Query 045349
Match_columns 152
No_of_seqs 132 out of 619
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 21:57:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1am9_A Srebp-1A, protein (ster 99.7 8.9E-18 3E-22 115.6 7.7 65 12-76 5-70 (82)
2 1hlo_A Protein (transcription 99.7 2.7E-17 9.1E-22 112.5 7.3 66 11-76 10-77 (80)
3 1nkp_B MAX protein, MYC proto- 99.7 3.6E-17 1.2E-21 112.5 7.8 63 13-75 2-66 (83)
4 1nlw_A MAD protein, MAX dimeri 99.7 7.6E-17 2.6E-21 110.6 8.9 63 13-75 1-66 (80)
5 1nkp_A C-MYC, MYC proto-oncoge 99.7 2.4E-16 8.1E-21 109.9 7.8 63 13-75 6-71 (88)
6 1a0a_A BHLH, protein (phosphat 99.6 1.4E-16 4.9E-21 104.7 3.6 53 13-65 2-61 (63)
7 1an4_A Protein (upstream stimu 99.6 2.5E-16 8.7E-21 103.5 2.6 55 11-65 3-63 (65)
8 4h10_B Circadian locomoter out 99.6 1.5E-15 5.1E-20 102.0 6.1 60 10-69 5-65 (71)
9 4ati_A MITF, microphthalmia-as 99.6 7.5E-15 2.6E-19 107.3 8.0 62 11-72 25-90 (118)
10 3u5v_A Protein MAX, transcript 99.5 4E-15 1.4E-19 101.1 3.1 58 12-69 4-65 (76)
11 2ql2_B Neurod1, neurogenic dif 99.5 4E-14 1.4E-18 92.1 6.4 55 12-66 1-58 (60)
12 4h10_A ARYL hydrocarbon recept 99.5 1.8E-14 6E-19 97.3 3.5 54 10-63 6-63 (73)
13 1mdy_A Protein (MYOD BHLH doma 99.4 7.1E-14 2.4E-18 93.1 5.0 55 11-65 10-66 (68)
14 4f3l_A Mclock, circadian locom 99.1 1.3E-10 4.3E-15 97.3 6.2 57 8-64 7-64 (361)
15 2lfh_A DNA-binding protein inh 99.1 3.4E-11 1.1E-15 79.9 1.7 46 18-63 19-67 (68)
16 4f3l_B BMAL1B; BHLH, PAS, circ 98.9 6.6E-10 2.3E-14 94.0 5.4 57 7-63 7-67 (387)
17 4aya_A DNA-binding protein inh 98.7 4.2E-08 1.4E-12 69.2 6.4 48 20-67 32-82 (97)
18 4ath_A MITF, microphthalmia-as 98.4 1.3E-06 4.3E-11 59.9 6.9 47 25-71 4-54 (83)
19 1zpv_A ACT domain protein; str 94.5 0.39 1.3E-05 31.2 9.0 49 96-145 7-55 (91)
20 2nyi_A Unknown protein; protei 94.1 0.31 1.1E-05 36.9 8.7 49 95-144 6-54 (195)
21 1u8s_A Glycine cleavage system 93.9 0.36 1.2E-05 36.1 8.7 48 95-143 7-54 (192)
22 2ko1_A CTR148A, GTP pyrophosph 91.4 1.3 4.6E-05 28.1 7.8 41 103-143 13-53 (88)
23 3he4_B Synzip5; heterodimeric 83.2 1.5 5.1E-05 25.6 3.5 27 49-75 3-29 (46)
24 2nyi_A Unknown protein; protei 82.5 4.6 0.00016 30.2 7.2 36 96-132 95-130 (195)
25 2jhe_A Transcription regulator 80.2 5.3 0.00018 28.2 6.5 34 97-131 3-36 (190)
26 3p96_A Phosphoserine phosphata 78.2 7.2 0.00025 32.0 7.5 50 95-145 13-62 (415)
27 1u8s_A Glycine cleavage system 72.9 20 0.00067 26.3 8.1 35 97-132 96-130 (192)
28 2l5g_A GPS2 protein, G protein 66.3 14 0.00046 21.2 4.4 29 47-75 6-34 (38)
29 2oqq_A Transcription factor HY 64.8 6.9 0.00024 23.0 3.1 20 56-75 3-22 (42)
30 1zme_C Proline utilization tra 64.2 6.4 0.00022 24.2 3.2 21 56-76 44-64 (70)
31 1gmj_A ATPase inhibitor; coile 63.5 27 0.00092 23.4 6.3 49 19-75 27-77 (84)
32 2jee_A YIIU; FTSZ, septum, coi 63.4 9.8 0.00033 25.4 4.1 26 50-75 14-39 (81)
33 2er8_A Regulatory protein Leu3 63.1 5.7 0.00019 24.7 2.8 21 56-76 49-69 (72)
34 3obi_A Formyltetrahydrofolate 60.0 33 0.0011 27.5 7.5 47 96-143 8-56 (288)
35 1y7p_A Hypothetical protein AF 59.1 22 0.00075 28.0 6.0 35 97-132 7-41 (223)
36 2f1f_A Acetolactate synthase i 58.8 19 0.00066 26.7 5.5 39 104-142 12-52 (164)
37 2wt7_A Proto-oncogene protein 58.5 30 0.001 21.4 6.3 42 21-75 1-42 (63)
38 3lou_A Formyltetrahydrofolate 58.4 46 0.0016 26.8 8.1 47 96-143 12-60 (292)
39 1dh3_A Transcription factor CR 58.0 10 0.00035 23.2 3.2 20 56-75 22-41 (55)
40 1gd2_E Transcription factor PA 58.0 9.6 0.00033 24.7 3.2 20 55-74 28-47 (70)
41 3n0v_A Formyltetrahydrofolate 57.6 40 0.0014 27.0 7.6 47 96-143 10-58 (286)
42 2pc6_A Probable acetolactate s 56.1 31 0.0011 25.6 6.2 39 104-142 13-53 (165)
43 1xkm_B Distinctin chain B; por 52.6 22 0.00077 18.2 3.4 19 48-66 3-21 (26)
44 3o1l_A Formyltetrahydrofolate 50.9 70 0.0024 25.8 8.1 45 97-142 25-71 (302)
45 1kd8_B GABH BLL, GCN4 acid bas 50.8 15 0.0005 20.9 2.7 18 58-75 3-20 (36)
46 1hwt_C Protein (heme activator 50.8 6.1 0.00021 25.1 1.4 21 55-75 57-77 (81)
47 2fgc_A Acetolactate synthase, 49.9 43 0.0015 25.6 6.2 39 104-142 38-78 (193)
48 3nrb_A Formyltetrahydrofolate 48.5 59 0.002 26.0 7.2 45 96-141 9-55 (287)
49 2wq1_A General control protein 47.8 18 0.00061 20.1 2.7 17 58-74 2-18 (33)
50 2f06_A Conserved hypothetical 46.8 68 0.0023 22.1 7.6 38 103-140 80-117 (144)
51 1pyi_A Protein (pyrimidine pat 45.6 19 0.00063 23.5 3.2 22 56-77 48-69 (96)
52 1pd7_B MAD1; PAH2, SIN3, eukar 44.1 32 0.0011 18.0 3.2 19 45-63 2-20 (26)
53 1jnm_A Proto-oncogene C-JUN; B 43.8 23 0.00077 21.8 3.2 21 55-75 21-41 (62)
54 3coq_A Regulatory protein GAL4 42.0 25 0.00085 22.4 3.3 22 56-77 45-66 (89)
55 2dgc_A Protein (GCN4); basic d 41.7 25 0.00087 21.9 3.2 20 56-75 30-49 (63)
56 1kd8_A GABH AIV, GCN4 acid bas 41.2 17 0.00056 20.6 2.0 17 58-74 3-19 (36)
57 2dtj_A Aspartokinase; protein- 41.0 1E+02 0.0034 22.3 8.2 39 91-129 12-50 (178)
58 3c3g_A Alpha/beta peptide with 40.2 27 0.00094 19.3 2.7 18 58-75 2-19 (33)
59 1m2x_A Class B carbapenemase B 38.8 33 0.0011 25.1 4.0 21 47-67 201-221 (223)
60 2lf0_A Uncharacterized protein 37.3 50 0.0017 23.5 4.5 56 19-74 6-61 (123)
61 1t2k_D Cyclic-AMP-dependent tr 36.6 34 0.0012 20.9 3.2 20 56-75 22-41 (61)
62 2oxj_A Hybrid alpha/beta pepti 35.5 36 0.0012 19.0 2.7 18 58-75 3-20 (34)
63 3k29_A Putative uncharacterize 35.3 83 0.0028 23.6 5.6 55 17-74 41-96 (169)
64 1p3q_Q VPS9P, vacuolar protein 34.9 27 0.00092 21.4 2.4 25 19-43 3-27 (54)
65 2hy6_A General control protein 34.6 25 0.00084 19.6 2.0 18 58-75 3-20 (34)
66 2dt9_A Aspartokinase; protein- 34.4 64 0.0022 23.0 4.9 34 96-129 18-51 (167)
67 3twe_A Alpha4H; unknown functi 33.9 52 0.0018 17.0 3.6 21 53-73 5-25 (27)
68 1e91_A Paired amphipathic heli 33.5 27 0.00091 23.1 2.4 20 47-66 3-22 (85)
69 3m48_A General control protein 31.9 28 0.00096 19.3 1.9 17 59-75 3-19 (33)
70 3luy_A Probable chorismate mut 31.9 2.1E+02 0.0071 23.3 8.4 42 104-145 217-259 (329)
71 1g1e_B SIN3A; four-helix bundl 31.6 32 0.0011 22.9 2.6 18 48-65 7-24 (89)
72 2re1_A Aspartokinase, alpha an 31.5 72 0.0025 22.8 4.8 34 96-129 27-60 (167)
73 3c3f_A Alpha/beta peptide with 31.5 46 0.0016 18.5 2.7 17 58-74 3-19 (34)
74 2jqq_A Conserved oligomeric go 31.2 24 0.00083 27.3 2.1 44 25-69 53-96 (204)
75 2r2v_A GCN4 leucine zipper; co 30.3 49 0.0017 18.4 2.7 17 58-74 3-19 (34)
76 1d66_A Protein (GAL4); protein 29.3 14 0.00048 22.2 0.4 15 55-69 51-65 (66)
77 3d5a_X RF1, peptide chain rele 28.9 2.5E+02 0.0086 23.3 8.6 65 12-76 28-96 (354)
78 2re1_A Aspartokinase, alpha an 28.4 79 0.0027 22.6 4.5 34 105-140 116-149 (167)
79 2ket_A Cathelicidin-6; antimic 27.7 36 0.0012 17.6 1.8 19 23-41 5-23 (27)
80 1uo4_A General control protein 27.7 38 0.0013 18.9 2.0 18 58-75 3-20 (34)
81 2rrl_A FLIK, flagellar HOOK-le 27.0 1.9E+02 0.0067 21.4 8.5 77 55-131 68-153 (169)
82 2bni_A General control protein 26.1 45 0.0015 18.6 2.1 18 58-75 3-20 (34)
83 2czy_A Paired amphipathic heli 25.7 44 0.0015 21.5 2.4 16 51-66 4-19 (77)
84 3mwb_A Prephenate dehydratase; 25.5 1.2E+02 0.004 24.7 5.5 40 104-143 211-251 (313)
85 2qmx_A Prephenate dehydratase; 24.5 1.1E+02 0.0037 24.5 5.0 42 103-144 208-250 (283)
86 1zbt_A RF-1, peptide chain rel 24.5 3E+02 0.01 23.0 7.9 30 47-76 85-114 (371)
87 2wuj_A Septum site-determining 24.3 1E+02 0.0034 18.6 3.7 27 49-75 27-53 (57)
88 1a7t_A Metallo-beta-lactamase; 24.1 73 0.0025 23.4 3.7 29 38-66 202-230 (232)
89 1a93_A Coiled coil, LZ, MYC pr 23.3 62 0.0021 18.0 2.3 19 18-36 16-34 (34)
90 2xze_Q Charged multivesicular 22.6 42 0.0014 19.4 1.6 12 26-37 29-40 (40)
91 2f05_A Paired amphipathic heli 22.5 53 0.0018 22.6 2.4 18 48-65 4-21 (105)
92 3tl4_X Glutaminyl-tRNA synthet 22.3 88 0.003 23.7 3.8 33 29-61 52-98 (187)
93 2f06_A Conserved hypothetical 22.3 1.9E+02 0.0065 19.6 7.3 31 103-133 14-44 (144)
94 2fhx_A SPM-1; metallo-beta-lac 22.1 98 0.0034 22.6 4.1 28 39-66 218-245 (246)
95 3s1t_A Aspartokinase; ACT doma 22.1 2.3E+02 0.0079 20.6 7.6 44 84-127 5-49 (181)
96 2qmw_A PDT, prephenate dehydra 21.5 1.8E+02 0.006 23.0 5.7 39 96-134 188-228 (267)
97 2d0o_B DIOL dehydratase-reacti 20.5 1.6E+02 0.0054 20.9 4.7 29 96-124 9-37 (125)
98 3v86_A De novo design helix; c 20.2 77 0.0026 16.3 2.1 15 57-71 1-15 (27)
99 3muj_A Transcription factor CO 20.1 1.6E+02 0.0055 21.3 4.7 34 28-61 96-133 (138)
100 1ci6_A Transcription factor AT 20.0 1E+02 0.0035 18.9 3.2 16 57-72 24-39 (63)
No 1
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=99.73 E-value=8.9e-18 Score=115.59 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=60.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN-SKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
.++..|+.+||+||..||+.|..|+++||.. .|+|+++||.+||+||++|+++++.|+.+.+.|.
T Consensus 5 ~rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~ 70 (82)
T 1am9_A 5 EKRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLR 70 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688999999999999999999999999998 8999999999999999999999999999877653
No 2
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.70 E-value=2.7e-17 Score=112.50 Aligned_cols=66 Identities=35% Similarity=0.449 Sum_probs=61.6
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
..+|..|+..||+||..||+.|..|+++||.. .|+|+++||..||+||++|++++++|+.+.+.|.
T Consensus 10 ~~~R~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~L~~e~~~L~ 77 (80)
T 1hlo_A 10 ADKRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDLK 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHCcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35689999999999999999999999999987 6999999999999999999999999999988663
No 3
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=99.70 E-value=3.6e-17 Score=112.45 Aligned_cols=63 Identities=35% Similarity=0.445 Sum_probs=58.7
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
+|..||..||+||..||+.|..|+++||.. .|+|+++||..||+||+.|++++++|+.+++.+
T Consensus 2 rR~~hn~~Er~RR~~in~~f~~Lr~lvP~~~~~k~sK~~iL~~Ai~YI~~L~~~~~~l~~e~~~L 66 (83)
T 1nkp_B 2 KRAHHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDIDDL 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999975 899999999999999999999999998877655
No 4
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=99.69 E-value=7.6e-17 Score=110.60 Aligned_cols=63 Identities=25% Similarity=0.323 Sum_probs=58.6
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
+|..||..||+||..||+.|..|+++||.. .|.++++||..|++||++|+++.++|..+++.+
T Consensus 1 ~R~~HN~~ER~RR~~lk~~f~~Lr~~vP~~~~~~k~sk~~iL~kA~~yI~~L~~~~~~l~~e~~~L 66 (80)
T 1nlw_A 1 SRSTHNEMEKNRRAHLRLSLEKLKGLVPLGPDSSRHTTLSLLTKAKLHIKKLEDSDRKAVHQIDQL 66 (80)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSSSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999965 799999999999999999999999999887755
No 5
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=99.66 E-value=2.4e-16 Score=109.87 Aligned_cols=63 Identities=32% Similarity=0.423 Sum_probs=57.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
+|..||..||+||..||+.|..|+++||.. .|+|+++||..||+||+.|+++.+.+..+++.+
T Consensus 6 ~R~~Hn~~ER~RR~~ln~~f~~Lr~~vP~~~~~~K~sK~~iL~~A~~YI~~L~~~~~~l~~~~~~L 71 (88)
T 1nkp_A 6 KRRTHNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEEDLL 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCGGGTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999999999999986 699999999999999999999988877665543
No 6
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1
Probab=99.62 E-value=1.4e-16 Score=104.65 Aligned_cols=53 Identities=34% Similarity=0.465 Sum_probs=49.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHHhcCCCC-------CCCChhhHHHHHHHHHHHHHHHH
Q 045349 13 SRAQRNINEKHRRMLMKDLISQLASLIPSN-------SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 13 ~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-------~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
+|.+|+.+||+||..||..|..|++|||.. +|.+++++|+.||+||++||+++
T Consensus 2 kr~~H~~aEr~RR~rIn~~~~~L~~LlP~~~~~~~~~~k~sKa~iL~~Ai~YIk~Lq~~~ 61 (63)
T 1a0a_A 2 KRESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYIRHLQQNG 61 (63)
T ss_dssp CTTGGGGGTHHHHHHHHHHHHHHHHTSCHHHHTSSCCCCSCTTHHHHHHHHHHHHHHTCS
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCcccccccCCcccHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999954 57899999999999999999865
No 7
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1
Probab=99.60 E-value=2.5e-16 Score=103.55 Aligned_cols=55 Identities=36% Similarity=0.504 Sum_probs=50.7
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCCC------CCChhhHHHHHHHHHHHHHHHH
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSNS------KLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~~------K~~~~~il~~Ai~YIk~L~~~v 65 (152)
..++..|+.+||+||..||+.|..|++|||... |+|+++||..||+||++|+++.
T Consensus 3 ~~rr~~H~~~Er~RR~~in~~~~~L~~lvP~~~~~~~~~k~~Ka~IL~~ai~YI~~Lq~~~ 63 (65)
T 1an4_A 3 EKRRAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSN 63 (65)
T ss_dssp CCCCCSSHHHHHHHHHHHHHHHHHHHHHSCCCCCCSSTTCCCTTTTTTTTHHHHHHHHTTT
T ss_pred HHHHHhhchHHHHHHHHHHHHHHHHHHHCcCcccccccCCCCHHHHHHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999873 7899999999999999999764
No 8
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.59 E-value=1.5e-15 Score=102.01 Aligned_cols=60 Identities=28% Similarity=0.464 Sum_probs=54.9
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045349 10 GSSSRAQRNINEKHRRMLMKDLISQLASLIPSN-SKLSMPQILDDATSYIMHLQKNKESLE 69 (152)
Q Consensus 10 ~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~-~K~~~~~il~~Ai~YIk~L~~~v~~L~ 69 (152)
..++|..|+.+||+||.+||+.|..|++|||.. .|+||++||..||+||+.||+++.=|+
T Consensus 5 ~~~kR~~Hn~iErrRRd~IN~~i~eL~~LvP~~~~K~dK~sIL~~aI~yik~Lq~~~~~~~ 65 (71)
T 4h10_B 5 DKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKEITAWLE 65 (71)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCSCCCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hhHHhhhhhHHHhhHHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHHHHHHHHhhhHHH
Confidence 456789999999999999999999999999975 699999999999999999999886553
No 9
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A
Probab=99.56 E-value=7.5e-15 Score=107.28 Aligned_cols=62 Identities=26% Similarity=0.473 Sum_probs=52.9
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESLERKK 72 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k 72 (152)
..++..|+.+||+||..||+.|..|++|||.. .|+++++||..||+||+.|+++++.|+...
T Consensus 25 ~~kr~~Hn~~ERrRR~~In~~~~~L~~lvP~~~~~~~k~~Ka~IL~~aieYIk~Lq~~~~~l~~~~ 90 (118)
T 4ati_A 25 RQKKDNHNLIERRRRFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDLE 90 (118)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHSCCC----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhccCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999976 489999999999999999999999998754
No 10
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A*
Probab=99.52 E-value=4e-15 Score=101.13 Aligned_cols=58 Identities=22% Similarity=0.311 Sum_probs=48.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCC-ChhhHHHHHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN---SKL-SMPQILDDATSYIMHLQKNKESLE 69 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~-~~~~il~~Ai~YIk~L~~~v~~L~ 69 (152)
.+|..||..||+||..+|+.|..|+.+||.. .|. +|.+||..||+||+.|++.+++++
T Consensus 4 ~rR~~hN~~ER~Rr~~IN~~f~~Lr~~vP~~~~~~K~~sK~~IL~~AieYI~~Lq~~l~e~~ 65 (76)
T 3u5v_A 4 DKRAHHNALERKRRRDINEAFRELGRMCQMHLKSDKAQTKLLILQQAVQVILGLEQQVRERN 65 (76)
T ss_dssp -----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHhhchHHHhhhHHHHHHHHHHHHHHcCCCCCccccccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999952 565 899999999999999999998875
No 11
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus}
Probab=99.50 E-value=4e-14 Score=92.11 Aligned_cols=55 Identities=27% Similarity=0.344 Sum_probs=50.9
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHH
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v~ 66 (152)
++|..||..||+|+..||+.|..||.+||.. .|+||.++|..||+||..|++.++
T Consensus 1 ~rR~~~N~rER~R~~~iN~af~~LR~~lP~~~~~~klSKi~tLr~Ai~YI~~L~~~L~ 58 (60)
T 2ql2_B 1 SRRMKANARERNRMHGLNAALDNLRKVVPCYSKTQKLSKIETLRLAKNYIWALSEILR 58 (60)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCSSSCCCHHHHHHHHHHHHHHHHHHTT
T ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHccCCCCcCcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999976 699999999999999999998763
No 12
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens}
Probab=99.47 E-value=1.8e-14 Score=97.26 Aligned_cols=54 Identities=31% Similarity=0.375 Sum_probs=49.5
Q ss_pred CCCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHH
Q 045349 10 GSSSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQK 63 (152)
Q Consensus 10 ~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~ 63 (152)
-...+..|+.+||+||.+||+.|..|++|||.. .|+||++||..||+||+.|+.
T Consensus 6 ~~~rR~~H~~~ERrRR~rIN~~l~eL~~LvP~~~~~~~KldKasIL~~tV~ylk~l~~ 63 (73)
T 4h10_A 6 IKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 63 (73)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHTCSSCCCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHhc
Confidence 345689999999999999999999999999965 799999999999999999974
No 13
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B*
Probab=99.45 E-value=7.1e-14 Score=93.09 Aligned_cols=55 Identities=25% Similarity=0.324 Sum_probs=50.7
Q ss_pred CCchhhhhHHHHHHHHHHHHHHHHHHhcCCCC--CCCChhhHHHHHHHHHHHHHHHH
Q 045349 11 SSSRAQRNINEKHRRMLMKDLISQLASLIPSN--SKLSMPQILDDATSYIMHLQKNK 65 (152)
Q Consensus 11 ~~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~--~K~~~~~il~~Ai~YIk~L~~~v 65 (152)
...|..||..||+|+..||+.|..||.+||.. .|+||..+|..||+||..|++.+
T Consensus 10 ~~rR~~aN~rER~R~~~iN~af~~LR~~iP~~~~~KlSKi~tLr~Ai~YI~~L~~~L 66 (68)
T 1mdy_A 10 ADRRKAATMRERRRLSKVNEAFETLKRSTSSNPNQRLPKVEILRNAIRYIEGLQALL 66 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhHhhHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999976 79999999999999999999865
No 14
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=99.08 E-value=1.3e-10 Score=97.26 Aligned_cols=57 Identities=25% Similarity=0.457 Sum_probs=42.2
Q ss_pred CCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCC-CCCCCChhhHHHHHHHHHHHHHHH
Q 045349 8 AAGSSSRAQRNINEKHRRMLMKDLISQLASLIP-SNSKLSMPQILDDATSYIMHLQKN 64 (152)
Q Consensus 8 ~~~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP-~~~K~~~~~il~~Ai~YIk~L~~~ 64 (152)
.....+|..|+.+||+||.+||..|..|++||| ...|+||++||..||.||+.++.-
T Consensus 7 ~~~~~~~~~~~~~e~~rr~~~n~~~~~l~~~~p~~~~~~dk~~il~~~~~~~~~~~~~ 64 (361)
T 4f3l_A 7 DKDKAKRVSRNKSEKKRRDQFNVLIKELGSMLPGNARKMDKSTVLQKSIDFLRKHKET 64 (361)
T ss_dssp ------------CHHHHHHHHHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHHHHhh
Confidence 345778999999999999999999999999999 448999999999999999999753
No 15
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.06 E-value=3.4e-11 Score=79.90 Aligned_cols=46 Identities=28% Similarity=0.320 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHH
Q 045349 18 NINEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQK 63 (152)
Q Consensus 18 ~~~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~ 63 (152)
+..||+|+..||+.|..||.+||.. .|+||..+|..||+||..||+
T Consensus 19 ~erER~Rm~~lN~aF~~LR~~VP~~p~~kKLSKiEtLr~Ai~YI~~Lq~ 67 (68)
T 2lfh_A 19 AEEPLSLLDDMNHCYSRLRELVPGVPRGTQLSQVEILQRVIDYILDLQV 67 (68)
T ss_dssp BCCCSCSSSHHHHHHHHHHHHCCCCCTTCCCCHHHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCCCCCccHHHHHHHHHHHHHHHHc
Confidence 4679999999999999999999977 799999999999999999985
No 16
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus}
Probab=98.94 E-value=6.6e-10 Score=93.98 Aligned_cols=57 Identities=30% Similarity=0.355 Sum_probs=49.7
Q ss_pred CCCCCCchhhhhHHHHHHHHHHHHHHHHHHhcCC----CCCCCChhhHHHHHHHHHHHHHH
Q 045349 7 SAAGSSSRAQRNINEKHRRMLMKDLISQLASLIP----SNSKLSMPQILDDATSYIMHLQK 63 (152)
Q Consensus 7 ~~~~~~~~~~h~~~ER~RR~~m~~~~~~LrsllP----~~~K~~~~~il~~Ai~YIk~L~~ 63 (152)
......+|..|+.+||+||.+||..|..|++||| ...|+||++||..||.|||.|+.
T Consensus 7 ~~~~~~~~~~~~~~ek~rR~~~n~~~~~L~~l~p~~~~~~~k~dk~~il~~~~~~l~~~~~ 67 (387)
T 4f3l_B 7 QGRIKNAREAHSQIEKRRRDKMNSFIDELASLVPTCNAMSRKLDKLTVLRMAVQHMKTLRG 67 (387)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHCSSCCCHHHHHHHHHHHHHHHHC
T ss_pred cchhhhhcccccchhhcchHHHHHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHHHhhc
Confidence 3445678999999999999999999999999999 45899999999999999999874
No 17
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=98.67 E-value=4.2e-08 Score=69.19 Aligned_cols=48 Identities=33% Similarity=0.406 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCC---CCCChhhHHHHHHHHHHHHHHHHHH
Q 045349 20 NEKHRRMLMKDLISQLASLIPSN---SKLSMPQILDDATSYIMHLQKNKES 67 (152)
Q Consensus 20 ~ER~RR~~m~~~~~~LrsllP~~---~K~~~~~il~~Ai~YIk~L~~~v~~ 67 (152)
.||+|-..||+.|..||.+||.. .|+||..+|.-||+||..|++-+++
T Consensus 32 ~~r~Rm~~lN~AF~~LR~~vP~~p~~kKLSKIETLRlAi~YI~~Lq~~L~~ 82 (97)
T 4aya_A 32 DPMSLLYNMNDCYSKLKELVPSIPQNKKVSKMEILQHVIDYILDLQIALDS 82 (97)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTSCSSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCCCCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 35888899999999999999975 7999999999999999999998854
No 18
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=98.35 E-value=1.3e-06 Score=59.93 Aligned_cols=47 Identities=28% Similarity=0.479 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHH
Q 045349 25 RMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESLERK 71 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~ 71 (152)
|-.+|+.+..|..|||.. .|++|.+||..|++||++||+..+.+.+.
T Consensus 4 R~nIN~~I~EL~~LiP~~~~~~~k~nKg~IL~ksvdYI~~Lq~e~~r~~e~ 54 (83)
T 4ath_A 4 RFNINDRIKELGTLIPKSNDPDMRWNKGTILKASVDYIRKLQREQQRAKDL 54 (83)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTTCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred hhhHHHhhhhhhccCCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999965 68999999999999999999887776653
No 19
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=94.51 E-value=0.39 Score=31.24 Aligned_cols=49 Identities=2% Similarity=0.001 Sum_probs=38.5
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEcc
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVYI 145 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~~ 145 (152)
.+.+.| .+++|.+.+|..+|.++|.+|.+.+....++..+..+.+.+.+
T Consensus 7 ~l~v~~-~DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~ 55 (91)
T 1zpv_A 7 IITVVG-KDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDE 55 (91)
T ss_dssp EEEEEE-SCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESS
T ss_pred EEEEEE-CCCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCC
Confidence 344444 4789999999999999999999999888777666666666543
No 20
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=94.07 E-value=0.31 Score=36.93 Aligned_cols=49 Identities=16% Similarity=0.099 Sum_probs=39.9
Q ss_pred eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEc
Q 045349 95 LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVY 144 (152)
Q Consensus 95 ~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~ 144 (152)
+.|.+.| ..++|++..|...|.++|++|++++..+..+.++.++.+...
T Consensus 6 ~~ltv~~-~DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~ 54 (195)
T 2nyi_A 6 FVVSVAG-SDRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLN 54 (195)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEES
T ss_pred EEEEEEe-CCCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEec
Confidence 3455555 478999999999999999999999999888887766666543
No 21
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=93.88 E-value=0.36 Score=36.10 Aligned_cols=48 Identities=10% Similarity=0.182 Sum_probs=39.8
Q ss_pred eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 95 LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 95 ~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
+.|.++| .+++|++.+|..+|.++|++|++++..+.++.++.++.+..
T Consensus 7 ~~itv~~-~DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~ 54 (192)
T 1u8s_A 7 LVITAVG-TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEc-CCCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEec
Confidence 3455556 47899999999999999999999999888888777777654
No 22
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=91.39 E-value=1.3 Score=28.12 Aligned_cols=41 Identities=10% Similarity=0.079 Sum_probs=32.6
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKV 143 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv 143 (152)
.+++|.|.+|..+|.+.|++|.+.+....++.....+...+
T Consensus 13 ~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~ 53 (88)
T 2ko1_A 13 EDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFV 53 (88)
T ss_dssp ECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEE
T ss_pred ECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEE
Confidence 46889999999999999999999999876664344455544
No 23
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=83.22 E-value=1.5 Score=25.61 Aligned_cols=27 Identities=22% Similarity=0.409 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 49 QILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 49 ~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
+.+.+--+||++|+++-.+|+.-++.+
T Consensus 3 ntvkelknyiqeleernaelknlkehl 29 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHL 29 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHH
Confidence 346778899999999999998776644
No 24
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=82.52 E-value=4.6 Score=30.25 Aligned_cols=36 Identities=8% Similarity=0.168 Sum_probs=30.6
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
-+.+.| ..++|+++.|-..|-++|++|.+++..+.+
T Consensus 95 iltv~g-~DrpGiva~Vt~~La~~g~nI~~~~~~t~~ 130 (195)
T 2nyi_A 95 ELYVEG-PDSEGIVEAVTAVLAKKGANIVELETETLP 130 (195)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred EEEEEe-CCCcCHHHHHHHHHHHcCCCEEEceeeecc
Confidence 355555 478999999999999999999999988765
No 25
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=80.21 E-value=5.3 Score=28.19 Aligned_cols=34 Identities=12% Similarity=0.236 Sum_probs=29.3
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEee
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNS 131 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~ 131 (152)
+.+.|. ++.|++.+|+.+|.+.++++.++++.+.
T Consensus 3 ~~v~~~-dr~g~l~~i~~~l~~~~~ni~~~~~~~~ 36 (190)
T 2jhe_A 3 LEVFCE-DRLGLTRELLDLLVLRGIDLRGIEIDPI 36 (190)
T ss_dssp EEEEEC-SCTTHHHHHHHHHHHTTCCEEEEEEETT
T ss_pred EEEEEe-cCCcHHHHHHHHHHHcCCCeEEEEEecC
Confidence 455564 6789999999999999999999999775
No 26
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=78.16 E-value=7.2 Score=32.04 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=40.9
Q ss_pred eeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEEEEEcc
Q 045349 95 LEVNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQSKVYI 145 (152)
Q Consensus 95 ~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~~qv~~ 145 (152)
+-+.++| ..++|+...|-..|-++|.+|++++-...++.++-.+.+.+..
T Consensus 13 ~~lt~~g-~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~ 62 (415)
T 3p96_A 13 VLITVTG-VDQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPA 62 (415)
T ss_dssp EEEEEEE-ECCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECH
T ss_pred EEEEEEc-CCCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecC
Confidence 3455555 4789999999999999999999999988888877777776643
No 27
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=72.86 E-value=20 Score=26.32 Aligned_cols=35 Identities=3% Similarity=0.011 Sum_probs=29.3
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
+.+.| ..++|.+.+|...|.++|++|.++...+.+
T Consensus 96 l~v~~-~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~ 130 (192)
T 1u8s_A 96 VYVES-DDKLGLTEKFTQFFAQRQIGMASLSAQTIS 130 (192)
T ss_dssp EEEEE-SCCTTHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred EEEEe-CCCccHHHHHHHHHHHcCCcHHHhhhhccc
Confidence 44445 578999999999999999999999987764
No 28
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=66.31 E-value=14 Score=21.21 Aligned_cols=29 Identities=21% Similarity=0.304 Sum_probs=25.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 47 MPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 47 ~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
....|+++-+-|..|+.+++.|+++|.+|
T Consensus 6 e~mTLeEtkeQi~~l~~kl~~LkeEKHQL 34 (38)
T 2l5g_A 6 ERMSLEETKEQILKLEEKLLALQEEKHQL 34 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678999999999999999999998765
No 29
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=64.79 E-value=6.9 Score=22.99 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.|+-+|+.++++|+.+..+|
T Consensus 3 aYl~eLE~r~k~le~~naeL 22 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSEL 22 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 48888888888888776554
No 30
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=64.21 E-value=6.4 Score=24.21 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 045349 56 SYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l~ 76 (152)
.||..|+++++.|+...+.+.
T Consensus 44 ~~~~~L~~ri~~Le~~l~~l~ 64 (70)
T 1zme_C 44 KYLQQLQKDLNDKTEENNRLK 64 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688889999998888776553
No 31
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=63.45 E-value=27 Score=23.43 Aligned_cols=49 Identities=22% Similarity=0.205 Sum_probs=32.6
Q ss_pred HHHHHH--HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 19 INEKHR--RMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 19 ~~ER~R--R~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
.+.-.+ |++..+.+..||.-+ .+-|..=+.-|++|++.|+..+.+...+
T Consensus 27 aA~Ee~YfrqkekEqL~~LKkkl--------~~el~~h~~ei~~le~~i~rhk~~i~~l 77 (84)
T 1gmj_A 27 QAEEERYFRARAKEQLAALKKHK--------ENEISHHAKEIERLQKEIERHKQSIKKL 77 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444 777888888888655 3446666677777777777776655444
No 32
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=63.37 E-value=9.8 Score=25.43 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 50 ILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 50 il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
-+..|++-|.-||.++++|+.+...+
T Consensus 14 KIq~avdtI~lLqmEieELKekN~~L 39 (81)
T 2jee_A 14 KVQQAIDTITLLQMEIEELKEKNNSL 39 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37899999999999999999887654
No 33
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=63.14 E-value=5.7 Score=24.72 Aligned_cols=21 Identities=19% Similarity=0.131 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhc
Q 045349 56 SYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l~ 76 (152)
.||..|+++|+.|+...+.+.
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887653
No 34
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=59.97 E-value=33 Score=27.51 Aligned_cols=47 Identities=15% Similarity=0.339 Sum_probs=35.2
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN--SGDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~v~~ti~~qv 143 (152)
-+.+.| ..++|.+..|-..|-++|++|++++-.. .++.+|-.+.+.+
T Consensus 8 iLtv~g-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 56 (288)
T 3obi_A 8 VLTLSC-PDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA 56 (288)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc
Confidence 355556 4789999999999999999999998753 3455555555554
No 35
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=59.11 E-value=22 Score=28.00 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=25.2
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEeeC
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNSG 132 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~ 132 (152)
+.+.+ .+++|.|++|+.+|-+++.+|.+.+.....
T Consensus 7 L~I~a-~DRpGLLsDIt~vLAe~kiNIltIn~~~~~ 41 (223)
T 1y7p_A 7 LRIIA-ENKIGVLRDLTTIIAEEGGNITFAQTFLIK 41 (223)
T ss_dssp EEEEE-ECCTTHHHHHHHHCC----CEEEEEEEECC
T ss_pred EEEEE-cCCCCHHHHHHHHHHHcCCCceEEEEEccc
Confidence 33443 368899999999999999999999998864
No 36
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=58.79 E-value=19 Score=26.65 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=31.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
+++|.|.+|...|.+.|++|.+.++.+.. +..-.+|.+.
T Consensus 12 NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~ 52 (164)
T 2f1f_A 12 NESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTV 52 (164)
T ss_dssp CCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEe
Confidence 67899999999999999999999987654 3444555554
No 37
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.51 E-value=30 Score=21.41 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 21 EKHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 21 ER~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
||++|........+-++= ..--.|+..|+.+++.|+.+...|
T Consensus 1 Ekr~rrrerNR~AA~rcR-------------~rKk~~~~~Le~~v~~L~~~n~~L 42 (63)
T 2wt7_A 1 EKRRIRRERNKMAAAKCR-------------NRRRELTDTLQAETDQLEDEKSAL 42 (63)
T ss_dssp CHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555541 123367777777777777665543
No 38
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=58.38 E-value=46 Score=26.77 Aligned_cols=47 Identities=15% Similarity=0.222 Sum_probs=35.0
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN--SGDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~v~~ti~~qv 143 (152)
-+.+.| .+++|.+..|-..|-++|++|++++-.. ..+.+|-.+.+..
T Consensus 12 vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 60 (292)
T 3lou_A 12 VLTLSC-PSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHA 60 (292)
T ss_dssp EEEEEE-ESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred EEEEEc-CCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEc
Confidence 355556 4789999999999999999999999774 3455555444443
No 39
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=58.02 E-value=10 Score=23.19 Aligned_cols=20 Identities=25% Similarity=0.436 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.|+.+|+.+|..|+.+...|
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L 41 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTL 41 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 79999999999998876654
No 40
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=57.97 E-value=9.6 Score=24.65 Aligned_cols=20 Identities=10% Similarity=0.107 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 045349 55 TSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 55 i~YIk~L~~~v~~L~~~k~~ 74 (152)
-.||++|+.+|.+|+...+.
T Consensus 28 ~~~i~~LE~~v~~le~~~~~ 47 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSS 47 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 37899999999988865543
No 41
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=57.63 E-value=40 Score=27.01 Aligned_cols=47 Identities=15% Similarity=0.131 Sum_probs=34.8
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCeEEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN--SGDRVIFSVQSKV 143 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~v~~ti~~qv 143 (152)
-+.+.| .+++|.+..|-..|-++|++|++++..+ ..+.+|-.+.+..
T Consensus 10 vLtv~c-~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 58 (286)
T 3n0v_A 10 ILTADC-PSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQ 58 (286)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEEC
T ss_pred EEEEEe-CCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEec
Confidence 355566 4789999999999999999999999774 3455554444443
No 42
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=56.06 E-value=31 Score=25.57 Aligned_cols=39 Identities=3% Similarity=0.068 Sum_probs=31.2
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeC--CeEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSG--DRVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~--~~v~~ti~~q 142 (152)
+++|.|.+|...|.+.|++|.+.++.+-. +..-.+|.+.
T Consensus 13 NrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~ 53 (165)
T 2pc6_A 13 NEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTN 53 (165)
T ss_dssp CSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEE
T ss_pred CCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEe
Confidence 67999999999999999999999987644 4444555555
No 43
>1xkm_B Distinctin chain B; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=52.64 E-value=22 Score=18.24 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=15.5
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 045349 48 PQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v~ 66 (152)
.+-|-+|-+|+.+|..+++
T Consensus 3 vsgliearkyleqlhrklk 21 (26)
T 1xkm_B 3 VSGLIEARKYLEQLHRKLK 21 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHh
Confidence 4567899999999988775
No 44
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=50.93 E-value=70 Score=25.84 Aligned_cols=45 Identities=7% Similarity=0.194 Sum_probs=34.0
Q ss_pred EEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEee--CCeEEEEEEEE
Q 045349 97 VNLICGLNRNFMFHEIISILEEEAAEVINVTRFNS--GDRVIFSVQSK 142 (152)
Q Consensus 97 V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~--~~~v~~ti~~q 142 (152)
+.+.| ..++|.+..|-..|-++|++|++++-+.. ++.+|-.+.+.
T Consensus 25 Ltv~c-~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~ 71 (302)
T 3o1l_A 25 LVIAC-PDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIR 71 (302)
T ss_dssp EEEEE-ECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEE
T ss_pred EEEEC-CCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEe
Confidence 44555 47899999999999999999999998764 45555444443
No 45
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=50.83 E-value=15 Score=20.85 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+++|+.+|++|-.++..|
T Consensus 3 MnQLE~KVEeLl~~~~~L 20 (36)
T 1kd8_B 3 VKQLKAKVEELKSKLWHL 20 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHHH
Confidence 466777777776665443
No 46
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=50.78 E-value=6.1 Score=25.07 Aligned_cols=21 Identities=19% Similarity=0.287 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 045349 55 TSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 55 i~YIk~L~~~v~~L~~~k~~l 75 (152)
-.||..|+++|+.||.....+
T Consensus 57 ~~~~~~L~~ri~~LE~~l~~l 77 (81)
T 1hwt_C 57 DNELKKLRERVKSLEKTLSKV 77 (81)
T ss_dssp HHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 479999999999999876654
No 47
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=49.94 E-value=43 Score=25.64 Aligned_cols=39 Identities=10% Similarity=0.138 Sum_probs=31.0
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCC--eEEEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGD--RVIFSVQSK 142 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~--~v~~ti~~q 142 (152)
+++|.|.+|...|...|++|.+.++..-.+ ..-.||.+.
T Consensus 38 N~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~ 78 (193)
T 2fgc_A 38 NKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVK 78 (193)
T ss_dssp CCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred CCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEE
Confidence 678999999999999999999999875443 344566554
No 48
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=48.49 E-value=59 Score=26.00 Aligned_cols=45 Identities=18% Similarity=0.397 Sum_probs=32.9
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEEe--eCCeEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRFN--SGDRVIFSVQS 141 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s~--~~~~v~~ti~~ 141 (152)
-+.+.| ..++|....|-..|-++|++|++++-.. .++.+|-.+.+
T Consensus 9 vLtv~c-~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~ 55 (287)
T 3nrb_A 9 VLSLAC-QDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSV 55 (287)
T ss_dssp EEEEEE-ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEE
Confidence 344555 4789999999999999999999998753 34444443433
No 49
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=47.84 E-value=18 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045349 58 IMHLQKNKESLERKKAL 74 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~ 74 (152)
+++|+.+|++|-.++..
T Consensus 2 MnQLEdKVEell~~~~~ 18 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYH 18 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHH
Confidence 45666666666655543
No 50
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=46.77 E-value=68 Score=22.05 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=27.3
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
..++|.+.+++++|.+.|++|.+..++..+++....|.
T Consensus 80 ~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~ 117 (144)
T 2f06_A 80 PNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIR 117 (144)
T ss_dssp ESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEE
T ss_pred CCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEE
Confidence 36789999999999999999966444423455444443
No 51
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=45.55 E-value=19 Score=23.46 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 045349 56 SYIMHLQKNKESLERKKALLKG 77 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l~~ 77 (152)
.|+..|+++++.|+.....+..
T Consensus 48 ~~~~~Le~rl~~le~~l~~~~~ 69 (96)
T 1pyi_A 48 SYVFFLEDRLAVMMRVLKEYGV 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 6999999999999998876644
No 52
>1pd7_B MAD1; PAH2, SIN3, eukaryotic transcriptional regulation, protein-protein interactions; NMR {Mus musculus}
Probab=44.11 E-value=32 Score=18.05 Aligned_cols=19 Identities=21% Similarity=0.254 Sum_probs=14.6
Q ss_pred CChhhHHHHHHHHHHHHHH
Q 045349 45 LSMPQILDDATSYIMHLQK 63 (152)
Q Consensus 45 ~~~~~il~~Ai~YIk~L~~ 63 (152)
+....+|-+|.+|+...+.
T Consensus 2 ~~nvq~LLeAAeyLErrEr 20 (26)
T 1pd7_B 2 RMNIQMLLEAADYLERRER 20 (26)
T ss_dssp CCSTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 3456789999999987665
No 53
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=43.79 E-value=23 Score=21.84 Aligned_cols=21 Identities=19% Similarity=0.302 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhh
Q 045349 55 TSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 55 i~YIk~L~~~v~~L~~~k~~l 75 (152)
-.|+.+|+.+++.|+.+.+.|
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L 41 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSEL 41 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 367777887777777766544
No 54
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.96 E-value=25 Score=22.35 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcc
Q 045349 56 SYIMHLQKNKESLERKKALLKG 77 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l~~ 77 (152)
.|+..|+++++.|+.....+..
T Consensus 45 ~~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 45 AHLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 6999999999999998877643
No 55
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=41.66 E-value=25 Score=21.93 Aligned_cols=20 Identities=25% Similarity=0.247 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.|+.+|+.+++.|+.+...|
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L 49 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67888888888887766544
No 56
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=41.24 E-value=17 Score=20.62 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045349 58 IMHLQKNKESLERKKAL 74 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~ 74 (152)
+++|+.+|++|..++..
T Consensus 3 MnQLE~kVEeLl~~~~~ 19 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWH 19 (36)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHH
Confidence 35566666666655543
No 57
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=41.03 E-value=1e+02 Score=22.35 Aligned_cols=39 Identities=10% Similarity=0.035 Sum_probs=25.1
Q ss_pred eCCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE
Q 045349 91 SGSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVTRF 129 (152)
Q Consensus 91 ~g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s 129 (152)
..+...|.+....++++.+.+|++.|.+.|++|-..+.+
T Consensus 12 ~~~~~~Itv~~~~~~~G~~a~if~~La~~~InId~i~~s 50 (178)
T 2dtj_A 12 DKSEAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQN 50 (178)
T ss_dssp ECSEEEEEEEEEECSTTHHHHHHHHHHHTTCCCCEEEEC
T ss_pred cCCEEEEEEecCCCCccHHHHHHHHHHHcCCCEEEEEcC
Confidence 333334544322456788999999999999555554443
No 58
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.22 E-value=27 Score=19.33 Aligned_cols=18 Identities=6% Similarity=0.087 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+++|+.+|++|-.++..|
T Consensus 2 MnQLEdKvEeLl~~~~~L 19 (33)
T 3c3g_A 2 MKXIEXKLXEIXSKXYHX 19 (33)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhHH
Confidence 456777777776665543
No 59
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold., hydrolase; HET: MCO; 1.50A {Elizabethkingia meningoseptica} SCOP: d.157.1.1
Probab=38.84 E-value=33 Score=25.07 Aligned_cols=21 Identities=10% Similarity=0.183 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHH
Q 045349 47 MPQILDDATSYIMHLQKNKES 67 (152)
Q Consensus 47 ~~~il~~Ai~YIk~L~~~v~~ 67 (152)
..+.+..+..|++.+++++++
T Consensus 201 ~~~~l~~~~~~l~~~~~~~~~ 221 (223)
T 1m2x_A 201 DQRSIQHTLDLINEYQQKQKA 221 (223)
T ss_dssp STTHHHHHHHHHHHHHHTC--
T ss_pred CHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999988753
No 60
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=37.26 E-value=50 Score=23.55 Aligned_cols=56 Identities=11% Similarity=0.034 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 19 INEKHRRMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 19 ~~ER~RR~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
..|++==+++++++..++.=++.......+.++.+-.+-|..|..+|..|..+...
T Consensus 6 e~~K~Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 6 EVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566678899999999998888877777888999889999999999998876653
No 61
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=36.56 E-value=34 Score=20.86 Aligned_cols=20 Identities=25% Similarity=0.401 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHhhh
Q 045349 56 SYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 56 ~YIk~L~~~v~~L~~~k~~l 75 (152)
.|+..|+.+++.|+.+...|
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L 41 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQL 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 57777777777777665543
No 62
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=35.47 E-value=36 Score=18.97 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+.+|+.+|++|-.+++.|
T Consensus 3 MnQLE~kVEeLl~~n~~L 20 (34)
T 2oxj_A 3 MXQLEXKVXELLXKNXHL 20 (34)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhH
Confidence 456777777776665544
No 63
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=35.25 E-value=83 Score=23.65 Aligned_cols=55 Identities=15% Similarity=0.095 Sum_probs=38.7
Q ss_pred hhHHHHHHHH-HHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045349 17 RNINEKHRRM-LMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLERKKAL 74 (152)
Q Consensus 17 h~~~ER~RR~-~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~ 74 (152)
....||+++. +-.+.+..||..+- +...++-+...=.||+-|.+++..++.+.+.
T Consensus 41 ~~e~~r~k~~~h~~~k~~qlre~~d---~gtt~~~i~~m~~yI~llrErea~lEqkVae 96 (169)
T 3k29_A 41 ERESERDKVKNHYMQKIRQLREQLD---DGTTSDAILKMKAYIKVVAIQLSEEEEKVNK 96 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH---HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666654 23445778888774 4555566888889999999999999977543
No 64
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=34.86 E-value=27 Score=21.45 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCC
Q 045349 19 INEKHRRMLMKDLISQLASLIPSNS 43 (152)
Q Consensus 19 ~~ER~RR~~m~~~~~~LrsllP~~~ 43 (152)
.++|-+|.+.++-+.+|.+.-|+.+
T Consensus 3 ~a~~i~~~e~~~~~~~L~~MFP~lD 27 (54)
T 1p3q_Q 3 LIKKIEENERKDTLNTLQNMFPDMD 27 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCC
Confidence 4788899999999999999999873
No 65
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=34.60 E-value=25 Score=19.65 Aligned_cols=18 Identities=22% Similarity=0.244 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+++|+.+|++|-.++..|
T Consensus 3 MnQLEdkVEeLl~~~~~L 20 (34)
T 2hy6_A 3 VKQLADAVEELASANYHL 20 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 356666676666655443
No 66
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=34.45 E-value=64 Score=23.05 Aligned_cols=34 Identities=15% Similarity=0.100 Sum_probs=23.7
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRF 129 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s 129 (152)
.|.+..-.++++.+.+++.+|.+.|++|...+.+
T Consensus 18 ~Itv~g~~~~~G~~a~if~~La~~~InVd~I~q~ 51 (167)
T 2dt9_A 18 QIGLIGIPDQPGIAAKVFQALAERGIAVDMIIQG 51 (167)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCSCEEBC
T ss_pred EEEEecCCCCCCHHHHHHHHHHHcCCcEEEEEcC
Confidence 3444322356788999999999999887665443
No 67
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=33.89 E-value=52 Score=16.98 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 045349 53 DATSYIMHLQKNKESLERKKA 73 (152)
Q Consensus 53 ~Ai~YIk~L~~~v~~L~~~k~ 73 (152)
+--+-+.+||+++.+|..+..
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334556778888888876643
No 68
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=33.52 E-value=27 Score=23.06 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.2
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 045349 47 MPQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 47 ~~~il~~Ai~YIk~L~~~v~ 66 (152)
.+-.+++|++|++.++.+-+
T Consensus 3 ~~~~~~~A~~yv~kVK~rF~ 22 (85)
T 1e91_A 3 DSVEFNNAISYVNKIKTRFL 22 (85)
T ss_dssp SCHHHHHHHHHHHHHHHHTS
T ss_pred CCccHHHHHHHHHHHHHHHh
Confidence 34568999999999998853
No 69
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=31.91 E-value=28 Score=19.30 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHhhh
Q 045349 59 MHLQKNKESLERKKALL 75 (152)
Q Consensus 59 k~L~~~v~~L~~~k~~l 75 (152)
.+|+.+|++|-.++..|
T Consensus 3 ~QLE~kVEeLl~~n~~L 19 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNL 19 (33)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhHHH
Confidence 45666666666555443
No 70
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=31.89 E-value=2.1e+02 Score=23.34 Aligned_cols=42 Identities=5% Similarity=0.073 Sum_probs=35.0
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEE-EEEEEEEcc
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVI-FSVQSKVYI 145 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~-~ti~~qv~~ 145 (152)
+++|-|+++|..|...|++...-.+-+..+... |.|.+.+.+
T Consensus 217 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~eg 259 (329)
T 3luy_A 217 TGPGVLANLLDVFRDAGLNMTSFISRPIKGRTGTYSFIVTLDA 259 (329)
T ss_dssp CSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEEEEESS
T ss_pred CCCCHHHHHHHHHHHCCcceEEEEeeECCCCCccEEEEEEEeC
Confidence 468999999999999999999999988877654 666666654
No 71
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=31.57 E-value=32 Score=22.90 Aligned_cols=18 Identities=17% Similarity=0.410 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 045349 48 PQILDDATSYIMHLQKNK 65 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v 65 (152)
+-.+++|++|++.++.+-
T Consensus 7 ~~~~~~A~~YvnkVK~rF 24 (89)
T 1g1e_B 7 PVEFNHAINYVNKIKNRF 24 (89)
T ss_dssp THHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 345899999999999884
No 72
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=31.47 E-value=72 Score=22.81 Aligned_cols=34 Identities=12% Similarity=0.085 Sum_probs=24.1
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEEEEEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVINVTRF 129 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~~s 129 (152)
.|.+..-.++++.+.+|+..|.++|+.|...+.+
T Consensus 27 ~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~s 60 (167)
T 2re1_A 27 RINVRGVPDKPGVAYQILGAVADANIEVDMIIQN 60 (167)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEEC
T ss_pred EEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEcC
Confidence 4444421356788999999999999887766543
No 73
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=31.46 E-value=46 Score=18.52 Aligned_cols=17 Identities=6% Similarity=0.022 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045349 58 IMHLQKNKESLERKKAL 74 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~ 74 (152)
+.+|+.+|++|-.++..
T Consensus 3 MnQLEdKVEeLl~~~~~ 19 (34)
T 3c3f_A 3 MXQIEXKLEXILSXLYH 19 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhH
Confidence 45666666666555543
No 74
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=31.20 E-value=24 Score=27.31 Aligned_cols=44 Identities=23% Similarity=0.369 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhcCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Q 045349 25 RMLMKDLISQLASLIPSNSKLSMPQILDDATSYIMHLQKNKESLE 69 (152)
Q Consensus 25 R~~m~~~~~~LrsllP~~~K~~~~~il~~Ai~YIk~L~~~v~~L~ 69 (152)
|..++....+||.|.-.. =....+++.+|++|.|.|.+-...|+
T Consensus 53 ~~Dl~~F~~QL~qL~~~~-i~~Tre~v~d~l~YLkkLD~l~~~Lq 96 (204)
T 2jqq_A 53 QSDLQKFMTQLDHLIKDD-ISNTQEIIKDVLEYLKKLDEIYGSLR 96 (204)
T ss_dssp HHHHHHHHHHHHHHHHHS-CSTTHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888887443 33456789999999999977665554
No 75
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=30.30 E-value=49 Score=18.42 Aligned_cols=17 Identities=12% Similarity=0.116 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHhh
Q 045349 58 IMHLQKNKESLERKKAL 74 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~ 74 (152)
+++|+.+|++|-.++..
T Consensus 3 MnQledKvEel~~~~~~ 19 (34)
T 2r2v_A 3 LKQVADKLEEVASKLYH 19 (34)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhHH
Confidence 45666666666655543
No 76
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=29.26 E-value=14 Score=22.17 Aligned_cols=15 Identities=20% Similarity=0.315 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHH
Q 045349 55 TSYIMHLQKNKESLE 69 (152)
Q Consensus 55 i~YIk~L~~~v~~L~ 69 (152)
..|+..|+++|+.||
T Consensus 51 ~~~~~~Le~rl~~LE 65 (66)
T 1d66_A 51 RAHLTEVESRLERLE 65 (66)
T ss_dssp HHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHc
Confidence 479999999998775
No 77
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=28.90 E-value=2.5e+02 Score=23.33 Aligned_cols=65 Identities=20% Similarity=0.112 Sum_probs=39.3
Q ss_pred CchhhhhHHHHHHHHHHHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 12 SSRAQRNINEKHRRMLMKDLISQLASLIPSN----SKLSMPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 12 ~~~~~h~~~ER~RR~~m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
..+......|...=+..-+.|..+...+-.. .=...++...+|-.-++.|++++++|+.+...+.
T Consensus 28 ~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~~~~~le~~l~~lL 96 (354)
T 3d5a_X 28 KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLARKEALEKELERHL 96 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444555555544444444444333222 0011467889999999999999999998766544
No 78
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=28.39 E-value=79 Score=22.58 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=25.9
Q ss_pred CcchHHHHHHHHHHCCcEEEEEEEEeeCCeEEEEEE
Q 045349 105 RNFMFHEIISILEEEAAEVINVTRFNSGDRVIFSVQ 140 (152)
Q Consensus 105 ~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~~ti~ 140 (152)
.+|.+.+++++|.+.|+.|...+ +....+.+.|.
T Consensus 116 ~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~ 149 (167)
T 2re1_A 116 HVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLID 149 (167)
T ss_dssp CCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEE
T ss_pred CcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEe
Confidence 67999999999999999998754 44555555443
No 79
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=27.69 E-value=36 Score=17.58 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHhcCCC
Q 045349 23 HRRMLMKDLISQLASLIPS 41 (152)
Q Consensus 23 ~RR~~m~~~~~~LrsllP~ 41 (152)
+=|++.+.+|..|.-++|-
T Consensus 5 rfrkkfkklfkklspvipl 23 (27)
T 2ket_A 5 RFRKKFKKLFKKLSPVIPL 23 (27)
T ss_dssp HHHHHHHHHHHHHSCSCHH
T ss_pred HHHHHHHHHHHhcCcccch
Confidence 4478899999999888873
No 80
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=27.68 E-value=38 Score=18.89 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+++|+.+|++|-.++..+
T Consensus 3 M~QLEdKVEeLl~~n~~L 20 (34)
T 1uo4_A 3 MKQIEDKGEEILSKLYHI 20 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHH
Confidence 456777777766655443
No 81
>2rrl_A FLIK, flagellar HOOK-length control protein; FLHB, bacterial flagella motor, P transport; NMR {Salmonella typhimurium}
Probab=27.00 E-value=1.9e+02 Score=21.43 Aligned_cols=77 Identities=6% Similarity=0.075 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCC-CC---CCceEEEEEeCCeeeEEEEecCC--C---cchHHHHHHHHHHCCcEEEE
Q 045349 55 TSYIMHLQKNKESLERKKALLKGDD-HT---EPSVMNITTSGSTLEVNLICGLN--R---NFMFHEIISILEEEAAEVIN 125 (152)
Q Consensus 55 i~YIk~L~~~v~~L~~~k~~l~~~~-~~---~~p~V~v~~~g~~~~V~~~~~~~--~---~~~l~~il~~Le~~gL~Vv~ 125 (152)
..|..+|-++|..+-.....-.... +| ..-.|.++..++.+.|.++.... + +.-+.++=+.|++.||.+..
T Consensus 68 ~~w~qqL~qqI~~~~~~g~q~a~IrL~PpeLG~l~V~l~~~~~q~~v~f~a~~~~vReaLe~~lp~LRe~La~qGi~L~~ 147 (169)
T 2rrl_A 68 HEWQQTFSQQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPMLRTQLAESGIQLGQ 147 (169)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEECCSSGGGCCEEEEEEEETTEEEEEEECCSSHHHHHHHHTHHHHHHHHHTTTCEEEE
T ss_pred HHHHHHHHHHHHHHHhCCceEEEEEECccccCcEEEEEEEECCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHHcCCCeee
Confidence 3777788888766644332111111 11 12256677788888888877532 1 23477888999999999999
Q ss_pred EEEEee
Q 045349 126 VTRFNS 131 (152)
Q Consensus 126 a~~s~~ 131 (152)
++++.-
T Consensus 148 v~Vs~~ 153 (169)
T 2rrl_A 148 SSISSE 153 (169)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 999763
No 82
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=26.14 E-value=45 Score=18.59 Aligned_cols=18 Identities=11% Similarity=0.220 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 045349 58 IMHLQKNKESLERKKALL 75 (152)
Q Consensus 58 Ik~L~~~v~~L~~~k~~l 75 (152)
+++|+.+|++|-.++..+
T Consensus 3 MnQLEdKvEeLl~~~~~L 20 (34)
T 2bni_A 3 MKQIEDKLEEILSKGHHI 20 (34)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHccHHH
Confidence 456777777776665443
No 83
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=25.71 E-value=44 Score=21.47 Aligned_cols=16 Identities=19% Similarity=0.376 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045349 51 LDDATSYIMHLQKNKE 66 (152)
Q Consensus 51 l~~Ai~YIk~L~~~v~ 66 (152)
+++|++|++.++++-+
T Consensus 4 ~~dA~~yl~~VK~~F~ 19 (77)
T 2czy_A 4 VEDALTYLDQVKIRFG 19 (77)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHc
Confidence 7899999999998864
No 84
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=25.54 E-value=1.2e+02 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.125 Sum_probs=31.1
Q ss_pred CCcchHHHHHHHHHHCCcEEEEEEEEeeCCeEE-EEEEEEE
Q 045349 104 NRNFMFHEIISILEEEAAEVINVTRFNSGDRVI-FSVQSKV 143 (152)
Q Consensus 104 ~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v~-~ti~~qv 143 (152)
+++|-|+++|..|...|++...-.+-+..+... |.|.+.+
T Consensus 211 ~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfiD~ 251 (313)
T 3mwb_A 211 DHPGALMEILDQFASRGVNLSRIESRPTGQYLGHYFFSIDA 251 (313)
T ss_dssp CCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTSEEEEEEE
T ss_pred CCCCHHHHHHHHHHHCCccEEEEEEeecCCCCccEEEEEEE
Confidence 578999999999999999999999987665432 4444444
No 85
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=24.50 E-value=1.1e+02 Score=24.47 Aligned_cols=42 Identities=5% Similarity=0.063 Sum_probs=33.0
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCCeE-EEEEEEEEc
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGDRV-IFSVQSKVY 144 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~v-~~ti~~qv~ 144 (152)
.+++|-|+++|..|...|++...-.+-+..+.. -|.|.+.+.
T Consensus 208 ~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~~~Y~FfvD~e 250 (283)
T 2qmx_A 208 PNEQGSLFRALATFALRGIDLTKIESRPSRKKAFEYLFYADFI 250 (283)
T ss_dssp ECCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTEEEEEEEEE
T ss_pred CCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCCcceEEEEEEe
Confidence 367899999999999999999999998876542 355555544
No 86
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=24.48 E-value=3e+02 Score=22.99 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=24.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045349 47 MPQILDDATSYIMHLQKNKESLERKKALLK 76 (152)
Q Consensus 47 ~~~il~~Ai~YIk~L~~~v~~L~~~k~~l~ 76 (152)
.++...+|-+-++.|++++++|+.+...+.
T Consensus 85 D~e~~~~a~~e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 85 DPELEEMAKEELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467889999999999999999998766554
No 87
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=24.25 E-value=1e+02 Score=18.62 Aligned_cols=27 Identities=22% Similarity=0.199 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045349 49 QILDDATSYIMHLQKNKESLERKKALL 75 (152)
Q Consensus 49 ~il~~Ai~YIk~L~~~v~~L~~~k~~l 75 (152)
.-|++.+.-+..|.+++++|+.+.+.+
T Consensus 27 ~FLd~v~~~~~~l~~e~~~L~~~~~~l 53 (57)
T 2wuj_A 27 EFLAQVRKDYEIVLRKKTELEAKVNEL 53 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888888888877654
No 88
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES; 1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB: 1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A 1hlk_A*
Probab=24.10 E-value=73 Score=23.36 Aligned_cols=29 Identities=3% Similarity=0.295 Sum_probs=20.5
Q ss_pred cCCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 045349 38 LIPSNSKLSMPQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 38 llP~~~K~~~~~il~~Ai~YIk~L~~~v~ 66 (152)
++|........+.+..+.+|++.+++++.
T Consensus 202 v~pgHg~~~~~~~~~~~~~~l~~~~~~~~ 230 (232)
T 1a7t_A 202 VVPGHGNYGGTELIEHTKQIVNQYIESTS 230 (232)
T ss_dssp EEESSSCCBCTHHHHHHHHHHHHHHHHHC
T ss_pred EECCCCCcccHHHHHHHHHHHHHHHHHhc
Confidence 34444444345789999999999988764
No 89
>1a93_A Coiled coil, LZ, MYC proto-oncogene protein; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Homo sapiens} SCOP: h.1.3.1 PDB: 2a93_A
Probab=23.26 E-value=62 Score=18.01 Aligned_cols=19 Identities=26% Similarity=0.244 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 045349 18 NINEKHRRMLMKDLISQLA 36 (152)
Q Consensus 18 ~~~ER~RR~~m~~~~~~Lr 36 (152)
+..+|+|+.++...+..|+
T Consensus 16 kE~l~~r~eqL~~kLe~L~ 34 (34)
T 1a93_A 16 EDLLRKRREQLKHKLEQLX 34 (34)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcC
Confidence 4677889999988887764
No 90
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=22.58 E-value=42 Score=19.39 Aligned_cols=12 Identities=25% Similarity=0.290 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHh
Q 045349 26 MLMKDLISQLAS 37 (152)
Q Consensus 26 ~~m~~~~~~Lrs 37 (152)
..|..+|.+|||
T Consensus 29 ~~MqsRLaALRS 40 (40)
T 2xze_Q 29 EAMQSRLATLRS 40 (40)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHhcC
Confidence 569999999986
No 91
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.46 E-value=53 Score=22.58 Aligned_cols=18 Identities=17% Similarity=0.322 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 045349 48 PQILDDATSYIMHLQKNK 65 (152)
Q Consensus 48 ~~il~~Ai~YIk~L~~~v 65 (152)
+--+++|++|++.++.+-
T Consensus 4 ~~~~~dA~~YvnkVK~rF 21 (105)
T 2f05_A 4 SVEFNNAISYVNKIKTRF 21 (105)
T ss_dssp CHHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHHHH
Confidence 345899999999999884
No 92
>3tl4_X Glutaminyl-tRNA synthetase; glutamine, appended domain, hinge, tRNA LIG amidotransferase, ligase; 2.30A {Saccharomyces cerevisiae}
Probab=22.29 E-value=88 Score=23.65 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCCC--------------CCCChhhHHHHHHHHHHHH
Q 045349 29 KDLISQLASLIPSN--------------SKLSMPQILDDATSYIMHL 61 (152)
Q Consensus 29 ~~~~~~LrsllP~~--------------~K~~~~~il~~Ai~YIk~L 61 (152)
..+++.|.+-+|.. +|......|+.|++|++..
T Consensus 52 g~LLy~latk~k~~~~~~r~~l~~~I~~gklkt~~Qv~AAl~yl~~~ 98 (187)
T 3tl4_X 52 RALVHNLASFVKGTDLPKSELIVNGIINGDLKTSLQVDAAFKYVKAN 98 (187)
T ss_dssp HHHHHHHHHHHTTCCCTTHHHHHHHHHTTSCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCccchhHHHHHHHHHhccCCcHHHHHHHHHHHHhC
Confidence 45677777766542 5888889999999999874
No 93
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=22.26 E-value=1.9e+02 Score=19.64 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=25.0
Q ss_pred CCCcchHHHHHHHHHHCCcEEEEEEEEeeCC
Q 045349 103 LNRNFMFHEIISILEEEAAEVINVTRFNSGD 133 (152)
Q Consensus 103 ~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~ 133 (152)
.+++|.+.++...|.+.|++|-..+.....+
T Consensus 14 ~d~~G~l~~i~~~la~~~inI~~i~~~~~~~ 44 (144)
T 2f06_A 14 ENKSGRLTEVTEVLAKENINLSALCIAENAD 44 (144)
T ss_dssp CSSSSHHHHHHHHHHHTTCCEEEEEEEECSS
T ss_pred cCCCcHHHHHHHHHHHCCCCEEEEEEEecCC
Confidence 3678999999999999999998876654333
No 94
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc hydrolase, metal binding protein; 1.90A {Pseudomonas aeruginosa}
Probab=22.14 E-value=98 Score=22.62 Aligned_cols=28 Identities=11% Similarity=0.242 Sum_probs=20.3
Q ss_pred CCCCCCCChhhHHHHHHHHHHHHHHHHH
Q 045349 39 IPSNSKLSMPQILDDATSYIMHLQKNKE 66 (152)
Q Consensus 39 lP~~~K~~~~~il~~Ai~YIk~L~~~v~ 66 (152)
+|..+..-..+.+.++++|++.|.+++.
T Consensus 218 ~pgHg~~~~~~~l~~~~~~l~~l~~~v~ 245 (246)
T 2fhx_A 218 IPGHGEWGGPEMVNKTIKVAEKAVGEMR 245 (246)
T ss_dssp EESBSCCBSTHHHHHHHHHHHHHHHHHT
T ss_pred ECCCCCcCCHHHHHHHHHHHHHHHHHhc
Confidence 3433443346889999999999998873
No 95
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=22.11 E-value=2.3e+02 Score=20.56 Aligned_cols=44 Identities=7% Similarity=0.093 Sum_probs=27.6
Q ss_pred ceEE-EEEeCCeeeEEEEecCCCcchHHHHHHHHHHCCcEEEEEE
Q 045349 84 SVMN-ITTSGSTLEVNLICGLNRNFMFHEIISILEEEAAEVINVT 127 (152)
Q Consensus 84 p~V~-v~~~g~~~~V~~~~~~~~~~~l~~il~~Le~~gL~Vv~a~ 127 (152)
|.|+ |....+...|.+..-...++.+.+|+..|.+.|+.|...+
T Consensus 5 ~~V~gIa~~~~~~~Iti~~~~~~~G~~a~If~~La~~~I~vd~I~ 49 (181)
T 3s1t_A 5 PILTGVAHDRSEAKVTIVGLPDIPGYAAKVFRAVADADVNIDMVL 49 (181)
T ss_dssp CEEEEEEEECSEEEEEEEEEESSTTHHHHHHHHHHHTTCCCCCEE
T ss_pred CcEEEEEecCCEEEEEEecCCCCcCHHHHHHHHHHHcCCcEEEEE
Confidence 4444 3333333334443223567889999999999998876554
No 96
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=21.47 E-value=1.8e+02 Score=23.02 Aligned_cols=39 Identities=0% Similarity=-0.033 Sum_probs=31.1
Q ss_pred eEEEEe--cCCCcchHHHHHHHHHHCCcEEEEEEEEeeCCe
Q 045349 96 EVNLIC--GLNRNFMFHEIISILEEEAAEVINVTRFNSGDR 134 (152)
Q Consensus 96 ~V~~~~--~~~~~~~l~~il~~Le~~gL~Vv~a~~s~~~~~ 134 (152)
.+.+.. ..+++|-|+++|..|...|++...-.+-+..+.
T Consensus 188 sl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~ 228 (267)
T 2qmw_A 188 SLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQ 228 (267)
T ss_dssp EEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSS
T ss_pred EEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCC
Confidence 344444 246789999999999999999999999877654
No 97
>2d0o_B DIOL dehydratase-reactivating factor small subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.51.3.2 PDB: 2d0p_B
Probab=20.50 E-value=1.6e+02 Score=20.87 Aligned_cols=29 Identities=14% Similarity=0.139 Sum_probs=22.8
Q ss_pred eEEEEecCCCcchHHHHHHHHHHCCcEEE
Q 045349 96 EVNLICGLNRNFMFHEIISILEEEAAEVI 124 (152)
Q Consensus 96 ~V~~~~~~~~~~~l~~il~~Le~~gL~Vv 124 (152)
.|++.+.......|..|+.-+||+|+...
T Consensus 9 aI~i~~~~~~~~~l~evl~GIEEEGip~~ 37 (125)
T 2d0o_B 9 AIAIAVIDGCDGLWREVLLGIEEEGIPFR 37 (125)
T ss_dssp CEEEEEETTCGGGGHHHHHHHHHTTCCEE
T ss_pred EEEEEeCCCcHHHHHHHHhhhcccCCCeE
Confidence 36666655556789999999999998877
No 98
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=20.24 E-value=77 Score=16.31 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHH
Q 045349 57 YIMHLQKNKESLERK 71 (152)
Q Consensus 57 YIk~L~~~v~~L~~~ 71 (152)
|+-+|+.++-+|+.+
T Consensus 1 yvyqlkdevgelkge 15 (27)
T 3v86_A 1 YVYQLKDEVGELKGE 15 (27)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHhH
Confidence 344555555555443
No 99
>3muj_A Transcription factor COE3; immunoglobulin like fold, helix-loop-helix, structural genom consortium, SGC, DNA binding protein; 1.92A {Homo sapiens} PDB: 3mqi_A
Probab=20.08 E-value=1.6e+02 Score=21.32 Aligned_cols=34 Identities=21% Similarity=0.349 Sum_probs=28.8
Q ss_pred HHHHHHHHHhcCCCC----CCCChhhHHHHHHHHHHHH
Q 045349 28 MKDLISQLASLIPSN----SKLSMPQILDDATSYIMHL 61 (152)
Q Consensus 28 m~~~~~~LrsllP~~----~K~~~~~il~~Ai~YIk~L 61 (152)
+.--|+.|..++|.. +++.|.-||..|.++.+.|
T Consensus 96 Id~gfqrl~k~~pr~pgdpe~lpk~~~lkraa~l~e~~ 133 (138)
T 3muj_A 96 IDYGFQRLQKVIPRHPGDPERLPKEVLLKRAADLVEAL 133 (138)
T ss_dssp HHHHHHHHHHHSCCCTTCCSSCCHHHHHHHHHHHHHHH
T ss_pred cccchhhhccccCCCCCChhhhhHHHHHHHHHHHHHHH
Confidence 455799999999965 7899999999999988766
No 100
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.01 E-value=1e+02 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 045349 57 YIMHLQKNKESLERKK 72 (152)
Q Consensus 57 YIk~L~~~v~~L~~~k 72 (152)
++..|+.++++|+.+.
T Consensus 24 ~~~~le~~~~~L~~~N 39 (63)
T 1ci6_A 24 EQEALTGECKELEKKN 39 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
Done!