657)
T KOG1854|consen 283 LVEKARHQ----FEQELESILPGLSLADKEENLSEDDLNKLIAHAHTRVDQLQKELEDQK 338 (657)
T ss_pred HHHHHHHH----HHHHHHHhcCCCchhhhhhhccHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555543 335789999955 456666889999999999999998844
No 189
>PRK08210 aspartate kinase I; Reviewed
Probab=20.34 E-value=5.4e+02 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=21.1
Q ss_pred cchHHHHHHHHHHCCcEEEEEEEE
Q 045349 106 NFMFHEIISILEEEAAEVINVTRF 129 (152)
Q Consensus 106 ~~~l~~il~~Le~~gL~Vv~a~~s 129 (152)
++.+.+|+.+|.+.|+.|...+.+
T Consensus 283 ~g~la~If~~L~~~~I~i~~i~~~ 306 (403)
T PRK08210 283 YDLQQEVFKALAEAGISVDFINIF 306 (403)
T ss_pred chHHHHHHHHHHHcCCeEEEEEec
Confidence 688999999999999998887655
No 190
>PRK05771 V-type ATP synthase subunit I; Validated
Probab=20.34 E-value=4.6e+02 Score=24.27 Aligned_cols=21 Identities=14% Similarity=0.282 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCC
Q 045349 22 KHRRMLMKDLISQLASLIPSN 42 (152)
Q Consensus 22 R~RR~~m~~~~~~LrsllP~~ 42 (152)
.++..++++.+..|+...|..
T Consensus 49 ~~~~~~~~~~l~~L~~~~~~~ 69 (646)
T PRK05771 49 RSLLTKLSEALDKLRSYLPKL 69 (646)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 456677888888898887764
No 191
>PF02577 DNase-RNase: Bifunctional nuclease; InterPro: IPR003729 This entry describes proteins of unknown function. The structure has been determined for one member of this group, the hypothetical protein TM0160 from Thermotoga maritima, which was found to consist of a duplication of two beta(3)-alpha(2) structural repeats, forming a single barrel-like beta-sheet [].; PDB: 1SJ5_A 1VJL_A.
Probab=20.32 E-value=2.6e+02 Score=20.45 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred HHHH-HHHHHCCcEEEEEEEEeeCCeEEE-EEEEEE
Q 045349 110 HEII-SILEEEAAEVINVTRFNSGDRVIF-SVQSKV 143 (152)
Q Consensus 110 ~~il-~~Le~~gL~Vv~a~~s~~~~~v~~-ti~~qv 143 (152)
+++| +.|+.+|..|..+.+....+.+|| ++...-
T Consensus 55 hdLl~~~l~~lg~~v~~V~I~~~~dg~f~A~L~l~~ 90 (135)
T PF02577_consen 55 HDLLSDLLEALGAEVERVVIDDLEDGVFYARLVLRQ 90 (135)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred HHHHHHHHHHcCCEEEEEEEEEEECCEEEEEEEEec
Confidence 4444 567889999999999987666554 455543
No 192
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=20.14 E-value=1.1e+02 Score=23.46 Aligned_cols=56 Identities=5% Similarity=0.035 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHh
Q 045349 17 RNINEKHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKA 73 (152)
Q Consensus 17 h~~~ER~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~ 73 (152)
.+.-+...+..+.....+++.++-... ++++...+.=.+|++.++++++++++..+
T Consensus 116 l~~l~~~~~~~~~~i~~~~r~l~~e~~-~d~a~~~~~~~e~~~~~~~~~~~i~~a~~ 171 (174)
T COG1076 116 LKVLGVEIKADQDAIKKAYRKLLSEQH-PDKAAAKGLKLEFIEKLKEKLQEIQEAYE 171 (174)
T ss_pred HHHhcCchhhhHHHHHHHHHHHHHhcC-HHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777777887775543 78888888888999999999999988655
No 193
>PF02370 M: M protein repeat; InterPro: IPR003345 This short repeat is found in multiple copies in bacterial M proteins. The M proteins bind to IgA and are closely associated with virulence. The M protein has been postulated to be a major group A streptococcal (GAS) virulence factor because of its contribution to the bacterial resistance to opsonophagocytosis [].; PDB: 2KK9_A.
Probab=20.03 E-value=1.5e+02 Score=15.38 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 045349 59 MHLQKNKESLERKKAL 74 (152)
Q Consensus 59 k~L~~~v~~L~~~k~~ 74 (152)
|+|+.+.+.|+++++-
T Consensus 4 k~lEa~~qkLe~e~q~ 19 (21)
T PF02370_consen 4 KQLEADHQKLEAEKQI 19 (21)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 6788888888887763
No 194
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=20.01 E-value=1.5e+02 Score=18.72 Aligned_cols=21 Identities=14% Similarity=0.319 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 045349 48 PQILDDATSYIMHLQKNKESL 68 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v~~L 68 (152)
...+.+|+.|++.++.++..|
T Consensus 30 ~~p~~EA~~f~~~ie~qL~~L 50 (52)
T PF03791_consen 30 QRPFQEAMEFCREIEQQLSSL 50 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345779999999999988776
Done!