BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045351
(349 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/326 (26%), Positives = 138/326 (42%), Gaps = 29/326 (8%)
Query: 1 MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
M+P+ F IF S P I + P+ + SYV L +H+ P LI+ A+
Sbjct: 1 MNPQEEF-----IFRSKLPDI-YIPKNLPLHSYVLENLSNHSSKP---CLINGANGDVYT 51
Query: 61 YPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
Y D+ L DV L +S + +L G +++ NP T
Sbjct: 52 YADVEL-TARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTP 110
Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYD-----DD 175
E+ + S+ + K+ + D SA D ++ D+
Sbjct: 111 AELAKHAKASRAKLLITQACYYEKVKDFARES---DVKVMCVDSAPDGCLHFSELTQADE 167
Query: 176 EERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXX---XXXXXL 232
E +V +S D A+ YSSGTTG+ KG +LT + L L
Sbjct: 168 NEAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDNPNLYFHSEDVIL 227
Query: 233 CTVPYFHSYGFT----CCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLK 288
C +P FH Y C LR +G ++ M KF+ G +L +E+++VS + PPV++
Sbjct: 228 CVLPMFHIYALNSIMLCGLR---VGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMS 284
Query: 289 MARDGGTMDGYDLSSIEVVASGGAHL 314
+A+ +D +DLSS+ ++ SGGA L
Sbjct: 285 IAKS-PDLDKHDLSSLRMIKSGGAPL 309
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/337 (27%), Positives = 139/337 (41%), Gaps = 38/337 (11%)
Query: 1 MDPKNGFCSETKIFHSLRPSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRIL 60
M+ ++ + IF S P I + P S+ Y+F + A P LI+ + H
Sbjct: 35 MEKQSNNNNSDVIFRSKLPDI-YIPNHLSLHDYIFQNISEFATKP---CLINGPTGHVYT 90
Query: 61 YPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTI 120
Y D+ + I DV LL N + +L+ G + NP T
Sbjct: 91 YSDVHV-ISRQIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTP 149
Query: 121 PEILRQIHLSKPVIAFATHDTAHKIPQLKY--GTVL--LDSPEFEPL------------S 164
EI +Q S + KI L+ G V+ +D E P+ S
Sbjct: 150 AEIAKQAKASNTKLIITEARYVDKIKPLQNDDGVVIVCIDDNESVPIPEGCLRFTELTQS 209
Query: 165 ATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXX 224
T++ + D V +S D A+ YSSGTTG+ KG +LT + L
Sbjct: 210 TTEASEVIDS------VEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENP 263
Query: 225 XX---XXXXXLCTVPYFHSYGFT----CCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVS 277
LC +P FH Y C LR +G +++ M KF+ +L+ ++ +V+
Sbjct: 264 NLYFHSDDVILCVLPMFHIYALNSIMLCGLR---VGAAILIMPKFEINLLLELIQRCKVT 320
Query: 278 HVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHL 314
+ PP+VL +A+ T + YDLSSI VV SG A L
Sbjct: 321 VAPMVPPIVLAIAKSSET-EKYDLSSIRVVKSGAAPL 356
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 64/246 (26%), Positives = 109/246 (44%), Gaps = 18/246 (7%)
Query: 89 LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
L S+N + ++ +GV V+P N T+ E++ + +SKP I F++ K+ +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
+ V+LDS ++ D+ Y + V V A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGYQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
SG+TG+ KG LT N+ L VP+ H +G L L
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
G +V + KFD LK +++++ ++V+L P + + ++ YDLS++ +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTNVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
L+ V
Sbjct: 320 PLSKEV 325
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 18/246 (7%)
Query: 89 LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
L S+N + ++ +GV V+P N T+ E++ + +SKP I F++ K+ +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
+ V+LDS ++ D+ + + V V A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
SG+TG+ KG LT N+ L VP+ H +G L L
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
G +V + KFD LK +++++ + V+L P + + ++ YDLS++ +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTSVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
L+ V
Sbjct: 320 PLSKEV 325
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/246 (25%), Positives = 108/246 (43%), Gaps = 18/246 (7%)
Query: 89 LLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQL 148
L S+N + ++ +GV V+P N T+ E++ + +SKP I F++ K+ +
Sbjct: 82 LCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITV 141
Query: 149 KYGT------VLLDSP-EFEPLSATDSL-------DYYDDDEERVRVSVSLSDPAAILYS 194
+ V+LDS ++ D+ + + V V A I+ S
Sbjct: 142 QKTVTTIKTIVILDSKVDYRGYQCLDTFIKRNTPPGFQASSFKTVEVDRK-EQVALIMNS 200
Query: 195 SGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM 252
SG+TG+ KG LT N+ L VP+ H +G L L
Sbjct: 201 SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLIC 260
Query: 253 GESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGA 312
G +V + KFD LK +++++ + V+L P + + ++ YDLS++ +ASGGA
Sbjct: 261 GFRVVMLTKFDEETFLKTLQDYKCTSVILV-PTLFAILNKSELLNKYDLSNLVEIASGGA 319
Query: 313 HLTLSV 318
L+ V
Sbjct: 320 PLSKEV 325
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 59/249 (23%), Positives = 111/249 (44%), Gaps = 28/249 (11%)
Query: 91 SQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKIPQLK- 149
S+NS++ + L +GV V+P N E+L +++S+P + F + KI ++
Sbjct: 87 SENSLQFFMPVLGALFIGVAVAPANDCYNERELLNSMNISQPTVVFVSKKGLQKILNVQK 146
Query: 150 -----YGTVLLDSP-EFEPLSAT------------DSLDYYDDDEERVRVSVSLSDPAAI 191
+++DS +++ + + D+ + +R + A I
Sbjct: 147 KLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTI------ALI 200
Query: 192 LYSSGTTGMVKGALLTQRNLXXXXXXXX--XXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
+ SSG+TG+ KG L R L L VP+ H +G L
Sbjct: 201 MNSSGSTGLPKGVALPHRALAVRFSHARDPIFGNQIAPDTAILSVVPFHHGFGMFTTLGY 260
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
L G +V M +F+ L++++++++ +L P + +A+ +D YDLS++ +AS
Sbjct: 261 LISGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFLAKS-TLIDKYDLSNLHEIAS 319
Query: 310 GGAHLTLSV 318
GGA L+ V
Sbjct: 320 GGAPLSKEV 328
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 73/317 (23%), Positives = 127/317 (40%), Gaps = 29/317 (9%)
Query: 23 FPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXX 82
+P E + + ++ +A P T A D + I Y +
Sbjct: 49 YPLEDGTAGEQLHKAMKRYAQVPGTIAFTDAHAEVNITYSEYFEMACRLAETMKRYGLGL 108
Query: 83 XXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTA 142
+A + S+NS++ + +GV V+P N E+ + +S+P I F +
Sbjct: 109 QHHIA-VCSENSLQFFMPVCGALFIGVGVAPTNDIYNERELYNSLSISQPTIVFCSKRAL 167
Query: 143 HKIPQLK------YGTVLLDSPE-----------FEPL--SATDSLDYYDDDEERVRVSV 183
KI ++ V+LDS E E + + DY D +R +
Sbjct: 168 QKILGVQKKLPIIQKIVILDSREDYMGKQSMYSFIESHLPAGFNEYDYIPDSFDRETAT- 226
Query: 184 SLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXX--XXXLCTVPYFHSY 241
A I+ SSG+TG+ KG LT +N+ L +P+ H +
Sbjct: 227 -----ALIMNSSGSTGLPKGVELTHKNICVRFSHCRDPVFGNQIIPDTAILTVIPFHHGF 281
Query: 242 GFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDL 301
G L L G +V M +F+ L++++++++ +L P + A+ +D YDL
Sbjct: 282 GMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLVDKYDL 340
Query: 302 SSIEVVASGGAHLTLSV 318
S++ +ASGGA L V
Sbjct: 341 SNLHEIASGGAPLAKEV 357
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 64.3 bits (155), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 23/318 (7%)
Query: 19 PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
P+ +P E + + ++ +A P T A D I Y + +
Sbjct: 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 69
Query: 79 XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
+ S+NS++ + L +GV V+P N E+L +++S+P + F +
Sbjct: 70 YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 129
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT---------DSLDYYDDDEERVRVS 182
KI ++ +++DS +++ + + YD E
Sbjct: 130 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 189
Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPYFHS 240
++ A I+ SSG+TG+ KG L R + L VP+ H
Sbjct: 190 KTI---ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 246
Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
+G L L G +V M +F+ L++++++++ +L P + A+ +D YD
Sbjct: 247 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYD 305
Query: 301 LSSIEVVASGGAHLTLSV 318
LS++ +ASGGA L+ V
Sbjct: 306 LSNLHEIASGGAPLSKEV 323
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 129/318 (40%), Gaps = 23/318 (7%)
Query: 19 PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
P+ +P E + + ++ +A P T A D I Y + +
Sbjct: 16 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 74
Query: 79 XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
+ S+NS++ + L +GV V+P N E+L +++S+P + F +
Sbjct: 75 YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 134
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT---------DSLDYYDDDEERVRVS 182
KI ++ +++DS +++ + + YD E
Sbjct: 135 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 194
Query: 183 VSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPYFHS 240
++ A I+ SSG+TG+ KG L R + L VP+ H
Sbjct: 195 KTI---ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHG 251
Query: 241 YGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYD 300
+G L L G +V M +F+ L++++++++ +L P + A+ +D YD
Sbjct: 252 FGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLIDKYD 310
Query: 301 LSSIEVVASGGAHLTLSV 318
LS++ +ASGGA L+ V
Sbjct: 311 LSNLHEIASGGAPLSKEV 328
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 68/321 (21%), Positives = 130/321 (40%), Gaps = 29/321 (9%)
Query: 19 PSIAFPPETTSVTSYVFSLLESHAPPPDTTALIDTASRHRILYPDLTLRIXXXXXXXXXX 78
P+ +P E + + ++ +A P T A D I Y + +
Sbjct: 11 PAPFYPLEDGTAGEQLHKAMKRYALVPGTIAFTDAHIEVNITYAEY-FEMSVRLAEAMKR 69
Query: 79 XXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFAT 138
+ S+NS++ + L +GV V+P N E+L +++S+P + F +
Sbjct: 70 YGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVS 129
Query: 139 HDTAHKIPQLK------YGTVLLDSP-EFEPLSAT------------DSLDYYDDDEERV 179
KI ++ +++DS +++ + + D+ + +R
Sbjct: 130 KKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQSMYTFVTSHLPPGFNEYDFVPESFDRD 189
Query: 180 RVSVSLSDPAAILYSSGTTGMVKGALLTQRN--LXXXXXXXXXXXXXXXXXXXXLCTVPY 237
+ A I+ SSG+TG+ KG L R + L VP+
Sbjct: 190 KTI------ALIMNSSGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPF 243
Query: 238 FHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMD 297
H +G L L G +V M +F+ L++++++++ +L P + A+ +D
Sbjct: 244 HHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKS-TLID 302
Query: 298 GYDLSSIEVVASGGAHLTLSV 318
YDLS++ +ASGGA L+ V
Sbjct: 303 KYDLSNLHEIASGGAPLSKEV 323
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 69/148 (46%), Gaps = 5/148 (3%)
Query: 179 VRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYF 238
+ S +L D A+I+++SGTTG K T RN L +P +
Sbjct: 156 LNTSFNLDDIASIMFTSGTTGPQKAVPQTFRN-HYASAIGCKESLGFDRDTNWLSVLPIY 214
Query: 239 HSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDG 298
H G + LR++ G ++ + KF+ ++L ++ R++H+ L P L G +
Sbjct: 215 HISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQ-TLNWLMQQGLHEP 273
Query: 299 YDLSSIEVVASGGAHLTLSVIRKYLQLN 326
Y+L I + GGA L+ ++I LQ N
Sbjct: 274 YNLQKILL---GGAKLSATMIETALQYN 298
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 32/266 (12%)
Query: 85 DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK 144
D LL NSV L+ LG V P N L+ P ++F D+ K
Sbjct: 69 DRVALLMPNSVEFCCLFYGAAKLGAVAVPIN-----------TRLAAPEVSFILSDSGSK 117
Query: 145 IPQLKYGTV---LLDSPEFE---PLSATDSLDYYDDDEERVRVSVSLSDPAA-------- 190
+ + YG ++D+ + P + TD + D ER+R S + +PA
Sbjct: 118 V--VIYGAPSAPVIDAIRAQADPPGTVTDWIGA-DSLAERLR-SAAADEPAVECGGDDNL 173
Query: 191 -ILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
I+Y+SGTTG KG + T ++ L +P FH T + S
Sbjct: 174 FIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL-LLPLPMFHVAALTTVIFS 232
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
G +L+ M +FD ++ + E RV + A P +L R D +
Sbjct: 233 AMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFRYFIT 291
Query: 310 GGAHLTLSVIRKYLQLNRTVNRQLCL 335
GGA + ++I+ Y N V + L
Sbjct: 292 GGAPMPEALIKIYAAKNIEVVQGYAL 317
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 104/266 (39%), Gaps = 32/266 (12%)
Query: 85 DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHK 144
D LL NSV L+ LG V P N L+ P ++F D+ K
Sbjct: 55 DRVALLMPNSVEFCCLFYGAAKLGAVAVPIN-----------TRLAAPEVSFILSDSGSK 103
Query: 145 IPQLKYGTV---LLDSPEFE---PLSATDSLDYYDDDEERVRVSVSLSDPAA-------- 190
+ + YG ++D+ + P + TD + D ER+R S + +PA
Sbjct: 104 V--VIYGAPSAPVIDAIRAQADPPGTVTDWIGA-DSLAERLR-SAAADEPAVECGGDDNL 159
Query: 191 -ILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCCLRS 249
I+Y+SGTTG KG + T ++ L +P FH T + S
Sbjct: 160 FIMYTSGTTGHPKGVVHTHESVHSAASSWASTIDVRYRDRL-LLPLPMFHVAALTTVIFS 218
Query: 250 LGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVAS 309
G +L+ M +FD ++ + E RV + A P +L R D +
Sbjct: 219 AMRGVTLISMPQFDATKVWSLIVEERVC-IGGAVPAILNFMRQVPEFAELDAPDFRYFIT 277
Query: 310 GGAHLTLSVIRKYLQLNRTVNRQLCL 335
GGA + ++I+ Y N V + L
Sbjct: 278 GGAPMPEALIKIYAAKNIEVVQGYAL 303
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 88/222 (39%), Gaps = 9/222 (4%)
Query: 51 IDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
I+TA+ +I Y +L R VA ++ SV VLYL+ G V
Sbjct: 21 IETAAGDKISYAELVARAGRVANVLVARGLQVGDRVA-AQTEKSVEALVLYLATVRAGGV 79
Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAF---ATHDTAHKIPQLKYGTVLLDSPEFEPLSATD 167
P N + T+ E+ I ++P I + D I TV P+ S TD
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKVGATVETLGPDGRG-SLTD 138
Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXX 227
+ E + D AAILY+SGTTG KGA L+ NL
Sbjct: 139 AAAGAS--EAFATIDRGADDLAAILYTSGTTGRSKGAXLSHDNL-ASNSLTLVDYWRFTP 195
Query: 228 XXXXLCTVPYFHSYG-FTCCLRSLGMGESLVCMGKFDFGRML 268
+ +P +H++G F +L S + + KFD ++L
Sbjct: 196 DDVLIHALPIYHTHGLFVASNVTLFARGSXIFLPKFDPDKIL 237
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ ++ VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L +P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ ++ VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L +P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVIEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ ++ VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L +P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ ++ VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L +P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 60/248 (24%), Positives = 101/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ ++ VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L +P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 MSTQVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 100/248 (40%), Gaps = 20/248 (8%)
Query: 45 PDTTALIDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSL 104
PD AL A R+ + +L R+ VA +++ NS V + L+L
Sbjct: 16 PDHCALAVPARGLRLTHAELRARVEAVAARLHADGLRPQQRVA-VVAPNSADVVIAILAL 74
Query: 105 FSLGVVVSPCNP---SCTIPEILRQIHLSKPVIAFATHDTAHKIPQLKYGTVLLDSPEF- 160
LG V + NP S + E++++ + VIA A I Q G ++ +
Sbjct: 75 HRLGAVPALLNPRLKSAELAELIKRGEXTAAVIAVG-RQVADAIFQSGSGARIIFLGDLV 133
Query: 161 ---EPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXX- 216
EP S ++ D +R + PA I Y+SGTTG+ K A++ QR
Sbjct: 134 RDGEPYSYGPPIE----DPQR-----EPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLF 184
Query: 217 XXXXXXXXXXXXXXXLCTVPYFHSYGFTCCL-RSLGMGESLVCMGKFDFGRMLKAVEEFR 275
L P +H GF L +L + + V + +F L+ V++ +
Sbjct: 185 XSTQVGLRHGRHNVVLGLXPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQ 244
Query: 276 VSHVVLAP 283
V+ + P
Sbjct: 245 VTSLFATP 252
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 70/163 (42%), Gaps = 3/163 (1%)
Query: 164 SATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXX 223
S ++ D +D E V+V+ D A I Y+ GTTG KG LT NL
Sbjct: 159 SLSEVXDSGSEDFENVKVNPE-EDVALIPYTGGTTGXPKGVXLTHFNLAANALQLAVATG 217
Query: 224 XXXXXXXXLCTVPYFHSYGFTCCLRSLGMGESLVCMGKFDFGRMLKAVEEFRVSHVVLAP 283
C P FHS F + +G V G F+ + + +E+++ + P
Sbjct: 218 LSHXDTIVGCX-PXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFSWAVP 276
Query: 284 PVVLKMARD-GGTMDGYDLSSIEVVASGGAHLTLSVIRKYLQL 325
P + + + YD S ++V A+G + +++ K L+L
Sbjct: 277 PALNVLVNTLESSNKTYDWSYLKVFATGAWPVAPALVEKLLKL 319
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 51 IDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
I+TA+ I Y +L R VA ++ SV VLYL+ G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVA-AQTEXSVEALVLYLATVRAGGV 79
Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAF---ATHDTAHKIPQLKYGTVLLDSPEFEPLSATD 167
P N + T+ E+ I ++P I + D I TV P+ S TD
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRG-SLTD 138
Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL 211
+ E + D AAILY+SGTTG GA+L+ NL
Sbjct: 139 AAAGAS--EAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNL 180
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 51 IDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
I+TA+ I Y +L R VA ++ SV VLYL+ G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVA-AQTEXSVEALVLYLATVRAGGV 79
Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAF---ATHDTAHKIPQLKYGTVLLDSPEFEPLSATD 167
P N + T+ E+ I ++P I + D I TV P+ S TD
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRG-SLTD 138
Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL 211
+ E + D AAILY+SGTTG GA+L+ NL
Sbjct: 139 AAAGAS--EAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNL 180
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 37.4 bits (85), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 67/164 (40%), Gaps = 7/164 (4%)
Query: 51 IDTASRHRILYPDLTLRIXXXXXXXXXXXXXXXXDVAFLLSQNSVRVPVLYLSLFSLGVV 110
I+TA+ I Y +L R VA ++ SV VLYL+ G V
Sbjct: 21 IETAAGDXISYAELVARAGRVANVLVARGLQVGDRVA-AQTEXSVEALVLYLATVRAGGV 79
Query: 111 VSPCNPSCTIPEILRQIHLSKPVIAF---ATHDTAHKIPQLKYGTVLLDSPEFEPLSATD 167
P N + T+ E+ I ++P I + D I TV P+ S TD
Sbjct: 80 YLPLNTAYTLHELDYFITDAEPXIVVCDPSXRDGIAAIAAXVGATVETLGPDGRG-SLTD 138
Query: 168 SLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVKGALLTQRNL 211
+ E + D AAILY+SGTTG GA+L+ NL
Sbjct: 139 AAAGAS--EAFATIDRGADDLAAILYTSGTTGRSXGAMLSHDNL 180
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 8/117 (6%)
Query: 152 TVLLDSPEFEPLSATDSLDYYDDDEERVRVSV-----SLSDPAAILYSSGTTGMVKGALL 206
+++L P+ E A +L+ D D R R +V DPA ++Y+SGTTG KGA++
Sbjct: 117 SLVLAPPDAELPPALGALERVDVDV-RARGAVPEDGADDGDPALVVYTSGTTGPPKGAVI 175
Query: 207 TQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFT-CCLRSLGMGESLVCMGKF 262
+R L + +P FH +G L L G S+ +G+F
Sbjct: 176 PRRAL-ATTLDALADAWQWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRHLGRF 231
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 52/129 (40%), Gaps = 15/129 (11%)
Query: 86 VAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHDTAHKI 145
V L ++ S+ + + L + G P +P I + S + +
Sbjct: 516 VVALYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQA 575
Query: 146 PQLKY-GTVLL--DSPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSGTTGMVK 202
+L Y GT L D FE A+D ++ +DPA I+Y+SGTTG K
Sbjct: 576 AELPYTGTTLFIDDQTRFEE-QASDPA-----------TAIDPNDPAYIMYTSGTTGKPK 623
Query: 203 GALLTQRNL 211
G + T N+
Sbjct: 624 GNITTHANI 632
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSAGEPINPEAWEWYW---KKIGKEKC 407
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 64/159 (40%), Gaps = 9/159 (5%)
Query: 182 SVSLSDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSY 241
+++ DP ILY+SG+TG KG L T CT
Sbjct: 252 AMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVT 311
Query: 242 GFTCCLRS-LGMGE-SLVCMGKFDF---GRMLKAVEEFRVSHVVLAPPVVLK-MARDGGT 295
G + L L G +L+ G ++ RM + V++ +V+ + AP + MA
Sbjct: 312 GHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA 371
Query: 296 MDGYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVNRQLC 334
++G D SS+ ++ S G + Y + + ++ C
Sbjct: 372 IEGTDRSSLRILGSVGEPINPEAWEWYW---KKIGKEKC 407
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 32.0 bits (71), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 15/201 (7%)
Query: 85 DVAFLLSQNSVRVPVLYLSLFSLGVVVSPCNPSCTIPEILRQIHLSKPVIAFATHD---- 140
D +LSQN + L ++ +G ++ P N EI + P + A D
Sbjct: 57 DRVAILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDI 116
Query: 141 TAHKIPQL---KYGTVLLD-SPEFEPLSATDSLDYYDDDEERVRVSVSLSDPAAILYSSG 196
A +P L K + D S F P S + E +D I++++
Sbjct: 117 VAGVLPSLGGVKKAYAIGDGSGPFAPFKDLASDTPFSAPE------FGAADGFVIIHTAA 170
Query: 197 TTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCCLRSLGMGESL 256
G +GAL++Q NL L +P FH G L G +
Sbjct: 171 VGGRPRGALISQGNLLIAQSSLVDAWRLTEADVN-LGMLPLFHVTGLGLMLTLQQAGGAS 229
Query: 257 VCMGKFDFGRMLKAVEEFRVS 277
V KFD + + +E +V+
Sbjct: 230 VIAAKFDPAQAARDIEAHKVT 250
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/168 (19%), Positives = 70/168 (41%), Gaps = 25/168 (14%)
Query: 168 SLDYYDDDEERVRVSVSL------SDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXX 221
++ +++D ++R +L +D A ++Y+SGTTG KG +L + +
Sbjct: 158 QVEIFEEDTIKIREGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS 217
Query: 222 XXXXXXXXXXLCTVPYFHSYGFTCCLRSLGM----GESLVCMGK---FDFGRMLKAVEEF 274
+ F S F + + M G SL + K DF + + + +
Sbjct: 218 LNVTEKDR-----IGQFASISFDASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQK 272
Query: 275 RVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIRKY 322
++ + L P V+ +D + SI+ + + G+ + S++ K+
Sbjct: 273 EITVITLPPTYVVH-------LDPERILSIQTLITAGSATSPSLVNKW 313
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 63/155 (40%), Gaps = 3/155 (1%)
Query: 190 AILYSSGTTGMVKGALLTQRNLXXXXXXXXXX-XXXXXXXXXXLCTVPYFHSYGFTCCLR 248
+ Y++GTTG+ KG + + R L L VP FH +
Sbjct: 180 GMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGTALSEKDVVLPVVPMFHVNAWCLPYA 239
Query: 249 SLGMGESLVCMG-KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVV 307
+ +G V G + D +++ + V+ P V L +A D G+ L ++ +
Sbjct: 240 ATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALA-DYLESTGHRLKTLRRL 298
Query: 308 ASGGAHLTLSVIRKYLQLNRTVNRQLCLEFGAPII 342
GG+ S+I ++ ++ V + L +P++
Sbjct: 299 VVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVV 333
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 70/181 (38%), Gaps = 13/181 (7%)
Query: 144 KIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEERVRV-SVSLSDPAAILYSSGTTGMVK 202
K+P LK V ++ EF PL D E V++ V SD A + S G+TG+ K
Sbjct: 147 KLPTLKNIIVAGEAEEFLPLE--------DLHTEPVKLPEVKSSDVAFLQLSGGSTGLSK 198
Query: 203 GALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTC--CLRSLGMGESLVCMG 260
T + L +P H+Y + L L G +V
Sbjct: 199 LIPRTHDDYIYSLKRSVEVCWLDHSTVY-LAALPMAHNYPLSSPGVLGVLYAGGRVVLSP 257
Query: 261 KFDFGRMLKAVEEFRVSHVVLAPPVVLKMARDGGTMDGYDLSSIEVVASGGAHLTLSVIR 320
+E +V+ L PP+ + + D + DLSS++V+ GGA + R
Sbjct: 258 SPSPDDAFPLIEREKVTITALVPPLAM-VWMDAASSRRDDLSSLQVLQVGGAKFSAEAAR 316
Query: 321 K 321
+
Sbjct: 317 R 317
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/153 (20%), Positives = 64/153 (41%), Gaps = 9/153 (5%)
Query: 186 SDPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTC 245
+D A + Y+SG+T +G ++T R + + +P++H G
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAISHDGIKLRPGDRCVSWLPFYHDXGLVG 234
Query: 246 CLRS-LGMGESLVCMGKFDFG----RMLKAVEEFRVSHVVLAPPVVLKMAR---DGGTMD 297
L + + S+ + DF + LK + + R + V +APP ++ + + +
Sbjct: 235 FLLTPVATQLSVDYLRTQDFAXRPLQWLKLISKNRGT-VSVAPPFGYELCQRRVNEKDLA 293
Query: 298 GYDLSSIEVVASGGAHLTLSVIRKYLQLNRTVN 330
DLS V G ++ + ++ + R VN
Sbjct: 294 ELDLSCWRVAGIGAEPISAEQLHQFAECFRQVN 326
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 27.7 bits (60), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 187 DPAAILYSSGTTGMVKGALLTQRNLXXXXXXXXXXXXXXXXXXXXLCTVPYFHSYGFTCC 246
D A LYSSG+TG KG + T NL F +YG
Sbjct: 184 DIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPILGIAENDVVFSAAKLFFAYGLGNG 243
Query: 247 LR-SLGMGESLVCMGK 261
L L +G + + M +
Sbjct: 244 LTFPLSVGATAILMAE 259
>pdb|2NPT|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2NPT|C Chain C, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 2 Phox Domain (Map3k2-Phox)
pdb|2O2V|A Chain A, Crystal Structure Of The Complex Of Human Mitogen
Activated Protein Kinase Kinase 5 Phox Domain
(Map2k5-Phox) With Human Mitogen Activated Protein
Kinase Kinase Kinase 3 (Map3k3b-Phox)
Length = 106
Score = 27.7 bits (60), Expect = 9.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 141 TAHKIPQLKYGTVLLDSPEFEPLSATDSLDYYDDDEER--VRVSVSLSDPAAILYSSGTT 198
T H PQL + VL + P + T + +Y D+D +R VR + + YS+
Sbjct: 30 TVHSGPQLLFRDVLDVIGQVLPEATTTAFEYEDEDGDRITVRSDEEMKAMLSYYYSTVME 89
Query: 199 GMVKGALL 206
V G L+
Sbjct: 90 QQVNGQLI 97
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,100,701
Number of Sequences: 62578
Number of extensions: 326066
Number of successful extensions: 840
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 46
length of query: 349
length of database: 14,973,337
effective HSP length: 100
effective length of query: 249
effective length of database: 8,715,537
effective search space: 2170168713
effective search space used: 2170168713
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)