Citrus Sinensis ID: 045353

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------36
Protein Sequence
ARKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALKLPK
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHccccHHHHHccccccHHccccccccccccccccccHHHHHHHHcccHHcHHHHHHHHHHHccccccccccHHHHHcccccccccccccccccccccccccccccHHHccHHHHHHHHHccccccccccccccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccccccccccccccEEHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccEccEEccHHHcEEccEccccccccHHHccHHHHcccccccHHHHHHHHHHHHHHHHcccccccccEccEcHHHHHHHHHHHHHccccHHHHHHcccHHHHEcccccEcccccccEccHHHHHHHcccccHHHHHHHHHHHcccccccccccEcHHHHHccHHHccccccccccccccccccccccccHHcccHHHHHHHHHHcccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
arksgvplilptktdkvvtessaskenkslygdltkNQKKKVKKKAKKAAqgcagteafdeseadskpsspdnfsvdtipngvsveerqndsvvnnessrdnevkntsqgvkghrrpsratRKNLLAAVDVQCKLVdfgnacwthkqftndiqtrqyrcpevllgskystsadLWSFACICFELatgdvlfdphsgdnydkdEDHLALMMELLGMmprkialggrysrdffnrhgdlrhiRRLRFWPMNKVLvekydfnerdakdmADFLVpildfvpekrptaaqclshpwmsagpqlrepsmaagepretegsiperkrREQEEREAMEVGVGNMAINGASKLSSDQEAAALKLPK
Flexible Loop (DISEMBL)
arksgvplilptktdkvvtessaskenkslygdltknqkkkVKKKAKKAaqgcagteafdeseadskpsspdnfsvdtipngvsveerqndsvvnnessrdnevkntsqgvkghrrpsratrknLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGdlrhirrlrfwpmnKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPqlrepsmaagepretegsiperkrreqEEREAMEVGVGNMAingasklssdqeaaalklpk
Low Complexity Region (SEG)
ARKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQkkkvkkkakkaaQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPerkrreqeereameVGVGNMAINGASKLSSDQEAAALKLPK
Disordered region (IsUnstruct)
***************************************************************************************************************************NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL**********************************************************************
Disordered Region (DISOPRED)
******P***********************************************************************************************************************AAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA***************************************************************
Disordered Region (DISEMBL)
ARKSGVPLILPTKT************NKSLYGDLT*************************************NFSVDTIPNGVSVE*********************************ATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR****************************AMEVGVGNMAINGASKL*************
Disordered Region (DISPRO)
*****VPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMA********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
ARKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALKLPK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	358	2.2.26 [Sep-21-2011]
Q96SB4	655	SRSF protein kinase 1 OS=	yes	no	0.469	0.256	0.571	2e-61
Q5RD27	655	SRSF protein kinase 1 OS=	yes	no	0.469	0.256	0.571	3e-61
O70551	648	SRSF protein kinase 1 OS=	yes	no	0.469	0.259	0.577	4e-61
O54781	681	SRSF protein kinase 2 OS=	no	no	0.460	0.242	0.593	4e-61
P78362	688	SRSF protein kinase 2 OS=	no	no	0.460	0.239	0.593	1e-60
Q9UPE1	567	SRSF protein kinase 3 OS=	no	no	0.458	0.289	0.560	4e-57
Q9Z0G2	565	SRSF protein kinase 3 OS=	no	no	0.458	0.290	0.560	4e-57
B8Y466	566	SRSF protein kinase 3 OS=	no	no	0.458	0.289	0.554	4e-56
P36616	544	Protein kinase dsk1 OS=Sc	yes	no	0.639	0.420	0.444	1e-53
Q45FA5	426	Serine/threonine-protein	N/A	no	0.628	0.528	0.451	2e-51

>sp|Q96SB4|SRPK1_HUMAN SRSF protein kinase 1 OS=Homo sapiens GN=SRPK1 PE=1 SV=2

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 134/168 (79%)

Query: 128 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct: 488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           D LF+PHSG+ Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W 
Sbjct: 548 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 607

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           + +VLVEKY++++ +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 608 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS 655

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Isoform 2 phosphorylates SFRS2, ZRSR2, LBR and PRM1. Isoform 2 phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Isoform 2 can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Isoform 1 and isoform 2 can induce splicing of exon 10 in MAPT/TAU. The ratio of isoform 1/isoform 2 plays a decisive role in determining cell fate in K562 leukaemic cell line: isoform 2 favors proliferation where as isoform 1 favors differentiation.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q5RD27|SRPK1_PONAB SRSF protein kinase 1 OS=Pongo abelii GN=SRPK1 PE=2 SV=2

 Score =  236 bits (601), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 134/168 (79%)

Query: 128 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct: 488 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 547

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           D LF+PHSG+ Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W 
Sbjct: 548 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 607

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           + +VLVEKY++++ +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 608 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS 655

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O70551|SRPK1_MOUSE SRSF protein kinase 1 OS=Mus musculus GN=Srpk1 PE=1 SV=2

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 134/168 (79%)

Query: 128 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           A  +Q K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct: 481 AEKLQVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 540

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           D LF+PHSG++Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W 
Sbjct: 541 DYLFEPHSGEDYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 600

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           + +VLVEKY++ + +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 601 LLEVLVEKYEWPQEEAAGFTDFLLPMLELMPEKRATAAECLRHPWLNS 648

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Plays a central role in the regulatory network for splicing, controlling the intranuclear distribution of splicing factors in interphase cells and the reorganization of nuclear speckles during mitosis. Can influence additional steps of mRNA maturation, as well as other cellular activities, such as chromatin reorganization in somatic and sperm cells and cell cycle progression. Phosphorylates SFRS2, ZRSR2, LBR and PRM1. Phosphorylates SRSF1 using a directional (C-terminal to N-terminal) and a dual-track mechanism incorporating both processive phosphorylation (in which the kinase stays attached to the substrate after each round of phosphorylation) and distributive phosphorylation steps (in which the kinase and substrate dissociate after each phosphorylation event). The RS domain of SRSF1 binds first to a docking groove in the large lobe of the kinase domain of SRPK1. This induces certain structural changes in SRPK1 and/or RRM2 domain of SRSF1, allowing RRM2 to bind the kinase and initiate phosphorylation. The cycles continue for several phosphorylation steps in a processive manner (steps 1-8) until the last few phosphorylation steps (approximately steps 9-12). During that time, a mechanical stress induces the unfolding of the beta-4 motif in RRM2, which then docks at the docking groove of SRPK1. This also signals RRM2 to begin to dissociate, which facilitates SRSF1 dissociation after phosphorylation is completed. Can mediate hepatitis B virus (HBV) core protein phosphorylation. It plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles. Can induce splicing of exon 10 in MAPT/TAU.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O54781|SRPK2_MOUSE SRSF protein kinase 2 OS=Mus musculus GN=Srpk2 PE=1 SV=2

 Score =  235 bits (599), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 128/165 (77%)

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD L
Sbjct: 517 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 576

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L+ W +  
Sbjct: 577 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 636

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           VLVEKY +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct: 637 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 681

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P78362|SRPK2_HUMAN SRSF protein kinase 2 OS=Homo sapiens GN=SRPK2 PE=1 SV=3

 Score =  234 bits (596), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 128/165 (77%)

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD L
Sbjct: 524 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 583

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L+ W +  
Sbjct: 584 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 643

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           VLVEKY +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct: 644 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 688

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains and is involved in the phosphorylation of SR splicing factors and the regulation of splicing. Promotes neuronal apoptosis by up-regulating cyclin-D1 (CCND1) expression. This is done by the phosphorylation of SRSF2, leading to the suppression of p53/TP53 phosphorylation thereby relieving the repressive effect of p53/TP53 on cyclin-D1 (CCND1) expression. Phosphorylates ACIN1, and redistributes it from the nuclear speckles to the nucleoplasm, resulting in cyclin A1 but not cyclin A2 up-regulation. Plays an essential role in splicesomal B complex formation via the phosphorylation of DDX23/PRP28. Can mediate hepatitis B virus (HBV) core protein phosphorylation. Plays a negative role in the regulation of HBV replication through a mechanism not involving the phosphorylation of the core protein but by reducing the packaging efficiency of the pregenomic RNA (pgRNA) without affecting the formation of the viral core particles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9UPE1|SRPK3_HUMAN SRSF protein kinase 3 OS=Homo sapiens GN=SRPK3 PE=2 SV=2

 Score =  222 bits (565), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 126/164 (76%)

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATGD L
Sbjct: 403 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 462

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +P   AL GRYSR+FFNR G+LRHI  L+ W + +
Sbjct: 463 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 522

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           VL+EKY++    A   + FL+P+++++PEKR +AA CL HPW++
Sbjct: 523 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 566

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9Z0G2|SRPK3_MOUSE SRSF protein kinase 3 OS=Mus musculus GN=Srpk3 PE=2 SV=1

 Score =  221 bits (564), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 92/164 (56%), Positives = 126/164 (76%)

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATGD L
Sbjct: 401 IKIKIADLGNACWVHKHFTEDIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 460

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +P   AL GRYSR+FFNR G+LRHI  L+ W + +
Sbjct: 461 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIPNLKHWGLYE 520

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           VL+EKY++    A   + FL+P+++++PEKR +AA CL HPW++
Sbjct: 521 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 564

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B8Y466|SRPK3_PIG SRSF protein kinase 3 OS=Sus scrofa GN=SRPK3 PE=2 SV=1

 Score =  218 bits (556), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 125/164 (76%)

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT  IQTRQYR  EVL+G++Y   AD+WS AC+ FELATGD L
Sbjct: 402 IRIKIADLGNACWVHKHFTEGIQTRQYRAVEVLIGAEYGPPADIWSTACMAFELATGDYL 461

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +P   AL GRYSR+FFNR G+LRHI  L+ W + +
Sbjct: 462 FEPHSGEDYSRDEDHIAHIVELLGDIPPAFALSGRYSREFFNRRGELRHIHNLKHWGLYE 521

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           VL+EKY++    A   + FL+P+++++PEKR +AA CL HPW++
Sbjct: 522 VLMEKYEWPLEQATQFSAFLLPMMEYIPEKRASAADCLQHPWLN 565

Serine/arginine-rich protein-specific kinase which specifically phosphorylates its substrates at serine residues located in regions rich in arginine/serine dipeptides, known as RS domains. Phosphorylates the SR splicing factor SRSF1 and the lamin-B receptor (LBR) in vitro. Required for normal muscle development.

Sus scrofa (taxid: 9823)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P36616|DSK1_SCHPO Protein kinase dsk1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dsk1 PE=3 SV=2

 Score =  210 bits (535), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 112/252 (44%), Positives = 152/252 (60%), Gaps = 23/252 (9%)

Query: 68  PSSPDNFSVDTIPN--GVSVEERQNDSVVNNE------SSRDNEVKNTSQGVKGHRRPSR 119
           PSSP   ++   P+  G   E    DS  +N       SS DN +     GV G + P  
Sbjct: 295 PSSPFTSTLSRFPSLEGAVSEISLRDSQKHNSHPNSPFSSGDNSL--ILDGVNGSQEP-- 350

Query: 120 ATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
                      +  K+ D GNACWT K FTND+QTRQYR PEV+LG ++  SAD WSFAC
Sbjct: 351 --------VPKITVKIADLGNACWTRKHFTNDVQTRQYRSPEVILGCRWGASADCWSFAC 402

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I FEL TGD LFDP +G++Y K++DH+A ++ELL   P+++AL G++SRD FNR G+LR+
Sbjct: 403 IIFELLTGDYLFDPRNGNSYSKEDDHIAQIIELLVNYPKQMALSGKHSRDLFNRRGELRN 462

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM--SAGP 297
           I +L+FWP+  VL +KY F+   A+ ++DFL P+L F P KR  A    + PW+   A P
Sbjct: 463 IHKLKFWPLKDVLEQKYHFSAELAQQISDFLSPMLCFDPAKRTNAGYMSNSPWLREVADP 522

Query: 298 QLR-EPSMAAGE 308
             + E + A GE
Sbjct: 523 TFKIETTGATGE 534

May play an important role in mitotic control by altering cellular location, degree of phosphorylation and kinase activity. Abundant expression accelerates the exit when cells are in M-phase and also delays the entry into mitosis when cells are in G2. Phosphorylates prp2 in vitro and so may have a role in co-ordinating pre-mRNA splicing with the prgression of the cell division cycle.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q45FA5|SRPK_PHYPO Serine/threonine-protein kinase SRPK OS=Physarum polycephalum PE=1 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 106/235 (45%), Positives = 149/235 (63%), Gaps = 10/235 (4%)

Query: 71  PDNFSVDTI--PNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRR--PSRATRKNL- 125
           P+N  +D +  P+ ++ +++  D   ++ S   N+ +N  Q   G  +  PS     +L 
Sbjct: 191 PENVLLDHLLRPDTLNWDDQFLDGA-SSSSPISNDAENARQTRSGKIKWEPSARIADSLS 249

Query: 126 --LAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
             +  V +  K+ D G ACWTHK FT+D+QTRQYRCPEV+LG K+ T+ D+WS AC+ FE
Sbjct: 250 RKIVKVPI-VKIADLGTACWTHKHFTDDVQTRQYRCPEVILGQKWDTTIDMWSLACMVFE 308

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           LATGD+LF P  GD YDK +DHLALM+ELLG MPR     G  S  +FN  G+L++IR+L
Sbjct: 309 LATGDLLFCPKKGDKYDKTDDHLALMIELLGRMPRSFITKGSKSEKYFNSKGELKYIRKL 368

Query: 244 R-FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
              W M+ VL EKY F + +A  ++ FL+P+L + PEKR TA   L HP+M+  P
Sbjct: 369 GPQWGMSDVLYEKYRFPKEEADKLSAFLLPMLQYEPEKRATARDSLEHPYMADVP 423

Phosphorylates serine/arginine-rich protein PSR.

Physarum polycephalum (taxid: 5791)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
225436389	548	PREDICTED: serine/threonine-protein kina	0.974	0.636	0.703	1e-135
359479324	555	PREDICTED: serine/threonine-protein kina	0.974	0.628	0.703	1e-135
225441054	557	PREDICTED: serine/threonine-protein kina	0.969	0.622	0.674	1e-134
356543526	545	PREDICTED: serine/threonine-protein kina	0.958	0.629	0.703	1e-132
356565735	546	PREDICTED: serine/threonine-protein kina	0.958	0.628	0.707	1e-131
357440249	546	Serine/threonine protein kinase SRPK1 [M	0.938	0.615	0.648	1e-128
224132112	548	predicted protein [Populus trichocarpa]	0.966	0.631	0.704	1e-126
255575463	558	srpk, putative [Ricinus communis] gi|223	0.972	0.623	0.651	1e-126
255572994	547	srpk, putative [Ricinus communis] gi|223	0.958	0.627	0.669	1e-124
224102989	547	predicted protein [Populus trichocarpa]	0.952	0.623	0.692	1e-124

>gi|225436389|ref|XP_002271598.1| PREDICTED: serine/threonine-protein kinase SRPK-like isoform 1 [Vitis vinifera]

 Score =  488 bits (1257), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/354 (70%), Positives = 303/354 (85%), Gaps = 5/354 (1%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG  LILPT  DK+V+E +ASK+ K++ GDLTKNQKKK+++KAK+AAQGC G EA D+
Sbjct: 194 RKSGASLILPTSRDKIVSEPAASKDTKNMNGDLTKNQKKKIRRKAKRAAQGCMGKEASDD 253

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
            E D+K    ++ + D   NG SVEE+QN SV+ + S   ++VK+  +  +G RR SR+T
Sbjct: 254 PELDAKAPDSEDSNNDANSNGDSVEEQQNSSVIKSSSVNTDDVKDVRRENQGRRRGSRST 313

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+ LLA VD++CKLVDFGNACWT+KQFTNDIQTRQYRCPEV+LGSKYSTSADLWSFACIC
Sbjct: 314 RQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACIC 373

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FEL TGDVLFDPHSGDNYD+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRHIR
Sbjct: 374 FELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIR 433

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWP+NKVL EKY+F+E+DA D+ADFLVPILDFVPEKRPTAAQCL+HPW++AGP+LRE
Sbjct: 434 RLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQCLTHPWINAGPRLRE 493

Query: 302 PSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALK 355
           PS+A+  P+ T+G + E  +RE++EREAMEVGVGN+AI+G SK  SD+E  +++
Sbjct: 494 PSIAS-LPKATDGGVSE--KRERDEREAMEVGVGNIAIDGPSK--SDKEPQSIQ 542

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479324|ref|XP_003632258.1| PREDICTED: serine/threonine-protein kinase SRPK-like [Vitis vinifera]

 Score =  488 bits (1255), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 249/354 (70%), Positives = 303/354 (85%), Gaps = 5/354 (1%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG  LILPT  DK+V+E +ASK+ K++ GDLTKNQKKK+++KAK+AAQGC G EA D+
Sbjct: 201 RKSGASLILPTSRDKIVSEPAASKDTKNMNGDLTKNQKKKIRRKAKRAAQGCMGKEASDD 260

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
            E D+K    ++ + D   NG SVEE+QN SV+ + S   ++VK+  +  +G RR SR+T
Sbjct: 261 PELDAKAPDSEDSNNDANSNGDSVEEQQNSSVIKSSSVNTDDVKDVRRENQGRRRGSRST 320

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+ LLA VD++CKLVDFGNACWT+KQFTNDIQTRQYRCPEV+LGSKYSTSADLWSFACIC
Sbjct: 321 RQKLLAEVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACIC 380

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FEL TGDVLFDPHSGDNYD+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRHIR
Sbjct: 381 FELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIR 440

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWP+NKVL EKY+F+E+DA D+ADFLVPILDFVPEKRPTAAQCL+HPW++AGP+LRE
Sbjct: 441 RLRFWPLNKVLTEKYEFSEQDANDIADFLVPILDFVPEKRPTAAQCLTHPWINAGPRLRE 500

Query: 302 PSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALK 355
           PS+A+  P+ T+G + E  +RE++EREAMEVGVGN+AI+G SK  SD+E  +++
Sbjct: 501 PSIAS-LPKATDGGVSE--KRERDEREAMEVGVGNIAIDGPSK--SDKEPQSIQ 549

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441054|ref|XP_002277869.1| PREDICTED: serine/threonine-protein kinase SRPK1 [Vitis vinifera]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/347 (67%), Positives = 279/347 (80%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG  LILP+  DK V ES   K+ K+  GDLTKNQKKK+++KAK+AA+GC   +A  E
Sbjct: 194 RKSGATLILPSNKDKNVFESGVGKDIKTSNGDLTKNQKKKIRRKAKQAAKGCVEKDAAVE 253

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
           +E D + S     S +   +  SVE++ N S   +     +  K   QG +GHRR S + 
Sbjct: 254 AEPDPETSGALESSPNVKLDLASVEDQPNSSGNGDRLLDADGKKGPGQGNQGHRRGSHSM 313

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+ LLA+VD++CKLVDFGNACWT+KQFTNDIQTRQYRCPEV+LGSKYSTSADLWSFACIC
Sbjct: 314 RQKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACIC 373

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FELATGDVLFDPHSGDN+D+DEDHLALMMELLGMMPRKIALGG+YSR+FFNR+GDLRHIR
Sbjct: 374 FELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGQYSREFFNRYGDLRHIR 433

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWPMNKVLVEKY+F+E+DA DMADFLVPILDFVPEKRPTAAQCL HPW+SAGP L E
Sbjct: 434 RLRFWPMNKVLVEKYEFSEKDANDMADFLVPILDFVPEKRPTAAQCLLHPWISAGPLLLE 493

Query: 302 PSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSD 348
           PSM + + +  E  I E+K+RE++EREAME+G+GN+AI+  SK   D
Sbjct: 494 PSMPSVKIQAGESVICEKKKREKDEREAMEIGMGNIAISADSKPVED 540

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356543526|ref|XP_003540211.1| PREDICTED: serine/threonine-protein kinase SRPK1-like [Glycine max]

 Score =  476 bits (1226), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 283/344 (82%), Gaps = 1/344 (0%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           R+SG+PLILP   DK VT++  + ENKSL GDLTKNQKKK++KKAKKAAQGCAG E  +E
Sbjct: 190 RRSGIPLILPNTKDKTVTKNGITIENKSLNGDLTKNQKKKLRKKAKKAAQGCAGKENAEE 249

Query: 62  SEADSK-PSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRA 120
            E DSK P   D+ S D  P+    E + N  V  ++S++ +E K+  QG  G+RR SR+
Sbjct: 250 VEEDSKAPDEQDDCSNDVKPSVEPGEVKPNSPVRKDQSTKTSENKDIPQGSHGNRRGSRS 309

Query: 121 TRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           TRK LL AVD++CKLVDFGNACWT+KQFTNDIQTRQYRCPEVLLGSKYST ADLWSFACI
Sbjct: 310 TRKKLLEAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 369

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
           CFELA+GDVLFDPHSGDNYD+DEDHLALMMELLGMMPRKIALGG YSRDFFNR+GDLRHI
Sbjct: 370 CFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGCYSRDFFNRYGDLRHI 429

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
           RRLRFWP+NKVL EKYDF+E++A +M DFL+P+LDFVPEKRPTAAQCL HPW SAGPQ  
Sbjct: 430 RRLRFWPLNKVLTEKYDFSEQEANNMTDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPQTL 489

Query: 301 EPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASK 344
           EPS+ A +    EG I E+ +RE+ E+EA+EVG+GNMAI+G  K
Sbjct: 490 EPSLTAVKHDAIEGEISEKMQREKAEQEAVEVGMGNMAIDGNPK 533

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565735|ref|XP_003551093.1| PREDICTED: serine/threonine-protein kinase SRPK2-like [Glycine max]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/345 (70%), Positives = 285/345 (82%), Gaps = 2/345 (0%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RK G+PLILP   DK VT++ A+  NKSL GDLTKNQKKK++KKAKKAAQ CAG E  +E
Sbjct: 190 RKLGIPLILPNTKDKTVTKNGATIANKSLNGDLTKNQKKKLRKKAKKAAQSCAGRENAEE 249

Query: 62  SEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRA 120
           +E DSK S   D+ S D  P+  S E + N  V  +ES++ +E K+  QG  G+RR SR+
Sbjct: 250 AEEDSKASDEQDDCSNDVKPSVESGEVKPNSPVRKDESTKTSENKDIPQGSHGNRRGSRS 309

Query: 121 TRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           TRK LLAAVD++CKLVDFGNACWT+KQFTNDIQTRQYRCPEVLLGSKYST ADLWSFACI
Sbjct: 310 TRKKLLAAVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACI 369

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
           CFELA+GDVLFDPHSGDNYD+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRHI
Sbjct: 370 CFELASGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHI 429

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
           RRLRFWP+NKVL EKYDF+E++A +M DFL+P+LDFVPEKRPTAAQCL HPW SAGP   
Sbjct: 430 RRLRFWPLNKVLTEKYDFSEQEANNMTDFLLPLLDFVPEKRPTAAQCLQHPWFSAGPFTL 489

Query: 301 EPSMAAGEPRE-TEGSIPERKRREQEEREAMEVGVGNMAINGASK 344
           EPS+ A +  +  EG I E+ +RE+ E+EA+EVG+GNMAI+G  K
Sbjct: 490 EPSLTAVKQDDAIEGEIFEKMQREKAEQEAVEVGMGNMAIDGNPK 534

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357440249|ref|XP_003590402.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula] gi|355479450|gb|AES60653.1| Serine/threonine protein kinase SRPK1 [Medicago truncatula]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 223/344 (64%), Positives = 272/344 (79%), Gaps = 8/344 (2%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG PLILP   DK + ES+A+++ K+  GD  KN KK +K+KAK+AA GCA  EA + 
Sbjct: 194 RKSGAPLILPNSKDKTMLESTAARDTKTSNGDFIKNHKKNIKRKAKQAAHGCAEKEASEG 253

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
            + + + S     +V++ PN  S  E+ + S   +  S  + +K   QG   +RR SR  
Sbjct: 254 VDGNHETSG----AVESSPNASSAREQASSSAGTSRLSDADGMKLKEQG---NRRGSRTV 306

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+ LLA+ DV+CKLVDFGNACWT+KQFTNDIQTRQYRCPEV+LGSKYSTSADLWSFACIC
Sbjct: 307 RQKLLASADVKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFACIC 366

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FELATGDVLFDPHSGDN+D+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRHIR
Sbjct: 367 FELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIR 426

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWP+NKVL+EKYDF+E+DA DM+DFLV ILDFVPEKRPTA QCL HPWM+AGP+L E
Sbjct: 427 RLRFWPLNKVLMEKYDFSEKDASDMSDFLVSILDFVPEKRPTAGQCLLHPWMNAGPRLLE 486

Query: 302 PSM-AAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASK 344
           PS+ ++      E +  ++K ++++EREAME G+GN+AIN  SK
Sbjct: 487 PSVPSSNHNPGAETANSDQKNKDKDEREAMEAGIGNIAINSDSK 530

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132112|ref|XP_002328188.1| predicted protein [Populus trichocarpa] gi|222837703|gb|EEE76068.1| predicted protein [Populus trichocarpa]

 Score =  457 bits (1175), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 246/349 (70%), Positives = 288/349 (82%), Gaps = 3/349 (0%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG PLILPT  +K+V ESS+SKE KSL GDLT+NQKKK++KKAKKAAQ C   EA  E
Sbjct: 194 RKSGAPLILPTNKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKKAAQSCTQKEASLE 253

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
           ++AD KPSSP++ + D   N  S EE+ N SV+ ++S+  +  K+  Q  K  RR SR+T
Sbjct: 254 NDADPKPSSPEDSNADVKSNEDSFEEQSNGSVIKDDSANSDGQKDACQA-KRSRRGSRST 312

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+NLLAA D++CKLVDFGNACWT+KQFT+DIQTRQYRCPEVLLGSKYST ADLWSFACIC
Sbjct: 313 RQNLLAAADLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVLLGSKYSTPADLWSFACIC 372

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FEL TGDVLFDPHSGDNYD+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRHIR
Sbjct: 373 FELVTGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIR 432

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWP+ KVL+EKYDF+E+DA DM DFLVPILDFVPEKRPTAAQCL+HPW++AGP+L E
Sbjct: 433 RLRFWPLTKVLMEKYDFSEQDANDMTDFLVPILDFVPEKRPTAAQCLNHPWITAGPRLLE 492

Query: 302 PSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQE 350
           PSM + +      +  E K  E+ EREAME GVGN+ I+GASK S + +
Sbjct: 493 PSMPSVKHEAKNRNTSEIK--EKAEREAMEAGVGNIVIDGASKKSKESQ 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575463|ref|XP_002528633.1| srpk, putative [Ricinus communis] gi|223531922|gb|EEF33736.1| srpk, putative [Ricinus communis]

 Score =  456 bits (1173), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 234/359 (65%), Positives = 284/359 (79%), Gaps = 11/359 (3%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG PLILP+  DK   ES   + N    GDLT+NQKKK+++KAK+AAQGC   EA  E
Sbjct: 201 RKSGAPLILPSSKDKTALESGIVRLN----GDLTRNQKKKIRRKAKRAAQGCVEKEASAE 256

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGV--KGHRRPSR 119
            +AD + S  +  S +   N  S E++  +    + +SR  +   T  G+  +G++R SR
Sbjct: 257 VDADPETSVAEELSANAKTNVGSAEDQPANF---DNTSRPFDADGTKGGLDNQGNKRGSR 313

Query: 120 ATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +TR+ LLA+VD+ CKLVDFGNACWT+KQFTNDIQTRQYRCPEV+LGSKYSTSADLWSFAC
Sbjct: 314 STRQKLLASVDLNCKLVDFGNACWTYKQFTNDIQTRQYRCPEVILGSKYSTSADLWSFAC 373

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           ICFELATGDVLFDPHSGDN+D+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR+GDLRH
Sbjct: 374 ICFELATGDVLFDPHSGDNFDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRH 433

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
           IRRLRFWP+NKVL+EKY+F+E+DA DM DFLVPILDFVPEKRPTAAQCL HPW+S+GP+ 
Sbjct: 434 IRRLRFWPLNKVLMEKYEFSEKDANDMTDFLVPILDFVPEKRPTAAQCLLHPWISSGPRS 493

Query: 300 REPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALKLPK 358
            EPSM + +   +EG +   K+RE++EREAME G+GN+AIN  SKL  D  +++ KL K
Sbjct: 494 LEPSMPSHQNEASEG-VNSEKKREKDEREAMEKGMGNIAINADSKLVKDSPSSS-KLSK 550

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255572994|ref|XP_002527427.1| srpk, putative [Ricinus communis] gi|223533162|gb|EEF34919.1| srpk, putative [Ricinus communis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 231/345 (66%), Positives = 277/345 (80%), Gaps = 2/345 (0%)

Query: 4   SGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESE 63
           S  P I+P   +KV  E +A K +KSL GDLTKNQKKK+KKKAKKAAQ CA  EA +E++
Sbjct: 198 SDAPPIIPNSKNKVAAEPAAPKCSKSLNGDLTKNQKKKIKKKAKKAAQSCAEKEASEENK 257

Query: 64  ADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRK 123
           AD +   P++ + D   N  SV+E  + S++ +E + + E K  +   K  RR SR+TR+
Sbjct: 258 ADPETPGPEDPNTDAKSNKDSVDELSDTSLIKDEPT-NREEKKDAHKEKPRRRGSRSTRQ 316

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
            LLAAVD++CKLVDFGNACWT+KQFT+DIQTRQYRCPEV+LGSKYST AD+WSFACICFE
Sbjct: 317 KLLAAVDLKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVILGSKYSTPADIWSFACICFE 376

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           LATGD+LFDPHSGDNYD+DEDHLALMMELLG MPRKIALGGR+SRDFFNR+GDLRHIRRL
Sbjct: 377 LATGDILFDPHSGDNYDRDEDHLALMMELLGTMPRKIALGGRHSRDFFNRYGDLRHIRRL 436

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
           RFWP+NKVL+EKYD +E+DA DMADFL P+LDFVPEKRPTAAQCLSHPW++AGP+L EPS
Sbjct: 437 RFWPLNKVLMEKYDLSEQDATDMADFLTPLLDFVPEKRPTAAQCLSHPWITAGPRLLEPS 496

Query: 304 MAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSD 348
           M   +   T G++PE K  E  ERE +E GVGNMAI+ A K S +
Sbjct: 497 MPHVQLHATSGNMPENK-SESNEREPIEAGVGNMAIDVAPKPSKE 540

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224102989|ref|XP_002312882.1| predicted protein [Populus trichocarpa] gi|222849290|gb|EEE86837.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1160), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 239/345 (69%), Positives = 290/345 (84%), Gaps = 4/345 (1%)

Query: 2   RKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE 61
           RKSG PLILPT  +K+V ESS+SKE KSL GDLT+NQKKK++KKAKKAAQ CA  EA  E
Sbjct: 194 RKSGAPLILPTSKNKIVAESSSSKEIKSLNGDLTRNQKKKIRKKAKKAAQSCAQKEASSE 253

Query: 62  SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRAT 121
           ++AD KP+SP++ +VD   N  SV+E+ N SV+ ++S+  +  K+  Q  K  RR SR+T
Sbjct: 254 NDADPKPTSPEDSNVDAKSNEDSVDEQSNGSVIKDDSANTDGQKDACQA-KRSRRGSRST 312

Query: 122 RKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           R+ LLAA D++CKLVDFGNACWT+KQFT+D+QTRQYRCPEVLLGSKYST  DLWSFACIC
Sbjct: 313 RQKLLAAADLKCKLVDFGNACWTYKQFTSDVQTRQYRCPEVLLGSKYSTPVDLWSFACIC 372

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           FELATGDVLFDPHSGDNYD+DEDHLALMMELLG+MPRK+ALGGR SRDFFNR+GDLRHIR
Sbjct: 373 FELATGDVLFDPHSGDNYDRDEDHLALMMELLGVMPRKVALGGRNSRDFFNRYGDLRHIR 432

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           RLRFWP+ KVL+EKYDF+E+DA D+ +FLVP+LDFVPEKRPTAAQCL+HPW++AGP+L E
Sbjct: 433 RLRFWPLTKVLMEKYDFSEQDANDLNNFLVPLLDFVPEKRPTAAQCLNHPWIAAGPRLLE 492

Query: 302 PSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLS 346
           PSM + +    +G+I E    E++EREAME G+GN+ I+GASK S
Sbjct: 493 PSMPSFKHETKDGNISE---TEKDEREAMEAGIGNIVIDGASKKS 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	358
TAIR|locus:2082107	534	AT3G44850 [Arabidopsis thalian	0.924	0.619	0.609	1.4e-105
TAIR|locus:2172651	538	AT5G22840 [Arabidopsis thalian	0.932	0.620	0.561	5.8e-98
TAIR|locus:2085151	529	SRPK4 "ser/arg-rich protein ki	0.871	0.589	0.576	2.7e-93
TAIR|locus:2127903	439	AT4G35500 [Arabidopsis thalian	0.519	0.423	0.606	5.4e-65
TAIR|locus:2053938	440	AT2G17530 [Arabidopsis thalian	0.603	0.490	0.531	1.8e-62
ZFIN|ZDB-GENE-070112-2292	658	srpk1b "serine/arginine-rich p	0.474	0.258	0.576	2.3e-60
RGD|1305107	680	Srpk2 "SRSF protein kinase 2"	0.460	0.242	0.593	1.3e-57
UNIPROTKB|E1BR48	648	SRPK2 "Uncharacterized protein	0.460	0.254	0.581	1.3e-57
ZFIN|ZDB-GENE-101025-2	710	srpk3 "serine/arginine-rich pr	0.460	0.232	0.575	6.9e-57
UNIPROTKB|F1ND58	688	SRPK2 "Uncharacterized protein	0.603	0.313	0.502	2.5e-56

TAIR|locus:2082107 AT3G44850 [Arabidopsis thaliana (taxid:3702)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 209/343 (60%), Positives = 246/343 (71%)

Query:     2 RKSGVPLILPTKTDKVVTESSASKENKSL-Y-GDLTKNQXXXXXXXXXXX-XQGCAGTEA 58
             R+SGVPL+LP   DK+V+ES+   E KS  Y GDLTKNQ             Q   G EA
Sbjct:   195 RRSGVPLVLPITKDKIVSESAVKPETKSYTYNGDLTKNQKKKIRKKAKKVVAQDFGGEEA 254

Query:    59 FDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPS 118
              +ESE DS   +  N          +VE  +  S    E     E  N   G +G RR S
Sbjct:   255 LEESERDSNSEARIN-------GNSTVERSEGSSTRLMEGEEAREKANKKNG-RGSRRGS 306

Query:   119 RATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
             R+TR+ LL+ ++ +CKLVDFGNACWT+KQFT+DIQTRQYRCPEV+LGSKYSTSAD+WSFA
Sbjct:   307 RSTRQKLLSDIECKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTSADMWSFA 366

Query:   179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
             CICFELATGDVLFDPHSG+NYD+DEDHLALMMELLGMMPRKIALGGRYSRDFFNR G+LR
Sbjct:   367 CICFELATGDVLFDPHSGENYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRQGELR 426

Query:   239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
             HIRRLRFWP++KVL EKYDF+E+DAKDM+DFLV IL+FVPEKRPTAAQCL HPW + GP+
Sbjct:   427 HIRRLRFWPISKVLKEKYDFSEQDAKDMSDFLVTILEFVPEKRPTAAQCLKHPWFNPGPR 486

Query:   299 LREPSMAAGEPR-ETEGSIPXXXXXXXXXXXXXXVGVGNMAIN 340
             L EPS+   +P+ E EG+                 GVGN+AI+
Sbjct:   487 LLEPSLKPQQPKGEEEGAANENIEKEKDEREAMEAGVGNIAID 529

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2172651 AT5G22840 [Arabidopsis thaliana (taxid:3702)]

 Score = 973 (347.6 bits), Expect = 5.8e-98, P = 5.8e-98
 Identities = 197/351 (56%), Positives = 243/351 (69%)

Query:     1 ARKSGVPLILPTKTDKVVTESSASKENKSLYGDLTKNQXXXXXXXXXXXXQGCAGTEAFD 60
             ARKSG+PL+LPT  DK V E    KE    Y   + +             +   G+E   
Sbjct:   194 ARKSGIPLVLPTVKDKAVPERPVEKEKPKSY-TYSADLTKNQKKKIRKKAKKVEGSE--- 249

Query:    61 ESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRA 120
             E+E DS  S       +  PNG +  ER  +S     S R  + +N SQ  +G+RR S++
Sbjct:   250 ENERDSSNS-------EARPNGNATVERLEES-----SERVKDAENVSQKSRGNRRGSQS 297

Query:   121 TRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
             TR+ LLA VD +CKLVDFGNACWT+KQFT+DIQTRQYRCPEV+LGSKYSTSAD+WSFACI
Sbjct:   298 TRQKLLADVDRKCKLVDFGNACWTYKQFTSDIQTRQYRCPEVVLGSKYSTSADMWSFACI 357

Query:   181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
             CFELATGDVLFDPHSG+N+++DEDHLALMMELLGMMPRKIALGGR+SRDFFNR G+LRHI
Sbjct:   358 CFELATGDVLFDPHSGENFERDEDHLALMMELLGMMPRKIALGGRHSRDFFNRQGELRHI 417

Query:   241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
             RRLRFWP++KVL +KYDF+E DA  M DF+ PIL FVPEKRPTAAQCL+HPW++  P+  
Sbjct:   418 RRLRFWPLSKVLTDKYDFSEEDAIAMQDFITPILQFVPEKRPTAAQCLTHPWLNPVPKSL 477

Query:   301 EPSMAAGEPRETEGSIPXXXXXXXXXXXXXX-VGVGNMAINGASKLSSDQE 350
             +PS +   P+E E                    GVGN+AI+G+ + +S +E
Sbjct:   478 KPSSSPQNPKEEEEEASDEDKDKEKVEREAMEAGVGNIAIDGSERKTSARE 528

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009560 "embryo sac egg cell differentiation" evidence=RCA

TAIR|locus:2085151 SRPK4 "ser/arg-rich protein kinase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 189/328 (57%), Positives = 231/328 (70%)

Query:    32 GDLTKNQXXXXXXXXXXXXQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND 91
             GD  KNQ            QG A  +   ES+      SP N          SVEE   D
Sbjct:   213 GDFVKNQKTGSHRKAKLSAQGHAENKGNTESDKVRGVGSPVNGKQCAAEK--SVEE---D 267

Query:    92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTND 151
                 +++    E+  + +G +G ++ SR++R++L+A+ D++CKLVDFGNACWT+KQFT+D
Sbjct:   268 CPSTSDAI---ELDGSEKGKQGGKKGSRSSRRHLVASADLKCKLVDFGNACWTYKQFTSD 324

Query:   152 IQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME 211
             IQTRQYRCPEV+LGSKYSTSADLWSFACICFEL TGDVLFDPHSGDNYD+DEDHLALMME
Sbjct:   325 IQTRQYRCPEVILGSKYSTSADLWSFACICFELVTGDVLFDPHSGDNYDRDEDHLALMME 384

Query:   212 LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLV 271
             LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL EKY+F+E+DA D++DFLV
Sbjct:   385 LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLTEKYEFSEQDANDLSDFLV 444

Query:   272 PILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAA--GEPRETEGSIPXXXXXXXXXXXX 329
              ILDFVPEKRPTAAQCL HPW+++GP+  +PS+     +  +TE +              
Sbjct:   445 SILDFVPEKRPTAAQCLLHPWINSGPRSIKPSLKDENSDKLDTEKN-----KRENEEQEA 499

Query:   330 XXVGVGNMAINGA-SKLSSDQEAAALKL 356
               V +GN+ I+   SK    Q ++ LKL
Sbjct:   500 VEVKMGNVVISSLDSKPGMSQSSSTLKL 527

GO:0004672 "protein kinase activity" evidence=IEA;IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;IDA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IDA

TAIR|locus:2127903 AT4G35500 [Arabidopsis thaliana (taxid:3702)]

 Score = 641 (230.7 bits), Expect = 5.4e-65, Sum P(2) = 5.4e-65
 Identities = 114/188 (60%), Positives = 144/188 (76%)

Query:   111 VKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYST 170
             V G    S+ T K+L   +D++CK+VDFGNACW  KQF  +IQTRQYR PEV+L S YS 
Sbjct:   237 VTGEEASSK-TEKSL-DGIDMRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILKSGYSF 294

Query:   171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
             S D+WSF C  FEL TGD+LF P  G+ Y +DEDHLALMMELLG MPRKIA+GG  S+D+
Sbjct:   295 SVDMWSFGCTAFELVTGDMLFAPKDGNGYGEDEDHLALMMELLGKMPRKIAIGGAKSKDY 354

Query:   231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
             F+RHGDL+ IRRL++WP++++L++KY   E +AK+ A+FL PIL+F PEKRPTA QCL H
Sbjct:   355 FDRHGDLKRIRRLKYWPLDRLLIDKYKLPEAEAKEFAEFLTPILEFAPEKRPTAQQCLDH 414

Query:   291 PWMSAGPQ 298
             PWM+   Q
Sbjct:   415 PWMNVTTQ 422

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2053938 AT2G17530 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 119/224 (53%), Positives = 153/224 (68%)

Query:    86 EERQNDSVVNN--ESSRDNEVKNTSQGVKGHRRP----SRATRKNL--LAAVDVQCKLVD 137
             E  QN +   N  E       K  +  + G R      S   +KN   L  +D++CK+VD
Sbjct:   200 EGNQNGTSTMNLIEKKLKRRAKKAAAKISGRRVSIVGLSETPKKNKRNLDGIDMRCKVVD 259

Query:   138 FGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGD 197
             FGN CW   +F  +IQTRQYR PEV+L S YS S D+WSFAC  FELATGD+LF P  G+
Sbjct:   260 FGNGCWADNKFAEEIQTRQYRAPEVILQSGYSYSVDMWSFACTAFELATGDMLFAPKEGN 319

Query:   198 NYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYD 257
              Y +DEDHLALMMELLG MPRKIA+GG  S+D+F+RHGDL+ IRRL++WP++++L++KY 
Sbjct:   320 GYGEDEDHLALMMELLGKMPRKIAIGGARSKDYFDRHGDLKRIRRLKYWPLDRLLIDKYK 379

Query:   258 FNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
               E +A++ ADFL PI+DF PEKRPTA QCL HPW++   Q  E
Sbjct:   380 LPEAEAREFADFLCPIMDFAPEKRPTAQQCLQHPWLNLRTQNNE 423

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

ZFIN|ZDB-GENE-070112-2292 srpk1b "serine/arginine-rich protein specific kinase 1b" [Danio rerio (taxid:7955)]

 Score = 584 (210.6 bits), Expect = 2.3e-60, Sum P(2) = 2.3e-60
 Identities = 98/170 (57%), Positives = 136/170 (80%)

Query:   126 LAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELA 185
             L A  +Q K+ D GNACW HK FT+DIQTRQYR  EVL+G+ Y T AD+WS AC+ FELA
Sbjct:   489 LNAEKIQVKIADLGNACWVHKHFTDDIQTRQYRSLEVLIGTGYGTPADIWSTACMAFELA 548

Query:   186 TGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF 245
             TGD LF+PHSG++Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDLRHI +L+ 
Sbjct:   549 TGDYLFEPHSGEDYSRDEDHIALIIELLGKIPRKLVMNGKYSKEFFTKKGDLRHITKLKP 608

Query:   246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
             W +  VLVEKY+++  +A++ +DFL+P+LD +PEKR TAA+CL H W+++
Sbjct:   609 WGLQDVLVEKYEWHREEAQNFSDFLLPMLDLIPEKRATAAECLRHSWINS 658

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

RGD|1305107 Srpk2 "SRSF protein kinase 2" [Rattus norvegicus (taxid:10116)]

 Score = 572 (206.4 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 98/165 (59%), Positives = 128/165 (77%)

Query:   131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
             ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD L
Sbjct:   516 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 575

Query:   191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
             F+PHSG++Y +DEDH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L+ W +  
Sbjct:   576 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 635

Query:   251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
             VLVEKY +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct:   636 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 680

GO:0000245 "spliceosomal complex assembly" evidence=ISO

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0001525 "angiogenesis" evidence=ISO

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=ISO

GO:0007243 "intracellular protein kinase cascade" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

GO:0010628 "positive regulation of gene expression" evidence=ISO

GO:0035063 "nuclear speck organization" evidence=ISO

GO:0043525 "positive regulation of neuron apoptotic process" evidence=ISO

GO:0045070 "positive regulation of viral genome replication" evidence=ISO

GO:0045071 "negative regulation of viral genome replication" evidence=ISO

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0071889 "14-3-3 protein binding" evidence=ISO

UNIPROTKB|E1BR48 SRPK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 565 (203.9 bits), Expect = 1.3e-57, Sum P(2) = 1.3e-57
 Identities = 96/165 (58%), Positives = 129/165 (78%)

Query:   131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
             ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD L
Sbjct:   484 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 543

Query:   191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
             F+PHSG++Y +DEDH+AL++ELLG +PRK A+ G+YS++FF + G+LRHI +L+ W +  
Sbjct:   544 FEPHSGEDYSRDEDHIALIIELLGKIPRKYAMLGKYSKEFFTKKGELRHITKLKPWSLFD 603

Query:   251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
             VLVEKY +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct:   604 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 648

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-101025-2 srpk3 "serine/arginine-rich protein specific kinase 3" [Danio rerio (taxid:7955)]

 Score = 552 (199.4 bits), Expect = 6.9e-57, Sum P(2) = 6.9e-57
 Identities = 95/165 (57%), Positives = 127/165 (76%)

Query:   131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
             +  K+ D GNACW HK FT DIQTRQYR  EVL+G++Y   AD+WS AC+ FELATGD L
Sbjct:   546 ISIKIADLGNACWVHKHFTEDIQTRQYRALEVLIGAEYGPPADIWSTACMAFELATGDYL 605

Query:   191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
             F+PHSG++Y +DEDH+A ++ELLG +P   AL GRYSR++FNR G+LRHI  L+ W + +
Sbjct:   606 FEPHSGEDYTRDEDHIAHIIELLGAIPPHFALSGRYSREYFNRRGELRHIANLKPWGLFE 665

Query:   251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
             VL+EKY++    A   +DFL+ +L+F+PEKR TAAQCL HPW+++
Sbjct:   666 VLLEKYEWPLDQAAQFSDFLLTMLEFIPEKRATAAQCLQHPWINS 710

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1ND58 SRPK2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 110/219 (50%), Positives = 148/219 (67%)

Query:    79 IPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNL--LAAVDVQCKLV 136
             +  G +V ER+  S  +++ SR     +T    K   R +      L    A  ++ K+ 
Sbjct:   471 VSEGSTVTEREESSP-SHDRSRTVSASSTGDLPKTKTRAADLLVNPLDPRNADKIRVKIA 529

Query:   137 DFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSG 196
             D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD LF+PHSG
Sbjct:   530 DLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYLFEPHSG 589

Query:   197 DNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY 256
             ++Y +DEDH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L+ W +  VLVEKY
Sbjct:   590 EDYSRDEDHIAHIIELLGNIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFDVLVEKY 649

Query:   257 DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct:   650 GWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 688

GO:0000245 "spliceosomal complex assembly" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0001525 "angiogenesis" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007243 "intracellular protein kinase cascade" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

GO:0010628 "positive regulation of gene expression" evidence=IEA

GO:0035063 "nuclear speck organization" evidence=IEA

GO:0043525 "positive regulation of neuron apoptotic process" evidence=IEA

GO:0045070 "positive regulation of viral genome replication" evidence=IEA

GO:0045071 "negative regulation of viral genome replication" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0071889 "14-3-3 protein binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.11	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	358
cd07829	282	cd07829, STKc_CDK_like, Catalytic domain of Cyclin	6e-24
smart00220	254	smart00220, S_TKc, Serine/Threonine protein kinase	2e-23
pfam00069	260	pfam00069, Pkinase, Protein kinase domain	9e-23
cd07834	330	cd07834, STKc_MAPK, Catalytic domain of the Serine	1e-21
cd07841	298	cd07841, STKc_CDK7, Catalytic domain of the Serine	2e-20
PTZ00284	467	PTZ00284, PTZ00284, protein kinase; Provisional	1e-18
cd07833	288	cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dep	3e-18
cd07836	284	cd07836, STKc_Pho85, Catalytic domain of the Serin	5e-18
cd07852	337	cd07852, STKc_MAPK15, Catalytic domain of the Seri	2e-17
cd07849	336	cd07849, STKc_ERK1_2_like, Catalytic domain of Ext	2e-17
cd07838	287	cd07838, STKc_CDK4_6_like, Catalytic domain of Cyc	3e-17
cd07858	337	cd07858, STKc_TEY_MAPK_plant, Catalytic domain of	1e-16
cd07851	343	cd07851, STKc_p38, Catalytic domain of the Serine/	1e-16
cd07830	283	cd07830, STKc_MAK_like, Catalytic domain of Male g	2e-16
cd07845	309	cd07845, STKc_CDK10, Catalytic domain of the Serin	2e-15
cd05118	283	cd05118, STKc_CMGC, Catalytic domain of CMGC famil	9e-15
cd07844	291	cd07844, STKc_PCTAIRE_like, Catalytic domain of PC	1e-14
cd07866	311	cd07866, STKc_BUR1, Catalytic domain of the Serine	1e-14
cd07832	286	cd07832, STKc_CCRK, Catalytic domain of the Serine	2e-14
cd07857	332	cd07857, STKc_MPK1, Catalytic domain of the Serine	3e-14
cd07855	334	cd07855, STKc_ERK5, Catalytic domain of the Serine	3e-14
cd07859	338	cd07859, STKc_TDY_MAPK_plant, Catalytic domain of	3e-14
cd07880	343	cd07880, STKc_p38gamma_MAPK12, Catalytic domain of	4e-14
cd07853	372	cd07853, STKc_NLK, Catalytic domain of the Serine/	6e-14
cd07840	287	cd07840, STKc_CDK9_like, Catalytic domain of Cycli	1e-13
cd05122	253	cd05122, PKc_STE, Catalytic domain of STE family P	2e-13
cd06606	260	cd06606, STKc_MAPKKK, Catalytic domain of the Prot	3e-13
cd07843	293	cd07843, STKc_CDC2L1, Catalytic domain of the Seri	7e-13
cd07856	328	cd07856, STKc_Sty1_Hog1, Catalytic domain of the S	1e-12
cd07864	302	cd07864, STKc_CDK12, Catalytic domain of the Serin	2e-12
cd07876	359	cd07876, STKc_JNK2, Catalytic domain of the Serine	2e-12
cd07877	345	cd07877, STKc_p38alpha_MAPK14, Catalytic domain of	2e-12
cd07878	343	cd07878, STKc_p38beta_MAPK11, Catalytic domain of	4e-12
cd07848	287	cd07848, STKc_CDKL5, Catalytic domain of the Serin	5e-12
cd07831	282	cd07831, STKc_MOK, Catalytic domain of the Serine/	5e-12
cd07842	316	cd07842, STKc_CDK8_like, Catalytic domain of Cycli	5e-12
cd07860	284	cd07860, STKc_CDK2_3, Catalytic domain of the Seri	2e-11
cd07879	342	cd07879, STKc_p38delta_MAPK13, Catalytic domain of	2e-11
cd07873	301	cd07873, STKc_PCTAIRE1, Catalytic domain of the Se	2e-11
cd07846	286	cd07846, STKc_CDKL2_3, Catalytic domain of the Ser	3e-11
cd07835	283	cd07835, STKc_CDK1_like, Catalytic domain of Cycli	5e-11
cd07863	288	cd07863, STKc_CDK4, Catalytic domain of the Serine	6e-11
cd07872	309	cd07872, STKc_PCTAIRE2, Catalytic domain of the Se	8e-11
cd00180	215	cd00180, PKc, Catalytic domain of Protein Kinases	1e-10
PTZ00024	335	PTZ00024, PTZ00024, cyclin-dependent protein kinas	1e-10
cd07837	295	cd07837, STKc_CdkB_plant, Catalytic domain of the	1e-10
COG0515	384	COG0515, SPS1, Serine/threonine protein kinase [Ge	1e-10
cd07850	353	cd07850, STKc_JNK, Catalytic domain of the Serine/	2e-10
cd07861	285	cd07861, STKc_CDK1_euk, Catalytic domain of the Se	2e-10
cd07871	288	cd07871, STKc_PCTAIRE3, Catalytic domain of the Se	2e-10
cd07854	342	cd07854, STKc_MAPK4_6, Catalytic domain of the Ser	5e-10
cd07874	355	cd07874, STKc_JNK3, Catalytic domain of the Serine	5e-10
cd07862	290	cd07862, STKc_CDK6, Catalytic domain of the Serine	2e-09
cd05123	250	cd05123, STKc_AGC, Catalytic domain of AGC family	5e-09
cd07839	284	cd07839, STKc_CDK5, Catalytic domain of the Serine	7e-09
cd07875	364	cd07875, STKc_JNK1, Catalytic domain of the Serine	9e-09
PLN00009	294	PLN00009, PLN00009, cyclin-dependent kinase A; Pro	4e-08
cd08215	258	cd08215, STKc_Nek, Catalytic domain of the Protein	5e-08
cd06626	264	cd06626, STKc_MEKK4, Catalytic domain of the Prote	1e-07
cd05581	280	cd05581, STKc_PDK1, Catalytic domain of the Protei	1e-07
cd06615	308	cd06615, PKc_MEK, Catalytic domain of the dual-spe	1e-07
cd07847	286	cd07847, STKc_CDKL1_4, Catalytic domain of the Ser	1e-07
cd06605	265	cd06605, PKc_MAPKK, Catalytic domain of the dual-s	3e-07
cd05572	262	cd05572, STKc_cGK_PKG, Catalytic domain of the Pro	3e-07
cd06623	264	cd06623, PKc_MAPKK_plant_like, Catalytic domain of	4e-07
cd07869	303	cd07869, STKc_PFTAIRE1, Catalytic domain of the Se	4e-07
cd06614	286	cd06614, STKc_PAK, Catalytic domain of the Protein	5e-07
cd05600	333	cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fun	6e-07
cd08217	265	cd08217, STKc_Nek2, Catalytic domain of the Protei	1e-06
cd06609	274	cd06609, STKc_MST3_like, Catalytic domain of Mamma	1e-06
PHA03209	357	PHA03209, PHA03209, serine/threonine kinase US3; P	2e-06
cd07870	291	cd07870, STKc_PFTAIRE2, Catalytic domain of the Se	2e-06
cd05579	265	cd05579, STKc_MAST_like, Catalytic domain of Micro	4e-06
cd06612	256	cd06612, STKc_MST1_2, Catalytic domain of the Prot	4e-06
cd07865	310	cd07865, STKc_CDK9, Catalytic domain of the Serine	5e-06
cd06630	268	cd06630, STKc_MEKK1, Catalytic domain of the Prote	5e-06
PTZ00036	440	PTZ00036, PTZ00036, glycogen synthase kinase; Prov	8e-06
cd05578	258	cd05578, STKc_Yank1, Catalytic domain of the Prote	1e-05
cd06631	265	cd06631, STKc_YSK4, Catalytic domain of the Protei	2e-05
cd05620	316	cd05620, STKc_nPKC_delta, Catalytic domain of the	2e-05
cd06627	254	cd06627, STKc_Cdc7_like, Catalytic domain of Cell	3e-05
cd07867	317	cd07867, STKc_CDC2L6, Catalytic domain of Serine/T	4e-05
cd06620	284	cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of	4e-05
cd08528	269	cd08528, STKc_Nek10, Catalytic domain of the Prote	5e-05
cd05633	279	cd05633, STKc_GRK3, Catalytic domain of the Protei	5e-05
cd05619	316	cd05619, STKc_nPKC_theta, Catalytic domain of the	6e-05
cd05577	277	cd05577, STKc_GRK, Catalytic domain of the Protein	7e-05
cd05570	318	cd05570, STKc_PKC, Catalytic domain of the Protein	7e-05
cd05607	277	cd05607, STKc_GRK7, Catalytic domain of the Protei	8e-05
cd06619	279	cd06619, PKc_MKK5, Catalytic domain of the dual-sp	9e-05
cd05592	316	cd05592, STKc_nPKC_theta_delta, Catalytic domain o	1e-04
cd05606	278	cd05606, STKc_beta_ARK, Catalytic domain of the Pr	1e-04
cd08530	256	cd08530, STKc_CNK2-like, Catalytic domain of the P	2e-04
cd07868	317	cd07868, STKc_CDK8, Catalytic domain of the Serine	2e-04
cd06621	287	cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of	2e-04
cd06917	277	cd06917, STKc_NAK1_like, Catalytic domain of Funga	3e-04
cd05573	350	cd05573, STKc_ROCK_NDR_like, Catalytic domain of R	4e-04
cd06644	292	cd06644, STKc_STK10_LOK, Catalytic domain of the P	7e-04
cd05611	260	cd05611, STKc_Rim15_like, Catalytic domain of fung	8e-04
cd06649	331	cd06649, PKc_MEK2, Catalytic domain of the dual-sp	8e-04
cd06613	262	cd06613, STKc_MAP4K3_like, Catalytic domain of Mit	8e-04
cd05580	290	cd05580, STKc_PKA, Catalytic domain of the Protein	9e-04
cd05618	329	cd05618, STKc_aPKC_iota, Catalytic domain of the P	0.001
smart00219	257	smart00219, TyrKc, Tyrosine kinase, catalytic doma	0.001
smart00221	258	smart00221, STYKc, Protein kinase; unclassified sp	0.001
cd06629	272	cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain o	0.002
cd06650	333	cd06650, PKc_MEK1, Catalytic domain of the dual-sp	0.002
PHA03212	391	PHA03212, PHA03212, serine/threonine kinase US3; P	0.002
cd06624	268	cd06624, STKc_ASK, Catalytic domain of the Protein	0.002
cd06611	280	cd06611, STKc_SLK_like, Catalytic domain of Ste20-	0.002
cd06640	277	cd06640, STKc_MST4, Catalytic domain of the Protei	0.002
cd06632	258	cd06632, STKc_MEKK1_plant, Catalytic domain of the	0.003
cd06610	267	cd06610, STKc_OSR1_SPAK, Catalytic domain of the P	0.003
cd05582	318	cd05582, STKc_RSK_N, N-terminal catalytic domain o	0.003
cd05032	277	cd05032, PTKc_InsR_like, Catalytic domain of Insul	0.004
cd05083	254	cd05083, PTKc_Chk, Catalytic domain of the Protein	0.004

>gnl|CDD|173733 cd07829, STKc_CDK_like, Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

 Score = 99.1 bits (248), Expect = 6e-24
 Identities = 58/190 (30%), Positives = 85/190 (44%), Gaps = 40/190 (21%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA-CWTH--KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      N+L   D   KL DFG A  +    + +T+++ T  YR PE+LLGSK 
Sbjct: 121 HRDLKPQ-----NILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKH 175

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG---- 223
           YST+ D+WS  CI  E+ TG  LF    GD+   + D L  + ++LG    +   G    
Sbjct: 176 YSTAVDIWSVGCIFAEMITGKPLF---PGDS---EIDQLFKIFQILGTPTEESWPGVTKL 229

Query: 224 GRYSRDFFNRHG-DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
             Y   F      DL  +            + + D       +  D L  +L + P KR 
Sbjct: 230 PDYKPTFPKFPPKDLEKV------------LPRLD------PEGIDLLSKMLQYNPAKRI 271

Query: 283 TAAQCLSHPW 292
           +A + L HP+
Sbjct: 272 SAKEALKHPY 281

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the early G1 phase by CDK4 or CDK6, the G1/S phase transition by CDK2, or the entry of mitosis by CDK1. They also exhibit overlapping cyclin specificity and functions in certain conditions. Knockout mice with a single CDK deleted remain viable with specific phenotypes, showing that some CDKs can compensate for each other. For example, CDK4 can compensate for the loss of CDK6, however, double knockout mice with both CDK4 and CDK6 deleted die in utero. CDK8 and CDK9 are mainly involved in transcription while CDK5 is implicated in neuronal function. CDK7 plays essential roles in both the cell cycle as a CDK-Activating Kinase (CAK) and in transcription as a component of the general transcription factor TFIIH. Length = 282

>gnl|CDD|214567 smart00220, S_TKc, Serine/Threonine protein kinases, catalytic domain

 Score = 97.2 bits (243), Expect = 2e-23
 Identities = 44/172 (25%), Positives = 61/172 (35%), Gaps = 46/172 (26%)

Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N+L   D   KL DFG A      +     + T +Y  PEVLLG  Y  + D+WS   I 
Sbjct: 127 NILLDEDGHVKLADFGLARQLDPGEKLTTFVGTPEYMAPEVLLGKGYGKAVDIWSLGVIL 186

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +EL TG   F           +D L  + + +G                           
Sbjct: 187 YELLTGKPPFP---------GDDQLLELFKKIGKPKPPF--------------------- 216

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                P   +          +AK   D +  +L   PEKR TA + L HP+ 
Sbjct: 217 ---PPPEWDI--------SPEAK---DLIRKLLVKDPEKRLTAEEALQHPFF 254

Phosphotransferases. Serine or threonine-specific kinase subfamily. Length = 254

>gnl|CDD|215690 pfam00069, Pkinase, Protein kinase domain

 Score = 95.4 bits (238), Expect = 9e-23
 Identities = 43/174 (24%), Positives = 60/174 (34%), Gaps = 45/174 (25%)

Query: 124 NLLAAVDVQCKLVDFGNAC--WTHKQFTNDIQ-TRQYRCPEVLLGSK-YSTSADLWSFAC 179
           N+L   +   K+ DFG A               T  Y  PEVLLG   Y    D+WS   
Sbjct: 128 NILLDENGVVKIADFGLAKKLLKSSSSLTTFVGTPWYMAPEVLLGGNGYGPKVDVWSLGV 187

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I +EL TG   F   +  +           ++L+    R+I LG     D          
Sbjct: 188 ILYELLTGKPPFSGENILD----------QLQLI----RRI-LGPPLEFDEPKWS----- 227

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                                  +++  D +   L+  P KRPTA + L HPW 
Sbjct: 228 ---------------------SGSEEAKDLIKKCLNKDPSKRPTAEEILQHPWF 260

Length = 260

>gnl|CDD|173737 cd07834, STKc_MAPK, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

 Score = 93.7 bits (234), Expect = 1e-21
 Identities = 62/209 (29%), Positives = 90/209 (43%), Gaps = 37/209 (17%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA------CWTHKQFTNDIQTRQYRCPEVLLG 165
           HR  +PS     N+L   +   K+ DFG A             T  + TR YR PE+LL 
Sbjct: 126 HRDLKPS-----NILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLS 180

Query: 166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG 224
           S  Y+ + D+WS  CI  EL T   LF    G +Y    D L L++E+LG    +     
Sbjct: 181 SSRYTKAIDIWSVGCIFAELLTRKPLF---PGRDY---IDQLNLIVEVLGTPSEE----- 229

Query: 225 RYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA 284
                F        +++ L   P    L + +     +A D    L  +L F P+KR TA
Sbjct: 230 --DLKFITSEKARNYLKSLPKKPKKP-LSKLFPGASPEAID---LLEKMLVFDPKKRITA 283

Query: 285 AQCLSHPWMSAGPQLREPSMAAGEPRETE 313
            + L+HP+++   QL +P     EP    
Sbjct: 284 DEALAHPYLA---QLHDPE---DEPVAKP 306

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPK kinase (MAP2K or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAP3K or MKKK). Each cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. There are three main typical MAPK subfamilies: Extracellular signal-Regulated Kinase (ERK), c-Jun N-terminal Kinase (JNK), and p38. Some MAPKs are atypical in that they are not regulated by MAP2Ks. These include MAPK4, MAPK6, NLK, and ERK7. Length = 330

>gnl|CDD|143346 cd07841, STKc_CDK7, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

 Score = 89.9 bits (224), Expect = 2e-20
 Identities = 56/189 (29%), Positives = 72/189 (38%), Gaps = 46/189 (24%)

Query: 124 NLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           NLL A D   KL DFG A      +++ T+ + TR YR PE+L G++ Y    D+WS  C
Sbjct: 132 NLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGARHYGVGVDMWSVGC 191

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  EL           GD+   D D L  + E LG  P +                    
Sbjct: 192 IFAELLLRVPFLP---GDS---DIDQLGKIFEALG-TPTE-------------------- 224

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAK-----------DMADFLVPILDFVPEKRPTAAQCL 288
                 WP    L +  +F                 D  D L  +L   P KR TA Q L
Sbjct: 225 ----ENWPGVTSLPDYVEFKPFPPTPLKQIFPAASDDALDLLQRLLTLNPNKRITARQAL 280

Query: 289 SHPWMSAGP 297
            HP+ S  P
Sbjct: 281 EHPYFSNDP 289

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is also a component of the general transcription factor TFIIH, which phosphorylates the C-terminal domain (CTD) of RNA polymerase II when it is bound with unphosphorylated DNA, as present in the pre-initiation complex. Following phosphorylation, the CTD dissociates from the DNA which allows transcription initiation. Length = 298

>gnl|CDD|140307 PTZ00284, PTZ00284, protein kinase; Provisional

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 55/169 (32%), Positives = 84/169 (49%), Gaps = 24/169 (14%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++ D G  C      T  + TR YR PEV+LG  +  S D+WS  CI +EL TG +L+D 
Sbjct: 288 RICDLGGCCDERHSRTAIVSTRHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDT 347

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIAL--GGRYSRDFFNRHGDLR------HIRRL-R 244
           H  DN     +HL LM + LG +P + A   G   +R  +N  G LR      H+ R+ R
Sbjct: 348 H--DNL----EHLHLMEKTLGRLPSEWAGRCGTEEARLLYNSAGQLRPCTDPKHLARIAR 401

Query: 245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             P+ +V+ +           + D +  +L +  +KR  A Q  +HP++
Sbjct: 402 ARPVREVIRDDL---------LCDLIYGLLHYDRQKRLNARQMTTHPYV 441

Length = 467

>gnl|CDD|143338 cd07833, STKc_CDKL, Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

 Score = 83.5 bits (207), Expect = 3e-18
 Identities = 49/175 (28%), Positives = 75/175 (42%), Gaps = 23/175 (13%)

Query: 124 NLLAAVDVQCKLVDFGNA----CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           N+L +     KL DFG A           T+ + TR YR PE+L+G   Y    D+W+  
Sbjct: 130 NILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGKPVDVWAIG 189

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDL 237
           CI  EL  G+ LF    GD+   D D L L+ + LG + P    L        F+ +   
Sbjct: 190 CIMAELLDGEPLF---PGDS---DIDQLYLIQKCLGPLPPSHQEL--------FSSN--- 232

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                + F   ++    +  +  + +    DFL   L   P++R T  + L HP+
Sbjct: 233 PRFAGVAFPEPSQPESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPY 287

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning and memory. Length = 288

>gnl|CDD|143341 cd07836, STKc_Pho85, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

 Score = 82.9 bits (205), Expect = 5e-18
 Identities = 59/180 (32%), Positives = 76/180 (42%), Gaps = 35/180 (19%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL     + KL DFG A         F+N++ T  YR P+VLLGS+ YSTS D+WS  
Sbjct: 129 QNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTYSTSIDIWSVG 188

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIALGGRYSRDFFNR 233
           CI  E+ TG  LF    G N   +ED L  +  ++G       P  I+    Y   F   
Sbjct: 189 CIMAEMITGRPLF---PGTN---NEDQLLKIFRIMGTPTESTWPG-ISQLPEYKPTFPRY 241

Query: 234 -HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
              DL+             L    D          D L  +L   PE R +A   L HPW
Sbjct: 242 PPQDLQ------------QLFPHAD------PLGIDLLHRLLQLNPELRISAHDALQHPW 283

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment. It is not essential for yeast viability and is the functional homolog of mammalian CDK5, which plays a role in central nervous system development. Length = 284

>gnl|CDD|173747 cd07852, STKc_MAPK15, Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 56/194 (28%), Positives = 84/194 (43%), Gaps = 37/194 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA--------CWTHKQFTNDIQTRQYRCPEVL 163
           HR  +PS     N+L   D + KL DFG A           +   T+ + TR YR PE+L
Sbjct: 130 HRDLKPS-----NILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEIL 184

Query: 164 LGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK--I 220
           LGS +Y+   D+WS  CI  E+  G  LF   S  N       L  ++E++G    +   
Sbjct: 185 LGSTRYTKGVDMWSVGCILGEMLLGKPLFPGTSTLN------QLEKIIEVIGPPSAEDIE 238

Query: 221 ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK 280
           ++   ++    +     R  + L        L+ K         D  D L  +L F P K
Sbjct: 239 SIKSPFAATMLDSLP-SRPRKPL------DELLPKAS------DDALDLLKKLLVFNPNK 285

Query: 281 RPTAAQCLSHPWMS 294
           R TA + L HP+++
Sbjct: 286 RLTAEEALEHPYVA 299

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimuli whereas ERK8 shows low basal activity and is activated by DNA-damaging agents. ERK7 and ERK8 also have different substrate profiles. Genome analysis shows that they are orthologs with similar gene structures. ERK7 and ERK 8 may be involved in the signaling of some nuclear receptor transcription factors. ERK7 regulates hormone-dependent degradation of estrogen receptor alpha while ERK8 down-regulates the transcriptional co-activation androgen and glucocorticoid receptors. Length = 337

>gnl|CDD|143354 cd07849, STKc_ERK1_2_like, Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

 Score = 81.6 bits (202), Expect = 2e-17
 Identities = 65/194 (33%), Positives = 90/194 (46%), Gaps = 37/194 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLG 165
           HR  +PS     NLL   +   K+ DFG A        H  F T  + TR YR PE++L 
Sbjct: 129 HRDLKPS-----NLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLN 183

Query: 166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG 224
           SK Y+ + D+WS  CI  E+ +   LF    G +Y      L L++ +LG  P       
Sbjct: 184 SKGYTKAIDIWSVGCILAEMLSNRPLF---PGKDY---LHQLNLILGVLG-TP------- 229

Query: 225 RYSRDFFNRHGDLR---HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR 281
             S++  N    LR   +I+ L F P  KV   K  F   D K + D L  +L F P KR
Sbjct: 230 --SQEDLNCIISLRARNYIKSLPFKP--KVPWNKL-FPNADPKAL-DLLDKMLTFNPHKR 283

Query: 282 PTAAQCLSHPWMSA 295
            T  + L+HP++  
Sbjct: 284 ITVEEALAHPYLEQ 297

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase kinase from the Raf family. ERK1/2 have numerous substrates, many of which are nuclear and participate in transcriptional regulation of many cellular processes. They regulate cell growth, cell proliferation, and cell cycle progression from G1 to S phase. Although the distinct roles of ERK1 and ERK2 have not been fully determined, it is known that ERK2 can maintain most functions in the absence of ERK1, and that the deletion of ERK2 is embryonically lethal. The MAPK, Fus3, regulates yeast mating processes including mating-specific gene expression, G1 arrest, mating projection, and cell fusion. Length = 336

>gnl|CDD|173739 cd07838, STKc_CDK4_6_like, Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

 Score = 80.4 bits (199), Expect = 3e-17
 Identities = 52/177 (29%), Positives = 74/177 (41%), Gaps = 35/177 (19%)

Query: 124 NLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N+L   D Q K+ DFG A    +     T+ + T  YR PEVLL S Y+T  D+WS  CI
Sbjct: 137 NILVTSDGQVKIADFGLARIYSFEMA-LTSVVVTLWYRAPEVLLQSSYATPVDMWSVGCI 195

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGRYSRDFFNRHG 235
             EL     LF   S      + D L  + +++G+      PR ++L     R  F    
Sbjct: 196 FAELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSL----PRSSFPS-- 243

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                R          + E         ++  D L  +L F P KR +A + L HP+
Sbjct: 244 --YTPR-----SFKSFVPEI-------CEEGLDLLKKMLTFNPHKRISAFEALQHPY 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both expressed ubiquitously, associate with all three D cyclins (D1, D2 and D3), and phosphorylate the retinoblastoma (pRb) protein. They are also regulated by the INK4 family of inhibitors which associate with either the CDK alone or the CDK/cyclin complex. CDK4 and CDK6 show differences in subcellular localization, sensitivity to some inhibitors, timing in activation, tumor selectivity, and possibly substrate profiles. Although CDK4 and CDK6 seem to show some redundancy, they also have discrete, nonoverlapping functions. CDK6 plays an important role in cell differentiation. Length = 287

>gnl|CDD|143363 cd07858, STKc_TEY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 68/200 (34%), Positives = 91/200 (45%), Gaps = 39/200 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLG-SK 167
           HR  +PS     NLL   +   K+ DFG A          T  + TR YR PE+LL  S+
Sbjct: 131 HRDLKPS-----NLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCSE 185

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDH-LALMMELLGMMPRKIALGGRY 226
           Y+T+ D+WS  CI  EL     LF         KD  H L L+ ELLG  P +  LG   
Sbjct: 186 YTTAIDVWSVGCIFAELLGRKPLFP-------GKDYVHQLKLITELLG-SPSEEDLG--- 234

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPT 283
              F       R+IR L + P       +  F      A  +A D L  +L F P KR T
Sbjct: 235 ---FIRNEKARRYIRSLPYTP-------RQSFARLFPHANPLAIDLLEKMLVFDPSKRIT 284

Query: 284 AAQCLSHPWMSAGPQLREPS 303
             + L+HP++++   L +PS
Sbjct: 285 VEEALAHPYLAS---LHDPS 301

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. This subfamily represents the TEY subtype and is further subdivided into three groups (A, B, and C). Group A is represented by AtMPK3, AtMPK6, Nicotiana tabacum BTF4 (NtNTF4), among others. They are mostly involved in environmental and hormonal responses. AtMPK3 and AtMPK6 are also key regulators for stomatal development and patterning. Group B is represented by AtMPK4, AtMPK13, and NtNTF6, among others. They may be involved in both cell division and environmental stress response. AtMPK4 also participates in regulating innate immunity. Group C is represented by AtMPK1, AtMPK2, NtNTF3, Oryza sativa MAPK4 (OsMAPK4), among others. They may also be involved in stress responses. AtMPK1 and AtMPK2 are activated following mechanical injury and in the presence of stress chemicals such as jasmonic acid, hydrogen peroxide and abscisic acid. OsMAPK4 is also called OsMSRMK3 for Multiple Stress-Responsive MAPK3. Length = 337

>gnl|CDD|143356 cd07851, STKc_p38, Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

 Score = 79.3 bits (196), Expect = 1e-16
 Identities = 59/188 (31%), Positives = 87/188 (46%), Gaps = 33/188 (17%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYST 170
           HR  +PS     N+    D + K++DFG A  T  + T  + TR YR PE++L    Y+ 
Sbjct: 141 HRDLKPS-----NIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQ 195

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
           + D+WS  CI  EL TG  LF    G ++    D L  +M L+G  P           + 
Sbjct: 196 TVDIWSVGCIMAELLTGKTLF---PGSDHI---DQLKRIMNLVG-TP---------DEEL 239

Query: 231 FNRHGDLRHIRR-LRFWPMNKVLVEKYDFNE--RDAKDMA-DFLVPILDFVPEKRPTAAQ 286
             +       R  ++  P       K DF E    A  +A D L  +L   P+KR TAA+
Sbjct: 240 LQKI-SSESARNYIQSLPQMP----KKDFKEVFSGANPLAIDLLEKMLVLDPDKRITAAE 294

Query: 287 CLSHPWMS 294
            L+HP+++
Sbjct: 295 ALAHPYLA 302

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. p38 substrates include other protein kinases and factors that regulate transcription, nuclear export, mRNA stability and translation. p38 kinases are drug targets for the inflammatory diseases psoriasis, rheumatoid arthritis, and chronic pulmonary disease. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta, which show varying substrate specificity and expression patterns. p38alpha and p38beta are ubiquitously expressed, p38gamma is predominantly found in skeletal muscle, and p38delta is found in the heart, lung, testis, pancreas, and small intestine. Length = 343

>gnl|CDD|173734 cd07830, STKc_MAK_like, Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

 Score = 78.3 bits (194), Expect = 2e-16
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 31/178 (17%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACI 180
           NLL +     K+ DFG A     +  +T+ + TR YR PE+LL S  YS+  D+W+  CI
Sbjct: 129 NLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSPVDIWALGCI 188

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
             EL T   LF    G +   + D L  +  +LG  P         ++  +     L   
Sbjct: 189 MAELYTLRPLF---PGSS---EIDQLYKICSVLG-TP---------TKQDWPEGYKLASK 232

Query: 241 RRLRF-----WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
              RF       +++++            +  D +  +L + P+KRPTA+Q L HP+ 
Sbjct: 233 LGFRFPQFAPTSLHQLIPNASP-------EAIDLIKDMLRWDPKKRPTASQALQHPYF 283

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertility. It functions as a coactivator of the androgen receptor in prostate cells. MRK, also called Intestinal Cell Kinase (ICK), is expressed ubiquitously, with highest expression in the ovary and uterus. A missense mutation in MRK causes endocrine-cerebro-osteodysplasia (ECO), suggesting that this protein plays an important role in the development of many organs. MAK and MRK may be involved in regulating cell cycle and cell fate. Ime2p is a meiosis-specific kinase that is important during meiotic initiation and during the later stages of meiosis. Mde3 functions downstream of the transcription factor Mei-4 which is essential for meiotic prophase I. Length = 283

>gnl|CDD|173742 cd07845, STKc_CDK10, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

 Score = 75.5 bits (186), Expect = 2e-15
 Identities = 55/187 (29%), Positives = 77/187 (41%), Gaps = 26/187 (13%)

Query: 124 NLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           NLL       K+ DFG A       K  T  + T  YR PE+LLG   Y+T+ D+W+  C
Sbjct: 138 NLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTYTTAIDMWAVGC 197

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  EL     L    S      + + L L+++LLG     I  G            DL  
Sbjct: 198 ILAELLAHKPLLPGKS------EIEQLDLIIQLLGTPNESIWPGFS----------DLPL 241

Query: 240 IRR--LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
           + +  L   P N  L  K+ +       + +FL   L + P+KR TA + L   +    P
Sbjct: 242 VGKFTLPKQPYNN-LKHKFPWLSEAGLRLLNFL---LMYDPKKRATAEEALESSYFKEKP 297

Query: 298 QLREPSM 304
              EP M
Sbjct: 298 LPCEPEM 304

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing increases the transcription of c-RAF and the activation of the p42/p44 MAPK pathway, which leads to antiestrogen resistance. Patients who express low levels of CDK10 relapse early on tamoxifen. Length = 309

>gnl|CDD|143333 cd05118, STKc_CMGC, Catalytic domain of CMGC family Serine/Threonine Kinases

 Score = 73.5 bits (181), Expect = 9e-15
 Identities = 59/198 (29%), Positives = 76/198 (38%), Gaps = 55/198 (27%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL   +   KL DFG A       + +T+ + TR YR PE+LLG K 
Sbjct: 121 HRDLKPE-----NLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKG 175

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
           YST  D+WS  CI  EL +   LF    G +   + D L  +   LG  P          
Sbjct: 176 YSTPVDIWSVGCIFAELLSRRPLF---PGKS---EIDQLFKIFRTLG-TPDP-------- 220

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-------------DFLVPIL 274
                             WP    L   Y F+      M              D L  +L
Sbjct: 221 ----------------EVWPKFTSLARNYKFSFPKKAGMPLPKLFPNASPQALDLLSQML 264

Query: 275 DFVPEKRPTAAQCLSHPW 292
            + P KR TA Q L+HP+
Sbjct: 265 HYDPHKRITAEQALAHPY 282

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Length = 283

>gnl|CDD|143349 cd07844, STKc_PCTAIRE_like, Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 58/174 (33%), Positives = 86/174 (49%), Gaps = 19/174 (10%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +NLL +   + KL DFG A       K ++N++ T  YR P+VLLGS +YSTS D+W   
Sbjct: 132 QNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTSLDMWGVG 191

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI +E+ATG  LF P S D     ED L  +  +LG  P +    G  S   F  +    
Sbjct: 192 CIFYEMATGRPLF-PGSTDV----EDQLHKIFRVLG-TPTEETWPGVSSNPEFKPY---- 241

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                 F+P  + L+      +R      +  +  L + P+KR +AA+ + HP+
Sbjct: 242 ---SFPFYP-PRPLINHAPRLDRIP-HGEELALKFLQYEPKKRISAAEAMKHPY 290

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the membrane-associated cyclin Y. PCTAIRE-like proteins show unusual expression patterns with high levels in post-mitotic tissues, suggesting that they may be involved in regulating post-mitotic cellular events. Length = 291

>gnl|CDD|143371 cd07866, STKc_BUR1, Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

 Score = 73.5 bits (181), Expect = 1e-14
 Identities = 51/191 (26%), Positives = 73/191 (38%), Gaps = 47/191 (24%)

Query: 124 NLLAAVDVQCKLVDFGNA--------CWTHK------QFTNDIQTRQYRCPEVLLGSK-Y 168
           N+L       K+ DFG A                   ++TN + TR YR PE+LLG + Y
Sbjct: 145 NILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVTRWYRPPELLLGERRY 204

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALG 223
           +T+ D+W   C+  E+ T   +    S      D D L L+ +L G       P   +L 
Sbjct: 205 TTAVDIWGIGCVFAEMFTRRPILQGKS------DIDQLHLIFKLCGTPTEETWPGWRSLP 258

Query: 224 GRYSRDFFNRHGDLRHIRRL--RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR 281
           G      F       + R L  RF  +                +  D L  +L   P KR
Sbjct: 259 GCEGVHSF-----TNYPRTLEERFGKL--------------GPEGLDLLSKLLSLDPYKR 299

Query: 282 PTAAQCLSHPW 292
            TA+  L HP+
Sbjct: 300 LTASDALEHPY 310

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic screen as factors involved in general transcription. The BUR1/BUR2 complex phosphorylates the C-terminal domain of RNA polymerase II. In addition, this complex regulates histone modification by phosporylating Rad6 and mediating the association of the Paf1 complex with chromatin. Length = 311

>gnl|CDD|173736 cd07832, STKc_CCRK, Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

 Score = 72.3 bits (178), Expect = 2e-14
 Identities = 54/186 (29%), Positives = 85/186 (45%), Gaps = 30/186 (16%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG----NACWTHKQFTNDIQTRQYRCPEVLLGS- 166
           HR  +P+     NLL + D   K+ DFG     +    + +++ + TR YR PE+L G+ 
Sbjct: 122 HRDLKPA-----NLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGAR 176

Query: 167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY 226
           KY    DLW+  CI  EL  G  LF    G+N   D + LA++   LG    +   G   
Sbjct: 177 KYDPGVDLWAVGCIFAELLNGSPLFP---GEN---DIEQLAIVFRTLGTPNEETWPGLT- 229

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ 286
                     L    ++ F     + +E+  F +   + + D L  +L + P KR +AA+
Sbjct: 230 ---------SLPDYNKITFPESKPIPLEEI-FPDASPEAL-DLLKGLLVYDPSKRLSAAE 278

Query: 287 CLSHPW 292
            L HP+
Sbjct: 279 ALRHPY 284

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of heart failure. Length = 286

>gnl|CDD|173750 cd07857, STKc_MPK1, Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 49/185 (26%), Positives = 76/185 (41%), Gaps = 35/185 (18%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQF-------TNDIQTRQYRCPEVLLG-SKYSTSADL 174
            NLL   D + K+ DFG A    +         T  + TR YR PE++L    Y+ + D+
Sbjct: 134 GNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSFQSYTKAIDV 193

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  CI  EL     +F    G +Y    D L  ++++LG    +               
Sbjct: 194 WSVGCILAELLGRKPVF---KGKDY---VDQLNQILQVLGTPDEET-------------- 233

Query: 235 GDLRHIRRLRFWPMNKVL--VEKYDF--NERDAKDMA-DFLVPILDFVPEKRPTAAQCLS 289
             L  I   +     + L  + K  F     +A  +A D L  +L F P KR +  + L 
Sbjct: 234 --LSRIGSPKAQNYIRSLPNIPKKPFESIFPNANPLALDLLEKLLAFDPTKRISVEEALE 291

Query: 290 HPWMS 294
           HP+++
Sbjct: 292 HPYLA 296

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall construction, morphogenesis, and ion homeostasis. MPK1 is activated in response to cell wall stress including heat stimulation, osmotic shock, UV irradiation, and any agents that interfere with cell wall biogenesis such as chitin antagonists, caffeine, or zymolase. MPK1 is regulated by the MAP2Ks Mkk1/2, which are regulated by the MAP3K Bck1. Pmk1 is also activated by multiple stresses including elevated temperatures, hyper- or hypotonic stress, glucose deprivation, exposure to cell-wall damaging compounds, and oxidative stress. It is regulated by the MAP2K Pek1, which is regulated by the MAP3K Mkh1. Length = 332

>gnl|CDD|173749 cd07855, STKc_ERK5, Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 58/193 (30%), Positives = 90/193 (46%), Gaps = 36/193 (18%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA-CWT-----HKQF-TNDIQTRQYRCPEVLL 164
           HR  +PS     NLL   D + ++ DFG A   +     HK F T  + TR YR PE+LL
Sbjct: 130 HRDLKPS-----NLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLL 184

Query: 165 GS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI--A 221
              +Y+T+ D+WS  CI  E+     LF    G NY      L L++ +LG    ++   
Sbjct: 185 SLPEYTTAIDMWSVGCIFAEMLGRRQLF---PGKNY---VHQLKLILSVLGSPSEEVLNR 238

Query: 222 LGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR 281
           +G    R +     +L   + +   P +K+  +        + +  D L  +L F PE+R
Sbjct: 239 IGSDRVRKYIQ---NLPRKQPV---PWSKIFPKA-------SPEALDLLSQMLQFDPEER 285

Query: 282 PTAAQCLSHPWMS 294
            T  Q L HP+++
Sbjct: 286 ITVEQALQHPFLA 298

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the MAP2K MEK5, which in turn is regulated by the MAP3Ks MEKK2 and MEKK3. Activated ERK5 phosphorylates its targets including myocyte enhancer factor 2 (MEF2), Sap1a, c-Myc, and RSK. It plays a role in EGF-induced cell proliferation during the G1/S phase transition. Studies on knockout mice revealed that ERK5 is essential for cardiovascular development and plays an important role in angiogenesis. It is also critical for neural differentiation and survival. The ERK5 pathway has been implicated in the pathogenesis of many diseases including cancer, cardiac hypertrophy, and atherosclerosis. Length = 334

>gnl|CDD|143364 cd07859, STKc_TDY_MAPK_plant, Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

 Score = 72.5 bits (178), Expect = 3e-14
 Identities = 68/227 (29%), Positives = 102/227 (44%), Gaps = 41/227 (18%)

Query: 123 KNLLAAVDVQCKLVDFG------NACWTHKQFTNDIQTRQYRCPEVLLGS---KYSTSAD 173
           KN+LA  D + K+ DFG      N   T   +T+ + TR YR PE L GS   KY+ + D
Sbjct: 132 KNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPE-LCGSFFSKYTPAID 190

Query: 174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI--ALGGRYSRDFF 231
           +WS  CI  E+ TG  LF    G N       L L+ +LLG    +    +    +R + 
Sbjct: 191 IWSIGCIFAEVLTGKPLF---PGKNVVH---QLDLITDLLGTPSPETISRVRNEKARRY- 243

Query: 232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                L  +R+ +  P ++       F   D   +   L  +L F P+ RPTA + L+ P
Sbjct: 244 -----LSSMRKKQPVPFSQ------KFPNADPLAL-RLLERLLAFDPKDRPTAEEALADP 291

Query: 292 WMSAGPQL-REPSMAAGEPRETEGSIPERKRREQEE------REAME 331
           +     ++ REPS    +P        ER+R  +E+      RE +E
Sbjct: 292 YFKGLAKVEREPS---AQPITKLEFEFERRRLTKEDVRELIYREILE 335

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activation loop, TEY and TDY. Arabidopsis thaliana contains more TEY-type MAPKs than TDY-type, whereas the reverse is true for Oryza sativa. This subfamily represents the TDY subtype and is composed of Group D plant MAPKs including Arabidopsis thaliana MPK18 (AtMPK18), Oryza sativa Blast- and Wound-induced MAPK1 (OsBWMK1), OsWJUMK1 (Wound- and JA-Uninducible MAPK1), Zea mays MPK6, and the Medicago sativa TDY1 gene product. OsBWMK1 enhances resistance to pathogenic infections. It mediates stress-activated defense responses by activating a transcription factor that affects the expression of stress-related genes. AtMPK18 is involved in microtubule-related functions. Length = 338

>gnl|CDD|143385 cd07880, STKc_p38gamma_MAPK12, Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

 Score = 71.9 bits (176), Expect = 4e-14
 Identities = 55/183 (30%), Positives = 83/183 (45%), Gaps = 27/183 (14%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PEV+L    Y+ + D+WS  CI  
Sbjct: 148 NLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMHYTQTVDIWSVGCIMA 207

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E+ TG  LF         K  DHL  +ME++        + G  S++F  +         
Sbjct: 208 EMLTGKPLF---------KGHDHLDQLMEIM-------KVTGTPSKEFVQKLQSEDAKNY 251

Query: 243 LRFWPMNKVLVEKYDFNE--RDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
           ++  P       K DF     +A  +A + L  +L    E R TAA+ L+HP+     + 
Sbjct: 252 VKKLPR----FRKKDFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFE---EF 304

Query: 300 REP 302
            +P
Sbjct: 305 HDP 307

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12, is predominantly expressed in skeletal muscle. Unlike p38alpha and p38beta, p38gamma is insensitive to pyridinylimidazoles. It displays an antagonizing function compared to p38alpha. p38gamma inhibits, while p38alpha stimulates, c-Jun phosphorylation and AP-1 mediated transcription. p38gamma also plays a role in the signaling between Ras and the estrogen receptor and has been implicated to increase cell invasion and breast cancer progression. In Xenopus, p38gamma is critical in the meiotic maturation of oocytes. Length = 343

>gnl|CDD|173748 cd07853, STKc_NLK, Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 59/182 (32%), Positives = 83/182 (45%), Gaps = 22/182 (12%)

Query: 124 NLLAAVDVQCKLVDFGNA-CW---THKQFTNDIQTRQYRCPEVLLGSKYSTSA-DLWSFA 178
           NLL   +   K+ DFG A        K  T ++ T+ YR PE+L+GS++ TSA D+WS  
Sbjct: 133 NLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGSRHYTSAVDIWSVG 192

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  EL    +LF   S          L L+ +LLG  P   A+            G   
Sbjct: 193 CIFAELLGRRILFQAQS------PIQQLDLITDLLG-TPSLEAMRSA-------CEGARA 238

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
           HI  LR       L   Y  + +   +    L  +L F P+KR +AA  L+HP++  G +
Sbjct: 239 HI--LRGPHKPPSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG-R 295

Query: 299 LR 300
           LR
Sbjct: 296 LR 297

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription factors from the TCF/LEF family, inhibiting their ability to activate the transcription of target genes. In prostate cancer cells, NLK is involved in regulating androgen receptor-mediated transcription and its expression is altered during cancer progression. Length = 372

>gnl|CDD|143345 cd07840, STKc_CDK9_like, Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

 Score = 70.3 bits (173), Expect = 1e-13
 Identities = 52/182 (28%), Positives = 76/182 (41%), Gaps = 38/182 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           N+L   D   KL DFG A    K+    +TN + T  YR PE+LLG+ +Y    D+WS  
Sbjct: 130 NILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATRYGPEVDMWSVG 189

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  EL  G  +F    G     + + L  + EL G    +   G               
Sbjct: 190 CILAELFLGKPIF---QGST---ELEQLEKIFELCGSPTDENWPG--------------- 228

Query: 239 HIRRLRFW-------PMNKVLVEKYD-FNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
            + +L ++       P  + L E +    +  A D+ D L   L   P+KR +A Q L H
Sbjct: 229 -VSKLPWFENLKPKKPYKRRLREFFKHLIDPSALDLLDKL---LTLDPKKRISADQALQH 284

Query: 291 PW 292
            +
Sbjct: 285 EY 286

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA polymerase II and participate in regulating mutliple steps of gene expression including transcription elongation and RNA processing. CDK9 and CdkC associate with T-type cyclins while BUR1 associates with the cyclin BUR2. CDK12 is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 interacts with cyclins L1 and L2, and participates in regulating transcription and alternative splicing. Length = 287

>gnl|CDD|173659 cd05122, PKc_STE, Catalytic domain of STE family Protein Kinases

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 47/172 (27%), Positives = 65/172 (37%), Gaps = 47/172 (27%)

Query: 123 KNLLAAVDVQCKLVDFG-NACWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACI 180
            N+L   D + KL+DFG +A  +  +  N +  T  +  PEV+ G  Y   AD+WS    
Sbjct: 127 ANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKADIWSLGIT 186

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
             ELA G     P+S       E      M+ L  +                    LR+ 
Sbjct: 187 AIELAEGKP---PYS-------ELP---PMKALFKIATN---------GPPG----LRN- 219

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                              E+ + +  DFL   L   PEKRPTA Q L HP+
Sbjct: 220 ------------------PEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF 253

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and activated by a MAPKK, which itself is phosphorylated and activated by a MAPKKK. Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAPKKK to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. Other STE family members include p21-activated kinases (PAKs) and class III myosins, among others. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain, which can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, as well as autophosphorylate the C-terminal motor domain. They play an important role in maintaining the structural integrity of photoreceptor cell microvilli. Length = 253

>gnl|CDD|173724 cd06606, STKc_MAPKKK, Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 44/176 (25%), Positives = 64/176 (36%), Gaps = 50/176 (28%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGSKYSTSADLWSF 177
            N+L   D   KL DFG A       T +       T  +  PEV+ G +Y  +AD+WS 
Sbjct: 130 ANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYGRAADIWSL 189

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
            C   E+ATG   +            + +A +         KI   G             
Sbjct: 190 GCTVIEMATGKPPWSEL--------GNPMAALY--------KIGSSG------------- 220

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                           E  +  E  +++  DFL   L   P+KRPTA + L HP++
Sbjct: 221 ----------------EPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL 260

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKKK5) and ASK2 (or MAPKKK6), MEKK1, MEKK2, MEKK3, MEKK4, as well as plant and fungal MAPKKKs. Also included in this subfamily are the cell division control proteins Schizosaccharomyces pombe Cdc7 and Saccharomyces cerevisiae Cdc15. Length = 260

>gnl|CDD|173741 cd07843, STKc_CDC2L1, Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

 Score = 68.0 bits (167), Expect = 7e-13
 Identities = 56/174 (32%), Positives = 74/174 (42%), Gaps = 22/174 (12%)

Query: 124 NLLAAVDVQCKLVDFGNA-CWTH--KQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFAC 179
           NLL       K+ DFG A  +    K +T  + T  YR PE+LLG  +YST+ D+WS  C
Sbjct: 136 NLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYSTAIDMWSVGC 195

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  EL T   LF   S      + D L  + +LLG    KI  G      F      L  
Sbjct: 196 IFAELLTKKPLFPGKS------EIDQLNKIFKLLGTPTEKIWPG------FSE----LPG 239

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPW 292
            ++  F       + K  F      D   D L  +L + P KR +A   L HP+
Sbjct: 240 AKKKTFTKYPYNQLRK-KFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPY 292

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the major isoform, associates with cyclin L and is expressed throughout the cell cycle. It is involved in RNA processing and the regulation of transcription. CDK11(p58) associates with cyclin D3 and is expressed during the G2/M phase of the cell cycle. It plays roles in spindle morphogenesis, centrosome maturation, sister chromatid cohesion, and the completion of mitosis. CDK11(p46) is formed from the larger isoforms by caspases during TNFalpha- and Fas-induced apoptosis. It functions as a downstream effector kinase in apoptotic signaling pathways and interacts with eukaryotic initiation factor 3f (eIF3f), p21-activated kinase (PAK1), and Ran-binding protein (RanBPM). Length = 293

>gnl|CDD|143361 cd07856, STKc_Sty1_Hog1, Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

 Score = 67.5 bits (165), Expect = 1e-12
 Identities = 58/193 (30%), Positives = 86/193 (44%), Gaps = 32/193 (16%)

Query: 108 SQGVKGHR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG 165
           S GV  HR  +PS     N+L   +   K+ DFG A     Q T  + TR YR PE++L 
Sbjct: 126 SAGVV-HRDLKPS-----NILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLT 179

Query: 166 -SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHL---ALMMELLGMMPRKIA 221
             KY    D+WS  CI  E+  G  LF           +DH+   +++ +LLG  P    
Sbjct: 180 WQKYDVEVDIWSAGCIFAEMLEGKPLF---------PGKDHVNQFSIITDLLGTPP---- 226

Query: 222 LGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR 281
                  D  N       +R ++  P  + +     F   D     D L  +L F P+KR
Sbjct: 227 ------DDVINTICSENTLRFVQSLPKREPVPFSEKFKNADP-SAIDLLEKMLVFDPQKR 279

Query: 282 PTAAQCLSHPWMS 294
            +AA+ L+HP+++
Sbjct: 280 ISAAEALAHPYLA 292

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and UV radiation. Sty1 is regulated by the MAP2K Wis1, which is activated by the MAP3Ks Wis4 and Win1, which receive signals of the stress condition from membrane-spanning histidine kinases Mak1-3. Activated Sty1 stabilizes the Atf1 transcription factor and induces transcription of Atf1-dependent genes of the core environmetal stress response (CESR). Hog1 is the key element in the high osmolarity glycerol (HOG) pathway and is activated upon hyperosmotic stress. Activated Hog1 accumulates in the nucleus and regulates stress-induced transcription. The HOG pathway is mediated by two transmembrane osmosensors, Sln1 and Sho1. Length = 328

>gnl|CDD|173753 cd07864, STKc_CDK12, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

 Score = 66.7 bits (163), Expect = 2e-12
 Identities = 56/181 (30%), Positives = 81/181 (44%), Gaps = 35/181 (19%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLG-SKYSTSADLWSFA 178
           N+L     Q KL DFG A   + +    +TN + T  YR PE+LLG  +Y  + D+WS  
Sbjct: 146 NILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPELLLGEERYGPAIDVWSCG 205

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIALGGRYSRDFFNR 233
           CI  EL T   +F        +++   L L+  L G     + P  I L       +FN 
Sbjct: 206 CILGELFTKKPIF------QANQELAQLELISRLCGSPCPAVWPDVIKL------PYFNT 253

Query: 234 HGDLR-HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
               + + RRLR         E++ F    A D+ D +   L   P KR TA + L+ PW
Sbjct: 254 MKPKKQYRRRLR---------EEFSFIPTPALDLLDHM---LTLDPSKRCTAEEALNSPW 301

Query: 293 M 293
           +
Sbjct: 302 L 302

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely expressed in tissues. It interacts with cyclins L1 and L2, and plays roles in regulating transcription and alternative splicing. Length = 302

>gnl|CDD|143381 cd07876, STKc_JNK2, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 64/235 (27%), Positives = 96/235 (40%), Gaps = 57/235 (24%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKY 168
           HR  +PS     N++   D   K++DFG    AC T+   T  + TR YR PEV+LG  Y
Sbjct: 146 HRDLKPS-----NIVVKSDCTLKILDFGLARTAC-TNFMMTPYVVTRYYRAPEVILGMGY 199

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR 228
             + D+WS  CI  EL  G V+F         +  DH+    +++  +       G  S 
Sbjct: 200 KENVDIWSVGCIMGELVKGSVIF---------QGTDHIDQWNKVIEQL-------GTPSA 243

Query: 229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDF------------NERD---AKDMADFLVPI 273
           +F N     R    +R +  N+       F            +ERD        D L  +
Sbjct: 244 EFMN-----RLQPTVRNYVENRPQYPGISFEELFPDWIFPSESERDKLKTSQARDLLSKM 298

Query: 274 LDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEERE 328
           L   P+KR +  + L HP+++             +P E E   P+    + EERE
Sbjct: 299 LVIDPDKRISVDEALRHPYITVWY----------DPAEAEAPPPQIYDAQLEERE 343

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK2 is specifically translocated to the mitochondria during dopaminergic cell death. Specific substrates include the microtubule-associated proteins DCX and Tau, as well as TIF-IA which is involved in ribosomal RNA synthesis regulation. Mice deficient in Jnk2 show protection against arthritis, type 1 diabetes, atherosclerosis, abdominal aortic aneurysm, cardiac cell death, TNF-induced liver damage, and tumor growth, indicating that JNK2 may play roles in the pathogenesis of these diseases. Length = 359

>gnl|CDD|143382 cd07877, STKc_p38alpha_MAPK14, Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

 Score = 67.0 bits (163), Expect = 2e-12
 Identities = 64/224 (28%), Positives = 97/224 (43%), Gaps = 38/224 (16%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYST 170
           HR  +PS     NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ 
Sbjct: 143 HRDLKPS-----NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQ 197

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
           + D+WS  CI  EL TG  LF    G ++    D L L++ L+G    ++          
Sbjct: 198 TVDIWSVGCIMAELLTGRTLF---PGTDHI---DQLKLILRLVGTPGAELL-------KK 244

Query: 231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTAAQC 287
            +      +I+ L   P       K +F      A  +A D L  +L    +KR TAAQ 
Sbjct: 245 ISSESARNYIQSLTQMP-------KMNFANVFIGANPLAVDLLEKMLVLDSDKRITAAQA 297

Query: 288 LSHPWMSA-----GPQLREPSMAAGEPRETEGSIPERKRREQEE 326
           L+H + +         + +P   + E R+    I E K    +E
Sbjct: 298 LAHAYFAQYHDPDDEPVADPYDQSFESRDLL--IDEWKSLTYDE 339

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14, is expressed in most tissues and is the major isoform involved in the immune and inflammatory response. It is the central p38 MAPK involved in myogenesis. It plays a role in regulating cell cycle check-point transition and promoting cell differentiation. p38alpha also regulates cell proliferation and death through crosstalk with the JNK pathway. Its substrates include MAPK activated protein kinase 2 (MK2), MK5, and the transcription factors ATF2 and Mitf. Length = 345

>gnl|CDD|143383 cd07878, STKc_p38beta_MAPK11, Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

 Score = 66.2 bits (161), Expect = 4e-12
 Identities = 61/210 (29%), Positives = 97/210 (46%), Gaps = 35/210 (16%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           N+    D + +++DFG A     + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 148 NVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 207

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI--ALGGRYSRDFFNRHGDLRHI 240
           EL  G  LF    G++Y    D L  +ME++G    ++   +   ++R         ++I
Sbjct: 208 ELLKGKALF---PGNDYI---DQLKRIMEVVGTPSPEVLKKISSEHAR---------KYI 252

Query: 241 RRLRFWPMNKVLVEKYDFNE--RDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
           + L   P       + D  +  R A  +A D L  +L    +KR +A++ L+HP+ S   
Sbjct: 253 QSLPHMP-------QQDLKKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFS--- 302

Query: 298 QLREPSMAAGEPR-ETEGSIPERKRREQEE 326
           Q  +P     EP  E     PE K R  EE
Sbjct: 303 QYHDPE---DEPEAEPYDESPENKERTIEE 329

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is widely expressed in tissues and shows more similarity with p38alpha than with the other isoforms. Both are sensitive to pyridinylimidazoles and share some common substrates such as MAPK activated protein kinase 2 (MK2) and the transcription factors ATF2, c-Fos and, ELK-1. p38beta is involved in regulating the activation of the cyclooxygenase-2 promoter and the expression of TGFbeta-induced alpha-smooth muscle cell actin. Length = 343

>gnl|CDD|173745 cd07848, STKc_CDKL5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 54/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)

Query: 123 KNLLAAVDVQCKLVDFGNAC----WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +NLL + +   KL DFG A      ++  +T  + TR YR PE+LLG+ Y  + D+WS  
Sbjct: 129 ENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKAVDMWSVG 188

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  EL+ G  LF   S      + D L  + ++LG +P +  +   YS   F  HG   
Sbjct: 189 CILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAE-QMKLFYSNPRF--HG--- 236

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
               LRF  +N     +  +    +  + D +  +L   P  R    QCL+HP
Sbjct: 237 ----LRFPAVNHPQSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHP 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes cause a phenotype similar to Rett syndrome (RTT), a progressive neurodevelopmental disorder. These pathogenic mutations are located in the N-terminal portion of the protein within the kinase domain. Length = 287

>gnl|CDD|173735 cd07831, STKc_MOK, Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 48/167 (28%), Positives = 75/167 (44%), Gaps = 32/167 (19%)

Query: 134 KLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVL 190
           KL DFG+    + +  +T  I TR YR PE LL    Y    D+W+  C+ FE+ +   L
Sbjct: 139 KLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGPKMDIWAVGCVFFEILSLFPL 198

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR----DFFNRHGDLRHIRRLRFW 246
           F    G N   + D +A + ++LG    ++    R SR    +F ++ G    +R+L   
Sbjct: 199 F---PGTN---ELDQIAKIHDVLGTPDAEVLKKFRKSRHMNYNFPSKKG--TGLRKLL-- 248

Query: 247 PMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPW 292
                          +A     D L  +L + P++R TA Q L HP+
Sbjct: 249 --------------PNASAEGLDLLKKLLAYDPDERITAKQALRHPY 281

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation. Length = 282

>gnl|CDD|173740 cd07842, STKc_CDK8_like, Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

 Score = 65.4 bits (160), Expect = 5e-12
 Identities = 37/153 (24%), Positives = 66/153 (43%), Gaps = 35/153 (22%)

Query: 157 YRCPEVLLGSKYSTSA-DLWSFACICFELATGDVLF-----DPHSGDNYDKDEDHLALMM 210
           YR PE+LLG+++ T A D+W+  CI  EL T + +F          + + +D+  L  + 
Sbjct: 181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQ--LERIF 238

Query: 211 ELLGM-----------MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFN 259
           E+LG            MP        Y          ++  +   +   +  L +  + +
Sbjct: 239 EVLGTPTEKDWPDIKKMPE-------YDTL-------MKDFKTKTYP--SNSLAKWMEKH 282

Query: 260 ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
           ++      D L  +L++ P KR TA + L HP+
Sbjct: 283 KKPDSQGFDLLRKLLEYDPTKRITAEEALEHPY 315

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDC2L6 also associates with Mediator in complexes lacking CDK8. In VP16-dependent transcriptional activation, CDK8 and CDC2L6 exerts opposing effects by positive and negative regulation, respectively, in similar conditions. Length = 316

>gnl|CDD|173751 cd07860, STKc_CDK2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 53/174 (30%), Positives = 79/174 (45%), Gaps = 23/174 (13%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K YST+ D+WS  
Sbjct: 129 QNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLG 188

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  E+ T   LF    GD+   + D L  +   LG     +  G     D+        
Sbjct: 189 CIFAEMVTRRALF---PGDS---EIDQLFRIFRTLGTPDEVVWPGVTSLPDY---KPSFP 239

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
              R      +KV+       + D +D+   L  +L + P KR +A   L+HP+
Sbjct: 240 KWAR---QDFSKVVPPL----DEDGRDL---LSQMLHYDPNKRISAKAALAHPF 283

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. CDK2, together with CDK4, also regulates embryonic cell proliferation. Despite these important roles, mice deleted for the cdk2 gene are viable and normal except for being sterile. This may be due to compensation provided by CDK1 (also called Cdc2), which can also bind cyclin E and drive the G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 284

>gnl|CDD|143384 cd07879, STKc_p38delta_MAPK13, Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

 Score = 64.2 bits (156), Expect = 2e-11
 Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 33/186 (17%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A     + T  + TR YR PEV+L    Y+ + D+WS  CI  
Sbjct: 147 NLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHYNQTVDIWSVGCIMA 206

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL---RH 239
           E+ TG  LF         K +D+L  + ++L +        G    +F  +  D     +
Sbjct: 207 EMLTGKTLF---------KGKDYLDQLTQILKVT-------GVPGPEFVQKLEDKAAKSY 250

Query: 240 IRRLRFWPMNKVLVEKYDFNE---RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           I+ L  +P       + DF+    + +    D L  +L+   +KR TA + L HP+    
Sbjct: 251 IKSLPKYP-------RKDFSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFD-- 301

Query: 297 PQLREP 302
              R+ 
Sbjct: 302 -SFRDA 306

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13, is found in skeletal muscle, heart, lung, testis, pancreas, and small intestine. It regulates microtubule function by phosphorylating Tau. It activates the c-jun promoter and plays a role in G2 cell cycle arrest. It also controls the degration of c-Myb, which is associated with myeloid leukemia and poor prognosis in colorectal cancer. p38delta is the main isoform involved in regulating the differentiation and apoptosis of keratinocytes. Length = 342

>gnl|CDD|143378 cd07873, STKc_PCTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

 Score = 63.5 bits (154), Expect = 2e-11
 Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 22/174 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +NLL     + KL DFG A       K ++N++ T  YR P++LLGS  YST  D+W   
Sbjct: 133 QNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYSTQIDMWGVG 192

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI +E++TG  LF P S       E+ L  +  +LG  P +    G  S + F  +    
Sbjct: 193 CIFYEMSTGRPLF-PGS-----TVEEQLHFIFRILG-TPTEETWPGILSNEEFKSY---- 241

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
           +  + R   ++           R   D A+ L  +L F   KR +A + + HP+
Sbjct: 242 NYPKYRADCLHN-------HAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPY 288

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may play a role in regulating neurite outgrowth. It can also associate with Trap (Tudor repeat associator with PCTAIRE-2), a physiological partner of PCTAIRE-2; with p11, a small dimeric protein with similarity to S100; and with 14-3-3 proteins, mediators of phosphorylation-dependent interactions in many different proteins. Length = 301

>gnl|CDD|173743 cd07846, STKc_CDKL2_3, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 29/178 (16%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFA 178
           +N+L +     KL DFG A       + +T+ + TR YR PE+L+G +KY  + D+W+  
Sbjct: 129 ENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRAVDIWAVG 188

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFN-RHGD 236
           C+  E+ TG+ LF        D D D L  +++ LG ++PR   +  + +  F   R  +
Sbjct: 189 CLVTEMLTGEPLFPG------DSDIDQLYHIIKCLGNLIPRHQEIFQK-NPLFAGMRLPE 241

Query: 237 LRHIRRL--RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
           ++ I  L  RF  ++ +              + D     L   P+ RP+++Q L H +
Sbjct: 242 VKEIEPLEKRFPKLSGL--------------VLDLAKQCLRIDPDDRPSSSQLLHHEF 285

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKIAMRE (NKIATRE in rat), by translocation is associated with mild mental retardation. It has been reported that CDKL3 is lost in leukemic cells having a chromosome arm 5q deletion, and may contribute to the transformed phenotype. Length = 286

>gnl|CDD|173738 cd07835, STKc_CDK1_like, Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

 Score = 62.3 bits (152), Expect = 5e-11
 Identities = 53/180 (29%), Positives = 79/180 (43%), Gaps = 35/180 (19%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   +   KL DFG A       + +T+++ T  YR PE+LLGS+ YST  D+WS  
Sbjct: 128 QNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQYSTPVDIWSIG 187

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF---FNRHG 235
           CI  E+     LF    GD+   + D L  +   LG     +  G     D+   F +  
Sbjct: 188 CIFAEMVNRRPLF---PGDS---EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPK-- 239

Query: 236 DLRHIRRLRFWP---MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                     W    ++KV+       + D  D+   L  +L + P KR +A   L HP+
Sbjct: 240 ----------WARQDLSKVVPNL----DEDGLDL---LSKMLVYDPAKRISAKAALQHPY 282

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression while the CDK1/cyclin B complex is critical for G2 to M phase transition. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex plays a role in regulating DNA replication. Studies in knockout mice revealed that CDK1 can compensate for the loss of the cdk2 gene as it can also bind cyclin E and drive G1 to S phase transition. CDK3 is regulated by cyclin C and it phosphorylates pRB specifically during the G0/G1 transition. This phosphorylation is required for cells to exit G0 efficiently and enter the G1 phase. Length = 283

>gnl|CDD|143368 cd07863, STKc_CDK4, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

 Score = 61.9 bits (150), Expect = 6e-11
 Identities = 54/175 (30%), Positives = 75/175 (42%), Gaps = 27/175 (15%)

Query: 123 KNLLAAVDVQCKLVDFGNA----CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +N+L     Q KL DFG A    C      T  + T  YR PEVLL S Y+T  D+WS  
Sbjct: 137 ENILVTSGGQVKLADFGLARIYSC--QMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVG 194

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  E+     LF    G++   + D L  + +L+G+ P        + RD     G   
Sbjct: 195 CIFAEMFRRKPLF---CGNS---EADQLGKIFDLIGLPPED-----DWPRDVTLPRGA-- 241

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                 F P     V+     E +    A  L+ +L F P KR +A + L HP+ 
Sbjct: 242 ------FSPRGPRPVQSV-VPEIEESG-AQLLLEMLTFNPHKRISAFRALQHPFF 288

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the nucleus. CDK4 also shows kinase activity towards Smad3, a signal transducer of transforming growth factor (TGF)-beta signaling which modulates transcription and plays a role in cell proliferation and apoptosis. CDK4 is inhibited by the p21 inhibitor and is specifically mutated in human melanoma. Length = 288

>gnl|CDD|143377 cd07872, STKc_PCTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

 Score = 61.9 bits (150), Expect = 8e-11
 Identities = 57/182 (31%), Positives = 86/182 (47%), Gaps = 23/182 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +NLL     + KL DFG A       K ++N++ T  YR P+VLLGS +YST  D+W   
Sbjct: 133 QNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQIDMWGVG 192

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI FE+A+G  LF P S       ED L L+  LLG  P +    G  S D F  +    
Sbjct: 193 CIFFEMASGRPLF-PGS-----TVEDELHLIFRLLG-TPTEETWPGISSNDEFKNY---- 241

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM-SAGP 297
           +  + +  P+        +   R   +  + L   L +  +KR +A + + H +  S G 
Sbjct: 242 NFPKYKPQPL-------INHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLGT 294

Query: 298 QL 299
           ++
Sbjct: 295 RI 296

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play a role in regulating mitochondrial function in neurons. Length = 309

>gnl|CDD|173623 cd00180, PKc, Catalytic domain of Protein Kinases

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 125 LLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACI 180
           LL + + + KL DFG +             + T  Y  PEVLLG   YS  +D+WS   I
Sbjct: 124 LLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSEKSDIWSLGVI 183

Query: 181 CFEL 184
            +EL
Sbjct: 184 LYEL 187

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which one kinase activates a second kinase, which in turn, may act on other kinases; this sequential action transmits a signal from the cell surface to target proteins, which results in cellular responses. The PK family is one of the largest known protein families with more than 100 homologous yeast enzymes and 550 human proteins. A fraction of PK family members are pseudokinases that lack crucial residues for catalytic activity. The mutiplicity of kinases allows for specific regulation according to substrate, tissue distribution, and cellular localization. PKs regulate many cellular processes including proliferation, division, differentiation, motility, survival, metabolism, cell-cycle progression, cytoskeletal rearrangement, immunity, and neuronal functions. Many kinases are implicated in the development of various human diseases including different types of cancer. Length = 215

>gnl|CDD|240233 PTZ00024, PTZ00024, cyclin-dependent protein kinase; Provisional

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 55/200 (27%), Positives = 77/200 (38%), Gaps = 60/200 (30%)

Query: 133 CKLVDFGNA-----------CWTHKQ------FTNDIQTRQYRCPEVLLGS-KYSTSADL 174
           CK+ DFG A               +        T+ + T  YR PE+L+G+ KY  + D+
Sbjct: 158 CKIADFGLARRYGYPPYSDTLSKDETMQRREEMTSKVVTLWYRAPELLMGAEKYHFAVDM 217

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  CI  EL TG  LF    G+N   + D L  + ELLG  P +               
Sbjct: 218 WSVGCIFAELLTGKPLF---PGEN---EIDQLGRIFELLG-TPNEDN------------- 257

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-----------DFLVPILDFVPEKRPT 283
                      WP  K L    +F  R  KD+            D L  +L   P +R +
Sbjct: 258 -----------WPQAKKLPLYTEFTPRKPKDLKTIFPNASDDAIDLLQSLLKLNPLERIS 306

Query: 284 AAQCLSHPWMSAGPQLREPS 303
           A + L H +  + P   +PS
Sbjct: 307 AKEALKHEYFKSDPLPCDPS 326

Length = 335

>gnl|CDD|143342 cd07837, STKc_CdkB_plant, Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 49/164 (29%), Positives = 72/164 (43%), Gaps = 24/164 (14%)

Query: 133 CKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
            K+ D G         K +T++I T  YR PEVLLGS  YST  D+WS  CI  E++   
Sbjct: 150 LKIADLGLGRAFSIPVKSYTHEIVTLWYRAPEVLLGSTHYSTPVDIWSVGCIFAEMSRKQ 209

Query: 189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM 248
            LF    GD+   +   L  + +LLG    ++  G    RD+        H      +P 
Sbjct: 210 PLF---PGDS---ELQQLLHIFKLLGTPTEQVWPGVSKLRDW--------HE-----FPQ 250

Query: 249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
            K         +   + + D L  +L + P KR +A   L+HP+
Sbjct: 251 WKPQDLSRAVPDLSPEGL-DLLQKMLRYDPAKRISAKAALTHPY 293

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developmental pathways, such as stomata and leaf development. CdkB has been shown to associate with both cyclin B, which controls G2/M transition, and cyclin D, which acts as a mediator in linking extracellular signals to the cell cycle. Length = 295

>gnl|CDD|223589 COG0515, SPS1, Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 40/191 (20%), Positives = 59/191 (30%), Gaps = 47/191 (24%)

Query: 125 LLAAVDVQCKLVDFGNACWTHK---------QFTNDIQTRQYRCPEVLLGS---KYSTSA 172
           LL       KL+DFG A                +  + T  Y  PEVLLG      S+S+
Sbjct: 133 LLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVLLGLSLAYASSSS 192

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D+WS     +EL TG   F+                                        
Sbjct: 193 DIWSLGITLYELLTGLPPFEGEKNS---------------------------------SA 219

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
               L+ I  L    +   L       E  +K  +D L  +L   P+ R +++  LSH  
Sbjct: 220 TSQTLKIILELPTPSLASPL--SPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDL 277

Query: 293 MSAGPQLREPS 303
           ++         
Sbjct: 278 LAHLKLKESDL 288

Length = 384

>gnl|CDD|173746 cd07850, STKc_JNK, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 65/234 (27%), Positives = 90/234 (38%), Gaps = 54/234 (23%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGSKYS 169
           HR  +PS     N++   D   K++DFG A      F  T  + TR YR PEV+LG  Y 
Sbjct: 141 HRDLKPS-----NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYK 195

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD 229
            + D+WS  CI  E+  G VLF    G ++    D    ++E LG  P         S +
Sbjct: 196 ENVDIWSVGCIMGEMIRGTVLF---PGTDH---IDQWNKIIEQLG-TP---------SDE 239

Query: 230 FFNRHG-DLRHIRRLR----------FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVP 278
           F +R    +R+    R           +P      +    N+  A    D L  +L   P
Sbjct: 240 FMSRLQPTVRNYVENRPKYAGYSFEELFPDVLFPPDSESHNKLKASQARDLLSKMLVIDP 299

Query: 279 EKRPTAAQCLSHP----WMSAGPQLREPSMAAGEPRETEGSIPERKRREQEERE 328
           EKR +    L HP    W               +P E E   P       +ERE
Sbjct: 300 EKRISVDDALQHPYINVWY--------------DPSEVEAPPPAPYDHSIDERE 339

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3) that are alternatively spliced to produce at least 10 isoforms. JNKs are specifically activated by the MAPK kinases MKK4 and MKK7, which are in turn activated by upstream MAPK kinase kinases as a result of different stimuli including stresses such as ultraviolet (UV) irradiation, hyperosmolarity, heat shock, or cytokines. JNKs activate a large number of different substrates based on specific stimulus, cell type, and cellular condition, and may be implicated in seemingly contradictory functions. Length = 353

>gnl|CDD|173752 cd07861, STKc_CDK1_euk, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 55/179 (30%), Positives = 76/179 (42%), Gaps = 33/179 (18%)

Query: 123 KNLLAAVDVQCKLVDFGNA--------CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSAD 173
           +NLL       KL DFG A         +TH     ++ T  YR PEVLLGS +YST  D
Sbjct: 130 QNLLIDNKGVIKLADFGLARAFGIPVRVYTH-----EVVTLWYRAPEVLLGSPRYSTPVD 184

Query: 174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR 233
           +WS   I  E+AT   LF  H     D + D L  +  +LG     +  G     D+ N 
Sbjct: 185 IWSIGTIFAEMATKKPLF--HG----DSEIDQLFRIFRILGTPTEDVWPGVTSLPDYKNT 238

Query: 234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                       W    +     + +E    D  D L  +L + P KR +A + L+HP+
Sbjct: 239 FPK---------WKKGSLRSAVKNLDE----DGLDLLEKMLIYDPAKRISAKKALNHPY 284

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2 phase entry and progression. CDK1/cyclin A2 has also been implicated as an important regulator of S phase events. The CDK1/cyclin B complex is critical for G2 to M phase transition. It induces mitosis by activating nuclear enzymes that regulate chromatin condensation, nuclear membrane degradation, mitosis-specific microtubule and cytoskeletal reorganization. CDK1 also associates with cyclin E and plays a role in the entry into S phase. CDK1 transcription is stable throughout the cell cycle but is modulated in some pathological conditions. It may play a role in regulating apoptosis under these conditions. In breast cancer cells, HER2 can mediate apoptosis by inactivating CDK1. Activation of CDK1 may contribute to HIV-1 induced apoptosis and neuronal apoptosis in neurodegenerative diseases. Length = 285

>gnl|CDD|143376 cd07871, STKc_PCTAIRE3, Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

 Score = 60.4 bits (146), Expect = 2e-10
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 22/174 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +NLL     + KL DFG A       K ++N++ T  YR P+VLLGS +YST  D+W   
Sbjct: 132 QNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYSTPIDMWGVG 191

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI +E+ATG  +F P S     K+E H  L+  LLG  P +    G  S + F  +    
Sbjct: 192 CILYEMATGRPMF-PGST---VKEELH--LIFRLLG-TPTEETWPGITSNEEFRSYL--- 241

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
              + R  P+        +   R   D  D L  +L +  + R +A   L H +
Sbjct: 242 -FPQYRAQPL-------INHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSY 287

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filaments (PHFs) and stimulate Tau phosphorylation. As AD progresses, phosphorylated Tau aggregates and forms PHFs, which leads to the formation of neurofibrillary tangles (NFTs). In human glioma cells, PCTAIRE-3 induces cell cycle arrest and cell death. Length = 288

>gnl|CDD|143359 cd07854, STKc_MAPK4_6, Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 51/188 (27%), Positives = 75/188 (39%), Gaps = 57/188 (30%)

Query: 130 DVQCKLVDFGNA-----CWTHKQF-TNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           D+  K+ DFG A      ++HK + +  + T+ YR P +LL  + Y+ + D+W+  CI  
Sbjct: 151 DLVLKIGDFGLARIVDPHYSHKGYLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 210

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMM---------------ELLGMMPRKIALGGRYS 227
           E+ TG  LF   +G +       L  M                ELL ++P  +   G   
Sbjct: 211 EMLTGKPLF---AGAH------ELEQMQLILESVPVVREEDRNELLNVIPSFVRNDGGEP 261

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQ 286
           R                  P+  +L              A DFL  IL F P  R TA +
Sbjct: 262 RR-----------------PLRDLLPG--------VNPEALDFLEQILTFNPMDRLTAEE 296

Query: 287 CLSHPWMS 294
            L HP+MS
Sbjct: 297 ALMHPYMS 304

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progression in certain conditions. It may also play a role in glucose-induced insulin secretion. MAPK6 and MAPK4 cooperate to regulate the activity of MAPK-activated protein kinase 5 (MK5), leading to its relocation to the cytoplasm and exclusion from the nucleus. The MAPK6/MK5 and MAPK4/MK5 pathways may play critical roles in embryonic and post-natal development. Length = 342

>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

 Score = 59.7 bits (144), Expect = 5e-10
 Identities = 54/208 (25%), Positives = 88/208 (42%), Gaps = 20/208 (9%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A      F  T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 149 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 208

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 209 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 262

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
              + +P + +     + N+  A    D L  +L   P KR +  + L HP+++      
Sbjct: 263 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVWY--- 318

Query: 301 EPSMAAGEPRETEGSIPERKRREQEERE 328
                  +P E E   P+   ++ +ERE
Sbjct: 319 -------DPAEVEAPPPQIYDKQLDERE 339

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, stroke, sciatic axotomy neural death, and neuronal death due to NGF deprivation, oxidative stress, or exposure to beta-amyloid peptide. This suggests that JNK3 may play roles in the pathogenesis of these diseases. Length = 355

>gnl|CDD|143367 cd07862, STKc_CDK6, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

 Score = 58.1 bits (140), Expect = 2e-09
 Identities = 60/188 (31%), Positives = 82/188 (43%), Gaps = 36/188 (19%)

Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST 170
           HR   R  + +N+L     Q KL DFG A     Q   T+ + T  YR PEVLL S Y+T
Sbjct: 129 HRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYAT 188

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGR 225
             DLWS  CI  E+     LF   S      D D L  +++++G+      PR +AL   
Sbjct: 189 PVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVAL--- 239

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTA 284
                           R  F   +   +EK+     D  ++  D L+  L F P KR +A
Sbjct: 240 ---------------PRQAFHSKSAQPIEKF---VTDIDELGKDLLLKCLTFNPAKRISA 281

Query: 285 AQCLSHPW 292
              LSHP+
Sbjct: 282 YSALSHPY 289

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytoplasm. It is also present in the ruffling edge of spreading fibroblasts and may play a role in cell spreading. It binds to the p21 inhibitor without any effect on its own activity and it is overexpressed in squamous cell carcinomas and neuroblastomas. CDK6 has also been shown to inhibit cell differentiation in many cell types. Length = 290

>gnl|CDD|173660 cd05123, STKc_AGC, Catalytic domain of AGC family Protein Serine/Threonine Kinases

 Score = 56.0 bits (136), Expect = 5e-09
 Identities = 38/171 (22%), Positives = 60/171 (35%), Gaps = 62/171 (36%)

Query: 133 CKLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLLGSKYSTSADLWSFACICFELA 185
            KL DFG A    K+ +++         T +Y  PEVLLG  Y  + D WS   + +E+ 
Sbjct: 132 IKLTDFGLA----KELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKAVDWWSLGVLLYEML 187

Query: 186 TGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF 245
           TG   F       Y +D        E+                                 
Sbjct: 188 TGKPPF-------YAED------RKEI--------------------------------- 201

Query: 246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA--AQCL-SHPWM 293
               K+L +   F E  + +  D +  +L   P KR  +  A+ + +HP+ 
Sbjct: 202 --YEKILKDPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF 250

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the turn motif. Phosphorylation at the A-loop is required of most AGC kinases, which results in a disorder-to-order transition of the A-loop. The ordered conformation results in the access of substrates and ATP to the active site. A subset of AGC kinases with C-terminal extensions containing the HM also requires phosphorylation at this site. Phosphorylation at the HM allows the C-terminal extension to form an ordered structure that packs into the hydrophobic pocket of the catalytic domain, which then reconfigures the kinase into an active bi-lobed state. In addition, growth factor-activated AGC kinases such as PKB, p70S6K, RSK, MSK, PKC, and SGK, require phosphorylation at the turn motif (also called tail or zipper site), located N-terminal to the HM at the C-terminal extension. AGC kinases regulate many cellular processes including division, growth, survival, metabolism, motility, and differentiation. Many are implicated in the development of various human diseases. Length = 250

>gnl|CDD|143344 cd07839, STKc_CDK5, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 51/174 (29%), Positives = 72/174 (41%), Gaps = 22/174 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + KL DFG A       + ++ ++ T  YR P+VL G+K YSTS D+WS  
Sbjct: 128 QNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 187

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI  ELA       P      D D D L  +  LLG    +   G     D+        
Sbjct: 188 CIFAELANAGRPLFP----GNDVD-DQLKRIFRLLGTPTEESWPGVSKLPDY----KPYP 238

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                        +V K +   R      D L  +L   P +R +A + L HP+
Sbjct: 239 MYPATTSLVN---VVPKLNSTGR------DLLQNLLVCNPVQRISAEEALQHPY 283

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also important in synaptic plasticity and learning. CDK5 also participates in protecting against cell death and promoting angiogenesis. Impaired CDK5 activity is implicated in Alzheimer's disease, amyotrophic lateral sclerosis, Parkinson's disease, Huntington's disease and acute neuronal injury. Length = 284

>gnl|CDD|143380 cd07875, STKc_JNK1, Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

 Score = 56.2 bits (135), Expect = 9e-09
 Identities = 55/205 (26%), Positives = 88/205 (42%), Gaps = 17/205 (8%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A      F  T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+  G VLF    G ++    D    ++E LG   P  +       R +          
Sbjct: 216 GEMIKGGVLF---PGTDHI---DQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGY 269

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
              + +P + +     + N+  A    D L  +L     KR +  + L HP+++      
Sbjct: 270 SFEKLFP-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV---WY 325

Query: 301 EPSMAAGEPRETEGSIPERKRREQE 325
           +PS A   P +    IP+++  E+E
Sbjct: 326 DPSEAEAPPPK----IPDKQLDERE 346

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jnk1 or Jnk2) could survive but disruption of both genes resulted in lethality. However, recent studies have shown that JNK1 and JNK2 perform distinct functions through specific binding partners and substrates. JNK1 specifically binds with JAMP (JNK1-associated membrane protein), which regulates the duration of JNK1 activity in response to stimuli. Specific JNK1 substrates include Itch and SG10, which are implicated in Th2 responses and airway inflammation, and microtubule dynamics and axodendritic length, respectively. Mice deficient in Jnk1 are protected against arthritis, obesity, type 2 diabetes, cardiac cell death, and non-alcoholic liver disease, suggesting that JNK1 may play roles in the pathogenesis of these diseases. Length = 364

>gnl|CDD|177649 PLN00009, PLN00009, cyclin-dependent kinase A; Provisional

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 50/174 (28%), Positives = 67/174 (38%), Gaps = 45/174 (25%)

Query: 134 KLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDV 189
           KL DFG A       + FT+++ T  YR PE+LLGS+ YST  D+WS  CI  E+     
Sbjct: 143 KLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRHYSTPVDIWSVGCIFAEMVNQKP 202

Query: 190 LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN 249
           LF        D + D L  +  +LG    +   G     D+                   
Sbjct: 203 LFPG------DSEIDELFKIFRILGTPNEETWPGVTSLPDY------------------- 237

Query: 250 KVLVEKYDFNERDAKDMA-----------DFLVPILDFVPEKRPTAAQCLSHPW 292
                K  F +   KD+A           D L  +L   P KR TA   L H +
Sbjct: 238 -----KSAFPKWPPKDLATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEY 286

Length = 294

>gnl|CDD|173755 cd08215, STKc_Nek, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 60/166 (36%)

Query: 134 KLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLLGSKYSTSADLWSFACICFELAT 186
           KL DFG +    K  ++ +        T  Y  PE+     Y+  +D+WS  C+ +EL T
Sbjct: 143 KLGDFGIS----KVLSSTVDLAKTVVGTPYYLSPELCQNKPYNYKSDIWSLGCVLYELCT 198

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
               F+   G+N          ++EL                                  
Sbjct: 199 LKHPFE---GEN----------LLEL---------------------------------- 211

Query: 247 PMNKVLVEKYD-FNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
              K+L  +Y     + + ++ + +  +L   PE+RP+ AQ L  P
Sbjct: 212 -ALKILKGQYPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSP 256

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Length = 258

>gnl|CDD|132957 cd06626, STKc_MEKK4, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 39/170 (22%), Positives = 57/170 (33%), Gaps = 56/170 (32%)

Query: 134 KLVDFG-------NACWTHKQFTNDIQTRQYRCPEVLLGSKYS---TSADLWSFACICFE 183
           KL DFG       N     ++  +   T  Y  PEV+ G K      +AD+WS  C+  E
Sbjct: 139 KLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGKGKGHGRAADIWSLGCVVLE 198

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           +ATG     P S       ++   +M  +       I                       
Sbjct: 199 MATGKR---PWSE-----LDNEFQIMFHVGAGHKPPIP---------------------- 228

Query: 244 RFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPW 292
                          +         DFL   L+  P+KRPTA++ L HP+
Sbjct: 229 ---------------DSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPF 263

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. JNK and p38 are collectively known as stress-activated MAPKs, as they are activated in response to a variety of environmental stresses and pro-inflammatory cytokines. MEKK4 also plays roles in the re-polarization of the actin cytoskeleton in response to osmotic stress, in the proper closure of the neural tube, in cardiovascular development, and in immune responses. Length = 264

>gnl|CDD|173672 cd05581, STKc_PDK1, Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 35/196 (17%), Positives = 56/196 (28%), Gaps = 75/196 (38%)

Query: 124 NLLAAVDVQCKLVDFGNA--------------CWTHKQFTNDIQTR---------QYRCP 160
           N+L   D+  K+ DFG A                T+     +   R         +Y  P
Sbjct: 132 NILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFASFVGTAEYVSP 191

Query: 161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI 220
           E+L       S+DLW+  CI +++ TG   F          +E                 
Sbjct: 192 ELLNEKPAGKSSDLWALGCIIYQMLTGKPPF-------RGSNEYLT-------------- 230

Query: 221 ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK 280
                                        K+L  +Y F      D  D +  +L   P+ 
Sbjct: 231 ---------------------------FQKILKLEYSFPPNFPPDAKDLIEKLLVLDPQD 263

Query: 281 RPTA----AQCLSHPW 292
           R        +  +HP+
Sbjct: 264 RLGVNEGYDELKAHPF 279

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to autophosphorylate and is constitutively active in mammalian cells. PDK1 is essential for normal embryo development and is important in regulating cell volume. Length = 280

>gnl|CDD|132946 cd06615, PKc_MEK, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

 Score = 52.1 bits (125), Expect = 1e-07
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 8/77 (10%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYST 170
           HR  +PS     N+L     + KL DFG +        N  + TR Y  PE L G+ Y+ 
Sbjct: 123 HRDVKPS-----NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTV 177

Query: 171 SADLWSFACICFELATG 187
            +D+WS      E+A G
Sbjct: 178 QSDIWSLGLSLVEMAIG 194

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the downstream targets, ERK(extracellular signal-regulated kinase) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1/2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. This cascade has also been implicated in synaptic plasticity, migration, morphological determination, and stress response immunological reactions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1/2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 308

>gnl|CDD|173744 cd07847, STKc_CDKL1_4, Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 50/176 (28%), Positives = 76/176 (43%), Gaps = 25/176 (14%)

Query: 124 NLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFAC 179
           N+L     Q KL DFG A         +T+ + TR YR PE+L+G ++Y    D+W+  C
Sbjct: 130 NILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPPVDVWAIGC 189

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDLR 238
           +  EL TG  L+   S      D D L L+ + LG ++PR   +    +  FF   G   
Sbjct: 190 VFAELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQIFS--TNQFF--KG--- 236

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWM 293
               +      + L  K+     +    A  FL   L   P +R +  + L HP+ 
Sbjct: 237 --LSIPEPETREPLESKF----PNISSPALSFLKGCLQMDPTERLSCEELLEHPYF 286

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The function of CDKL4 is unknown. Length = 286

>gnl|CDD|173723 cd06605, PKc_MAPKK, Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 46/186 (24%), Positives = 66/186 (35%), Gaps = 57/186 (30%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGS 166
           HR  +PS     N+L     Q KL DFG       Q  N +      T  Y  PE + G+
Sbjct: 124 HRDVKPS-----NILVNSRGQIKLCDFG----VSGQLVNSLAKTFVGTSSYMAPERIQGN 174

Query: 167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY 226
            YS  +D+WS      ELATG   + P   D  D       L+  ++   P ++   G++
Sbjct: 175 DYSVKSDIWSLGLSLIELATGRFPYPPE-NDPPDGI---FELLQYIVNEPPPRLP-SGKF 229

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ 286
           S                                     D  DF+   L   P +RP+  +
Sbjct: 230 S------------------------------------PDFQDFVNLCLIKDPRERPSYKE 253

Query: 287 CLSHPW 292
            L HP+
Sbjct: 254 LLEHPF 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity PKs that phosphorylate their downstream targets, MAPKs, at specific threonine and tyrosine residues. There are three MAPK subfamilies: extracellular signal-regulated kinase (ERK), c-Jun N-terminal kinase (JNK), and p38. In mammalian cells, there are seven MAPKKs (named MKK1-7) and 20 MAPKKKs. Each MAPK subfamily can be activated by at least two cognate MAPKKs and by multiple MAPKKKs. Length = 265

>gnl|CDD|173663 cd05572, STKc_cGK_PKG, Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

 Score = 50.7 bits (122), Expect = 3e-07
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 17/75 (22%)

Query: 134 KLVDFGNA--------CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELA 185
           KLVDFG A         WT   F     T +Y  PE++L   Y  S D WS   + +EL 
Sbjct: 133 KLVDFGFAKKLKSGQKTWT---F---CGTPEYVAPEIILNKGYDFSVDYWSLGILLYELL 186

Query: 186 TGDVLFDPHSGDNYD 200
           TG     P   D+ D
Sbjct: 187 TGRP---PFGEDDED 198

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowing autophosphorylation and activation of the kinase. cGKI is a soluble protein expressed in all smooth muscles, platelets, cerebellum, and kidney. It is also expressed at lower concentrations in other tissues. cGKII is a membrane-bound protein that is most abundantly expressed in the intestine. It is also present in the brain nuclei, adrenal cortex, kidney, lung, and prostate. cGKI is involved in the regulation of smooth muscle tone, smooth cell proliferation, and platelet activation. cGKII plays a role in the regulation of secretion, such as renin secretion by the kidney and aldosterone secretion by the adrenal. It also regulates bone growth and the circadian rhythm. Length = 262

>gnl|CDD|132954 cd06623, PKc_MAPKK_plant_like, Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 44/190 (23%), Positives = 61/190 (32%), Gaps = 63/190 (33%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLL 164
           HR  +PS     NLL     + K+ DFG +    K   N +        T  Y  PE + 
Sbjct: 123 HRDIKPS-----NLLINSKGEVKIADFGIS----KVLENTLDQCNTFVGTVTYMSPERIQ 173

Query: 165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG 224
           G  YS +AD+WS      E A G   F P              LM               
Sbjct: 174 GESYSYAADIWSLGLTLLECALGKFPFLP------PGQPSFFELM--------------- 212

Query: 225 RYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDA-KDMADFLVPILDFVPEKRPT 283
                        + I                     +   +  DF+   L   P+KRP+
Sbjct: 213 -------------QAI----------CDGPPPSLPAEEFSPEFRDFISACLQKDPKKRPS 249

Query: 284 AAQCLSHPWM 293
           AA+ L HP++
Sbjct: 250 AAELLQHPFI 259

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include MAPKKs from plants, kinetoplastids, alveolates, and mycetozoa. The MAPKK, LmxPK4, from Leishmania mexicana, is important in differentiation and virulence. Dictyostelium discoideum MEK1 is required for proper chemotaxis. MEK1 null mutants display severe defects in cell polarization and directional movement. Plants contain multiple MAPKKs like other eukaryotes. The Arabidopsis genome encodes for 10 MAPKKs while poplar and rice contain 13 MAPKKs each. The functions of these proteins have not been fully elucidated. There is evidence to suggest that MAPK cascades are involved in plant stress responses. In Arabidopsis, MKK3 plays a role in pathogen signaling, MKK2 is involved in cold and salt stress signaling, MKK4/MKK5 participates in innate immunity, and MKK7 regulates basal and systemic acquired resistance. Length = 264

>gnl|CDD|143374 cd07869, STKc_PFTAIRE1, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

 Score = 50.5 bits (120), Expect = 4e-07
 Identities = 58/181 (32%), Positives = 82/181 (45%), Gaps = 23/181 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +NLL +   + KL DFG A         ++N++ T  YR P+VLLGS +YST  D+W   
Sbjct: 132 QNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTCLDMWGVG 191

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN-RHGDL 237
           CI  E+  G   F P   D     +D L  +  +LG  P +    G +S   F      L
Sbjct: 192 CIFVEMIQGVAAF-PGMKD----IQDQLERIFLVLG-TPNEDTWPGVHSLPHFKPERFTL 245

Query: 238 RHIRRLR-FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
              + LR  W  NK+    +      A+D+A  L   L   P+ R +A   LSH + S  
Sbjct: 246 YSPKNLRQAW--NKLSYVNH------AEDLASKL---LQCFPKNRLSAQAALSHEYFSDL 294

Query: 297 P 297
           P
Sbjct: 295 P 295

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 and is inhibited by the p21 cell cycle inhibitor. It has also been shown to interact with the membrane-associated cyclin Y, which recruits the protein to the plasma membrane. Length = 303

>gnl|CDD|173728 cd06614, STKc_PAK, Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

 Score = 50.3 bits (121), Expect = 5e-07
 Identities = 41/178 (23%), Positives = 62/178 (34%), Gaps = 56/178 (31%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+L + D   KL DFG A     Q T +   R        +  PEV+    Y    D+WS
Sbjct: 146 NILLSKDGSVKLADFGFAA----QLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKVDIWS 201

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
              +C E+A G+    P+  +            +  L      I   G            
Sbjct: 202 LGIMCIEMAEGE---PPYLREP----------PLRAL----FLITTKGI---------PP 235

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           L++  +                    + +  DFL   L   PEKRP+A + L HP++ 
Sbjct: 236 LKNPEKW-------------------SPEFKDFLNKCLVKDPEKRPSAEELLQHPFLK 274

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding site for PIX (PAK-interacting exchange factor). Group II PAKs contain a PBD and a catalytic domain, but lack other motifs found in group I PAKs. Since group II PAKs do not contain an obvious AID, they may be regulated differently from group I PAKs. Group I PAKs interact with the SH3 containing proteins Nck, Grb2 and PIX; no such binding has been demonstrated for group II PAKs. Length = 286

>gnl|CDD|173691 cd05600, STKc_Sid2p_Dbf2p, Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
           N L       KL DFG +        + + +  Y  PEVL G  Y  + D WS  C+ +E
Sbjct: 131 NFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVDYWSLGCMLYE 190

Query: 184 LATGDVLFDPHSGDNYD 200
              G   F P SG   +
Sbjct: 191 FLCG---FPPFSGSTPN 204

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis. Dbf2p is important in regulating the mitotic exit network (MEN) and in cytokinesis. Length = 333

>gnl|CDD|173757 cd08217, STKc_Nek2, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 41/165 (24%), Positives = 59/165 (35%), Gaps = 58/165 (35%)

Query: 134 KLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLLGSKYSTSADLWSFACICFELAT 186
           KL DFG A    K   +D         T  Y  PE L    Y   +D+WS  C+ +EL  
Sbjct: 150 KLGDFGLA----KILGHDSSFAKTYVGTPYYMSPEQLNHMSYDEKSDIWSLGCLIYELCA 205

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
              L  P +  N  +    LA  ++  G   R   +  RYS +                 
Sbjct: 206 ---LSPPFTARNQLQ----LASKIK-EGKFRR---IPYRYSSE----------------- 237

Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
            +N+V+           K M       L+  P+KRP+  + L  P
Sbjct: 238 -LNEVI-----------KSM-------LNVDPDKRPSTEELLQLP 263

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exit. NIMA is involved in nuclear membrane fission. Vertebrate Nek2 is a cell cycle-regulated STK, localized in centrosomes and kinetochores, that regulates centrosome splitting at the G2/M phase. It also interacts with other mitotic kinases such as Polo-like kinase 1 and may play a role in spindle checkpoint. An increase in the expression of the human NEK2 gene is strongly associated with the progression of non-Hodgkin lymphoma. Length = 265

>gnl|CDD|132940 cd06609, STKc_MST3_like, Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 41/179 (22%), Positives = 65/179 (36%), Gaps = 63/179 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+L + +   KL DFG +     Q T+ +  R        +  PEV+  S Y   AD+WS
Sbjct: 128 NILLSEEGDVKLADFGVS----GQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKADIWS 183

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA---LGGRYSRDFFNR 233
                 ELA G+    P S    D         M +L ++P+       G ++S+ F   
Sbjct: 184 LGITAIELAKGE---PPLS----DLHP------MRVLFLIPKNNPPSLEGNKFSKPF--- 227

Query: 234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                                             DF+   L+  P++RP+A + L H +
Sbjct: 228 ---------------------------------KDFVSLCLNKDPKERPSAKELLKHKF 253

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN) signaling pathway, and plays a role in cytokinesis. SPS1 plays a role in regulating proteins required for spore wall formation. MST4 plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. STK25 may play a role in the regulation of cell migration and polarization. Length = 274

>gnl|CDD|177557 PHA03209, PHA03209, serine/threonine kinase US3; Provisional

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 39/141 (27%), Positives = 60/141 (42%), Gaps = 22/141 (15%)

Query: 160 PEVLLGSKYSTSADLWSFACICFE-LATGDVLFD--PHSGDNYDKD-EDHLALMMELLGM 215
           PEVL   KY++ AD+WS   + FE LA    +F+  P + + Y K    HL  ++  L +
Sbjct: 225 PEVLARDKYNSKADIWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKV 284

Query: 216 MPRKIAL--GGRYSRDFFNRHGDLR--HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLV 271
            P +     G R  R F       R  + R   F        ++ +           FLV
Sbjct: 285 HPEEFPRDPGSRLVRGFIEYASLERQPYTRYPCF--------QRVNLPIDGE-----FLV 331

Query: 272 -PILDFVPEKRPTAAQCLSHP 291
             +L F    RP+A + L++P
Sbjct: 332 HKMLTFDAAMRPSAEEILNYP 352

Length = 357

>gnl|CDD|143375 cd07870, STKc_PFTAIRE2, Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

 Score = 48.4 bits (115), Expect = 2e-06
 Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 10/76 (13%)

Query: 123 KNLLAAVDVQCKLVDFGNA------CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLW 175
           +NLL +   + KL DFG A        T   +++++ T  YR P+VLLG+  YS++ D+W
Sbjct: 132 QNLLISYLGELKLADFGLARAKSIPSQT---YSSEVVTLWYRPPDVLLGATDYSSALDIW 188

Query: 176 SFACICFELATGDVLF 191
              CI  E+  G   F
Sbjct: 189 GAGCIFIEMLQGQPAF 204

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recessive form of juvenile ALS. The function of PFTAIRE-2 is not yet known. Length = 291

>gnl|CDD|173670 cd05579, STKc_MAST_like, Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 124 NLLAAVDVQCKLVDFG-----------NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSA 172
           N+L   +   KL DFG           N     K+    + T  Y  PEV+LG  +S + 
Sbjct: 123 NILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVILGQGHSKTV 182

Query: 173 DLWSFACICFELATG 187
           D WS  CI +E   G
Sbjct: 183 DWWSLGCILYEFLVG 197

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert relative to other kinases. The fungal kinases in this subfamily harbor other domains in addition to a central catalytic domain, which also contains an insert relative to MAST kinases like MASTL. Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. MAST kinases are cytoskeletal associated kinases of unknown function that are also expressed at neuromuscular junctions and postsynaptic densities. The fungal proteins Rim15 and cek1 are involved in the regulation of meiosis and mitosis, respectively. Length = 265

>gnl|CDD|132943 cd06612, STKc_MST1_2, Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 42/179 (23%), Positives = 62/179 (34%), Gaps = 60/179 (33%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-----IQTRQYRCPEVLLGSKYSTSADLWSFA 178
           N+L   + Q KL DFG +       T       I T  +  PEV+    Y+  AD+WS  
Sbjct: 129 NILLNEEGQAKLADFGVS--GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKADIWSLG 186

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG----GRYSRDFFNRH 234
               E+A G     P+S          +  M  +  M+P K         ++S +F    
Sbjct: 187 ITAIEMAEG---KPPYS---------DIHPMRAIF-MIPNKPPPTLSDPEKWSPEF---- 229

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                                            DF+   L   PE+RP+A Q L HP++
Sbjct: 230 --------------------------------NDFVKKCLVKDPEERPSAIQLLQHPFI 256

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a MAPK kinase) and MEKK1 (a MAPK kinase kinase) by acting as a MAPK kinase kinase kinase (MAPKKKK). Activation of JNK by MST1 leads to caspase activation and apoptosis. MST1 has also been implicated in cell proliferation and differentiation. Krs1 may regulate cell growth arrest and apoptosis in response to cellular stress. Length = 256

>gnl|CDD|173754 cd07865, STKc_CDK9, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 51/183 (27%), Positives = 78/183 (42%), Gaps = 36/183 (19%)

Query: 124 NLLAAVDVQCKLVDFGNACWTH-------KQFTNDIQTRQYRCPEVLLGSK-YSTSADLW 175
           N+L   D   KL DFG A            ++TN + T  YR PE+LLG + Y    D+W
Sbjct: 149 NILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRPPELLLGERDYGPPIDMW 208

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDH-LALMMELLGMMPRKIALG-GRYSRDFFNR 233
              CI  E+ T   +   ++       E H L L+ +L G +  ++  G  +   + F +
Sbjct: 209 GAGCIMAEMWTRSPIMQGNT-------EQHQLTLISQLCGSITPEVWPGVDKL--ELFKK 259

Query: 234 ----HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS 289
                G  R + + R  P  K         +  A D+ D L+ +LD  P KR  A   L+
Sbjct: 260 MELPQGQKRKV-KERLKPYVK---------DPHALDLIDKLL-VLD--PAKRIDADTALN 306

Query: 290 HPW 292
           H +
Sbjct: 307 HDF 309

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multiple steps of gene expression including transcription elongation, mRNA synthesis, processing, export, and translation. It also plays a role in mediating cytokine induced transcription networks such as IL6-induced STAT3 signaling. In addition, the CDK9/cyclin T2a complex promotes muscle differentiation and enhances the function of some myogenic regulatory factors. Length = 310

>gnl|CDD|132961 cd06630, STKc_MEKK1, Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

 Score = 46.8 bits (111), Expect = 5e-06
 Identities = 39/165 (23%), Positives = 58/165 (35%), Gaps = 50/165 (30%)

Query: 134 KLVDFGNACWTHKQFTND-------IQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT 186
           ++ DFG A     + T         + T  +  PEVL G +Y  S D+WS  C+  E+AT
Sbjct: 144 RIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPEVLRGEQYGRSCDVWSVGCVIIEMAT 203

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
               +      N +K  +HLAL+         KIA                         
Sbjct: 204 AKPPW------NAEKHSNHLALIF--------KIASA----------------------- 226

Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                        E  +  + D  +  L+  PE RP + + L HP
Sbjct: 227 ------TTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHP 265

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their respective MAPKKs, MEK1/2 and MKK4/MKK7, respectively. MEKK1 is important in regulating cell survival and apoptosis. MEKK1 also plays a role in cell migration, tissue maintenance and homeostasis, and wound healing. Length = 268

>gnl|CDD|173333 PTZ00036, PTZ00036, glycogen synthase kinase; Provisional

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 9/84 (10%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVL 190
           KL DFG+A      ++  + I +R YR PE++LG+  Y+T  DLWS  CI  E+  G  +
Sbjct: 211 KLCDFGSAKNLLAGQRSVSYICSRFYRAPELMLGATNYTTHIDLWSLGCIIAEMILGYPI 270

Query: 191 FDPHSGDNYDKDEDHLALMMELLG 214
           F   S        D L  ++++LG
Sbjct: 271 FSGQS------SVDQLVRIIQVLG 288

Length = 440

>gnl|CDD|173669 cd05578, STKc_Yank1, Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 133 CKLVDFGNAC-WTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
             + DF  A   T    T     T  Y  PEVL    YS + D WS     +E   G   
Sbjct: 139 VHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVAVDWWSLGVTAYECLRGKRP 198

Query: 191 FDPHS 195
           +  HS
Sbjct: 199 YRGHS 203

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A. Length = 258

>gnl|CDD|132962 cd06631, STKc_YSK4, Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 9/63 (14%)

Query: 134 KLVDFGNA---CW-----THKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACICFEL 184
           KL+DFG A    W     TH      +  T  +  PEV+  S Y   +D+WS  C  FE+
Sbjct: 142 KLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAPEVINESGYGRKSDIWSIGCTVFEM 201

Query: 185 ATG 187
           ATG
Sbjct: 202 ATG 204

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Length = 265

>gnl|CDD|173710 cd05620, STKc_nPKC_delta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 40/142 (28%), Positives = 63/142 (44%), Gaps = 16/142 (11%)

Query: 124 NLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N++   D   K+ DFG      +   + +    T  Y  PE+L G KY+ S D WSF  +
Sbjct: 126 NVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTFSVDWWSFGVL 185

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR------YSRDFFNRH 234
            +E+  G     P  GD  D+DE   ++ ++     PR I    +      + RD   R 
Sbjct: 186 LYEMLIGQ---SPFHGD--DEDELFESIRVD-TPHYPRWITKESKDILEKLFERDPTRRL 239

Query: 235 GDLRHIRRLRFWP-MNKVLVEK 255
           G + +IR   F+  +N   +EK
Sbjct: 240 GVVGNIRGHPFFKTINWTALEK 261

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. It slows down cell proliferation, inducing cell cycle arrest and enhancing cell differentiation. PKC-delta is also involved in the regulation of transcription as well as immune and inflammatory responses. It plays a central role in the genotoxic stress response that leads to DNA damaged-induced apoptosis. Length = 316

>gnl|CDD|173731 cd06627, STKc_Cdc7_like, Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 25/67 (37%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 124 NLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N+L   D   KL DFG A       K   + + T  +  PEV+  S  ST++D+WS  C 
Sbjct: 129 NILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTASDIWSLGCT 188

Query: 181 CFELATG 187
             EL TG
Sbjct: 189 VIELLTG 195

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast Cdc7 is essential for cell division by playing a key role in the initiation of septum formation and cytokinesis. Budding yeast Cdc15 functions to coordinate mitotic exit with cytokinesis. Arabidopsis MAPKKK epsilon is required for pollen development in the plasma membrane. Length = 254

>gnl|CDD|143372 cd07867, STKc_CDC2L6, Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

 Score = 44.7 bits (105), Expect = 4e-05
 Identities = 38/157 (24%), Positives = 64/157 (40%), Gaps = 30/157 (19%)

Query: 152 IQTRQYRCPEVLLGSKYSTSA-DLWSFACICFELATGDVLFDPHSGDNYDKD---EDHLA 207
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F     D    +    D L 
Sbjct: 176 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLD 235

Query: 208 LMMELLGM-----------MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY 256
            +  ++G            MP    L   + R  +     ++++ + +  P +KV +   
Sbjct: 236 RIFSVMGFPADKDWEDIRKMPEYPTLQKDFRRTTYANSSLIKYMEKHKVKPDSKVFL--- 292

Query: 257 DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                        L  +L   P KR T+ Q L  P+ 
Sbjct: 293 ------------LLQKLLTMDPTKRITSEQALQDPYF 317

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as the caspase-processed CDK11(p46). CDK11(p110), CDK11(p58), and CDK11(p46)do not belong to this subfamily. CDC2L6 is an associated protein of Mediator, a multiprotein complex that provides a platform to connect transcriptional and chromatin regulators and cofactors, in order to activate and mediate RNA polymerase II transcription. CDC2L6 is localized mainly in the nucleus amd exerts an opposing effect to CDK8 in VP16-dependent transcriptional activation by being a negative regulator. Length = 317

>gnl|CDD|132951 cd06620, PKc_MAPKK_Byr1_like, Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 34/107 (31%), Positives = 46/107 (42%), Gaps = 18/107 (16%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGS 166
           HR  +PS     N+L     Q KL DFG       +  N I      T  Y  PE + G 
Sbjct: 127 HRDIKPS-----NILVNSRGQIKLCDFG----VSGELINSIADTFVGTSTYMSPERIQGG 177

Query: 167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELL 213
           KY+  +D+WS      ELA G   F   + D  D  +D    +++LL
Sbjct: 178 KYTVKSDVWSLGISIIELALGKFPFAFSNID--DDGQDDPMGILDLL 222

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Byr1 from Schizosaccharomyces pombe, FUZ7 from Ustilago maydis, and related proteins. Byr1 phosphorylates its downstream target, the MAPK Spk1, and is regulated by the MAPKKK Byr2. The Spk1 cascade is pheromone-responsive and is essential for sporulation and sexual differentiation in fission yeast. FUZ7 phosphorylates and activates its target, the MAPK Crk1, which is required in mating and virulence in U. maydis. Length = 284

>gnl|CDD|173770 cd08528, STKc_Nek10, Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)

Query: 121 TRKNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTSADLWS 176
           T  N++   D +  + DFG A    KQ     T+ + T  Y CPE++    Y   AD+W+
Sbjct: 141 TPNNIMLGEDDKVTITDFGLA--KQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWA 198

Query: 177 FACICFELAT 186
           F CI +++ T
Sbjct: 199 FGCILYQMCT 208

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24. Length = 269

>gnl|CDD|173722 cd05633, STKc_GRK3, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 38/117 (32%), Positives = 55/117 (47%), Gaps = 5/117 (4%)

Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G+ Y +SAD +S  C+ 
Sbjct: 127 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDSSADWFSLGCML 186

Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMELL-GMMPR-KIALGGRYSRDFFNRHG 235
           F+L  G   F  H + D ++ D   L + +EL     P  K  L G   RD   R G
Sbjct: 187 FKLLRGHSPFRQHKTKDKHEIDRMTLTVNVELPDSFSPELKSLLEGLLQRDVSKRLG 243

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is widely expressed in many tissues. GRK3-deficient mice show a lack of olfactory receptor desensitization and altered regulation of the M2 muscarinic airway. GRK3 is involved in modulating the cholinergic response of airway smooth muscles. It also plays a role in dopamine receptor regulation. GRK3 promoter polymorphisms may be associated with bipolar disorder. Length = 279

>gnl|CDD|173709 cd05619, STKc_nPKC_theta, Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 28/77 (36%), Positives = 37/77 (48%), Gaps = 9/77 (11%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR------QYRCPEVLLGSKYSTSADLWSF 177
           N+L   D   K+ DFG  C   +    D +T        Y  PE+LLG KY+TS D WSF
Sbjct: 126 NILLDTDGHIKIADFG-MC--KENMLGDAKTCTFCGTPDYIAPEILLGQKYNTSVDWWSF 182

Query: 178 ACICFELATGDVLFDPH 194
             + +E+  G   F  H
Sbjct: 183 GVLLYEMLIGQSPFHGH 199

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. Although T-cells also express other PKC isoforms, PKC-theta is unique in that upon antigen stimulation, it is translocated to the plasma membrane at the immunological synapse, where it mediates signals essential for T-cell activation. It is essential for TCR-induced proliferation, cytokine production, T-cell survival, and the differentiation and effector function of T-helper (Th) cells, particularly Th2 and Th17. PKC-theta is being developed as a therapeutic target for Th2-mediated allergic inflammation and Th17-mediated autoimmune diseases. Length = 316

>gnl|CDD|173668 cd05577, STKc_GRK, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

 Score = 43.6 bits (103), Expect = 7e-05
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 124 NLLAAVDVQCKLVDFGNAC--WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N+L       ++ D G A      K+      T  Y  PEVL G  Y  S D ++  C  
Sbjct: 125 NVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYDFSVDWFALGCTL 184

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMME 211
           +E+  G   F         ++     L M 
Sbjct: 185 YEMIAGRSPFRQRKEKVEKEELKRRTLEMA 214

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of G protein signaling) homology (RH) domain and several motifs. The C-terminus diverges among different groups of GRKs. There are seven types of GRKs, named GRK1 to GRK7. They are subdivided into three main groups: visual (GRK1/7); beta-adrenergic receptor kinases (GRK2/3); and GRK4-like (GRK4/5/6). Expression of GRK2/3/5/6 is widespread while GRK1/4/7 show a limited tissue distribution. The substrate spectrum of the widely expressed GRKs partially overlaps. GRKs play important roles in the cardiovascular, immune, respiratory, skeletal, and nervous systems. Length = 277

>gnl|CDD|173661 cd05570, STKc_PKC, Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 16/89 (17%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR------QYRCPEVLLGSKYSTSADLWSF 177
           N+L   +   K+ DFG  C   +     + T        Y  PE+L    Y  + D W+ 
Sbjct: 126 NVLLDSEGHIKIADFG-MC--KEGILGGVTTSTFCGTPDYIAPEILSYQPYGPAVDWWAL 182

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHL 206
             + +E+  G   F+   GD    DED L
Sbjct: 183 GVLLYEMLAGQSPFE---GD----DEDEL 204

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only require PS. PKCs phosphorylate and modify the activities of a wide variety of cellular proteins including receptors, enzymes, cytoskeletal proteins, transcription factors, and other kinases. They play a central role in signal transduction pathways that regulate cell migration and polarity, proliferation, differentiation, and apoptosis. Also included in this subfamily are the PKC-like proteins, called PKNs. Length = 318

>gnl|CDD|173698 cd05607, STKc_GRK7, Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 3/83 (3%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           +N+L      C+L D G A      K  T    T  Y  PE+L    YS   D ++  C 
Sbjct: 124 ENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYSYPVDWFAMGCS 183

Query: 181 CFELATGDVLFDPHSGDNYDKDE 203
            +E+  G   F  H  +   K+E
Sbjct: 184 IYEMVAGRTPFKDHK-EKVAKEE 205

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual group of GRKs. It is primarily found in the retina and plays a role in the regulation of opsin light receptors. GRK7 is located in retinal cone outer segments and plays an important role in regulating photoresponse of the cones. Length = 277

>gnl|CDD|132950 cd06619, PKc_MKK5, Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

 Score = 43.3 bits (102), Expect = 9e-05
 Identities = 28/81 (34%), Positives = 34/81 (41%), Gaps = 16/81 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGS 166
           HR  +PS     N+L     Q KL DFG       Q  N I      T  Y  PE + G 
Sbjct: 118 HRDVKPS-----NMLVNTRGQVKLCDFG----VSTQLVNSIAKTYVGTNAYMAPERISGE 168

Query: 167 KYSTSADLWSFACICFELATG 187
           +Y   +D+WS      ELA G
Sbjct: 169 QYGIHSDVWSLGISFMELALG 189

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that phosphorylates its downstream target, extracellular signal-regulated kinase 5 (ERK5), on specific threonine and tyrosine residues. MKK5 is activated by MEKK2 and MEKK3 in response to mitogenic and stress stimuli. The ERK5 cascade promotes cell proliferation, differentiation, neuronal survival, and neuroprotection. This cascade plays an essential role in heart development. Mice deficient in either ERK5 or MKK5 die around embryonic day 10 due to cardiovascular defects including underdevelopment of the myocardium. In addition, MKK5 is associated with metastasis and unfavorable prognosis in prostate cancer. Length = 279

>gnl|CDD|173683 cd05592, STKc_nPKC_theta_delta, Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 16/89 (17%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGSKYSTSADLWSF 177
           N+L   D   K+ DFG      +    + +      T  Y  PE+L G KY+ S D WSF
Sbjct: 126 NVLLDKDGHIKIADFGMC---KENMNGEGKASTFCGTPDYIAPEILKGQKYNESVDWWSF 182

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHL 206
             + +E+  G     P  G+    DED L
Sbjct: 183 GVLLYEMLIGQ---SPFHGE----DEDEL 204

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in several aspects of T-cell biology. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. Length = 316

>gnl|CDD|173697 cd05606, STKc_beta_ARK, Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 127 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 186

Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMELLGMMP--RKIALGGRYSRDFFNRHG 235
           F+L  G   F  H + D ++ D   L + +EL        +  L G   RD   R G
Sbjct: 187 FKLLRGHSPFRQHKTKDKHEIDRMTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLG 243

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is composed of GRK2, GRK3, and similar proteins. GRK2 and GRK3 are both widely expressed in many tissues, although GRK2 is present at higher levels. They contain an N-terminal RGS homology (RH) domain, a central catalytic domain, and C-terminal pleckstrin homology (PH) domain that mediates PIP2 and G protein betagamma-subunit translocation to the membrane. GRK2 (also called beta-ARK or beta-ARK1) is important in regulating several cardiac receptor responses. It plays a role in cardiac development and in hypertension. Deletion of GRK2 in mice results in embryonic lethality, caused by hypoplasia of the ventricular myocardium. GRK2 also plays important roles in the liver (as a regulator of portal blood pressure), in immune cells, and in the nervous system. Altered GRK2 expression has been reported in several disorders including major depression, schizophrenia, bipolar disorder, and Parkinsonism. Length = 278

>gnl|CDD|173772 cd08530, STKc_CNK2-like, Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTN-DIQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L   +   K+ D G +    K      I T  Y  PEV  G  YS  +D+WS  C+ +
Sbjct: 133 NILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSYKSDIWSLGCLLY 192

Query: 183 ELATGDVLFDPHS 195
           E+AT    F+  S
Sbjct: 193 EMATFAPPFEARS 205

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, and it regulates cell size, through influencing the size threshold at which cells commit to mitosis. Length = 256

>gnl|CDD|143373 cd07868, STKc_CDK8, Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

 Score = 42.7 bits (100), Expect = 2e-04
 Identities = 38/157 (24%), Positives = 67/157 (42%), Gaps = 30/157 (19%)

Query: 152 IQTRQYRCPEVLLGSKYSTSA-DLWSFACICFELATGDVLF-----DPHSGDNYDKDE-D 204
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F     D  + + Y  D+ D
Sbjct: 176 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLD 235

Query: 205 HLALMM--------ELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY 256
            +  +M        E +  MP    L   + R+ +     ++++ + +  P +K      
Sbjct: 236 RIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF---- 291

Query: 257 DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                        L  +L   P KR T+ Q +  P+ 
Sbjct: 292 -----------HLLQKLLTMDPIKRITSEQAMQDPYF 317

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA polymerase II (RNAP II)-dependent transcription. CDK8 phosphorylates cyclin H, a subunit of the general transcription factor TFIIH, which results in the inhibition of TFIIH-dependent phosphorylation of the C-terminal domain (CTD) of RNAP II, facilitating the inhibition of transcription. It has also been shown to promote transcription by a mechanism that is likely to involve RNAP II phosphorylation. CDK8 also functions as a stimulus-specific positive coregulator of p53 transcriptional responses. Length = 317

>gnl|CDD|132952 cd06621, PKc_MAPKK_Pek1_like, Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 46/190 (24%), Positives = 68/190 (35%), Gaps = 54/190 (28%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG------NACWTHKQFTNDIQTRQYRCPEVLLG 165
           HR  +PS     N+L     Q KL DFG      N+      FT    T  Y  PE + G
Sbjct: 128 HRDIKPS-----NILLTRKGQVKLCDFGVSGELVNS--LAGTFTG---TSFYMAPERIQG 177

Query: 166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR 225
             YS ++D+WS      E+A     F P        + +     +ELL  +         
Sbjct: 178 KPYSITSDVWSLGLTLLEVAQNRFPFPP--------EGEPPLGPIELLSYIVNM------ 223

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA 285
                                  N  L ++     + +++  DF+   L+  P +RPT  
Sbjct: 224 ----------------------PNPELKDEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPW 261

Query: 286 QCLSHPWMSA 295
             L HPW+ A
Sbjct: 262 DMLEHPWIKA 271

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include the MAPKKs Pek1/Skh1 from Schizosaccharomyces pombe and MKK2 from Saccharomyces cerevisiae, and related proteins. Both fission yeast Pek1 and baker's yeast MKK2 are components of the cell integrity MAPK pathway. In fission yeast, Pek1 phosphorylates and activates the MAPK Pmk1/Spm1 and is regulated by the MAPKKK Mkh1. In baker's yeast, the pathway involves the MAPK Slt2, the MAPKKs MKK1 and MKK2, and the MAPKKK Bck1. The cell integrity MAPK cascade is activated by multiple stress conditions, and is essential in cell wall construction, morphogenesis, cytokinesis, and ion homeostasis. Length = 287

>gnl|CDD|132991 cd06917, STKc_NAK1_like, Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 43/180 (23%), Positives = 63/180 (35%), Gaps = 58/180 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLL-GSKYSTSADLW 175
           N+L       KL DFG A         +   R        +  PEV+  G  Y T AD+W
Sbjct: 131 NILVTNTGNVKLCDFGVAA----LLNQNSSKRSTFVGTPYWMAPEVITEGKYYDTKADIW 186

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S     +E+ATG+    P+S      D D    MM +    P ++   G YS        
Sbjct: 187 SLGITIYEMATGN---PPYS------DVDAFRAMMLIPKSKPPRLEDNG-YS-------- 228

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                                       K + +F+   LD  P++R +A + L   W+ A
Sbjct: 229 ----------------------------KLLREFVAACLDEEPKERLSAEELLKSKWIKA 260

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of centrin, and phosphorylates substrates in a Cdc31p-dependent manner. Length = 277

>gnl|CDD|173664 cd05573, STKc_ROCK_NDR_like, Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

 Score = 41.9 bits (99), Expect = 4e-04
 Identities = 25/107 (23%), Positives = 30/107 (28%), Gaps = 35/107 (32%)

Query: 124 NLLAAVDVQCKLVDFGNAC---WTHKQFTNDIQ--------------------------- 153
           N+L   D   KL DFG          +                                 
Sbjct: 131 NILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHKQRRVRANST 190

Query: 154 --TRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDN 198
             T  Y  PEVL G+ Y    D WS   I +E+  G   F P   D 
Sbjct: 191 VGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYG---FPPFYSDT 234

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Proteins in this subfamily are involved in regulating many cellular functions including contraction, motility, division, proliferation, apoptosis, morphogenesis, and cytokinesis. Length = 350

>gnl|CDD|132975 cd06644, STKc_STK10_LOK, Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

 Score = 40.8 bits (95), Expect = 7e-04
 Identities = 43/180 (23%), Positives = 68/180 (37%), Gaps = 53/180 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND---IQTRQYRCPEVLL-----GSKYSTSADLW 175
           N+L  +D   KL DFG +    K        I T  +  PEV++      + Y   AD+W
Sbjct: 140 NVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIW 199

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S      E+A    +  PH   N       + +++++    P  ++   ++S +F     
Sbjct: 200 SLGITLIEMAQ---IEPPHHELN------PMRVLLKIAKSEPPTLSQPSKWSMEF----- 245

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                                           DFL   LD  PE RP+AAQ L HP++S+
Sbjct: 246 -------------------------------RDFLKTALDKHPETRPSAAQLLEHPFVSS 274

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types. Length = 292

>gnl|CDD|173702 cd05611, STKc_Rim15_like, Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

 Score = 40.5 bits (95), Expect = 8e-04
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 5/66 (7%)

Query: 124 NLLAAVDVQCKLVDFG--NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           NLL       KL DFG       +K+F   + T  Y  PE +LG      +D WS  C+ 
Sbjct: 127 NLLIDQTGHLKLTDFGLSRNGLENKKF---VGTPDYLAPETILGVGDDKMSDWWSLGCVI 183

Query: 182 FELATG 187
           FE   G
Sbjct: 184 FEFLFG 189

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a downstream effector of PKA and regulates entry into stationary phase (G0). Thus, it plays a crucial role in regulating yeast proliferation, differentiation, and aging. Cek1 may facilitate progression of mitotic anaphase. Length = 260

>gnl|CDD|132980 cd06649, PKc_MEK2, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

 Score = 40.4 bits (94), Expect = 8e-04
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 134 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 193

Query: 183 ELATG 187
           ELA G
Sbjct: 194 ELAIG 198

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK2, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK2, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. Length = 331

>gnl|CDD|173727 cd06613, STKc_MAP4K3_like, Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

 Score = 40.4 bits (95), Expect = 8e-04
 Identities = 43/179 (24%), Positives = 59/179 (32%), Gaps = 59/179 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVL---LGSKYSTSAD 173
           N+L   D   KL DFG +     Q T  I  R+       +  PEV        Y    D
Sbjct: 131 NILLTEDGDVKLADFGVSA----QLTATIAKRKSFIGTPYWMAPEVAAVERKGGYDGKCD 186

Query: 174 LWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           +W+      ELA     +FD H               M  L ++ +              
Sbjct: 187 IWALGITAIELAELQPPMFDLHP--------------MRALFLISKS------------- 219

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                       F P    L +K    E+ +    DF+   L   P+KRPTA + L HP
Sbjct: 220 -----------NFPP--PKLKDK----EKWSPVFHDFIKKCLTKDPKKRPTATKLLQHP 261

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated either by a small GTP-binding protein or by an adaptor protein, which transmits the signal either directly to a MAP3K to start the triple kinase core cascade or indirectly through a mediator kinase, a MAP4K. MAP4K1, also called haematopoietic progenitor kinase 1 (HPK1), is a hematopoietic-specific STK involved in many cellular signaling cascades including MAPK, antigen receptor, apoptosis, growth factor, and cytokine signaling. It participates in the regulation of T cell receptor signaling and T cell-mediated immune responses. MAP4K2 was referred to as germinal center (GC) kinase because of its preferred location in GC B cells. MAP4K3 plays a role in the nutrient-responsive pathway of mTOR (mammalian target of rapamycin) signaling. It is required in the activation of S6 kinase by amino acids and for the phosphorylation of the mTOR-regulated inhibitor of eukaryotic initiation factor 4E. MAP4K5, also called germinal center kinase-related enzyme (GCKR), has been shown to activate the MAPK c-Jun N-terminal kinase (JNK). Length = 262

>gnl|CDD|173671 cd05580, STKc_PKA, Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 9/83 (10%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ----TRQYRCPEVLLGSKYSTSADLWSFAC 179
           NLL   D   K+ DFG A    K+          T +Y  PE++L   Y  + D W+   
Sbjct: 131 NLLLDSDGYIKITDFGFA----KRVKGRTYTLCGTPEYLAPEIILSKGYGKAVDWWALGI 186

Query: 180 ICFELATGDVLFDPHSGDN-YDK 201
           + +E+  G   F   +    Y+K
Sbjct: 187 LIYEMLAGYPPFFDDNPIQIYEK 209

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubiquitously in cells and interacts with many different downstream targets. It plays a role in the regulation of diverse processes such as growth, development, memory, metabolism, gene expression, immunity, and lipolysis. Length = 290

>gnl|CDD|88519 cd05618, STKc_aPKC_iota, Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 154 TRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFD-PHSGDNYDKD-EDHL-ALMM 210
           T  Y  PE+L G  Y  S D W+   + FE+  G   FD   S DN D++ ED+L  +++
Sbjct: 159 TPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQVIL 218

Query: 211 ELLGMMPRKIAL-GGRYSRDFFNR 233
           E    +PR +++      + F N+
Sbjct: 219 EKQIRIPRSLSVKAASVLKSFLNK 242

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target of tumor-specific gene amplification in many human cancers, and has been identified as a human oncogene. In addition to its role in transformed growth, PKC-iota also promotes invasion, chemoresistance, and tumor cell survival. Expression profiling of PKC-iota is a prognostic marker of poor clinical outcome in several human cancers. PKC-iota also plays a role in establishing cell polarity, and has critical embryonic functions. Length = 329

>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain

 Score = 39.8 bits (94), Expect = 0.001
 Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 13/75 (17%)

Query: 120 ATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC--------PEVLLGSKYSTS 171
           A R N L   ++  K+ DFG +    +   +D   R+           PE L   K+++ 
Sbjct: 129 AAR-NCLVGENLVVKISDFGLS----RDLYDDDYYRKRGGKLPIRWMAPESLKEGKFTSK 183

Query: 172 ADLWSFACICFELAT 186
           +D+WSF  + +E+ T
Sbjct: 184 SDVWSFGVLLWEIFT 198

Phosphotransferases. Tyrosine-specific kinase subfamily. Length = 257

>gnl|CDD|214568 smart00221, STYKc, Protein kinase; unclassified specificity

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 13/75 (17%)

Query: 120 ATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC--------PEVLLGSKYSTS 171
           A R N L   ++  K+ DFG +    +   +D   +            PE L   K+++ 
Sbjct: 130 AAR-NCLVGENLVVKISDFGLS----RDLYDDDYYKVKGGKLPIRWMAPESLKEGKFTSK 184

Query: 172 ADLWSFACICFELAT 186
           +D+WSF  + +E+ T
Sbjct: 185 SDVWSFGVLLWEIFT 199

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase. Length = 258

>gnl|CDD|132960 cd06629, STKc_MAPKKK_Bck1_like, Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 49/177 (27%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-----YRCPEV--LLGSKYSTSADLWS 176
           NLL   D  CK+ DFG +  +   + ND          +  PEV       YS   D+WS
Sbjct: 138 NLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPEVIHSYSQGYSAKVDIWS 197

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             C+  E+  G     P S      DE+ +A M +L                      G+
Sbjct: 198 LGCVVLEMFAGR---RPWS------DEEAIAAMFKL----------------------GN 226

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R        P+   +          +    DFL       P+ RPTA + L HP++
Sbjct: 227 KR-----SAPPIPPDVSMNL------SPVALDFLNACFTINPDNRPTARELLQHPFI 272

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell integrity MAPK pathway, which is activated by stresses and aggressions to the cell wall. The MAPKKK Bck1, MAPKKs Mkk1 and Mkk2, and the MAPK Slt2 make up the cascade that is important in the maintenance of cell wall homeostasis. Fission yeast Mkh1 is involved in MAPK cascades regulating cell morphology, cell wall integrity, salt resistance, and filamentous growth in response to stress. Length = 272

>gnl|CDD|132981 cd06650, PKc_MEK1, Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 134 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 193

Query: 183 ELATG 187
           E+A G
Sbjct: 194 EMAIG 198

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downstream targets, extracellular signal-regulated kinase (ERK) 1 and ERK2, on specific threonine and tyrosine residues. The ERK cascade starts with extracellular signals including growth factors, hormones, and neurotransmitters, which act through receptors and ion channels to initiate intracellular signaling that leads to the activation at the MAPKKK (Raf-1 or MOS) level, which leads to the transmission of signals to MEK1, and finally to ERK1/2. The ERK cascade plays an important role in cell proliferation, differentiation, oncogenic transformation, and cell cycle control, as well as in apoptosis and cell survival under certain conditions. Gain-of-function mutations in genes encoding ERK cascade proteins, including MEK1, cause cardiofaciocutaneous (CFC) syndrome, a condition leading to multiple congenital anomalies and mental retardation in patients. MEK1 also plays a role in cell cycle control. Length = 333

>gnl|CDD|165478 PHA03212, PHA03212, serine/threonine kinase US3; Provisional

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 15/91 (16%)

Query: 137 DFGNACWTHKQFTNDIQTRQY---------RCPEVLLGSKYSTSADLWSFACICFELATG 187
           DFG AC     F  DI   +Y           PE+L    Y  + D+WS   + FE+AT 
Sbjct: 225 DFGAAC-----FPVDINANKYYGWAGTIATNAPELLARDPYGPAVDIWSAGIVLFEMATC 279

Query: 188 -DVLFDPHSGDNYDKDEDHLALMMELLGMMP 217
            D LF+    D     +  + L++   G  P
Sbjct: 280 HDSLFEKDGLDGDCDSDRQIKLIIRRSGTHP 310

Length = 391

>gnl|CDD|173730 cd06624, STKc_ASK, Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 15/65 (23%)

Query: 133 CKLVDFG--------NACWTHKQFTNDIQTRQYRCPEVL-LGSK-YSTSADLWSFACICF 182
            K+ DFG        N C   + FT    T QY  PEV+  G + Y   AD+WS  C   
Sbjct: 148 VKISDFGTSKRLAGINPC--TETFTG---TLQYMAPEVIDKGPRGYGAPADIWSLGCTIV 202

Query: 183 ELATG 187
           E+ATG
Sbjct: 203 EMATG 207

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4/MKK7 and MKK3/MKK6. It plays important roles in cytokine and stress responses, as well as in reactive oxygen species (ROS)-mediated cellular responses. ASK1 is implicated in various diseases mediated by oxidative stress including inschemic heart disease, hypertension, vessel injury, brain ischemia, Fanconi anemia, asthma, and pulmonary edema, among others. ASK2 (also called MAPKKK6) functions only in a heteromeric complex with ASK1, and can activate ASK1 by direct phosphorylation. The function of MAPKKK15 is still unknown. Length = 268

>gnl|CDD|132942 cd06611, STKc_SLK_like, Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 43/179 (24%), Positives = 66/179 (36%), Gaps = 53/179 (29%)

Query: 124 NLLAAVDVQCKLVDFG-NACWTHKQFTND--IQTRQYRCPEVLL-----GSKYSTSADLW 175
           N+L  +D   KL DFG +A         D  I T  +  PEV+       + Y   AD+W
Sbjct: 133 NILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDNPYDYKADIW 192

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S      ELA  +    PH       + + + +++++L   P  +    ++S  F     
Sbjct: 193 SLGITLIELAQME---PPHH------ELNPMRVLLKILKSEPPTLDQPSKWSSSF----- 238

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                                           DFL   L   P+ RPTAA+ L HP++S
Sbjct: 239 -------------------------------NDFLKSCLVKDPDDRPTAAELLKHPFVS 266

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. SmSLK is capable of activating the MAPK Jun N-terminal kinase (JNK) pathway in human embryonic kidney (HEK) cells as well as in Xenopus oocytes. It may participate in regulating MAPK cascades during host-parasite interactions. Length = 280

>gnl|CDD|132971 cd06640, STKc_MST4, Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

 Score = 38.9 bits (90), Expect = 0.002
 Identities = 33/112 (29%), Positives = 50/112 (44%), Gaps = 18/112 (16%)

Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTND--IQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N+L +     KL DFG A   T  Q   +  + T  +  PEV+  S Y + AD+WS    
Sbjct: 131 NVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKADIWSLGIT 190

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGGRYSRDF 230
             ELA G    +P + D +          M +L ++P+     L G +S+ F
Sbjct: 191 AIELAKG----EPPNSDMHP---------MRVLFLIPKNNPPTLTGEFSKPF 229

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by interacting with the Golgi matrix protein GM130 and may play a role in cell migration. Length = 277

>gnl|CDD|132963 cd06632, STKc_MEKK1_plant, Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 11/71 (15%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYR------CPEVLLGS-KYSTSADLWS 176
           N+L   +   KL DFG A    KQ       + ++       PEV+     Y  +AD+WS
Sbjct: 132 NILVDTNGVVKLADFGMA----KQVVEFSFAKSFKGSPYWMAPEVIAQQGGYGLAADIWS 187

Query: 177 FACICFELATG 187
             C   E+ATG
Sbjct: 188 LGCTVLEMATG 198

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidopsis thaliana MEKK1 activates MPK4, a MAPK that regulates systemic acquired resistance. MEKK1 also participates in the regulation of temperature-sensitive and tissue-specific cell death. Length = 258

>gnl|CDD|173726 cd06610, STKc_OSR1_SPAK, Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 124 NLLAAVDVQCKLVDFG-------NACWTHKQFTNDIQTRQYRCPEVL-LGSKYSTSADLW 175
           N+L   D   K+ DFG           T K     + T  +  PEV+     Y   AD+W
Sbjct: 132 NILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQVHGYDFKADIW 191

Query: 176 SFACICFELATG 187
           SF     ELATG
Sbjct: 192 SFGITAIELATG 203

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1 and SPAK contain a conserved C-terminal (CCT) domain, which recognizes a unique motif ([RK]FX[VI]) present in their activating kinases (WNK1/WNK4) and their substrates. Length = 267

>gnl|CDD|173673 cd05582, STKc_RSK_N, N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

 Score = 38.6 bits (90), Expect = 0.003
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)

Query: 123 KNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +N+L   +   KL DFG    +    K+  +   T +Y  PEV+    ++ SAD WSF  
Sbjct: 127 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 186

Query: 180 ICFELATGDVLF 191
           + FE+ TG + F
Sbjct: 187 LMFEMLTGSLPF 198

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylates all known RSK substrates. RSKs act as downstream effectors of mitogen-activated protein kinase (MAPK) and play key roles in mitogen-activated cell growth, differentiation, and survival. Mammals possess four RSK isoforms (RSK1-4) from distinct genes. RSK proteins are also referred to as MAP kinase-activated protein kinases (MAPKAPKs), p90-RSKs, or p90S6Ks. Length = 318

>gnl|CDD|173625 cd05032, PTKc_InsR_like, Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 21/77 (27%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYR------------CPEVLLGSKYS 169
           +N + A D+  K+ DFG         T DI +T  YR             PE L    ++
Sbjct: 148 RNCMVAEDLTVKIGDFG--------MTRDIYETDYYRKGGKGLLPVRWMAPESLKDGVFT 199

Query: 170 TSADLWSFACICFELAT 186
           T +D+WSF  + +E+AT
Sbjct: 200 TKSDVWSFGVVLWEMAT 216

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR and IGF-1R, which share 84% sequence identity in their kinase domains, display physiologically distinct yet overlapping functions in cell growth, differentiation, and metabolism. InsR activation leads primarily to metabolic effects while IGF-1R activation stimulates mitogenic pathways. In cells expressing both receptors, InsR/IGF-1R hybrids are found together with classical receptors. Both receptors can interact with common adaptor molecules such as IRS-1 and IRS-2. Length = 277

>gnl|CDD|133214 cd05083, PTKc_Chk, Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

 Score = 38.0 bits (88), Expect = 0.004
 Identities = 18/62 (29%), Positives = 32/62 (51%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           +N+L + D   K+ DFG A        N     ++  PE L   K+S+ +D+WS+  + +
Sbjct: 129 RNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSDVWSYGVLLW 188

Query: 183 EL 184
           E+
Sbjct: 189 EV 190

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src kinases using a noncatalytic mechanism by simply binding to them. As a negative regulator of Src kinases, Chk may play important roles in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. Chk is expressed in brain and hematopoietic cells. Studies in mice reveal that Chk is not functionally redundant with Csk and that it plays an important role as a regulator of immune responses. Chk also plays a role in neural differentiation in a manner independent of Src by enhancing Mapk activation via Ras-mediated signaling. Length = 254

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	358
KOG0615	475	consensus Serine/threonine protein kinase Chk2 and	100.0
KOG0600	560	consensus Cdc2-related protein kinase [Cell cycle	100.0
KOG0581	364	consensus Mitogen-activated protein kinase kinase	100.0
KOG0660	359	consensus Mitogen-activated protein kinase [Signal	100.0
KOG0575	592	consensus Polo-like serine/threonine protein kinas	100.0
KOG0663	419	consensus Protein kinase PITSLRE and related kinas	100.0
KOG0661	538	consensus MAPK related serine/threonine protein ki	100.0
KOG0588	786	consensus Serine/threonine protein kinase [Cell cy	100.0
KOG0578	550	consensus p21-activated serine/threonine protein k	100.0
KOG0592	604	consensus 3-phosphoinositide-dependent protein kin	100.0
KOG0659	318	consensus Cdk activating kinase (CAK)/RNA polymera	100.0
KOG0598	357	consensus Ribosomal protein S6 kinase and related	100.0
KOG0593	396	consensus Predicted protein kinase KKIAMRE [Genera	100.0
KOG0583	370	consensus Serine/threonine protein kinase [Signal	100.0
KOG0604	400	consensus MAP kinase-activated protein kinase 2 [S	100.0
KOG0616	355	consensus cAMP-dependent protein kinase catalytic	100.0
KOG0033	355	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0605	550	consensus NDR and related serine/threonine kinases	100.0
KOG0595	429	consensus Serine/threonine-protein kinase involved	100.0
KOG0694	694	consensus Serine/threonine protein kinase [Signal	100.0
KOG0667	586	consensus Dual-specificity tyrosine-phosphorylatio	100.0
KOG0599	411	consensus Phosphorylase kinase gamma subunit [Carb	100.0
KOG1290	590	consensus Serine/threonine protein kinase [Signal	100.0
KOG0594	323	consensus Protein kinase PCTAIRE and related kinas	100.0
KOG0198	313	consensus MEKK and related serine/threonine protei	100.0
KOG0582	516	consensus Ste20-like serine/threonine protein kina	100.0
KOG0658	364	consensus Glycogen synthase kinase-3 [Carbohydrate	100.0
PTZ00284	467	protein kinase; Provisional	100.0
KOG0201	467	consensus Serine/threonine protein kinase [Signal	100.0
KOG0597	808	consensus Serine-threonine protein kinase FUSED [G	100.0
KOG0611	668	consensus Predicted serine/threonine protein kinas	100.0
cd07871	288	STKc_PCTAIRE3 Catalytic domain of the Serine/Threo	100.0
KOG0032	382	consensus Ca2+/calmodulin-dependent protein kinase	100.0
cd07848	287	STKc_CDKL5 Catalytic domain of the Serine/Threonin	100.0
cd05571	323	STKc_PKB Catalytic domain of the Protein Serine/Th	100.0
cd05612	291	STKc_PRKX_like Catalytic domain of PRKX-like Prote	100.0
KOG0585	576	consensus Ca2+/calmodulin-dependent protein kinase	100.0
KOG0574	502	consensus STE20-like serine/threonine kinase MST [	100.0
cd07869	303	STKc_PFTAIRE1 Catalytic domain of the Serine/Threo	100.0
cd07875	364	STKc_JNK1 Catalytic domain of the Serine/Threonine	100.0
cd07859	338	STKc_TDY_MAPK_plant Catalytic domain of the Serine	100.0
PTZ00263	329	protein kinase A catalytic subunit; Provisional	100.0
KOG0192	362	consensus Tyrosine kinase specific for activated (	100.0
cd05585	312	STKc_YPK1_like Catalytic domain of Yeast Protein K	100.0
KOG0671	415	consensus LAMMER dual specificity kinases [Signal	100.0
cd07876	359	STKc_JNK2 Catalytic domain of the Serine/Threonine	100.0
PTZ00426	340	cAMP-dependent protein kinase catalytic subunit; P	100.0
cd05593	328	STKc_PKB_gamma Catalytic domain of the Protein Ser	100.0
KOG0591	375	consensus NIMA (never in mitosis)-related G2-speci	100.0
cd07874	355	STKc_JNK3 Catalytic domain of the Serine/Threonine	100.0
cd05590	320	STKc_nPKC_eta Catalytic domain of the Protein Seri	100.0
cd05600	333	STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p-	100.0
KOG0610	459	consensus Putative serine/threonine protein kinase	100.0
cd05594	325	STKc_PKB_alpha Catalytic domain of the Protein Ser	100.0
KOG4717	864	consensus Serine/threonine protein kinase [Signal	100.0
cd05587	324	STKc_cPKC Catalytic domain of the Protein Serine/T	100.0
cd05591	321	STKc_nPKC_epsilon Catalytic domain of the Protein	100.0
KOG0669	376	consensus Cyclin T-dependent kinase CDK9 [Cell cyc	100.0
PHA03212	391	serine/threonine kinase US3; Provisional	100.0
cd05595	323	STKc_PKB_beta Catalytic domain of the Protein Seri	100.0
cd05628	363	STKc_NDR1 Catalytic domain of the Protein Serine/T	100.0
cd05616	323	STKc_cPKC_beta Catalytic domain of the Protein Ser	100.0
cd07853	372	STKc_NLK Catalytic domain of the Serine/Threonine	100.0
cd07862	290	STKc_CDK6 Catalytic domain of the Serine/Threonine	100.0
cd05620	316	STKc_nPKC_delta Catalytic domain of the Protein Se	100.0
KOG0690	516	consensus Serine/threonine protein kinase [Signal	100.0
cd05592	316	STKc_nPKC_theta_delta Catalytic domain of the Prot	100.0
cd05631	285	STKc_GRK4 Catalytic domain of the Protein Serine/T	100.0
cd05588	329	STKc_aPKC Catalytic domain of the Protein Serine/T	100.0
PTZ00036	440	glycogen synthase kinase; Provisional	100.0
PLN00034	353	mitogen-activated protein kinase kinase; Provision	100.0
KOG0665	369	consensus Jun-N-terminal kinase (JNK) [Signal tran	100.0
cd05617	327	STKc_aPKC_zeta Catalytic domain of the Protein Ser	100.0
cd07872	309	STKc_PCTAIRE2 Catalytic domain of the Serine/Threo	100.0
cd06649	331	PKc_MEK2 Catalytic domain of the dual-specificity	100.0
cd07878	343	STKc_p38beta_MAPK11 Catalytic domain of the Serine	100.0
cd05618	329	STKc_aPKC_iota Catalytic domain of the Protein Ser	100.0
cd05573	350	STKc_ROCK_NDR_like Catalytic domain of ROCK- and N	100.0
cd05615	323	STKc_cPKC_alpha Catalytic domain of the Protein Se	100.0
cd05584	323	STKc_p70S6K Catalytic domain of the Protein Serine	100.0
cd05614	332	STKc_MSK2_N N-terminal catalytic domain of the Pro	100.0
cd07868	317	STKc_CDK8 Catalytic domain of the Serine/Threonine	100.0
cd05625	382	STKc_LATS1 Catalytic domain of the Protein Serine/	100.0
cd05570	318	STKc_PKC Catalytic domain of the Protein Serine/Th	100.0
cd05599	364	STKc_NDR_like Catalytic domain of Nuclear Dbf2-Rel	100.0
cd05629	377	STKc_NDR_like_fungal Catalytic domain of Fungal Nu	100.0
cd05589	324	STKc_PKN Catalytic domain of the Protein Serine/Th	100.0
cd05619	316	STKc_nPKC_theta Catalytic domain of the Protein Se	100.0
cd05575	323	STKc_SGK Catalytic domain of the Protein Serine/Th	100.0
cd05608	280	STKc_GRK1 Catalytic domain of the Protein Serine/T	100.0
cd05626	381	STKc_LATS2 Catalytic domain of the Protein Serine/	100.0
KOG0197	468	consensus Tyrosine kinases [Signal transduction me	100.0
cd07863	288	STKc_CDK4 Catalytic domain of the Serine/Threonine	100.0
KOG0986	591	consensus G protein-coupled receptor kinase [Signa	100.0
KOG0586	596	consensus Serine/threonine protein kinase [General	100.0
cd05582	318	STKc_RSK_N N-terminal catalytic domain of the Prot	100.0
cd05598	376	STKc_LATS Catalytic domain of the Protein Serine/T	100.0
KOG0589	426	consensus Serine/threonine protein kinase [General	100.0
cd05601	330	STKc_CRIK Catalytic domain of the Protein Serine/T	100.0
cd05604	325	STKc_SGK3 Catalytic domain of the Protein Serine/T	100.0
cd05627	360	STKc_NDR2 Catalytic domain of the Protein Serine/T	100.0
cd05586	330	STKc_Sck1_like Catalytic domain of Suppressor of l	100.0
cd05596	370	STKc_ROCK Catalytic domain of the Protein Serine/T	100.0
cd05621	370	STKc_ROCK2 Catalytic domain of the Protein Serine/	100.0
cd06650	333	PKc_MEK1 Catalytic domain of the dual-specificity	100.0
cd05602	325	STKc_SGK1 Catalytic domain of the Protein Serine/T	100.0
cd05603	321	STKc_SGK2 Catalytic domain of the Protein Serine/T	100.0
KOG0196	996	consensus Tyrosine kinase, EPH (ephrin) receptor f	99.98
KOG0666	438	consensus Cyclin C-dependent kinase CDK8 [Transcri	99.98
KOG0580	281	consensus Serine/threonine protein kinase [Cell cy	99.98
cd07867	317	STKc_CDC2L6 Catalytic domain of Serine/Threonine K	99.98
cd07850	353	STKc_JNK Catalytic domain of the Serine/Threonine	99.98
KOG0579	1187	consensus Ste20-like serine/threonine protein kina	99.98
cd07873	301	STKc_PCTAIRE1 Catalytic domain of the Serine/Threo	99.98
cd05605	285	STKc_GRK4_like Catalytic domain of G protein-coupl	99.98
PHA02988	283	hypothetical protein; Provisional	99.98
PHA03207	392	serine/threonine kinase US3; Provisional	99.98
PTZ00283	496	serine/threonine protein kinase; Provisional	99.98
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.98
cd07839	284	STKc_CDK5 Catalytic domain of the Serine/Threonine	99.97
cd05622	371	STKc_ROCK1 Catalytic domain of the Protein Serine/	99.97
KOG1989	738	consensus ARK protein kinase family [Signal transd	99.97
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.97
cd07861	285	STKc_CDK1_euk Catalytic domain of the Serine/Threo	99.97
cd07841	298	STKc_CDK7 Catalytic domain of the Serine/Threonine	99.97
cd05102	338	PTKc_VEGFR3 Catalytic domain of the Protein Tyrosi	99.97
cd07845	309	STKc_CDK10 Catalytic domain of the Serine/Threonin	99.97
KOG4721	904	consensus Serine/threonine protein kinase, contain	99.97
PTZ00267	478	NIMA-related protein kinase; Provisional	99.97
cd05633	279	STKc_GRK3 Catalytic domain of the Protein Serine/T	99.97
cd07833	288	STKc_CDKL Catalytic domain of Cyclin-Dependent pro	99.97
cd05597	331	STKc_DMPK_like Catalytic domain of Myotonic Dystro	99.97
cd06615	308	PKc_MEK Catalytic domain of the dual-specificity P	99.97
KOG4279	1226	consensus Serine/threonine protein kinase [Signal	99.97
cd07831	282	STKc_MOK Catalytic domain of the Serine/Threonine	99.97
cd05630	285	STKc_GRK6 Catalytic domain of the Protein Serine/T	99.97
cd08223	257	STKc_Nek4 Catalytic domain of the Protein Serine/T	99.97
cd06625	263	STKc_MEKK3_like Catalytic domain of MAP/ERK kinase	99.97
cd07832	286	STKc_CCRK Catalytic domain of the Serine/Threonine	99.97
KOG0596	677	consensus Dual specificity; serine/threonine and t	99.97
cd07834	330	STKc_MAPK Catalytic domain of the Serine/Threonine	99.97
cd06631	265	STKc_YSK4 Catalytic domain of the Protein Serine/T	99.97
cd05580	290	STKc_PKA Catalytic domain of the Protein Serine/Th	99.97
KOG0607	463	consensus MAP kinase-interacting kinase and relate	99.97
cd06637	272	STKc_TNIK Catalytic domain of the Protein Serine/T	99.97
cd05606	278	STKc_beta_ARK Catalytic domain of the Protein Seri	99.97
KOG0668	338	consensus Casein kinase II, alpha subunit [Signal	99.97
cd05623	332	STKc_MRCK_alpha Catalytic domain of the Protein Se	99.97
cd05607	277	STKc_GRK7 Catalytic domain of the Protein Serine/T	99.97
cd06609	274	STKc_MST3_like Catalytic domain of Mammalian Ste20	99.97
cd08227	327	PK_STRAD_alpha Pseudokinase domain of STE20-relate	99.97
cd07860	284	STKc_CDK2_3 Catalytic domain of the Serine/Threoni	99.97
cd06622	286	PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS	99.97
PHA03209	357	serine/threonine kinase US3; Provisional	99.97
cd05624	331	STKc_MRCK_beta Catalytic domain of the Protein Ser	99.97
cd05572	262	STKc_cGK_PKG Catalytic domain of the Protein Serin	99.97
cd06619	279	PKc_MKK5 Catalytic domain of the dual-specificity	99.97
cd07851	343	STKc_p38 Catalytic domain of the Serine/Threonine	99.97
cd06605	265	PKc_MAPKK Catalytic domain of the dual-specificity	99.97
cd07837	295	STKc_CdkB_plant Catalytic domain of the Serine/Thr	99.97
KOG0577	948	consensus Serine/threonine protein kinase [Signal	99.97
cd06651	266	STKc_MEKK3 Catalytic domain of the Protein Serine/	99.97
cd07847	286	STKc_CDKL1_4 Catalytic domain of the Serine/Threon	99.97
cd07849	336	STKc_ERK1_2_like Catalytic domain of Extracellular	99.97
PHA03211	461	serine/threonine kinase US3; Provisional	99.97
cd07880	343	STKc_p38gamma_MAPK12 Catalytic domain of the Serin	99.97
cd07858	337	STKc_TEY_MAPK_plant Catalytic domain of the Serine	99.97
cd07870	291	STKc_PFTAIRE2 Catalytic domain of the Serine/Threo	99.97
PHA03390	267	pk1 serine/threonine-protein kinase 1; Provisional	99.97
cd07855	334	STKc_ERK5 Catalytic domain of the Serine/Threonine	99.97
cd07865	310	STKc_CDK9 Catalytic domain of the Serine/Threonine	99.97
cd05611	260	STKc_Rim15_like Catalytic domain of fungal Rim15-l	99.97
cd07843	293	STKc_CDC2L1 Catalytic domain of the Serine/Threoni	99.97
cd05574	316	STKc_phototropin_like Catalytic domain of Phototro	99.97
cd07846	286	STKc_CDKL2_3 Catalytic domain of the Serine/Threon	99.97
cd07836	284	STKc_Pho85 Catalytic domain of the Serine/Threonin	99.97
cd06612	256	STKc_MST1_2 Catalytic domain of the Protein Serine	99.97
cd05632	285	STKc_GRK5 Catalytic domain of the Protein Serine/T	99.97
cd06628	267	STKc_MAPKKK_Byr2_like Catalytic domain of fungal B	99.97
PF00069	260	Pkinase: Protein kinase domain Protein kinase; unc	99.97
cd08216	314	PK_STRAD Pseudokinase domain of STE20-related kina	99.97
cd06636	282	STKc_MAP4K4_6 Catalytic domain of the Protein Seri	99.97
KOG1026	774	consensus Nerve growth factor receptor TRKA and re	99.97
KOG0662	292	consensus Cyclin-dependent kinase CDK5 [Intracellu	99.97
KOG4645	1509	consensus MAPKKK (MAP kinase kinase kinase) SSK2 a	99.97
cd07844	291	STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like	99.97
cd07835	283	STKc_CDK1_like Catalytic domain of Cyclin-Dependen	99.97
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	99.97
KOG0587	953	consensus Traf2- and Nck-interacting kinase and re	99.97
cd06610	267	STKc_OSR1_SPAK Catalytic domain of the Protein Ser	99.97
cd05576	237	STKc_RPK118_like Catalytic domain of the Protein S	99.97
cd06658	292	STKc_PAK5 Catalytic domain of the Protein Serine/T	99.97
PTZ00266	1021	NIMA-related protein kinase; Provisional	99.97
cd08529	256	STKc_FA2-like Catalytic domain of the Protein Seri	99.97
cd06655	296	STKc_PAK2 Catalytic domain of the Protein Serine/T	99.97
cd06654	296	STKc_PAK1 Catalytic domain of the Protein Serine/T	99.97
PTZ00024	335	cyclin-dependent protein kinase; Provisional	99.97
cd06621	287	PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek	99.97
cd06639	291	STKc_myosinIIIB Catalytic domain of the Protein Se	99.97
cd06620	284	PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr	99.97
cd06630	268	STKc_MEKK1 Catalytic domain of the Protein Serine/	99.97
cd06611	280	STKc_SLK_like Catalytic domain of Ste20-like kinas	99.97
cd06644	292	STKc_STK10_LOK Catalytic domain of the Protein Ser	99.97
cd07866	311	STKc_BUR1 Catalytic domain of the Serine/Threonine	99.97
cd07877	345	STKc_p38alpha_MAPK14 Catalytic domain of the Serin	99.97
cd06643	282	STKc_SLK Catalytic domain of the Protein Serine/Th	99.97
cd07830	283	STKc_MAK_like Catalytic domain of Male germ cell-A	99.97
cd06645	267	STKc_MAP4K3 Catalytic domain of the Protein Serine	99.97
cd06652	265	STKc_MEKK2 Catalytic domain of the Protein Serine/	99.97
cd06659	297	STKc_PAK6 Catalytic domain of the Protein Serine/T	99.96
cd07879	342	STKc_p38delta_MAPK13 Catalytic domain of the Serin	99.96
cd07857	332	STKc_MPK1 Catalytic domain of the Serine/Threonine	99.96
KOG0983	391	consensus Mitogen-activated protein kinase (MAPK)	99.96
cd05609	305	STKc_MAST Catalytic domain of the Protein Serine/T	99.96
KOG0608	1034	consensus Warts/lats-like serine threonine kinases	99.96
cd06642	277	STKc_STK25-YSK1 Catalytic domain of the Protein Se	99.96
cd05096	304	PTKc_DDR1 Catalytic domain of the Protein Tyrosine	99.96
cd06629	272	STKc_MAPKKK_Bck1_like Catalytic domain of fungal B	99.96
cd06640	277	STKc_MST4 Catalytic domain of the Protein Serine/T	99.96
PLN00009	294	cyclin-dependent kinase A; Provisional	99.96
cd06917	277	STKc_NAK1_like Catalytic domain of Fungal Nak1-lik	99.96
cd07856	328	STKc_Sty1_Hog1 Catalytic domain of the Serine/Thre	99.96
cd06638	286	STKc_myosinIIIA Catalytic domain of the Protein Se	99.96
cd05577	277	STKc_GRK Catalytic domain of the Protein Serine/Th	99.96
cd06656	297	STKc_PAK3 Catalytic domain of the Protein Serine/T	99.96
cd07842	316	STKc_CDK8_like Catalytic domain of Cyclin-Dependen	99.96
KOG1095	1025	consensus Protein tyrosine kinase [Signal transduc	99.96
cd05049	280	PTKc_Trk Catalytic domain of the Protein Tyrosine	99.96
PHA03210	501	serine/threonine kinase US3; Provisional	99.96
cd07840	287	STKc_CDK9_like Catalytic domain of Cyclin-Dependen	99.96
cd07829	282	STKc_CDK_like Catalytic domain of Cyclin-Dependent	99.96
cd00192	262	PTKc Catalytic domain of Protein Tyrosine Kinases.	99.96
cd05118	283	STKc_CMGC Catalytic domain of CMGC family Serine/T	99.96
cd05106	374	PTKc_CSF-1R Catalytic domain of the Protein Tyrosi	99.96
cd06608	275	STKc_myosinIII_like Catalytic domain of Class III	99.96
cd05048	283	PTKc_Ror Catalytic Domain of the Protein Tyrosine	99.96
cd08221	256	STKc_Nek9 Catalytic domain of the Protein Serine/T	99.96
cd08217	265	STKc_Nek2 Catalytic domain of the Protein Serine/T	99.96
cd06648	285	STKc_PAK_II Catalytic domain of the Protein Serine	99.96
cd07864	302	STKc_CDK12 Catalytic domain of the Serine/Threonin	99.96
cd06632	258	STKc_MEKK1_plant Catalytic domain of the Protein S	99.96
cd05054	337	PTKc_VEGFR Catalytic domain of the Protein Tyrosin	99.96
cd06623	264	PKc_MAPKK_plant_like Catalytic domain of Plant dua	99.96
cd08226	328	PK_STRAD_beta Pseudokinase domain of STE20-related	99.96
cd06646	267	STKc_MAP4K5 Catalytic domain of the Protein Serine	99.96
cd06613	262	STKc_MAP4K3_like Catalytic domain of Mitogen-activ	99.96
cd05579	265	STKc_MAST_like Catalytic domain of Microtubule-ass	99.96
KOG0664	449	consensus Nemo-like MAPK-related serine/threonine	99.96
cd06624	268	STKc_ASK Catalytic domain of the Protein Serine/Th	99.96
cd05578	258	STKc_Yank1 Catalytic domain of the Protein Serine/	99.96
cd07852	337	STKc_MAPK15 Catalytic domain of the Serine/Threoni	99.96
cd08218	256	STKc_Nek1 Catalytic domain of the Protein Serine/T	99.96
cd05104	375	PTKc_Kit Catalytic domain of the Protein Tyrosine	99.96
cd07838	287	STKc_CDK4_6_like Catalytic domain of Cyclin-Depend	99.96
cd05064	266	PTKc_EphR_A10 Catalytic domain of the Protein Tyro	99.96
cd08220	256	STKc_Nek8 Catalytic domain of the Protein Serine/T	99.96
cd06616	288	PKc_MKK4 Catalytic domain of the dual-specificity	99.96
cd06617	283	PKc_MKK3_6 Catalytic domain of the dual-specificit	99.96
cd05581	280	STKc_PDK1 Catalytic domain of the Protein Serine/T	99.96
cd06626	264	STKc_MEKK4 Catalytic domain of the Protein Serine/	99.96
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.96
cd05123	250	STKc_AGC Catalytic domain of AGC family Protein Se	99.96
PLN03225	566	Serine/threonine-protein kinase SNT7; Provisional	99.96
cd07854	342	STKc_MAPK4_6 Catalytic domain of the Serine/Threon	99.96
cd06641	277	STKc_MST3 Catalytic domain of the Protein Serine/T	99.96
cd05062	277	PTKc_IGF-1R Catalytic domain of the Protein Tyrosi	99.96
KOG0194	474	consensus Protein tyrosine kinase [Signal transduc	99.96
cd05061	288	PTKc_InsR Catalytic domain of the Protein Tyrosine	99.96
cd05122	253	PKc_STE Catalytic domain of STE family Protein Kin	99.96
cd05115	257	PTKc_Zap-70 Catalytic domain of the Protein Tyrosi	99.96
cd05040	257	PTKc_Ack_like Catalytic domain of the Protein Tyro	99.96
cd05082	256	PTKc_Csk Catalytic domain of the Protein Tyrosine	99.96
cd06657	292	STKc_PAK4 Catalytic domain of the Protein Serine/T	99.96
cd05084	252	PTKc_Fes Catalytic domain of the Protein Tyrosine	99.96
KOG0584	632	consensus Serine/threonine protein kinase [General	99.96
cd05613	290	STKc_MSK1_N N-terminal catalytic domain of the Pro	99.96
cd05051	296	PTKc_DDR Catalytic domain of the Protein Tyrosine	99.96
cd06653	264	STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kina	99.96
KOG4236	888	consensus Serine/threonine protein kinase PKC mu/P	99.96
cd05036	277	PTKc_ALK_LTK Catalytic domain of the Protein Tyros	99.96
PF07714	259	Pkinase_Tyr: Protein tyrosine kinase Protein kinas	99.96
cd05116	257	PTKc_Syk Catalytic domain of the Protein Tyrosine	99.96
cd08215	258	STKc_Nek Catalytic domain of the Protein Serine/Th	99.96
cd06606	260	STKc_MAPKKK Catalytic domain of the Protein Serine	99.96
cd05060	257	PTKc_Syk_like Catalytic domain of Spleen Tyrosine	99.96
cd05091	283	PTKc_Ror2 Catalytic domain of the Protein Tyrosine	99.96
cd05088	303	PTKc_Tie2 Catalytic domain of the Protein Tyrosine	99.95
cd06647	293	STKc_PAK_I Catalytic domain of the Protein Serine/	99.95
cd06614	286	STKc_PAK Catalytic domain of the Protein Serine/Th	99.95
cd05105	400	PTKc_PDGFR_alpha Catalytic domain of the Protein T	99.95
cd05032	277	PTKc_InsR_like Catalytic domain of Insulin Recepto	99.95
cd08219	255	STKc_Nek3 Catalytic domain of the Protein Serine/T	99.95
cd05103	343	PTKc_VEGFR2 Catalytic domain of the Protein Tyrosi	99.95
cd05053	293	PTKc_FGFR Catalytic domain of the Protein Tyrosine	99.95
cd05039	256	PTKc_Csk_like Catalytic domain of C-terminal Src k	99.95
KOG1187	361	consensus Serine/threonine protein kinase [Signal	99.95
cd06627	254	STKc_Cdc7_like Catalytic domain of Cell division c	99.95
cd08225	257	STKc_Nek5 Catalytic domain of the Protein Serine/T	99.95
cd05079	284	PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the	99.95
cd08530	256	STKc_CNK2-like Catalytic domain of the Protein Ser	99.95
cd05085	250	PTKc_Fer Catalytic domain of the Protein Tyrosine	99.95
cd05089	297	PTKc_Tie1 Catalytic domain of the Protein Tyrosine	99.95
cd05098	307	PTKc_FGFR1 Catalytic domain of the Protein Tyrosin	99.95
cd05077	262	PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd05108	316	PTKc_EGFR Catalytic domain of the Protein Tyrosine	99.95
cd05097	295	PTKc_DDR_like Catalytic domain of Discoidin Domain	99.95
cd05583	288	STKc_MSK_N N-terminal catalytic domain of the Prot	99.95
cd05080	283	PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the	99.95
cd05058	262	PTKc_Met_Ron Catalytic domain of the Protein Tyros	99.95
cd05090	283	PTKc_Ror1 Catalytic domain of the Protein Tyrosine	99.95
cd06607	307	STKc_TAO Catalytic domain of the Protein Serine/Th	99.95
cd05093	288	PTKc_TrkB Catalytic domain of the Protein Tyrosine	99.95
cd05055	302	PTKc_PDGFR Catalytic domain of the Protein Tyrosin	99.95
cd05101	304	PTKc_FGFR2 Catalytic domain of the Protein Tyrosin	99.95
cd05109	279	PTKc_HER2 Catalytic domain of the Protein Tyrosine	99.95
cd05052	263	PTKc_Abl Catalytic domain of the Protein Tyrosine	99.95
KOG0670	752	consensus U4/U6-associated splicing factor PRP4 [R	99.95
cd05033	266	PTKc_EphR Catalytic domain of Ephrin Receptor Prot	99.95
cd05071	262	PTKc_Src Catalytic domain of the Protein Tyrosine	99.95
cd06618	296	PKc_MKK7 Catalytic domain of the dual-specificity	99.95
cd05094	291	PTKc_TrkC Catalytic domain of the Protein Tyrosine	99.95
cd05035	273	PTKc_Axl_like Catalytic Domain of Axl-like Protein	99.95
cd05070	260	PTKc_Fyn_Yrk Catalytic domain of the Protein Tyros	99.95
cd05043	280	PTK_Ryk Pseudokinase domain of Ryk (Receptor relat	99.95
cd05099	314	PTKc_FGFR4 Catalytic domain of the Protein Tyrosin	99.95
cd06633	313	STKc_TAO3 Catalytic domain of the Protein Serine/T	99.95
smart00219	258	TyrKc Tyrosine kinase, catalytic domain. Phosphotr	99.95
cd05072	261	PTKc_Lyn Catalytic domain of the Protein Tyrosine	99.95
cd05047	270	PTKc_Tie Catalytic domain of Tie Protein Tyrosine	99.95
cd08228	267	STKc_Nek6 Catalytic domain of the Protein Serine/T	99.95
cd05075	272	PTKc_Axl Catalytic domain of the Protein Tyrosine	99.95
cd05114	256	PTKc_Tec_Rlk Catalytic domain of the Protein Tyros	99.95
cd05041	251	PTKc_Fes_like Catalytic domain of Fes-like Protein	99.95
cd05050	288	PTKc_Musk Catalytic domain of the Protein Tyrosine	99.95
cd05095	296	PTKc_DDR2 Catalytic domain of the Protein Tyrosine	99.95
cd05056	270	PTKc_FAK Catalytic domain of the Protein Tyrosine	99.95
KOG1151	775	consensus Tousled-like protein kinase [Signal tran	99.95
cd05107	401	PTKc_PDGFR_beta Catalytic domain of the Protein Ty	99.95
cd05063	268	PTKc_EphR_A2 Catalytic domain of the Protein Tyros	99.95
cd05044	269	PTKc_c-ros Catalytic domain of the Protein Tyrosin	99.95
cd05059	256	PTKc_Tec_like Catalytic domain of Tec-like Protein	99.95
cd05610	669	STKc_MASTL Catalytic domain of the Protein Serine/	99.95
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	99.95
cd05113	256	PTKc_Btk_Bmx Catalytic domain of the Protein Tyros	99.95
cd05092	280	PTKc_TrkA Catalytic domain of the Protein Tyrosine	99.95
cd05068	261	PTKc_Frk_like Catalytic domain of Fyn-related kina	99.95
cd05148	261	PTKc_Srm_Brk Catalytic domain of the Protein Tyros	99.95
cd08222	260	STKc_Nek11 Catalytic domain of the Protein Serine/	99.95
cd05066	267	PTKc_EphR_A Catalytic domain of the Protein Tyrosi	99.95
cd05042	269	PTKc_Aatyk Catalytic domain of the Protein Tyrosin	99.95
cd06635	317	STKc_TAO1 Catalytic domain of the Protein Serine/T	99.95
cd05069	260	PTKc_Yes Catalytic domain of the Protein Tyrosine	99.95
smart00750	176	KIND kinase non-catalytic C-lobe domain. It is an	99.95
cd05076	274	PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of th	99.95
cd05111	279	PTK_HER3 Pseudokinase domain of the Protein Tyrosi	99.95
cd05037	259	PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the	99.95
cd05100	334	PTKc_FGFR3 Catalytic domain of the Protein Tyrosin	99.95
cd08229	267	STKc_Nek7 Catalytic domain of the Protein Serine/T	99.95
cd08224	267	STKc_Nek6_Nek7 Catalytic domain of the Protein Ser	99.95
KOG1094	807	consensus Discoidin domain receptor DDR1 [Signal t	99.95
KOG0193	678	consensus Serine/threonine protein kinase RAF [Sig	99.95
cd05065	269	PTKc_EphR_B Catalytic domain of the Protein Tyrosi	99.95
cd05067	260	PTKc_Lck_Blk Catalytic domain of the Protein Tyros	99.95
cd06634	308	STKc_TAO2 Catalytic domain of the Protein Serine/T	99.95
cd05045	290	PTKc_RET Catalytic domain of the Protein Tyrosine	99.94
cd05087	269	PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein	99.94
cd05083	254	PTKc_Chk Catalytic domain of the Protein Tyrosine	99.94
KOG0695	593	consensus Serine/threonine protein kinase [Signal	99.94
cd05046	275	PTK_CCK4 Pseudokinase domain of the Protein Tyrosi	99.94
cd05034	261	PTKc_Src_like Catalytic domain of Src kinase-like	99.94
KOG4250	732	consensus TANK binding protein kinase TBK1 [Signal	99.94
cd05073	260	PTKc_Hck Catalytic domain of the Protein Tyrosine	99.94
cd05057	279	PTKc_EGFR_like Catalytic domain of Epidermal Growt	99.94
cd05078	258	PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain	99.94
cd05081	284	PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of	99.94
smart00220	244	S_TKc Serine/Threonine protein kinases, catalytic	99.94
cd05112	256	PTKc_Itk Catalytic domain of the Protein Tyrosine	99.94
cd05038	284	PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the P	99.94
cd05110	303	PTKc_HER4 Catalytic domain of the Protein Tyrosine	99.94
KOG1006	361	consensus Mitogen-activated protein kinase (MAPK)	99.94
cd05086	268	PTKc_Aatyk2 Catalytic domain of the Protein Tyrosi	99.94
KOG4257	974	consensus Focal adhesion tyrosine kinase FAK, cont	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.93
KOG0199	1039	consensus ACK and related non-receptor tyrosine ki	99.93
KOG1027	903	consensus Serine/threonine protein kinase and endo	99.93
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	99.93
cd08528	269	STKc_Nek10 Catalytic domain of the Protein Serine/	99.93
cd05074	273	PTKc_Tyro3 Catalytic domain of the Protein Tyrosin	99.93
KOG2345	302	consensus Serine/threonine protein kinase/TGF-beta	99.93
PLN03224	507	probable serine/threonine protein kinase; Provisio	99.93
KOG4278	1157	consensus Protein tyrosine kinase [Signal transduc	99.92
KOG0200	609	consensus Fibroblast/platelet-derived growth facto	99.92
KOG0576	829	consensus Mitogen-activated protein kinase kinase	99.92
PHA02882	294	putative serine/threonine kinase; Provisional	99.92
KOG1167	418	consensus Serine/threonine protein kinase of the C	99.9
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.9
KOG1025	1177	consensus Epidermal growth factor receptor EGFR an	99.89
KOG3653	534	consensus Transforming growth factor beta/activin	99.89
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.89
KOG0984	282	consensus Mitogen-activated protein kinase (MAPK)	99.88
KOG2052	513	consensus Activin A type IB receptor, serine/threo	99.88
KOG0603	612	consensus Ribosomal protein S6 kinase [Signal tran	99.83
cd00180	215	PKc Catalytic domain of Protein Kinases. Protein K	99.83
KOG1345	378	consensus Serine/threonine kinase [Signal transduc	99.83
KOG1152	772	consensus Signal transduction serine/threonine kin	99.83
KOG1024	563	consensus Receptor-like protein tyrosine kinase RY	99.8
smart00221	225	STYKc Protein kinase; unclassified specificity. Ph	99.79
KOG1033	516	consensus eIF-2alpha kinase PEK/EIF2AK3 [Translati	99.72
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.71
COG0515	384	SPS1 Serine/threonine protein kinase [General func	99.68
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.56
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.54
KOG1023	484	consensus Natriuretic peptide receptor, guanylate	99.53
KOG0590	601	consensus Checkpoint kinase and related serine/thr	99.5
KOG4158	598	consensus BRPK/PTEN-induced protein kinase [Signal	99.5
PRK09188	365	serine/threonine protein kinase; Provisional	99.45
PF14531	288	Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_	99.44
PRK10359	232	lipopolysaccharide core biosynthesis protein; Prov	99.41
KOG0606	1205	consensus Microtubule-associated serine/threonine	99.39
PRK12274	218	serine/threonine protein kinase; Provisional	99.27
cd05147	190	RIO1_euk RIO kinase family; eukaryotic RIO1, catal	99.27
KOG1164	322	consensus Casein kinase (serine/threonine/tyrosine	99.23
cd05145	190	RIO1_like RIO kinase family; RIO1, RIO3 and simila	99.14
KOG1165	449	consensus Casein kinase (serine/threonine/tyrosine	99.05
KOG1163	341	consensus Casein kinase (serine/threonine/tyrosine	98.95
smart00090	237	RIO RIO-like kinase.	98.93
KOG1166	974	consensus Mitotic checkpoint serine/threonine prot	98.91
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.85
TIGR03724	199	arch_bud32 Kae1-associated kinase Bud32. Members o	98.83
PRK10345	210	hypothetical protein; Provisional	98.82
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.8
cd05144	198	RIO2_C RIO kinase family; RIO2, C-terminal catalyt	98.75
PRK01723	239	3-deoxy-D-manno-octulosonic-acid kinase; Reviewed	98.75
KOG0576	829	consensus Mitogen-activated protein kinase kinase	98.73
PRK14879	211	serine/threonine protein kinase; Provisional	98.7
KOG1266	458	consensus Protein kinase [Signal transduction mech	98.67
KOG0601	524	consensus Cyclin-dependent kinase WEE1 [Cell cycle	98.5
PRK09605	535	bifunctional UGMP family protein/serine/threonine	98.49
PRK04750	537	ubiB putative ubiquinone biosynthesis protein UbiB	98.46
TIGR01982	437	UbiB 2-polyprenylphenol 6-hydroxylase. This model	98.46
cd05119	187	RIO RIO kinase family, catalytic domain. The RIO k	98.45
cd05120	155	APH_ChoK_like Aminoglycoside 3'-phosphotransferase	98.26
cd05146	197	RIO3_euk RIO kinase family; eukaryotic RIO3, catal	98.14
COG3642	204	Mn2+-dependent serine/threonine protein kinase [Si	98.1
KOG1243	690	consensus Protein kinase [General function predict	97.97
cd05151	170	ChoK Choline Kinase (ChoK). The ChoK subfamily is	97.84
KOG3087	229	consensus Serine/threonine protein kinase [General	97.76
PRK15123	268	lipopolysaccharide core heptose(I) kinase RfaP; Pr	97.64
COG4248	637	Uncharacterized protein with protein kinase and he	97.64
COG0661	517	AarF Predicted unusual protein kinase [General fun	97.54
PF06293	206	Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family;	97.5
KOG1035	1351	consensus eIF-2alpha kinase GCN2 [Translation, rib	97.45
PF01163	188	RIO1: RIO1 family; InterPro: IPR018934 Protein pho	97.38
PF06176	229	WaaY: Lipopolysaccharide core biosynthesis protein	97.23
cd05154	223	ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 an	97.16
KOG1235	538	consensus Predicted unusual protein kinase [Genera	97.16
KOG3741	655	consensus Poly(A) ribonuclease subunit [RNA proces	97.04
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	96.55
COG0478	304	RIO-like serine/threonine protein kinase fused to	95.24
KOG1093	725	consensus Predicted protein kinase (contains TBC a	95.05
PRK09902	216	hypothetical protein; Provisional	94.92
KOG1290	590	consensus Serine/threonine protein kinase [Signal	94.33
COG1718	268	RIO1 Serine/threonine protein kinase involved in c	93.66
COG2112	201	Predicted Ser/Thr protein kinase [Signal transduct	93.05
cd05155	235	APH_ChoK_like_1 Uncharacterized bacterial proteins	89.63
TIGR02172	226	Fb_sc_TIGR02172 Fibrobacter succinogenes paralogou	89.36
PF12260	188	PIP49_C: Protein-kinase domain of FAM69; InterPro:	87.08
KOG2268	465	consensus Serine/threonine protein kinase [Signal	85.36
PRK10271	188	thiK thiamine kinase; Provisional	81.08

>KOG0615 consensus Serine/threonine protein kinase Chk2 and related proteins [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.1e-46  Score=330.94  Aligned_cols=230  Identities=20%  Similarity=0.263  Sum_probs=188.6

Q ss_pred             cccCcccccccccCccchhhh------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQK------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..+|+|.++.-.+...+      ..++++.+....  ++|+.+|+..+.....+ ..|+||||++||+|++++...
T Consensus       194 ~~tgk~vAiKIi~krk~~~~s~~~~~~~~v~~EieILkk--L~HP~IV~~~d~f~~~d-s~YmVlE~v~GGeLfd~vv~n  270 (475)
T KOG0615|consen  194 KKTGKQVAIKIINKRKSTGCSRAIAKTRDVQNEIEILKK--LSHPNIVRIKDFFEVPD-SSYMVLEYVEGGELFDKVVAN  270 (475)
T ss_pred             cccCcEEEeeeeehhhcccccccccchhhhHHHHHHHHh--cCCCCEEEEeeeeecCC-ceEEEEEEecCccHHHHHHhc
Confidence            467888999999885555533      345677777777  57999999988776654 459999999999999999999


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecC--CCCCCCccCCCcchhHHH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l  163 (358)
                      ..+.+...+.++.|++.++.|+|+.||+||    +|||+..+   ..+||+|||+|+..+  ..+.+.||||.|.|||++
T Consensus       271 k~l~ed~~K~~f~Qll~avkYLH~~GI~HRDiKPeNILl~~~~e~~llKItDFGlAK~~g~~sfm~TlCGTpsYvAPEVl  350 (475)
T KOG0615|consen  271 KYLREDLGKLLFKQLLTAVKYLHSQGIIHRDIKPENILLSNDAEDCLLKITDFGLAKVSGEGSFMKTLCGTPSYVAPEVL  350 (475)
T ss_pred             cccccchhHHHHHHHHHHHHHHHHcCcccccCCcceEEeccCCcceEEEecccchhhccccceehhhhcCCccccChhhe
Confidence            999999999999999999999999999999    99999876   789999999999885  447788999999999999


Q ss_pred             hCCC---CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          164 LGSK---YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       164 ~~~~---~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .+..   |..++||||+||+||.+|+|.+||.+..+...     ...+|                               
T Consensus       351 ~~kg~~~~~~kVDiWSlGcvLfvcLsG~pPFS~~~~~~s-----l~eQI-------------------------------  394 (475)
T KOG0615|consen  351 ASKGVEYYPSKVDIWSLGCVLFVCLSGYPPFSEEYTDPS-----LKEQI-------------------------------  394 (475)
T ss_pred             ecCCeecccchheeeeccceEEEEeccCCCcccccCCcc-----HHHHH-------------------------------
Confidence            9865   35589999999999999999999976553220     11111                               


Q ss_pred             hhccCCcchhhHHhhh----cCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          241 RRLRFWPMNKVLVEKY----DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                                 ..+.|    ..+...+.++.+||.+||..||++|||++|+|+||||+..+.
T Consensus       395 -----------~~G~y~f~p~~w~~Iseea~dlI~~mL~VdP~~R~s~~eaL~hpW~~~~~~  445 (475)
T KOG0615|consen  395 -----------LKGRYAFGPLQWDRISEEALDLINWMLVVDPENRPSADEALNHPWFKDAPC  445 (475)
T ss_pred             -----------hcCcccccChhhhhhhHHHHHHHHHhhEeCcccCcCHHHHhcChhhhcccc
Confidence                       11111    234556899999999999999999999999999999997654

>KOG0600 consensus Cdc2-related protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-43  Score=320.72  Aligned_cols=267  Identities=21%  Similarity=0.231  Sum_probs=212.5

Q ss_pred             cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccc-ccccc
Q 045353           19 TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQN-DSVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~-~~~~~   95 (358)
                      .++|..||.|-..-+-- +.--+-.-|+.+...+  +.|++|+.+....... .+.+|+|.|||+.- |.-++. ..+.+
T Consensus       139 ~~tgkivALKKvr~d~~~~~~~~t~~REI~ILr~--l~HpNIikL~eivt~~~~~siYlVFeYMdhD-L~GLl~~p~vkf  215 (560)
T KOG0600|consen  139 LETGKIVALKKVRFDNEKEGFPITAIREIKILRR--LDHPNIIKLEEIVTSKLSGSIYLVFEYMDHD-LSGLLSSPGVKF  215 (560)
T ss_pred             cccCcEEEEEEeecccCCCcchHHHHHHHHHHHh--cCCCcccceeeEEEecCCceEEEEEecccch-hhhhhcCCCccc
Confidence            56777788777665442 2333444577777777  5788888888877666 67999999999974 444554 46789


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC----CCCCCCccCCCcchhHHHhCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH----KQFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~----~~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      ++.||+.+++||++|+.|+|+.|++||    .|||||++|.+||+|||+|++..    ..++..+-|.||+|||+|+|..
T Consensus       216 t~~qIKc~mkQLl~Gl~~cH~~gvlHRDIK~SNiLidn~G~LKiaDFGLAr~y~~~~~~~~T~rVvTLWYRpPELLLG~t  295 (560)
T KOG0600|consen  216 TEPQIKCYMKQLLEGLEYCHSRGVLHRDIKGSNILIDNNGVLKIADFGLARFYTPSGSAPYTSRVVTLWYRPPELLLGAT  295 (560)
T ss_pred             ChHHHHHHHHHHHHHHHHHhhcCeeeccccccceEEcCCCCEEeccccceeeccCCCCcccccceEEeeccChHHhcCCc
Confidence            999999999999999999999999999    89999999999999999998654    2478889999999999999976


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       |+.++|+||+||||.||+.|++.|.+.+      +.+|+..|+++||.+.+..|.....  .++..        .....
T Consensus       296 ~Yg~aVDlWS~GCIl~El~~gkPI~~G~t------EveQl~kIfklcGSP~e~~W~~~kL--P~~~~--------~kp~~  359 (560)
T KOG0600|consen  296 SYGTAVDLWSVGCILAELFLGKPILQGRT------EVEQLHKIFKLCGSPTEDYWPVSKL--PHATI--------FKPQQ  359 (560)
T ss_pred             ccccceeehhhhHHHHHHHcCCCCcCCcc------HHHHHHHHHHHhCCCChhccccccC--Ccccc--------cCCCC
Confidence             9999999999999999999999999887      8999999999999998877652111  01110        01112


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCCCCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAG  307 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~~~~~~  307 (358)
                      +..+.+.+.   ...++..+.+|+..||..||.+|.||.++|+|+||...+.+++|.....
T Consensus       360 ~y~r~l~E~---~~~~~~~~l~Ll~~lL~ldP~kR~tA~~aL~seyF~t~p~~~~p~~Lp~  417 (560)
T KOG0600|consen  360 PYKRRLRET---FKDFPASALDLLEKLLSLDPDKRGTASSALQSEYFTTEPLPCDPSSLPK  417 (560)
T ss_pred             cccchHHHH---hccCCHHHHHHHHHHhccCccccccHHHHhcCcccccCCCCCCcccCCC
Confidence            223333333   2344678889999999999999999999999999998888888876655

>KOG0581 consensus Mitogen-activated protein kinase kinase (MAP2K) [Signal transduction mechanisms]

Probab=100.00  E-value=2.3e-44  Score=315.42  Aligned_cols=232  Identities=19%  Similarity=0.224  Sum_probs=196.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++...|.|+........-++.+-|+.+....-  ..+++|..+.........++|+||||+||||.+++......++...
T Consensus       103 t~~i~AlK~I~~~~~~~~~~Qi~rEl~il~~~--~spyIV~~ygaF~~~~~~isI~mEYMDgGSLd~~~k~~g~i~E~~L  180 (364)
T KOG0581|consen  103 TGKIYALKVILLNIDPALQKQILRELEILRSC--QSPYIVGFYGAFYSNGEEISICMEYMDGGSLDDILKRVGRIPEPVL  180 (364)
T ss_pred             CCeEEEEEeecccCCHHHHHHHHHHHHHHhhC--CCCCeeeEeEEEEeCCceEEeehhhcCCCCHHHHHhhcCCCCHHHH
Confidence            45567999998888899999999998887763  5667776666554433369999999999999999998888999999


Q ss_pred             hHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          101 DNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      ..+..++++|+.|+|+ .+||||    +|||++..|.|||||||.|...... ..+.+||..|||||.+.+..|+.++||
T Consensus       181 ~~ia~~VL~GL~YLh~~~~IIHRDIKPsNlLvNskGeVKicDFGVS~~lvnS~a~tfvGT~~YMsPERi~g~~Ys~~sDI  260 (364)
T KOG0581|consen  181 GKIARAVLRGLSYLHEERKIIHRDIKPSNLLVNSKGEVKICDFGVSGILVNSIANTFVGTSAYMSPERISGESYSVKSDI  260 (364)
T ss_pred             HHHHHHHHHHHHHHhhccCeeeccCCHHHeeeccCCCEEeccccccHHhhhhhcccccccccccChhhhcCCcCCcccce
Confidence            9999999999999995 999999    9999999999999999999765444 477899999999999999999999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      ||||++++|+++|++||.....    .....+..+..++..+|+.                                   
T Consensus       261 WSLGLsllE~a~GrfP~~~~~~----~~~~~~~Ll~~Iv~~ppP~-----------------------------------  301 (364)
T KOG0581|consen  261 WSLGLSLLELAIGRFPYPPPNP----PYLDIFELLCAIVDEPPPR-----------------------------------  301 (364)
T ss_pred             ecccHHHHHHhhCCCCCCCcCC----CCCCHHHHHHHHhcCCCCC-----------------------------------
Confidence            9999999999999999976511    1345566666666644432                                   


Q ss_pred             hhcCChh-hHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          255 KYDFNER-DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       255 ~~~~~~~-~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         +|.. ++++|++||..||+.||.+|+|++|+|+|||++..
T Consensus       302 ---lP~~~fS~ef~~FV~~CL~Kdp~~R~s~~qLl~Hpfi~~~  341 (364)
T KOG0581|consen  302 ---LPEGEFSPEFRSFVSCCLRKDPSERPSAKQLLQHPFIKKF  341 (364)
T ss_pred             ---CCcccCCHHHHHHHHHHhcCCcccCCCHHHHhcCHHHhhc
Confidence               2333 68999999999999999999999999999999853

>KOG0660 consensus Mitogen-activated protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-42  Score=302.17  Aligned_cols=261  Identities=23%  Similarity=0.308  Sum_probs=207.3

Q ss_pred             cccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC----CCCCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..||+|-....|.. ..-+|.-|+.|-..-.  .|.+++.+.+....    .-.+.|+|+|+| +.+|...+..+.
T Consensus        44 ~~t~~~VAIKKi~~~F~~~~~akRtlRElklLr~~--~HeNIi~l~di~~p~~~~~f~DvYiV~elM-etDL~~iik~~~  120 (359)
T KOG0660|consen   44 KRTGEKVAIKKILNPFENQIDAKRTLRELKLLRHL--RHENIIGLLDIFRPPSRDKFNDVYLVFELM-ETDLHQIIKSQQ  120 (359)
T ss_pred             cCCCCEeehhhhhhhhhchHHHHHHHHHHHHHHHh--cCCCcceEEeecccccccccceeEEehhHH-hhHHHHHHHcCc
Confidence            667789999988865544 3457777777766654  47777766665544    357899999999 778888888888


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-----CCCCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-----KQFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-----~~~~~~~gt~~Y~aPE~l~  164 (358)
                      .+.+.++..++.|++.|+.|+|+.+++||    .|+|++.+..+||||||+|+...     ..++..+.|.||+|||++.
T Consensus       121 ~L~d~H~q~f~YQiLrgLKyiHSAnViHRDLKPsNll~n~~c~lKI~DFGLAR~~~~~~~~~~mTeYVaTRWYRAPElll  200 (359)
T KOG0660|consen  121 DLTDDHAQYFLYQILRGLKYIHSANVIHRDLKPSNLLLNADCDLKICDFGLARYLDKFFEDGFMTEYVATRWYRAPELLL  200 (359)
T ss_pred             cccHHHHHHHHHHHHHhcchhhcccccccccchhheeeccCCCEEeccccceeeccccCcccchhcceeeeeecCHHHHh
Confidence            89999999999999999999999999999    89999999999999999999873     4468889999999999998


Q ss_pred             CC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC--hhhhhccCCchhhh
Q 045353          165 GS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS--RDFFNRHGDLRHIR  241 (358)
Q Consensus       165 ~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~  241 (358)
                      .. .|+.++||||+|||+.||++|++.|.|.+      ..+++..|.+++|+++++........  ..+....+.     
T Consensus       201 ~~~~Yt~aiDiWSvGCI~AEmL~gkplFpG~d------~v~Ql~lI~~~lGtP~~e~l~~i~s~~ar~yi~slp~-----  269 (359)
T KOG0660|consen  201 NSSEYTKAIDIWSVGCILAEMLTGKPLFPGKD------YVHQLQLILELLGTPSEEDLQKIRSEKARPYIKSLPQ-----  269 (359)
T ss_pred             ccccccchhhhhhhhHHHHHHHcCCCCCCCCc------hHHHHHHHHHhcCCCCHHHHHHhccHHHHHHHHhCCC-----
Confidence            64 59999999999999999999999999877      78999999999999988765443311  111111111     


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE  301 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~  301 (358)
                       ....++..       ..+..++.+++|+.+||.+||.+|+|++|+|+||||..-..+..
T Consensus       270 -~p~~~f~~-------~fp~a~p~AidLlekmL~fdP~kRita~eAL~hPYl~~~hdp~d  321 (359)
T KOG0660|consen  270 -IPKQPFSS-------IFPNANPLAIDLLEKMLVFDPKKRITAEEALAHPYLAPYHDPED  321 (359)
T ss_pred             -CCCCCHHH-------HcCCCCHHHHHHHHHHhccCccccCCHHHHhcChhhhhhcCCcc
Confidence             11111111       12355789999999999999999999999999999997544443

>KOG0575 consensus Polo-like serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4e-43  Score=324.49  Aligned_cols=228  Identities=21%  Similarity=0.276  Sum_probs=197.6

Q ss_pred             cccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..+|+|+....+...  ++.++.++.+...+  +.|++||..+...+ ++...|||.|+|..|+|..++.....++
T Consensus        40 ~~tge~~A~KvVpk~~l~k~~~reKv~~EIeIHr~--L~HpnIV~f~~~FE-Ds~nVYivLELC~~~sL~el~Krrk~lt  116 (592)
T KOG0575|consen   40 LDTGEVVAVKVVPKKLLKKPKQREKVLNEIEIHRS--LKHPNIVQFYHFFE-DSNNVYIVLELCHRGSLMELLKRRKPLT  116 (592)
T ss_pred             cCCCcEEEEEEeehHHhcCcchHHHHHHHHHHHHh--cCCCcEEeeeeEee-cCCceEEEEEecCCccHHHHHHhcCCCC
Confidence            4899999999999977655  55666677777766  57888888776555 4567899999999999999999888999


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      |.+++.+++||+.|+.|+|+++||||    .|++++++.+|||+|||+|....   +.-.+.||||-|.|||++...+++
T Consensus       117 EpEary~l~QIv~GlkYLH~~~IiHRDLKLGNlfL~~~~~VKIgDFGLAt~le~~~Erk~TlCGTPNYIAPEVl~k~gHs  196 (592)
T KOG0575|consen  117 EPEARYFLRQIVEGLKYLHSLGIIHRDLKLGNLFLNENMNVKIGDFGLATQLEYDGERKKTLCGTPNYIAPEVLNKSGHS  196 (592)
T ss_pred             cHHHHHHHHHHHHHHHHHHhcCceecccchhheeecCcCcEEecccceeeeecCcccccceecCCCcccChhHhccCCCC
Confidence            99999999999999999999999999    89999999999999999998765   556778999999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ..+||||+|||||.||.|+|||...+      -.+.                                          +.
T Consensus       197 fEvDiWSlGcvmYtLL~G~PPFetk~------vket------------------------------------------y~  228 (592)
T KOG0575|consen  197 FEVDIWSLGCVMYTLLVGRPPFETKT------VKET------------------------------------------YN  228 (592)
T ss_pred             CchhhhhhhhHHHhhhhCCCCcccch------HHHH------------------------------------------HH
Confidence            99999999999999999999996443      1111                                          23


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ++....|.+|...+.++.+||.+||+.||.+|||+++||.|+||..+.
T Consensus       229 ~Ik~~~Y~~P~~ls~~A~dLI~~lL~~~P~~Rpsl~~vL~h~Ff~~g~  276 (592)
T KOG0575|consen  229 KIKLNEYSMPSHLSAEAKDLIRKLLRPNPSERPSLDEVLDHPFFKSGF  276 (592)
T ss_pred             HHHhcCcccccccCHHHHHHHHHHhcCCcccCCCHHHHhcCHhhhCCC
Confidence            445557778888999999999999999999999999999999996553

>KOG0663 consensus Protein kinase PITSLRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.1e-42  Score=299.81  Aligned_cols=272  Identities=24%  Similarity=0.259  Sum_probs=209.0

Q ss_pred             cCcccccccccCccchhhhHHh--hHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCccccccccc-ccC
Q 045353           21 SSASKENKSLYGDLTKNQKKKV--KKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSV-VNN   96 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~-~~~   96 (358)
                      +...||.|.+.-+- +..-.-|  .|+.-....  ..|++||.+..+..+. -..+|+|||||+. +|..++++-. .+.
T Consensus       100 t~eIVALKr~kmek-ek~GFPItsLREIniLl~--~~H~NIV~vkEVVvG~~~d~iy~VMe~~Eh-DLksl~d~m~q~F~  175 (419)
T KOG0663|consen  100 TDEIVALKRLKMEK-EKEGFPITSLREINILLK--ARHPNIVEVKEVVVGSNMDKIYIVMEYVEH-DLKSLMETMKQPFL  175 (419)
T ss_pred             cceeEEeeeccccc-ccCCCcchhHHHHHHHHh--cCCCCeeeeEEEEeccccceeeeeHHHHHh-hHHHHHHhccCCCc
Confidence            34467777776543 1111222  233333333  5688999998886554 3679999999985 6777777644 677


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      ..+.+.++.|++.|+.|+|++.|+||    +|+|+++.|.+||+|||+|+..+..   ++..+-|.||+|||+++|.. |
T Consensus       176 ~~evK~L~~QlL~glk~lH~~wilHRDLK~SNLLm~~~G~lKiaDFGLAR~ygsp~k~~T~lVVTLWYRaPELLLG~~ty  255 (419)
T KOG0663|consen  176 PGEVKTLMLQLLRGLKHLHDNWILHRDLKTSNLLLSHKGILKIADFGLAREYGSPLKPYTPLVVTLWYRAPELLLGAKTY  255 (419)
T ss_pred             hHHHHHHHHHHHHHHHHHhhceeEecccchhheeeccCCcEEecccchhhhhcCCcccCcceEEEeeecCHHHhcCCccc
Confidence            88999999999999999999999999    9999999999999999999988766   78889999999999999976 9


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|+||+|||+.||+++++.|.|.+      +.+++..|++.+|.+.+.+|.+...-...       .... ....+.
T Consensus       256 st~iDMWSvGCI~aE~l~~kPlf~G~s------E~dQl~~If~llGtPte~iwpg~~~lp~~-------k~~~-f~~~py  321 (419)
T KOG0663|consen  256 STAVDMWSVGCIFAELLTQKPLFPGKS------EIDQLDKIFKLLGTPSEAIWPGYSELPAV-------KKMT-FSEHPY  321 (419)
T ss_pred             CcchhhhhHHHHHHHHHhcCCCCCCCc------hHHHHHHHHHHhCCCccccCCCccccchh-------hccc-cCCCCc
Confidence            999999999999999999999999888      89999999999999999888654322111       0000 000011


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCCCCCCCCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRET  312 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~~~~~~~~~~~  312 (358)
                       ......+.... .+....+|+..+|.+||.+|+||+|+|+|+||.+.|.+..|.+...-|...
T Consensus       322 -n~lr~kF~~~~-lse~g~~Lln~llt~dP~kR~tA~~~L~h~~F~e~P~p~~P~~~Pt~P~k~  383 (419)
T KOG0663|consen  322 -NNLRKKFGALS-LSEQGFDLLNKLLTYDPGKRITAEDGLKHEYFRETPLPIDPSMFPTWPAKS  383 (419)
T ss_pred             -hhhhhhccccc-cchhHHHHHHHHhccCccccccHHHhhcccccccCCCCCChhhcCCCcccc
Confidence             11111221111 567888999999999999999999999999999999888887766555433

>KOG0661 consensus MAPK related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-42  Score=311.40  Aligned_cols=258  Identities=24%  Similarity=0.284  Sum_probs=204.8

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      .+.|.-||||.+...+..-+..--.|+-|....+. .|++++.+.++.-..+..+|+|||||+-. |.+++. ....+++
T Consensus        32 ~~~~~~VAIK~MK~Kf~s~ee~~nLREvksL~kln-~hpniikL~Evi~d~~~~L~fVfE~Md~N-LYqLmK~R~r~fse  109 (538)
T KOG0661|consen   32 KETGELVAIKKMKKKFYSWEECMNLREVKSLRKLN-PHPNIIKLKEVIRDNDRILYFVFEFMDCN-LYQLMKDRNRLFSE  109 (538)
T ss_pred             cCCCceeeHHHHHhhhccHHHHHHHHHHHHHHhcC-CCCcchhhHHHhhccCceEeeeHHhhhhh-HHHHHhhcCCcCCH
Confidence            56666799999999887755555556666665542 47888888877766667999999999864 555554 5667899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCC-CCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~-~~~  170 (358)
                      ..+++++.|+++|+.++|.+|+.||    ||||+.....+||+|||+|+...  .+++.++.|+||+|||+|+... |+.
T Consensus       110 ~~irnim~QilqGL~hiHk~GfFHRDlKPENiLi~~~~~iKiaDFGLARev~SkpPYTeYVSTRWYRAPEvLLrs~~Ys~  189 (538)
T KOG0661|consen  110 SDIRNIMYQILQGLAHIHKHGFFHRDLKPENILISGNDVIKIADFGLAREVRSKPPYTEYVSTRWYRAPEVLLRSGYYSS  189 (538)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcccccCChhheEecccceeEecccccccccccCCCcchhhhcccccchHHhhhccccCC
Confidence            9999999999999999999999999    99999999999999999998764  5688999999999999999866 899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+|||++|+++-++.|.|.+      +.+++.+|.+++|++....|..+..          +.......+.....
T Consensus       190 pvD~wA~GcI~aEl~sLrPLFPG~s------E~Dqi~KIc~VLGtP~~~~~~eg~~----------La~~mnf~~P~~~~  253 (538)
T KOG0661|consen  190 PVDMWAVGCIMAELYSLRPLFPGAS------EIDQIYKICEVLGTPDKDSWPEGYN----------LASAMNFRFPQVKP  253 (538)
T ss_pred             chHHHHHHHHHHHHHHhcccCCCCc------HHHHHHHHHHHhCCCccccchhHHH----------HHHHhccCCCcCCC
Confidence            9999999999999999999999988      8999999999999998776654311          00000000000000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ..  ....-+..+.++.+||.+||.|||.+||||+|+|+||||+..
T Consensus       254 ~~--l~~L~p~~s~~~~~li~~ll~WDP~kRpTA~~al~~pffq~~  297 (538)
T KOG0661|consen  254 SP--LKDLLPNASSEAASLIERLLAWDPDKRPTASQALQHPFFQVG  297 (538)
T ss_pred             CC--hHHhCcccCHHHHHHHHHHhcCCCccCccHHHHhcCcccccc
Confidence            00  001122368899999999999999999999999999999864

>KOG0588 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=7e-43  Score=324.55  Aligned_cols=248  Identities=21%  Similarity=0.232  Sum_probs=208.9

Q ss_pred             CCCCCCccCCC-c--ccccccccCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcc
Q 045353            2 RKSGVPLILPT-K--TDKVVTESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSV   76 (358)
Q Consensus         2 ~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv   76 (358)
                      =|+|.-|-.-+ |  +..+-.++|.-+|||.....  +++.+-.++-|+.-.+.-  ..|+++.+++++... ...+|+|
T Consensus        14 wkLgkTLG~Gstg~vrlakh~~TGqlaaiKii~k~~~~s~s~~~~IerEIviMkL--i~HpnVl~LydVwe~-~~~lylv   90 (786)
T KOG0588|consen   14 WKLGKTLGKGSTGCVRLAKHAETGQLAAIKIIPKRSELSSSQPAGIEREIVIMKL--IEHPNVLRLYDVWEN-KQHLYLV   90 (786)
T ss_pred             eeccccccCCCCceehhhhcccccceeEEEeeccccccccccccchhhhhHHHHH--hcCCCeeeeeeeecc-CceEEEE
Confidence            34555444333 2  23334899999999998874  888888888888766543  578888888888765 4579999


Q ss_pred             cccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec--CCCCCC
Q 045353           77 DTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT--HKQFTN  150 (358)
Q Consensus        77 ~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~--~~~~~~  150 (358)
                      .||++||.|++++...+.+.+.+++.+|.|++.|+.|+|..+|+||    +|+||+..++|||+|||+|...  +..+.+
T Consensus        91 lEyv~gGELFdylv~kG~l~e~eaa~ff~QIi~gv~yCH~~~icHRDLKpENlLLd~~~nIKIADFGMAsLe~~gklLeT  170 (786)
T KOG0588|consen   91 LEYVPGGELFDYLVRKGPLPEREAAHFFRQILDGVSYCHAFNICHRDLKPENLLLDVKNNIKIADFGMASLEVPGKLLET  170 (786)
T ss_pred             EEecCCchhHHHHHhhCCCCCHHHHHHHHHHHHHHHHHhhhcceeccCCchhhhhhcccCEeeeccceeecccCCccccc
Confidence            9999999999999999999999999999999999999999999999    9999999999999999999654  344678


Q ss_pred             CccCCCcchhHHHhCCCC-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh
Q 045353          151 DIQTRQYRCPEVLLGSKY-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD  229 (358)
Q Consensus       151 ~~gt~~Y~aPE~l~~~~~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  229 (358)
                      .||+|.|.|||++.|.+| +.++||||+|||||.||+|..||++.+       ...+                       
T Consensus       171 SCGSPHYA~PEIV~G~pYdG~~sDVWSCGVILfALLtG~LPFdDdN-------ir~L-----------------------  220 (786)
T KOG0588|consen  171 SCGSPHYAAPEIVSGRPYDGRPSDVWSCGVILFALLTGKLPFDDDN-------IRVL-----------------------  220 (786)
T ss_pred             cCCCcccCCchhhcCCCCCCCccccchhHHHHHHHHhCCCCCCCcc-------HHHH-----------------------
Confidence            899999999999999998 889999999999999999999997433       1111                       


Q ss_pred             hhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          230 FFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                                        +.++..+.|.+|..++.++.+||++||.+||++|+|.+||++|||+......+
T Consensus       221 ------------------LlKV~~G~f~MPs~Is~eaQdLLr~ml~VDp~~RiT~~eI~kHP~l~g~~~~~  273 (786)
T KOG0588|consen  221 ------------------LLKVQRGVFEMPSNISSEAQDLLRRMLDVDPSTRITTEEILKHPFLSGYTSLP  273 (786)
T ss_pred             ------------------HHHHHcCcccCCCcCCHHHHHHHHHHhccCccccccHHHHhhCchhhcCCCCC
Confidence                              33455567888999999999999999999999999999999999998765444

>KOG0578 consensus p21-activated serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=6.2e-42  Score=314.16  Aligned_cols=225  Identities=20%  Similarity=0.241  Sum_probs=178.5

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++..||+|.+.  +..++++.+-...-..... ..|.++|...+..-.. .++|+|||||+||+|.|.+.. ..+++.+|
T Consensus       297 ~~~~VaiK~m~--l~~Q~~keLilnEi~Vm~~-~~H~NiVnfl~Sylv~-deLWVVMEym~ggsLTDvVt~-~~~~E~qI  371 (550)
T KOG0578|consen  297 TKQEVAIKRMD--LRKQPKKELLLNEILVMRD-LHHPNIVNFLDSYLVG-DELWVVMEYMEGGSLTDVVTK-TRMTEGQI  371 (550)
T ss_pred             CCceEEEEEEE--eccCCchhhhHHHHHHHHh-ccchHHHHHHHHhccc-ceeEEEEeecCCCchhhhhhc-ccccHHHH
Confidence            44557777764  5566666655444333333 4677777776665544 789999999999999997754 45999999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +.+++.+++|+.|+|..|||||    +|||++.+|.+||+|||+|.....   ...+.+|||+|||||++....|++++|
T Consensus       372 A~Icre~l~aL~fLH~~gIiHrDIKSDnILL~~~g~vKltDFGFcaqi~~~~~KR~TmVGTPYWMAPEVvtrk~YG~KVD  451 (550)
T KOG0578|consen  372 AAICREILQGLKFLHARGIIHRDIKSDNILLTMDGSVKLTDFGFCAQISEEQSKRSTMVGTPYWMAPEVVTRKPYGPKVD  451 (550)
T ss_pred             HHHHHHHHHHHHHHHhcceeeeccccceeEeccCCcEEEeeeeeeeccccccCccccccCCCCccchhhhhhcccCcccc
Confidence            9999999999999999999999    999999999999999999977653   356679999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++++||+.|.+||-..+      ....+..|. .-|.+                                     
T Consensus       452 IWSLGIMaIEMveGEPPYlnE~------PlrAlyLIa-~ng~P-------------------------------------  487 (550)
T KOG0578|consen  452 IWSLGIMAIEMVEGEPPYLNEN------PLRALYLIA-TNGTP-------------------------------------  487 (550)
T ss_pred             chhhhhHHHHHhcCCCCccCCC------hHHHHHHHh-hcCCC-------------------------------------
Confidence            9999999999999999996322      222222221 11211                                     


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                       ....+..+++.+++||.+||+.|+.+|++|.|+|+||||+-
T Consensus       488 -~lk~~~klS~~~kdFL~~cL~~dv~~RasA~eLL~HpFl~~  528 (550)
T KOG0578|consen  488 -KLKNPEKLSPELKDFLDRCLVVDVEQRASAKELLEHPFLKM  528 (550)
T ss_pred             -CcCCccccCHHHHHHHHHHhhcchhcCCCHHHHhcChhhhh
Confidence             22345667999999999999999999999999999999953

>KOG0592 consensus 3-phosphoinositide-dependent protein kinase (PDK1) [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-41  Score=310.10  Aligned_cols=228  Identities=20%  Similarity=0.234  Sum_probs=192.9

Q ss_pred             cccCcccccccccCcc-chhhhHHh-hHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKV-KKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+++...|+|+|.... .+.+|.++ .+++....++ .+|+.++.++..... +..+|.|+||+++|+|.+++..-+.++
T Consensus        95 ~~t~keYAiKVl~K~~Iike~KvkYV~~Ek~~l~~L-~~hPgivkLy~TFQD-~~sLYFvLe~A~nGdll~~i~K~Gsfd  172 (604)
T KOG0592|consen   95 KATGKEYAIKVLDKRYIIKEKKVKYVTREKEALTQL-SGHPGIVKLYFTFQD-EESLYFVLEYAPNGDLLDLIKKYGSFD  172 (604)
T ss_pred             cCCCceeeHhhhhHHHHHhhcccchhhHHHHHHHHh-hCCCCeEEEEEEeec-ccceEEEEEecCCCcHHHHHHHhCcch
Confidence            4466778999998854 45555444 4554444554 488888888776654 457899999999999999999999999


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----------------CCCCccCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----------------FTNDIQTRQ  156 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----------------~~~~~gt~~  156 (358)
                      +...+.+..+|+.++.|+|+.|||||    +||||+.++++||+|||.|+.+...                ..+.+||..
T Consensus       173 e~caR~YAAeIldAleylH~~GIIHRDlKPENILLd~dmhikITDFGsAK~l~~~~~~~~~~~~~~~a~s~~~SFVGTAe  252 (604)
T KOG0592|consen  173 ETCARFYAAEILDALEYLHSNGIIHRDLKPENILLDKDGHIKITDFGSAKILSPSQKSQENPVDPNQASSRRSSFVGTAE  252 (604)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCceeccCChhheeEcCCCcEEEeeccccccCChhhccccCccCcccccCcccceeeeec
Confidence            99999999999999999999999999    9999999999999999999765321                134699999


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      |.+||+|.....++.+|||+||||+|+|+.|.+||.+.+      +...                               
T Consensus       253 YVSPElL~~~~~~~~sDiWAlGCilyQmlaG~PPFra~N------eyli-------------------------------  295 (604)
T KOG0592|consen  253 YVSPELLNDSPAGPSSDLWALGCILYQMLAGQPPFRAAN------EYLI-------------------------------  295 (604)
T ss_pred             ccCHHHhcCCCCCcccchHHHHHHHHHHhcCCCCCcccc------HHHH-------------------------------
Confidence            999999999999999999999999999999999998765      2222                               


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                 ++++....+.+++.+++.+.+||.++|..||.+|+|+.||.+||||.+-
T Consensus       296 -----------FqkI~~l~y~fp~~fp~~a~dLv~KLLv~dp~~Rlt~~qIk~HpFF~~V  344 (604)
T KOG0592|consen  296 -----------FQKIQALDYEFPEGFPEDARDLIKKLLVRDPSDRLTSQQIKAHPFFEGV  344 (604)
T ss_pred             -----------HHHHHHhcccCCCCCCHHHHHHHHHHHccCccccccHHHHhhCcccccC
Confidence                       3344455778899999999999999999999999999999999999874

>KOG0659 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, kinase subunit CDK7 [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair]

Probab=100.00  E-value=7.5e-41  Score=280.38  Aligned_cols=261  Identities=24%  Similarity=0.298  Sum_probs=203.6

Q ss_pred             cccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           19 TESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .++|..||||-..-+ ..++-....-|+.|-....  .|.+++.+.+... ..+.+.||.||++- +|...+. +...+.
T Consensus        24 ~~t~~~VAIKKIkl~~~kdGi~~talREIK~Lqel--~h~nIi~LiD~F~-~~~~l~lVfEfm~t-dLe~vIkd~~i~l~   99 (318)
T KOG0659|consen   24 TETGKRVAIKKIKLGNAKDGINRTALREIKLLQEL--KHPNIIELIDVFP-HKSNLSLVFEFMPT-DLEVVIKDKNIILS   99 (318)
T ss_pred             cCCCcEEEEEEeeccccccCccHHHHHHHHHHHHc--cCcchhhhhhhcc-CCCceEEEEEeccc-cHHHHhcccccccC
Confidence            567788888766543 3333445556777776663  5777777665544 34578899999985 6666666 456788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      ..++..++.+++.|+.|+|.+.|+||    .|+|++++|.+||+|||+|+.....   .+..+-|+||+|||+++|.. |
T Consensus       100 pa~iK~y~~m~LkGl~y~H~~~IlHRDlKPnNLLis~~g~lKiADFGLAr~f~~p~~~~~~~V~TRWYRAPELLfGsr~Y  179 (318)
T KOG0659|consen  100 PADIKSYMLMTLKGLAYCHSKWILHRDLKPNNLLISSDGQLKIADFGLARFFGSPNRIQTHQVVTRWYRAPELLFGSRQY  179 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhcccCCccceEEcCCCcEEeecccchhccCCCCcccccceeeeeccChHHhccchhc
Confidence            89999999999999999999999999    8999999999999999999887643   44558899999999999976 9


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +..+||||+|||+.||+.|.+.|.|.+      +.+|+..|++.+|++.++.|........|..          ..+.|.
T Consensus       180 g~~VDmWavGCI~AELllr~P~fpG~s------DidQL~~If~~LGTP~~~~WP~~~~lpdY~~----------~~~~P~  243 (318)
T KOG0659|consen  180 GTGVDMWAVGCIFAELLLRVPFFPGDS------DIDQLSKIFRALGTPTPDQWPEMTSLPDYVK----------IQQFPK  243 (318)
T ss_pred             CCcchhhhHHHHHHHHHccCCCCCCCc------hHHHHHHHHHHcCCCCcccCccccccccHHH----------HhcCCC
Confidence            999999999999999999999999887      8999999999999998877765443322211          111110


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS  303 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~~  303 (358)
                      ...   . ...+..+.++.||+.+||.+||.+|+|+.|+|+|+||++.|.+..+.
T Consensus       244 ~~~---~-~lf~aas~d~ldLl~~m~~ynP~~Rita~qaL~~~yf~~~P~pt~~~  294 (318)
T KOG0659|consen  244 PPL---N-NLFPAASSDALDLLSKMLTYNPKKRITASQALKHPYFKSLPLPTPPS  294 (318)
T ss_pred             Ccc---c-cccccccHHHHHHHHhhhccCchhcccHHHHhcchhhhcCCCCCChh
Confidence            000   0 12334567779999999999999999999999999999876655554

>KOG0598 consensus Ribosomal protein S6 kinase and related proteins [General function prediction only; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-41  Score=295.61  Aligned_cols=226  Identities=18%  Similarity=0.162  Sum_probs=185.1

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..-|.|+|...-.-..  .+..+.++.....  ..|+.+|.+....++ ...+|+|+||++||+|+..+.+++.+.+
T Consensus        48 dt~kiYAmKvl~K~~iv~~~e~~~~~~Er~IL~~--v~hPFiv~l~ysFQt-~~kLylVld~~~GGeLf~hL~~eg~F~E  124 (357)
T KOG0598|consen   48 DTGKIYAMKVLKKKKIVEKKEVRHTKAERNILSK--IKHPFIVKLIYSFQT-EEKLYLVLDYLNGGELFYHLQREGRFSE  124 (357)
T ss_pred             ccCceeehhhhhhhHhhhhhhHHHHHHHHHHHHh--CCCCcEeeeEEeccc-CCeEEEEEeccCCccHHHHHHhcCCcch
Confidence            5677778899887544333  3445555555555  688899988877665 4589999999999999999999999999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.++..|+.|+.|+|+.+||||    +||||+.+|+++|+|||+|+..   +....+.|||+.|||||++.+.+|+.
T Consensus       125 ~~arfYlaEi~lAL~~LH~~gIiyRDlKPENILLd~~GHi~LtDFgL~k~~~~~~~~t~tfcGT~eYmAPEil~~~gy~~  204 (357)
T KOG0598|consen  125 DRARFYLAEIVLALGYLHSKGIIYRDLKPENILLDEQGHIKLTDFGLCKEDLKDGDATRTFCGTPEYMAPEILLGKGYDK  204 (357)
T ss_pred             hHHHHHHHHHHHHHHHHHhCCeeeccCCHHHeeecCCCcEEEeccccchhcccCCCccccccCCccccChHHHhcCCCCc
Confidence            9999999999999999999999999    9999999999999999999753   23345569999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|+|||||++|+|++|.+||.+.+.      ......|                                         
T Consensus       205 ~vDWWsLGillYeML~G~pPF~~~~~------~~~~~~I-----------------------------------------  237 (357)
T KOG0598|consen  205 AVDWWSLGILLYEMLTGKPPFYAEDV------KKMYDKI-----------------------------------------  237 (357)
T ss_pred             ccchHhHHHHHHHHhhCCCCCcCccH------HHHHHHH-----------------------------------------
Confidence            99999999999999999999976551      2222222                                         


Q ss_pred             hHHhhhc-CChhhHHHHHHHHHhccccCCCCCC----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYD-FNERDAKDMADFLVPILDFVPEKRP----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~R~----ta~elL~hpwf~~~  296 (358)
                       ...+.. .+...+.++++||.++|..||++|.    .+.++-+||||..-
T Consensus       238 -~~~k~~~~p~~ls~~ardll~~LL~rdp~~RLg~~~d~~~ik~HpfF~~i  287 (357)
T KOG0598|consen  238 -LKGKLPLPPGYLSEEARDLLKKLLKRDPRQRLGGPGDAEEIKRHPFFKGI  287 (357)
T ss_pred             -hcCcCCCCCccCCHHHHHHHHHHhccCHHHhcCCCCChHHhhcCcccccC
Confidence             112212 2333688999999999999999996    68999999999874

>KOG0593 consensus Predicted protein kinase KKIAMRE [General function prediction only]

Probab=100.00  E-value=4.5e-41  Score=286.49  Aligned_cols=257  Identities=21%  Similarity=0.247  Sum_probs=201.2

Q ss_pred             cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      -++|..||||..-..-. +.-||---|+.+...|  +.|+++|.+..+... ...+++|.|||+..-|.++-...-..+.
T Consensus        24 k~TgqIVAIKkF~Esedd~~VkKIAlREIrmLKq--LkH~NLVnLiEVFrr-krklhLVFE~~dhTvL~eLe~~p~G~~~  100 (396)
T KOG0593|consen   24 KDTGQIVAIKKFVESEDDPVVKKIALREIRMLKQ--LKHENLVNLIEVFRR-KRKLHLVFEYCDHTVLHELERYPNGVPS  100 (396)
T ss_pred             CCcccEEEEEeeccCCccHHHHHHHHHHHHHHHh--cccchHHHHHHHHHh-cceeEEEeeecchHHHHHHHhccCCCCH
Confidence            46788899886554433 4445555677777777  567777777665443 5689999999999999888777777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhC-CCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLG-SKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~-~~~~  169 (358)
                      ..+..++.|++.++.|+|.+++|||    +|||++.+|.+||||||+|+...   ..++.++.|+||+|||++.| ..|+
T Consensus       101 ~~vk~~l~Q~l~ai~~cHk~n~IHRDIKPENILit~~gvvKLCDFGFAR~L~~pgd~YTDYVATRWYRaPELLvGDtqYG  180 (396)
T KOG0593|consen  101 ELVKKYLYQLLKAIHFCHKNNCIHRDIKPENILITQNGVVKLCDFGFARTLSAPGDNYTDYVATRWYRAPELLVGDTQYG  180 (396)
T ss_pred             HHHHHHHHHHHHHhhhhhhcCeecccCChhheEEecCCcEEeccchhhHhhcCCcchhhhhhhhhhccChhhhcccCcCC
Confidence            9999999999999999999999999    99999999999999999998765   34677899999999999999 5699


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++.||++|.+.|.|.+      +.+++..|...+|.+++.-..-       |..++.+..+.-... .-.
T Consensus       181 ~pVDiWAiGCv~aEl~~G~pL~PG~S------DiDQLy~I~ktLG~L~prhq~i-------F~~N~~F~Gv~lP~~-~~~  246 (396)
T KOG0593|consen  181 KPVDIWAIGCVFAELLTGEPLWPGRS------DIDQLYLIRKTLGNLIPRHQSI-------FSSNPFFHGVRLPEP-EHP  246 (396)
T ss_pred             CcccchhhhHHHHHHhcCCcCCCCcc------hHHHHHHHHHHHcccCHHHHHH-------hccCCceeeeecCCC-CCc
Confidence            99999999999999999999999888      8999999999999877654322       222221111110000 000


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ....   .-.+..+..+.||+.+||..||.+|++.+|+|.||||.+
T Consensus       247 epLe---~k~p~~s~~~ld~~k~cL~~dP~~R~sc~qll~H~yFd~  289 (396)
T KOG0593|consen  247 EPLE---RKYPKISNVLLDLLKKCLKMDPDDRLSCEQLLHHPYFDG  289 (396)
T ss_pred             cchh---hhcccchHHHHHHHHHHhcCCccccccHHHHhcChHHHH
Confidence            0111   112344668899999999999999999999999999954

>KOG0583 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-40  Score=307.43  Aligned_cols=227  Identities=17%  Similarity=0.202  Sum_probs=189.7

Q ss_pred             cccCcccccccccCccc----hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           19 TESSASKENKSLYGDLT----KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      ..+|..||+|+......    ..-.+.++|+....... ..|++|+++.....+... +|+|||||.||+|++++.....
T Consensus        39 ~~t~~~vAiKii~~~~~~~~~~~~~~~i~rEi~~~~~~-~~HpnI~~l~ev~~t~~~-~~ivmEy~~gGdL~~~i~~~g~  116 (370)
T KOG0583|consen   39 RLTGEKVAIKIIDRKKVSSKSQKLDELIKREISILRRL-RSHPNIIRLLEVFATPTK-IYIVMEYCSGGDLFDYIVNKGR  116 (370)
T ss_pred             ccCCCeEEEEEechhcccccccccchhhHHHHHHHHHh-ccCCCEeEEEEEEecCCe-EEEEEEecCCccHHHHHHHcCC
Confidence            44668899997776422    23455666776555543 357799999998887766 9999999999999999999899


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +.+..++.+++|+++|+.|+|..|++||    +|||++.+ +++||+|||+|...   .....+.|||+.|+|||++.+.
T Consensus       117 l~E~~ar~~F~Qlisav~y~H~~gi~HRDLK~ENilld~~~~~~Kl~DFG~s~~~~~~~~~l~t~cGsp~Y~aPEvl~~~  196 (370)
T KOG0583|consen  117 LKEDEARKYFRQLISAVAYCHSRGIVHRDLKPENILLDGNEGNLKLSDFGLSAISPGEDGLLKTFCGSPAYAAPEVLSGK  196 (370)
T ss_pred             CChHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEecCCCCCEEEeccccccccCCCCCcccCCCCCcccCCHHHhCCC
Confidence            9999999999999999999999999999    99999999 99999999999877   3457788999999999999998


Q ss_pred             C-C-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          167 K-Y-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       167 ~-~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      . | +.++||||+||+||.|++|+.||...+      ....                                       
T Consensus       197 ~~Y~g~~aDvWS~GViLy~ml~G~~PF~d~~------~~~l---------------------------------------  231 (370)
T KOG0583|consen  197 GTYSGKAADVWSLGVILYVLLCGRLPFDDSN------VPNL---------------------------------------  231 (370)
T ss_pred             CCcCCchhhhhhhHHHHHHHHhCCCCCCCcc------HHHH---------------------------------------
Confidence            8 8 588999999999999999999997422      1111                                       


Q ss_pred             CCcchhhHHhhhcCChhh-HHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERD-AKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~-~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                         ..++....+.++..+ ++++.+|+.+||..||.+|+|+.+++.||||+.
T Consensus       232 ---~~ki~~~~~~~p~~~~S~~~~~Li~~mL~~~P~~R~t~~~i~~h~w~~~  280 (370)
T KOG0583|consen  232 ---YRKIRKGEFKIPSYLLSPEARSLIEKMLVPDPSTRITLLEILEHPWFQK  280 (370)
T ss_pred             ---HHHHhcCCccCCCCcCCHHHHHHHHHHcCCCcccCCCHHHHhhChhhcc
Confidence               111233345667777 899999999999999999999999999999997

>KOG0604 consensus MAP kinase-activated protein kinase 2 [Signal transduction mechanisms]

Probab=100.00  E-value=2.7e-39  Score=275.23  Aligned_cols=237  Identities=22%  Similarity=0.286  Sum_probs=179.3

Q ss_pred             cCCCcccccc---CCCCCCCCCCCcccccCCCCCcccccccccc--cChhhhhHHHHhhhhccccccCCCCCCc----cc
Q 045353           54 AGTEAFDESE---ADSKPSSPDNFSVDTIPNGVSVEERQNDSVV--NNESSRDNEVKNTSQGVKGHRRPSRATR----KN  124 (358)
Q Consensus        54 ~~~~~~~~~~---~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~N  124 (358)
                      .+++++|...   .+....-..+.||||+|+||+|++++...+.  +++.++..++++|..++.|+|+.+|.||    +|
T Consensus       112 s~h~~iV~IidVyeNs~~~rkcLLiVmE~meGGeLfsriq~~g~~afTErea~eI~~qI~~Av~~lH~~nIAHRDlKpEN  191 (400)
T KOG0604|consen  112 SGHPHIVSIIDVYENSYQGRKCLLIVMECMEGGELFSRIQDRGDQAFTEREASEIMKQIGLAVRYLHSMNIAHRDLKPEN  191 (400)
T ss_pred             cCCCceEEeehhhhhhccCceeeEeeeecccchHHHHHHHHcccccchHHHHHHHHHHHHHHHHHHHhcchhhccCChhh
Confidence            4455555444   4444456788999999999999999997665  8999999999999999999999999999    99


Q ss_pred             ccccC---CCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC
Q 045353          125 LLAAV---DVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNY  199 (358)
Q Consensus       125 ILl~~---~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~  199 (358)
                      +|...   +..+||+|||+|+...  ..+.+.|.||+|.|||++....|+..+|+||+||++|.|++|.+||++..+...
T Consensus       192 LLyt~t~~na~lKLtDfGFAK~t~~~~~L~TPc~TPyYvaPevlg~eKydkscdmwSlgVimYIlLCGyPPFYS~hg~ai  271 (400)
T KOG0604|consen  192 LLYTTTSPNAPLKLTDFGFAKETQEPGDLMTPCFTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI  271 (400)
T ss_pred             eeeecCCCCcceEecccccccccCCCccccCCcccccccCHHHhCchhcCCCCCccchhHHHHHhhcCCCcccccCCccC
Confidence            99864   4678999999998765  557788999999999999999999999999999999999999999987654322


Q ss_pred             CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCC----hhhHHHHHHHHHhccc
Q 045353          200 DKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFN----ERDAKDMADFLVPILD  275 (358)
Q Consensus       200 ~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~  275 (358)
                      .  -..-                                          .++..+.|.||    ..+|++++|+|+.+|.
T Consensus       272 s--pgMk------------------------------------------~rI~~gqy~FP~pEWs~VSe~aKdlIR~LLk  307 (400)
T KOG0604|consen  272 S--PGMK------------------------------------------RRIRTGQYEFPEPEWSCVSEAAKDLIRKLLK  307 (400)
T ss_pred             C--hhHH------------------------------------------hHhhccCccCCChhHhHHHHHHHHHHHHHhc
Confidence            1  1111                                          12222333333    3568999999999999


Q ss_pred             cCCCCCCCHHHHhcCcCcCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCCccccc
Q 045353          276 FVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAIN  340 (358)
Q Consensus       276 ~dP~~R~ta~elL~hpwf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (358)
                      .+|++|.|+.+++.|||++.....+....      .......+.++.+.+.++++......+.++
T Consensus       308 t~PteRlTI~~~m~hpwi~~~~~vp~tpl------~t~~~l~~a~e~w~dvqeem~~~lA~mrv~  366 (400)
T KOG0604|consen  308 TEPTERLTIEEVMDHPWINQYEAVPQTPL------STSRMLKEAVEAWDDVQEEMTETLATMRVD  366 (400)
T ss_pred             CCchhheeHHHhhcCchhcccccCCCCCc------hhhhhcchhhhhhHHHHHHHHHHHHhcccC
Confidence            99999999999999999998654332221      122222233333555555555555555544

>KOG0616 consensus cAMP-dependent protein kinase catalytic subunit (PKA) [Signal transduction mechanisms]

Probab=100.00  E-value=1.3e-39  Score=276.80  Aligned_cols=228  Identities=18%  Similarity=0.183  Sum_probs=184.7

Q ss_pred             cccCcccccccccCccchhhhHHhhH-HHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKK-KAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|+--|.|+|...-.=..|.-..- ..|+.-+. ..++.++.+..... ....+|+||||++||.|+.++.....+++
T Consensus        66 k~~g~yYAmKvL~k~~vVklKQveH~~nEk~vL~~-v~~PFlv~l~~t~~-d~~~lymvmeyv~GGElFS~Lrk~~rF~e  143 (355)
T KOG0616|consen   66 KHSGNYYAMKVLDKQKVVKLKQVEHTHNEKRVLKA-VSHPFLVKLYGTFK-DNSNLYMVMEYVPGGELFSYLRKSGRFSE  143 (355)
T ss_pred             ccCCceeehhhcCHHHHHHHHHHHHHhhHHHHHhh-ccCceeEEEEEeec-cCCeEEEEEeccCCccHHHHHHhcCCCCc
Confidence            34566678888865322222211111 11222222 34566666654433 45689999999999999999999999999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.+..+++.++.|+|..+++.|    +|||+|.+|.+||+|||+|+.......+.||||.|+|||++...+|+.++|
T Consensus       144 ~~arFYAAeivlAleylH~~~iiYRDLKPENiLlD~~G~iKitDFGFAK~v~~rT~TlCGTPeYLAPEii~sk~ynkavD  223 (355)
T KOG0616|consen  144 PHARFYAAEIVLALEYLHSLDIIYRDLKPENLLLDQNGHIKITDFGFAKRVSGRTWTLCGTPEYLAPEIIQSKGYNKAVD  223 (355)
T ss_pred             hhHHHHHHHHHHHHHHHHhcCeeeccCChHHeeeccCCcEEEEeccceEEecCcEEEecCCccccChHHhhcCCCCcchh
Confidence            9999999999999999999999977    999999999999999999999988888889999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      +|||||++|||+.|.+||...+.      ...                                          ..++..
T Consensus       224 WWalGVLIYEMlaG~pPF~~~~~------~~i------------------------------------------Y~KI~~  255 (355)
T KOG0616|consen  224 WWALGVLIYEMLAGYPPFYDDNP------IQI------------------------------------------YEKILE  255 (355)
T ss_pred             HHHHHHHHHHHHcCCCCCcCCCh------HHH------------------------------------------HHHHHh
Confidence            99999999999999999976541      111                                          345566


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                      ..+.+|.-++.++++||.++|+.|-.+|.     ...++..||||++-
T Consensus       256 ~~v~fP~~fs~~~kdLl~~LL~vD~t~R~gnlknG~~dIk~H~wF~~v  303 (355)
T KOG0616|consen  256 GKVKFPSYFSSDAKDLLKKLLQVDLTKRFGNLKNGVEDIKNHPWFKGV  303 (355)
T ss_pred             CcccCCcccCHHHHHHHHHHHhhhhHhhhcCcCCCccccccCcccccc
Confidence            67788999999999999999999999994     56789999999974

>KOG0033 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=4.5e-39  Score=266.83  Aligned_cols=230  Identities=19%  Similarity=0.236  Sum_probs=182.1

Q ss_pred             cccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|..-|.|+.+- .+++..-.++.|+++.-..  +.|++|+++.+... +++..|+|.|++.||+|+.-+.....+++
T Consensus        33 ~~tg~~fa~kiin~~k~~~~~~e~l~rEarIC~~--LqHP~IvrL~~ti~-~~~~~ylvFe~m~G~dl~~eIV~R~~ySE  109 (355)
T KOG0033|consen   33 KTTGLEFAAKIINTKKLSARDFQKLEREARICRK--LQHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVAREFYSE  109 (355)
T ss_pred             ccchHHHHHHHhhhhhhccccHHHHHHHHHHHHh--cCCCcEeehhhhhc-ccceeEEEEecccchHHHHHHHHHHHHHH
Confidence            44566666666654 4555555666666665554  57889999877654 46788999999999999998887788999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ..+..+++|+++++.|+|+++|+||    +|+|+.+.   .-+||+|||+|...+..  ....+|||.|||||++...+|
T Consensus       110 a~aSH~~rQiLeal~yCH~n~IvHRDvkP~nllLASK~~~A~vKL~~FGvAi~l~~g~~~~G~~GtP~fmaPEvvrkdpy  189 (355)
T KOG0033|consen  110 ADASHCIQQILEALAYCHSNGIVHRDLKPENLLLASKAKGAAVKLADFGLAIEVNDGEAWHGFAGTPGYLSPEVLKKDPY  189 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCceeccCChhheeeeeccCCCceeecccceEEEeCCccccccccCCCcccCHHHhhcCCC
Confidence            9999999999999999999999999    89999654   45899999999876633  345689999999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH-HhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME-LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +..+|||+.|||||-++.|.+||.+.+      .......|+. .+..++                              
T Consensus       190 ~kpvDiW~cGViLfiLL~G~~PF~~~~------~~rlye~I~~g~yd~~~------------------------------  233 (355)
T KOG0033|consen  190 SKPVDIWACGVILYILLVGYPPFWDED------QHRLYEQIKAGAYDYPS------------------------------  233 (355)
T ss_pred             CCcchhhhhhHHHHHHHhCCCCCCCcc------HHHHHHHHhccccCCCC------------------------------
Confidence            999999999999999999999998644      1222222211 011111                              


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                               +.++.+++++++|+++||..||.+|+|+.|+|+|||+...
T Consensus       234 ---------~~w~~is~~Ak~LvrrML~~dP~kRIta~EAL~HpWi~~r  273 (355)
T KOG0033|consen  234 ---------PEWDTVTPEAKSLIRRMLTVNPKKRITADEALKHPWICNR  273 (355)
T ss_pred             ---------cccCcCCHHHHHHHHHHhccChhhhccHHHHhCCchhcch
Confidence                     1234568899999999999999999999999999999863

>KOG0605 consensus NDR and related serine/threonine kinases [General function prediction only]

Probab=100.00  E-value=2e-38  Score=289.09  Aligned_cols=230  Identities=20%  Similarity=0.238  Sum_probs=183.4

Q ss_pred             cccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      -.+|.-.|.|.|....  ..+|-+.++.++...+.  ...+.+|.++..... ...+|+||||++||++..+|-....+.
T Consensus       163 k~Tg~iyAmK~LkKS~M~~~~Qv~hV~aERdiL~~--~ds~~vVKLyYsFQD-~~~LYLiMEylPGGD~mTLL~~~~~L~  239 (550)
T KOG0605|consen  163 KDTGEIYAMKILKKSEMLKKNQVEHVRAERDILAE--VDSPWVVKLYYSFQD-KEYLYLIMEYLPGGDMMTLLMRKDTLT  239 (550)
T ss_pred             ccCCcEEeeecccHHHHHhhhhHHHHHHHHHHhhh--cCCCcEEEEEEEecC-CCeeEEEEEecCCccHHHHHHhcCcCc
Confidence            3467777999998753  34455566666655555  456677777666554 558999999999999999999999999


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-------------------------C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------------------------Q  147 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------------------------~  147 (358)
                      +..++.++.+++-++..+|..|+|||    +|+|||..|++||+|||+|.....                         .
T Consensus       240 e~~arfYiaE~vlAI~~iH~~gyIHRDIKPdNlLiD~~GHiKLSDFGLs~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (550)
T KOG0605|consen  240 EDWARFYIAETVLAIESIHQLGYIHRDIKPDNLLIDAKGHIKLSDFGLSTGLDKKHRIESYRLDEQMQINLSEAKPSDFP  319 (550)
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCcccccCChhheeecCCCCEeeccccccchhhhhhhhhhhcchhhhhhhhccCCCcccc
Confidence            99999999999999999999999999    999999999999999999932100                         0


Q ss_pred             -------------------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCc
Q 045353          148 -------------------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKD  202 (358)
Q Consensus       148 -------------------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~  202 (358)
                                               ..+.+|||-|+|||++.+.+|+..+|+|||||||||||.|.+||.+.+      .
T Consensus       320 ~~~~~~~~~~~~~~~~~w~~nrr~~a~StVGTPDYiAPEVll~kgY~~~cDwWSLG~ImyEmLvGyPPF~s~t------p  393 (550)
T KOG0605|consen  320 KFNTPRSTMSRREQLQTWKRNRRQLAYSTVGTPDYIAPEVLLGKGYGKECDWWSLGCIMYEMLVGYPPFCSET------P  393 (550)
T ss_pred             ccccccchhhHHHHHHHHHhhhhhhhhcccCCccccchHHHhcCCCCccccHHHHHHHHHHHHhCCCCCCCCC------H
Confidence                                     012489999999999999999999999999999999999999998776      4


Q ss_pred             HHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC
Q 045353          203 EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP  282 (358)
Q Consensus       203 ~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  282 (358)
                      .+....|...--.+                                      .++.....+.++.|||.+||. ||++|.
T Consensus       394 ~~T~rkI~nwr~~l--------------------------------------~fP~~~~~s~eA~DLI~rll~-d~~~RL  434 (550)
T KOG0605|consen  394 QETYRKIVNWRETL--------------------------------------KFPEEVDLSDEAKDLITRLLC-DPENRL  434 (550)
T ss_pred             HHHHHHHHHHhhhc--------------------------------------cCCCcCcccHHHHHHHHHHhc-CHHHhc
Confidence            45555544322110                                      111223346899999999999 999998


Q ss_pred             C---HHHHhcCcCcCCC
Q 045353          283 T---AAQCLSHPWMSAG  296 (358)
Q Consensus       283 t---a~elL~hpwf~~~  296 (358)
                      .   ++||.+||||++-
T Consensus       435 G~~G~~EIK~HPfF~~v  451 (550)
T KOG0605|consen  435 GSKGAEEIKKHPFFKGV  451 (550)
T ss_pred             CcccHHHHhcCCccccC
Confidence            5   8999999999974

>KOG0595 consensus Serine/threonine-protein kinase involved in autophagy [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-38  Score=281.64  Aligned_cols=231  Identities=18%  Similarity=0.232  Sum_probs=188.3

Q ss_pred             cccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++|..||||....+ +.+....-+-.+.+....  ..|+++|.+.+....++ .+|+|||||+||+|.+++.....+++
T Consensus        32 ~~~~~~VAIK~i~~~~l~~k~~e~L~~Ei~iLke--l~H~nIV~l~d~~~~~~-~i~lVMEyC~gGDLs~yi~~~~~l~e  108 (429)
T KOG0595|consen   32 KKSGTEVAIKCIAKKKLNKKLVELLLSEIKILKE--LKHPNIVRLLDCIEDDD-FIYLVMEYCNGGDLSDYIRRRGRLPE  108 (429)
T ss_pred             ccCCceEEeeeehhhccCHHHHHHHHHHHHHHHh--cCCcceeeEEEEEecCC-eEEEEEEeCCCCCHHHHHHHcCCCCH
Confidence            567789999998876 465566666677777766  35889999887766544 89999999999999999999999999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCC------CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD------VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~------~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..++.++.|+..|+.++|+++||||    +||||+..      -.+||+|||+|+.....  ..+.||+|.|||||++..
T Consensus       109 ~t~r~Fm~QLA~alq~L~~~~IiHRDLKPQNiLLs~~~~~~~~~~LKIADFGfAR~L~~~~~a~tlcGSplYMAPEV~~~  188 (429)
T KOG0595|consen  109 ATARHFMQQLASALQFLHENNIIHRDLKPQNILLSTTARNDTSPVLKIADFGFARFLQPGSMAETLCGSPLYMAPEVIMS  188 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCCcceEEeccCCCCCCCceEEecccchhhhCCchhHHHHhhCCccccCHHHHHh
Confidence            9999999999999999999999999    99999865      56899999999987754  456699999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..|+.++|+||+|+|+|+|++|++||...+      ..+.+..+.+--..                              
T Consensus       189 ~~YdAKADLWSiG~Ilyq~l~g~~Pf~a~t------~~eL~~~~~k~~~~------------------------------  232 (429)
T KOG0595|consen  189 QQYDAKADLWSIGTILYQCLTGKPPFDAET------PKELLLYIKKGNEI------------------------------  232 (429)
T ss_pred             ccccchhhHHHHHHHHHHHHhCCCCccccC------HHHHHHHHhccccc------------------------------
Confidence            999999999999999999999999997554      22222211110000                              


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                               ....+...+..+.+|+...|..+|..|.+..+-+.|+++...+
T Consensus       233 ---------~~~~~~~~s~~~~~Ll~~ll~~~~~~~~~~~~~~~~~~l~~~p  275 (429)
T KOG0595|consen  233 ---------VPVLPAELSNPLRELLISLLQRNPKDRISFEDFFDHPFLAANP  275 (429)
T ss_pred             ---------cCchhhhccCchhhhhhHHHhcCccccCchHHhhhhhhcccCc
Confidence                     0112334466777999999999999999999999999998765

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-38  Score=296.39  Aligned_cols=222  Identities=17%  Similarity=0.178  Sum_probs=180.1

Q ss_pred             ccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           24 SKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      --|||+|..+-.-+  .-...+.+++..... ..|+.++.++.-..+.+ .+|.||||++||++.+ +.....+++..++
T Consensus       395 ~yAIK~LKK~~Il~~d~Ve~~~~EkrI~~la-~~HPFL~~L~~~fQT~~-~l~fvmey~~Ggdm~~-~~~~~~F~e~rar  471 (694)
T KOG0694|consen  395 YYAIKVLKKGDILQRDEVESLMCEKRIFELA-NRHPFLVNLFSCFQTKE-HLFFVMEYVAGGDLMH-HIHTDVFSEPRAR  471 (694)
T ss_pred             EEEEEEeeccceeccccHHHHHHHHHHHHHh-ccCCeEeecccccccCC-eEEEEEEecCCCcEEE-EEecccccHHHHH
Confidence            44899998854433  223333333333332 37888888888777654 6788999999999554 4455779999999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      .+.+.++.|+.|+|++|||+|    +|||||.+|++||+|||+++..   +...++.||||.|||||++.+..|+.++|+
T Consensus       472 fyaAev~l~L~fLH~~~IIYRDlKLdNiLLD~eGh~kiADFGlcKe~m~~g~~TsTfCGTpey~aPEil~e~~Yt~aVDW  551 (694)
T KOG0694|consen  472 FYAAEVVLGLQFLHENGIIYRDLKLDNLLLDTEGHVKIADFGLCKEGMGQGDRTSTFCGTPEFLAPEVLTEQSYTRAVDW  551 (694)
T ss_pred             HHHHHHHHHHHHHHhcCceeeecchhheEEcccCcEEecccccccccCCCCCccccccCChhhcChhhhccCcccchhhH
Confidence            999999999999999999999    9999999999999999999753   345677899999999999999999999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      |||||+||+||.|+.||.+.+      +.+....|                                          ...
T Consensus       552 W~lGVLlyeML~Gq~PF~gdd------Eee~FdsI------------------------------------------~~d  583 (694)
T KOG0694|consen  552 WGLGVLLYEMLVGESPFPGDD------EEEVFDSI------------------------------------------VND  583 (694)
T ss_pred             HHHHHHHHHHHcCCCCCCCCC------HHHHHHHH------------------------------------------hcC
Confidence            999999999999999998776      33333332                                          333


Q ss_pred             hhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          255 KYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                      ...+|..++.++.++|+++|..||++|..     +++|.+||||++-
T Consensus       584 ~~~yP~~ls~ea~~il~~ll~k~p~kRLG~~e~d~~~i~~hpFFr~i  630 (694)
T KOG0694|consen  584 EVRYPRFLSKEAIAIMRRLLRKNPEKRLGSGERDAEDIKKHPFFRSI  630 (694)
T ss_pred             CCCCCCcccHHHHHHHHHHhccCcccccCCCCCCchhhhhCCccccC
Confidence            45667788999999999999999999985     5789999999974

>KOG0667 consensus Dual-specificity tyrosine-phosphorylation regulated kinase [General function prediction only]

Probab=100.00  E-value=1.3e-37  Score=290.89  Aligned_cols=264  Identities=23%  Similarity=0.288  Sum_probs=201.5

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHh----hhh----ccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKA----AQG----CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      .+++..||||++.-.      +++-+.+..+    ..+    -....++|++.+..- --+.++||.|++. -+|.+++.
T Consensus       208 ~~T~e~VAIKIiKN~------k~f~~Q~~~Ei~iL~~ln~~d~~~~~n~Vrm~d~F~-fr~HlciVfELL~-~NLYellK  279 (586)
T KOG0667|consen  208 HKTGEIVAIKIIKNK------KRFLRQAQIEIRILELLNKHDPDDKYNIVRMLDYFY-FRNHLCIVFELLS-TNLYELLK  279 (586)
T ss_pred             cCCCcEEEEEeeccC------hHHHHHHHHHHHHHHHHhccCCCCCeeEEEeeeccc-cccceeeeehhhh-hhHHHHHH
Confidence            567889999988643      2222222111    111    123336777665543 3467899999876 47888887


Q ss_pred             ccc--ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC--CcEEEEecCCceecCCCCCCCccCCCcchhHH
Q 045353           91 DSV--VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD--VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEV  162 (358)
Q Consensus        91 ~~~--~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~--~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~  162 (358)
                      ..-  .++...++.+..|++.++.+||..+|||-    |||||.+.  ..|||+|||+|++..+...+.+.++.|+|||+
T Consensus       280 ~n~f~Glsl~~ir~~~~Qil~~L~~L~~l~IIHcDLKPENILL~~~~r~~vKVIDFGSSc~~~q~vytYiQSRfYRAPEV  359 (586)
T KOG0667|consen  280 NNKFRGLSLPLVRKFAQQILTALLFLHELGIIHCDLKPENILLKDPKRSRIKVIDFGSSCFESQRVYTYIQSRFYRAPEV  359 (586)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCChhheeeccCCcCceeEEecccccccCCcceeeeeccccccchh
Confidence            543  46688999999999999999999999987    99999754  47899999999999988889999999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc-cCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR-HGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~  241 (358)
                      ++|.+|+.+.||||||||++||++|.+.|.|.+      +.++++.|++++|.||..+...+.....||.. .+.+....
T Consensus       360 ILGlpY~~~IDmWSLGCIlAEL~tG~PLfpG~n------e~DQl~~I~e~lG~Pp~~mL~~~~~~~kff~~~~~~~~~~~  433 (586)
T KOG0667|consen  360 ILGLPYDTAIDMWSLGCILAELFTGEPLFPGDN------EYDQLARIIEVLGLPPPKMLDTAKKAHKFFTSLKGFPRLCV  433 (586)
T ss_pred             hccCCCCCccceeehhhhHHhHhcCccccCCCC------HHHHHHHHHHHhCCCCHHHHHhccccceehhccCCceeeee
Confidence            999999999999999999999999999999887      89999999999999999999999888888887 33332111


Q ss_pred             hcc--CCc---ch-h---hHHhhh-----------cCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          242 RLR--FWP---MN-K---VLVEKY-----------DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~--~~~---~~-~---~~~~~~-----------~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...  ...   .. +   ......           .........|+|||.+||++||.+|+|+.|+|+||||+..
T Consensus       434 ~~~~~~~~k~~~~~~~~~~~~~~~~~P~~~~~l~~~~~~~~~~~F~dflk~~L~~dP~~R~tp~qal~Hpfl~~~  508 (586)
T KOG0667|consen  434 ETSAPRGTKSPEVRKYYRKARLERRGPPGSRSLESGLPKADDKLFIDFLKRCLEWDPAERITPAQALNHPFLTGT  508 (586)
T ss_pred             eecccccccchhhhhhhhhhcccccCCCCCcccchhcccccHHHHHHHHHHHhccCchhcCCHHHHhcCcccccc
Confidence            100  000   00 0   000010           1112345788999999999999999999999999999954

>KOG0599 consensus Phosphorylase kinase gamma subunit [Carbohydrate transport and metabolism]

Probab=100.00  E-value=6.2e-38  Score=263.86  Aligned_cols=230  Identities=20%  Similarity=0.235  Sum_probs=177.5

Q ss_pred             cccCcccccccccC----ccchhhhHHhh----HHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc
Q 045353           19 TESSASKENKSLYG----DLTKNQKKKVK----KKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      -++|-..|.|...-    ..+++ -++.+    ++.....|. .+|++|+.+.+..++ +.-+++|.|+|..|.|+|++.
T Consensus        39 k~t~~e~a~kii~~~at~~~~e~-~~~~~EaT~~Ev~ILRqv-~GHP~II~l~D~yes-~sF~FlVFdl~prGELFDyLt  115 (411)
T KOG0599|consen   39 KETGKEFAVKIIDVTATTESGET-PYEMREATRQEISILRQV-MGHPYIIDLQDVYES-DAFVFLVFDLMPRGELFDYLT  115 (411)
T ss_pred             cccccceeEEEEEecccccCCcc-HHHHHHHHHHHHHHHHHh-cCCCcEEEeeeeccC-cchhhhhhhhcccchHHHHhh
Confidence            45566666665543    33333 22222    222333454 588888888877765 446789999999999999999


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHh
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~  164 (358)
                      +.+.+++...+.+++++.+|+.|+|..+|+||    +|||++++.++||+|||+|+...  ......||||+|.|||.+.
T Consensus       116 s~VtlSEK~tR~iMrqlfegVeylHa~~IVHRDLKpENILlddn~~i~isDFGFa~~l~~GekLrelCGTPgYLAPEtik  195 (411)
T KOG0599|consen  116 SKVTLSEKETRRIMRQLFEGVEYLHARNIVHRDLKPENILLDDNMNIKISDFGFACQLEPGEKLRELCGTPGYLAPETIK  195 (411)
T ss_pred             hheeecHHHHHHHHHHHHHHHHHHHHhhhhhcccChhheeeccccceEEeccceeeccCCchhHHHhcCCCcccChhhee
Confidence            99999999999999999999999999999999    99999999999999999998764  4577789999999999986


Q ss_pred             C------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          165 G------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       165 ~------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      .      .+|+..+|+||+|||||.++.|.+||....      ..-.+..|++  |.        ..+            
T Consensus       196 C~m~e~~pGYs~EVD~Wa~GVImyTLLaGcpPFwHRk------QmlMLR~Ime--Gk--------yqF------------  247 (411)
T KOG0599|consen  196 CSMYENHPGYSKEVDEWACGVIMYTLLAGCPPFWHRK------QMLMLRMIME--GK--------YQF------------  247 (411)
T ss_pred             eecccCCCCccchhhHHHHHHHHHHHHcCCCchhHHH------HHHHHHHHHh--cc--------ccc------------
Confidence            3      249999999999999999999999996322      1112222221  00        000            


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                      ..+.+.+.+.+.+|||.+||+.||.+|+|++|+|+||||..
T Consensus       248 ----------------~speWadis~~~KdLIsrlLqVdp~~Ritake~LaHpff~q  288 (411)
T KOG0599|consen  248 ----------------RSPEWADISATVKDLISRLLQVDPTKRITAKEALAHPFFIQ  288 (411)
T ss_pred             ----------------CCcchhhccccHHHHHHHHHeeCchhcccHHHHhcChHHHH
Confidence                            11223455788999999999999999999999999999964

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-36  Score=274.14  Aligned_cols=170  Identities=69%  Similarity=1.273  Sum_probs=165.7

Q ss_pred             CCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHH
Q 045353          130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALM  209 (358)
Q Consensus       130 ~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i  209 (358)
                      +..|||+|||.|++.+..++..+.|+.|+||||+.|.+|++.+||||++|++|||+||...|.+.++.++..+.++++.|
T Consensus       390 di~vKIaDlGNACW~~khFT~DIQTRQYRapEVllGsgY~~~ADiWS~AC~~FELaTGDyLFePhsG~~Y~rDEDHiA~i  469 (590)
T KOG1290|consen  390 DIRVKIADLGNACWVHKHFTEDIQTRQYRAPEVLLGSGYSTSADIWSTACMAFELATGDYLFEPHSGENYSRDEDHIALI  469 (590)
T ss_pred             ceeEEEeeccchhhhhhhhchhhhhhhccCcceeecCCCCCchhHHHHHHHHHHhhcCceeecCCCCCCCCccHHHHHHH
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          210 MELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       210 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      ++++|.+|+.++..+.++..||++.+.++.+..+.+|++..++.+.|.++.....++.+||.-||+++|++|+||.++|+
T Consensus       470 ~ELLG~iPr~ia~~Gk~SRdFFnr~G~LrhI~~LK~WpL~~VL~eKY~~s~e~A~~fsdFL~PmLef~PeKR~tA~~cl~  549 (590)
T KOG1290|consen  470 MELLGKIPRKIALGGKYSRDFFNRRGELRHIRRLKPWPLYEVLIEKYEWSEEDAQQFSDFLSPMLEFDPEKRPTAAQCLK  549 (590)
T ss_pred             HHHHhhccHHHHhcCcchHhhhccccceecccccCCCcHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCccccccHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcCcCCCCCC
Q 045353          290 HPWMSAGPQL  299 (358)
Q Consensus       290 hpwf~~~~~~  299 (358)
                      |||++..+.+
T Consensus       550 hPwLn~~~~~  559 (590)
T KOG1290|consen  550 HPWLNPVAGP  559 (590)
T ss_pred             CccccCCCCC
Confidence            9999986654

>KOG0594 consensus Protein kinase PCTAIRE and related kinases [General function prediction only]

Probab=100.00  E-value=1.5e-37  Score=272.18  Aligned_cols=259  Identities=23%  Similarity=0.252  Sum_probs=194.1

Q ss_pred             cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCc-cccccCCCCCCC-----CCCCcccccCCCCCccccccc
Q 045353           19 TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEA-FDESEADSKPSS-----PDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      ..+|.-||.|.++-... +..-..-.|+.--...+  .+.+ ++.+.++.-+..     +.+|+|+||++- +|..++..
T Consensus        33 ~~~g~~VALKkirl~~~~EG~P~taiREisllk~L--~~~~~iv~L~dv~~~~~~~~~~~~l~lvfe~~d~-DL~~ymd~  109 (323)
T KOG0594|consen   33 KRTGKFVALKKIRLEFEEEGVPSTAIREISLLKRL--SHANHIVRLHDVIHTSNNHRGIGKLYLVFEFLDR-DLKKYMDS  109 (323)
T ss_pred             ecCCCEEEEEEEeccccccCCCchhhHHHHHHHHh--CCCcceEEEEeeeeecccccccceEEEEEEeecc-cHHHHHHh
Confidence            45667788888877665 33333333443333332  3333 777776665544     488999999875 56666654


Q ss_pred             cc----ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchh
Q 045353           92 SV----VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCP  160 (358)
Q Consensus        92 ~~----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aP  160 (358)
                      ..    ......++.++.|++.|+.|+|.++|+||    +|||++++|.+||+|||+|+...   ..+++.++|.||+||
T Consensus       110 ~~~~~~g~~~~~ik~~m~Qll~gl~~~H~~~IlHRDLKPQNlLi~~~G~lKlaDFGlAra~~ip~~~yt~evvTlWYRaP  189 (323)
T KOG0594|consen  110 LPKKPQGLPPRLIKSFMRQLLRGLAFLHSHGILHRDLKPQNLLISSSGVLKLADFGLARAFSIPMRTYTPEVVTLWYRAP  189 (323)
T ss_pred             ccccccCCCHHHHHHHHHHHHHHHHHHHhCCeecccCCcceEEECCCCcEeeeccchHHHhcCCcccccccEEEeeccCH
Confidence            33    45557899999999999999999999999    99999999999999999997654   346778999999999


Q ss_pred             HHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |+++|. .|+..+||||+|||++||+++++.|.+.+      +.+++..|++++|++..+.|........+-........
T Consensus       190 EvLlGs~~Ys~~vDiWs~GcIfaEm~~~~~LFpG~s------e~~ql~~If~~lGtP~e~~Wp~v~~~~~~k~~f~~~~~  263 (323)
T KOG0594|consen  190 EVLLGSTSYSTSVDIWSLGCIFAEMFTRRPLFPGDS------EIDQLFRIFRLLGTPNEKDWPGVSSLPDYKAPFPKWPG  263 (323)
T ss_pred             HHhcCCCcCCCCcchHhHHHHHHHHHhCCCCCCCCc------HHHHHHHHHHHcCCCCccCCCCccccccccccCcCCCC
Confidence            999998 49999999999999999999999999887      79999999999999998877665433332111111100


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                               .+.   ....-+...+...+++.+||+++|.+|.||+.+|.||||...+.
T Consensus       264 ---------~~~---l~~~~~~~~~~~~dll~~~L~y~p~~R~Sa~~al~h~yf~~~~~  310 (323)
T KOG0594|consen  264 ---------PKD---LSSILPKLDPDGIELLSKLLQYDPAKRISAKGALTHPYFSELPE  310 (323)
T ss_pred             ---------ccc---hHHhccccCccHHHHHHHHhccCcccCcCHHHHhcChhhccccc
Confidence                     000   00111222367889999999999999999999999999997644

>KOG0198 consensus MEKK and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.8e-37  Score=275.96  Aligned_cols=228  Identities=18%  Similarity=0.189  Sum_probs=180.3

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCC-CCCcccccCCCCCccccccccc-ccChhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSP-DNFSVDTIPNGVSVEERQNDSV-VNNESS   99 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iv~e~~~gg~L~~~~~~~~-~~~~~~   99 (358)
                      |.-.|+|...-.-+.. ...+.++.+...++.  +++||..+........ .++|.|||++||+|.+++...+ .+++..
T Consensus        42 g~~~AvK~v~~~~~~~-~~~l~~Ei~iL~~l~--~p~IV~~~G~~~~~~~~~~~i~mEy~~~GsL~~~~~~~g~~l~E~~  118 (313)
T KOG0198|consen   42 GELMAVKSVELEDSPT-SESLEREIRILSRLN--HPNIVQYYGSSSSRENDEYNIFMEYAPGGSLSDLIKRYGGKLPEPL  118 (313)
T ss_pred             Ccceeeeeeecccchh-HHHHHHHHHHHHhCC--CCCEEeeCCccccccCeeeEeeeeccCCCcHHHHHHHcCCCCCHHH
Confidence            6777888777663222 455677777777764  8888888887555554 7899999999999999999876 689999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCC------CCCCCccCCCcchhHHHhCCC-
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +..+.+++++|+.|+|++|++|+    +|||++. ++.+||+|||+|+....      ......||+.|||||++.++. 
T Consensus       119 v~~ytr~iL~GL~ylHs~g~vH~DiK~~NiLl~~~~~~~KlaDFG~a~~~~~~~~~~~~~~~~~Gtp~~maPEvi~~g~~  198 (313)
T KOG0198|consen  119 VRRYTRQILEGLAYLHSKGIVHCDIKPANILLDPSNGDVKLADFGLAKKLESKGTKSDSELSVQGTPNYMAPEVIRNGEV  198 (313)
T ss_pred             HHHHHHHHHHHHHHHHhCCEeccCcccceEEEeCCCCeEEeccCccccccccccccccccccccCCccccCchhhcCCCc
Confidence            99999999999999999999999    8999999 79999999999976552      133568999999999999633 


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ...++||||+||++.||+||.+||...        ......+..+....                               
T Consensus       199 ~~~~sDiWSlGCtVvEM~Tg~~PW~~~--------~~~~~~~~~ig~~~-------------------------------  239 (313)
T KOG0198|consen  199 ARRESDIWSLGCTVVEMLTGKPPWSEF--------FEEAEALLLIGRED-------------------------------  239 (313)
T ss_pred             CCccchhhhcCCEEEeccCCCCcchhh--------cchHHHHHHHhccC-------------------------------
Confidence            345999999999999999999999642        11111122111100                               


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                            ....++..++.++.+||.+||..||++||||+++|+|||.....
T Consensus       240 ------~~P~ip~~ls~~a~~Fl~~C~~~~p~~Rpta~eLL~hpf~~~~~  283 (313)
T KOG0198|consen  240 ------SLPEIPDSLSDEAKDFLRKCFKRDPEKRPTAEELLEHPFLKQNS  283 (313)
T ss_pred             ------CCCCCCcccCHHHHHHHHHHhhcCcccCcCHHHHhhChhhhccc
Confidence                  01134566789999999999999999999999999999998743

>KOG0582 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1.4e-37  Score=277.59  Aligned_cols=235  Identities=21%  Similarity=0.261  Sum_probs=184.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~~   98 (358)
                      .+.-||||.++=+-..+.-..++|+.+....  ..|++++... -..+.+..+|+||.||++||+.+++...  ..+.+.
T Consensus        50 ~~e~VAIK~inLEkc~~~ld~l~kE~~~msl--~~HPNIv~~~-~sFvv~~~LWvVmpfMa~GS~ldIik~~~~~Gl~E~  126 (516)
T KOG0582|consen   50 TNEVVAIKIINLEKCNNDLDALRKEVQTMSL--IDHPNIVTYH-CSFVVDSELWVVMPFMAGGSLLDIIKTYYPDGLEEA  126 (516)
T ss_pred             cCCEEEEEEeehhhhhhhHHHHHHHHHHhhh--cCCCCcceEE-EEEEecceeEEeehhhcCCcHHHHHHHHccccccHH
Confidence            4467899999887777777788888766655  4666666544 4455578999999999999999988753  358899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-------CCCCCccCCCcchhHHHhC--
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------QFTNDIQTRQYRCPEVLLG--  165 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------~~~~~~gt~~Y~aPE~l~~--  165 (358)
                      .|+.++++++.|+.|+|.+|-|||    .||||+++|.|||+|||.+..+..       .+.+.+||++|||||++..  
T Consensus       127 ~Ia~iLre~LkaL~YLH~~G~IHRdvKAgnILi~~dG~VkLadFgvsa~l~~~G~R~~~rf~tfvgtp~wmAPEvl~q~~  206 (516)
T KOG0582|consen  127 SIATILREVLKALDYLHQNGHIHRDVKAGNILIDSDGTVKLADFGVSASLFDSGDRQVTRFNTFVGTPCWMAPEVLMQQL  206 (516)
T ss_pred             HHHHHHHHHHHHHHHHHhcCceecccccccEEEcCCCcEEEcCceeeeeecccCceeeEeeccccCcccccChHHhhhcc
Confidence            999999999999999999999999    899999999999999998854321       1356699999999999765  


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .+|+.++||||||++..||.+|..||....        ..-..+..+-+.+|.... ..                     
T Consensus       207 ~GYdfKaDIwSfGITA~ELA~G~aPf~k~p--------PmkvLl~tLqn~pp~~~t-~~---------------------  256 (516)
T KOG0582|consen  207 HGYDFKADIWSFGITACELAHGHAPFSKYP--------PMKVLLLTLQNDPPTLLT-SG---------------------  256 (516)
T ss_pred             cCccchhhhhhhhHHHHHHhcCCCCcccCC--------hHHHHHHHhcCCCCCccc-cc---------------------
Confidence            359999999999999999999999996322        222345555566553221 00                     


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ..++....++..|+.+|..||+.||.+||||+++|+|+||+..
T Consensus       257 --------~~~d~~k~~~ksf~e~i~~CL~kDP~kRptAskLlkh~FFk~~  299 (516)
T KOG0582|consen  257 --------LDKDEDKKFSKSFREMIALCLVKDPSKRPTASKLLKHAFFKKA  299 (516)
T ss_pred             --------CChHHhhhhcHHHHHHHHHHhhcCcccCCCHHHHhccHHHhhc
Confidence                    0112223346689999999999999999999999999999864

>KOG0658 consensus Glycogen synthase kinase-3 [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.5e-37  Score=271.95  Aligned_cols=252  Identities=22%  Similarity=0.244  Sum_probs=192.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC----CCCCCcccccCCCCCcccccc----
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS----SPDNFSVDTIPNGVSVEERQN----   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iv~e~~~gg~L~~~~~----   90 (358)
                      .+++..||||-..++-     +=-.||.+...  ...|+++|++.......    ...+.+|||||+. +|.+.+.    
T Consensus        46 ~e~~~~vAIKKv~~d~-----r~knrEl~im~--~l~HpNIV~L~~~f~~~~~~d~~~lnlVleymP~-tL~~~~r~~~~  117 (364)
T KOG0658|consen   46 RETEEEVAIKKVLQDK-----RYKNRELQIMR--KLDHPNIVRLLYFFSSSTESDEVYLNLVLEYMPE-TLYRVIRHYTR  117 (364)
T ss_pred             cCCCceeEEEEecCCC-----CcCcHHHHHHH--hcCCcCeeeEEEEEEecCCCchhHHHHHHHhchH-HHHHHHHHHhh
Confidence            5567778887655432     12235556665  36888888876654322    2356699999987 4444444    


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecC--CCCCCCccCCCcchhHHH
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l  163 (358)
                      ....++...++.+..|+.+|+.|+|..+|+||    +|+|+|.+ |.+||||||.|+...  +...+.++|+.|+|||++
T Consensus       118 ~~~~mp~~~iKLYt~Qlfrgl~yLh~~~IcHRDIKPqNlLvD~~tg~LKicDFGSAK~L~~~epniSYicSRyYRaPELi  197 (364)
T KOG0658|consen  118 ANQRMPLLEIKLYTYQLFRGLAYLHSHGICHRDIKPQNLLVDPDTGVLKICDFGSAKVLVKGEPNISYICSRYYRAPELI  197 (364)
T ss_pred             cCCCCceeeeHHHHHHHHHHHHHHHhcCcccCCCChheEEEcCCCCeEEeccCCcceeeccCCCceeEEEeccccCHHHH
Confidence            45678888999999999999999999999999    99999987 999999999998754  445677899999999999


Q ss_pred             hCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +|.. |+.++||||.|||++||+-|++.|.|.+      ..+++..|.+++|.+..+..........   ..    ..+.
T Consensus       198 fga~~Yt~~IDiWSaGCV~aELl~g~plFpG~s------~~dQL~eIik~lG~Pt~e~I~~mn~~y~---~~----~~p~  264 (364)
T KOG0658|consen  198 FGATEYTTSIDIWSAGCVMAELLKGQPLFPGDS------SVDQLVEIIKVLGTPTREDIKSMNPNYT---EF----KFPQ  264 (364)
T ss_pred             cCccccCceeEEhhhhHHHHHHhcCCcccCCCC------HHHHHHHHHHHhCCCCHHHHhhcCcccc---cc----cCcc
Confidence            9976 9999999999999999999999999877      7899999999999999876554333211   00    0000


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ....+..+      -+....++++.+|+.++|+++|.+|.|+.|+|.||||....
T Consensus       265 ik~~~~~~------~~~~~~~~d~~dll~~~L~Y~P~~R~~~~~~l~h~fFdelr  313 (364)
T KOG0658|consen  265 IKAHPWHK------VFFKRLPPDALDLLSKLLQYSPSKRLSALEALAHPFFDELR  313 (364)
T ss_pred             ccccccee------ecccCCCHHHHHHHHHHhccChhhcCCHHHHhcchhhHHhh
Confidence            00000000      13345578899999999999999999999999999998753

>PTZ00284 protein kinase; Provisional

Probab=100.00  E-value=1.2e-36  Score=292.96  Aligned_cols=267  Identities=21%  Similarity=0.259  Sum_probs=185.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhc----cCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC----AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .++..||+|++.....  .....+++.+......    ..+..++.+...........|+|||++ |++|.+++.....+
T Consensus       152 ~~~~~vAvK~i~~~~~--~~~~~~~e~~~l~~l~~~~~~~~~~i~~i~~~~~~~~~~~~iv~~~~-g~~l~~~l~~~~~l  228 (467)
T PTZ00284        152 KRKEYCAVKIVRNVPK--YTRDAKIEIQFMEKVRQADPADRFPLMKIQRYFQNETGHMCIVMPKY-GPCLLDWIMKHGPF  228 (467)
T ss_pred             CCCeEEEEEEEecchh--hHHHHHHHHHHHHHHhhcCcccCcceeeeEEEEEcCCceEEEEEecc-CCCHHHHHHHcCCC
Confidence            3566789998864211  1122222322222211    122234444443334456789999998 77888877777778


Q ss_pred             ChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCC----------------cEEEEecCCceecCCCCCCCccC
Q 045353           96 NESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDV----------------QCKLVDFGNACWTHKQFTNDIQT  154 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~----------------~vkL~DFG~a~~~~~~~~~~~gt  154 (358)
                      .+.++..++.|++.|+.|+|. .+++||    +|||++.++                .+||+|||++.......+..+||
T Consensus       229 ~~~~~~~i~~qi~~aL~yLH~~~gIiHrDlKP~NILl~~~~~~~~~~~~~~~~~~~~~vkl~DfG~~~~~~~~~~~~~gt  308 (467)
T PTZ00284        229 SHRHLAQIIFQTGVALDYFHTELHLMHTDLKPENILMETSDTVVDPVTNRALPPDPCRVRICDLGGCCDERHSRTAIVST  308 (467)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEecCCcccccccccccCCCCceEEECCCCccccCccccccccCC
Confidence            899999999999999999997 699999    999998765                49999999987665556677999


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC--hhhhh
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS--RDFFN  232 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~  232 (358)
                      +.|+|||++.+..|+.++|||||||++|+|++|++||.+.+      ..+++..+.+.+|.+|..+.......  ..++.
T Consensus       309 ~~Y~APE~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~------~~~~~~~i~~~~g~~p~~~~~~~~~~~~~~~~~  382 (467)
T PTZ00284        309 RHYRSPEVVLGLGWMYSTDMWSMGCIIYELYTGKLLYDTHD------NLEHLHLMEKTLGRLPSEWAGRCGTEEARLLYN  382 (467)
T ss_pred             ccccCcHHhhcCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHcCCCCHHHHhhccchhHHHHhh
Confidence            99999999999999999999999999999999999997655      57888899999999988765432211  12222


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ....+.......  .................+.+.+||.+||++||++|||++|+|+||||....
T Consensus       383 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~ta~e~L~Hp~~~~~~  445 (467)
T PTZ00284        383 SAGQLRPCTDPK--HLARIARARPVREVIRDDLLCDLIYGLLHYDRQKRLNARQMTTHPYVLKYY  445 (467)
T ss_pred             hcccccccCCHH--HHHhhhcccchhhhhchHHHHHHHHHhCCcChhhCCCHHHHhcCccccccC
Confidence            222111000000  000000000000011246788999999999999999999999999998743

>KOG0201 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-38  Score=280.65  Aligned_cols=227  Identities=19%  Similarity=0.230  Sum_probs=185.1

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+++..||+|++.=+-.+..=..+.++....++.-  .+++ .-+.........+||+||||.||++.+++.....+.+.
T Consensus        35 ~~t~k~vAiKii~Le~~~deIediqqei~~Ls~~~--~~~i-t~yygsyl~g~~LwiiMey~~gGsv~~lL~~~~~~~E~  111 (467)
T KOG0201|consen   35 NKTKKVVAIKIIDLEEAEDEIEDIQQEISVLSQCD--SPNI-TEYYGSYLKGTKLWIIMEYCGGGSVLDLLKSGNILDEF  111 (467)
T ss_pred             ccccceEEEEEechhhcchhhHHHHHHHHHHHhcC--cchH-HhhhhheeecccHHHHHHHhcCcchhhhhccCCCCccc
Confidence            45667889999999998888888888887777743  3333 33344445567899999999999999999999988999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +++.++++++.|+.|+|..+.+||    .|||+..+|.+||+|||+|......   ..+.+|||+|||||++.+..|+.+
T Consensus       112 ~i~~ilre~l~~l~ylH~~~kiHrDIKaanil~s~~g~vkl~DfgVa~ql~~~~~rr~tfvGTPfwMAPEVI~~~~Y~~K  191 (467)
T KOG0201|consen  112 EIAVILREVLKGLDYLHSEKKIHRDIKAANILLSESGDVKLADFGVAGQLTNTVKRRKTFVGTPFWMAPEVIKQSGYDTK  191 (467)
T ss_pred             eeeeehHHHHHHhhhhhhcceecccccccceeEeccCcEEEEecceeeeeechhhccccccccccccchhhhccccccch
Confidence            999999999999999999999999    8999999999999999999765432   366799999999999998899999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||||++.+||++|.+|+....         .+..++-+-...|                                  
T Consensus       192 ADIWSLGITaiEla~GePP~s~~h---------PmrvlflIpk~~P----------------------------------  228 (467)
T KOG0201|consen  192 ADIWSLGITAIELAKGEPPHSKLH---------PMRVLFLIPKSAP----------------------------------  228 (467)
T ss_pred             hhhhhhhHHHHHHhcCCCCCcccC---------cceEEEeccCCCC----------------------------------
Confidence            999999999999999999996332         1111110000111                                  


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                          ..+...+++.+++|+..||..||+.||||.++|+|+|++.
T Consensus       229 ----P~L~~~~S~~~kEFV~~CL~k~P~~RpsA~~LLKh~FIk~  268 (467)
T KOG0201|consen  229 ----PRLDGDFSPPFKEFVEACLDKNPEFRPSAKELLKHKFIKR  268 (467)
T ss_pred             ----CccccccCHHHHHHHHHHhhcCcccCcCHHHHhhhHHHHh
Confidence                1122345788999999999999999999999999999986

>KOG0597 consensus Serine-threonine protein kinase FUSED [General function prediction only]

Probab=100.00  E-value=6.7e-37  Score=279.99  Aligned_cols=223  Identities=20%  Similarity=0.212  Sum_probs=184.4

Q ss_pred             ccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhH
Q 045353           24 SKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~  102 (358)
                      -||+|+.... -++..-+.++++.+....  +.|++|+.+.+..++ +..+|+|+|||.| +|+.++.....+.+.++..
T Consensus        29 ~vAik~i~K~gr~~k~l~~l~~ev~i~r~--lkHpniv~m~esfEt-~~~~~vVte~a~g-~L~~il~~d~~lpEe~v~~  104 (808)
T KOG0597|consen   29 VVAIKFIDKSGRNEKELKNLRQEVRILRS--LKHPNIVEMLESFET-SAHLWVVTEYAVG-DLFTILEQDGKLPEEQVRA  104 (808)
T ss_pred             EEEEEEehhcCCchHHHHHHHHHHHHHHh--cCCcchhhHHHhhcc-cceEEEEehhhhh-hHHHHHHhccCCCHHHHHH
Confidence            4677776542 223333556777666665  578888888877665 5689999999999 9999999999999999999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchhhh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSADLW  175 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~Diw  175 (358)
                      +..+++.++.|+|+++|+||    +|||++..|.+|+||||+|+.+...   .+...|||.|||||++.+.+|+..+|+|
T Consensus       105 ~a~~LVsaL~yLhs~rilhrd~kPqniLl~~~~~~KlcdFg~Ar~m~~~t~vltsikGtPlYmAPElv~e~pyd~~sDlW  184 (808)
T KOG0597|consen  105 IAYDLVSALYYLHSNRILHRDMKPQNILLEKGGTLKLCDFGLARAMSTNTSVLTSIKGTPLYMAPELVEEQPYDHTSDLW  184 (808)
T ss_pred             HHHHHHHHHHHHHhcCcccccCCcceeeecCCCceeechhhhhhhcccCceeeeeccCcccccCHHHHcCCCccchhhHH
Confidence            99999999999999999999    9999999999999999999887643   4566899999999999999999999999


Q ss_pred             hhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhh
Q 045353          176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEK  255 (358)
Q Consensus       176 SlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (358)
                      |+|||+||+++|++||...+         ....+..++                                       .+.
T Consensus       185 slGcilYE~~~G~PPF~a~s---------i~~Lv~~I~---------------------------------------~d~  216 (808)
T KOG0597|consen  185 SLGCILYELYVGQPPFYARS---------ITQLVKSIL---------------------------------------KDP  216 (808)
T ss_pred             HHHHHHHHHhcCCCCchHHH---------HHHHHHHHh---------------------------------------cCC
Confidence            99999999999999996432         222222222                                       122


Q ss_pred             hcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          256 YDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       256 ~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ..++...+..|++||.++|..||.+|+|..+++.|||+++...
T Consensus       217 v~~p~~~S~~f~nfl~gLL~kdP~~RltW~~Ll~HpF~k~~~~  259 (808)
T KOG0597|consen  217 VKPPSTASSSFVNFLQGLLIKDPAQRLTWTDLLGHPFWKGKIN  259 (808)
T ss_pred             CCCcccccHHHHHHHHHHhhcChhhcccHHHHhcChHHhhhhh
Confidence            3445567899999999999999999999999999999987533

>KOG0611 consensus Predicted serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=2.9e-37  Score=272.46  Aligned_cols=225  Identities=17%  Similarity=0.238  Sum_probs=188.8

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..|.-||+|+...+-.++.  -.++||+.+.+..  +.|++|+..+.+.+..+ .+.|||||..||+|.|++.....+++
T Consensus        76 ~sgR~VAiKsIrKdkIkdeqDlvhIRREIeIMSs--LNHPhII~IyEVFENkd-KIvivMEYaS~GeLYDYiSer~~LsE  152 (668)
T KOG0611|consen   76 KSGREVAIKSIRKDKIKDEQDLVHIRREIEIMSS--LNHPHIIQIYEVFENKD-KIVIVMEYASGGELYDYISERGSLSE  152 (668)
T ss_pred             cCCcEeehhhhhhhhcccHHHHHHHHHHHHHHhh--cCCCceeehhhhhcCCc-eEEEEEEecCCccHHHHHHHhccccH
Confidence            6788999999999876654  4788899888876  56788888887776644 67899999999999999999999999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCC-Cc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKY-ST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~-~~  170 (358)
                      .+++.+++||.+++.|+|.++++||    +|||+|.++++||+|||++-.+..  -+++.||+|.|.+||++.|.+| ++
T Consensus       153 rEaRhfFRQIvSAVhYCHknrVvHRDLKLENILLD~N~NiKIADFGLSNly~~~kfLqTFCGSPLYASPEIvNG~PY~GP  232 (668)
T KOG0611|consen  153 REARHFFRQIVSAVHYCHKNRVVHRDLKLENILLDQNNNIKIADFGLSNLYADKKFLQTFCGSPLYASPEIVNGTPYKGP  232 (668)
T ss_pred             HHHHHHHHHHHHHHHHHhhccceecccchhheeecCCCCeeeeccchhhhhccccHHHHhcCCcccCCccccCCCCCCCC
Confidence            9999999999999999999999999    999999999999999999966543  3678899999999999999998 88


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      .+|.|||||+||.|+.|..||+|.+.      ...+.+|.                                        
T Consensus       233 EVDsWsLGvLLYtLVyGtMPFDG~Dh------k~lvrQIs----------------------------------------  266 (668)
T KOG0611|consen  233 EVDSWSLGVLLYTLVYGTMPFDGRDH------KRLVRQIS----------------------------------------  266 (668)
T ss_pred             ccchhhHHHHHHHHhhcccccCCchH------HHHHHHhh----------------------------------------
Confidence            89999999999999999999987651      11221211                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                        .+.|. .+.-+.++..||++||.+||++|.|+.++-.|=|++-+
T Consensus       267 --~GaYr-EP~~PSdA~gLIRwmLmVNP~RRATieDiAsHWWvNwg  309 (668)
T KOG0611|consen  267 --RGAYR-EPETPSDASGLIRWMLMVNPERRATIEDIASHWWVNWG  309 (668)
T ss_pred             --ccccc-CCCCCchHHHHHHHHHhcCcccchhHHHHhhhheeecc
Confidence              11111 12224567799999999999999999999999998743

>cd07871 STKc_PCTAIRE3 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-3 kinase

Probab=100.00  E-value=6.9e-36  Score=270.02  Aligned_cols=252  Identities=21%  Similarity=0.246  Sum_probs=189.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .++..+|+|.+...........+.++.....+  ..|++++........ ....|+||||+.| +|.+++... ..+.+.
T Consensus        28 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~-~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~  103 (288)
T cd07871          28 LTENLVALKEIRLEHEEGAPCTAIREVSLLKN--LKHANIVTLHDIIHT-ERCLTLVFEYLDS-DLKQYLDNCGNLMSMH  103 (288)
T ss_pred             CCCCEEEEEEecccccCCcchhHHHHHHHHHh--CCCCCEeeEEEEEcC-CCeEEEEEeCCCc-CHHHHHHhcCCCCCHH
Confidence            35678899988765544445566666666655  356777776655443 4578999999986 788777543 346788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-CCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      .+..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||++.....   ......||+.|+|||++.+. .++.
T Consensus       104 ~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  183 (288)
T cd07871         104 NVKIFMFQLLRGLSYCHKRKILHRDLKPQNLLINEKGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSTEYST  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEECcCcceeeccCCCccccCceecccccChHHhcCCcccCc
Confidence            899999999999999999999999    999999999999999999976432   23345789999999999874 5899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|++||.+.+      ..+.+..+...++.++...+........+....-.     ...   ...
T Consensus       184 ~~DiwslG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~---~~~  249 (288)
T cd07871         184 PIDMWGVGCILYEMATGRPMFPGST------VKEELHLIFRLLGTPTEETWPGITSNEEFRSYLFP-----QYR---AQP  249 (288)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChHHhhccccchhhhccccC-----ccC---CCc
Confidence            9999999999999999999997654      56778888899998888776554333222111000     000   000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                          ........+.++.+||.+||++||.+|||++|+|+||||
T Consensus       250 ----~~~~~~~~~~~~~dll~~mL~~dp~~R~t~~~~l~hp~f  288 (288)
T cd07871         250 ----LINHAPRLDTDGIDLLSSLLLYETKSRISAEAALRHSYF  288 (288)
T ss_pred             ----hHHhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhcCCCC
Confidence                011123346788999999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-3 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-3 shows a restricted pattern of expression and is present in brain, kidney, and intestine. It is elevated in Alzheimer's disease (AD) and has been shown to associate with paired helical filament

>KOG0032 consensus Ca2+/calmodulin-dependent protein kinase, EF-Hand protein superfamily [Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-36  Score=277.80  Aligned_cols=230  Identities=23%  Similarity=0.306  Sum_probs=189.5

Q ss_pred             cCcccccccccCccchhhh--HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTKNQK--KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|+.......+.+  ..++++.+...++. +|++++.+.+..+..+ ..++|||+|.||+|++.+... .+++.
T Consensus        59 tg~~~A~K~i~k~~~~~~~~~~~v~~Ev~il~~l~-~hpniv~l~~~~e~~~-~~~lvmEL~~GGeLfd~i~~~-~~sE~  135 (382)
T KOG0032|consen   59 TGKEVACKVIPKRKLRGKEDREDVRREVAILQQLS-GHPNIVQLKDAFEDPD-SVYLVMELCEGGELFDRIVKK-HYSER  135 (382)
T ss_pred             CCceeEEEEeehhhccccccHHHHHHHHHHHHhcc-CCCCEEEEEEEEEcCC-eEEEEEEecCCchHHHHHHHc-cCCHH
Confidence            3778899999887776654  77888888887753 4888888888777655 889999999999999998876 48999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCC----CcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD----VQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~----~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .++.++++++.++.|+|+.|++||    +|+|+...    +.+|++|||+|.....  .....+||+.|+|||++.+.+|
T Consensus       136 da~~~~~~il~av~~lH~~gvvHrDlKpEN~L~~~~~~~~~~ik~~DFGla~~~~~~~~~~~~~Gtp~y~APEvl~~~~y  215 (382)
T KOG0032|consen  136 DAAGIIRQILEAVKYLHSLGVVHRDLKPENLLLASKDEGSGRIKLIDFGLAKFIKPGERLHTIVGTPEYVAPEVLGGRPY  215 (382)
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeccCCHHHeeeccccCCCCcEEEeeCCCceEccCCceEeeecCCccccCchhhcCCCC
Confidence            999999999999999999999999    99999654    4799999999987765  5677799999999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +..+||||+||++|.|++|.+||.+.+.      ......+..  |..                                
T Consensus       216 ~~~~DiWS~Gvi~yiLL~G~~PF~~~~~------~~~~~~i~~--~~~--------------------------------  255 (382)
T KOG0032|consen  216 GDEVDVWSIGVILYILLSGVPPFWGETE------FEIFLAILR--GDF--------------------------------  255 (382)
T ss_pred             CcccchhHHHHHHHHHhhCCCCCcCCCh------hHHHHHHHc--CCC--------------------------------
Confidence            9999999999999999999999987662      222211111  000                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                          .-..+.++..+..+.+||+.||..||.+|+|+.++|+|||+++..
T Consensus       256 ----~f~~~~w~~is~~akd~i~~ll~~dp~~R~ta~~~L~HpWi~~~~  300 (382)
T KOG0032|consen  256 ----DFTSEPWDDISESAKDFIRKLLEFDPRKRLTAAQALQHPWIKSIG  300 (382)
T ss_pred             ----CCCCCCccccCHHHHHHHHHhcccCcccCCCHHHHhcCccccCCc
Confidence                001133455688999999999999999999999999999999753

>cd07848 STKc_CDKL5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase Like 5

Probab=100.00  E-value=1.2e-35  Score=268.26  Aligned_cols=254  Identities=22%  Similarity=0.268  Sum_probs=186.3

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      ++..+|+|.+.... .......+.++.+....  ..+++++....... .+...|+||||+.++++..+......+.+..
T Consensus        25 ~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~  101 (287)
T cd07848          25 TKEIVAIKKFKDSEENEEVKETTLRELKMLRT--LKQENIVELKEAFR-RRGKLYLVFEYVEKNMLELLEEMPNGVPPEK  101 (287)
T ss_pred             CCcEEEEEEEecccccccchhhHHHHHHHHHh--CCCccccchhhhEe-cCCEEEEEEecCCCCHHHHHHhcCCCCCHHH
Confidence            56678888876543 23345566666665555  35667776655443 3567899999999998887665555678889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||++.....    ......||+.|+|||++.+..++.+
T Consensus       102 ~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  181 (287)
T cd07848         102 VRSYIYQLIKAIHWCHKNDIVHRDIKPENLLISHNDVLKLCDFGFARNLSEGSNANYTEYVATRWYRSPELLLGAPYGKA  181 (287)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccCcccccccccccccccccccccCCcHHHcCCCCCCc
Confidence            99999999999999999999999    999999999999999999976532    2234578999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|++||.+.+      ..+.+..+....+..|..........       ......   ........
T Consensus       182 ~DiwslGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~---~~~~~~~~  245 (287)
T cd07848         182 VDMWSVGCILGELSDGQPLFPGES------EIDQLFTIQKVLGPLPAEQMKLFYSN-------PRFHGL---RFPAVNHP  245 (287)
T ss_pred             hhHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhhCCCCHHHHHhhhcc-------chhccc---ccCcccCc
Confidence            999999999999999999997654      45667777888888776543211100       000000   00000000


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ...........+..+.+||.+||++||++|||++|+|+||||
T Consensus       246 ~~~~~~~~~~~s~~~~dll~~~L~~~P~~R~s~~~~l~hp~f  287 (287)
T cd07848         246 QSLERRYLGILSGVLLDLMKNLLKLNPTDRYLTEQCLNHPAF  287 (287)
T ss_pred             ccHHHhhhcccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence            000011223357789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 5 (CDKL5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Mutations in the gene encoding CDKL5, previously called STK9, are associated with early onset epilepsy and severe mental retardation [X-linked infantile spasm syndrome (ISSX) or West syndrome]. In addition, CDKL5 mutations also sometimes

>cd05571 STKc_PKB Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B

Probab=100.00  E-value=1.4e-36  Score=279.07  Aligned_cols=226  Identities=16%  Similarity=0.195  Sum_probs=175.4

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  ....++.++.+....  ..|++++....... .....|+||||++||+|.+++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--l~hp~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   94 (323)
T cd05571          18 ATGKYYAMKILKKEVIIAKDEVAHTLTESRVLQN--TRHPFLTALKYSFQ-THDRLCFVMEYANGGELFFHLSRERVFSE   94 (323)
T ss_pred             CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh--CCCCCCCCEEEEEE-cCCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            46778999988764422  223344445444444  35666666554433 34578999999999999999888778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus        95 ~~~~~~~~qi~~~L~~lH~~~ivHrDlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  174 (323)
T cd05571          95 DRARFYGAEIVSALGYLHSCDVVYRDLKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  174 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEeeCCCCcccccCCCcccceecCccccChhhhcCCCCCc
Confidence            9999999999999999999999999    99999999999999999986532   2234457999999999999989999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||.+.+      .......+.                                        
T Consensus       175 ~~DiwSlG~il~elltg~~Pf~~~~------~~~~~~~~~----------------------------------------  208 (323)
T cd05571         175 AVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELIL----------------------------------------  208 (323)
T ss_pred             cccCcccchhhhhhhcCCCCCCCCC------HHHHHHHHH----------------------------------------
Confidence            9999999999999999999996433      111111111                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                        .....++...+.++.+||.+||+.||++||     ++.++++||||...
T Consensus       209 --~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~h~~f~~~  257 (323)
T cd05571         209 --MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPEDAKEIMEHRFFASI  257 (323)
T ss_pred             --cCCCCCCCCCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence              011223445578899999999999999999     89999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. It is activated downstream of PI3K and plays important roles in diverse cellular functions including cell survival, growth, proliferation, angiogenesis, motility, and migration. PKB also has a central role in a variety of human cancers, having be

>cd05612 STKc_PRKX_like Catalytic domain of PRKX-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=3.9e-36  Score=272.05  Aligned_cols=225  Identities=15%  Similarity=0.106  Sum_probs=177.9

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|.+...-.  ..+...+.++.+....  +.|++++....... .....|+||||+.||+|.+++.....+.+.
T Consensus        25 ~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  101 (291)
T cd05612          25 SEHYYALKVMAIPEVIRLKQEQHVHNEKRVLKE--VSHPFIIRLFWTEH-DQRFLYMLMEYVPGGELFSYLRNSGRFSNS  101 (291)
T ss_pred             CCCEEEEEEEEHHHHhhhHHHHHHHHHHHHHHh--CCCCcHhhhHhhhc-cCCeEEEEEeCCCCCCHHHHHHHcCCCCHH
Confidence            567889998764321  2234455566555555  45677777665443 346789999999999999999877778889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..........+||+.|+|||++.+..++.++||
T Consensus       102 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di  181 (291)
T cd05612         102 TGLFYASEIVCALEYLHSKEIVYRDLKPENILLDKEGHIKLTDFGFAKKLRDRTWTLCGTPEYLAPEVIQSKGHNKAVDW  181 (291)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEEecCcchhccCCcccccCChhhcCHHHHcCCCCCchhhH
Confidence            999999999999999999999999    9999999999999999999876655556689999999999999889999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      |||||++|+|++|..||.+.+      .......+.                                          ..
T Consensus       182 wSlG~il~~l~~g~~pf~~~~------~~~~~~~i~------------------------------------------~~  213 (291)
T cd05612         182 WALGILIYEMLVGYPPFFDDN------PFGIYEKIL------------------------------------------AG  213 (291)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH------------------------------------------hC
Confidence            999999999999999997543      122221111                                          01


Q ss_pred             hhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          255 KYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                      ...++...+..+.+||.+||+.||.+|++     ++++++||||...
T Consensus       214 ~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  260 (291)
T cd05612         214 KLEFPRHLDLYAKDLIKKLLVVDRTRRLGNMKNGADDVKNHRWFKSV  260 (291)
T ss_pred             CcCCCccCCHHHHHHHHHHcCCCHHHccCCccCCHHHHhcCccccCC
Confidence            12233445678899999999999999995     9999999999853

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, PRKX-like kinases, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include human PRKX (X chromosome-encoded protein kinase), Drosophila DC2, and similar proteins. PRKX is present in many tissues including fetal and adult brain, kidney, and lung. The PRKX gene is located in the Xp22.3 subregion and has a homolog called PRKY on the Y chromosome. An abnormal interchange between PRKX aand PRKY leads to the sex reversal disorder of XX males and XY females. PRKX is implicated in granulocyt

>KOG0585 consensus Ca2+/calmodulin-dependent protein kinase kinase beta and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=100.00  E-value=6e-36  Score=268.92  Aligned_cols=228  Identities=18%  Similarity=0.224  Sum_probs=176.7

Q ss_pred             cccCcccccccccCccch--------hhh-----HHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCC
Q 045353           19 TESSASKENKSLYGDLTK--------NQK-----KKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVS   84 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~--------~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~   84 (358)
                      ...+.-+|+|++...--.        ...     .+.+++...+..  .+|+++|.+...-. ..+..+|+|+|||..|.
T Consensus       119 ~~~~~l~AiKil~K~~~~~~~~~~~~~a~~~~~~ekv~~EIailKk--l~H~nVV~LiEvLDDP~s~~~YlVley~s~G~  196 (576)
T KOG0585|consen  119 EVDGKLYAIKILPKKELRRQYGFPRQPAMKLMPIEKVRREIAILKK--LHHPNVVKLIEVLDDPESDKLYLVLEYCSKGE  196 (576)
T ss_pred             cCCCcEEEEEeechhhhhhhcccccccccccCcHHHHHHHHHHHHh--cCCcCeeEEEEeecCcccCceEEEEEeccCCc
Confidence            345567788888762111        111     256677666665  35677777666543 34688999999999999


Q ss_pred             cccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--------CCCCCc
Q 045353           85 VEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--------QFTNDI  152 (358)
Q Consensus        85 L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--------~~~~~~  152 (358)
                      +.+.-.....+.+.+++.+++.++.|+.|+|.+|||||    .|+||+++|++||+|||.+.....        .+...+
T Consensus       197 v~w~p~d~~els~~~Ar~ylrDvv~GLEYLH~QgiiHRDIKPsNLLl~~~g~VKIsDFGVs~~~~~~~~~~~d~~L~~tv  276 (576)
T KOG0585|consen  197 VKWCPPDKPELSEQQARKYLRDVVLGLEYLHYQGIIHRDIKPSNLLLSSDGTVKISDFGVSNEFPQGSDEGSDDQLSRTV  276 (576)
T ss_pred             cccCCCCcccccHHHHHHHHHHHHHHHHHHHhcCeeccccchhheEEcCCCcEEeeccceeeecccCCccccHHHHhhcC
Confidence            99877766669999999999999999999999999999    999999999999999999975521        234569


Q ss_pred             cCCCcchhHHHhCCC----CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh
Q 045353          153 QTRQYRCPEVLLGSK----YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR  228 (358)
Q Consensus       153 gt~~Y~aPE~l~~~~----~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  228 (358)
                      |||.|+|||.+.++.    .+.+.||||+||+||.|+.|+.||.+..      ..+....                    
T Consensus       277 GTPAF~APE~c~~~~~~~~~g~a~DiWalGVTLYCllfG~~PF~~~~------~~~l~~K--------------------  330 (576)
T KOG0585|consen  277 GTPAFFAPELCSGGNSFSYSGFALDIWALGVTLYCLLFGQLPFFDDF------ELELFDK--------------------  330 (576)
T ss_pred             CCccccchHhhcCCCCccccchhhhhhhhhhhHHHhhhccCCcccch------HHHHHHH--------------------
Confidence            999999999999843    3788999999999999999999996443      1222212                    


Q ss_pred             hhhhccCCchhhhhccCCcchhhHHhhhcCCh--hhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNE--RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                            +......+|.  .....+.|||.+||+.||++|+|..++..|||....
T Consensus       331 ----------------------Ivn~pL~fP~~pe~~e~~kDli~~lL~KdP~~Ri~l~~ik~Hpwvt~~  378 (576)
T KOG0585|consen  331 ----------------------IVNDPLEFPENPEINEDLKDLIKRLLEKDPEQRITLPDIKLHPWVTRD  378 (576)
T ss_pred             ----------------------HhcCcccCCCcccccHHHHHHHHHHhhcChhheeehhhheecceeccC
Confidence                                  2222233333  357899999999999999999999999999999875

>KOG0574 consensus STE20-like serine/threonine kinase MST [Signal transduction mechanisms]

Probab=100.00  E-value=6.8e-37  Score=260.86  Aligned_cols=229  Identities=22%  Similarity=0.260  Sum_probs=180.9

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      .++|.-+|||...-+.   .-..+-++.-..+| |  .+.+|.-+...--...++|||||||..||..+.+. ..-.+++
T Consensus        55 ~EsG~v~AIK~VPV~s---DLQEIIKEISIMQQ-C--~S~yVVKYYGSYFK~sDLWIVMEYCGAGSiSDI~R~R~K~L~E  128 (502)
T KOG0574|consen   55 RESGHVLAIKKVPVDT---DLQEIIKEISIMQQ-C--KSKYVVKYYGSYFKHSDLWIVMEYCGAGSISDIMRARRKPLSE  128 (502)
T ss_pred             hccCcEEEEEecCccc---hHHHHHHHHHHHHH-c--CCchhhhhhhhhccCCceEeehhhcCCCcHHHHHHHhcCCccH
Confidence            5677777888665433   33445555555554 3  34455555555556789999999999999999887 4457899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .+++.+++..+.|+.|+|+.+-|||    .|||++.+|+.||+|||.|.....   ..++.+|||.|||||++..-+|+.
T Consensus       129 ~EIs~iL~~TLKGL~YLH~~~KIHRDIKAGNILLNT~G~AKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVI~EIGY~~  208 (502)
T KOG0574|consen  129 QEISAVLRDTLKGLQYLHDLKKIHRDIKAGNILLNTDGIAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIEEIGYDT  208 (502)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHhhcccccEEEcccchhhhhhccccchhhhhHHhhCccccCcccccHHHHHHhccch
Confidence            9999999999999999999999999    899999999999999999966543   346779999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      .+||||||++..||..|++||.         +...+..|+-+-..+|+                                
T Consensus       209 ~ADIWSLGITaIEMAEG~PPYs---------DIHPMRAIFMIPT~PPP--------------------------------  247 (502)
T KOG0574|consen  209 KADIWSLGITAIEMAEGRPPYS---------DIHPMRAIFMIPTKPPP--------------------------------  247 (502)
T ss_pred             hhhHhhhcchhhhhhcCCCCcc---------cccccceeEeccCCCCC--------------------------------
Confidence            9999999999999999999995         33333333333222222                                


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                          .+..|...+.+|-||+++||...|++|.||.++++|||++..+.
T Consensus       248 ----TF~KPE~WS~~F~DFi~~CLiK~PE~R~TA~~L~~H~FiknA~g  291 (502)
T KOG0574|consen  248 ----TFKKPEEWSSEFNDFIRSCLIKKPEERKTALRLCEHTFIKNAPG  291 (502)
T ss_pred             ----CCCChHhhhhHHHHHHHHHhcCCHHHHHHHHHHhhhhhhcCCCc
Confidence                22334555889999999999999999999999999999997543

>cd07869 STKc_PFTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-1 kinase

Probab=100.00  E-value=3.7e-35  Score=267.19  Aligned_cols=257  Identities=19%  Similarity=0.202  Sum_probs=182.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~~   99 (358)
                      +|..+|+|.+...........+.++.....+  +.|++++........ ....|+||||+.+ +|.+++. ....+.+..
T Consensus        29 ~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~-~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~  104 (303)
T cd07869          29 NGKLVALKVIRLQEEEGTPFTAIREASLLKG--LKHANIVLLHDIIHT-KETLTLVFEYVHT-DLCQYMDKHPGGLHPEN  104 (303)
T ss_pred             CCCEEEEEEeccccccccchhHHHHHHHHhh--CCCCCcCeEEEEEec-CCeEEEEEECCCc-CHHHHHHhCCCCCCHHH
Confidence            5678899988765544445556666666555  356777766655443 4578999999975 5555554 345677888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-CCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-KYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~~~~~  171 (358)
                      +..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++.....   .....+||+.|+|||++.+. .++.+
T Consensus       105 ~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  184 (303)
T cd07869         105 VKLFLFQLLRGLSYIHQRYILHRDLKPQNLLISDTGELKLADFGLARAKSVPSHTYSNEVVTLWYRPPDVLLGSTEYSTC  184 (303)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECCCCcceeccCCCccCCCCcccCCCCChHHHcCCCCCCcH
Confidence            99999999999999999999999    999999999999999999965432   23456789999999999875 48999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|..||.+..     .....+..+...++.+....+........+....  ..      ...... 
T Consensus       185 ~DiwslG~il~~l~~g~~pf~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~------~~~~~~-  250 (303)
T cd07869         185 LDMWGVGCIFVEMIQGVAAFPGMK-----DIQDQLERIFLVLGTPNEDTWPGVHSLPHFKPER--FT------LYSPKN-  250 (303)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCc-----cHHHHHHHHHHHhCCCChhhccchhhcccccccc--cc------ccCCcc-
Confidence            999999999999999999997543     2456777777777766554433221110000000  00      000000 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ....+. ....++.+.+||.+||++||++|||+.|+|+||||+..
T Consensus       251 ~~~~~~-~~~~~~~~~dli~~mL~~dp~~R~s~~~~l~h~~f~~~  294 (303)
T cd07869         251 LRQAWN-KLSYVNHAEDLASKLLQCFPKNRLSAQAALSHEYFSDL  294 (303)
T ss_pred             HHHHhh-ccCCChHHHHHHHHHhccCchhccCHHHHhcCcccccC
Confidence            000000 11134678899999999999999999999999999864

Serine/Threonine Kinases (STKs), PFTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-1 is widely expressed except in the spleen and thymus. It is highly expressed in the brain, heart, pancreas, testis, and ovary, and is localized in the cytoplasm. It is regulated by cyclin D3 an

>cd07875 STKc_JNK1 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 1

Probab=100.00  E-value=1.6e-34  Score=269.71  Aligned_cols=264  Identities=20%  Similarity=0.259  Sum_probs=183.1

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .++..+|+|.+..... ....+++.++......  ..|++++........     .....|+||||+.++ |.+.+..  
T Consensus        47 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~ii~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~--  121 (364)
T cd07875          47 ILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC--VNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDAN-LCQVIQM--  121 (364)
T ss_pred             CCCcEEEEEEeCccccCchhHHHHHHHHHHHHh--cCCCCccccceeecccccccccCeEEEEEeCCCCC-HHHHHHh--
Confidence            4566789998876543 3334555555554444  456666666544322     224579999999874 4444432  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+....+..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||+|+.....  ....+||+.|+|||++.+..
T Consensus       122 ~~~~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~  201 (364)
T cd07875         122 ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  201 (364)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEECCCCcEEEEeCCCccccCCCCcccCCcccCCcCCHHHHhCCC
Confidence            36677888999999999999999999999    9999999999999999999765433  34458899999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|+.||.+.+      ..+.+..+...++.+++........... +................
T Consensus       202 ~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (364)
T cd07875         202 YKENVDIWSVGCIMGEMIKGGVLFPGTD------HIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLF  275 (364)
T ss_pred             CCchhhHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhhhHHHHHHHhhCCCcCCCChHhhC
Confidence            9999999999999999999999997654      5667777778888776654433222111 11111111000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      + ..............+..+.+||.+||+.||.+|||+.|+|+||||..
T Consensus       276 ~-~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~R~t~~e~L~hp~~~~  323 (364)
T cd07875         276 P-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINV  323 (364)
T ss_pred             c-cccccccccccccccHHHHHHHHHhcCcCcccCCCHHHHhcCccccc
Confidence            0 00000001112223567899999999999999999999999999975

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 1 (JNK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>cd07859 STKc_TDY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TDY Mitogen-Activated Protein Kinases from Plants

Probab=100.00  E-value=5.7e-35  Score=269.86  Aligned_cols=258  Identities=21%  Similarity=0.277  Sum_probs=188.2

Q ss_pred             cccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC----CCCCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..+|+|.+...... ....++.++.+....  +.|++++........    .....|+|||||. ++|.+++....
T Consensus        22 ~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~   98 (338)
T cd07859          22 THTGEKVAIKKINDVFEHVSDATRILREIKLLRL--LRHPDIVEIKHIMLPPSRREFKDIYVVFELME-SDLHQVIKAND   98 (338)
T ss_pred             CCCCCEEEEEEechhhccchhHHHHHHHHHHHHh--CCCCCEeeecceEeccCCCCCceEEEEEecCC-CCHHHHHHhcc
Confidence            346778999988754332 233456666666555  356777766554322    2235799999995 68888887777


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l  163 (358)
                      .+++..+..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||+++.....      ....+||+.|+|||++
T Consensus        99 ~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~  178 (338)
T cd07859          99 DLTPEHHQFFLYQLLRALKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELC  178 (338)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEccCccccccccccCccccccCCCCCCCcCCHHHH
Confidence            78899999999999999999999999999    9999999999999999999754211      2345799999999999


Q ss_pred             hC--CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh--hhhhccCCchh
Q 045353          164 LG--SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR--DFFNRHGDLRH  239 (358)
Q Consensus       164 ~~--~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~  239 (358)
                      .+  ..++.++|||||||++|+|++|++||.+.+      ...++..+...+|.++...........  .++.....   
T Consensus       179 ~~~~~~~~~~~DvwSlGvvl~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~---  249 (338)
T cd07859         179 GSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKN------VVHQLDLITDLLGTPSPETISRVRNEKARRYLSSMRK---  249 (338)
T ss_pred             hccccccCchhHHHHHHHHHHHHHcCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhhcc---
Confidence            76  568999999999999999999999997654      466777888888887766543222110  01000000   


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                         ..   ... .   ....+..++.+.+||.+||+.||++|||++|+|+||||+....
T Consensus       250 ---~~---~~~-~---~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~e~l~hp~f~~~~~  298 (338)
T cd07859         250 ---KQ---PVP-F---SQKFPNADPLALRLLERLLAFDPKDRPTAEEALADPYFKGLAK  298 (338)
T ss_pred             ---cC---CCc-h---HHhcCCCChHHHHHHHHHcCcCcccCCCHHHHhcCchhhhcCc
Confidence               00   000 0   0001234567889999999999999999999999999987443

Serine/Threonine Kinases (STKs), Plant TDY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TDY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. Oryza sativa contains at least 17 MAPKs. There are two subtypes of plant MAPKs based on the conserved phos

>PTZ00263 protein kinase A catalytic subunit; Provisional

Probab=100.00  E-value=5.5e-36  Score=275.73  Aligned_cols=226  Identities=14%  Similarity=0.107  Sum_probs=178.4

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  ...+...+.++.+...+  +.|++++....... .....|+||||+.||+|.+++.....+.+
T Consensus        41 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~  117 (329)
T PTZ00263         41 GTGEYYAIKCLKKREILKMKQVQHVAQEKSILME--LSHPFIVNMMCSFQ-DENRVYFLLEFVVGGELFTHLRKAGRFPN  117 (329)
T ss_pred             CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh--CCCCCCCcEEEEEE-cCCEEEEEEcCCCCChHHHHHHHcCCCCH
Confidence            356778999886532  22233455666655555  36777777665443 34678999999999999999988777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++..........+||+.|+|||++.+..++.++|
T Consensus       118 ~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  197 (329)
T PTZ00263        118 DVAKFYHAELVLAFEYLHSKDIIYRDLKPENLLLDNKGHVKVTDFGFAKKVPDRTFTLCGTPEYLAPEVIQSKGHGKAVD  197 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEECCCCCEEEeeccCceEcCCCcceecCChhhcCHHHHcCCCCCCcce
Confidence            8999999999999999999999999    999999999999999999987766556678999999999999988999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|..||.+.+      .......+.   .                                       
T Consensus       198 iwslG~il~elltg~~pf~~~~------~~~~~~~i~---~---------------------------------------  229 (329)
T PTZ00263        198 WWTMGVLLYEFIAGYPPFFDDT------PFRIYEKIL---A---------------------------------------  229 (329)
T ss_pred             eechHHHHHHHHcCCCCCCCCC------HHHHHHHHh---c---------------------------------------
Confidence            9999999999999999996433      111111111   0                                       


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                      ....++...+..+.+||.+||+.||.+|++     ++++++||||...
T Consensus       230 ~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~ll~hp~f~~~  277 (329)
T PTZ00263        230 GRLKFPNWFDGRARDLVKGLLQTDHTKRLGTLKGGVADVKNHPYFHGA  277 (329)
T ss_pred             CCcCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCccCCC
Confidence            111223344678899999999999999997     7999999999863

>KOG0192 consensus Tyrosine kinase specific for activated (GTP-bound) p21cdc42Hs [Signal transduction mechanisms]

Probab=100.00  E-value=6.4e-35  Score=267.08  Aligned_cols=221  Identities=17%  Similarity=0.193  Sum_probs=179.5

Q ss_pred             cCcc-cccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccC
Q 045353           21 SSAS-KENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNN   96 (358)
Q Consensus        21 ~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~   96 (358)
                      .|.. ||+|.+...- +....+.+++++.....  +.|++++............+.|||||+++|+|.+++..  ...++
T Consensus        63 ~g~~~vavK~~~~~~~~~~~~~~f~~E~~il~~--l~HpNIV~f~G~~~~~~~~~~iVtEy~~~GsL~~~l~~~~~~~l~  140 (362)
T KOG0192|consen   63 RGTDVVAVKIISDPDFDDESRKAFRREASLLSR--LRHPNIVQFYGACTSPPGSLCIVTEYMPGGSLSVLLHKKRKRKLP  140 (362)
T ss_pred             CCceeEEEEEecchhcChHHHHHHHHHHHHHHh--CCCCCeeeEEEEEcCCCCceEEEEEeCCCCcHHHHHhhcccCCCC
Confidence            4555 8999888744 33347788888887777  67899999888777666578999999999999999987  67889


Q ss_pred             hhhhhHHHHhhhhccccccCCC-CCCc----ccccccCCC-cEEEEecCCceecC---CCCCCCccCCCcchhHHHh--C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPS-RATR----KNLLAAVDV-QCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLL--G  165 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~-~~hr----~NILl~~~~-~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~--~  165 (358)
                      ...+..+..+++.|+.|+|+.+ ||||    +|||++.++ ++||||||+|+...   ...+...||+.|||||++.  .
T Consensus       141 ~~~~l~~aldiArGm~YLH~~~~iIHrDLK~~NiLv~~~~~~~KI~DFGlsr~~~~~~~~~~~~~GT~~wMAPEv~~~~~  220 (362)
T KOG0192|consen  141 LKVRLRIALDIARGMEYLHSEGPIIHRDLKSDNILVDLKGKTLKIADFGLSREKVISKTSMTSVAGTYRWMAPEVLRGEK  220 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeeecccChhhEEEcCCCCEEEECCCccceeeccccccccCCCCCccccChhhhcCCC
Confidence            9999999999999999999999 8999    999999997 99999999998766   3455579999999999999  5


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..|+.++||||||+++|||+||..||.+..      . .++...+-.-+.                              
T Consensus       221 ~~~~~K~DvySFgIvlWEl~t~~~Pf~~~~------~-~~~~~~v~~~~~------------------------------  263 (362)
T KOG0192|consen  221 SPYTEKSDVYSFGIVLWELLTGEIPFEDLA------P-VQVASAVVVGGL------------------------------  263 (362)
T ss_pred             CcCCccchhhhHHHHHHHHHHCCCCCCCCC------H-HHHHHHHHhcCC------------------------------
Confidence            589999999999999999999999997544      1 111111111111                              


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                               ...++..+++.+..||..||..||.+||++.+++.
T Consensus       264 ---------Rp~~p~~~~~~l~~l~~~CW~~dp~~RP~f~ei~~  298 (362)
T KOG0192|consen  264 ---------RPPIPKECPPHLSSLMERCWLVDPSRRPSFLEIVS  298 (362)
T ss_pred             ---------CCCCCccCCHHHHHHHHHhCCCCCCcCCCHHHHHH
Confidence                     11234446788999999999999999999999864

>cd05585 STKc_YPK1_like Catalytic domain of Yeast Protein Kinase 1-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=9.1e-36  Score=272.32  Aligned_cols=226  Identities=18%  Similarity=0.213  Sum_probs=176.6

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+....  +......+.++.+...+  ..|++++....... .....|+||||++||+|.+++.....+++
T Consensus        16 ~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~   92 (312)
T cd05585          16 DTQRIYALKTIRKAHIVSRSEVTHTLAERTVLAQ--VNCPFIVPLKFSFQ-SPEKLYLVLAFINGGELFHHLQREGRFDL   92 (312)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh--CCCCcEeceeeEEe-cCCeEEEEEcCCCCCcHHHHHHhcCCCCH
Confidence            356678999886532  33344555556555555  46777777654443 34678999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.|++.++.|+|+.+++||    +|||++.++.+||+|||+++...   ......+||+.|+|||++.+..++.
T Consensus        93 ~~~~~~~~qi~~~l~~lH~~~i~HrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  172 (312)
T cd05585          93 SRARFYTAELLCALENLHKFNVIYRDLKPENILLDYQGHIALCDFGLCKLNMKDDDKTNTFCGTPEYLAPELLLGHGYTK  172 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHeEECCCCcEEEEECcccccCccCCCccccccCCcccCCHHHHcCCCCCC
Confidence            9999999999999999999999999    99999999999999999997532   2233457999999999999989999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||.+.+      .......+.                                        
T Consensus       173 ~~DvwslGvil~el~tg~~pf~~~~------~~~~~~~~~----------------------------------------  206 (312)
T cd05585         173 AVDWWTLGVLLYEMLTGLPPFYDEN------VNEMYRKIL----------------------------------------  206 (312)
T ss_pred             ccceechhHHHHHHHhCCCCcCCCC------HHHHHHHHH----------------------------------------
Confidence            9999999999999999999996533      111111111                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC---CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP---TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~---ta~elL~hpwf~~~  296 (358)
                        .....++...++.+.+||.+||..||.+||   ++.|+|.||||...
T Consensus       207 --~~~~~~~~~~~~~~~~li~~~L~~dp~~R~~~~~~~e~l~hp~~~~~  253 (312)
T cd05585         207 --QEPLRFPDGFDRDAKDLLIGLLSRDPTRRLGYNGAQEIKNHPFFSQL  253 (312)
T ss_pred             --cCCCCCCCcCCHHHHHHHHHHcCCCHHHcCCCCCHHHHHcCCCcCCC
Confidence              112233445578899999999999999997   58999999999864

Serine/Threonine Kinases (STKs), Yeast protein kinase 1 (YPK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YPK1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the AGC STKs, Saccharomyces cerevisiae YPK1 and Schizosaccharomyces pombe Gad8p. YPK1 is required for cell growth and acts as a downstream kinase in the sphingolipid-mediated signaling pathway of yeast. It also plays a role in efficient endocytosis and in the maintenance of cell wall integrity. Gad8p is a downstream target of Tor1p, the fission yeast homolog of mTOR. It pl

>KOG0671 consensus LAMMER dual specificity kinases [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-35  Score=259.16  Aligned_cols=263  Identities=24%  Similarity=0.316  Sum_probs=189.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHH----hhhhccC---CCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKK----AAQGCAG---TEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~---~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+++.+||+|+....-      +++..++.    .+....+   +.+-...-.+...-.+..+||.|.+ |-|+++++..
T Consensus       111 ~~~~~~vAlKIik~V~------kYreAa~iEi~vLqki~~~DP~g~~rcv~m~~wFdyrghiCivfell-G~S~~dFlk~  183 (415)
T KOG0671|consen  111 RETKEHVALKIIKNVD------KYREAALIEIEVLQKINESDPNGKFRCVQMRDWFDYRGHICIVFELL-GLSTFDFLKE  183 (415)
T ss_pred             cCCCceehHHHHHHHH------HHhhHHHHHHHHHHHHHhcCCCCceEEEeeehhhhccCceEEEEecc-ChhHHHHhcc
Confidence            5668889999887643      22222211    1121101   1111222222233346778888865 5588888886


Q ss_pred             cc--ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC--------------------CCcEEEEecCCceecC
Q 045353           92 SV--VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV--------------------DVQCKLVDFGNACWTH  145 (358)
Q Consensus        92 ~~--~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~--------------------~~~vkL~DFG~a~~~~  145 (358)
                      +.  .+...+++.+-.|+++++.++|+.+++|.    +|||+.+                    +..|||+|||.|.+.+
T Consensus       184 N~y~~fpi~~ir~m~~QL~~sv~fLh~~kl~HTDLKPENILfvss~~~~~~~~k~~~~~~r~~ks~~I~vIDFGsAtf~~  263 (415)
T KOG0671|consen  184 NNYIPFPIDHIRHMGYQLLESVAFLHDLKLTHTDLKPENILFVSSEYFKTYNPKKKVCFIRPLKSTAIKVIDFGSATFDH  263 (415)
T ss_pred             CCccccchHHHHHHHHHHHHHHHHHHhcceeecCCChheEEEeccceEEEeccCCccceeccCCCcceEEEecCCcceec
Confidence            44  46678999999999999999999999987    9999842                    2458999999999988


Q ss_pred             CCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          146 KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       146 ~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                      +.-++.+.|..|+|||+++|.+++.++||||+||||+|+.+|...|++..      +.++++.|.+++|++|..+.....
T Consensus       264 e~hs~iVsTRHYRAPEViLgLGwS~pCDvWSiGCIL~ElytG~~LFqtHe------n~EHLaMMerIlGp~P~~mi~r~~  337 (415)
T KOG0671|consen  264 EHHSTIVSTRHYRAPEVILGLGWSQPCDVWSIGCILVELYTGETLFQTHE------NLEHLAMMERILGPIPSRMIKKTR  337 (415)
T ss_pred             cCcceeeeccccCCchheeccCcCCccCceeeeeEEEEeeccceecccCC------cHHHHHHHHHhhCCCcHHHhhhhh
Confidence            88888899999999999999999999999999999999999999999876      789999999999999998876654


Q ss_pred             CChhhhhccCCchhhhhcc-----C-CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          226 YSRDFFNRHGDLRHIRRLR-----F-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ...+|... .+.+.....     . ....+.+.......+.....+.|||++||.+||.+|+|+.|+|.||||+..
T Consensus       338 -~~Kyf~~~-rldw~e~~~~~~~k~v~~~ckpl~~~~~~~d~e~~~LfDLl~~mL~fDP~~RiTl~EAL~HpFF~~~  412 (415)
T KOG0671|consen  338 -KEKYFRRG-RLDWPEVSSKGKSKYVFEPCKPLKKYMLQDDLEHVQLFDLLRRMLEFDPARRITLREALSHPFFARL  412 (415)
T ss_pred             -hHhhhhcc-cccCccccccccchhhhcCCccHHHHhccCcHHHhHHHHHHHHHHccCccccccHHHHhcCHHhhcC
Confidence             33333332 222111100     0 001111111112233445679999999999999999999999999999864

>cd07876 STKc_JNK2 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 2

Probab=100.00  E-value=1.3e-34  Score=269.79  Aligned_cols=264  Identities=20%  Similarity=0.267  Sum_probs=182.5

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..+|+|.+...... ....++.++......  ..|++++.........     ....|+||||++++.+ +.+..  
T Consensus        44 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~-~~~~~--  118 (359)
T cd07876          44 VLGINVAVKKLSRPFQNQTHAKRAYRELVLLKC--VNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDANLC-QVIHM--  118 (359)
T ss_pred             CCCceeEEEEecccccchhHHHHHHHHHHHHHh--CCCCCEeeeeeeeccCCCccccceeEEEEeCCCcCHH-HHHhc--
Confidence            45778999998765433 344556666555544  4677777766544322     2357999999987644 33322  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++.....  ......||+.|+|||++.+..
T Consensus       119 ~~~~~~~~~~~~qi~~~L~~LH~~~ivHrDlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~  198 (359)
T cd07876         119 ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTACTNFMMTPYVVTRYYRAPEVILGMG  198 (359)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEecCCCccccccCccCCCCcccCCCCCchhccCCC
Confidence            36777888999999999999999999999    999999999999999999975432  234568899999999999989


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|+.||.+.+      ..+.+..+.+.++.++............ +................
T Consensus       199 ~~~~~DiwSlG~il~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (359)
T cd07876         199 YKENVDIWSVGCIMGELVKGSVIFQGTD------HIDQWNKVIEQLGTPSAEFMNRLQPTVRNYVENRPQYPGISFEELF  272 (359)
T ss_pred             CCcchhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhCCCCCCcchhhhc
Confidence            9999999999999999999999997654      4567777788887776544322111100 11111110000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      +. .............+..+.+||.+||++||++|||+.|+|+||||..
T Consensus       273 ~~-~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~  320 (359)
T cd07876         273 PD-WIFPSESERDKLKTSQARDLLSKMLVIDPDKRISVDEALRHPYITV  320 (359)
T ss_pred             cc-cccccccccccccchhHHHHHHHHhccCcccCCCHHHHhcCchhhh
Confidence            00 0000000112233577899999999999999999999999999985

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 2 (JNK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK1, like JNK2, is expressed in every cell and tissue type. Initially it was thought that JNK1 and JNK2 were functionally redundant as mice deficient in either genes (Jn

>PTZ00426 cAMP-dependent protein kinase catalytic subunit; Provisional

Probab=100.00  E-value=1.1e-35  Score=274.66  Aligned_cols=223  Identities=17%  Similarity=0.095  Sum_probs=175.6

Q ss_pred             cccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           23 ASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ..+|+|.+.....  ......+.++.+....  +.|++++....... .....|+||||+.||+|.+++.....+.+..+
T Consensus        57 ~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~Iv~~~~~~~-~~~~~~lv~Ey~~~g~L~~~i~~~~~~~~~~~  133 (340)
T PTZ00426         57 PPVAIKRFEKSKIIKQKQVDHVFSERKILNY--INHPFCVNLYGSFK-DESYLYLVLEFVIGGEFFTFLRRNKRFPNDVG  133 (340)
T ss_pred             eEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh--CCCCCCcceEEEEE-eCCEEEEEEeCCCCCcHHHHHHHcCCCCHHHH
Confidence            4678887754322  2233445555555544  35777777665543 34578999999999999999988778889999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWS  176 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwS  176 (358)
                      ..++.|++.++.|+|+.+++||    +|||++.++.+||+|||++..........+||+.|+|||++.+..++.++||||
T Consensus       134 ~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~ikL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwS  213 (340)
T PTZ00426        134 CFYAAQIVLIFEYLQSLNIVYRDLKPENLLLDKDGFIKMTDFGFAKVVDTRTYTLCGTPEYIAPEILLNVGHGKAADWWT  213 (340)
T ss_pred             HHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEecCCCCeecCCCcceecCChhhcCHHHHhCCCCCccccccc
Confidence            9999999999999999999999    999999999999999999987766556678999999999999988999999999


Q ss_pred             hhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhh
Q 045353          177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY  256 (358)
Q Consensus       177 lGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (358)
                      +||++|+|++|.+||.+.+      .......+..                                          ...
T Consensus       214 lGvil~ell~G~~Pf~~~~------~~~~~~~i~~------------------------------------------~~~  245 (340)
T PTZ00426        214 LGIFIYEILVGCPPFYANE------PLLIYQKILE------------------------------------------GII  245 (340)
T ss_pred             hhhHHHHHhcCCCCCCCCC------HHHHHHHHhc------------------------------------------CCC
Confidence            9999999999999997543      1111111110                                          111


Q ss_pred             cCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          257 DFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       257 ~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                      .++...+..+.+||.+||+.||++|+     |++++++||||...
T Consensus       246 ~~p~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~hp~f~~~  290 (340)
T PTZ00426        246 YFPKFLDNNCKHLMKKLLSHDLTKRYGNLKKGAQNVKEHPWFGNI  290 (340)
T ss_pred             CCCCCCCHHHHHHHHHHcccCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence            23344567889999999999999996     89999999999864

>cd05593 STKc_PKB_gamma Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B gamma

Probab=100.00  E-value=1.6e-35  Score=272.59  Aligned_cols=227  Identities=18%  Similarity=0.205  Sum_probs=175.9

Q ss_pred             cccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..+|+|.+.....  .....++.++.+....  ..|++++....... ....+|+||||++||+|.+++.....+.
T Consensus        17 ~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~l~   93 (328)
T cd05593          17 KASGKYYAMKILKKEVIIAKDEVAHTLTESRVLKN--TRHPFLTSLKYSFQ-TKDRLCFVMEYVNGGELFFHLSRERVFS   93 (328)
T ss_pred             CCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh--CCCCCCcceEEEEE-cCCEEEEEEeCCCCCCHHHHHHhcCCCC
Confidence            34677899999876543  2333445555554444  35666666554433 3457899999999999999888777788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+++...   ......+||+.|+|||++.+..++
T Consensus        94 ~~~~~~~~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  173 (328)
T cd05593          94 EDRTRFYGAEIVSALDYLHSGKIVYRDLKLENLMLDKDGHIKITDFGLCKEGITDAATMKTFCGTPEYLAPEVLEDNDYG  173 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEecccCHHHeEECCCCcEEEecCcCCccCCCcccccccccCCcCccChhhhcCCCCC
Confidence            99999999999999999999999999    99999999999999999987532   223345799999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||...+      .......+.                                       
T Consensus       174 ~~~DiwslGvil~elltG~~Pf~~~~------~~~~~~~~~---------------------------------------  208 (328)
T cd05593         174 RAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELIL---------------------------------------  208 (328)
T ss_pred             ccCCccccchHHHHHhhCCCCCCCCC------HHHHHHHhc---------------------------------------
Confidence            99999999999999999999996433      111111110                                       


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                         .....++...+.++.+||.+||+.||++|+     ++.|+++||||...
T Consensus       209 ---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  257 (328)
T cd05593         209 ---MEDIKFPRTLSADAKSLLSGLLIKDPNKRLGGGPDDAKEIMRHSFFTGV  257 (328)
T ss_pred             ---cCCccCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence               011223445578899999999999999997     89999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, gamma (or Akt3) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-gamma is predominantly expressed in neuronal tissues. Mice deficient in PKB-gamma show a reduction in brain weight due to the decreases in cell size and cell number. PKB-gamma has also been shown to be upregulate

>KOG0591 consensus NIMA (never in mitosis)-related G2-specific serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=4.9e-35  Score=247.33  Aligned_cols=216  Identities=17%  Similarity=0.197  Sum_probs=169.7

Q ss_pred             cccCccccccccc-CccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCC-CCcccccCCCCCcccccc----cc
Q 045353           19 TESSASKENKSLY-GDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPD-NFSVDTIPNGVSVEERQN----DS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~iv~e~~~gg~L~~~~~----~~   92 (358)
                      .-+|..+|.|-.. +-+.+..+...-.+.-...|  +.|++|+..+......+.. ++||||||.+|+|...+.    ..
T Consensus        41 ~~~g~l~a~K~i~f~~md~k~rq~~v~Ei~lLkQ--L~HpNIVqYy~~~f~~~~evlnivmE~c~~GDLsqmIk~~K~qk  118 (375)
T KOG0591|consen   41 LLDGKLVALKKIQFGMMDAKARQDCVKEISLLKQ--LNHPNIVQYYAHSFIEDNEVLNIVMELCDAGDLSQMIKHFKKQK  118 (375)
T ss_pred             ccCcchhhhhhcchhhccHHHHHHHHHHHHHHHh--cCCchHHHHHHHhhhccchhhHHHHHhhcccCHHHHHHHHHhcc
Confidence            3455566655444 33444455555666666666  5788999988866666666 999999999999999776    45


Q ss_pred             cccChhhhhHHHHhhhhccccccC--CC--CCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRR--PS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPE  161 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~--~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE  161 (358)
                      ..+.+..+..++.|++.++..+|.  ..  ++||    .||+++.+|.+||+|||+++..+..   ..+.+|||.||+||
T Consensus       119 r~ipE~~Vwk~f~QL~~AL~~cH~~~~r~~VmHRDIKPaNIFl~~~gvvKLGDfGL~r~l~s~~tfA~S~VGTPyYMSPE  198 (375)
T KOG0591|consen  119 RLIPEKTVWKYFVQLCRALYHCHSKIPRGTVMHRDIKPANIFLTANGVVKLGDFGLGRFLSSKTTFAHSLVGTPYYMSPE  198 (375)
T ss_pred             ccCchHHHHHHHHHHHHHHHHHhccccccceeeccCcchheEEcCCCceeeccchhHhHhcchhHHHHhhcCCCcccCHH
Confidence            578899999999999999999998  44  6677    8999999999999999999987754   34669999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+.+|+.++||||+||++|||..-++||.+.+       ...+..-+                               
T Consensus       199 ~i~~~~Y~~kSDiWslGCllyEMcaL~~PF~g~n-------~~~L~~KI-------------------------------  240 (375)
T KOG0591|consen  199 RIHESGYNFKSDIWSLGCLLYEMCALQSPFYGDN-------LLSLCKKI-------------------------------  240 (375)
T ss_pred             HHhcCCCCcchhHHHHHHHHHHHHhcCCCccccc-------HHHHHHHH-------------------------------
Confidence            9999999999999999999999999999998764       22222111                               


Q ss_pred             hccCCcchhhHHhhh-cCC-hhhHHHHHHHHHhccccCCCCCCCH
Q 045353          242 RLRFWPMNKVLVEKY-DFN-ERDAKDMADFLVPILDFVPEKRPTA  284 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~-~~~-~~~~~~~~~li~~~L~~dP~~R~ta  284 (358)
                                ..+.+ +.| ...|.++..||..|+..||+.||+.
T Consensus       241 ----------~qgd~~~~p~~~YS~~l~~li~~ci~vd~~~RP~t  275 (375)
T KOG0591|consen  241 ----------EQGDYPPLPDEHYSTDLRELINMCIAVDPEQRPDT  275 (375)
T ss_pred             ----------HcCCCCCCcHHHhhhHHHHHHHHHccCCcccCCCc
Confidence                      11111 123 4458899999999999999999985

>cd07874 STKc_JNK3 Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase 3

Probab=100.00  E-value=4.1e-34  Score=266.08  Aligned_cols=265  Identities=19%  Similarity=0.258  Sum_probs=183.0

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+..+|+|.+...... ...+++.++......  ..|++++........     .....|+||||++++ |.+.+..  
T Consensus        40 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~--  114 (355)
T cd07874          40 VLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC--VNHKNIISLLNVFTPQKSLEEFQDVYLVMELMDAN-LCQVIQM--  114 (355)
T ss_pred             CCCceEEEEEeCCcccChHHHHHHHHHHHHHHH--hCCCchhceeeeeeccccccccceeEEEhhhhccc-HHHHHhh--
Confidence            35667899988765443 334555556554444  466777666554322     224579999999875 4444432  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .++...+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....  ....+||+.|+|||++.+..
T Consensus       115 ~l~~~~~~~~~~qi~~aL~~LH~~givHrDikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  194 (355)
T cd07874         115 ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  194 (355)
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChHHEEECCCCCEEEeeCcccccCCCccccCCccccCCccCHHHHcCCC
Confidence            36778888999999999999999999999    9999999999999999999765433  34458999999999999989


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|+.||.+..      ..+.+..+.+.++.+............. +................
T Consensus       195 ~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (355)
T cd07874         195 YKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLF  268 (355)
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhcHHHHHHHhcCCccccccchhhc
Confidence            9999999999999999999999997654      4566677777777766554433221111 11111111000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      + ..............+..+.+||.+||..||++|||+.|+|+||||...
T Consensus       269 ~-~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~Rps~~ell~hp~~~~~  317 (355)
T cd07874         269 P-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDEALQHPYINVW  317 (355)
T ss_pred             c-ccccccccccccccchHHHHHHHHHhcCCchhcCCHHHHhcCcchhcc
Confidence            0 000000011222345678999999999999999999999999999854

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. Vetebrates harbor three different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is expressed primarily in the brain, and to a lesser extent in the heart and testis. Mice deficient in Jnk3 are protected against kainic acid-induced seizures, strok

>cd05590 STKc_nPKC_eta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C eta

Probab=100.00  E-value=4.5e-35  Score=268.63  Aligned_cols=227  Identities=19%  Similarity=0.221  Sum_probs=174.4

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.....  ......+.++.+..... ..+++++....... ....+|+||||++||+|.+++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~h~~iv~~~~~~~-~~~~~~iv~Ey~~~g~L~~~i~~~~~l~~   95 (320)
T cd05590          18 ESGRLYAVKVLKKDVILQDDDVECTMTEKRILSLA-RNHPFLTQLYCCFQ-TPDRLFFVMEFVNGGDLMFHIQKSRRFDE   95 (320)
T ss_pred             CCCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHhc-cCCCchhceeeEEE-cCCEEEEEEcCCCCchHHHHHHHcCCCCH
Confidence            3567889998876532  22233333444433332 35667776665443 34578999999999999998887778889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~ql~~~L~~lH~~~ivH~dlkp~NIli~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (320)
T cd05590          96 ARARFYAAEITSALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGIFNGKTTSTFCGTPDYIAPEILQEMLYGP  175 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeeCCCCeecCcCCCcccccccCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    99999999999999999986532   2234457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|+.||.+.+      .......+.   ..                                   
T Consensus       176 ~~DiwslG~il~el~~g~~Pf~~~~------~~~~~~~i~---~~-----------------------------------  211 (320)
T cd05590         176 SVDWWAMGVLLYEMLCGHAPFEAEN------EDDLFEAIL---ND-----------------------------------  211 (320)
T ss_pred             ccchhhhHHHHHHHhhCCCCCCCCC------HHHHHHHHh---cC-----------------------------------
Confidence            9999999999999999999997543      222222221   10                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH------HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA------AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta------~elL~hpwf~~~  296 (358)
                          ....+...+.++.+||.+||+.||++|+++      +++++||||...
T Consensus       212 ----~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~~~~h~~f~~~  259 (320)
T cd05590         212 ----EVVYPTWLSQDAVDILKAFMTKNPTMRLGSLTLGGEEAILRHPFFKEL  259 (320)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCCCHHHHHcCCCcCCC
Confidence                112233346788999999999999999998      999999999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), eta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-eta is predominantly expressed in squamous epithelia, where it plays a crucial role in the signal

>cd05600 STKc_Sid2p_Dbf2p Catalytic domain of Fungal Sid2p- and Dbf2p-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=7.5e-35  Score=268.71  Aligned_cols=234  Identities=16%  Similarity=0.178  Sum_probs=178.6

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  +....+.++.+...+  ..+++++....... .....|+||||++||+|.+++.....+.+
T Consensus        24 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~iv~~~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~~~l~~  100 (333)
T cd05600          24 DTGEIVALKRMKKSLLFKLNEVRHVLTERDILTT--TKSEWLVKLLYAFQ-DDEYLYLAMEYVPGGDFRTLLNNLGVLSE  100 (333)
T ss_pred             CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHh--CCCCCCccEEEEEE-cCCEEEEEEeCCCCCCHHHHHHHcCCCCH
Confidence            35778999998765432  233444555554444  34667776654443 34578999999999999999988778889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|..........+||+.|+|||++.+..++.++|
T Consensus       101 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  180 (333)
T cd05600         101 DHARFYMAEMFEAVDALHELGYIHRDLKPENFLIDASGHIKLTDFGLSKGIVTYANSVVGSPDYMAPEVLRGKGYDFTVD  180 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEEEeCcCCcccccccCCcccCccccChhHhcCCCCCCccc
Confidence            9999999999999999999999999    999999999999999999987666556678999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|..||.+.+      ..+....+.........                            +.     
T Consensus       181 vwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~----------------------------~~-----  221 (333)
T cd05600         181 YWSLGCMLYEFLCGFPPFSGST------PNETWENLKYWKETLQR----------------------------PV-----  221 (333)
T ss_pred             eecchHHHhhhhhCCCCCCCCC------HHHHHHHHHhccccccC----------------------------CC-----
Confidence            9999999999999999997543      22222222211000000                            00     


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ........+.++.+||.+||..+|.+|+|+.++++||||...
T Consensus       222 -~~~~~~~~s~~~~~li~~~l~~~~~rr~s~~~ll~h~~~~~~  263 (333)
T cd05600         222 -YDDPRFNLSDEAWDLITKLINDPSRRFGSLEDIKNHPFFKEV  263 (333)
T ss_pred             -CCccccccCHHHHHHHHHHhhChhhhcCCHHHHHhCcccCCC
Confidence             000002346788999999999999999999999999999864

Serine/Threonine Kinases (STKs), ROCK- and NDR-like subfamily, fungal Sid2p- and Dbf2p-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sid2p- and Dbf2p-like group is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group contains fungal kinases including Schizosaccharomyces pombe Sid2p and Saccharomyces cerevisiae Dbf2p. Group members show similarity to NDR kinases in that they contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Sid2p plays a crucial role in the septum initiation network (SIN) and in the initiation of cytokinesis.

>KOG0610 consensus Putative serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.5e-34  Score=256.23  Aligned_cols=228  Identities=18%  Similarity=0.178  Sum_probs=176.1

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhh-ccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQG-CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNESS   99 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~~   99 (358)
                      ..-|.|++....... +++++|..-....+ ++.|+.+..++...++ +...++|||||.||+|..+...  ..++++..
T Consensus       103 ~~fAmKVmdK~~l~~-rkKl~Ra~tE~eIL~~lDHPFlPTLYa~fet-~~~~cl~meyCpGGdL~~LrqkQp~~~fse~~  180 (459)
T KOG0610|consen  103 CLFAMKVMDKESLAS-RKKLKRAQTEREILSLLDHPFLPTLYASFET-DKYSCLVMEYCPGGDLHSLRQKQPGKRFSESA  180 (459)
T ss_pred             ceEEEEEecHHHHhh-hhHHHHHHHHHHHHHhcCCCccchhhheeec-cceeEEEEecCCCccHHHHHhhCCCCccchhh
Confidence            345889888876655 44444443333222 2677777777766654 5578899999999999987764  45789999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC------------------------------
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH------------------------------  145 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~------------------------------  145 (358)
                      ++.++..++-++.|+|-.|||-|    +||||.++|+|.|+||.++....                              
T Consensus       181 aRFYaAEvl~ALEYLHmlGivYRDLKPENILvredGHIMLsDFDLS~~~~~~Pt~~~s~~~~~~~~~~~~~~~~~s~f~~  260 (459)
T KOG0610|consen  181 ARFYAAEVLLALEYLHMLGIVYRDLKPENILVREDGHIMLSDFDLSLRCPVSPTLVKSSSPRSSGSQPSCRSRQPSCFSP  260 (459)
T ss_pred             HHHHHHHHHHHHHHHHhhceeeccCCcceeEEecCCcEEeeeccccccCCCCCeeeccCCCCCCCCCccccccccccccc
Confidence            99999999999999999999966    99999999999999999883210                              


Q ss_pred             ------C-----------------------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCC
Q 045353          146 ------K-----------------------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSG  196 (358)
Q Consensus       146 ------~-----------------------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~  196 (358)
                            .                       ...+.+||-.|.|||++.|.+.+.++|+|+|||++|||+.|..||.|.+.
T Consensus       261 r~~~~~~~~~k~~~~~~~~~p~~~aep~~~RSnSFVGThEYlAPEvI~G~GHgsAVDWWtfGIflYEmLyG~TPFKG~~~  340 (459)
T KOG0610|consen  261 RCLSSSKKRKKKDESASRSLPELVAEPTGARSNSFVGTHEYLAPEVIRGEGHGSAVDWWTFGIFLYEMLYGTTPFKGSNN  340 (459)
T ss_pred             chhccccccccccccccccchhhhcCCCCccccccccccccccceeeecCCCCchhhHHHHHHHHHHHHhCCCCcCCCCc
Confidence                  0                       01123899999999999999999999999999999999999999988763


Q ss_pred             CCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhcccc
Q 045353          197 DNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDF  276 (358)
Q Consensus       197 ~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~  276 (358)
                            .+.+..   +++.++.                                     +...+.++..++|||+++|.+
T Consensus       341 ------~~Tl~N---Iv~~~l~-------------------------------------Fp~~~~vs~~akDLIr~LLvK  374 (459)
T KOG0610|consen  341 ------KETLRN---IVGQPLK-------------------------------------FPEEPEVSSAAKDLIRKLLVK  374 (459)
T ss_pred             ------hhhHHH---HhcCCCc-------------------------------------CCCCCcchhHHHHHHHHHhcc
Confidence                  223222   2222211                                     112235578999999999999


Q ss_pred             CCCCCCC----HHHHhcCcCcCCCCC
Q 045353          277 VPEKRPT----AAQCLSHPWMSAGPQ  298 (358)
Q Consensus       277 dP~~R~t----a~elL~hpwf~~~~~  298 (358)
                      ||.+|+.    |.||.+||||.+-.+
T Consensus       375 dP~kRlg~~rGA~eIK~HpFF~gVnW  400 (459)
T KOG0610|consen  375 DPSKRLGSKRGAAEIKRHPFFEGVNW  400 (459)
T ss_pred             ChhhhhccccchHHhhcCccccCCCh
Confidence            9999998    999999999998544

>cd05594 STKc_PKB_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B alpha

Probab=100.00  E-value=1.6e-35  Score=272.27  Aligned_cols=226  Identities=16%  Similarity=0.195  Sum_probs=173.2

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.......  ...++.++.+....  ..|++++....... ....+|+||||++||+|..++.....+.+
T Consensus        18 ~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~--~~hp~i~~~~~~~~-~~~~~~lv~E~~~~~~L~~~l~~~~~l~~   94 (325)
T cd05594          18 ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN--SRHPFLTALKYSFQ-THDRLCFVMEYANGGELFFHLSRERVFSE   94 (325)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh--CCCCCCCceEEEEE-cCCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            467788999887654322  22333444443333  35666666554433 34578999999999999998887778889


Q ss_pred             hhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.|++.++.|+|+ .+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++
T Consensus        95 ~~~~~~~~qi~~aL~~lH~~~~ivHrDikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (325)
T cd05594          95 DRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYG  174 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCEEecCCCCCeEEECCCCCEEEecCCCCeecCCCCcccccccCCcccCCHHHHccCCCC
Confidence            9999999999999999997 799998    99999999999999999986532   223345799999999999998999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+.+      .......+.                                       
T Consensus       175 ~~~DiwslG~il~el~tG~~Pf~~~~------~~~~~~~i~---------------------------------------  209 (325)
T cd05594         175 RAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELIL---------------------------------------  209 (325)
T ss_pred             CccccccccceeeeeccCCCCCCCCC------HHHHHHHHh---------------------------------------
Confidence            99999999999999999999996543      111111110                                       


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                         .....++...++++.+||.+||+.||++|+     ++.++++||||...
T Consensus       210 ---~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~il~h~~~~~~  258 (325)
T cd05594         210 ---MEEIRFPRTLSPEAKSLLSGLLKKDPKQRLGGGPDDAKEIMQHKFFAGI  258 (325)
T ss_pred             ---cCCCCCCCCCCHHHHHHHHHHhhcCHHHhCCCCCCCHHHHhcCCCcCCC
Confidence               011123344577899999999999999997     99999999999863

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, alpha (or Akt1) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-alpha is predominantly expressed in endothelial cells. It is critical for the regulation of angiogenesis and the maintenance of vascular integrity. It also plays a role in adipocyte differentiation. Mice deficien

>KOG4717 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=1e-34  Score=263.16  Aligned_cols=224  Identities=19%  Similarity=0.258  Sum_probs=184.5

Q ss_pred             ccCcccccccccC----ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccc
Q 045353           20 ESSASKENKSLYG----DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~   94 (358)
                      =+|.-||+|+...    .++..+-....|..    . ...|++||+++.+-.+ ...+|+|.|+-.||+|+|++-. ...
T Consensus        41 FTGekVAVKviDKTKlD~~st~hlfqEVRCM----K-LVQHpNiVRLYEViDT-QTKlyLiLELGD~GDl~DyImKHe~G  114 (864)
T KOG4717|consen   41 FTGEKVAVKVIDKTKLDTLSTGHLFQEVRCM----K-LVQHPNIVRLYEVIDT-QTKLYLILELGDGGDLFDYIMKHEEG  114 (864)
T ss_pred             cccceeEEEEecccccchhhhhHHHHHHHHH----H-HhcCcCeeeeeehhcc-cceEEEEEEecCCchHHHHHHhhhcc
Confidence            3677888888876    33333333333332    2 2578899999887664 5689999999999999999864 446


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceec--CCCCCCCccCCCcchhHHHhCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWT--HKQFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~--~~~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +.+.-+..++.||+.++.|+|...++||    +||.+-+ -|-|||+|||++-.+  +..+++.||+..|-|||+++|..
T Consensus       115 l~E~La~kYF~QI~~AI~YCHqLHVVHRDLKPENVVFFEKlGlVKLTDFGFSNkf~PG~kL~TsCGSLAYSAPEILLGDs  194 (864)
T KOG4717|consen  115 LNEDLAKKYFAQIVHAISYCHQLHVVHRDLKPENVVFFEKLGLVKLTDFGFSNKFQPGKKLTTSCGSLAYSAPEILLGDS  194 (864)
T ss_pred             ccHHHHHHHHHHHHHHHHHHhhhhhhcccCCcceeEEeeecCceEeeeccccccCCCcchhhcccchhhccCchhhhcCc
Confidence            8888999999999999999999999999    8988754 589999999999443  45688899999999999999999


Q ss_pred             C-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 Y-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      | .+++||||||||||-|++|++||...+      +.+.+..|+                                    
T Consensus       195 YDAPAVDiWSLGVILyMLVCGq~PFqeAN------DSETLTmIm------------------------------------  232 (864)
T KOG4717|consen  195 YDAPAVDIWSLGVILYMLVCGQPPFQEAN------DSETLTMIM------------------------------------  232 (864)
T ss_pred             cCCcchhhhHHHHHHHHHHhCCCcccccc------chhhhhhhh------------------------------------
Confidence            8 567999999999999999999997655      455555544                                    


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                            .+.|..|..++.++++||.+||+.||.+|.|.+|+..|+|++...
T Consensus       233 ------DCKYtvPshvS~eCrdLI~sMLvRdPkkRAslEeI~s~~Wlq~~D  277 (864)
T KOG4717|consen  233 ------DCKYTVPSHVSKECRDLIQSMLVRDPKKRASLEEIVSTSWLQAGD  277 (864)
T ss_pred             ------cccccCchhhhHHHHHHHHHHHhcCchhhccHHHHhccccccCCC
Confidence                  346677888899999999999999999999999999999999753

>cd05587 STKc_cPKC Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C

Probab=100.00  E-value=5.2e-35  Score=268.72  Aligned_cols=226  Identities=16%  Similarity=0.166  Sum_probs=170.7

Q ss_pred             cCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+|+|++......  .....+.++.+..... .++..++...... .....+|+||||++||+|.+++.....+.+.
T Consensus        24 ~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~~i~~~~~~~-~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~  101 (324)
T cd05587          24 TDELYAIKILKKDVIIQDDDVECTMVEKRVLALP-GKPPFLTQLHSCF-QTMDRLYFVMEYVNGGDLMYHIQQVGKFKEP  101 (324)
T ss_pred             CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhc-CCCCceeeeEEEE-EcCCEEEEEEcCCCCCcHHHHHHHcCCCCHH
Confidence            4567899988765432  2233444444443332 2333344443332 2345789999999999999998877778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.+
T Consensus       102 ~~~~~~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  181 (324)
T cd05587         102 HAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDAEGHIKIADFGMCKENIFGGKTTRTFCGTPDYIAPEIIAYQPYGKS  181 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEEcCCCCEEEeecCcceecCCCCCceeeecCCccccChhhhcCCCCCcc
Confidence            999999999999999999999999    99999999999999999986432   22334579999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|+.||.+.+      .......+...                                       
T Consensus       182 ~DiwslGvil~elltG~~pf~~~~------~~~~~~~i~~~---------------------------------------  216 (324)
T cd05587         182 VDWWAFGVLLYEMLAGQPPFDGED------EDELFQSIMEH---------------------------------------  216 (324)
T ss_pred             cchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHcC---------------------------------------
Confidence            999999999999999999997543      22222222110                                       


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCH-----HHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTA-----AQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta-----~elL~hpwf~~~  296 (358)
                         ...++...+..+.+||.+||..||.+|+++     .++++||||...
T Consensus       217 ---~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~hp~~~~~  263 (324)
T cd05587         217 ---NVSYPKSLSKEAVSICKGLLTKHPAKRLGCGPTGERDIREHAFFRRI  263 (324)
T ss_pred             ---CCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence               112233456788999999999999999986     899999999863

Serine/Threonine Kinases (STKs), Classical (or Conventional) Protein Kinase C (cPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. cPKCs contain a calcium-binding C2 region in their regulatory

>cd05591 STKc_nPKC_epsilon Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C epsilon

Probab=100.00  E-value=4.5e-35  Score=268.79  Aligned_cols=226  Identities=19%  Similarity=0.224  Sum_probs=174.0

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  .....+..+.+..... ..+++++....... .....|+||||++||+|.+++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~-~~hp~i~~~~~~~~-~~~~~~lv~E~~~~~~L~~~l~~~~~~~~   95 (321)
T cd05591          18 GTDEVYAIKVLKKDVILQDDDVDCTMTEKRILALA-AKHPFLTALHCCFQ-TKDRLFFVMEYVNGGDLMFQIQRSRKFDE   95 (321)
T ss_pred             CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhc-cCCCCccceeeEEE-cCCeEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            34667899988765432  2233344444433332 35666666655443 34578999999999999998887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~aL~~LH~~~ivHrDikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (321)
T cd05591          96 PRSRFYAAEVTLALMFLHRHGVIYRDLKLDNILLDAEGHCKLADFGMCKEGILNGVTTTTFCGTPDYIAPEILQELEYGP  175 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeecccceecccCCccccccccCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    89999999999999999986532   2234457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|+.||.+.+      ....+..+..                                       
T Consensus       176 ~~DvwslG~il~el~tg~~Pf~~~~------~~~~~~~i~~---------------------------------------  210 (321)
T cd05591         176 SVDWWALGVLMYEMMAGQPPFEADN------EDDLFESILH---------------------------------------  210 (321)
T ss_pred             ccceechhHHHHHHhcCCCCCCCCC------HHHHHHHHHc---------------------------------------
Confidence            9999999999999999999997543      2222222211                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-------CHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-------TAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-------ta~elL~hpwf~~  295 (358)
                         ....++...+.++.+||.+||+.||++|+       ++.++++||||..
T Consensus       211 ---~~~~~p~~~~~~~~~ll~~~L~~dp~~R~~~~~~~~~~~~~~~hp~~~~  259 (321)
T cd05591         211 ---DDVLYPVWLSKEAVSILKAFMTKNPNKRLGCVASQGGEDAIKQHPFFKE  259 (321)
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCCHHHHhcCCccCC
Confidence               01122333467899999999999999999       9999999999976

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), epsilon isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-epsilon has been shown to behave as an oncoprotein. Its overexpression contributes to

>KOG0669 consensus Cyclin T-dependent kinase CDK9 [Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=1.2e-34  Score=241.45  Aligned_cols=243  Identities=22%  Similarity=0.238  Sum_probs=181.2

Q ss_pred             hHHHHHhhhhccCCC-ccccccCCCCCCC----CCCCcccccCCCCCccccccc-ccccChhhhhHHHHhhhhccccccC
Q 045353           43 KKKAKKAAQGCAGTE-AFDESEADSKPSS----PDNFSVDTIPNGVSVEERQND-SVVNNESSRDNEVKNTSQGVKGHRR  116 (358)
Q Consensus        43 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~h~  116 (358)
                      .|+.+...++-+.+. +++++...-.++.    ..+|+|+.+|+. +|+-++.+ .+.++..+|..+++++..|+.|+|.
T Consensus        64 lreikiL~~lkHenv~nliEic~tk~Tp~~r~r~t~ylVf~~ceh-DLaGlLsn~~vr~sls~Ikk~Mk~Lm~GL~~iHr  142 (376)
T KOG0669|consen   64 LREIKILQLLKHENVVNLIEICRTKATPTNRDRATFYLVFDFCEH-DLAGLLSNRKVRFSLSEIKKVMKGLMNGLYYIHR  142 (376)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHhhccCCcccccceeeeeHHHhhh-hHHHHhcCccccccHHHHHHHHHHHHHHHHHHHH
Confidence            455555555432332 4555544444433    459999999986 45555554 4788999999999999999999999


Q ss_pred             CCCCCc----ccccccCCCcEEEEecCCceecC-------CCCCCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhh
Q 045353          117 PSRATR----KNLLAAVDVQCKLVDFGNACWTH-------KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFEL  184 (358)
Q Consensus       117 ~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-------~~~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~el  184 (358)
                      .+|+||    +|+||+.+|.+||+|||+|+...       ..++..+-|.+|++||.++|.. |+++.|||..|||+.+|
T Consensus       143 ~kilHRDmKaaNvLIt~dgilklADFGlar~fs~~~n~~kprytnrvvTLwYrppEllLG~r~yg~~iDiWgAgCimaeM  222 (376)
T KOG0669|consen  143 NKILHRDMKAANVLITKDGILKLADFGLARAFSTSKNVVKPRYTNRVVTLWYRPPELLLGDREYGPPIDIWGAGCIMAEM  222 (376)
T ss_pred             hhHHhhcccHhhEEEcCCceEEeeccccccceecccccCCCCcccceeeeecCCHHHhhcccccCCcchhHhHHHHHHHH
Confidence            999999    89999999999999999996543       3467778899999999999965 99999999999999999


Q ss_pred             hcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHH
Q 045353          185 ATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAK  264 (358)
Q Consensus       185 l~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (358)
                      +++.+.|.+.+      +..++..|..++|....+.|........+ ...+.    ..+......++.....++  .-.+
T Consensus       223 wtrspimqgnt------eqqql~~Is~LcGs~tkevWP~~d~lpL~-~sie~----ePl~~~~~rkv~n~~kp~--~kd~  289 (376)
T KOG0669|consen  223 WTRSPIMQGNT------EQQQLHLISQLCGSITKEVWPNVDNLPLY-QSIEL----EPLPKGQKRKVKNRLKPY--VKDD  289 (376)
T ss_pred             HccCccccCCh------HHHHHHHHHHHhccCCcccCCCcccchHH-HhccC----CCCCcchhhhhhhhcccc--cCCh
Confidence            99999999887      78999999999999888877654332222 11100    000000011111111111  1245


Q ss_pred             HHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          265 DMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       265 ~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      ++.+|+.+||.+||.+|++++++|+|.||...+.+
T Consensus       290 ~a~dLle~ll~~DP~kR~~ad~alnh~~F~kdp~p  324 (376)
T KOG0669|consen  290 EALDLLEKLLKLDPTKRIDADQALNHDFFWKDPMP  324 (376)
T ss_pred             hHHHHHHHHhccCcccCcchHhhhchhhhhcCCcc
Confidence            78899999999999999999999999999987654

>PHA03212 serine/threonine kinase US3; Provisional

Probab=100.00  E-value=4.1e-34  Score=268.70  Aligned_cols=260  Identities=13%  Similarity=0.128  Sum_probs=185.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .++..||+|...       +..+.++++...+  +.|++++.+..... .....++|||++. ++|..++.....+.+..
T Consensus       115 ~~~~~vaiK~~~-------~~~~~~E~~il~~--l~HpnIv~~~~~~~-~~~~~~lv~e~~~-~~L~~~l~~~~~l~~~~  183 (391)
T PHA03212        115 KTCEHVVIKAGQ-------RGGTATEAHILRA--INHPSIIQLKGTFT-YNKFTCLILPRYK-TDLYCYLAAKRNIAICD  183 (391)
T ss_pred             CCCCEEEEechh-------hhhhHHHHHHHHh--CCCCCCCCEeEEEE-ECCeeEEEEecCC-CCHHHHHHhcCCCCHHH
Confidence            456677888532       3445666666665  46778887765543 3456789999996 67887777666778889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC----CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH----KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~----~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|....    ......+||+.|+|||++.+..|+.+
T Consensus       184 ~~~i~~qi~~aL~ylH~~~IvHrDiKP~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  263 (391)
T PHA03212        184 ILAIERSVLRAIQYLHENRIIHRDIKAENIFINHPGDVCLGDFGAACFPVDINANKYYGWAGTIATNAPELLARDPYGPA  263 (391)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCChHhEEEcCCCCEEEEeCCcccccccccccccccccCccCCCChhhhcCCCCCcH
Confidence            99999999999999999999999    99999999999999999996532    22334589999999999999899999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCC-CCCCcHHHHHHHHHHhCCCchhhhcCCCCC-hhhh-hccCCchhhhhccCCcc
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGD-NYDKDEDHLALMMELLGMMPRKIALGGRYS-RDFF-NRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~-~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~  248 (358)
                      +|||||||++|+|++|..||...... .......++..+...+|..|.......... ...+ ......      ...+.
T Consensus       264 ~DiwSlGvil~elltg~~p~~~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~------~~~~~  337 (391)
T PHA03212        264 VDIWSAGIVLFEMATCHDSLFEKDGLDGDCDSDRQIKLIIRRSGTHPNEFPIDAQANLDEIYIGLAKKS------SRKPG  337 (391)
T ss_pred             HHHHHHHHHHHHHHHCCCCcCCcccccccCchhHHHHHHHHHhcCChhhcCcchhHHHHHHHHHHHhcc------CCCCC
Confidence            99999999999999999877544321 222345678888888888775432211100 0000 000000      00000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      .+.   .+......+.++.+||.+||++||.+||||+|+|+||||...+.+
T Consensus       338 ~~~---~~~~~~~~~~~l~~Li~~mL~~dP~~Rpta~elL~hp~f~~~~~~  385 (391)
T PHA03212        338 SRP---LWTNLYELPIDLEYLICKMLAFDAHHRPSAEALLDFAAFQDIPDP  385 (391)
T ss_pred             CCC---CHHHHhhhhhhHHHHHHHHhcCChhhCCCHHHHhcChhhccCCCC
Confidence            000   000011245678999999999999999999999999999875544

>cd05595 STKc_PKB_beta Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase B beta

Probab=100.00  E-value=3.2e-35  Score=269.96  Aligned_cols=226  Identities=16%  Similarity=0.196  Sum_probs=176.2

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+......  .....+.++.+....  ..|++++....... ....+|+||||++||+|..++.....+++
T Consensus        18 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~i~~~~~~~~-~~~~~~lv~E~~~~~~L~~~l~~~~~~~~   94 (323)
T cd05595          18 ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN--TRHPFLTALKYAFQ-THDRLCFVMEYANGGELFFHLSRERVFTE   94 (323)
T ss_pred             CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh--CCCCCCcceeeEEe-cCCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            46778999998765432  233444455555444  35667776655443 34578999999999999998887778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        95 ~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  174 (323)
T cd05595          95 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  174 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEEcCCCCEEecccHHhccccCCCCccccccCCcCcCCcccccCCCCCc
Confidence            9999999999999999999999999    99999999999999999986532   2233457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|+.||...+      .......+.                                        
T Consensus       175 ~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~~~----------------------------------------  208 (323)
T cd05595         175 AVDWWGLGVVMYEMMCGRLPFYNQD------HERLFELIL----------------------------------------  208 (323)
T ss_pred             hhchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHh----------------------------------------
Confidence            9999999999999999999996443      111111111                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                        .....++...++.+.+||.+||..||.+|+     ++.++++||||...
T Consensus       209 --~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~l~h~~~~~~  257 (323)
T cd05595         209 --MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  257 (323)
T ss_pred             --cCCCCCCCCCCHHHHHHHHHHccCCHHHhCCCCCCCHHHHHcCCCcCCC
Confidence              011123445578899999999999999998     89999999999864

Serine/Threonine Kinases (STKs), Protein Kinase B (PKB) or Akt subfamily, beta (or Akt2) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three PKB isoforms from different genes, PKB-alpha (or Akt1), PKB-beta (or Akt2), and PKB-gamma (or Akt3). PKB contains an N-terminal pleckstrin homology (PH) domain and a C-terminal catalytic domain. PKB-beta is the predominant PKB isoform expressed in insulin-responsive tissues. It plays a critical role in the regulation of glucose homeostasis. It is also implicated in muscle cell differentiation. Mice deficient in

>cd05628 STKc_NDR1 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 1

Probab=100.00  E-value=1.7e-34  Score=269.48  Aligned_cols=229  Identities=16%  Similarity=0.166  Sum_probs=170.5

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  .......++++......  ..+.+++....... ....+|+|||||+||+|.+++.....+++
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~--~~~~~iv~~~~~~~-~~~~~~lv~E~~~gg~L~~~l~~~~~l~~  100 (363)
T cd05628          24 DTGHVYAMKILRKADMLEKEQVGHIRAERDILVE--ADSLWVVKMFYSFQ-DKLNLYLIMEFLPGGDMMTLLMKKDTLTE  100 (363)
T ss_pred             CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHh--CCCCCcceEEEEEe-cCCeEEEEEcCCCCCcHHHHHHhcCCCCH
Confidence            356788999987532  22333455556555444  35666666655443 34578999999999999999988788899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------------------  147 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------------------  147 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....                          
T Consensus       101 ~~~~~~~~qi~~aL~~lH~~givHrDlKp~NILi~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (363)
T cd05628         101 EETQFYIAETVLAIDSIHQLGFIHRDIKPDNLLLDSKGHVKLSDFGLCTGLKKAHRTEFYRNLNHSLPSDFTFQNMNSKR  180 (363)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCCEEEeeccCccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999    9999999999999999998643210                          


Q ss_pred             ------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCC
Q 045353          148 ------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM  215 (358)
Q Consensus       148 ------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  215 (358)
                                  ....+||+.|+|||++.+..|+.++|||||||++|+|++|..||.+.+      .......+......
T Consensus       181 ~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~~~~~~~~~DvwSlGvil~ell~G~~Pf~~~~------~~~~~~~i~~~~~~  254 (363)
T cd05628         181 KAETWKRNRRQLAFSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET------PQETYKKVMNWKET  254 (363)
T ss_pred             ccchhhhccccccccccCCccccCHHHHcCCCCCCchhhhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHcCcCc
Confidence                        123489999999999999999999999999999999999999997543      22222222211000


Q ss_pred             CchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCC---CCCCHHHHhcCcC
Q 045353          216 MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPE---KRPTAAQCLSHPW  292 (358)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~---~R~ta~elL~hpw  292 (358)
                      .                                      .++.....+.++.+||.+|+. +|.   .||+++|+++|||
T Consensus       255 ~--------------------------------------~~p~~~~~s~~~~~li~~l~~-~~~~r~~r~~~~ei~~hp~  295 (363)
T cd05628         255 L--------------------------------------IFPPEVPISEKAKDLILRFCC-EWEHRIGAPGVEEIKTNPF  295 (363)
T ss_pred             c--------------------------------------cCCCcCCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhCCCC
Confidence            0                                      000011246788899999775 455   4589999999999


Q ss_pred             cCCC
Q 045353          293 MSAG  296 (358)
Q Consensus       293 f~~~  296 (358)
                      |.+.
T Consensus       296 f~~~  299 (363)
T cd05628         296 FEGV  299 (363)
T ss_pred             CCCC
Confidence            9864

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. NDR1 is highly expressed in thymus, mus

>cd05616 STKc_cPKC_beta Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C beta

Probab=100.00  E-value=9.8e-35  Score=266.79  Aligned_cols=226  Identities=15%  Similarity=0.154  Sum_probs=170.5

Q ss_pred             cCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+|+|.+........  ...+..+...... ...+++++...... .....+|+||||++||+|.+++.....+.+.
T Consensus        24 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~~i~~~~~~~-~~~~~~~lv~E~~~~g~L~~~~~~~~~~~~~  101 (323)
T cd05616          24 TDELYAIKILKKDVVIQDDDVECTMVEKRVLAL-SGKPPFLTQLHSCF-QTMDRLYFVMEYVNGGDLMYQIQQVGRFKEP  101 (323)
T ss_pred             CCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh-ccCCCeEeeEEEEE-ecCCEEEEEEcCCCCCCHHHHHHHcCCCCHH
Confidence            566789998876543222  2223333332222 22344444443332 2345789999999999999988877778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.++.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.+
T Consensus       102 ~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  181 (323)
T cd05616         102 HAVFYAAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENMWDGVTTKTFCGTPDYIAPEIIAYQPYGKS  181 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEecCCCHHHeEECCCCcEEEccCCCceecCCCCCccccCCCChhhcCHHHhcCCCCCCc
Confidence            999999999999999999999999    99999999999999999997532   22345579999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|+.||.+.+      .......+...                                       
T Consensus       182 ~DiwSlGvil~elltg~~Pf~~~~------~~~~~~~i~~~---------------------------------------  216 (323)
T cd05616         182 VDWWAFGVLLYEMLAGQAPFEGED------EDELFQSIMEH---------------------------------------  216 (323)
T ss_pred             cchhchhHHHHHHHhCCCCCCCCC------HHHHHHHHHhC---------------------------------------
Confidence            999999999999999999997543      22222222211                                       


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                         ...++...+.++.+|+.+||+.||.+|++     ..++++||||...
T Consensus       217 ---~~~~p~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~~~~~  263 (323)
T cd05616         217 ---NVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  263 (323)
T ss_pred             ---CCCCCCcCCHHHHHHHHHHcccCHHhcCCCCCCCHHHHhcCCCcCCC
Confidence               11233445778999999999999999998     4899999999863

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, beta isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, and

>cd07853 STKc_NLK Catalytic domain of the Serine/Threonine Kinase, Nemo-Like Kinase

Probab=100.00  E-value=5.6e-34  Score=266.80  Aligned_cols=258  Identities=23%  Similarity=0.335  Sum_probs=189.8

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCC----CCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS----PDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|.+...... ...+++.++.+....  +.|++++...+......    ...|+||||+. ++|.+++.....
T Consensus        23 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~   99 (372)
T cd07853          23 RDGKRVALKKMPNVFQNLVSCKRVFRELKMLCF--FKHDNVLSALDILQPPHIDPFEEIYVVTELMQ-SDLHKIIVSPQP   99 (372)
T ss_pred             CCCCEEEEEeccccccchHHHHHHHHHHHHHHh--CCCCCcCCHhheecCCCccccceEEEEeeccc-cCHHHHHhcCCC
Confidence            46788999988765433 233556666666555  35667766665544332    36899999997 467777766677


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +.+..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+|.....    ......+|+.|+|||++.+.
T Consensus       100 l~~~~~~~~~~qi~~aL~~LH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  179 (372)
T cd07853         100 LSSDHVKVFLYQILRGLKYLHSAGILHRDIKPGNLLVNSNCVLKICDFGLARVEEPDESKHMTQEVVTQYYRAPEILMGS  179 (372)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHHEEECCCCCEEeccccceeecccCccccCCCCCcCCCcCCHHHHcCC
Confidence            8899999999999999999999999999    899999999999999999976432    23345789999999999885


Q ss_pred             C-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 K-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      . |+.++||||+||++|+|++|++||.+.+      ..+++..+.+.+|.++.............        .+.....
T Consensus       180 ~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~g~~~~~~~~~~~~~~~~--------~~~~~~~  245 (372)
T cd07853         180 RHYTSAVDIWSVGCIFAELLGRRILFQAQS------PIQQLDLITDLLGTPSLEAMRSACEGARA--------HILRGPH  245 (372)
T ss_pred             CCCCcHHHHHhHHHHHHHHHcCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHHhhHHHHH--------HHHhCCC
Confidence            4 8999999999999999999999997655      57788889999988775433211100000        0000000


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .+  ......+......+.++.+||.+||++||++|||+.|+|+||||...
T Consensus       246 ~~--~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  294 (372)
T cd07853         246 KP--PSLPVLYTLSSQATHEAVHLLCRMLVFDPDKRISAADALAHPYLDEG  294 (372)
T ss_pred             CC--CchHHhcccCCCCCHHHHHHHHHhCCCChhhCcCHHHHhcCHhhCCC
Confidence            00  00111122334457789999999999999999999999999999874

Serine/Threonine Kinases (STKs), Nemo-Like Kinase (NLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mitogen-activated protein kinases (MAPKs) are important mediators of cellular responses to extracellular signals. NLK is an atypical MAPK that is not regulated by a MAPK kinase. It functions downstream of the MAPK kinase kinase Tak1, which also plays a role in activating the JNK and p38 MAPKs. The Tak1/NLK pathways are regulated by Wnts, a family of secreted proteins that is critical in the control of asymmetric division and cell polarity. NLK can phosphorylate transcription

>cd07862 STKc_CDK6 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 6

Probab=100.00  E-value=4.9e-34  Score=258.00  Aligned_cols=250  Identities=22%  Similarity=0.218  Sum_probs=180.3

Q ss_pred             cCcccccccccCccchh-hhHHhhHHHHHhhhhc-cCCCccccccCCC----CCCCCCCCcccccCCCCCccccccc--c
Q 045353           21 SSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGC-AGTEAFDESEADS----KPSSPDNFSVDTIPNGVSVEERQND--S   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~~iv~e~~~gg~L~~~~~~--~   92 (358)
                      .|..+|+|.+....... ....+.++......+. ..|++++...+..    ......+++||||+. ++|.+++..  .
T Consensus        26 ~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~hpniv~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~  104 (290)
T cd07862          26 GGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVPE  104 (290)
T ss_pred             CCeEEEEEEEecccCCCCchHHHHHHHHHHHhhcccCCCCcceEEEEEecccCCCCCcEEEEEccCC-CCHHHHHHhCCC
Confidence            45678888876544332 3334445544443321 3567777765543    223466899999997 477777753  2


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ..+++..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||++......  .....||+.|+|||++.+.
T Consensus       105 ~~~~~~~~~~i~~qi~~aL~~lH~~~iiH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  184 (290)
T cd07862         105 PGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQS  184 (290)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEcCCCCEEEccccceEeccCCcccccccccccccChHHHhCC
Confidence            346788899999999999999999999999    9999999999999999999765432  3455789999999999998


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC-CChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR-YSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .++.++||||+||++|+|++|.+||.+.+      +.+.+..+.+..+.+.+..+.... .....+..         ...
T Consensus       185 ~~~~~~DiwslG~il~el~~g~~~f~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  249 (290)
T cd07862         185 SYATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHS---------KSA  249 (290)
T ss_pred             CCCCccchHHHHHHHHHHHcCCCCcCCCC------HHHHHHHHHHHhCCCChhhchhhhcccchhccC---------CCC
Confidence            89999999999999999999999998655      567788888877766543321110 00000000         000


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      .+.       ....+..+..+.+||.+||+.||++|||+.|+|+||||
T Consensus       250 ~~~-------~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~hp~f  290 (290)
T cd07862         250 QPI-------EKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF  290 (290)
T ss_pred             CCH-------HHHccCCCHHHHHHHHHHhccCchhcCCHHHHhcCCCC
Confidence            000       01122356788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 6 (CDK6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK6 is regulated by D-type cyclins and INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein, implicating it to function in regulating the early G1 phase of the cell cycle. It is expressed ubiquitously and is localized in the cytopla

>cd05620 STKc_nPKC_delta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C delta

Probab=100.00  E-value=1.1e-34  Score=265.59  Aligned_cols=227  Identities=18%  Similarity=0.204  Sum_probs=173.5

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.....  ........++.+.... ...+++++....... .....|+||||+.||+|..++.....+.+
T Consensus        18 ~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~~~~i~~~~~~~~-~~~~~~lv~E~~~~g~L~~~i~~~~~~~~   95 (316)
T cd05620          18 GKGEYFAVKALKKDVVLIDDDVECTMVEKRVLAL-AWENPFLTHLYCTFQ-TKEHLFFVMEFLNGGDLMFHIQDKGRFDL   95 (316)
T ss_pred             CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHh-ccCCCCccCeeEEEE-eCCEEEEEECCCCCCcHHHHHHHcCCCCH
Confidence            3577889998876543  2233333444333332 235666666655443 34578999999999999998887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++...   .......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (316)
T cd05620          96 YRATFYAAEIVCGLQFLHSKGIIYRDLKLDNVMLDRDGHIKIADFGMCKENVFGDNRASTFCGTPDYIAPEILQGLKYTF  175 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEeCccCCCeecccCCCceeccCCCcCccCHHHHcCCCCCc
Confidence            9999999999999999999999999    9999999999999999998643   22344568999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||.+.+      .......+..                                       
T Consensus       176 ~~DiwslGvil~el~~g~~Pf~~~~------~~~~~~~~~~---------------------------------------  210 (316)
T cd05620         176 SVDWWSFGVLLYEMLIGQSPFHGDD------EDELFESIRV---------------------------------------  210 (316)
T ss_pred             ccchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHh---------------------------------------
Confidence            9999999999999999999996543      2222221110                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH-HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA-AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta-~elL~hpwf~~~  296 (358)
                         ....++...+.++.+||.+||+.||++|+|+ +++++||||...
T Consensus       211 ---~~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~~~~~~h~~f~~~  254 (316)
T cd05620         211 ---DTPHYPRWITKESKDILEKLFERDPTRRLGVVGNIRGHPFFKTI  254 (316)
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCCCcCCC
Confidence               0111223346788999999999999999997 589999999864

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), delta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-delta plays a role in cell cycle regulation and programmed cell death in many cell types. I

>KOG0690 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=100.00  E-value=5.5e-35  Score=251.58  Aligned_cols=193  Identities=19%  Similarity=0.210  Sum_probs=164.5

Q ss_pred             CCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC
Q 045353           55 GTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD  130 (358)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~  130 (358)
                      .|+.+..+.....+ ...++.||||.+||.|+..+.....+++...+.+-..|+.++.|+|+.+|+-|    +|+|+|.+
T Consensus       226 ~HPFLt~LKYsFQt-~drlCFVMeyanGGeLf~HLsrer~FsE~RtRFYGaEIvsAL~YLHs~~ivYRDlKLENLlLDkD  304 (516)
T KOG0690|consen  226 RHPFLTSLKYSFQT-QDRLCFVMEYANGGELFFHLSRERVFSEDRTRFYGAEIVSALGYLHSRNIVYRDLKLENLLLDKD  304 (516)
T ss_pred             cCcHHHHhhhhhcc-CceEEEEEEEccCceEeeehhhhhcccchhhhhhhHHHHHHhhhhhhCCeeeeechhhhheeccC
Confidence            45555555555444 45678899999999999999999999999999999999999999999999988    99999999


Q ss_pred             CcEEEEecCCcee---cCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHH
Q 045353          131 VQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLA  207 (358)
Q Consensus       131 ~~vkL~DFG~a~~---~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~  207 (358)
                      |++||+|||+++.   .+....+.||||.|.|||++....|+.++|+|.+||+||||++|+.||+....      ...  
T Consensus       305 GHIKitDFGLCKE~I~~g~t~kTFCGTPEYLAPEVleDnDYgraVDWWG~GVVMYEMmCGRLPFyn~dh------~kL--  376 (516)
T KOG0690|consen  305 GHIKITDFGLCKEEIKYGDTTKTFCGTPEYLAPEVLEDNDYGRAVDWWGVGVVMYEMMCGRLPFYNKDH------EKL--  376 (516)
T ss_pred             CceEeeecccchhcccccceeccccCChhhcCchhhccccccceeehhhhhHHHHHHHhccCcccccch------hHH--
Confidence            9999999999964   34556788999999999999999999999999999999999999999975431      111  


Q ss_pred             HHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC----
Q 045353          208 LMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT----  283 (358)
Q Consensus       208 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----  283 (358)
                                                              +.-+..+...+|..++++++.|+..+|..||.+|..    
T Consensus       377 ----------------------------------------FeLIl~ed~kFPr~ls~eAktLLsGLL~kdP~kRLGgGpd  416 (516)
T KOG0690|consen  377 ----------------------------------------FELILMEDLKFPRTLSPEAKTLLSGLLKKDPKKRLGGGPD  416 (516)
T ss_pred             ----------------------------------------HHHHHhhhccCCccCCHHHHHHHHHHhhcChHhhcCCCch
Confidence                                                    112333456788888999999999999999999984    


Q ss_pred             -HHHHhcCcCcCCC
Q 045353          284 -AAQCLSHPWMSAG  296 (358)
Q Consensus       284 -a~elL~hpwf~~~  296 (358)
                       |.|+++|+||.+-
T Consensus       417 DakEi~~h~FF~~v  430 (516)
T KOG0690|consen  417 DAKEIMRHRFFASV  430 (516)
T ss_pred             hHHHHHhhhhhccC
Confidence             8999999999874

>cd05592 STKc_nPKC_theta_delta Catalytic domain of the Protein Serine/Threonine Kinases, Novel Protein Kinase C theta and delta

Probab=100.00  E-value=1.6e-34  Score=264.57  Aligned_cols=227  Identities=19%  Similarity=0.218  Sum_probs=173.4

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+|+|++......  .....+.++...... ...|++++....... .....|+||||++||+|.+++.....+++
T Consensus        18 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~hp~i~~~~~~~~-~~~~~~lv~e~~~gg~L~~~~~~~~~~~~   95 (316)
T cd05592          18 GTNEFFAIKALKKDVVLEDDDVECTMVERRVLAL-AWEHPFLTHLFCTFQ-TKEHLFFVMEYLNGGDLMFHIQSSGRFDE   95 (316)
T ss_pred             CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh-ccCCCCccceeeEEE-cCCEEEEEEcCCCCCcHHHHHHHcCCCCH
Confidence            45667999998765432  222333333333322 246777777665443 34578999999999999998887777889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||+|....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~al~~LH~~~ivH~dlkp~Nill~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (316)
T cd05592          96 ARARFYAAEIICGLQFLHKKGIIYRDLKLDNVLLDKDGHIKIADFGMCKENMNGEGKASTFCGTPDYIAPEILKGQKYNE  175 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHeEECCCCCEEEccCcCCeECCCCCCccccccCCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    89999999999999999997532   2234458999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      .......+.   ..                                   
T Consensus       176 ~~DvwslG~il~ell~G~~Pf~~~~------~~~~~~~i~---~~-----------------------------------  211 (316)
T cd05592         176 SVDWWSFGVLLYEMLIGQSPFHGED------EDELFDSIL---ND-----------------------------------  211 (316)
T ss_pred             cccchhHHHHHHHHHhCCCCCCCCC------HHHHHHHHH---cC-----------------------------------
Confidence            9999999999999999999997543      222222211   11                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH-HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA-AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta-~elL~hpwf~~~  296 (358)
                          ...++...+.++.+||.+||+.||++|+++ .++++||||...
T Consensus       212 ----~~~~~~~~~~~~~~ll~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05592         212 ----RPHFPRWISKEAKDCLSKLFERDPTKRLGVDGDIRQHPFFRGI  254 (316)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHccCCHHHcCCChHHHHcCcccCCC
Confidence                111233346788999999999999999986 588899999863

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta and delta-like isoforms, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an imp

>cd05631 STKc_GRK4 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 4

Probab=100.00  E-value=2.4e-34  Score=259.62  Aligned_cols=230  Identities=17%  Similarity=0.191  Sum_probs=172.3

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--cccc
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~   95 (358)
                      .+|..+|+|.+.......  ....+.++.+...+  ..+.+++....... ....+|+|||||.||+|.+++..  ...+
T Consensus        23 ~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~--l~~~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~~~~~~~~~~   99 (285)
T cd05631          23 ATGKMYACKKLEKKRIKKRKGEAMALNEKRILEK--VNSRFVVSLAYAYE-TKDALCLVLTIMNGGDLKFHIYNMGNPGF   99 (285)
T ss_pred             cCCceEEEEEeeHhhhhhhhhHHHHHHHHHHHHh--cCCCcEEEEEEEEc-cCCeEEEEEEecCCCcHHHHHHhhCCCCC
Confidence            467788999876543322  22344555555554  35566665544433 34578999999999999877643  2357


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++.++..++.+++.++.++|+.+++||    +|||+++++.+||+|||++.....  .....+||+.|+|||++.+..|+
T Consensus       100 ~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  179 (285)
T cd05631         100 DEQRAIFYAAELCCGLEDLQRERIVYRDLKPENILLDDRGHIRISDLGLAVQIPEGETVRGRVGTVGYMAPEVINNEKYT  179 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeCCCcEEcCCCCeecCCCCCCCccCHhhhcCCCCC
Confidence            788899999999999999999999999    999999999999999999976532  23456899999999999998999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|+.||.+.....      ....+...+..                                  
T Consensus       180 ~~~DvwslGvil~el~~g~~pf~~~~~~~------~~~~~~~~~~~----------------------------------  219 (285)
T cd05631         180 FSPDWWGLGCLIYEMIQGQSPFRKRKERV------KREEVDRRVKE----------------------------------  219 (285)
T ss_pred             cccCchhHHHHHHHHHhCCCCCCCCCcch------hHHHHHHHhhc----------------------------------
Confidence            99999999999999999999997544211      11111111000                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                          ....++...+..+.+||.+||+.||.+|||     ++++++||||...
T Consensus       220 ----~~~~~~~~~s~~~~~li~~~l~~~P~~R~~~~~~~~~~~~~h~~~~~~  267 (285)
T cd05631         220 ----DQEEYSEKFSEDAKSICRMLLTKNPKERLGCRGNGAAGVKQHPIFKNI  267 (285)
T ss_pred             ----ccccCCccCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHhcCHhhcCC
Confidence                011233445778999999999999999997     8999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK4 has a limited tissue distribution. It is mainly found i

>cd05588 STKc_aPKC Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C

Probab=100.00  E-value=2.3e-34  Score=264.96  Aligned_cols=233  Identities=18%  Similarity=0.176  Sum_probs=175.8

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++........  ...+.++.+..... ..|++++....... ....+|+|||||+||+|.+++.....+++
T Consensus        18 ~~~~~~aiK~i~~~~~~~~~~~~~~~~e~~il~~~-~~hp~Iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~~~~~~~l~~   95 (329)
T cd05588          18 KTRRIYAMKVIKKELVNDDEDIDWVQTEKHVFETA-SNHPFLVGLHSCFQ-TESRLFFVIEFVSGGDLMFHMQRQRKLPE   95 (329)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhc-cCCCCCCceEEEEE-cCCEEEEEEeCCCCCCHHHHHHHcCCCCH
Confidence            4567789999886544332  23444554444443 35677777665433 34578999999999999998877777899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+++..   .......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (329)
T cd05588          96 EHARFYSAEISLALNFLHERGIIYRDLKLDNVLLDAEGHIKLTDYGMCKEGIRPGDTTSTFCGTPNYIAPEILRGEDYGF  175 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEECcCccccccccCCCccccccCCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    8999999999999999998642   22234568999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCC--CCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDN--YDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~--~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ++||||+||++|+|++|+.||.......  .....+.+..                                        
T Consensus       176 ~~DiwslG~~l~el~~g~~Pf~~~~~~~~~~~~~~~~~~~----------------------------------------  215 (329)
T cd05588         176 SVDWWALGVLMFEMMAGRSPFDIVGMSDNPDQNTEDYLFQ----------------------------------------  215 (329)
T ss_pred             ccceechHHHHHHHHHCCCCcccccccccccccchHHHHH----------------------------------------
Confidence            9999999999999999999996432111  0001111110                                        


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC------HHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT------AAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t------a~elL~hpwf~~  295 (358)
                       .........+...+..+.+||.+||+.||.+|+|      +.++++||||..
T Consensus       216 -~~~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~hp~~~~  267 (329)
T cd05588         216 -VILEKQIRIPRSLSVKASSVLKGFLNKDPKERLGCHPQTGFRDIKSHPFFRN  267 (329)
T ss_pred             -HHHcCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHhcCCCCCC
Confidence             0111122334455778999999999999999987      789999999976

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. They contain a C2-like region, instead of a calcium-binding (C2) region found in classical PKCs, in their regulatory domain. There are two aPKC isoforms, zeta and iota. aPKCs are involved in many cellular functions incl

>PTZ00036 glycogen synthase kinase; Provisional

Probab=100.00  E-value=1e-33  Score=270.08  Aligned_cols=251  Identities=21%  Similarity=0.229  Sum_probs=177.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-------CCCCCCCcccccCCCCCcccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-------PSSPDNFSVDTIPNGVSVEERQN--   90 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~e~~~gg~L~~~~~--   90 (358)
                      .+|..+|+|.+....     ....++......  +.|++++.+.....       .....+++||||++++ |.+++.  
T Consensus        89 ~~~~~vAiK~i~~~~-----~~~~~Ei~il~~--l~h~niv~l~~~~~~~~~~~~~~~~~l~lvmE~~~~~-l~~~~~~~  160 (440)
T PTZ00036         89 DTSEKVAIKKVLQDP-----QYKNRELLIMKN--LNHINIIFLKDYYYTECFKKNEKNIFLNVVMEFIPQT-VHKYMKHY  160 (440)
T ss_pred             CCCCEEEEEEEecCc-----chHHHHHHHHHh--cCCCCCcceeeeEeecccccCCCceEEEEEEecCCcc-HHHHHHHH
Confidence            456788888764321     122344444444  45777776543321       1123467899999974 444332  


Q ss_pred             --cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecC--CCCCCCccCCCcchhH
Q 045353           91 --DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTH--KQFTNDIQTRQYRCPE  161 (358)
Q Consensus        91 --~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE  161 (358)
                        ....+.+..+..++.|++.|+.|+|+.+++||    +|||++.++ .+||+|||+|+...  ......+||+.|+|||
T Consensus       161 ~~~~~~l~~~~~~~~~~qi~~gL~yLH~~~IiHrDLKp~NILl~~~~~~vkL~DFGla~~~~~~~~~~~~~~t~~y~aPE  240 (440)
T PTZ00036        161 ARNNHALPLFLVKLYSYQLCRALAYIHSKFICHRDLKPQNLLIDPNTHTLKLCDFGSAKNLLAGQRSVSYICSRFYRAPE  240 (440)
T ss_pred             hhcCCCCCHHHHHHHHHHHHHHHHHHHHCCEecCCcCHHHEEEcCCCCceeeeccccchhccCCCCcccCCCCcCccCHH
Confidence              34567888899999999999999999999999    999999665 69999999997643  2334568899999999


Q ss_pred             HHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+. .|+.++|||||||++|+|++|.+||.+.+      ..+++..+.+.+|.++..........   +..       
T Consensus       241 ~~~~~~~~~~~~DiwSlGvil~elltG~~pf~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~---~~~-------  304 (440)
T PTZ00036        241 LMLGATNYTTHIDLWSLGCIIAEMILGYPIFSGQS------SVDQLVRIIQVLGTPTEDQLKEMNPN---YAD-------  304 (440)
T ss_pred             HhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhchh---hhc-------
Confidence            99875 58999999999999999999999998665      56788888888888766543221100   000       


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        ..+ +..........++...+.++.+||.+||++||.+|||+.|+|+||||....
T Consensus       305 --~~~-~~~~~~~l~~~~p~~~~~~~~~li~~~L~~dP~~R~ta~e~l~hp~f~~~~  358 (440)
T PTZ00036        305 --IKF-PDVKPKDLKKVFPKGTPDDAINFISQFLKYEPLKRLNPIEALADPFFDDLR  358 (440)
T ss_pred             --ccC-CccCchhHHHHhccCCCHHHHHHHHHHCCCChhHCcCHHHHhCChhHHhhh
Confidence              000 000000001123445578899999999999999999999999999998643

>PLN00034 mitogen-activated protein kinase kinase; Provisional

Probab=100.00  E-value=8.3e-34  Score=263.82  Aligned_cols=228  Identities=18%  Similarity=0.231  Sum_probs=172.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+........+..+.++.+....  +.|.+++...... .....+|+|||||+||+|.+..    ...+..
T Consensus        97 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~----~~~~~~  169 (353)
T PLN00034         97 PTGRLYALKVIYGNHEDTVRRQICREIEILRD--VNHPNVVKCHDMF-DHNGEIQVLLEFMDGGSLEGTH----IADEQF  169 (353)
T ss_pred             CCCCEEEEEEEecCCcHHHHHHHHHHHHHHHh--CCCCCcceeeeEe-ccCCeEEEEEecCCCCcccccc----cCCHHH
Confidence            35778999999777666667778888777766  3567777666544 3456789999999999987643    345667


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC-----CC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG-----SK  167 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~-----~~  167 (358)
                      +..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......   ....+||..|+|||++..     ..
T Consensus       170 ~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  249 (353)
T PLN00034        170 LADVARQILSGIAYLHRRHIVHRDIKPSNLLINSAKNVKIADFGVSRILAQTMDPCNSSVGTIAYMSPERINTDLNHGAY  249 (353)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEcccccceecccccccccccccCccccCccccccccccCcC
Confidence            78899999999999999999999    8999999999999999999765432   245589999999999853     22


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|+.||.....      .+....+..+....                               
T Consensus       250 ~~~~~DvwslGvil~el~~g~~pf~~~~~------~~~~~~~~~~~~~~-------------------------------  292 (353)
T PLN00034        250 DGYAGDIWSLGVSILEFYLGRFPFGVGRQ------GDWASLMCAICMSQ-------------------------------  292 (353)
T ss_pred             CCcchhHHHHHHHHHHHHhCCCCCCCCCC------ccHHHHHHHHhccC-------------------------------
Confidence            46789999999999999999999963221      11111111110000                               


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                             ....+...+..+.+||.+||..||++|||+.|+|+||||.....
T Consensus       293 -------~~~~~~~~~~~l~~li~~~l~~~P~~Rpt~~ell~hp~~~~~~~  336 (353)
T PLN00034        293 -------PPEAPATASREFRHFISCCLQREPAKRWSAMQLLQHPFILRAQP  336 (353)
T ss_pred             -------CCCCCCccCHHHHHHHHHHccCChhhCcCHHHHhcCcccccCCc
Confidence                   01122344678999999999999999999999999999998643

>KOG0665 consensus Jun-N-terminal kinase (JNK) [Signal transduction mechanisms]

Probab=100.00  E-value=4.4e-34  Score=245.57  Aligned_cols=264  Identities=21%  Similarity=0.282  Sum_probs=194.9

Q ss_pred             cccCcccccccccCccchhh-hHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQ-KKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      +-.+.+|++|-+...+.-.+ .+|-.|+.+-.  .+..+.+++.++...+..     -.+.|+|||||.+ +|...+.  
T Consensus        38 ~v~~~~v~ikk~~~pf~n~~~akra~rel~l~--~~v~~~nii~l~n~ftP~~~l~~~~e~y~v~e~m~~-nl~~vi~--  112 (369)
T KOG0665|consen   38 QVLGRPVAIKKLSRPFQNQTHAKRAYRELKLM--KCVNHKNIISLLNVFTPQKTLEEFQEVYLVMELMDA-NLCQVIL--  112 (369)
T ss_pred             hhccCceehhhhcCccccCccchhhhhhhhhh--hhhcccceeeeeeccCccccHHHHHhHHHHHHhhhh-HHHHHHH--
Confidence            45677888888887754432 24444444333  345677777777665543     3778999999986 4444443  


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .-++-..+..++.|++.|+.++|+.+|+||    +||++..++.+||+|||+|+.....  ++..+.|+.|+|||++.+.
T Consensus       113 ~elDH~tis~i~yq~~~~ik~lhs~~IihRdLkPsnivv~~~~~lKi~dfg~ar~e~~~~~mtpyVvtRyyrapevil~~  192 (369)
T KOG0665|consen  113 MELDHETISYILYQMLCGIKHLHSAGIIHRDLKPSNIVVNSDCTLKILDFGLARTEDTDFMMTPYVVTRYYRAPEVILGM  192 (369)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHhcceeecccCcccceecchhheeeccchhhcccCcccccCchhheeeccCchheecc
Confidence            335667889999999999999999999999    9999999999999999999776543  5677999999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc-CCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH-GDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  245 (358)
                      .|...+||||+||++.||++|...|.|..      ..++..++.+.+|++.+............|..+ ...........
T Consensus       193 ~~ke~vdiwSvGci~gEli~~~Vlf~g~d------~idQ~~ki~~~lgtpd~~F~~qL~~~~r~yv~~~~~y~~~~f~~~  266 (369)
T KOG0665|consen  193 GYKENVDIWSVGCIMGELILGTVLFPGKD------HIDQWNKIIEQLGTPDPSFMKQLQPTVRNYVENRPQYQAISFSEL  266 (369)
T ss_pred             CCcccchhhhhhhHHHHHhhceEEecCch------HHHHHHHHHHHhcCCCHHHHHHhhHHHHHHhhcChHhhccchhhh
Confidence            99999999999999999999999998665      788999999999998877655544444433331 11111111111


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                      .+. .........++..+..+++|+.+||..||++|++++++|+||||+
T Consensus       267 fpD-~~f~~~~e~~~~~~~~ardll~~MLvi~pe~Risv~daL~HPY~~  314 (369)
T KOG0665|consen  267 FPD-SLFPVVLEGSKLDCSLARDLLSKMLVIDPEKRISVDDALRHPYIK  314 (369)
T ss_pred             CCc-ccccccccCCccchHHHHHHHHHhhccChhhcccHHHHhcCCeee
Confidence            110 000111122234466789999999999999999999999999998

>cd05617 STKc_aPKC_zeta Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C zeta

Probab=100.00  E-value=2.8e-34  Score=264.15  Aligned_cols=234  Identities=18%  Similarity=0.168  Sum_probs=176.8

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+|+|++.......  ....++++.....+. ..+++++....... ....+|+||||++||+|..++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~l~~   95 (327)
T cd05617          18 KNDQIYAMKVVKKELVHDDEDIDWVQTEKHVFEQA-SSNPFLVGLHSCFQ-TTSRLFLVIEYVNGGDLMFHMQRQRKLPE   95 (327)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhh-cCCCCEeeEEEEEE-eCCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            456778999998765433  234455555444443 35566666654433 34568999999999999988877777899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (327)
T cd05617          96 EHARFYAAEICIALNFLHERGIIYRDLKLDNVLLDADGHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGF  175 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEeCCCCEEEeccccceeccCCCCceecccCCcccCCHHHHCCCCCCc
Confidence            9999999999999999999999999    99999999999999999997532   2234568999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||..............+....                                        
T Consensus       176 ~~DiwslGvil~ell~g~~pf~~~~~~~~~~~~~~~~~~~----------------------------------------  215 (327)
T cd05617         176 SVDWWALGVLMFEMMAGRSPFDIITDNPDMNTEDYLFQVI----------------------------------------  215 (327)
T ss_pred             hheeehhHHHHHHHHhCCCCCCccCCCcccccHHHHHHHH----------------------------------------
Confidence            9999999999999999999996543322111111111111                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCC------HHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPT------AAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t------a~elL~hpwf~~~  296 (358)
                       .......+...+..+.++|.+||..||.+|++      ++++++||||...
T Consensus       216 -~~~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~~i~~h~~f~~~  266 (327)
T cd05617         216 -LEKPIRIPRFLSVKASHVLKGFLNKDPKERLGCQPQTGFSDIKSHTFFRSI  266 (327)
T ss_pred             -HhCCCCCCCCCCHHHHHHHHHHhccCHHHcCCCCCCCCHHHHHcCCCCCCC
Confidence             01112234445678899999999999999998      5799999999864

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, zeta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-zeta plays a critical role in activating the glucose transport response. It is activated by glucose, insulin, and exercise through diverse pathways

>cd07872 STKc_PCTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-2 kinase

Probab=100.00  E-value=6.5e-34  Score=259.71  Aligned_cols=255  Identities=22%  Similarity=0.270  Sum_probs=187.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      ++..+|+|.+...........+.++......  ..+++++....... .+...|+||||+.+ +|.+++.. ...+...+
T Consensus        30 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~~  105 (309)
T cd07872          30 TENLVALKEIRLEHEEGAPCTAIREVSLLKD--LKHANIVTLHDIVH-TDKSLTLVFEYLDK-DLKQYMDDCGNIMSMHN  105 (309)
T ss_pred             CCCeEEEEEeeccccCCcchhHHHHHHHHHh--CCCCCcceEEEEEe-eCCeEEEEEeCCCC-CHHHHHHhcCCCCCHHH
Confidence            5667899988766555555566666666555  35666776665543 34578999999986 66665543 34567888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....+|+.|+|||++.+. .++.+
T Consensus       106 ~~~~~~qi~~aL~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  185 (309)
T cd07872         106 VKIFLYQILRGLAYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSVPTKTYSNEVVTLWYRPPDVLLGSSEYSTQ  185 (309)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECccccceecCCCccccccccccccccCCHHHhCCCCCCcH
Confidence            89999999999999999999999    9999999999999999999754322   2345789999999999874 48999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|++||.+.+      ..+.+..+.+.++.++...+........+.....       .... ... 
T Consensus       186 ~DiwslG~il~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~-  250 (309)
T cd07872         186 IDMWGVGCIFFEMASGRPLFPGST------VEDELHLIFRLLGTPTEETWPGISSNDEFKNYNF-------PKYK-PQP-  250 (309)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHhhhcchhhhhhhhc-------CccC-CCc-
Confidence            999999999999999999997654      5677888888888887766543322211111000       0000 000 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                         .......++.++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       251 ---~~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~~  293 (309)
T cd07872         251 ---LINHAPRLDTEGIELLTKFLQYESKKRISAEEAMKHAYFRSLG  293 (309)
T ss_pred             ---hhhhccCCCHHHHHHHHHhccCChhhCCCHHHHhcChhhhhcc
Confidence               0111233567889999999999999999999999999999743

Serine/Threonine Kinases (STKs), PCTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-2 is specifically expressed in neurons in the central nervous system, mainly in terminally differentiated neurons. It associates with Trap (Tudor repeat associator with PCTAIRE-2) and could play

>cd06649 PKc_MEK2 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 2

Probab=100.00  E-value=7.8e-34  Score=261.66  Aligned_cols=263  Identities=17%  Similarity=0.176  Sum_probs=181.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+........+.++.++.+...+.  .+++++....... .+...|+||||++||+|.+++.....+.+..
T Consensus        28 ~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  104 (331)
T cd06649          28 PSGLIMARKLIHLEIKPAIRNQIIRELQVLHEC--NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKEAKRIPEEI  104 (331)
T ss_pred             CCCcEEEEEEeecccCHHHHHHHHHHHHHHHHC--CCCCCCeEEEEEE-ECCEEEEEeecCCCCcHHHHHHHcCCCCHHH
Confidence            356778899988776666677788887777663  5677777665433 3457899999999999999998777788889


Q ss_pred             hhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.|+|+. +++|+    +|||++.++.+||+|||++..... ......||+.|+|||++.+..++.++|
T Consensus       105 ~~~~~~~i~~~l~~lH~~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~D  184 (331)
T cd06649         105 LGKVSIAVLRGLAYLREKHQIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSD  184 (331)
T ss_pred             HHHHHHHHHHHHHHHhhcCCEEcCCCChhhEEEcCCCcEEEccCcccccccccccccCCCCcCcCCHhHhcCCCCCchHh
Confidence            999999999999999985 58888    999999999999999999965433 234557999999999999988999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC--------CChhhhhccCCchhhhhccC
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR--------YSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ||||||++|+|++|+.||....       ...   +...++.+.........        .........+ .........
T Consensus       185 iwslG~il~el~tg~~p~~~~~-------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  253 (331)
T cd06649         185 IWSMGLSLVELAIGRYPIPPPD-------AKE---LEAIFGRPVVDGEEGEPHSISPRPRPPGRPVSGHG-MDSRPAMAI  253 (331)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC-------HHH---HHHHhcccccccccCCccccCcccccccccccccc-cccccchhH
Confidence            9999999999999999996443       111   22222221100000000        0000000000 000000000


Q ss_pred             CcchhhHHh-h-hc-CChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVE-K-YD-FNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~-~-~~-~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ......... . .. .....+.++.+||.+||++||++|||+.++|+||||+..
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~~P~~Rpt~~ell~h~~~~~~  307 (331)
T cd06649         254 FELLDYIVNEPPPKLPNGVFTPDFQEFVNKCLIKNPAERADLKMLMNHTFIKRS  307 (331)
T ss_pred             HHHHHHHHhCCCcCCCCccccHHHHHHHHHHccCCcccCCCHHHHhcChHHhhc
Confidence            000000000 0 00 112357789999999999999999999999999999863

Protein kinases (PKs), MAP/ERK Kinase (MEK) 2 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK2 is a dual-specificity PK that phosphorylates and activates the downst

>cd07878 STKc_p38beta_MAPK11 Catalytic domain of the Serine/Threonine Kinase, p38beta Mitogen-Activated Protein Kinase

Probab=100.00  E-value=3.6e-33  Score=258.51  Aligned_cols=256  Identities=20%  Similarity=0.281  Sum_probs=185.0

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .++..+|+|.+...... ...+++.++.+...+  +.|++++...+....     .....|++|+++ |++|.+++.. .
T Consensus        38 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~-~  113 (343)
T cd07878          38 RLRQKVAVKKLSRPFQSLIHARRTYRELRLLKH--MKHENVIGLLDVFTPATSIENFNEVYLVTNLM-GADLNNIVKC-Q  113 (343)
T ss_pred             CCCCEEEEEEeCchhhhhHHHHHHHHHHHHHHh--cCCCchhhhhhhhcccccccccCcEEEEeecC-CCCHHHHHhc-C
Confidence            46678899988765433 233455566655555  356666666544321     124578999988 7888877653 4


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKY  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~  168 (358)
                      .+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++..........+||+.|+|||++.+ ..+
T Consensus       114 ~l~~~~~~~i~~qi~~aL~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  193 (343)
T cd07878         114 KLSDEHVQFLIYQLLRGLKYIHSAGIIHRDLKPSNVAVNEDCELRILDFGLARQADDEMTGYVATRWYRAPEIMLNWMHY  193 (343)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeecccCChhhEEECCCCCEEEcCCccceecCCCcCCccccccccCchHhcCCccC
Confidence            57888999999999999999999999999    9999999999999999999887766677789999999999987 458


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+..      ..+.+..+....+.++.............       .........+.
T Consensus       194 ~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  260 (343)
T cd07878         194 NQTVDIWSVGCIMAELLKGKALFPGND------YIDQLKRIMEVVGTPSPEVLKKISSEHAR-------KYIQSLPHMPQ  260 (343)
T ss_pred             CchhhhHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhcchhhHH-------HHhhccccccc
Confidence            999999999999999999999997544      45667777777777665543221110000       00000000000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...    .......++.+.+||.+||++||.+|||+.|+|+||||...
T Consensus       261 ~~~----~~~~~~~~~~~~~li~~mL~~dp~~R~s~~ell~hp~~~~~  304 (343)
T cd07878         261 QDL----KKIFRGANPLAIDLLEKMLVLDSDKRISASEALAHPYFSQY  304 (343)
T ss_pred             hhH----HHhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhcc
Confidence            000    00111235678899999999999999999999999999864

Serine/Threonine Kinases (STKs), p38beta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38beta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38beta, also called MAPK11, is

>cd05618 STKc_aPKC_iota Catalytic domain of the Protein Serine/Threonine Kinase, Atypical Protein Kinase C iota

Probab=100.00  E-value=5.3e-34  Score=262.51  Aligned_cols=234  Identities=19%  Similarity=0.194  Sum_probs=175.7

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.......  ..+.+.++.....+. ..|++++....... .....|+||||++||+|..++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~-~~hp~iv~~~~~~~-~~~~~~lv~E~~~~~~L~~~~~~~~~l~~   95 (329)
T cd05618          18 KTERIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA-SNHPFLVGLHSCFQ-TESRLFFVIEYVNGGDLMFHMQRQRKLPE   95 (329)
T ss_pred             CCCCEEEEEEEEhhHhcchhHHHHHHHHHHHHHhc-CCCCcCCceeeEEE-eCCEEEEEEeCCCCCCHHHHHHHcCCCCH
Confidence            456678999887754333  223344444443333 36677777665443 34678999999999999988877777889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+++...   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~i~~qi~~~l~~lH~~~ivH~Dikp~Nili~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (329)
T cd05618          96 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGF  175 (329)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCCEEEeeCCccccccCCCCccccccCCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    99999999999999999986532   2234558999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCC--CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNY--DKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~--~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ++|||||||++|+|++|..||........  ......+...                                       
T Consensus       176 ~~DiwslG~il~el~~g~~Pf~~~~~~~~~~~~~~~~~~~~---------------------------------------  216 (329)
T cd05618         176 SVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQV---------------------------------------  216 (329)
T ss_pred             ccceecccHHHHHHhhCCCCCccCCCcCCcccccHHHHHHH---------------------------------------
Confidence            99999999999999999999963221110  0011111110                                       


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC------HHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT------AAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t------a~elL~hpwf~~~  296 (358)
                        .......++...+..+.+||.+||+.||++|+|      +.++++||||...
T Consensus       217 --i~~~~~~~p~~~~~~~~~ll~~~L~~dP~~R~~~~~~~~~~~i~~hp~f~~~  268 (329)
T cd05618         217 --ILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  268 (329)
T ss_pred             --HhcCCCCCCCCCCHHHHHHHHHHhcCCHHHcCCCCCCCCHHHHhcCCCCCCC
Confidence              111122344556788999999999999999998      5899999999863

Serine/Threonine Kinases (STKs), Atypical Protein Kinase C (aPKC) subfamily, iota isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The aPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. aPKCs only require phosphatidylserine (PS) for activation. There are two aPKC isoforms, zeta and iota. PKC-iota is directly implicated in carcinogenesis. It is critical to oncogenic signaling mediated by Ras and Bcr-Abl. The PKC-iota gene is the target o

>cd05573 STKc_ROCK_NDR_like Catalytic domain of ROCK- and NDR kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=4.2e-34  Score=265.42  Aligned_cols=228  Identities=19%  Similarity=0.214  Sum_probs=175.2

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|.+.....  ......++++.+....  ..+++++....... .....|+||||+.||+|.+++.....+.+.
T Consensus        25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~  101 (350)
T cd05573          25 TGQVYAMKVLRKSDMIKRNQIAHVRAERDILAD--ADSPWIVKLYYSFQ-DEEHLYLVMEYMPGGDLMNLLIRKDVFPEE  101 (350)
T ss_pred             CCCEEEEEEEEHHHHhhccHHHHHHHHHHHHHh--cCCCCccchhhhee-cCCeEEEEEcCCCCCCHHHHHHHcCCCCHH
Confidence            577899999876432  2344555566555555  34666776654433 345789999999999999999877788899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---------------------------
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---------------------------  147 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---------------------------  147 (358)
                      .+..++.+++.|+.++|+.+++|+    +|||++.++.+||+|||++......                           
T Consensus       102 ~~~~i~~qi~~aL~~LH~~giiH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (350)
T cd05573         102 TARFYIAELVLALDSVHKLGFIHRDIKPDNILIDADGHIKLADFGLCKKMNKAKDREYYLNDSHNLLFRDNVLVRRRDHK  181 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEeecCCCCccCcccCcccccccccccccccccccccccccc
Confidence            999999999999999999999999    9999999999999999999654322                           


Q ss_pred             -----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          148 -----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       148 -----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                           .....||+.|+|||++.+..++.++|||||||++|+|++|+.||...+      .......+.......      
T Consensus       182 ~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~------  249 (350)
T cd05573         182 QRRVRANSTVGTPDYIAPEVLRGTPYGLECDWWSLGVILYEMLYGFPPFYSDT------LQETYNKIINWKESL------  249 (350)
T ss_pred             cccccccccccCccccCHHHHcCCCCCCceeeEecchhhhhhccCCCCCCCCC------HHHHHHHHhccCCcc------
Confidence                 234579999999999999999999999999999999999999997543      222222222110000      


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-HHHHhcCcCcCCC
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-AAQCLSHPWMSAG  296 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-a~elL~hpwf~~~  296 (358)
                                                      ........++.+.+||.+||. ||.+|++ ++++++||||...
T Consensus       250 --------------------------------~~p~~~~~~~~~~~li~~ll~-dp~~R~~s~~~ll~hp~~~~~  291 (350)
T cd05573         250 --------------------------------RFPPDPPVSPEAIDLICRLLC-DPEDRLGSFEEIKSHPFFKGI  291 (350)
T ss_pred             --------------------------------cCCCCCCCCHHHHHHHHHHcc-ChhhcCCCHHHHhcCCCcCCC
Confidence                                            001111247789999999998 9999999 9999999999864

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) and Nuclear Dbf2-Related (NDR)-like kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK- and NDR-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include ROCK and ROCK-like proteins such as DMPK, MRCK, and CRIK, as well as NDR and NDR-like proteins such as LATS, CBK1 and Sid2p. ROCK and CRIK are effectors of the small GTPase Rho, while MRCK is an effector of the small GTPase Cdc42. NDR and NDR-like kinases contain an N-terminal regulatory (NTR) domain and an insert within the

>cd05615 STKc_cPKC_alpha Catalytic domain of the Protein Serine/Threonine Kinase, Classical Protein Kinase C alpha

Probab=100.00  E-value=6e-34  Score=261.55  Aligned_cols=227  Identities=16%  Similarity=0.168  Sum_probs=171.5

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.....  ....+.+.++....... .++..++..... ......+|+||||++||+|.+++.....+++
T Consensus        23 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~~-~~~~~i~~~~~~-~~~~~~~~lv~Ey~~~g~L~~~i~~~~~l~~  100 (323)
T cd05615          23 GTDELYAIKILKKDVVIQDDDVECTMVEKRVLALQ-DKPPFLTQLHSC-FQTVDRLYFVMEYVNGGDLMYHIQQVGKFKE  100 (323)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhc-cCCCchhheeeE-EecCCEEEEEEcCCCCCcHHHHHHHcCCCCH
Confidence            4677899999876532  22223344444443322 233344434332 2334578999999999999999887778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.+++.|+.++|+.+++||    +|||++.++.+||+|||++.....   .....+||+.|+|||++.+..++.
T Consensus       101 ~~~~~i~~qi~~al~~lH~~~ivHrDikp~Nill~~~~~ikL~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  180 (323)
T cd05615         101 PQAVFYAAEISVGLFFLHRRGIIYRDLKLDNVMLDSEGHIKIADFGMCKEHMVDGVTTRTFCGTPDYIAPEIIAYQPYGK  180 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEeccccccccCCCCccccCccCCccccCHHHHcCCCCCC
Confidence            9999999999999999999999999    999999999999999999865321   223457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|.+||.+..      .......+..                                       
T Consensus       181 ~~DiwslGvil~elltG~~pf~~~~------~~~~~~~i~~---------------------------------------  215 (323)
T cd05615         181 SVDWWAYGVLLYEMLAGQPPFDGED------EDELFQSIME---------------------------------------  215 (323)
T ss_pred             ccchhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHh---------------------------------------
Confidence            9999999999999999999997543      2222222211                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                         ....++...+..+.+|+.+||+.||.+|++     ..++++||||...
T Consensus       216 ---~~~~~p~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~i~~h~~f~~~  263 (323)
T cd05615         216 ---HNVSYPKSLSKEAVSICKGLMTKHPSKRLGCGPEGERDIREHAFFRRI  263 (323)
T ss_pred             ---CCCCCCccCCHHHHHHHHHHcccCHhhCCCCCCCCHHHHhcCcccCCC
Confidence               111233445678899999999999999997     5789999999864

Serine/Threonine Kinases (STKs), Classical Protein Kinase C (cPKC) subfamily, alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, cPKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. There are four cPKC isoforms, named alpha, betaI, betaII, a

>cd05584 STKc_p70S6K Catalytic domain of the Protein Serine/Threonine Kinase, 70 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.1e-34  Score=262.63  Aligned_cols=226  Identities=16%  Similarity=0.188  Sum_probs=175.7

Q ss_pred             ccCcccccccccCccc-h--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLT-K--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++..... .  .....++++.....+  +.|++++....... .++..|+||||+.||+|.+++.....+.
T Consensus        22 ~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~il~~--l~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~   98 (323)
T cd05584          22 DTGKIFAMKVLKKATIVRNQKDTAHTKAERNILEA--VKHPFIVDLIYAFQ-TGGKLYLILEYLSGGELFMHLEREGIFM   98 (323)
T ss_pred             CCCCEEEEEEEEHHHHHhhhhhHHHHHHHHHHHHh--CCCCchhceeeEEe-cCCeEEEEEeCCCCchHHHHHHHcCCCC
Confidence            4677889998875422 2  222344555554444  46777777665543 3467899999999999999998877788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||+++...   ......+||+.|+|||++.+..++
T Consensus        99 ~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  178 (323)
T cd05584          99 EDTACFYLSEISLALEHLHQQGIIYRDLKPENILLDAQGHVKLTDFGLCKESIHEGTVTHTFCGTIEYMAPEILMRSGHG  178 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEeeCcCCeecccCCCcccccCCCccccChhhccCCCCC
Confidence            88899999999999999999999999    99999999999999999986432   223345799999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||.+..      ....+..+..                                      
T Consensus       179 ~~~DiwslG~il~ell~G~~pf~~~~------~~~~~~~~~~--------------------------------------  214 (323)
T cd05584         179 KAVDWWSLGALMYDMLTGAPPFTAEN------RKKTIDKILK--------------------------------------  214 (323)
T ss_pred             CcceecccHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--------------------------------------
Confidence            99999999999999999999996543      1222222111                                      


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                          ....++...++.+.+||.+||+.||++||     ++.++++||||...
T Consensus       215 ----~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~l~~h~~~~~~  262 (323)
T cd05584         215 ----GKLNLPPYLTPEARDLLKKLLKRNPSSRLGAGPGDAAEVQSHPFFRHV  262 (323)
T ss_pred             ----CCCCCCCCCCHHHHHHHHHHcccCHhHcCCCCCCCHHHHhcCCCcCCC
Confidence                11223444577899999999999999999     89999999999863

Serine/Threonine Kinases (STKs), 70 kDa ribosomal protein S6 kinase (p70S6K) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p70S6K subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p70S6K (or S6K) contains only one catalytic kinase domain, unlike p90 ribosomal S6 kinases (RSKs). It acts as a downstream effector of the STK mTOR (mammalian Target of Rapamycin) and plays a role in the regulation of the translation machinery during protein synthesis. p70S6K also plays a pivotal role in regulating cell size and glucose homeostasis. Its targets include S6, the translation initiation factor eIF3, and the in

>cd05614 STKc_MSK2_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 2

Probab=100.00  E-value=4.6e-34  Score=263.32  Aligned_cols=231  Identities=16%  Similarity=0.142  Sum_probs=171.5

Q ss_pred             ccCcccccccccCccchh---hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKN---QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++.......   ...++.++.+..... ..+++++...... .....+|+||||++||+|.+++.....+.
T Consensus        26 ~~~~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~-~~~~~~~lv~e~~~~g~L~~~l~~~~~~~  103 (332)
T cd05614          26 DTGKLYAMKVLQKAALVQKAKTVEHTRTERNVLEHV-RQSPFLVTLHYAF-QTEAKLHLILDYVSGGEMFTHLYQRDNFS  103 (332)
T ss_pred             CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHHhc-cCCCCcccEEEEE-ecCCEEEEEEeCCCCCcHHHHHHHcCCCC
Confidence            456778999886533221   223344444444332 2455666655433 33467899999999999999988777788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHhCCC-
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +.++..++.+++.++.|+|+.+++||    +|||++.++.+||+|||++.....    .....+||+.|+|||++.+.. 
T Consensus       104 ~~~~~~~~~qi~~~l~~lH~~~ivHrDlkp~Nili~~~~~~kl~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  183 (332)
T cd05614         104 EDEVRFYSGEIILALEHLHKLGIVYRDIKLENILLDSEGHVVLTDFGLSKEFLSEEKERTYSFCGTIEYMAPEIIRGKGG  183 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHeEECCCCCEEEeeCcCCccccccCCCccccccCCccccCHHHhcCCCC
Confidence            99999999999999999999999999    999999999999999999975422    223457999999999998764 


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||.......   ....+..  .+..                                 
T Consensus       184 ~~~~~DiwslG~il~elltg~~pf~~~~~~~---~~~~~~~--~~~~---------------------------------  225 (332)
T cd05614         184 HGKAVDWWSLGILIFELLTGASPFTLEGERN---TQSEVSR--RILK---------------------------------  225 (332)
T ss_pred             CCCccccccchhhhhhhhcCCCCCCCCCCCC---CHHHHHH--HHhc---------------------------------
Confidence            7899999999999999999999996443211   1111110  0000                                 


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                            ....++...+..+.+||.+||+.||++||     +++++++||||+..
T Consensus       226 ------~~~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~l~h~~~~~~  273 (332)
T cd05614         226 ------CDPPFPSFIGPEAQDLLHKLLRKDPKKRLGAGPQGASEIKEHPFFKGL  273 (332)
T ss_pred             ------CCCCCCCCCCHHHHHHHHHHcCCCHHHcCCCCCCCHHHHHcCCCcCCC
Confidence                  01123344577889999999999999999     88999999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK2, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd07868 STKc_CDK8 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 8

Probab=100.00  E-value=1.8e-33  Score=257.68  Aligned_cols=264  Identities=16%  Similarity=0.174  Sum_probs=177.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND-------   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~-------   91 (358)
                      .++..+|+|.+...-.   ...+.++.+....  +.|++++....... ..+...|+||||+.+ +|.+++..       
T Consensus        26 ~~~~~~aiK~~~~~~~---~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~   99 (317)
T cd07868          26 KDDRDYALKQIEGTGI---SMSACREIALLRE--LKHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKAN   99 (317)
T ss_pred             CCCceEEEEEECCCCC---cHHHHHHHHHHHh--cCCCCCcceeeeEecCCCcEEEEEEeccCC-CHHHHHHhccccccc
Confidence            3456788888765322   2334555555554  46777777665432 234568999999876 66665431       


Q ss_pred             --ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccc----cCCCcEEEEecCCceecCCC------CCCCccCC
Q 045353           92 --SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA----AVDVQCKLVDFGNACWTHKQ------FTNDIQTR  155 (358)
Q Consensus        92 --~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl----~~~~~vkL~DFG~a~~~~~~------~~~~~gt~  155 (358)
                        ...+++..+..++.|++.|+.|+|+.+++||    +|||+    +.++.+||+|||+|......      ....+||+
T Consensus       100 ~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivHrDlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~  179 (317)
T cd07868         100 KKPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTF  179 (317)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEecCCCCcCcEEEeecCceeccCCCCccccccCCccccc
Confidence              2246778899999999999999999999999    99999    45678999999999765432      23457899


Q ss_pred             CcchhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC---CCcHHHHHHHHHHhCCCchhhhcCCCCChhhh
Q 045353          156 QYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNY---DKDEDHLALMMELLGMMPRKIALGGRYSRDFF  231 (358)
Q Consensus       156 ~Y~aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  231 (358)
                      .|+|||++.+. .|+.++||||+||++|+|++|++||.+......   .....++..+...+|.++...+..........
T Consensus       180 ~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (317)
T cd07868         180 WYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHS  259 (317)
T ss_pred             cccCCHHHcCCCCcCchhhHHHHHHHHHHHHhCCCCccCCcccccccccccHHHHHHHHHhcCCCChHHhHHHhhccchh
Confidence            99999999885 489999999999999999999999976543221   12356777888888877765543321111000


Q ss_pred             hccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ....   ...... .................+..+.+||.+||++||.+|||++|+|+||||
T Consensus       260 ~~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07868         260 TLMK---DFRRNT-YTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYF  317 (317)
T ss_pred             hhhh---hhhccc-cCcccccchHHhcCCCCChHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence            0000   000000 000000000000011224568899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK8 can act as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the multi-subunit core Mediator complex, a cofactor that is involved in regulating RNA p

>cd05625 STKc_LATS1 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 1

Probab=100.00  E-value=5.4e-34  Score=267.85  Aligned_cols=229  Identities=20%  Similarity=0.192  Sum_probs=172.9

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+|+|.+....  ...+...++++.+...+  ..+++++........ ...+|+|||||+||+|.+++.....+.+
T Consensus        24 ~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~--~~h~~iv~~~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~e  100 (382)
T cd05625          24 DTKALYAMKTLRKKDVLLRNQVAHVKAERDILAE--ADNEWVVRLYYSFQD-KDNLYFVMDYIPGGDMMSLLIRMGIFPE  100 (382)
T ss_pred             CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh--CCCCcCCeEEEEEEe-CCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            356678999887532  23444566666666655  466777777665543 4578999999999999999887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---------------------------  146 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---------------------------  146 (358)
                      ..+..++.|++.++.++|+.+++||    +|||++.++.+||+|||+|.....                           
T Consensus       101 ~~~~~~~~qi~~al~~lH~~~ivHrDlKp~NILl~~~g~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (382)
T cd05625         101 DLARFYIAELTCAVESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQSGDHVRQDSMDFSNEWGDP  180 (382)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEeECCCCcccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999    999999999999999999742110                           


Q ss_pred             -----------------------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcH
Q 045353          147 -----------------------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDE  203 (358)
Q Consensus       147 -----------------------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~  203 (358)
                                             .....+||+.|+|||++.+..|+.++||||+||++|+|++|++||.+.+      ..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~------~~  254 (382)
T cd05625         181 ANCRCGDRLKPLERRAARQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLAQT------PL  254 (382)
T ss_pred             ccccccccccchhhhhccccccccccccccCcccCCHHHhcCCCCCCeeeEEechHHHHHHHhCCCCCCCCC------HH
Confidence                                   0123479999999999999999999999999999999999999997543      12


Q ss_pred             HHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC
Q 045353          204 DHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT  283 (358)
Q Consensus       204 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t  283 (358)
                      .....+.......                                      ........++++.+||.+|+ .||.+|++
T Consensus       255 ~~~~~i~~~~~~~--------------------------------------~~p~~~~~s~~~~~li~~l~-~~p~~R~~  295 (382)
T cd05625         255 ETQMKVINWQTSL--------------------------------------HIPPQAKLSPEASDLIIKLC-RGPEDRLG  295 (382)
T ss_pred             HHHHHHHccCCCc--------------------------------------CCCCcccCCHHHHHHHHHHc-cCHhHcCC
Confidence            2221111100000                                      00111234678899999976 59999997


Q ss_pred             ---HHHHhcCcCcCCC
Q 045353          284 ---AAQCLSHPWMSAG  296 (358)
Q Consensus       284 ---a~elL~hpwf~~~  296 (358)
                         ++++++||||...
T Consensus       296 ~~~~~ei~~hp~f~~~  311 (382)
T cd05625         296 KNGADEIKAHPFFKTI  311 (382)
T ss_pred             CCCHHHHhcCCCcCCc
Confidence               9999999999864

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. Promoter methylation, loss of heterozygosity, and missense mutations targeting the LATS1 gene have also been found in human sarcomas and ovarian cancers. In addition, decreased expression of LATS1 is associated with an aggressive phenotype an

>cd05570 STKc_PKC Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase C

Probab=100.00  E-value=4.9e-34  Score=261.55  Aligned_cols=226  Identities=17%  Similarity=0.203  Sum_probs=174.6

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+|+|.+.....  ......+.++.+..... ..|++++.+...... ...+|+||||++||+|.+++.....+.+.
T Consensus        19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~~-~~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~l~~~   96 (318)
T cd05570          19 TDELYAVKVLKKDVILQDDDVECTMTEKRVLALA-GKHPFLTQLHSCFQT-KDRLFFVMEYVNGGDLMFHIQRSGRFDEP   96 (318)
T ss_pred             CCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhc-cCCCCccceeeEEEc-CCEEEEEEcCCCCCCHHHHHHHcCCCCHH
Confidence            456789998876532  22334444454444333 256777777664433 45789999999999999988877788999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.+
T Consensus        97 ~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~  176 (318)
T cd05570          97 RARFYAAEIVLGLQFLHERGIIYRDLKLDNVLLDSEGHIKIADFGMCKEGILGGVTTSTFCGTPDYIAPEILSYQPYGPA  176 (318)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEccCCCHHHeEECCCCcEEecccCCCeecCcCCCcccceecCccccCHHHhcCCCCCcc
Confidence            999999999999999999999999    99999999999999999986532   22334579999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|+.||.+.+      .......+..                                        
T Consensus       177 ~DiwslGvil~~l~~G~~pf~~~~------~~~~~~~i~~----------------------------------------  210 (318)
T cd05570         177 VDWWALGVLLYEMLAGQSPFEGDD------EDELFQSILE----------------------------------------  210 (318)
T ss_pred             hhhhhHHHHHHHHhhCCCCCCCCC------HHHHHHHHHc----------------------------------------
Confidence            999999999999999999996543      2222211110                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCH-----HHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTA-----AQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta-----~elL~hpwf~~~  296 (358)
                        ....++...+..+.+||.+||+.||.+|||+     .++++||||...
T Consensus       211 --~~~~~~~~~~~~~~~li~~~l~~dP~~R~s~~~~~~~~ll~~~~~~~~  258 (318)
T cd05570         211 --DEVRYPRWLSKEAKSILKSFLTKNPEKRLGCLPTGEQDIKGHPFFREI  258 (318)
T ss_pred             --CCCCCCCcCCHHHHHHHHHHccCCHHHcCCCCCCCHHHHhcCCCcCCC
Confidence              0112233446788999999999999999999     999999999863

Serine/Threonine Kinases (STKs), Protein Kinase C (PKC) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. PKCs undergo three phosphorylations in order to take mature forms. In addition, classical PKCs depend on calcium, DAG (1,2-diacylglycerol), and in most cases, phosphatidylserine (PS) for activation. Novel PKCs are calcium-independent, but require DAG and PS for activity, while atypical PKCs only re

>cd05599 STKc_NDR_like Catalytic domain of Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=5.3e-34  Score=266.22  Aligned_cols=229  Identities=17%  Similarity=0.192  Sum_probs=173.5

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++...-  ...+...++++......  ..+++++....... .....|+|||||.||+|.+++.....+++
T Consensus        24 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~--l~h~~iv~~~~~~~-~~~~~~lv~E~~~~g~L~~~l~~~~~l~~  100 (364)
T cd05599          24 DTGHIYAMKKLRKSEMLEKEQVAHVRAERDILAE--ADNPWVVKLYYSFQ-DENYLYLIMEYLPGGDMMTLLMKKDTFTE  100 (364)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh--CCCCCCcceEEEEE-cCCeEEEEECCCCCcHHHHHHHHcCCCCH
Confidence            357789999987532  22334455566655555  35677777665444 34578999999999999999987778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------------------  147 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------------------  147 (358)
                      ..+..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||++......                          
T Consensus       101 ~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (364)
T cd05599         101 EETRFYIAETILAIDSIHKLGYIHRDIKPDNLLLDAKGHIKLSDFGLCTGLKKSHRTEFYRILSHALPSNFLDFISKPMS  180 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEeecccceecccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999    9999999999999999998643211                          


Q ss_pred             ---------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHH
Q 045353          148 ---------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMEL  212 (358)
Q Consensus       148 ---------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~  212 (358)
                                     ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+      .......+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~el~~G~~Pf~~~~------~~~~~~~i~~~  254 (364)
T cd05599         181 SKRKAETWKRNRRALAYSTVGTPDYIAPEVFLQTGYNKECDWWSLGVIMYEMLVGYPPFCSDN------PQETYRKIINW  254 (364)
T ss_pred             ccccccchhhcccccccccccCccccCHHHHcCCCCCCeeeeecchhHHHHhhcCCCCCCCCC------HHHHHHHHHcC
Confidence                           112469999999999999889999999999999999999999997543      22222221110


Q ss_pred             hCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC---HHHHhc
Q 045353          213 LGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT---AAQCLS  289 (358)
Q Consensus       213 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t---a~elL~  289 (358)
                      -...                                      ........++.+.+||.+||. +|.+|++   +.|+++
T Consensus       255 ~~~~--------------------------------------~~~~~~~~s~~~~~li~~ll~-~p~~R~~~~~~~~ll~  295 (364)
T cd05599         255 KETL--------------------------------------QFPDEVPLSPEAKDLIKRLCC-EAERRLGNNGVNEIKS  295 (364)
T ss_pred             CCcc--------------------------------------CCCCCCCCCHHHHHHHHHHcc-CHhhcCCCCCHHHHhc
Confidence            0000                                      000111246788999999997 9999998   999999


Q ss_pred             CcCcCCC
Q 045353          290 HPWMSAG  296 (358)
Q Consensus       290 hpwf~~~  296 (358)
                      ||||...
T Consensus       296 h~~~~~~  302 (364)
T cd05599         296 HPFFKGV  302 (364)
T ss_pred             CCCcCCC
Confidence            9999864

Serine/Threonine Kinases (STKs), Nuclear Dbf2-Related (NDR) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. NDR kinases regulate mitosis, cell growth, embryonic development, and neurological processes. They are also required for proper centrosome duplica

>cd05629 STKc_NDR_like_fungal Catalytic domain of Fungal Nuclear Dbf2-Related kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=6.5e-34  Score=266.83  Aligned_cols=229  Identities=18%  Similarity=0.196  Sum_probs=170.9

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++...-  .......++++.+...+  ..+++++....... .....|+|||||+||+|.+++.....+.+
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~--l~hp~iv~~~~~~~-~~~~~~lv~E~~~gg~L~~~l~~~~~~~~  100 (377)
T cd05629          24 DTGKIYAMKTLLKSEMFKKDQLAHVKAERDVLAE--SDSPWVVSLYYSFQ-DAQYLYLIMEFLPGGDLMTMLIKYDTFSE  100 (377)
T ss_pred             CCCCEEEEEEEEHHHHHHhHHHHHHHHHHHHHHh--CCCCCcceEEEEEE-cCCeeEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            466788999876432  22333455556555544  46777777765444 34578999999999999999887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------------------  147 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------------------  147 (358)
                      ..+..++.|++.++.|+|+.+++||    +|||++.++.+||+|||+|+.....                          
T Consensus       101 ~~~~~~~~ql~~aL~~LH~~givHrDlkp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (377)
T cd05629         101 DVTRFYMAECVLAIEAVHKLGFIHRDIKPDNILIDRGGHIKLSDFGLSTGFHKQHDSAYYQKLLQGKSNKNRIDNRNSVA  180 (377)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEEeecccccccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999    9999999999999999998532100                          


Q ss_pred             ------------------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcH
Q 045353          148 ------------------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDE  203 (358)
Q Consensus       148 ------------------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~  203 (358)
                                              ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+      ..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~------~~  254 (377)
T cd05629         181 VDSINLTMSSKDQIATWKKNRRLMAYSTVGTPDYIAPEIFLQQGYGQECDWWSLGAIMFECLIGWPPFCSEN------SH  254 (377)
T ss_pred             cccccccccchhhhhhhhhcccccccccCCCccccCHHHHccCCCCCceeeEecchhhhhhhcCCCCCCCCC------HH
Confidence                                    012479999999999999889999999999999999999999996543      22


Q ss_pred             HHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCC--
Q 045353          204 DHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR--  281 (358)
Q Consensus       204 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R--  281 (358)
                      +....+.......                                      .+......+.++.+||.+||. +|.+|  
T Consensus       255 ~~~~~i~~~~~~~--------------------------------------~~p~~~~~s~~~~dli~~lL~-~~~~r~~  295 (377)
T cd05629         255 ETYRKIINWRETL--------------------------------------YFPDDIHLSVEAEDLIRRLIT-NAENRLG  295 (377)
T ss_pred             HHHHHHHccCCcc--------------------------------------CCCCCCCCCHHHHHHHHHHhc-CHhhcCC
Confidence            2222222110000                                      000011246788999999998 77765  


Q ss_pred             -CCHHHHhcCcCcCCC
Q 045353          282 -PTAAQCLSHPWMSAG  296 (358)
Q Consensus       282 -~ta~elL~hpwf~~~  296 (358)
                       +|+.|+++||||++.
T Consensus       296 r~~~~~~l~hp~~~~~  311 (377)
T cd05629         296 RGGAHEIKSHPFFRGV  311 (377)
T ss_pred             CCCHHHHhcCCCcCCC
Confidence             599999999999863

Serine/Threonine Kinases (STKs), NDR kinase subfamily, fungal NDR-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This group is composed of fungal NDR-like proteins including Saccharomyces cerevisiae CBK1 (or CBK1p), Schizosaccharomyces pombe Orb6 (or Orb6p), Ustilago maydis Ukc1 (or Ukc1p), and Neurospora crassa Cot1. Like NDR kinase, group members contain an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. CBK1 is an essential component in the RAM (regulation of

>cd05589 STKc_PKN Catalytic domain of the Protein Serine/Threonine Kinase, Protein Kinase N

Probab=100.00  E-value=8.1e-34  Score=260.81  Aligned_cols=227  Identities=15%  Similarity=0.177  Sum_probs=173.9

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhh-ccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQG-CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++....  ......+++++.+..... ...|++++....... .....|+||||++||+|..++.. ..++
T Consensus        22 ~~~~~~aiK~~~~~~~~~~~~~~~l~~e~~~~~~~~~l~hp~i~~~~~~~~-~~~~~~lv~E~~~~~~L~~~~~~-~~l~   99 (324)
T cd05589          22 KTGELYAIKALKKGDIIARDEVESLMCEKRIFETANSERHPFLVNLFACFQ-TEDHVCFVMEYAAGGDLMMHIHT-DVFS   99 (324)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhccccCCCChhceeeEEE-cCCEEEEEEcCCCCCcHHHHhhc-CCCC
Confidence            456788999987643  223344555555444322 245677777665443 34578999999999999987754 4578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.++.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++
T Consensus       100 ~~~~~~~~~qi~~al~~lH~~~ivHrdlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  179 (324)
T cd05589         100 EPRAVFYAACVVLGLQYLHENKIVYRDLKLDNLLLDTEGFVKIADFGLCKEGMGFGDRTSTFCGTPEFLAPEVLTETSYT  179 (324)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEecCCCHHHeEECCCCcEEeCcccCCccCCCCCCcccccccCccccCHhHhcCCCCC
Confidence            88999999999999999999999999    99999999999999999986432   223456799999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+.+      .......+..                                      
T Consensus       180 ~~~DiwslG~il~el~~G~~pf~~~~------~~~~~~~i~~--------------------------------------  215 (324)
T cd05589         180 RAVDWWGLGVLIYEMLVGESPFPGDD------EEEVFDSIVN--------------------------------------  215 (324)
T ss_pred             cccchhhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--------------------------------------
Confidence            99999999999999999999997543      2222222111                                      


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                          ....++...+..+.+||.+||+.||.+||     ++.++++||||...
T Consensus       216 ----~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~~~~~l~~~~~f~~~  263 (324)
T cd05589         216 ----DEVRYPRFLSREAISIMRRLLRRNPERRLGSGEKDAEDVKKQPFFRDI  263 (324)
T ss_pred             ----CCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhhCCCcCCC
Confidence                11123344577889999999999999999     79999999999863

Serine/Threonine Kinases (STKs), Protein Kinase N (PKN) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKN subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKN has a C-terminal catalytic domain that is highly homologous to PKCs. Its unique N-terminal regulatory region contains antiparallel coiled-coil (ACC) domains. In mammals, there are three PKN isoforms from different genes (designated PKN-alpha, beta, and gamma), which show different enzymatic properties, tissue distribution, and varied functions. PKN can be activated by the small GTPase Rho, and by fatty acids such as arachidonic and linoleic acids. It is involved

>cd05619 STKc_nPKC_theta Catalytic domain of the Protein Serine/Threonine Kinase, Novel Protein Kinase C theta

Probab=100.00  E-value=5.8e-34  Score=260.80  Aligned_cols=227  Identities=19%  Similarity=0.214  Sum_probs=172.3

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+|+|.+.....  ........++...... ...|++++........ ...+|+||||++||+|.+++.....+.+
T Consensus        18 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~-~~~hp~iv~~~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~~~   95 (316)
T cd05619          18 GTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSL-AWEHPFLTHLYCTFQT-KENLFFVMEYLNGGDLMFHIQSCHKFDL   95 (316)
T ss_pred             CCCCEEEEEEEEHHHhhhcchHHHHHHHHHHHHh-ccCCCcCcceEEEEEe-CCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            3466789998876543  2222333333333222 2467777766655433 4578999999999999999887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.++.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~al~~LH~~~ivHrdikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (316)
T cd05619          96 PRATFYAAEIICGLQFLHSKGIVYRDLKLDNILLDTDGHIKIADFGMCKENMLGDAKTCTFCGTPDYIAPEILLGQKYNT  175 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeCCCCHHHEEECCCCCEEEccCCcceECCCCCCceeeecCCccccCHHHHcCCCCCc
Confidence            8999999999999999999999999    99999999999999999986532   2234557999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||.+.+      .......+.. .                                     
T Consensus       176 ~~DvwslG~il~el~~G~~pf~~~~------~~~~~~~i~~-~-------------------------------------  211 (316)
T cd05619         176 SVDWWSFGVLLYEMLIGQSPFHGHD------EEELFQSIRM-D-------------------------------------  211 (316)
T ss_pred             hhhhhhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh-C-------------------------------------
Confidence            9999999999999999999997543      1222211110 0                                     


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH-HHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA-QCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~-elL~hpwf~~~  296 (358)
                          ...++...+.++.+||.+||+.||++|+++. ++++||||...
T Consensus       212 ----~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~h~~~~~~  254 (316)
T cd05619         212 ----NPCYPRWLTREAKDILVKLFVREPERRLGVKGDIRQHPFFREI  254 (316)
T ss_pred             ----CCCCCccCCHHHHHHHHHHhccCHhhcCCChHHHHcCcccCCC
Confidence                0112233467889999999999999999996 89999999874

Serine/Threonine Kinases (STKs), Novel Protein Kinase C (nPKC), theta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The nPKC subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PKCs are classified into three groups (classical, atypical, and novel) depending on their mode of activation and the structural characteristics of their regulatory domain. nPKCs are calcium-independent, but require DAG (1,2-diacylglycerol) and phosphatidylserine (PS) for activity. There are four nPKC isoforms, delta, epsilon, eta, and theta. PKC-theta is selectively expressed in T-cells and plays an important and non-redundant role in

>cd05575 STKc_SGK Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase

Probab=100.00  E-value=1.7e-34  Score=265.16  Aligned_cols=227  Identities=15%  Similarity=0.114  Sum_probs=172.3

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.......  ..+++.++.....+. ..|++++....... .....|+||||++||+|..++.....+.+
T Consensus        18 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~~~~~-l~hp~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~   95 (323)
T cd05575          18 ADGKFYAVKVLQKKAILKKKEQKHIMAERNVLLKN-VKHPFLVGLHYSFQ-TADKLYFVLDYVNGGELFFHLQRERSFPE   95 (323)
T ss_pred             CCCCEEEEEEEEHHHHhhhhHHHHHHHHHHHHHhh-CCCCCCCCeeEEEE-eCCEEEEEEcCCCCCCHHHHHHhcCCCCH
Confidence            467789999886543222  222333332222222 46677777654433 34578999999999999998887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~~l~~lH~~givH~dikp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (323)
T cd05575          96 PRARFYAAEIASALGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGIEHSKTTSTFCGTPEYLAPEVLRKQPYDR  175 (323)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHeEECCCCcEEEeccCCCcccccCCCccccccCChhhcChhhhcCCCCCc
Confidence            9999999999999999999999999    99999999999999999986532   2234457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      .......+.   .                                    
T Consensus       176 ~~DvwslG~il~ell~g~~pf~~~~------~~~~~~~i~---~------------------------------------  210 (323)
T cd05575         176 TVDWWCLGAVLYEMLYGLPPFYSRD------TAEMYDNIL---N------------------------------------  210 (323)
T ss_pred             cccccccchhhhhhhcCCCCCCCCC------HHHHHHHHH---c------------------------------------
Confidence            9999999999999999999997543      111111111   1                                    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf~~~  296 (358)
                         .....+...+..+.+||.+||+.||.+||++    .++++||||...
T Consensus       211 ---~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~il~~~~~~~~  257 (323)
T cd05575         211 ---KPLRLKPNISVSARHLLEGLLQKDRTKRLGAKDDFLEIKNHVFFSSI  257 (323)
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHhhcCHHhCCCCCCCHHHHHcCCCcCCC
Confidence               0112233447789999999999999999997    699999999763

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGKs are activated by insulin and growth factors via phosphoinositide 3-kinase and PDK1. They activate ion channels, ion carriers, and the Na-K-ATPase, as well as regulate the activity of enzymes and transcription factors. SGKs play important roles in transport, hormone release, neuroexcitability, cell pr

>cd05608 STKc_GRK1 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 1

Probab=100.00  E-value=1.8e-33  Score=253.28  Aligned_cols=230  Identities=17%  Similarity=0.167  Sum_probs=171.0

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc----ccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN----DSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~----~~~   93 (358)
                      .+|..+|+|.+........  ...+..+.+....  ..+++++....... .....|+||||++||+|.+++.    ...
T Consensus        16 ~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~g~L~~~~~~~~~~~~   92 (280)
T cd05608          16 ATGKLYACKKLNKKRLKKRKGYEGAMVEKRILAK--VHSRFIVSLAYAFQ-TKTDLCLVMTIMNGGDLRYHIYNVDEENP   92 (280)
T ss_pred             cCCcEEEEEeeeHHHHhhhHHHHHHHHHHHHHHh--CCCCcEeeeeEEEc-CCCeEEEEEeCCCCCCHHHHHHhccccCC
Confidence            3567888898875433322  2344445444444  35666666654433 3456899999999999987663    334


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+++..+..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++......   .....||+.|+|||++.+.
T Consensus        93 ~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  172 (280)
T cd05608          93 GFPEPRACFYTAQIISGLEHLHQRRIIYRDLKPENVLLDNDGNVRISDLGLAVELKDGQSKTKGYAGTPGFMAPELLQGE  172 (280)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCccceecCCCCccccccCCCcCccCHHHhcCC
Confidence            57888999999999999999999999999    8999999999999999999764322   2345789999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++||||+||++|+|++|+.||........  ...   ....++.                                
T Consensus       173 ~~~~~~DvwslG~il~el~~g~~pf~~~~~~~~--~~~---~~~~~~~--------------------------------  215 (280)
T cd05608         173 EYDFSVDYFALGVTLYEMIAARGPFRARGEKVE--NKE---LKQRILN--------------------------------  215 (280)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCCCCCCcchh--HHH---HHHhhcc--------------------------------
Confidence            999999999999999999999999975432110  000   0000000                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                             ....++...+..+.+|+.+||+.||++||     |++++++||||+..
T Consensus       216 -------~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~~l~h~~~~~~  263 (280)
T cd05608         216 -------DSVTYPDKFSPASKSFCEALLAKDPEKRLGFRDGNCDGLRTHPLFRDL  263 (280)
T ss_pred             -------cCCCCcccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHhcChhhhcC
Confidence                   01122344577899999999999999999     89999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK1, also called rhodopsin kinase, belongs to the visual g

>cd05626 STKc_LATS2 Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor 2

Probab=100.00  E-value=9.8e-34  Score=265.94  Aligned_cols=230  Identities=20%  Similarity=0.173  Sum_probs=172.7

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++...-  .......++++.+....  ..+++++........ ...+|+|||||+||+|.+++.....+.+
T Consensus        24 ~~~~~~aiK~i~~~~~~~~~~~~~~~~E~~il~~--l~h~~iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~e  100 (381)
T cd05626          24 DTHALYAMKTLRKKDVLNRNQVAHVKAERDILAE--ADNEWVVKLYYSFQD-KDNLYFVMDYIPGGDMMSLLIRMEVFPE  100 (381)
T ss_pred             CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh--cCCCCeeeeEEEEec-CCEEEEEEecCCCCcHHHHHHhcCCCCH
Confidence            466788999987532  33445566666666555  467777777665543 4578999999999999999887777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---------------------------  146 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---------------------------  146 (358)
                      ..++.++.|++.++.++|..+++||    +|||++.++.+||+|||++.....                           
T Consensus       101 ~~~~~~~~qi~~aL~~LH~~givHrDlKp~Nili~~~~~~kL~DFGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (381)
T cd05626         101 VLARFYIAELTLAIESVHKMGFIHRDIKPDNILIDLDGHIKLTDFGLCTGFRWTHNSKYYQKGSHIRQDSMEPSDLWDDV  180 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeecCCcHHHEEECCCCCEEEeeCcCCcccccccccccccccccccccccCcccccccc
Confidence            9999999999999999999999999    999999999999999999743210                           


Q ss_pred             -----------------------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcH
Q 045353          147 -----------------------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDE  203 (358)
Q Consensus       147 -----------------------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~  203 (358)
                                             .....+||+.|+|||++.+..|+.++|||||||++|+|++|..||...+      ..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~------~~  254 (381)
T cd05626         181 SNCRCGDRLKTLEQRATKQHQRCLAHSLVGTPNYIAPEVLLRKGYTQLCDWWSVGVILFEMLVGQPPFLAPT------PT  254 (381)
T ss_pred             cccccccccchhhccccccccccccccccCCccccCHHHHcCCCCCCccceeehhhHHHHHHhCCCCCcCCC------HH
Confidence                                   0123479999999999999889999999999999999999999997543      11


Q ss_pred             HHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhcccc--CCCCC
Q 045353          204 DHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDF--VPEKR  281 (358)
Q Consensus       204 ~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~--dP~~R  281 (358)
                      .....+...-...                                      ........++++.+||.+||..  +|..|
T Consensus       255 ~~~~~i~~~~~~~--------------------------------------~~~~~~~~s~~~~dli~~ll~~~~~~~~R  296 (381)
T cd05626         255 ETQLKVINWENTL--------------------------------------HIPPQVKLSPEAVDLITKLCCSAEERLGR  296 (381)
T ss_pred             HHHHHHHcccccc--------------------------------------CCCCCCCCCHHHHHHHHHHccCcccccCC
Confidence            2111111100000                                      0011123467899999996654  45559


Q ss_pred             CCHHHHhcCcCcCCC
Q 045353          282 PTAAQCLSHPWMSAG  296 (358)
Q Consensus       282 ~ta~elL~hpwf~~~  296 (358)
                      +|++++++||||...
T Consensus       297 ~~~~~~l~hp~f~~~  311 (381)
T cd05626         297 NGADDIKAHPFFSEV  311 (381)
T ss_pred             CCHHHHhcCcccCCC
Confidence            999999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, LATS2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS functions as a tumor suppressor and is implicated in cell cycle regulation. LATS2 is an essential mitotic regulator responsible for coordinating accurate cytokinesis completion and governing the stabilization of other mitotic regulators. It is also critical in the maintenance of proper chromosome number, genomic stability, mitotic fidelity, and the integrity of centrosome duplication. Downregulation of LATS2 is associated with po

>KOG0197 consensus Tyrosine kinases [Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-33  Score=258.80  Aligned_cols=214  Identities=19%  Similarity=0.217  Sum_probs=175.3

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~~~  100 (358)
                      ..||+|++..+..  .-..+.++++....  +.|..+|.++.+..... .+|||||||..|+|.+++..  ...+...+.
T Consensus       231 ~~vavk~ik~~~m--~~~~f~~Ea~iMk~--L~H~~lV~l~gV~~~~~-piyIVtE~m~~GsLl~yLr~~~~~~l~~~~L  305 (468)
T KOG0197|consen  231 TKVAVKTIKEGSM--SPEAFLREAQIMKK--LRHEKLVKLYGVCTKQE-PIYIVTEYMPKGSLLDYLRTREGGLLNLPQL  305 (468)
T ss_pred             CcccceEEecccc--ChhHHHHHHHHHHh--CcccCeEEEEEEEecCC-ceEEEEEecccCcHHHHhhhcCCCccchHHH
Confidence            3789999888622  22445588888877  57889999998887655 79999999999999999986  456788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCcc---CCCcchhHHHhCCCCCcch
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQ---TRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~g---t~~Y~aPE~l~~~~~~~~~  172 (358)
                      ..+..|+++|+.|+.++++|||    .||||+++..+||+|||+|+..... ++...|   ...|.|||.+....|+.++
T Consensus       306 l~~a~qIaeGM~YLes~~~IHRDLAARNiLV~~~~~vKIsDFGLAr~~~d~~Y~~~~~~kfPIkWtAPEa~~~~~FS~kS  385 (468)
T KOG0197|consen  306 LDFAAQIAEGMAYLESKNYIHRDLAARNILVDEDLVVKISDFGLARLIGDDEYTASEGGKFPIKWTAPEALNYGKFSSKS  385 (468)
T ss_pred             HHHHHHHHHHHHHHHhCCccchhhhhhheeeccCceEEEcccccccccCCCceeecCCCCCCceecCHHHHhhCCccccc
Confidence            9999999999999999999999    8999999999999999999965433 222233   4579999999999999999


Q ss_pred             hhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          173 DLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       173 DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      |||||||+||||+| |+.||.+.+      ..+.+..+.+-.                                      
T Consensus       386 DVWSFGVlL~E~fT~G~~py~~ms------n~ev~~~le~Gy--------------------------------------  421 (468)
T KOG0197|consen  386 DVWSFGVLLWELFTYGRVPYPGMS------NEEVLELLERGY--------------------------------------  421 (468)
T ss_pred             ceeehhhhHHHHhccCCCCCCCCC------HHHHHHHHhccC--------------------------------------
Confidence            99999999999998 889987665      344444443222                                      


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                         ..+.|..++..+.+++..||..+|++|||++.+.
T Consensus       422 ---Rlp~P~~CP~~vY~lM~~CW~~~P~~RPtF~~L~  455 (468)
T KOG0197|consen  422 ---RLPRPEGCPDEVYELMKSCWHEDPEDRPTFETLR  455 (468)
T ss_pred             ---cCCCCCCCCHHHHHHHHHHhhCCcccCCCHHHHH
Confidence               2244677889999999999999999999998664

>cd07863 STKc_CDK4 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 4

Probab=100.00  E-value=3.2e-33  Score=252.40  Aligned_cols=251  Identities=22%  Similarity=0.226  Sum_probs=179.1

Q ss_pred             ccCcccccccccCccchhh-hHHhhHHHHHhhhhc-cCCCccccccCCCCC----CCCCCCcccccCCCCCcccccccc-
Q 045353           20 ESSASKENKSLYGDLTKNQ-KKKVKKKAKKAAQGC-AGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDS-   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~-   92 (358)
                      .+|..+|+|.+......+. .....++......+. ..|++++........    .....++||||+.+ +|.+++... 
T Consensus        23 ~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~  101 (288)
T cd07863          23 HSGHFVALKSVRVQTNEDGLPLSTVREVALLKRLEAFDHPNIVRLMDVCATSRTDRETKVTLVFEHVDQ-DLRTYLDKVP  101 (288)
T ss_pred             CCCcEEEEEEeccCcCCCCCchHHHHHHHHHHHhhhcCCCCeeeeeeeeccccCCCCceEEEEEccccc-CHHHHHHhcC
Confidence            4677888998775443332 223334443333321 356777766654322    23557899999996 777766542 


Q ss_pred             -cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhC
Q 045353           93 -VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 -~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~  165 (358)
                       ..+++.++..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||++......  .....||..|+|||++.+
T Consensus       102 ~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (288)
T cd07863         102 PPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGQVKLADFGLARIYSCQMALTPVVVTLWYRAPEVLLQ  181 (288)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccCccccccCcccCCCccccccccCchHhhC
Confidence             347888999999999999999999999999    9999999999999999999765432  344578999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC-hhhhhccCCchhhhhcc
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS-RDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~  244 (358)
                      ..++.++||||+||++|+|++|.+||.+..      ..+.+..+....+.+....+...... ...+...         .
T Consensus       182 ~~~~~~~DiwslG~~l~~l~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~  246 (288)
T cd07863         182 STYATPVDMWSVGCIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVTLPRGAFSPR---------G  246 (288)
T ss_pred             CCCCCcchhhhHHHHHHHHHhCCcCcCCCC------HHHHHHHHHHHhCCCChhhCcccccccccccCCC---------C
Confidence            889999999999999999999999997654      56677777777776554333211000 0000000         0


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                         .    .......+..+..+.+||.+||++||++|||+.|++.||||
T Consensus       247 ---~----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~~~l~hp~f  288 (288)
T cd07863         247 ---P----RPVQSVVPEIEESGAQLLLEMLTFNPHKRISAFRALQHPFF  288 (288)
T ss_pred             ---C----CchHHhCcCcCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence               0    00011123346778999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 partners with all three D-type cyclins (D1, D2, and D3) and is also regulated by INK4 inhibitors. It is active towards the retinoblastoma (pRb) protein and plays a role in regulating the early G1 phase of the cell cycle. It is expressed ubiquitou

>KOG0986 consensus G protein-coupled receptor kinase [Signal transduction mechanisms]

Probab=100.00  E-value=9.8e-34  Score=253.31  Aligned_cols=230  Identities=18%  Similarity=0.213  Sum_probs=182.2

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhc----------cCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGC----------AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      +.+.|++.-++.+..-++...||.+|+.+...          .+...+|.+.....+.+ .+++||.+|+||+|.-.+-+
T Consensus       200 EV~acqvraTGKMYAcKkL~KKRiKkr~ge~maLnEk~iL~kV~s~FiVslaYAfeTkd-~LClVLtlMNGGDLkfHiyn  278 (591)
T KOG0986|consen  200 EVCACQVRATGKMYACKKLDKKRIKKRKGETMALNEKQILEKVSSPFIVSLAYAFETKD-ALCLVLTLMNGGDLKFHIYN  278 (591)
T ss_pred             ceeEEEEecchhhHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhccCcEEEEeeeecCCC-ceEEEEEeecCCceeEEeec
Confidence            45889999999888766544444443333111          23336777777666654 68899999999999998877


Q ss_pred             cc--ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHH
Q 045353           92 SV--VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        92 ~~--~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l  163 (358)
                      .+  .+++..+..+..+|+-|+..+|..+|+-|    +|||+|+.|+|+|+|+|+|....  ......+||.+|||||++
T Consensus       279 ~g~~gF~e~ra~FYAAEi~cGLehlH~~~iVYRDLKPeNILLDd~GhvRISDLGLAvei~~g~~~~~rvGT~GYMAPEvl  358 (591)
T KOG0986|consen  279 HGNPGFDEQRARFYAAEIICGLEHLHRRRIVYRDLKPENILLDDHGHVRISDLGLAVEIPEGKPIRGRVGTVGYMAPEVL  358 (591)
T ss_pred             cCCCCCchHHHHHHHHHHHhhHHHHHhcceeeccCChhheeeccCCCeEeeccceEEecCCCCccccccCcccccCHHHH
Confidence            66  78999999999999999999999999955    99999999999999999997654  445667999999999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          164 LGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      .+..|+..+|+|||||++|+|+.|+.||........   .+.+                                     
T Consensus       359 ~ne~Y~~s~Dwf~lGCllYemi~G~sPFr~~KeKvk---~eEv-------------------------------------  398 (591)
T KOG0986|consen  359 QNEVYDFSPDWFSLGCLLYEMIAGHSPFRQRKEKVK---REEV-------------------------------------  398 (591)
T ss_pred             cCCcccCCccHHHHHhHHHHHHcccCchhhhhhhhh---HHHH-------------------------------------
Confidence            999999999999999999999999999975442110   0000                                     


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                          ..++......+++.+++++++|++.+|+.||++|.     +++++.+||||++-
T Consensus       399 ----drr~~~~~~ey~~kFS~eakslc~~LL~Kdp~~RLGcrg~ga~evk~HpfFk~l  452 (591)
T KOG0986|consen  399 ----DRRTLEDPEEYSDKFSEEAKSLCEGLLTKDPEKRLGCRGEGAQEVKEHPFFKDL  452 (591)
T ss_pred             ----HHHHhcchhhcccccCHHHHHHHHHHHccCHHHhccCCCcCcchhhhCcccccC
Confidence                12233334456778899999999999999999998     57899999999974

>KOG0586 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=5e-34  Score=264.47  Aligned_cols=230  Identities=17%  Similarity=0.231  Sum_probs=191.9

Q ss_pred             cccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|..||+|......-.. .+.++.|+.+....  +.|++|+.++..-.+. ..+|+||||+.||++++++.......+
T Consensus        78 ~~t~~~VaiK~idkt~ln~~~~~k~~rev~imk~--l~HPnIvkl~~v~~t~-~~lylV~eya~~ge~~~yl~~~gr~~e  154 (596)
T KOG0586|consen   78 ILTGTEVAIKIIDKTQLNPSKRQKLGREVDIMKS--LNHPNIVKLFSVIETE-ATLYLVMEYASGGELFDYLVKHGRMKE  154 (596)
T ss_pred             cCCCceEEEEEehhcccChHHHHHHHHHHHHHHh--cCCcceeeeeeeeeec-ceeEEEEEeccCchhHHHHHhcccchh
Confidence            5678899999666543222 22445555555444  6899999998877654 579999999999999999999999999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCC-Cc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKY-ST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~-~~  170 (358)
                      ..++.++.|+++++.|+|+.+++||    +||||+.+.++||+|||++.+..  ....+.||++.|.|||+..|..| ++
T Consensus       155 ~~ar~~F~q~vsaveYcH~k~ivHrdLk~eNilL~~~mnikIaDfgfS~~~~~~~~lqt~cgsppyAaPEl~~g~~y~gp  234 (596)
T KOG0586|consen  155 KEARAKFRQIVSAVEYCHSKNIVHRDLKAENILLDENMNIKIADFGFSTFFDYGLMLQTFCGSPPYAAPELFNGKKYDGP  234 (596)
T ss_pred             hhhhhhhHHHHHHHHHHhhcceeccccchhhcccccccceeeeccccceeecccccccccCCCCCccChHhhcCcccCCc
Confidence            9999999999999999999999999    99999999999999999997764  34677899999999999999887 88


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      .+|+||+|+++|.|+.|..||++.+-...                                                ..+
T Consensus       235 e~D~Wslgvvly~LV~GsLPFDG~~lk~L------------------------------------------------r~r  266 (596)
T KOG0586|consen  235 EVDIWSLGVVLYALVEGSLPFDGQNLKEL------------------------------------------------RPR  266 (596)
T ss_pred             ceehhhhhhhheeeeecccccCCcccccc------------------------------------------------cch
Confidence            89999999999999999999987652111                                                223


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      .+...+..+..++.++.+||+++|..+|.+|+++++++.|.|.+.+...
T Consensus       267 vl~gk~rIp~~ms~dce~lLrk~lvl~Pskr~~~dqim~~~W~n~~~~~  315 (596)
T KOG0586|consen  267 VLRGKYRIPFYMSCDCEDLLRKFLVLNPSKRGPCDQIMKDRWRNDLLEA  315 (596)
T ss_pred             heeeeecccceeechhHHHHHHhhccCccccCCHHHhhhhcccchhhhh
Confidence            4445566677778899999999999999999999999999999876443

>cd05582 STKc_RSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, 90 kDa ribosomal protein S6 kinase

Probab=100.00  E-value=4.1e-34  Score=262.08  Aligned_cols=226  Identities=17%  Similarity=0.212  Sum_probs=177.1

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|++..... ...+.++.++.+...+  +.|++++....... .....|+||||++||+|.+++.....+++.
T Consensus        22 ~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~   98 (318)
T cd05582          22 DAGQLYAMKVLKKATLKVRDRVRTKMERDILAE--VNHPFIVKLHYAFQ-TEGKLYLILDFLRGGDLFTRLSKEVMFTEE   98 (318)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHh--CCCCCcccEEEEEE-cCCEEEEEEcCCCCCcHHHHHHHcCCCCHH
Confidence            4677889998875432 2234455555555544  46777777765543 346789999999999999998877778999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......   ....+||+.|+|||++.+..++.+
T Consensus        99 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~  178 (318)
T cd05582          99 DVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS  178 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEecCCCCHHHeEECCCCcEEEeeccCCcccCCCCCceecccCChhhcCHHHHcCCCCCCc
Confidence            999999999999999999999999    8999999999999999999764322   334579999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|+.||.+.+      .......+..                                        
T Consensus       179 ~DiwslG~il~el~tg~~p~~~~~------~~~~~~~i~~----------------------------------------  212 (318)
T cd05582         179 ADWWSFGVLMFEMLTGSLPFQGKD------RKETMTMILK----------------------------------------  212 (318)
T ss_pred             cceeccceEeeeeccCCCCCCCCC------HHHHHHHHHc----------------------------------------
Confidence            999999999999999999996543      2222222211                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                        ....++...++.+.+||.+||+.||++|||     +.+++.||||...
T Consensus       213 --~~~~~p~~~~~~~~~li~~~l~~~P~~R~~a~~~~~~~~~~~~~~~~~  260 (318)
T cd05582         213 --AKLGMPQFLSPEAQSLLRALFKRNPANRLGAGPDGVEEIKRHPFFSTI  260 (318)
T ss_pred             --CCCCCCCCCCHHHHHHHHHHhhcCHhHcCCCCCCCHHHHhCCCCcCCC
Confidence              111233445778899999999999999999     7789999999863

Serine/Threonine Kinases (STKs), 90 kDa ribosomal protein S6 kinase (RSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. RSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family. They are activated by signaling inputs from extracellular regulated kinase (ERK) and phosphoinositide dependent kinase 1 (PDK1). ERK phosphorylates and activates the CTD of RSK, serving as a docking site for PDK1, which phosphorylates and activates the NTD, which in turn phosphorylate

>cd05598 STKc_LATS Catalytic domain of the Protein Serine/Threonine Kinase, Large Tumor Suppressor

Probab=100.00  E-value=6.6e-34  Score=266.72  Aligned_cols=229  Identities=19%  Similarity=0.197  Sum_probs=172.2

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+....  ...+...++++.+....  +.+++++....... ....+|+|||||+||+|.+++.....+.+
T Consensus        24 ~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~--l~h~~iv~~~~~~~-~~~~~~lv~E~~~~g~L~~~i~~~~~~~~  100 (376)
T cd05598          24 DTNALYAMKTLRKADVLMRNQAAHVKAERDILAE--ADNEWVVKLYYSFQ-DKDNLYFVMDYIPGGDMMSLLIRLGIFEE  100 (376)
T ss_pred             CCCCEEEEEEEcHHHHHhhhhHHHHHHHHHHHHh--CCCCCcceEEEEEE-cCCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            456788999886532  23344556666655555  35677777665543 35688999999999999999988778888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---------------------------  146 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---------------------------  146 (358)
                      ..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....                           
T Consensus       101 ~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~ikL~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (376)
T cd05598         101 DLARFYIAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQKGDHHRQDSMEPSEEWSEI  180 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCCHHHEEECCCCCEEEEeCCCCcccccccccccccccccccccccccccccccc
Confidence            8999999999999999999999999    999999999999999999742110                           


Q ss_pred             -------------------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHH
Q 045353          147 -------------------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLA  207 (358)
Q Consensus       147 -------------------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~  207 (358)
                                         .....+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      ..+...
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~  254 (376)
T cd05598         181 DRCRLKPLERRRKRQHQRCLAHSLVGTPNYIAPEVLLRTGYTQLCDWWSVGVILYEMLVGQPPFLADT------PAETQL  254 (376)
T ss_pred             ccccccchhhhhhhhcccccccccCCCccccCHHHHcCCCCCcceeeeeccceeeehhhCCCCCCCCC------HHHHHH
Confidence                               0113479999999999999999999999999999999999999997543      122211


Q ss_pred             HHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC---CH
Q 045353          208 LMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP---TA  284 (358)
Q Consensus       208 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~---ta  284 (358)
                      .+.......                                      ........++.+.+||.+|+ .+|.+|+   |+
T Consensus       255 ~i~~~~~~~--------------------------------------~~~~~~~~s~~~~~li~~l~-~~p~~R~~~~t~  295 (376)
T cd05598         255 KVINWETTL--------------------------------------HIPSQAKLSREASDLILRLC-CGAEDRLGKNGA  295 (376)
T ss_pred             HHhccCccc--------------------------------------cCCCCCCCCHHHHHHHHHHh-cCHhhcCCCCCH
Confidence            111000000                                      00111234678889999976 5999999   99


Q ss_pred             HHHhcCcCcCCC
Q 045353          285 AQCLSHPWMSAG  296 (358)
Q Consensus       285 ~elL~hpwf~~~  296 (358)
                      .++++||||...
T Consensus       296 ~ell~h~~~~~~  307 (376)
T cd05598         296 DEIKAHPFFKGI  307 (376)
T ss_pred             HHHhCCCCcCCC
Confidence            999999999863

Serine/Threonine Kinases (STKs), Large Tumor Suppressor (LATS) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The LATS subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. LATS was originally identified in Drosophila using a screen for genes whose inactivation led to overproliferation of cells. In tetrapods, there are two LATS isoforms, LATS1 and LATS2. Inactivation of LATS1 in mice results in the development of various tumors, including sarcomas and ovarian cancer. LATS functions as a tumor suppressor and is implicated in cell cycle regulation.

>KOG0589 consensus Serine/threonine protein kinase [General function prediction only]

Probab=100.00  E-value=1.1e-33  Score=258.15  Aligned_cols=194  Identities=20%  Similarity=0.232  Sum_probs=166.4

Q ss_pred             cCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccChhhhhHHHHhhhhccccccCCCCCCc----ccccc
Q 045353           54 AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA  127 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl  127 (358)
                      ..|++|+.-.+.....+..++|||+||+||++.+.+...  ..+.+.++..++.|++.++.|+|...+.||    .||++
T Consensus        60 ~~hP~iv~y~ds~~~~~~~l~Ivm~Y~eGg~l~~~i~~~k~~~f~E~~i~~~~~Q~~~av~ylH~~~iLHRDlK~~Nifl  139 (426)
T KOG0589|consen   60 LLHPNIVEYKDSFEEDGQLLCIVMEYCEGGDLAQLIKEQKGVLFPEERILKWFVQILLAVNYLHENRVLHRDLKCANIFL  139 (426)
T ss_pred             ccCCCeeeeccchhcCCceEEEEEeecCCCCHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhhhhhcccchhhhhhc
Confidence            577888888777777666699999999999999988743  568889999999999999999999999999    89999


Q ss_pred             cCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHH
Q 045353          128 AVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDED  204 (358)
Q Consensus       128 ~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~  204 (358)
                      +.++.|||+|||+|+.....   ..+.+||+.||+||++.+.+|+.++|||||||++|||++-+++|.+.+      -..
T Consensus       140 tk~~~VkLgDfGlaK~l~~~~~~a~tvvGTp~YmcPEil~d~pYn~KSDiWsLGC~~yEm~~lk~aF~a~~------m~~  213 (426)
T KOG0589|consen  140 TKDKKVKLGDFGLAKILNPEDSLASTVVGTPYYMCPEILSDIPYNEKSDIWSLGCCLYEMCTLKPAFKASN------MSE  213 (426)
T ss_pred             cccCceeecchhhhhhcCCchhhhheecCCCcccCHHHhCCCCCCccCcchhhcchHHHHHhcccccCccc------hHH
Confidence            99999999999999987654   356799999999999999999999999999999999999999998665      223


Q ss_pred             HHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH
Q 045353          205 HLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA  284 (358)
Q Consensus       205 ~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta  284 (358)
                      .+..|.+...                                         .+.+...+.+++.||..||..+|..||++
T Consensus       214 Li~ki~~~~~-----------------------------------------~Plp~~ys~el~~lv~~~l~~~P~~RPsa  252 (426)
T KOG0589|consen  214 LILKINRGLY-----------------------------------------SPLPSMYSSELRSLVKSMLRKNPEHRPSA  252 (426)
T ss_pred             HHHHHhhccC-----------------------------------------CCCCccccHHHHHHHHHHhhcCCccCCCH
Confidence            3333333221                                         13455568899999999999999999999


Q ss_pred             HHHhcCcCcC
Q 045353          285 AQCLSHPWMS  294 (358)
Q Consensus       285 ~elL~hpwf~  294 (358)
                      .++|.+|.+.
T Consensus       253 ~~LL~~P~l~  262 (426)
T KOG0589|consen  253 LELLRRPHLL  262 (426)
T ss_pred             HHHhhChhhh
Confidence            9999999886

>cd05601 STKc_CRIK Catalytic domain of the Protein Serine/Threonine Kinase, Citron Rho-interacting kinase

Probab=100.00  E-value=8.9e-34  Score=261.21  Aligned_cols=229  Identities=16%  Similarity=0.204  Sum_probs=171.6

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccC
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~   96 (358)
                      .+|..+|+|.+.....  ....+.+.++.+....  ..+++++....... .....|+||||++||+|.+++... ..+.
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~--~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~l~  100 (330)
T cd05601          24 ATGDIYAMKVMKKSVLLAQETVSFFEEERDILSI--SNSPWIPQLQYAFQ-DKDNLYLVMEYQPGGDLLSLLNRYEDQFD  100 (330)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHh--CCCCCCcceeeEEe-cCCeEEEEECCCCCCCHHHHHHHhcCCCC
Confidence            4567889998876543  2334445555554444  45666666654433 345789999999999999998765 5688


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHh----
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLL----  164 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~----  164 (358)
                      +..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||+|......    ....+||+.|+|||++.    
T Consensus       101 ~~~~~~~~~qi~~aL~~lH~~~i~H~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  180 (330)
T cd05601         101 EDMAQFYLAELVLAIHSVHQMGYVHRDIKPENVLIDRTGHIKLADFGSAARLTANKMVNSKLPVGTPDYIAPEVLTTMNG  180 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeEcccCchHheEECCCCCEEeccCCCCeECCCCCceeeecccCCccccCHHHhccccc
Confidence            88999999999999999999999999    9999999999999999999765432    12347999999999997    


Q ss_pred             --CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          165 --GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       165 --~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                        +..++.++|||||||++|+|++|..||...+      .......+.......                          
T Consensus       181 ~~~~~~~~~~DiwslG~il~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~--------------------------  228 (330)
T cd05601         181 DGKGTYGVECDWWSLGVIAYEMIYGRSPFHEGT------SAKTYNNIMNFQRFL--------------------------  228 (330)
T ss_pred             cccCCCCCcceeecccceeeeeccCCCCCCCCC------HHHHHHHHHcCCCcc--------------------------
Confidence              3457899999999999999999999996543      222222221110000                          


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                  .+......+..+.+||.+||. ||.+|||+.++++||||...
T Consensus       229 ------------~~~~~~~~~~~~~~li~~ll~-~p~~R~t~~~l~~h~~~~~~  269 (330)
T cd05601         229 ------------KFPEDPKVSSDFLDLIQSLLC-GQKERLGYEGLCCHPFFSKI  269 (330)
T ss_pred             ------------CCCCCCCCCHHHHHHHHHHcc-ChhhCCCHHHHhCCCCcCCC
Confidence                        001112346789999999998 99999999999999999863

Serine/Threonine Kinases (STKs), Citron Rho-interacting kinase (CRIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CRIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CRIK is also called citron kinase. It contains a catalytic domain, a central coiled-coil domain, and a C-terminal region containing a Rho-binding domain (RBD), a zinc finger, and a pleckstrin homology (PH) domain, in addition to other motifs. CRIK, an effector of the small GTPase Rho, plays an important function during cytokinesis and affects its contractile process. CRIK-deficient mice show severe ataxia and epilepsy as a result of abnor

>cd05604 STKc_SGK3 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 3

Probab=100.00  E-value=3e-34  Score=263.75  Aligned_cols=227  Identities=15%  Similarity=0.122  Sum_probs=173.1

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......+  ..+++.++.....+. ..|++++....... .....|+||||+.||+|..++.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~-~~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   95 (325)
T cd05604          18 LDGKCYAVKVLQKKIVLNRKEQKHIMAERNVLLKN-VKHPFLVGLHYSFQ-TTEKLYFVLDFVNGGELFFHLQRERSFPE   95 (325)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHHh-CCCCCCccEEEEEe-cCCEEEEEEcCCCCCCHHHHHHHcCCCCH
Confidence            467789999987654322  223333333322222 46677777654443 34578999999999999998887778889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~al~~lH~~givH~Dlkp~NIll~~~~~~kL~DfG~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (325)
T cd05604          96 PRARFYAAEIASALGYLHSINIVYRDLKPENILLDSQGHVVLTDFGLCKEGIAQSDTTTTFCGTPEYLAPEVIRKQPYDN  175 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEEeecCCcccCCCCCCCcccccCChhhCCHHHHcCCCCCC
Confidence            9999999999999999999999999    99999999999999999986532   2234557999999999999989999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||...+      .......+.   .                                    
T Consensus       176 ~~DvwslG~il~el~~G~~pf~~~~------~~~~~~~~~---~------------------------------------  210 (325)
T cd05604         176 TVDWWCLGAVLYEMLYGLPPFYCRD------VAEMYDNIL---H------------------------------------  210 (325)
T ss_pred             cCccccccceehhhhcCCCCCCCCC------HHHHHHHHH---c------------------------------------
Confidence            9999999999999999999997543      111111111   0                                    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf~~~  296 (358)
                         .....++..+..+.++|.+||+.||.+||++    .+++.||||...
T Consensus       211 ---~~~~~~~~~~~~~~~ll~~ll~~~p~~R~~~~~~~~~i~~h~~f~~~  257 (325)
T cd05604         211 ---KPLVLRPGASLTAWSILEELLEKDRQRRLGAKEDFLEIQEHPFFESL  257 (325)
T ss_pred             ---CCccCCCCCCHHHHHHHHHHhccCHHhcCCCCCCHHHHhcCCCcCCC
Confidence               0111223346788899999999999999976    599999999863

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3 (also called cytokine-independent survival kinase CISK). SGK3 is expressed in most tissues and is most abundant in the embryo and adult heart and spleen. It was originally discovered in a screen for antiapoptotic genes. It phosphorylates and inhibits the proapoptotic proteins, Bad and FKHRL1. SGK3 also regulates many transporters, ion channels,

>cd05627 STKc_NDR2 Catalytic domain of the Protein Serine/Threonine Kinase, Nuclear Dbf2-Related kinase 2

Probab=100.00  E-value=1e-33  Score=263.86  Aligned_cols=229  Identities=17%  Similarity=0.188  Sum_probs=172.0

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+....  .......++++.+...+  ..+++++....... .....|+|||||+||+|.+++.....+.+
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~iv~~~~~~~-~~~~~~lv~E~~~gg~L~~~l~~~~~l~~  100 (360)
T cd05627          24 DTGHIYAMKILRKADMLEKEQVAHIRAERDILVE--ADGAWVVKMFYSFQ-DKRNLYLIMEFLPGGDMMTLLMKKDTLSE  100 (360)
T ss_pred             CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh--CCCCCEeeEEEEEE-cCCEEEEEEeCCCCccHHHHHHhcCCCCH
Confidence            457788999887532  23344556666555544  35666666655433 34578999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------------------
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------------------  147 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------------------  147 (358)
                      ..+..++.+++.++.++|+.+++||    +|||++.++.+||+|||++......                          
T Consensus       101 ~~~~~~~~qi~~~L~~lH~~givHrDLkp~NIli~~~~~vkL~DfG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (360)
T cd05627         101 EATQFYIAETVLAIDAIHQLGFIHRDIKPDNLLLDAKGHVKLSDFGLCTGLKKAHRTEFYRNLTHNPPSDFSFQNMNSKR  180 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEccCCCHHHEEECCCCCEEEeeccCCcccccccccccccccccCCccccccccccccc
Confidence            9999999999999999999999999    9999999999999999998643210                          


Q ss_pred             ------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCC
Q 045353          148 ------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM  215 (358)
Q Consensus       148 ------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~  215 (358)
                                  ....+||+.|+|||++.+..|+.++|||||||++|+|++|.+||.+.+      .......+......
T Consensus       181 ~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~DiwSlGvilyel~tG~~Pf~~~~------~~~~~~~i~~~~~~  254 (360)
T cd05627         181 KAETWKKNRRQLAYSTVGTPDYIAPEVFMQTGYNKLCDWWSLGVIMYEMLIGYPPFCSET------PQETYRKVMNWKET  254 (360)
T ss_pred             ccccccccccccccccCCCccccCHHHHcCCCCCCcceeccccceeeecccCCCCCCCCC------HHHHHHHHHcCCCc
Confidence                        123479999999999999999999999999999999999999997543      12222222110000


Q ss_pred             CchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC---CHHHHhcCcC
Q 045353          216 MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP---TAAQCLSHPW  292 (358)
Q Consensus       216 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~---ta~elL~hpw  292 (358)
                      .                                      .+......+..+.+||.+|+. ||.+|+   ++.++++|||
T Consensus       255 ~--------------------------------------~~p~~~~~s~~~~~li~~l~~-~p~~R~~~~~~~ei~~hp~  295 (360)
T cd05627         255 L--------------------------------------VFPPEVPISEKAKDLILRFCT-DSENRIGSNGVEEIKSHPF  295 (360)
T ss_pred             e--------------------------------------ecCCCCCCCHHHHHHHHHhcc-ChhhcCCCCCHHHHhcCCC
Confidence            0                                      000011246788999999874 999998   4899999999


Q ss_pred             cCCC
Q 045353          293 MSAG  296 (358)
Q Consensus       293 f~~~  296 (358)
                      |.+.
T Consensus       296 f~~~  299 (360)
T cd05627         296 FEGV  299 (360)
T ss_pred             CCCC
Confidence            9874

Serine/Threonine Kinases (STKs), NDR kinase subfamily, NDR2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The NDR subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. NDR kinase contains an N-terminal regulatory (NTR) domain and an insert within the catalytic domain that contains an auto-inhibitory sequence. Like many other AGC kinases, NDR kinase requires phosphorylation at two sites, the activation loop (A-loop) and the hydrophobic motif (HM), for activity. Higher eukaryotes contain two NDR isoforms, NDR1 and NDR2. Both isoforms play a role in proper centrosome duplication. In addition, NDR2 plays a role in regul

>cd05586 STKc_Sck1_like Catalytic domain of Suppressor of loss of cAMP-dependent protein kinase-like Protein Serine/Threonine Kinases

Probab=100.00  E-value=8.2e-34  Score=261.44  Aligned_cols=228  Identities=18%  Similarity=0.201  Sum_probs=167.1

Q ss_pred             ccCcccccccccCccchhhh--HHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKNQK--KKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++........+  .+..++........ ..+++++........ ....|+||||+.||+|.+++.....+.
T Consensus        16 ~~~~~~avK~~~~~~~~~~~~~~~~~~e~~~l~~~~~~~~p~i~~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~   94 (330)
T cd05586          16 DTRRIYAMKVLSKKEIVAKKEVAHTIGERNILVRTLLDESPFIVGLKFSFQT-DSDLYLVTDYMSGGELFWHLQKEGRFS   94 (330)
T ss_pred             CCCCEEEEEEEeHHHHhhhhHHHHHHHHHHHHHHhccCCCCcCcceEEEEec-CCeEEEEEcCCCCChHHHHHHhcCCCC
Confidence            45778899988643222211  11222222222211 145566665544332 457899999999999999888878889


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      +..+..++.|++.++.|+|+.+++||    +|||++.++.+||+|||++....   ......+||+.|+|||++.+.. +
T Consensus        95 ~~~~~~~~~qil~al~~LH~~~ivHrDlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  174 (330)
T cd05586          95 EDRAKFYIAELVLALEHLHKYDIVYRDLKPENILLDATGHIALCDFGLSKANLTDNKTTNTFCGTTEYLAPEVLLDEKGY  174 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEecCCcCcCCCCCCCCccCccCCccccCHHHHcCCCCC
Confidence            99999999999999999999999999    99999999999999999986532   2234568999999999998754 8


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+..      .......+.  .+                                  
T Consensus       175 ~~~~DvwslGvil~elltG~~Pf~~~~------~~~~~~~i~--~~----------------------------------  212 (330)
T cd05586         175 TKHVDFWSLGVLVFEMCCGWSPFYAED------TQQMYRNIA--FG----------------------------------  212 (330)
T ss_pred             CCccceeccccEEEEeccCCCCCCCCC------HHHHHHHHH--cC----------------------------------
Confidence            999999999999999999999996543      111111111  00                                  


Q ss_pred             hhhHHhhhcCC-hhhHHHHHHHHHhccccCCCCCC----CHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFN-ERDAKDMADFLVPILDFVPEKRP----TAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~R~----ta~elL~hpwf~~~  296 (358)
                            ...++ ...+..+.+||.+||..||.+||    ++.++++||||...
T Consensus       213 ------~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~ll~h~~~~~~  259 (330)
T cd05586         213 ------KVRFPKNVLSDEGRQFVKGLLNRNPQHRLGAHRDAVELKEHPFFADI  259 (330)
T ss_pred             ------CCCCCCccCCHHHHHHHHHHcCCCHHHCCCCCCCHHHHhcCccccCC
Confidence                  00111 12367888999999999999998    79999999999863

Serine/Threonine Kinases (STKs), Fission yeast Suppressor of loss of cAMP-dependent protein kinase (Sck1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sck1-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of fungal proteins with similarity to the Schizosaccharomyces pombe STK Sck1. Sck1 plays a role in trehalase activation triggered by glucose and a nitrogen source. Trehalase catalyzes the cleavage of the disaccharide trehalose to glucose. Trehalose, as a carbohydrate reserve and stress metabolite, plays an important role in the response of

>cd05596 STKc_ROCK Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase

Probab=100.00  E-value=2.8e-33  Score=261.68  Aligned_cols=229  Identities=17%  Similarity=0.163  Sum_probs=168.4

Q ss_pred             ccCcccccccccCcc-c-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL-T-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+...- . ......+.++.+....  ..+++++....... .....|+|||||+||+|.+++... .+.+
T Consensus        66 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~il~~--~~h~~iv~~~~~~~-~~~~~~lv~Ey~~gg~L~~~l~~~-~l~~  141 (370)
T cd05596          66 SSKQVYAMKLLSKFEMIKRSDSAFFWEERDIMAH--ANSEWIVQLHYAFQ-DDKYLYMVMEYMPGGDLVNLMSNY-DIPE  141 (370)
T ss_pred             CCCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh--CCCCCcceEEEEEe-cCCEEEEEEcCCCCCcHHHHHHhc-CCCH
Confidence            356678999886432 1 1222334444444443  45667776654433 345789999999999999988653 4677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCC---
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS---  166 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~---  166 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||++......    ....+||+.|+|||++.+.   
T Consensus       142 ~~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~kL~DfG~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  221 (370)
T cd05596         142 KWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMDANGMVRCDTAVGTPDYISPEVLKSQGGD  221 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEcCCCCEEEEeccceeeccCCCcccCCCCCCCcCeECHHHhccCCCC
Confidence            8888899999999999999999999    9999999999999999999765422    2345799999999999764   


Q ss_pred             -CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 -~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                       .++.++|||||||++|+|++|.+||.+.+      .......+.......                             
T Consensus       222 ~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~-----------------------------  266 (370)
T cd05596         222 GYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMDHKNSL-----------------------------  266 (370)
T ss_pred             CCCCCceeeeehhHHHHHHHhCCCCcCCCC------HHHHHHHHHcCCCcC-----------------------------
Confidence             37899999999999999999999997544      112222221100000                             


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                               .+......+..+.+||.+||..+|.+  |+|++++++||||+..
T Consensus       267 ---------~~~~~~~~s~~~~~li~~~L~~~p~r~~R~s~~ell~h~~~~~~  310 (370)
T cd05596         267 ---------TFPDDIEISKQAKDLICAFLTDREVRLGRNGVDEIKSHPFFKND  310 (370)
T ss_pred             ---------CCCCcCCCCHHHHHHHHHHccChhhccCCCCHHHHhcCcccCCC
Confidence                     00111234788999999999999998  9999999999999874

Serine/Threonine Kinases (STKs), Rho-associated coiled-coil containing protein kinase (ROCK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK is also referred to as Rho-associated kinase or simply as Rho kinase. It contains an N-terminal extension, a catalytic kinase domain, and a long C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain. It is activated via in

>cd05621 STKc_ROCK2 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 2

Probab=100.00  E-value=5.1e-33  Score=259.71  Aligned_cols=228  Identities=17%  Similarity=0.154  Sum_probs=167.5

Q ss_pred             cCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|.+....  .......+.++.+....  ..|++++....... .....|+|||||+||+|.+++... .+.+.
T Consensus        67 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~i~~~--~~hp~iv~~~~~~~-~~~~~~lv~Ey~~gg~L~~~l~~~-~~~~~  142 (370)
T cd05621          67 SQKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF--ANSPWVVQLFCAFQ-DDKYLYMVMEYMPGGDLVNLMSNY-DVPEK  142 (370)
T ss_pred             CCCEEEEEEEEHHHhhhhhhHHHHHHHHHHHHh--CCCCCEeeEEEEEE-cCCEEEEEEcCCCCCcHHHHHHhc-CCCHH
Confidence            46678888876422  22223334444444433  46777777665443 346789999999999999988654 46788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC---
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK---  167 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~---  167 (358)
                      .+..++.+++.++.++|+.+++||    +|||++.++.+||+|||+|......    ....+||+.|+|||++.+..   
T Consensus       143 ~~~~~~~qil~aL~~LH~~~IvHrDLKp~NILl~~~~~~kL~DFG~a~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~  222 (370)
T cd05621         143 WAKFYTAEVVLALDAIHSMGLIHRDVKPDNMLLDKHGHLKLADFGTCMKMDETGMVRCDTAVGTPDYISPEVLKSQGGDG  222 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEEecccceecccCCceecccCCCCcccCCHHHHhccCCCC
Confidence            899999999999999999999999    9999999999999999999765422    23557999999999998643   


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++||||+||++|+|++|..||.+.+      .......+......+                              
T Consensus       223 ~~~~~~DiwSlG~ilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~------------------------------  266 (370)
T cd05621         223 YYGRECDWWSVGVFLFEMLVGDTPFYADS------LVGTYSKIMDHKNSL------------------------------  266 (370)
T ss_pred             CCCcccCEEeehHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCccc------------------------------
Confidence             7889999999999999999999997543      222222222110000                              


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                              .++.....+..+.+||.+||..++.+  |+|+.|+++||||+..
T Consensus       267 --------~~p~~~~~s~~~~~li~~~L~~~~~r~~R~~~~e~l~hp~~~~~  310 (370)
T cd05621         267 --------NFPEDVEISKHAKNLICAFLTDREVRLGRNGVEEIKQHPFFKND  310 (370)
T ss_pred             --------CCCCcccCCHHHHHHHHHHccCchhccCCCCHHHHhcCcccCCC
Confidence                    00111234678899999999865544  8999999999999864

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK2 (or ROK-alpha) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK2 was the first identified target of activated RhoA, and was found

>cd06650 PKc_MEK1 Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase 1

Probab=100.00  E-value=3.7e-33  Score=257.34  Aligned_cols=262  Identities=17%  Similarity=0.151  Sum_probs=179.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..+++|.+..........++.++.+...++  .|++++....... .+...|+||||+.||+|.+++.....+.+..+
T Consensus        29 ~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  105 (333)
T cd06650          29 SGLIMARKLIHLEIKPAIRNQIIRELQVLHEC--NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQIL  105 (333)
T ss_pred             CCcEEEEEEeecccCHHHHHHHHHHHHHHHHC--CCCcccceeEEEE-ECCEEEEEEecCCCCcHHHHHHHcCCCCHHHH
Confidence            45677888887766666677788887777764  5677777665543 35688999999999999999887777888888


Q ss_pred             hHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          101 DNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      ..++.+++.++.|+|+. +++|+    +|||++.++.+||+|||++..... ......||..|+|||++.+..++.++||
T Consensus       106 ~~~~~~l~~~l~~lH~~~~ivH~dlkp~Nili~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  185 (333)
T cd06650         106 GKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDI  185 (333)
T ss_pred             HHHHHHHHHHHHHHHhcCCEEecCCChhhEEEcCCCCEEEeeCCcchhhhhhccccCCCCccccCHHHhcCCCCCcHHHH
Confidence            99999999999999974 68888    999999999999999999965432 2344579999999999999889999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC-ch-hhhhccC-Ccchh-
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD-LR-HIRRLRF-WPMNK-  250 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~-~~~~~-  250 (358)
                      |||||++|+|++|+.||.....       .   .+...++............... ...... .. ..+.... ..... 
T Consensus       186 wslG~il~~l~~g~~p~~~~~~-------~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  254 (333)
T cd06650         186 WSMGLSLVEMAIGRYPIPPPDA-------K---ELELMFGCPVEGDPAESETSPR-PRPPGRPLSSYGPDSRPPMAIFEL  254 (333)
T ss_pred             HHHHHHHHHHHHCCCCCCCcch-------h---HHHHHhcCcccCCccccccCcc-cCCccchhhhhcccccccccHHHH
Confidence            9999999999999999964431       1   1112222111100000000000 000000 00 0000000 00000 


Q ss_pred             ---hHHhh-hcC-ChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 ---VLVEK-YDF-NERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ---~~~~~-~~~-~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         ..... ... ....+.++.+||.+||++||++|||+.|+++||||+..
T Consensus       255 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~~P~~Rpt~~ell~h~~~~~~  305 (333)
T cd06650         255 LDYIVNEPPPKLPSGVFGAEFQDFVNKCLIKNPAERADLKQLMVHAFIKRS  305 (333)
T ss_pred             HHHHhcCCCccCCCCCcCHHHHHHHHHhccCCcccCcCHHHHhhCHHHhcC
Confidence               00000 001 11246789999999999999999999999999999853

Protein kinases (PKs), MAP/ERK kinase (MEK) 1 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 is a dual-specificity PK that phosphorylates and activates the downst

>cd05602 STKc_SGK1 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 1

Probab=100.00  E-value=2.4e-33  Score=257.78  Aligned_cols=225  Identities=15%  Similarity=0.121  Sum_probs=170.3

Q ss_pred             cCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|++.......  ..+++.++.....+. ..|++++....... .....|+||||++||+|.+++.....+.+.
T Consensus        19 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~-~~h~~Iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~   96 (325)
T cd05602          19 EEKFYAVKVLQKKAILKKKEEKHIMSERNVLLKN-VKHPFLVGLHFSFQ-TADKLYFVLDYINGGELFYHLQRERCFLEP   96 (325)
T ss_pred             CCCEEEEEEEEHHHHHhhhHHHHHHHHHHHHHHh-CCCCCCCceeEEEE-cCCeEEEEEeCCCCCcHHHHHHhcCCCCHH
Confidence            45568888886543221  122232332222222 46677777654443 345789999999999999999887778888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|....   ......+||+.|+|||++.+..++.+
T Consensus        97 ~~~~~~~qi~~~L~~lH~~giiHrDlkp~Nili~~~~~~kl~DfG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  176 (325)
T cd05602          97 RARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNGTTSTFCGTPEYLAPEVLHKQPYDRT  176 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEecCCCHHHeEECCCCCEEEccCCCCcccccCCCCcccccCCccccCHHHHcCCCCCCc
Confidence            999999999999999999999999    99999999999999999986532   22345579999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|.+||.+.+      .......+..                                        
T Consensus       177 ~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~----------------------------------------  210 (325)
T cd05602         177 VDWWCLGAVLYEMLYGLPPFYSRN------TAEMYDNILN----------------------------------------  210 (325)
T ss_pred             cccccccHHHHHHhcCCCCCCCCC------HHHHHHHHHh----------------------------------------
Confidence            999999999999999999997543      2222222111                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH----HHhcCcCcCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA----QCLSHPWMSA  295 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~----elL~hpwf~~  295 (358)
                        .....++..+..+.+||.+||+.||.+|+++.    ++++|+||..
T Consensus       211 --~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~i~~~~~~~~  256 (325)
T cd05602         211 --KPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKNHIFFSP  256 (325)
T ss_pred             --CCcCCCCCCCHHHHHHHHHHcccCHHHCCCCCCCHHHHhcCcccCC
Confidence              01122334577899999999999999999876    8999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK1 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK1 is ubiquitously expressed and is under transcriptional control of numerous stimuli including cell stress (cell shrinkage), serum, hormones (gluco- and mineralocorticoids), gonadotropins, growth factors, interleukin-6, and other cytokines. It plays roles in sodium retention and potassium elimination in the kidney, nutrient transport, salt

>cd05603 STKc_SGK2 Catalytic domain of the Protein Serine/Threonine Kinase, Serum- and Glucocorticoid-induced Kinase 2

Probab=100.00  E-value=1.1e-33  Score=259.70  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=170.6

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++........  .+++.++.....+. ..|++++....... .....|+|||||+||+|...+.....+.+
T Consensus        18 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~~l~~-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   95 (321)
T cd05603          18 SDGSFYAVKVLQKKTILKKKEQNHIMAERNVLLKN-LKHPFLVGLHYSFQ-TAEKLYFVLDYVNGGELFFHLQRERCFLE   95 (321)
T ss_pred             CCCCEEEEEEEEHHHHHHhhHHHHHHHHHHHHHHh-CCCCCccceeeEEE-cCCEEEEEEcCCCCCCHHHHHHHcCCCCH
Confidence            3566789998875433222  22333332222222 46777777664433 34578999999999999988877777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++....   ......+||+.|+|||++.+..++.
T Consensus        96 ~~~~~~~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  175 (321)
T cd05603          96 PRARFYAAEVASAIGYLHSLNIIYRDLKPENILLDSQGHVVLTDFGLCKEGVEPEETTSTFCGTPEYLAPEVLRKEPYDR  175 (321)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeEECCCCCEEEccCCCCccCCCCCCccccccCCcccCCHHHhcCCCCCC
Confidence            8999999999999999999999998    99999999999999999986532   2233457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      .......+   ...                                   
T Consensus       176 ~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i---~~~-----------------------------------  211 (321)
T cd05603         176 TVDWWCLGAVLYEMLYGLPPFYSRD------VSQMYDNI---LHK-----------------------------------  211 (321)
T ss_pred             cCcccccchhhhhhhcCCCCCCCCC------HHHHHHHH---hcC-----------------------------------
Confidence            9999999999999999999997543      11111111   111                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf~~  295 (358)
                          ...++...+..+.++|.+||+.||.+|+++    .++++|+||..
T Consensus       212 ----~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~~~~~~  256 (321)
T cd05603         212 ----PLQLPGGKTVAACDLLVGLLHKDQRRRLGAKADFLEIKNHVFFSP  256 (321)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHccCCHhhcCCCCCCHHHHhCCCCcCC
Confidence                112334456788999999999999999975    59999999975

Serine/Threonine Kinases (STKs), Serum- and Glucocorticoid-induced Kinase (SGK) subfamily, SGK2 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. There are three isoforms of SGK, named SGK1, SGK2, and SGK3. SGK2 shows a more restricted distribution that SGK1 and is most abundantly expressed in epithelial tissues including kidney, liver, pancreas, and the choroid plexus of the brain. In vitro cellular assays show that SGK2 can stimulate the activity of ion channels, the glutamate transporter EEAT4, and the glutamate receptors, GluR6 and GLUR1.

>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]

Probab=99.98  E-value=1.1e-33  Score=267.19  Aligned_cols=228  Identities=16%  Similarity=0.211  Sum_probs=200.4

Q ss_pred             CcccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           12 TKTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .|+.|...+.+..||||.|..+.++.|+..|..++-.++|  ++|++|++++.+.+... -..||+|||++|+|..||..
T Consensus       647 ~GrLk~pgkre~~VAIKTLK~GytekqrrdFL~EAsIMGQ--FdHPNIIrLEGVVTks~-PvMIiTEyMENGsLDsFLR~  723 (996)
T KOG0196|consen  647 SGRLKLPGKREITVAIKTLKAGYTEKQRRDFLSEASIMGQ--FDHPNIIRLEGVVTKSK-PVMIITEYMENGSLDSFLRQ  723 (996)
T ss_pred             cccccCCCCcceeEEEeeeccCccHHHHhhhhhhhhhccc--CCCCcEEEEEEEEecCc-eeEEEhhhhhCCcHHHHHhh
Confidence            4788999999999999999999999999999999999999  78999999998887654 46789999999999999985


Q ss_pred             -ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCcc--CCCcchh
Q 045353           92 -SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQ--TRQYRCP  160 (358)
Q Consensus        92 -~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~g--t~~Y~aP  160 (358)
                       .+.+...|+..+++.|.+|+.||-|.+.+||    .|||++.+..+|++|||+++...+.    +++..|  ...|.||
T Consensus       724 ~DGqftviQLVgMLrGIAsGMkYLsdm~YVHRDLAARNILVNsnLvCKVsDFGLSRvledd~~~~ytt~GGKIPiRWTAP  803 (996)
T KOG0196|consen  724 NDGQFTVIQLVGMLRGIASGMKYLSDMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTLGGKIPIRWTAP  803 (996)
T ss_pred             cCCceEeehHHHHHHHHHHHhHHHhhcCchhhhhhhhheeeccceEEEeccccceeecccCCCccccccCCccceeecCh
Confidence             4678889999999999999999999999999    8999999999999999999987543    223333  4579999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |.+....++.++||||+||+|||.++ |..||...+      +++.+..|.+-+..||                      
T Consensus       804 EAIa~RKFTsASDVWSyGIVmWEVmSyGERPYWdmS------NQdVIkaIe~gyRLPp----------------------  855 (996)
T KOG0196|consen  804 EAIAYRKFTSASDVWSYGIVMWEVMSYGERPYWDMS------NQDVIKAIEQGYRLPP----------------------  855 (996)
T ss_pred             hHhhhcccCchhhccccceEEEEecccCCCcccccc------hHHHHHHHHhccCCCC----------------------
Confidence            99999999999999999999999765 999997666      6778887777666554                      


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                         |.+++..+..|+..||++|-..||++.|++.
T Consensus       856 -------------------PmDCP~aL~qLMldCWqkdR~~RP~F~qiV~  886 (996)
T KOG0196|consen  856 -------------------PMDCPAALYQLMLDCWQKDRNRRPKFAQIVS  886 (996)
T ss_pred             -------------------CCCCcHHHHHHHHHHHHHHhhcCCCHHHHHH
Confidence                               3456788999999999999999999999876

>KOG0666 consensus Cyclin C-dependent kinase CDK8 [Transcription]

Probab=99.98  E-value=3.5e-33  Score=239.08  Aligned_cols=243  Identities=23%  Similarity=0.261  Sum_probs=177.3

Q ss_pred             cCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-----cccccChhhhhHHHHhhhhccccccCCCCCCc----cc
Q 045353           54 AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-----DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KN  124 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~N  124 (358)
                      +.|++++.+..+.-.-+...|++.||.+.. |.+.+.     ....+...-.++++.|++.|+.|+|++=++||    .|
T Consensus        84 l~h~nvi~Lv~Vfl~~d~~v~l~fdYAEhD-L~~II~fHr~~~~~~lp~~mvKsilwQil~Gv~YLH~NWvlHRDLKPaN  162 (438)
T KOG0666|consen   84 LKHPNVISLVKVFLSHDKKVWLLFDYAEHD-LWHIIKFHRASKAKQLPRSMVKSILWQILDGVHYLHSNWVLHRDLKPAN  162 (438)
T ss_pred             hcCCcchhHHHHHhccCceEEEEehhhhhh-HHHHHHHhccchhccCCHHHHHHHHHHHHhhhHHHhhhheeeccCCcce
Confidence            456666666666555588999999999864 444443     12245667789999999999999999999999    89


Q ss_pred             ccccCC----CcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCC
Q 045353          125 LLAAVD----VQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDP  193 (358)
Q Consensus       125 ILl~~~----~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~  193 (358)
                      ||+..+    |.|||+|||+|+......      ...+-|.||+|||+++|.. |+.++||||+|||+.||++-.+.|.+
T Consensus       163 IlvmgdgperG~VKIaDlGlaR~~~~plkpl~s~d~VVVTiWYRAPELLLGa~hYT~AiDvWAiGCIfaElLtl~PlF~g  242 (438)
T KOG0666|consen  163 ILVMGDGPERGRVKIADLGLARLFNNPLKPLASLDPVVVTIWYRAPELLLGARHYTKAIDVWAIGCIFAELLTLEPLFKG  242 (438)
T ss_pred             EEEeccCCccCeeEeecccHHHHhhccccccccCCceEEEEEecChHHhcccccccchhhhHHHHHHHHHHHccCccccc
Confidence            999888    999999999998876543      3347799999999999976 99999999999999999999999987


Q ss_pred             CCCCCC---CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHH
Q 045353          194 HSGDNY---DKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFL  270 (358)
Q Consensus       194 ~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li  270 (358)
                      ......   --..+++..|++++|.+....|.......++-.....++   .. ++ ....+..-+.....-++...+|+
T Consensus       243 ~E~k~~~~~Pfq~dQl~rIf~vLG~Pt~~~Wp~lkk~Pe~q~~ls~f~---~~-~~-~n~sL~~~~~~~k~k~~~a~~LL  317 (438)
T KOG0666|consen  243 REEKIKTKNPFQHDQLDRIFEVLGTPTDKDWPDLKKMPEYQTLLSDFR---RH-YY-DNVSLHKYYHKHKVKDPSALDLL  317 (438)
T ss_pred             hhhhcccCCCchHHHHHHHHHHcCCCccccchhhhhCcchHHHHHHhH---Hh-hc-CcchHHHHHHHhcCCCchHHHHH
Confidence            643322   225689999999999998877654433322211111110   00 00 00001111111222244578999


Q ss_pred             HhccccCCCCCCCHHHHhcCcCcCCCCCCCCC
Q 045353          271 VPILDFVPEKRPTAAQCLSHPWMSAGPQLREP  302 (358)
Q Consensus       271 ~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~  302 (358)
                      .+||.+||.+|+|++|+|+|+||+..+.++.|
T Consensus       318 ~klL~yDP~kRIta~qAleh~yF~~d~lpp~p  349 (438)
T KOG0666|consen  318 QKLLTYDPIKRITAEQALEHPYFTEDPLPPLP  349 (438)
T ss_pred             HHHhccCchhhccHHHHhcccccccCCCCCCc
Confidence            99999999999999999999999998766444

>KOG0580 consensus Serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.98  E-value=2.7e-33  Score=231.77  Aligned_cols=226  Identities=17%  Similarity=0.217  Sum_probs=184.2

Q ss_pred             cccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc--cccc
Q 045353           19 TESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN--DSVV   94 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~--~~~~   94 (358)
                      .+++..||.|++...=-...  ..-++|+  .+-|..+.|++|.+++... -.+...|+++||..+|+++..++  ....
T Consensus        44 kks~~IvalKVlfKsqi~~~~v~~qlrRE--iEIqs~L~hpnilrlY~~f-hd~~riyLilEya~~gel~k~L~~~~~~~  120 (281)
T KOG0580|consen   44 KKSLFIVALKVLFKSQILKTQVEHQLRRE--IEIQSHLRHPNILRLYGYF-HDSKRIYLILEYAPRGELYKDLQEGRMKR  120 (281)
T ss_pred             ccCCcEEEEeeeeHHHHHHhcchhhhhhe--eEeecccCCccHHhhhhhe-eccceeEEEEEecCCchHHHHHHhccccc
Confidence            56788999999876432221  2233343  3335556778888876543 34567899999999999999998  6667


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec-CCCCCCCccCCCcchhHHHhCCCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT-HKQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~-~~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +++...+.++.|++.++.|+|..++|||    +|+|++..+.+||+|||-+... .....+.|||.-|.+||+..+..++
T Consensus       121 f~e~~~a~Yi~q~A~Al~y~h~k~VIhRdiKpenlLlg~~~~lkiAdfGwsV~~p~~kR~tlcgt~dyl~pEmv~~~~hd  200 (281)
T KOG0580|consen  121 FDEQRAATYIKQLANALLYCHLKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSNKRKTLCGTLDYLPPEMVEGRGHD  200 (281)
T ss_pred             ccccchhHHHHHHHHHHHHhccCCcccCCCCHHHhccCCCCCeeccCCCceeecCCCCceeeecccccCCHhhcCCCCcc
Confidence            8999999999999999999999999999    9999999999999999999776 4456677999999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ..+|+|++|++.||++.|.+||...+      ..+...                                          
T Consensus       201 ~~Vd~w~lgvl~yeflvg~ppFes~~------~~etYk------------------------------------------  232 (281)
T KOG0580|consen  201 KFVDLWSLGVLCYEFLVGLPPFESQS------HSETYK------------------------------------------  232 (281)
T ss_pred             chhhHHHHHHHHHHHHhcCCchhhhh------hHHHHH------------------------------------------
Confidence            99999999999999999999997544      122222                                          


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ++..-.+.+|..++.++.|||.+||..+|.+|.+..|++.|||+..
T Consensus       233 rI~k~~~~~p~~is~~a~dlI~~ll~~~p~~r~~l~~v~~hpwI~a  278 (281)
T KOG0580|consen  233 RIRKVDLKFPSTISGGAADLISRLLVKNPIERLALTEVMDHPWIVA  278 (281)
T ss_pred             HHHHccccCCcccChhHHHHHHHHhccCccccccHHHHhhhHHHHh
Confidence            2222344567778899999999999999999999999999999874

>cd07867 STKc_CDC2L6 Catalytic domain of Serine/Threonine Kinase, Cell Division Cycle 2-like 6

Probab=99.98  E-value=2e-32  Score=250.61  Aligned_cols=263  Identities=17%  Similarity=0.196  Sum_probs=175.5

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCcccccc---------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQN---------   90 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~---------   90 (358)
                      ++..+|+|.+...-   ....+.++.+....  ..|++++....... ..+...|+||||+.+ +|.+++.         
T Consensus        27 ~~~~~a~k~~~~~~---~~~~~~~E~~~l~~--l~h~niv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~  100 (317)
T cd07867          27 DEKEYALKQIEGTG---ISMSACREIALLRE--LKHPNVIALQKVFLSHSDRKVWLLFDYAEH-DLWHIIKFHRASKANK  100 (317)
T ss_pred             ccceEEEEEecCCC---CcHHHHHHHHHHHh--CCCCCeeeEEEEEeccCCCeEEEEEeeeCC-cHHHHHHhhhccccCC
Confidence            45677888776532   22345556555555  35666666655432 345678999999886 5555442         


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccc----cCCCcEEEEecCCceecCCC------CCCCccCCC
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA----AVDVQCKLVDFGNACWTHKQ------FTNDIQTRQ  156 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl----~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~  156 (358)
                      ....+.+..+..++.|++.|+.++|+.+++|+    +|||+    +.++.+||+|||+|+.....      ....+||+.
T Consensus       101 ~~~~l~~~~~~~i~~qi~~aL~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~t~~  180 (317)
T cd07867         101 KPMQLPRSMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFW  180 (317)
T ss_pred             CCccCCHHHHHHHHHHHHHHHHHHHhCCEEcCCCCHHHEEEccCCCCCCcEEEeeccceeccCCCcccccccCcceeccc
Confidence            12246677888999999999999999999999    99999    55679999999999765432      234578999


Q ss_pred             cchhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC---CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh
Q 045353          157 YRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNY---DKDEDHLALMMELLGMMPRKIALGGRYSRDFFN  232 (358)
Q Consensus       157 Y~aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  232 (358)
                      |+|||++.+. .++.++||||+||++|+|++|.+||........   .....++..+...+|.+....+........+..
T Consensus       181 y~aPE~~~~~~~~~~~~DiwSlG~il~el~tg~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (317)
T cd07867         181 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPFHHDQLDRIFSVMGFPADKDWEDIRKMPEYPT  260 (317)
T ss_pred             ccCcHHhcCCCccCcHHHHHhHHHHHHHHHhCCCCcccccccccccccccHHHHHHHHHhcCCCChhhhhhhhhcccchh
Confidence            9999999875 489999999999999999999999975543211   123456777888888766555433221111110


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      .......    ...................+..+.+||.+||+.||.+|||+.|+|+||||
T Consensus       261 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~dP~~R~t~~e~l~hp~f  317 (317)
T cd07867         261 LQKDFRR----TTYANSSLIKYMEKHKVKPDSKVFLLLQKLLTMDPTKRITSEQALQDPYF  317 (317)
T ss_pred             hhhhhcc----cccCCchhhhhhhcccCCCChHHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            0000000    00000000000011122235678899999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 6 (CDC2L6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L6 is also called CDK8-like and was previously referred to as CDK11. However, this is a confusing nomenclature as CDC2L6 is distinct from CDC2L1, which is represented by the two protein products from its gene, called CDK11(p110) and CDK11(p58), as well as

>cd07850 STKc_JNK Catalytic domain of the Serine/Threonine Kinase, c-Jun N-terminal Kinase

Probab=99.98  E-value=6.4e-32  Score=251.17  Aligned_cols=265  Identities=20%  Similarity=0.260  Sum_probs=183.9

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..+|+|.+...... ...+++.++.+....  ..+.+++........     .....|+||||+.+ +|.+.+... 
T Consensus        39 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~-  114 (353)
T cd07850          39 VTGQNVAIKKLSRPFQNVTHAKRAYRELVLMKL--VNHKNIIGLLNVFTPQKSLEEFQDVYLVMELMDA-NLCQVIQMD-  114 (353)
T ss_pred             CCCCEEEEEecCccccChhHHHHHHHHHHHHHh--cCCCCCcceeeeeccCCCccccCcEEEEEeccCC-CHHHHHhhc-
Confidence            36778899988765433 334455566555444  356666665543221     22457999999976 666665443 


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                       ++..++..++.|++.++.++|+.+++|+    +|||++.++.+||+|||++......  .....+|+.|+|||++.+..
T Consensus       115 -l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (353)
T cd07850         115 -LDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  193 (353)
T ss_pred             -CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCccceeCCCCCCCCCCcccccccCHHHHhCCC
Confidence             7788889999999999999999999999    9999999999999999999775543  23456889999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc-cCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR-HGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|+.||...+      .......+...++.++..+..........+.. .............
T Consensus       194 ~~~~~DvwslG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (353)
T cd07850         194 YKENVDIWSVGCIMGEMIRGTVLFPGTD------HIDQWNKIIEQLGTPSDEFMSRLQPTVRNYVENRPKYAGYSFEELF  267 (353)
T ss_pred             CCCchhhHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhhhhhhHHhhcCCCCCCcchhhhC
Confidence            9999999999999999999999997554      45667778888888877654432222111111 0000000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      +...........+...+..+.+||.+||++||++|||+.|+|+||||+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eiL~~~~~~~  316 (353)
T cd07850         268 PDVLFPPDSESHNKLKASQARDLLSKMLVIDPEKRISVDDALQHPYINV  316 (353)
T ss_pred             cccccCcccccccccchhHHHHHHHHHcCCChhhCcCHHHHhcChhHhh
Confidence            0000000000112234677899999999999999999999999999974

Serine/Threonine Kinases (STKs), c-Jun N-terminal kinase (JNK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The JNK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. JNKs are mitogen-activated protein kinases (MAPKs) that are involved in many stress-activated responses including those during inflammation, neurodegeneration, apoptosis, and persistent pain sensitization, among others. They are also essential regulators of physiological and pathological processes and are involved in the pathogenesis of several diseases such as diabetes, atherosclerosis, stroke, Parkinson's and Alzheimer's. Vetebrates harbor three different JNK

>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=4.7e-33  Score=257.66  Aligned_cols=208  Identities=20%  Similarity=0.245  Sum_probs=163.4

Q ss_pred             hhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChhhhhHHHHhhhhccccccCCCCC
Q 045353           42 VKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNESSRDNEVKNTSQGVKGHRRPSRA  120 (358)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~  120 (358)
                      +--+....+. | .|++++.++...- -++.+||+.|||.||-....+. -...+.+.+|..++++++.++.|+|+.+||
T Consensus        76 ylVEIeILa~-C-dHP~ivkLl~ayy-~enkLwiliEFC~GGAVDaimlEL~r~LtE~QIqvvc~q~ldALn~LHs~~iI  152 (1187)
T KOG0579|consen   76 YLVEIEILAE-C-DHPVIVKLLSAYY-FENKLWILIEFCGGGAVDAIMLELGRVLTEDQIQVVCYQVLDALNWLHSQNII  152 (1187)
T ss_pred             hhhhhhhhhc-C-CChHHHHHHHHHh-ccCceEEEEeecCCchHhHHHHHhccccchHHHHHHHHHHHHHHHHHhhcchh
Confidence            3333344433 4 4666666655443 3578999999999999887554 455789999999999999999999999999


Q ss_pred             Cc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhC-----CCCCcchhhhhhhHHHHhhhcCC
Q 045353          121 TR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLG-----SKYSTSADLWSFACICFELATGD  188 (358)
Q Consensus       121 hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~-----~~~~~~~DiwSlGvil~ell~g~  188 (358)
                      ||    .|||++-+|.++|+|||.+....   +...+.+|||+|||||++..     .+|++++||||||++|.+|..+.
T Consensus       153 HRDLKAGNiL~TldGdirLADFGVSAKn~~t~qkRDsFIGTPYWMAPEVvmCET~KD~PYDykaDiWSlGITLIEMAqiE  232 (1187)
T KOG0579|consen  153 HRDLKAGNILLTLDGDIRLADFGVSAKNKSTRQKRDSFIGTPYWMAPEVVMCETFKDQPYDYKADIWSLGITLIEMAQIE  232 (1187)
T ss_pred             hhhccccceEEEecCcEeeecccccccchhHHhhhccccCCcccccchheeeccccCCCchhhhhHHhhhhHHHHHhccC
Confidence            99    89999999999999999985432   34567799999999999763     57999999999999999999999


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      +|-..         ...+..+..+-..-|+-.                                    -.|...+..|.|
T Consensus       233 PPHhe---------lnpMRVllKiaKSePPTL------------------------------------lqPS~Ws~~F~D  267 (1187)
T KOG0579|consen  233 PPHHE---------LNPMRVLLKIAKSEPPTL------------------------------------LQPSHWSRSFSD  267 (1187)
T ss_pred             CCccc---------cchHHHHHHHhhcCCCcc------------------------------------cCcchhhhHHHH
Confidence            99863         334444444443333322                                    123334678999


Q ss_pred             HHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          269 FLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       269 li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      |+.+||..||..||++.|+|+||||+..+
T Consensus       268 fLk~cL~Knp~~Rp~aaqll~Hpfv~~~~  296 (1187)
T KOG0579|consen  268 FLKRCLVKNPRNRPPAAQLLKHPFVQNAP  296 (1187)
T ss_pred             HHHHHHhcCCccCCCHHHHhhCcccccCC
Confidence            99999999999999999999999999643

>cd07873 STKc_PCTAIRE1 Catalytic domain of the Serine/Threonine Kinase, PCTAIRE-1 kinase

Probab=99.98  E-value=1.4e-32  Score=249.91  Aligned_cols=254  Identities=21%  Similarity=0.267  Sum_probs=184.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .++..+|+|.+...........+.++......  +.+++++....... .....|+||||+.+ +|.+++.. ...+.+.
T Consensus        29 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~nI~~~~~~~~-~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~  104 (301)
T cd07873          29 LTDNLVALKEIRLEHEEGAPCTAIREVSLLKD--LKHANIVTLHDIIH-TEKSLTLVFEYLDK-DLKQYLDDCGNSINMH  104 (301)
T ss_pred             CCCcEEEEEEEecccccCchhHHHHHHHHHHh--cCCCCcceEEEEEe-cCCeEEEEEecccc-CHHHHHHhcCCCCCHH
Confidence            35678899988765555555566666665555  35677777666544 34578999999985 77776654 3456788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCC-CCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSK-YST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~-~~~  170 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   ......+++.|+|||++.+.. ++.
T Consensus       105 ~~~~~~~qi~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  184 (301)
T cd07873         105 NVKLFLFQLLRGLNYCHRRKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYSNEVVTLWYRPPDILLGSTDYST  184 (301)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeCCCCCHHHEEECCCCcEEECcCcchhccCCCCCcccccceeecccCcHHHhCCCCCcc
Confidence            899999999999999999999999    999999999999999999965432   223446789999999998754 789


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|++||.+.+      ..+.+..+...++.++...+........+ .......       .    
T Consensus       185 ~~Dv~slG~~l~el~tg~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-------~----  246 (301)
T cd07873         185 QIDMWGVGCIFYEMSTGRPLFPGST------VEEQLHFIFRILGTPTEETWPGILSNEEF-KSYNYPK-------Y----  246 (301)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCChhhchhhhccccc-cccccCc-------c----
Confidence            9999999999999999999997654      45677778888887766554322111111 0000000       0    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ............++.+.+||.+||++||.+|||++|+|+||||..
T Consensus       247 ~~~~~~~~~~~~~~~~~~li~~ml~~dp~~R~t~~eil~h~~f~~  291 (301)
T cd07873         247 RADCLHNHAPRLDSDGAELLSKLLQFEGRKRISAEEAMKHPYFHC  291 (301)
T ss_pred             ccccHHhhcCCCCHHHHHHHHHHhcCCcccCcCHHHHhcCccccc
Confidence            000000122345678899999999999999999999999999975

Serine/Threonine Kinases (STKs), PCTAIRE-1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PCTAIRE-1 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PCTAIRE-1 is expressed ubiquitously and is localized in the cytoplasm. Its kinase activity is cell cycle dependent and peaks at the S and G2 phases. PCTAIRE-1 is highly expressed in the brain and may pl

>cd05605 STKc_GRK4_like Catalytic domain of G protein-coupled Receptor Kinase 4-like Protein Serine/Threonine Kinases

Probab=99.98  E-value=1.4e-32  Score=247.97  Aligned_cols=230  Identities=16%  Similarity=0.189  Sum_probs=172.7

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      .+|..+|+|.+........  ...+.+++.....  +.+++++......... ..+|+||||+.||+|.+++...  ..+
T Consensus        23 ~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~-~~~~lv~e~~~~~~L~~~~~~~~~~~~   99 (285)
T cd05605          23 ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK--VNSRFVVSLAYAYETK-DALCLVLTLMNGGDLKFHIYNMGNPGF   99 (285)
T ss_pred             CCCceEEEEEEehhhhhhhhhHHHHHHHHHHHHh--cCCCCEeeeeeeecCC-CeEEEEEeccCCCcHHHHHHhcCcCCC
Confidence            3577899998876443322  2334455554444  3567777766554433 4789999999999999877532  347


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..+..++.+++.++.|+|+.+++|+    +|||+++++.++|+|||++.....  .....+|++.|+|||++.+..++
T Consensus       100 ~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (285)
T cd05605         100 DEERAVFYAAEITCGLEDLHRERIVYRDLKPENILLDDYGHIRISDLGLAVEIPEGETIRGRVGTVGYMAPEVVKNERYT  179 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCcEecCCCHHHEEECCCCCEEEeeCCCceecCCCCccccccCCCCccCcHHhcCCCCC
Confidence            788899999999999999999999999    999999999999999999976532  23345899999999999988899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||.+...      ......+......                                  
T Consensus       180 ~~~Diws~G~~l~el~~g~~pf~~~~~------~~~~~~~~~~~~~----------------------------------  219 (285)
T cd05605         180 FSPDWWGLGCLIYEMIEGKSPFRQRKE------KVKREEVERRVKE----------------------------------  219 (285)
T ss_pred             ccccchhHHHHHHHHHHCCCCCCCCch------hhHHHHHHHHhhh----------------------------------
Confidence            999999999999999999999975431      1111111111100                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                          ....++...+..+.+||.+||..||++||     +++++++||||...
T Consensus       220 ----~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05605         220 ----DQEEYSEKFSEAARSICRQLLTKDPGFRLGCRGEGAEEVKAHPFFRTA  267 (285)
T ss_pred             ----cccccCcccCHHHHHHHHHHccCCHHHhcCCCCCCHHHHhcCcCccCC
Confidence                01122334567889999999999999999     99999999999863

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK4-like group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. Members of the GRK4-like group include GRK4, GRK5,

>PHA02988 hypothetical protein; Provisional

Probab=99.98  E-value=2e-32  Score=246.80  Aligned_cols=221  Identities=10%  Similarity=0.086  Sum_probs=171.0

Q ss_pred             cCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCC---CCCCCCcccccCCCCCccccccccccc
Q 045353           21 SSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKP---SSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      +|..||+|.+.......+  .+.+.++.....+  +.|++++........   ....+++|||||+||+|.+++.....+
T Consensus        42 ~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~nIv~~~g~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~~~~  119 (283)
T PHA02988         42 NNKEVIIRTFKKFHKGHKVLIDITENEIKNLRR--IDSNNILKIYGFIIDIVDDLPRLSLILEYCTRGYLREVLDKEKDL  119 (283)
T ss_pred             CCEEEEEEeccccccccHHHHHHHHHHHHHHHh--cCCCCEEEEeeeEEecccCCCceEEEEEeCCCCcHHHHHhhCCCC
Confidence            677899999876543332  2455566666666  356677777754322   235678999999999999999887778


Q ss_pred             ChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC--CCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG--SKY  168 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~--~~~  168 (358)
                      ++.....++.+++.|+.++|+ .+++||    +|||++.++.+||+|||++..........+||..|+|||++.+  ..|
T Consensus       120 ~~~~~~~i~~~i~~~l~~lH~~~~~~Hrdlkp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  199 (283)
T PHA02988        120 SFKTKLDMAIDCCKGLYNLYKYTNKPYKNLTSVSFLVTENYKLKIICHGLEKILSSPPFKNVNFMVYFSYKMLNDIFSEY  199 (283)
T ss_pred             ChhHHHHHHHHHHHHHHHHHhcCCCCCCcCChhhEEECCCCcEEEcccchHhhhccccccccCcccccCHHHhhhccccc
Confidence            888889999999999999998 488898    9999999999999999999876555556689999999999987  579


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+.+      ..+....+... +.                                 
T Consensus       200 ~~k~Di~SlGvil~el~~g~~Pf~~~~------~~~~~~~i~~~-~~---------------------------------  239 (283)
T PHA02988        200 TIKDDIYSLGVVLWEIFTGKIPFENLT------TKEIYDLIINK-NN---------------------------------  239 (283)
T ss_pred             cchhhhhHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhc-CC---------------------------------
Confidence            999999999999999999999997443      12222211110 00                                 


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+||.+||+.||++|||++|+++
T Consensus       240 ------~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ell~  274 (283)
T PHA02988        240 ------SLKLPLDCPLEIKCIVEACTSHDSIKRPNIKEILY  274 (283)
T ss_pred             ------CCCCCCcCcHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                  11122345678999999999999999999999985

>PHA03207 serine/threonine kinase US3; Provisional

Probab=99.98  E-value=1.8e-32  Score=258.21  Aligned_cols=255  Identities=16%  Similarity=0.150  Sum_probs=179.7

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      +..|++|.+...      +...++.+...+  +.|++++.+..... .....|+||||+. ++|.+++.....+.+..+.
T Consensus       119 ~~~v~vK~~~~~------~~~~~E~~il~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~-~~l~~~l~~~~~l~~~~~~  188 (392)
T PHA03207        119 RKKVIVKAVTGG------KTPGREIDILKT--ISHRAIINLIHAYR-WKSTVCMVMPKYK-CDLFTYVDRSGPLPLEQAI  188 (392)
T ss_pred             ceeEEEEecccc------ccHHHHHHHHHh--cCCCCccceeeeEe-eCCEEEEEehhcC-CCHHHHHHhcCCCCHHHHH
Confidence            345677766542      223455555554  35677777665443 3456899999997 5777777666778899999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcch
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      .++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|......     ....+||+.|+|||++.+..|+.++
T Consensus       189 ~i~~ql~~aL~~LH~~givHrDlkp~Nill~~~~~~~l~DfG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  268 (392)
T PHA03207        189 TIQRRLLEALAYLHGRGIIHRDVKTENIFLDEPENAVLGDFGAACKLDAHPDTPQCYGWSGTLETNSPELLALDPYCAKT  268 (392)
T ss_pred             HHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEccCccccccCcccccccccccccccCccCHhHhcCCCCCchh
Confidence            999999999999999999999    8999999999999999999654432     2245799999999999998999999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|+.||.+.....   ....+..+.+.++..|.........  .+......+.......+ ...   
T Consensus       269 DvwslGvil~el~~g~~pf~~~~~~~---~~~~l~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~---  339 (392)
T PHA03207        269 DIWSAGLVLFEMSVKNVTLFGKQVKS---SSSQLRSIIRCMQVHPLEFPQNGST--NLCKHFKQYAIVLRPPY-TIP---  339 (392)
T ss_pred             hHHHHHHHHHHHHHCCCCCCCCCCCC---cHHHHHHHHHHhccCccccCCccch--hHHHHHHhhcccccCCc-ccc---
Confidence            99999999999999999997654332   4667777888777665433211110  00000000000000000 000   


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        ........+.++.+||.+||.+||++|||+.|+|+||||...+
T Consensus       340 --~~~~~~~~~~~~~~li~~ml~~dp~~Rpsa~e~l~~p~f~~~~  382 (392)
T PHA03207        340 --PVIRKYGMHMDVEYLIAKMLTFDQEFRPSAQDILSLPLFTKEP  382 (392)
T ss_pred             --chhhccCcchhHHHHHHHHhccChhhCCCHHHHhhCchhhccc
Confidence              0000112356788999999999999999999999999998754

>PTZ00283 serine/threonine protein kinase; Provisional

Probab=99.98  E-value=2e-32  Score=264.32  Aligned_cols=228  Identities=17%  Similarity=0.149  Sum_probs=171.0

Q ss_pred             cccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-------CCCCCcccccCCCCCcccccc
Q 045353           19 TESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-------SPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      ..+|..+|+|.+... .++....++.++......  ..+.+++.........       ...+++||||++||+|.+++.
T Consensus        54 ~~~g~~vAvK~i~~~~~~~~~~~~~~~Ei~~l~~--~~h~~iv~~~~~~~~~~~~~~~~~~~i~lV~Ey~~~gsL~~~l~  131 (496)
T PTZ00283         54 VSDGEPFAVKVVDMEGMSEADKNRAQAEVCCLLN--CDFFSIVKCHEDFAKKDPRNPENVLMIALVLDYANAGDLRQEIK  131 (496)
T ss_pred             cCCCCEEEEEEEecccCCHHHHHHHHHHHHHHhc--CCCCcEEEeecceecccccCcccceEEEEEEeCCCCCcHHHHHH
Confidence            346788999988654 344455555555544443  3455555443332211       124689999999999999875


Q ss_pred             c----ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           91 D----SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        91 ~----~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                      .    ...+.+..+..++.|++.++.|+|+.+++||    +|||++.++.+||+|||+++.....     ....+||+.|
T Consensus       132 ~~~~~~~~l~e~~~~~i~~qll~aL~~lH~~~IiHrDLKP~NILl~~~~~vkL~DFGls~~~~~~~~~~~~~~~~Gt~~Y  211 (496)
T PTZ00283        132 SRAKTNRTFREHEAGLLFIQVLLAVHHVHSKHMIHRDIKSANILLCSNGLVKLGDFGFSKMYAATVSDDVGRTFCGTPYY  211 (496)
T ss_pred             HhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEeCCCCEEEEecccCeeccccccccccccccCCcce
Confidence            3    2357788899999999999999999999999    8999999999999999999764322     3345799999


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      +|||++.+..|+.++|||||||++|+|++|+.||.+.+      ....+..+.  .+.                      
T Consensus       212 ~aPE~~~~~~~s~k~DVwSlGvilyeLltG~~Pf~~~~------~~~~~~~~~--~~~----------------------  261 (496)
T PTZ00283        212 VAPEIWRRKPYSKKADMFSLGVLLYELLTLKRPFDGEN------MEEVMHKTL--AGR----------------------  261 (496)
T ss_pred             eCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHh--cCC----------------------
Confidence            99999999899999999999999999999999996543      111111111  000                      


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                       ....+...++.+.+|+.+||+.||.+|||+.++++|||+..
T Consensus       262 -----------------~~~~~~~~~~~l~~li~~~L~~dP~~RPs~~ell~~p~~~~  302 (496)
T PTZ00283        262 -----------------YDPLPPSISPEMQEIVTALLSSDPKRRPSSSKLLNMPICKL  302 (496)
T ss_pred             -----------------CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHhCHHHHH
Confidence                             00123445778999999999999999999999999999875

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.98  E-value=3.3e-33  Score=247.40  Aligned_cols=223  Identities=17%  Similarity=0.172  Sum_probs=174.7

Q ss_pred             cccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHH
Q 045353           25 KENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNE  103 (358)
Q Consensus        25 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~  103 (358)
                      -|+|+|..+.. ++.-..-.-..|+...+....+.++.+..-..+. ..+|.||||++||+|-..+..-+.+.+..+..+
T Consensus       377 yAiKiLkKDViiQdDDvectm~EKrvLAL~~kppFL~qlHScFQTm-DRLyFVMEyvnGGDLMyhiQQ~GkFKEp~AvFY  455 (683)
T KOG0696|consen  377 YAIKILKKDVIIQDDDVECTMVEKRVLALPGKPPFLVQLHSCFQTM-DRLYFVMEYVNGGDLMYHIQQVGKFKEPVAVFY  455 (683)
T ss_pred             hhhhhhccceeeecCcccceehhhhheecCCCCchHHHHHHHhhhh-hheeeEEEEecCchhhhHHHHhcccCCchhhhh
Confidence            46777766543 2222222222233333333333555555444443 568889999999999999998889999999999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCcee---cCCCCCCCccCCCcchhHHHhCCCCCcchhhhh
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWS  176 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~---~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwS  176 (358)
                      ...++.|+-++|..|||-|    +|||++.+|++||+|||+++.   .+....+.||||-|+|||++...+|+.++|+||
T Consensus       456 AaEiaigLFFLh~kgIiYRDLKLDNvmLd~eGHiKi~DFGmcKEni~~~~TTkTFCGTPdYiAPEIi~YqPYgksvDWWa  535 (683)
T KOG0696|consen  456 AAEIAIGLFFLHSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIFDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA  535 (683)
T ss_pred             hHHHHHHhhhhhcCCeeeeeccccceEeccCCceEeeecccccccccCCcceeeecCCCcccccceEEecccccchhHHH
Confidence            9999999999999999988    999999999999999999964   233455679999999999999999999999999


Q ss_pred             hhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhh
Q 045353          177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY  256 (358)
Q Consensus       177 lGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (358)
                      +||+||||+.|++||++.+      +.+....|++.                                          ..
T Consensus       536 ~GVLLyEmlaGQpPFdGeD------E~elF~aI~eh------------------------------------------nv  567 (683)
T KOG0696|consen  536 FGVLLYEMLAGQPPFDGED------EDELFQAIMEH------------------------------------------NV  567 (683)
T ss_pred             HHHHHHHHHcCCCCCCCCC------HHHHHHHHHHc------------------------------------------cC
Confidence            9999999999999998876      44444444432                                          33


Q ss_pred             cCChhhHHHHHHHHHhccccCCCCCCCH-----HHHhcCcCcCCC
Q 045353          257 DFNERDAKDMADFLVPILDFVPEKRPTA-----AQCLSHPWMSAG  296 (358)
Q Consensus       257 ~~~~~~~~~~~~li~~~L~~dP~~R~ta-----~elL~hpwf~~~  296 (358)
                      .+|..+|.++.+++...|...|.+|..+     .++-.||||+.-
T Consensus       568 syPKslSkEAv~ickg~ltK~P~kRLGcg~~ge~di~~H~FFR~i  612 (683)
T KOG0696|consen  568 SYPKSLSKEAVAICKGLLTKHPGKRLGCGPEGERDIREHPFFRRI  612 (683)
T ss_pred             cCcccccHHHHHHHHHHhhcCCccccCCCCccccchhhCcchhhc
Confidence            5667778999999999999999999854     578899999864

>cd07839 STKc_CDK5 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 5

Probab=99.97  E-value=3.7e-32  Score=244.95  Aligned_cols=252  Identities=21%  Similarity=0.217  Sum_probs=177.9

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      .+|..+++|.+..... +.....+.++.+...+  +.+++++...+... .....|+||||+++ +|.+++. ....+++
T Consensus        23 ~~g~~~~~k~~~~~~~~~~~~~~~~~ei~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~   98 (284)
T cd07839          23 ETHEIVALKRVRLDDDDEGVPSSALREICLLKE--LKHKNIVRLYDVLH-SDKKLTLVFEYCDQ-DLKKYFDSCNGDIDP   98 (284)
T ss_pred             CCCcEEEEEEeecccccccCccchhHHHHHHHh--cCCCCeeeHHHHhc-cCCceEEEEecCCC-CHHHHHHhcCCCCCH
Confidence            4677888888765432 2233455556555544  35666666555443 34578999999986 5655554 3556889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-CC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-YS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~~  169 (358)
                      ..+..++.|++.++.++|..+++|+    +||+++.++.+||+|||++......   .....+++.|+|||++.+.. ++
T Consensus        99 ~~~~~~~~qi~~al~~LH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  178 (284)
T cd07839          99 EIVKSFMFQLLKGLAFCHSHNVLHRDLKPQNLLINKNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYS  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEcCCCcEEECccchhhccCCCCCCcCCCccccCCcChHHHhCCcccC
Confidence            9999999999999999999999999    9999999999999999999765422   33456789999999998755 79


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||....     .....+..+.+.++.++...+........+ ....         ..+..
T Consensus       179 ~~~DiwslG~il~~l~tg~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~~~~  243 (284)
T cd07839         179 TSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEESWPGVSKLPDY-KPYP---------MYPAT  243 (284)
T ss_pred             cHHHHHHHHHHHHHHHhcCCCCcCCC-----CHHHHHHHHHHHhCCCChHHhHHhhhcccc-cccC---------CCCCc
Confidence            99999999999999999988764322     145667777777777665443221110000 0000         00000


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..   .....+..+.++.+||.+||+.||.+|||+++++.||||
T Consensus       244 ~~---~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~il~h~~f  284 (284)
T cd07839         244 TS---LVNVVPKLNSTGRDLLQNLLVCNPVQRISAEEALQHPYF  284 (284)
T ss_pred             ch---hhhhcccCCHHHHHHHHHHhcCChhhcCCHHHHhcCCCC
Confidence            00   001123457789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 5 (CDK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK5 is unusual in that it is regulated by non-cyclin proteins, p35 and p39. It is highly expressed in the nervous system and is critical in normal neural development and function. It plays a role in neuronal migration and differentiation, and is also

>cd05622 STKc_ROCK1 Catalytic domain of the Protein Serine/Threonine Kinase, Rho-associated coiled-coil containing protein kinase 1

Probab=99.97  E-value=2.8e-32  Score=254.96  Aligned_cols=229  Identities=16%  Similarity=0.136  Sum_probs=166.0

Q ss_pred             cCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+|+|++...-  .......+.++.+....  ..+++++....... .....|+|||||+||+|.+++... .+++.
T Consensus        67 ~~~~~aiK~i~~~~~~~~~~~~~~~~e~~i~~~--~~hp~iv~~~~~~~-~~~~~~lv~Ey~~gg~L~~~~~~~-~~~~~  142 (371)
T cd05622          67 TRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF--ANSPWVVQLFYAFQ-DDRYLYMVMEYMPGGDLVNLMSNY-DVPEK  142 (371)
T ss_pred             CCcEEEEEEEEHHHhhhhHHHHHHHHHHHHHHh--CCCCCCCeEEEEEE-cCCEEEEEEcCCCCCcHHHHHHhc-CCCHH
Confidence            45677888876422  22223334444444333  46677777665443 346789999999999999988654 46788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC---
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK---  167 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~---  167 (358)
                      .+..++.+++.++.++|+.+++||    +|||++.++.+||+|||+|......    ....+||+.|+|||++.+..   
T Consensus       143 ~~~~~~~qi~~aL~~LH~~~ivHrDLkp~NIll~~~~~ikL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~l~~~~~~~  222 (371)
T cd05622         143 WARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGDG  222 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEECCCCCEEEEeCCceeEcCcCCcccccCcccCccccCHHHHhccCCCc
Confidence            888999999999999999999999    9999999999999999999765422    23557999999999998643   


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++|||||||++|+|++|.+||.+.+      .......+.......                              
T Consensus       223 ~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~------------------------------  266 (371)
T cd05622         223 YYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHKNSL------------------------------  266 (371)
T ss_pred             cCCCccceeehhHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCcc------------------------------
Confidence             7899999999999999999999997543      122222221100000                              


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~~  297 (358)
                              .+......+..+.+||.+||..++.+  |++++++++||||....
T Consensus       267 --------~~~~~~~~s~~~~~li~~~L~~~~~r~~r~~~~ei~~h~~~~~~~  311 (371)
T cd05622         267 --------TFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKNDQ  311 (371)
T ss_pred             --------cCCCcCCCCHHHHHHHHHHcCChhhhcCCCCHHHHhcCcccCCCC
Confidence                    01112235778999999999844433  78999999999998743

Serine/Threonine Kinases (STKs), ROCK subfamily, ROCK1 (or ROK-beta) isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ROCK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. ROCK contains an N-terminal extension, a catalytic kinase domain, and a C-terminal extension, which contains a coiled-coil region encompassing a Rho-binding domain (RBD) and a pleckstrin homology (PH) domain. ROCK is auto-inhibited by the RBD and PH domain interacting with the catalytic domain, and is activated via interaction with Rho GTPases. ROCK1 is preferentially expressed in the liver, lung, spleen, testes, an

>KOG1989 consensus ARK protein kinase family [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-32  Score=263.50  Aligned_cols=214  Identities=20%  Similarity=0.256  Sum_probs=171.3

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccC-CCCCC-----CCCCCcccccCCCCCcccccc--cccc
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEA-DSKPS-----SPDNFSVDTIPNGVSVEERQN--DSVV   94 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~iv~e~~~gg~L~~~~~--~~~~   94 (358)
                      ..+|.|.+-.. .+..-..+++|...+..+. +|.+||...+ .....     .-+.+|+||||.||+|-|+++  ....
T Consensus        63 ~~~AlKrm~~~-de~~L~~v~~EI~~MK~L~-gh~nIV~yidss~~~~~~~~~~~EvllLmEyC~gg~Lvd~mn~Rlq~~  140 (738)
T KOG1989|consen   63 KKYALKRMYVN-DEEALNAVKREIDIMKLLS-GHKNIVSYIDSSAINRSSNNGVWEVLLLMEYCKGGSLVDFMNTRLQTR  140 (738)
T ss_pred             ceeeeeeeecC-CHHHHHHHHHHHHHHHHhc-CCCceeeEeccccccccCCCceeEEEeehhhccCCcHHHHHHHHHhcc
Confidence            67788888877 7777888889988888764 7887777776 22221     235679999999999999998  3456


Q ss_pred             cChhhhhHHHHhhhhccccccCCC--CCCc----ccccccCCCcEEEEecCCceecCCCCC------------CCccCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQFT------------NDIQTRQ  156 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~------------~~~gt~~  156 (358)
                      +.+.++..|+.++++|+.++|..+  +|||    |||||+.+|+.||||||.|.......+            ....|+.
T Consensus       141 lte~eVLkIf~dv~~AVa~mH~~~pPiIHRDLKiENvLls~~g~~KLCDFGSatt~~~~~~~~~e~~~ve~eI~k~TTp~  220 (738)
T KOG1989|consen  141 LTEDEVLKIFYDVCEAVAAMHYLKPPIIHRDLKIENVLLSADGNYKLCDFGSATTKILSPTSAQEVNYVEEEIEKYTTPQ  220 (738)
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCccchhhhhhhheEEcCCCCEEeCcccccccccCCCccHHHHHHHHHHHHhhCCcc
Confidence            899999999999999999999887  8999    999999999999999999954322111            1245899


Q ss_pred             cchhHHHh---CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          157 YRCPEVLL---GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       157 Y~aPE~l~---~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      |+|||++.   +.+.+.++|||+|||+||.|+....||...+.                                     
T Consensus       221 YRsPEMIDlysg~pI~eKsDIWALGclLYkLCy~t~PFe~sg~-------------------------------------  263 (738)
T KOG1989|consen  221 YRSPEMIDLYSGLPIGEKSDIWALGCLLYKLCYFTTPFEESGK-------------------------------------  263 (738)
T ss_pred             ccChHHHhhhcCCCCcchhHHHHHHHHHHHHHHhCCCcCcCcc-------------------------------------
Confidence            99999975   56789999999999999999999999975431                                     


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCC--hhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFN--ERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                     ..++...|.+|  +..+..+.+||+.||+.||.+||++-|++.+
T Consensus       264 ---------------laIlng~Y~~P~~p~ys~~l~~LI~~mL~~nP~~RPnI~Qv~~~  307 (738)
T KOG1989|consen  264 ---------------LAILNGNYSFPPFPNYSDRLKDLIRTMLQPNPDERPNIYQVLEE  307 (738)
T ss_pred             ---------------eeEEeccccCCCCccHHHHHHHHHHHHhccCcccCCCHHHHHHH
Confidence                           11222234444  3568999999999999999999999998764

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2.2e-32  Score=254.86  Aligned_cols=191  Identities=21%  Similarity=0.285  Sum_probs=158.0

Q ss_pred             cCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccc-c
Q 045353           54 AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA-A  128 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl-~  128 (358)
                      .++++++.+..... .....|+|||++.||.+.+.+....... .++..++.+++.++.|+|++|++||    +|||+ +
T Consensus       373 ~~h~niv~~~~v~~-~~~~~~~v~e~l~g~ell~ri~~~~~~~-~e~~~w~~~lv~Av~~LH~~gvvhRDLkp~NIL~~~  450 (612)
T KOG0603|consen  373 RDHPNIVKSHDVYE-DGKEIYLVMELLDGGELLRRIRSKPEFC-SEASQWAAELVSAVDYLHEQGVVHRDLKPGNILLDG  450 (612)
T ss_pred             cCCCcceeecceec-CCceeeeeehhccccHHHHHHHhcchhH-HHHHHHHHHHHHHHHHHHhcCeeecCCChhheeecC
Confidence            44555555544433 4568899999999999999998776666 7888899999999999999999998    99999 6


Q ss_pred             CCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHH
Q 045353          129 VDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLAL  208 (358)
Q Consensus       129 ~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~  208 (358)
                      +.++++|+|||.++.......+.|-|..|.|||++....|+.++||||||++||+||+|+.||....+.         ..
T Consensus       451 ~~g~lrltyFG~a~~~~~~~~tp~~t~~y~APEvl~~~~yt~acD~WSLGvlLy~ML~G~tp~~~~P~~---------~e  521 (612)
T KOG0603|consen  451 SAGHLRLTYFGFWSELERSCDTPALTLQYVAPEVLAIQEYTEACDWWSLGVLLYEMLTGRTLFAAHPAG---------IE  521 (612)
T ss_pred             CCCcEEEEEechhhhCchhhcccchhhcccChhhhccCCCCcchhhHHHHHHHHHHHhCCCccccCCch---------HH
Confidence            899999999999988877666778899999999999889999999999999999999999999766532         11


Q ss_pred             HHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          209 MMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       209 i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                      +...++.+                                        .+...+|..+++||.+||++||.+|+|+++++
T Consensus       522 i~~~i~~~----------------------------------------~~s~~vS~~AKdLl~~LL~~dP~~Rl~~~~i~  561 (612)
T KOG0603|consen  522 IHTRIQMP----------------------------------------KFSECVSDEAKDLLQQLLQVDPALRLGADEIG  561 (612)
T ss_pred             HHHhhcCC----------------------------------------ccccccCHHHHHHHHHhccCChhhCcChhhhc
Confidence            11111111                                        12255689999999999999999999999999


Q ss_pred             cCcCcCC
Q 045353          289 SHPWMSA  295 (358)
Q Consensus       289 ~hpwf~~  295 (358)
                      .||||.+
T Consensus       562 ~h~w~~~  568 (612)
T KOG0603|consen  562 AHPWFLS  568 (612)
T ss_pred             cCcchhc
Confidence            9999943

>cd07861 STKc_CDK1_euk Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 1 from higher eukaryotes-like

Probab=99.97  E-value=9.4e-32  Score=242.33  Aligned_cols=251  Identities=22%  Similarity=0.263  Sum_probs=177.5

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc---cccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND---SVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~---~~~~   95 (358)
                      .+|..+++|.+..... +...+.+.++.+...+  +.|++++...+... .....|+||||+. ++|.+++..   ...+
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~~v~e~~~-~~l~~~~~~~~~~~~~   98 (285)
T cd07861          23 KTGQIVAMKKIRLESEEEGVPSTAIREISLLKE--LQHPNIVCLQDVLM-QESRLYLIFEFLS-MDLKKYLDSLPKGQYM   98 (285)
T ss_pred             CCCcEEEEEEeccccccCCchHHHHHHHHHHHh--cCCCCEeeeEEEEe-eCCeEEEEEecCC-CCHHHHHhcCCCCCcC
Confidence            3577888888764332 2233555666555555  35677776665543 3567899999998 477766543   2457


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      ++.++..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||++......   .....+++.|+|||++.+.. 
T Consensus        99 ~~~~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  178 (285)
T cd07861          99 DAELVKSYLYQILQGILFCHSRRVLHRDLKPQNLLIDNKGVIKLADFGLARAFGIPVRVYTHEVVTLWYRAPEVLLGSPR  178 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEEcCCCcEEECcccceeecCCCcccccCCcccccccChHHhcCCCC
Confidence            888999999999999999999999998    9999999999999999998754322   23446789999999998754 


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|++||.+..      ..+.+..+...++.+....+........+......         +.
T Consensus       179 ~~~~~Dv~slG~il~~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  243 (285)
T cd07861         179 YSTPVDIWSIGTIFAEMATKKPLFHGDS------EIDQLFRIFRILGTPTEDVWPGVTSLPDYKNTFPK---------WK  243 (285)
T ss_pred             cCcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHHhCCCChhhhhcchhhHHHHhhccc---------cC
Confidence            7899999999999999999999997554      44555556666665544443222211111000000         00


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ...    ........++++.+||.+||+.||++|||+.+++.||||
T Consensus       244 ~~~----~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~ll~~~~~  285 (285)
T cd07861         244 KGS----LRSAVKNLDEDGLDLLEKMLIYDPAKRISAKKALNHPYF  285 (285)
T ss_pred             cch----hHHhcCCCCHHHHHHHHHHhcCChhhCCCHHHHhcCCCC
Confidence            000    001122357788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyclin A complex controls G2

>cd07841 STKc_CDK7 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 7

Probab=99.97  E-value=1.6e-31  Score=242.55  Aligned_cols=259  Identities=25%  Similarity=0.265  Sum_probs=186.1

Q ss_pred             ccCcccccccccCccchh----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-c
Q 045353           20 ESSASKENKSLYGDLTKN----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-V   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~   94 (358)
                      .+|..+++|.+.......    ....+..+.+...+  ..|.+++...+.... ...+|+||||+ +|+|.+++.... .
T Consensus        23 ~~~~~v~iK~~~~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~L~~~i~~~~~~   98 (298)
T cd07841          23 ETGRIVAIKKIKLGERKEAKDGINFTALREIKLLQE--LKHPNIIGLLDVFGH-KSNINLVFEFM-ETDLEKVIKDKSIV   98 (298)
T ss_pred             CCCcEEEEEEEeccccccccchhhHHHHHHHHHHhh--cCCCCChhhhheeec-CCEEEEEEccc-CCCHHHHHhccCCC
Confidence            357789999887655431    22334444444444  346667766655544 56789999999 999999987665 7


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-  166 (358)
                      +++..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....+++.|+|||.+.+. 
T Consensus        99 ~~~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  178 (298)
T cd07841          99 LTPADIKSYMLMTLRGLEYLHSNWILHRDLKPNNLLIASDGVLKLADFGLARSFGSPNRKMTHQVVTRWYRAPELLFGAR  178 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeecCCChhhEEEcCCCCEEEccceeeeeccCCCccccccccceeeeCHHHHhCCC
Confidence            8888999999999999999999999998    9999999999999999999765432   3334678899999998764 


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|.++|.+.+      +.+.+..+...++.+....+........+..... .         
T Consensus       179 ~~~~~~Dv~slG~il~e~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------  242 (298)
T cd07841         179 HYGVGVDMWSVGCIFAELLLRVPFLPGDS------DIDQLGKIFEALGTPTEENWPGVTSLPDYVEFKP-F---------  242 (298)
T ss_pred             CCCcHHHHHHHHHHHHHHHcCCccccCCc------cHHHHHHHHHHcCCCchhhhhhcccccccccccc-c---------
Confidence            47899999999999999999988887544      4455666666666655443322111111100000 0         


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREP  302 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~  302 (358)
                      +.    ..........+..+.+||.+||.+||++|||+.|+|.||||.+.+.+..+
T Consensus       243 ~~----~~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~e~l~~~~~~~~~~~~~~  294 (298)
T cd07841         243 PP----TPLKQIFPAASDDALDLLQRLLTLNPNKRITARQALEHPYFSNDPAPTPP  294 (298)
T ss_pred             CC----cchhhhcccccHHHHHHHHHHhcCCcccCcCHHHHhhCccccCCCCCCCC
Confidence            00    00011123346789999999999999999999999999999987655543

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 7 (CDK7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK7 plays essential roles in the cell cycle and in transcription. It associates with cyclin H and MAT1 and acts as a CDK-Activating Kinase (CAK) by phosphorylating and activating cell cycle CDKs (CDK1/2/4/6). In the brain, it activates CDK5. CDK7 is

>cd05102 PTKc_VEGFR3 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 3

Probab=99.97  E-value=8.2e-32  Score=248.95  Aligned_cols=222  Identities=15%  Similarity=0.146  Sum_probs=167.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      ++..||+|.+.........+.+.++.+..... ..|++++............+|+|||||+||+|.+++....       
T Consensus        36 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~  114 (338)
T cd05102          36 SCNTVAVKMLKEGATASEHKALMSELKILIHI-GNHLNVVNLLGACTKPNGPLMVIVEFCKYGNLSNFLRAKREFFSPYR  114 (338)
T ss_pred             cchhhheeccccccchHHHHHHHHHHHHHHHh-ccCcceeeEEeEecCCCCceEEEEecCCCCcHHHHHHhcchhccccc
Confidence            35579999998776666666777777666554 2677888877765555667899999999999998775321       


Q ss_pred             -------------------------------------------------------ccChhhhhHHHHhhhhccccccCCC
Q 045353           94 -------------------------------------------------------VNNESSRDNEVKNTSQGVKGHRRPS  118 (358)
Q Consensus        94 -------------------------------------------------------~~~~~~~~~~l~~~~~~~~~~h~~~  118 (358)
                                                                             .+....+..++.|++.|+.|+|+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~  194 (338)
T cd05102         115 EKSPKQRGRFRAMVEQSRVDRRIEAGQASVLFSRFQPSTSGSTNPPQETDDLWKSPLTMEDLICYSFQVARGMEFLASRK  194 (338)
T ss_pred             ccchhhhhhhhhhhhhhccccccccccCCccccccccccCcccccchhccccccCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence                                                                   2445567778899999999999999


Q ss_pred             CCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CC
Q 045353          119 RATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GD  188 (358)
Q Consensus       119 ~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~  188 (358)
                      ++||    +|||++.++.+||+|||+|+.....     .....+++.|+|||++.+..|+.++|||||||++|+|++ |.
T Consensus       195 ivHrDiKp~Nil~~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDiwslG~il~el~~~g~  274 (338)
T cd05102         195 CIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGSARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGA  274 (338)
T ss_pred             EECCCCccceEEEcCCCcEEEeecccccccccCcchhcccCCCCCccccCcHHhhcCCCCcccCHHHHHHHHHHHHhCCC
Confidence            9998    9999999999999999999754321     122345678999999999889999999999999999997 99


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      .||.+...     .......+..  +.                                       ....+...++.+.+
T Consensus       275 ~pf~~~~~-----~~~~~~~~~~--~~---------------------------------------~~~~~~~~~~~l~~  308 (338)
T cd05102         275 SPYPGVQI-----NEEFCQRLKD--GT---------------------------------------RMRAPENATPEIYR  308 (338)
T ss_pred             CCCCCCCc-----cHHHHHHHhc--CC---------------------------------------CCCCCCCCCHHHHH
Confidence            99975431     1111111100  00                                       01122344678899


Q ss_pred             HHHhccccCCCCCCCHHHHhc
Q 045353          269 FLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       269 li~~~L~~dP~~R~ta~elL~  289 (358)
                      |+.+||+.||++|||+.++++
T Consensus       309 li~~cl~~dp~~RPs~~el~~  329 (338)
T cd05102         309 IMLACWQGDPKERPTFSALVE  329 (338)
T ss_pred             HHHHHccCChhhCcCHHHHHH
Confidence            999999999999999999975

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 3 (VEGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR3 (or Flt4) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. V

>cd07845 STKc_CDK10 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 10

Probab=99.97  E-value=1.1e-31  Score=245.05  Aligned_cols=264  Identities=22%  Similarity=0.214  Sum_probs=185.5

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCccccccc-ccccC
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      .+|..+|+|.+....... ......++.....+  +.+.+++......... ....|+||||+.+ +|.+++.. ...+.
T Consensus        30 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~l~  106 (309)
T cd07845          30 TSGEIVALKKVRMDNERDGIPISSLREITLLLN--LRHPNIVELKEVVVGKHLDSIFLVMEYCEQ-DLASLLDNMPTPFS  106 (309)
T ss_pred             CCCcEEEEEEEEeccCCCCCcchhhHHHHHHHh--CCCCCCcceEEEEecCCCCeEEEEEecCCC-CHHHHHHhcccCCC
Confidence            457788999876543322 22334455555544  3556666555443322 2467999999986 67766654 34578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~  168 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .+...+++.|+|||++.+. .+
T Consensus       107 ~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  186 (309)
T cd07845         107 ESQVKCLMLQLLRGLQYLHENFIIHRDLKVSNLLLTDKGCLKIADFGLARTYGLPAKPMTPKVVTLWYRAPELLLGCTTY  186 (309)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECccceeeecCCccCCCCcccccccccChhhhcCCCCc
Confidence            88999999999999999999999999    8999999999999999999765432   3334568889999999874 48


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|.+||...+      ....+..+...++.++...+........       .... .....+.
T Consensus       187 ~~~~DvwslG~il~el~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~~~~~~~  252 (309)
T cd07845         187 TTAIDMWAVGCILAELLAHKPLLPGKS------EIEQLDLIIQLLGTPNESIWPGFSDLPL-------VGKF-TLPKQPY  252 (309)
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChhhchhhhcccc-------cccc-cccCCCC
Confidence            999999999999999999999997554      5677888888888766554322111000       0000 0000000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSM  304 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~~~  304 (358)
                      ....    ......++.+.+||.+||++||++|||++++++||||...+.+..+..
T Consensus       253 ~~~~----~~~~~~~~~~~~li~~ml~~dp~~R~t~~~il~h~~f~~~~~~~~~~~  304 (309)
T cd07845         253 NNLK----HKFPWLSEAGLRLLNFLLMYDPKKRATAEEALESSYFKEKPLPCEPEM  304 (309)
T ss_pred             CchH----HhccccCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccCCCCCCCCc
Confidence            0000    001123678889999999999999999999999999998777665543

Serine/Threonine Kinases (STKs), Cyclin-dependent protein Kinase 10 (CDK10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK10, also called PISSLRE, is essential for cell growth and proliferation, and acts through the G2/M phase of the cell cycle. CDK10 has also been identified as an important factor in endocrine therapy resistance in breast cancer. CDK10 silencing

>KOG4721 consensus Serine/threonine protein kinase, contains leucine zipper domain [Signal transduction mechanisms]

Probab=99.97  E-value=1.4e-32  Score=251.94  Aligned_cols=247  Identities=17%  Similarity=0.146  Sum_probs=184.2

Q ss_pred             chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccc
Q 045353           35 TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGH  114 (358)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  114 (358)
                      +.-+|.+..++-....-.-+.|++|+....+.+. ....+||||||.-|-|...+.....+.-........+|+.|+.|+
T Consensus       150 VAVKKV~elkETdIKHLRkLkH~NII~FkGVCtq-sPcyCIiMEfCa~GqL~~VLka~~~itp~llv~Wsk~IA~GM~YL  228 (904)
T KOG4721|consen  150 VAVKKVRELKETDIKHLRKLKHPNIITFKGVCTQ-SPCYCIIMEFCAQGQLYEVLKAGRPITPSLLVDWSKGIAGGMNYL  228 (904)
T ss_pred             ehhHHHhhhhhhhHHHHHhccCcceeeEeeeecC-CceeEEeeeccccccHHHHHhccCccCHHHHHHHHHHhhhhhHHH
Confidence            3334444444443333223578888887777654 567889999999999999999888888888899999999999999


Q ss_pred             cCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCC
Q 045353          115 RRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGD  188 (358)
Q Consensus       115 h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~  188 (358)
                      |.++||||    -||||..+..|||+|||.++.....  .-..+||..|||||++...+.+.++|||||||||||||||.
T Consensus       229 H~hKIIHRDLKSPNiLIs~~d~VKIsDFGTS~e~~~~STkMSFaGTVaWMAPEvIrnePcsEKVDIwSfGVVLWEmLT~E  308 (904)
T KOG4721|consen  229 HLHKIIHRDLKSPNILISYDDVVKISDFGTSKELSDKSTKMSFAGTVAWMAPEVIRNEPCSEKVDIWSFGVVLWEMLTGE  308 (904)
T ss_pred             HHhhHhhhccCCCceEeeccceEEeccccchHhhhhhhhhhhhhhhHhhhCHHHhhcCCcccccceehhHHHHHHHHhcC
Confidence            99999999    7999999999999999999776543  34569999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      .||..         .+..+.|..+ |          ..                          .-.+..|..++..|+-
T Consensus       309 iPYkd---------VdssAIIwGV-G----------sN--------------------------sL~LpvPstcP~Gfkl  342 (904)
T KOG4721|consen  309 IPYKD---------VDSSAIIWGV-G----------SN--------------------------SLHLPVPSTCPDGFKL  342 (904)
T ss_pred             CCccc---------cchheeEEec-c----------CC--------------------------cccccCcccCchHHHH
Confidence            99952         2222222111 0          00                          0133567788899999


Q ss_pred             HHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHhcCCcccccC
Q 045353          269 FLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAING  341 (358)
Q Consensus       269 li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (358)
                      ||+.||.-.|..||++.++|.|-=+...             ........+..+.+.+.+|...-....+...|
T Consensus       343 L~Kqcw~sKpRNRPSFrqil~HldIa~p-------------ell~~tee~yf~sq~swrEevk~h~~~it~~g  402 (904)
T KOG4721|consen  343 LLKQCWNSKPRNRPSFRQILLHLDIASP-------------ELLSTTEETYFKSQASWREEVKLHFEKITSEG  402 (904)
T ss_pred             HHHHHHhcCCCCCccHHHHHHHHhhcCH-------------HHhcccHHHHHHHHHHHHHHHHHhhhhhccCc
Confidence            9999999999999999999999544321             11122233344445555555555555555444

>PTZ00267 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=3.6e-32  Score=262.16  Aligned_cols=223  Identities=19%  Similarity=0.179  Sum_probs=168.8

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----ccccCh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SVVNNE   97 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~~~~~   97 (358)
                      +..|++|..... .......++++....+.  ..|++++........ .+..|+||||++||+|.+++..    ...+.+
T Consensus        93 ~~~vv~K~~~~~-~~~~~~~~~~E~~~l~~--l~Hpniv~~~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~~l~~  168 (478)
T PTZ00267         93 KEKVVAKFVMLN-DERQAAYARSELHCLAA--CDHFGIVKHFDDFKS-DDKLLLIMEYGSGGDLNKQIKQRLKEHLPFQE  168 (478)
T ss_pred             CeEEEEEEcccC-CHHHHHHHHHHHHHHHh--CCCCCEeEEEEEEEE-CCEEEEEEECCCCCCHHHHHHHHHhccCCCCH
Confidence            344566654322 22333455556555544  477888887776543 4678999999999999886642    345778


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .++..++.|++.++.++|+.+++||    +|||++.++.+||+|||+|+.....     ....+||+.|+|||++.+..+
T Consensus       169 ~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~~~~~~kL~DFgla~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  248 (478)
T PTZ00267        169 YEVGLLFYQIVLALDEVHSRKMMHRDLKSANIFLMPTGIIKLGDFGFSKQYSDSVSLDVASSFCGTPYYLAPELWERKRY  248 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEEECCcCHHhEEECCCCcEEEEeCcCceecCCccccccccccCCCccccCHhHhCCCCC
Confidence            8899999999999999999999999    9999999999999999999765432     234579999999999999889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+.+      ....+..+..  +..                                
T Consensus       249 ~~~~Dv~slG~~l~el~tg~~Pf~~~~------~~~~~~~~~~--~~~--------------------------------  288 (478)
T PTZ00267        249 SKKADMWSLGVILYELLTLHRPFKGPS------QREIMQQVLY--GKY--------------------------------  288 (478)
T ss_pred             CcHHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--CCC--------------------------------
Confidence            999999999999999999999996543      1121211110  110                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ..++...+..+.+||.+||..||++|||+.+++.|+|+..
T Consensus       289 -------~~~~~~~s~~~~~li~~~L~~dP~~Rps~~~~l~~~~~~~  328 (478)
T PTZ00267        289 -------DPFPCPVSSGMKALLDPLLSKNPALRPTTQQLLHTEFLKY  328 (478)
T ss_pred             -------CCCCccCCHHHHHHHHHHhccChhhCcCHHHHHhCHHHHH
Confidence                   0122334678999999999999999999999999999974

>cd05633 STKc_GRK3 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 3

Probab=99.97  E-value=6.1e-32  Score=243.15  Aligned_cols=231  Identities=18%  Similarity=0.181  Sum_probs=168.7

Q ss_pred             ccCcccccccccCccchhhh--HHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKNQK--KKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|.+.......+.  ....++........ ..+++++....... .....|+||||+.||+|.+++.....+.
T Consensus        17 ~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~l~   95 (279)
T cd05633          17 DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMTYAFH-TPDKLCFILDLMNGGDLHYHLSQHGVFS   95 (279)
T ss_pred             CCCcEEEEEEEEccccccchHHHHHHHHHHHHHHHhhCCCCcEeEEEEEEe-cCCeEEEEEecCCCCCHHHHHHhcCCCC
Confidence            45778899988765543322  22222221111111 23445554433332 2457899999999999999888777789


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhC-CCCCc
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLG-SKYST  170 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~-~~~~~  170 (358)
                      +..+..++.|++.++.++|+.+++|+    +|||++.++.++|+|||++..... ......||..|+|||++.+ ..++.
T Consensus        96 ~~~~~~i~~qi~~al~~lH~~~ivH~dikp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  175 (279)
T cd05633          96 EKEMRFYATEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGTAYDS  175 (279)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcCCCCCCHHHEEECCCCCEEEccCCcceeccccCccCcCCCcCccCHHHhcCCCCCCc
Confidence            99999999999999999999999999    999999999999999999865432 2234578999999999874 55899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||......    ....+..+.   .                                    
T Consensus       176 ~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~~~---~------------------------------------  212 (279)
T cd05633         176 SADWFSLGCMLFKLLRGHSPFRQHKTK----DKHEIDRMT---L------------------------------------  212 (279)
T ss_pred             hhhhHHHHHHHHHHHhCCCCcCCCCCc----CHHHHHHHh---h------------------------------------
Confidence            999999999999999999999654321    111111110   0                                    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                        ......+...+..+.++|.+||..||++|+     |++++++||||++.
T Consensus       213 --~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~~~~h~~~~~~  261 (279)
T cd05633         213 --TVNVELPDSFSPELKSLLEGLLQRDVSKRLGCLGRGAQEVKEHVFFKGI  261 (279)
T ss_pred             --cCCcCCccccCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHhCccccCC
Confidence              001123344577899999999999999999     69999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK3 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK3 (also known as beta-adrenergic receptor kinase 2) is wi

>cd07833 STKc_CDKL Catalytic domain of Cyclin-Dependent protein Kinase Like Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-31  Score=241.33  Aligned_cols=254  Identities=22%  Similarity=0.258  Sum_probs=187.8

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      ++..+++|.+..... ...++.+.++.+.....  .+.+++....... .....|+||||+.++.+..+......+...+
T Consensus        25 ~~~~v~vK~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~  101 (288)
T cd07833          25 TGEIVAIKKFKESEDDEDVKKTALREVKVLRQL--RHENIVNLKEAFR-RKGRLYLVFEYVERTLLELLEASPGGLPPDA  101 (288)
T ss_pred             CCcEEEEehhhhhcccccchhHHHHHHHHHHhc--CCCCeeehhheEE-ECCEEEEEEecCCCCHHHHHHhcCCCCCHHH
Confidence            567899999876543 34456777777666654  3555555554443 3567899999999998887777666688899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCC-CCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......    .....++..|+|||++.+. .++.
T Consensus       102 ~~~~~~~i~~~l~~LH~~~i~H~dl~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~  181 (288)
T cd07833         102 VRSYIWQLLQAIAYCHSHNIIHRDIKPENILVSESGVLKLCDFGFARALRARPASPLTDYVATRWYRAPELLVGDTNYGK  181 (288)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEEeeecccccCCCccccccCcccccCCcCCchhcCCCCcCc
Confidence            99999999999999999999999    9999999999999999998765432    3345788999999999988 7899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|.+||.+.+      ..+.+..+...++..++...........+.. .         .......
T Consensus       182 ~~Dv~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~  245 (288)
T cd07833         182 PVDVWAIGCIMAELLDGEPLFPGDS------DIDQLYLIQKCLGPLPPSHQELFSSNPRFAG-V---------AFPEPSQ  245 (288)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHhhhcccCccccc-c---------ccCCCCC
Confidence            9999999999999999999997554      4566677777777766543322211111100 0         0000000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      .......++..++.++.+||.+||..||++|||++++++||||
T Consensus       246 ~~~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~f  288 (288)
T cd07833         246 PESLERRYPGKVSSPALDFLKACLRMDPKERLTCDELLQHPYF  288 (288)
T ss_pred             cHHHHHhcCCccchHHHHHHHHHhccCchhcccHHHHhcCCCC
Confidence            0000112334457889999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like (CDKL) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDKL1-5 and similar proteins. Some CDKLs, like CDKL1 and CDKL3, may be implicated in transformation and others, like CDKL3 and CDKL5, are associated with mental retardation when impaired. CDKL2 plays a role in learning

>cd05597 STKc_DMPK_like Catalytic domain of Myotonic Dystrophy protein kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=7.6e-32  Score=248.41  Aligned_cols=231  Identities=13%  Similarity=0.140  Sum_probs=166.3

Q ss_pred             ccCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccC
Q 045353           20 ESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      .+|..+|+|++...  ......+.++++......  ..+.+++....... ....+|+||||+.||+|.+++.. ...+.
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~~~~~~  100 (331)
T cd05597          24 NTGQVYAMKILNKWEMLKRAETACFREERDVLVN--GDRRWITNLHYAFQ-DENNLYLVMDYYVGGDLLTLLSKFEDRLP  100 (331)
T ss_pred             CCCCEEEEEEEEHHHHhhhhhHHHHHHHHHHHHh--CCCCCCCceEEEEe-cCCeEEEEEecCCCCcHHHHHHHhcCCCC
Confidence            35678899998642  222333445555444433  35666666655443 34578999999999999998865 45678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhC---
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLG---  165 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~---  165 (358)
                      +..+..++.|++.++.|+|+.+++|+    +|||++.++.+||+|||++......    ....+||+.|+|||++.+   
T Consensus       101 ~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  180 (331)
T cd05597         101 EDMARFYLAEMVLAIDSVHQLGYVHRDIKPDNVLLDKNGHIRLADFGSCLRLLADGTVQSNVAVGTPDYISPEILQAMED  180 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEECCCCHHHEEECCCCCEEEEECCceeecCCCCCccccceeccccccCHHHHhhccc
Confidence            88999999999999999999999999    8999999999999999998654322    122479999999999974   


Q ss_pred             --CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          166 --SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       166 --~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                        ..++.++||||+||++|+|++|+.||.+.+      ..+....+.......+                          
T Consensus       181 ~~~~~~~~~DiwslG~~l~el~~g~~Pf~~~~------~~~~~~~i~~~~~~~~--------------------------  228 (331)
T cd05597         181 GKGRYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHKEHFQ--------------------------  228 (331)
T ss_pred             cccCCCCcceeehhhhHHHHHhhCCCCCCCCC------HHHHHHHHHcCCCccc--------------------------
Confidence              347889999999999999999999996543      1222222211000000                          


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                                 ........+..+.+||.+||..++.+  |+++.++++||||...
T Consensus       229 -----------~~~~~~~~~~~~~~li~~ll~~~~~r~~r~~~~~~l~hp~~~~~  272 (331)
T cd05597         229 -----------FPPDVTDVSEEAKDLIRRLICSPETRLGRNGLQDFKDHPFFEGI  272 (331)
T ss_pred             -----------CCCccCCCCHHHHHHHHHHccCcccccCCCCHHHHhcCCCCCCC
Confidence                       00011224678899999999765544  7899999999999864

Serine/Threonine Kinases (STKs), Myotonic Dystrophy protein kinase (DMPK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The DMPK-like subfamily is composed of DMPK and DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK). Three isoforms of MRCK are known, named alpha, beta and gamma. The DMPK gene is implicated in myotonic dystrophy 1 (DM1), an inherited multisystemic disorder with symptoms that include muscle hyperexcitability, progressive muscle weakness and wasting, cataract development, testicular atrophy,

>cd06615 PKc_MEK Catalytic domain of the dual-specificity Protein Kinase, MAP/ERK Kinase

Probab=99.97  E-value=4.9e-32  Score=247.23  Aligned_cols=260  Identities=16%  Similarity=0.166  Sum_probs=178.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+..........++.++.+...+.  .|++++.+..... .+...|+||||++||+|.+++.....+.+..
T Consensus        24 ~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~ey~~~~~L~~~l~~~~~~~~~~  100 (308)
T cd06615          24 PSGLIMARKLIHLEIKPAIRNQIIRELKVLHEC--NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPENI  100 (308)
T ss_pred             CCCeEEEEEEeccccCHHHHHHHHHHHHHHHhC--CCCCCCeEEEEEe-eCCEEEEEeeccCCCcHHHHHHhcCCCCHHH
Confidence            356677888887666665666677777666653  6677777765443 3568899999999999999998777788889


Q ss_pred             hhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.|+|+ .+++|+    +|||++.++.+||+|||++...... ....+|++.|+|||++.+..++.++|
T Consensus       101 ~~~~~~~i~~~l~~lH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  180 (308)
T cd06615         101 LGKISIAVLRGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYTVQSD  180 (308)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEEECCCChHHEEEecCCcEEEccCCCcccccccccccCCCCcCccChhHhcCCCCCccch
Confidence            99999999999999997 588888    9999999999999999998654322 34557899999999998888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC--hhhhhccCCchhhhhccCCcchhh
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS--RDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      ||||||++|+|++|+.||.....       ..   ....++..+..........  ................    ....
T Consensus       181 iwslG~~l~~l~~g~~p~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  246 (308)
T cd06615         181 IWSLGLSLVEMAIGRYPIPPPDA-------KE---LEAMFGRPVSEGEAKESHRPVSGHPPDSPRPMAIFEL----LDYI  246 (308)
T ss_pred             HHHHHHHHHHHHhCCCCCCCcch-------hh---HHHhhcCccccccccCCcccccCCCCCccchhhHHHH----HHHH
Confidence            99999999999999999964331       11   1111221111000000000  0000000000000000    0000


Q ss_pred             HH-hhhcC-ChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LV-EKYDF-NERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~-~~~~~-~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .. ..... ....+.++.+|+.+||..||++|||+.|+++||||...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~  293 (308)
T cd06615         247 VNEPPPKLPSGAFSDEFQDFVDKCLKKNPKERADLKELTKHPFIKRA  293 (308)
T ss_pred             hcCCCccCcCcccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhhc
Confidence            00 00001 11246789999999999999999999999999999764

Protein kinases (PKs), MAP/ERK kinase (MEK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MEK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MEK1 and MEK2 are dual-specificity PKs that phosphorylate and activate the down

>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.2e-32  Score=253.66  Aligned_cols=228  Identities=20%  Similarity=0.219  Sum_probs=171.4

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc---cChhhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV---NNESSR  100 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~---~~~~~~  100 (358)
                      .+|||-....-++. ..-+..+.+-..++  .|.+||+-... ...++.+-|.||-++||||.+++++...   -++..+
T Consensus       602 rIaIKEIpekdsr~-~QPLhEEIaLH~~L--rHkNIVrYLGs-~senGf~kIFMEqVPGGSLSsLLrskWGPlKDNEstm  677 (1226)
T KOG4279|consen  602 RIAIKEIPEKDSRE-VQPLHEEIALHSTL--RHKNIVRYLGS-VSENGFFKIFMEQVPGGSLSSLLRSKWGPLKDNESTM  677 (1226)
T ss_pred             EEEeeecccccchh-hccHHHHHHHHHHH--hhHhHHHHhhc-cCCCCeEEEEeecCCCCcHHHHHHhccCCCccchhHH
Confidence            45666554433322 12233444444443  35566665554 3445677899999999999999987542   378899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCC--CCc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK--YST  170 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~--~~~  170 (358)
                      ..+-+||++|+.|+|+++|+||    +|||++. .|.+||+|||.++...   ....+..||..|||||++..++  |+.
T Consensus       678 ~fYtkQILeGLkYLHen~IVHRDIKGDNVLvNTySGvlKISDFGTsKRLAginP~TETFTGTLQYMAPEvIDqG~RGYG~  757 (1226)
T KOG4279|consen  678 NFYTKQILEGLKYLHENKIVHRDIKGDNVLVNTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDQGPRGYGK  757 (1226)
T ss_pred             HHHHHHHHHHhhhhhhcceeeccccCCcEEEeeccceEEecccccchhhccCCccccccccchhhhChHhhccCCcCCCc
Confidence            9999999999999999999999    9999975 5899999999997653   3355668999999999999765  999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++.||.||++||..-...        -+.|+++ |..                                  
T Consensus       758 aADIWS~GCT~vEMATGrPPF~Elgsp--------qAAMFkV-Gmy----------------------------------  794 (1226)
T KOG4279|consen  758 AADIWSFGCTMVEMATGRPPFVELGSP--------QAAMFKV-GMY----------------------------------  794 (1226)
T ss_pred             hhhhhhccceeEeeccCCCCeeecCCh--------hHhhhhh-cce----------------------------------
Confidence            999999999999999999999643311        1112111 110                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                        .-..+.|...+.+++.||.+|+..||.+||+|.++|+.||++..+...
T Consensus       795 --KvHP~iPeelsaeak~FilrcFepd~~~R~sA~~LL~DpFlq~~~kk~  842 (1226)
T KOG4279|consen  795 --KVHPPIPEELSAEAKNFILRCFEPDPCDRPSAKDLLQDPFLQHNNKKP  842 (1226)
T ss_pred             --ecCCCCcHHHHHHHHHHHHHHcCCCcccCccHHHhccCcccccCCCCC
Confidence              012346777899999999999999999999999999999999764333

>cd07831 STKc_MOK Catalytic domain of the Serine/Threonine Kinase, MAPK/MAK/MRK Overlapping Kinase

Probab=99.97  E-value=2.1e-31  Score=239.66  Aligned_cols=252  Identities=20%  Similarity=0.227  Sum_probs=177.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      .++..+|+|.+.............++....... ..+++++........ ..+.+|+||||++| +|.+++.. ...+.+
T Consensus        22 ~~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~l-~~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~   99 (282)
T cd07831          22 KTGKYYAIKCMKKHFKSLEQVNNLREIQALRRL-SPHPNILRLIEVLFDRKTGRLALVFELMDM-NLYELIKGRKRPLPE   99 (282)
T ss_pred             CCCcEEEEEEehhccCCchhhhHHHHHHHHhhc-CCCCCccceEEEEecCCCCcEEEEEecCCc-cHHHHHHhccCCCCH
Confidence            356778899887765443333333444444433 245666665554332 23678999999986 66666554 456788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC-CCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      .++..++.+++.++.++|+.+++|+    +||+++. +.+||+|||++......  .....++..|+|||++.+. .++.
T Consensus       100 ~~~~~~~~qi~~~L~~LH~~~i~H~dl~p~ni~l~~-~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  178 (282)
T cd07831         100 KRVKSYMYQLLKSLDHMHRNGIFHRDIKPENILIKD-DILKLADFGSCRGIYSKPPYTEYISTRWYRAPECLLTDGYYGP  178 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecccCHHHEEEcC-CCeEEEecccccccccCCCcCCCCCCcccCChhHhhcCCCCCc
Confidence            9999999999999999999999999    9999999 99999999999765432  3345689999999987654 4788


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|.+||.+.+      ..+.+..+...++.++..+..........     ..      ...  ..
T Consensus       179 ~~Di~slGv~l~el~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~------~~~--~~  239 (282)
T cd07831         179 KMDIWAVGCVFFEILSLFPLFPGTN------ELDQIAKIHDVLGTPDAEVLKKFRKSRHM-----NY------NFP--SK  239 (282)
T ss_pred             chhHHHHHHHHHHHHcCCcCCCCCC------HHHHHHHHHHHcCCCCHHHHHhhcccccc-----cc------cCc--cc
Confidence            9999999999999999999997654      45667777777777766542211110000     00      000  00


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ............+..+.+||.+||.+||++|||++++++||||
T Consensus       240 ~~~~~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~l~~~~~  282 (282)
T cd07831         240 KGTGLRKLLPNASAEGLDLLKKLLAYDPDERITAKQALRHPYF  282 (282)
T ss_pred             ccccHHHHcccccHHHHHHHHHHhccCcccccCHHHHhhCCCC
Confidence            0000011122447899999999999999999999999999998

Serine/Threonine Kinases (STKs), MAPK/MAK/MRK Overlapping Kinase (MOK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MOK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MOK, also called Renal tumor antigen 1 (RAGE-1), is widely expressed and is enriched in testis, kidney, lung, and brain. It is expressed in approximately 50% of renal cell carcinomas (RCC) and is a potential target for immunotherapy. MOK is stabilized by its association with the HSP90 molecular chaperone. It is induced by the transcription factor Cdx2 and may be involved in regulating intestinal epithelial development and differentiation.

>cd05630 STKc_GRK6 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 6

Probab=99.97  E-value=6.8e-32  Score=243.58  Aligned_cols=229  Identities=16%  Similarity=0.211  Sum_probs=168.8

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      .+|..+|+|.+........  ...+.++.....+  ..+.+++........ ....|+||||++||+|.+++...  ..+
T Consensus        23 ~~~~~~avK~~~~~~~~~~~~~~~~~~E~~il~~--l~~~~i~~~~~~~~~-~~~~~lv~e~~~g~~L~~~l~~~~~~~l   99 (285)
T cd05630          23 ATGKMYACKKLEKKRIKKRKGESMALNEKQILEK--VNSRFVVSLAYAYET-KDALCLVLTLMNGGDLKFHIYHMGEAGF   99 (285)
T ss_pred             CCCceEEEEEEehhhccchHHHHHHHHHHHHHHh--CCCCCeeeeeEEEec-CCEEEEEEEecCCCcHHHHHHHhcccCC
Confidence            3566788888765433322  2334455554444  355666655444333 35689999999999999877532  246


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..+..++.|++.++.|+|+.+++|+    +|||++.++.++|+|||++.....  .....+||..|+|||++.+..++
T Consensus       100 ~~~~~~~~~~qi~~~l~~lH~~~iiH~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  179 (285)
T cd05630         100 EEGRAVFYAAEICCGLEDLHQERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYT  179 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHEEECCCCCEEEeeccceeecCCCccccCCCCCccccChHHHcCCCCC
Confidence            788899999999999999999999998    999999999999999999976532  23345899999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||.......   .......+.   ...                                 
T Consensus       180 ~~~DiwslG~~l~~l~~g~~Pf~~~~~~~---~~~~~~~~~---~~~---------------------------------  220 (285)
T cd05630         180 FSPDWWALGCLLYEMIAGQSPFQQRKKKI---KREEVERLV---KEV---------------------------------  220 (285)
T ss_pred             CccccHHHHHHHHHHHhCCCCCCCCCccc---hHHHHHhhh---hhh---------------------------------
Confidence            99999999999999999999996532110   011111110   000                                 


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~  295 (358)
                           ...++...++.+.+|+.+||+.||++|||     ++|+++||||..
T Consensus       221 -----~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~~~~~h~~~~~  266 (285)
T cd05630         221 -----QEEYSEKFSPDARSLCKMLLCKDPKERLGCQGGGAREVKEHPLFKQ  266 (285)
T ss_pred             -----hhhcCccCCHHHHHHHHHHhhcCHHHccCCCCCchHHHHcChhhhc
Confidence                 00122334677899999999999999999     999999999985

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK6 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK6 is widely expressed in many tissues. t is expressed as

>cd08223 STKc_Nek4 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 4

Probab=99.97  E-value=3.1e-31  Score=235.27  Aligned_cols=224  Identities=17%  Similarity=0.244  Sum_probs=169.4

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccCh
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~   97 (358)
                      +|..+++|.+.... .....+.+.++.+...+  ..+.+++.........+..+|+||||++|++|.+++..  ...+++
T Consensus        24 ~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~l~~  101 (257)
T cd08223          24 DGKQYVIKKLNLRNASRRERKAAEQEAQLLSQ--LKHPNIVAYRESWEGEDGLLYIVMGFCEGGDLYHKLKEQKGKLLPE  101 (257)
T ss_pred             CCcEEEEEEEehhhcCHHHHHHHHHHHHHHHh--CCCCCeeeeeeeecCCCCEEEEEecccCCCcHHHHHHHhcCCCCCH
Confidence            45578888876433 33444556666555444  34566666555444445568999999999999998865  234788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.....   ......|++.|+|||++.+..++.
T Consensus       102 ~~~~~~~~~l~~~l~~lH~~~i~H~di~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  181 (257)
T cd08223         102 NQVVEWFVQIAMALQYLHEKHILHRDLKTQNVFLTRTNIIKVGDLGIARVLENQCDMASTLIGTPYYMSPELFSNKPYNY  181 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCchhEEEecCCcEEEecccceEEecccCCccccccCCcCccChhHhcCCCCCc
Confidence            8999999999999999999999998    999999999999999999976532   223447899999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++++|++|..||....      .......+..  +..+                                 
T Consensus       182 ~~Dv~slG~il~~l~~g~~~~~~~~------~~~~~~~~~~--~~~~---------------------------------  220 (257)
T cd08223         182 KSDVWALGCCVYEMATLKHAFNAKD------MNSLVYRIIE--GKLP---------------------------------  220 (257)
T ss_pred             hhhhHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHh--cCCC---------------------------------
Confidence            9999999999999999999996432      1111111110  1110                                 


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                            ..+...++.+.+|+.+||+.||++|||+.++++||||
T Consensus       221 ------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  257 (257)
T cd08223         221 ------PMPKDYSPELGELIATMLSKRPEKRPSVKSILRQPYI  257 (257)
T ss_pred             ------CCccccCHHHHHHHHHHhccCcccCCCHHHHhcCCCC
Confidence                  1123346789999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 4 (Nek4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek4 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. Nek4 is highly abundant in the testis. Its specific function is unknown.

>cd06625 STKc_MEKK3_like Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-31  Score=238.39  Aligned_cols=225  Identities=17%  Similarity=0.185  Sum_probs=170.5

Q ss_pred             ccCcccccccccCccch----hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTK----NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      ++|..+++|.+......    .+.+.++++.+...+  ..+++++......... ..+|+||||++|++|.+++.....+
T Consensus        25 ~~~~~~~lk~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~-~~~~~v~e~~~~~~l~~~~~~~~~~  101 (263)
T cd06625          25 DTGRELAVKQVPFDPDSPETKKEVNALECEIQLLKN--LQHERIVQYYGCLRDD-ETLSIFMEYMPGGSVKDQLKAYGAL  101 (263)
T ss_pred             CCCcEEEEEEEeecccchhhHHHHHHHHHHHHHHHh--CCCCCeeeeEEEEccC-CeEEEEEEECCCCcHHHHHHHhCCC
Confidence            45678888887643221    122445556555444  4566776665554433 4899999999999999988877778


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++..+..++.+++.++.++|+.+++|+    +||++++++.++|+|||++......      .....|+..|+|||++.+
T Consensus       102 ~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  181 (263)
T cd06625         102 TETVTRKYTRQILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICSSGTGMKSVTGTPYWMSPEVISG  181 (263)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceeccccccccccccCCCcCccccCcceecc
Confidence            888899999999999999999999998    9999999999999999999654321      133568889999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..++.++||||+||++|+|++|+.||....      ....   +.......                             
T Consensus       182 ~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~---~~~~~~~~-----------------------------  223 (263)
T cd06625         182 EGYGRKADVWSVGCTVVEMLTEKPPWAEFE------AMAA---IFKIATQP-----------------------------  223 (263)
T ss_pred             CCCCchhhhHHHHHHHHHHHhCCCCccccc------hHHH---HHHHhccC-----------------------------
Confidence            889999999999999999999999996432      1111   11110000                             


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                              .....+...+..+.+||.+||..+|.+|||+.++++||||
T Consensus       224 --------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  263 (263)
T cd06625         224 --------TNPQLPSHVSPDARNFLRRTFVENAKKRPSAEELLRHFFV  263 (263)
T ss_pred             --------CCCCCCccCCHHHHHHHHHHhhcCcccCCCHHHHhhCCCC
Confidence                    0112233456788999999999999999999999999998

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades t

>cd07832 STKc_CCRK Catalytic domain of the Serine/Threonine Kinase, Cell Cycle-Related Kinase

Probab=99.97  E-value=2.8e-31  Score=239.27  Aligned_cols=253  Identities=23%  Similarity=0.292  Sum_probs=183.7

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      .+|..+++|.+..... ......+.++.+...+.  .+++++........ ....|+||||+ |++|.+++.. ...+.+
T Consensus        23 ~~~~~~~vK~~~~~~~~~~~~~~~~~e~~~l~~~--~~~~i~~~~~~~~~-~~~~~~v~e~~-~~~L~~~~~~~~~~~~~   98 (286)
T cd07832          23 ETGETVALKKVALRRLEGGIPNQALREIKALQAC--QHPYVVKLLDVFPH-GSGFVLVMEYM-PSDLSEVLRDEERPLPE   98 (286)
T ss_pred             CCCceEEEEEEEcccccchhhHHHHHHHHHHHhC--CCCCCcceeeEEec-CCeeEEEeccc-CCCHHHHHHhcCCCCCH
Confidence            4677889998876543 34455666666665553  46666665554333 56789999999 9999998753 345788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC-C
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      .++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......    .....|+..|+|||++.+.. +
T Consensus        99 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  178 (286)
T cd07832          99 AQVKSYMRMLLKGVAYMHANGIMHRDLKPANLLISADGVLKIADFGLARLFSEEEPRLYSHQVATRWYRAPELLYGARKY  178 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCcCHHHEEEcCCCcEEEeeeeecccccCCCCCccccccCcccccCceeeeccccC
Confidence            8999999999999999999999998    8999999999999999999765432    34557899999999987654 6


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|.++|.+..      +...+..+...++.+....+........+          ....+...
T Consensus       179 ~~~~Di~slG~~l~~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~  242 (286)
T cd07832         179 DPGVDLWAVGCIFAELLNGSPLFPGEN------DIEQLAIVFRTLGTPNEETWPGLTSLPDY----------NKITFPES  242 (286)
T ss_pred             CchhHHHHHHHHHHHHHcCCcCcCCCC------HHHHHHHHHHHcCCCChHHHhhccCcchh----------hcccCCCC
Confidence            899999999999999999988886544      45667777777776655443321111100          00000000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                      ....  .....+..+..+.+||.+||..||.+|||++++|+||||.
T Consensus       243 ~~~~--~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~l~h~~~~  286 (286)
T cd07832         243 KPIP--LEEIFPDASPEALDLLKGLLVYDPSKRLSAAEALRHPYFT  286 (286)
T ss_pred             Ccch--HHHhCCCccHHHHHHHHHHhccChhhCCCHHHHhhCcCcC
Confidence            0000  0011223457899999999999999999999999999995

Serine/Threonine Kinases (STKs), Cell Cycle-Related Kinase (CCRK) p42 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CCRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CCRK was previously called p42. It is a Cyclin-Dependent Kinase (CDK)-Activating Kinase (CAK) which is essential for the activation of CDK2. It is indispensable for cell growth and has been implicated in the progression of glioblastoma multiforme. In the heart, a splice variant of CCRK with a different C-terminal half is expressed, this variant promotes cardiac cell growth and survival and is significantly down-regulated during the development of hea

>KOG0596 consensus Dual specificity; serine/threonine and tyrosine kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=99.97  E-value=1.1e-31  Score=245.33  Aligned_cols=207  Identities=18%  Similarity=0.225  Sum_probs=153.0

Q ss_pred             HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh-hhhhHHHHhhhhccccccCCC
Q 045353           40 KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE-SSRDNEVKNTSQGVKGHRRPS  118 (358)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~h~~~  118 (358)
                      .-++.+.+-...+ -++..++.+++.+-+ ++.+|+|||| ..-+|.+.+........ ..++.+..|++.++.+.|+.|
T Consensus       404 ~gy~nEI~lL~KL-kg~~~IIqL~DYEv~-d~~lYmvmE~-Gd~DL~kiL~k~~~~~~~~~lk~ywkqML~aV~~IH~~g  480 (677)
T KOG0596|consen  404 DGYRNEIALLNKL-KGHDKIIQLYDYEVT-DGYLYMVMEC-GDIDLNKILKKKKSIDPDWFLKFYWKQMLLAVKTIHQHG  480 (677)
T ss_pred             HHHHHHHHHHHHh-cCCceEEEEeeeecc-CceEEEEeec-ccccHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHhc
Confidence            3344454444444 355677777665544 8899999995 45678888876554333 588999999999999999999


Q ss_pred             CCCc----ccccccCCCcEEEEecCCceecCCCCC-----CCccCCCcchhHHHhCCC-----------CCcchhhhhhh
Q 045353          119 RATR----KNLLAAVDVQCKLVDFGNACWTHKQFT-----NDIQTRQYRCPEVLLGSK-----------YSTSADLWSFA  178 (358)
Q Consensus       119 ~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~-----~~~gt~~Y~aPE~l~~~~-----------~~~~~DiwSlG  178 (358)
                      |||-    .|+|+- .|.+||+|||+|.......+     +.+||+-||+||.+....           .+.++||||||
T Consensus       481 IVHSDLKPANFLlV-kG~LKLIDFGIA~aI~~DTTsI~kdsQvGT~NYMsPEAl~~~~s~~~~~~~k~Ki~r~SDvWSLG  559 (677)
T KOG0596|consen  481 IVHSDLKPANFLLV-KGRLKLIDFGIANAIQPDTTSIVKDSQVGTVNYMSPEALTDMSSSRENGKSKIKISRKSDVWSLG  559 (677)
T ss_pred             eeecCCCcccEEEE-eeeEEeeeechhcccCccccceeeccccCcccccCHHHHhhccccccCCCcceeecCccchhhhh
Confidence            9987    899875 48899999999987766544     349999999999997432           56889999999


Q ss_pred             HHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcC
Q 045353          179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDF  258 (358)
Q Consensus       179 vil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (358)
                      ||||+|+.|++||..        -...++.+..+..+-.                                     ..+|
T Consensus       560 CILYqMvYgktPf~~--------~~n~~aKl~aI~~P~~-------------------------------------~Ief  594 (677)
T KOG0596|consen  560 CILYQMVYGKTPFGQ--------IINQIAKLHAITDPNH-------------------------------------EIEF  594 (677)
T ss_pred             hHHHHHHhcCCchHH--------HHHHHHHHHhhcCCCc-------------------------------------cccc
Confidence            999999999999952        1123444443332210                                     0011


Q ss_pred             Chhh-HHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          259 NERD-AKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       259 ~~~~-~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      +.-- ..++++++..||.+||.+|||+.++|+|||++.
T Consensus       595 p~~~~~~~li~~mK~CL~rdPkkR~si~eLLqhpFl~~  632 (677)
T KOG0596|consen  595 PDIPENDELIDVMKCCLARDPKKRWSIPELLQHPFLQI  632 (677)
T ss_pred             cCCCCchHHHHHHHHHHhcCcccCCCcHHHhcCccccc
Confidence            1111 123899999999999999999999999999985

>cd07834 STKc_MAPK Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase

Probab=99.97  E-value=4.5e-31  Score=243.14  Aligned_cols=258  Identities=23%  Similarity=0.283  Sum_probs=191.3

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC----CCCCcccccCCCCCccccccccccc
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS----PDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      +|..+++|.+..... ....+++.++.+...+.  .+.+++..........    ..+|+||||+.+ +|.+++.....+
T Consensus        24 ~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~~~~l  100 (330)
T cd07834          24 TGRKVAIKKISNVFDDLIDAKRILREIKLLRHL--RHENIIGLLDILRPPSPEDFNDVYIVTELMET-DLHKVIKSPQPL  100 (330)
T ss_pred             CCcEEEEEeeccccccchhhhhHHHHHHHHHhc--CCcchhhhhhhhcccCcccccceEEEecchhh-hHHHHHhCCCCC
Confidence            467889998887653 44556677777766664  4565555555443332    578999999995 788888777788


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++..+..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++......      .....+++.|+|||++.+
T Consensus       101 ~~~~~~~i~~~l~~~l~~LH~~gi~H~dlkp~nili~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  180 (330)
T cd07834         101 TDDHIQYFLYQILRGLKYLHSANVIHRDLKPSNILVNSNCDLKICDFGLARGVDPDEDEKGFLTEYVVTRWYRAPELLLS  180 (330)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccCceEeecccccccccccccccccCcCCceeeec
Confidence            899999999999999999999999998    9999999999999999999765432      334578999999999998


Q ss_pred             C-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 S-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      . .++.++||||+||++|+|++|.+||.+.+      .......+...++.++...+.......       .........
T Consensus       181 ~~~~~~~sDi~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  247 (330)
T cd07834         181 SSRYTKAIDIWSVGCIFAELLTRKPLFPGRD------YIDQLNLIVEVLGTPSEEDLKFITSEK-------ARNYLKSLP  247 (330)
T ss_pred             ccCCCcchhHHHHHHHHHHHHcCCCCcCCCC------HHHHHHHHHHhcCCCChhHhhhccccc-------hhhHHhhcc
Confidence            8 68999999999999999999999998665      567777888888887765443211000       000000000


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ....    .......+..+..+.+||.+||++||.+|||++++++||||.....
T Consensus       248 ~~~~----~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~~~~~~~~~  297 (330)
T cd07834         248 KKPK----KPLSKLFPGASPEAIDLLEKMLVFDPKKRITADEALAHPYLAQLHD  297 (330)
T ss_pred             cCCc----chhHHhcccCCHHHHHHHHHHccCChhhCCCHHHHHhCccHHhhcc
Confidence            0000    0000112335778999999999999999999999999999987544

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs serve as important mediators of cellular responses to extracellular signals. They control critical cellular functions including differentiation, proliferation, migration, and apoptosis. They are also implicated in the pathogenesis of many diseases including multiple types of cancer, stroke, diabetes, and chronic inflammation. Typical MAPK pathways involve a triple kinase core cascade comprising of the MAPK, which is phosphorylated and

>cd06631 STKc_YSK4 Catalytic domain of the Protein Serine/Threonine Kinase, Yeast Sps1/Ste20-related kinase 4

Probab=99.97  E-value=3e-31  Score=236.60  Aligned_cols=227  Identities=20%  Similarity=0.197  Sum_probs=169.8

Q ss_pred             cccCcccccccccCccc-----hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDLT-----KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..+|+|.+.....     ..+..++++++......  .+.+++....... .....|+||||+.||+|.+++....
T Consensus        21 ~~~~~~~avk~~~~~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~   97 (265)
T cd06631          21 TNQGQLIAVKQVELDTSNVLAAEKEYEKLQEEVDLLKSL--KHVNIVQYLGTCL-DDNTISIFMEFVPGGSISSILNRFG   97 (265)
T ss_pred             EcCCCeEEEEEeecCccchhhHHHHHHHHHHHHHHHHhc--CCCCEeeEeeEee-cCCeEEEEEecCCCCcHHHHHHhcC
Confidence            45677788887764332     22334555565554443  4555655544433 3478899999999999999998766


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---------CCCCCCccCCCcchh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---------KQFTNDIQTRQYRCP  160 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---------~~~~~~~gt~~Y~aP  160 (358)
                      .+.+..+..++.+++.++.++|+.+++|+    +||++++++.++|+|||++....         .......|+..|+||
T Consensus        98 ~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  177 (265)
T cd06631          98 PLPEPVFCKYTKQILDGVAYLHNNCVVHRDIKGNNVMLMPNGIIKLIDFGCARRLAWVGLHGTHSNMLKSMHGTPYWMAP  177 (265)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCcccCCcCHHhEEECCCCeEEeccchhhHhhhhccccccccccccccCCCccccCh
Confidence            77888999999999999999999999988    99999999999999999986532         112344689999999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      |++.+..++.++|+|||||++|+|++|..||....      .......+....+..                        
T Consensus       178 e~~~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~------------------------  227 (265)
T cd06631         178 EVINESGYGRKSDIWSIGCTVFEMATGKPPLASMD------RLAAMFYIGAHRGLM------------------------  227 (265)
T ss_pred             hhhcCCCCcchhhHHHHHHHHHHHHhCCCccccCC------hHHHHHHhhhccCCC------------------------
Confidence            99998889999999999999999999999996432      111111111110111                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                     ...+...+..+.+||.+||..+|++|||+.++++||||
T Consensus       228 ---------------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~  265 (265)
T cd06631         228 ---------------PRLPDSFSAAAIDFVTSCLTRDQHERPSALQLLRHDFL  265 (265)
T ss_pred             ---------------CCCCCCCCHHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence                           01223346788999999999999999999999999998

Serine/threonine kinases (STKs), yeast Sps1/Ste20-related kinase 4 (YSK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The YSK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. YSK4 is a putative MAPKKK, whose mammalian gene has been isolated. MAPKKKs (MKKKs or MAP3Ks) phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals.

>cd05580 STKc_PKA Catalytic domain of the Protein Serine/Threonine Kinase, cAMP-dependent protein kinase

Probab=99.97  E-value=1e-31  Score=242.96  Aligned_cols=227  Identities=18%  Similarity=0.151  Sum_probs=178.0

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+++|++.....  ..+..++.++.+...++  .+++++....... .....|+||||++||+|.+++.....+++
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~l~~  100 (290)
T cd05580          24 GSGKYYALKILSKAKIVKLKQVEHVLNEKRILQSI--RHPFLVNLYGSFQ-DDSNLYLVMEYVPGGELFSHLRKSGRFPE  100 (290)
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHHhC--CCCCccceeeEEE-cCCeEEEEEecCCCCCHHHHHHHcCCCCH
Confidence            3567888888765432  23445566666655553  4677766655443 34578999999999999999987778889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.++|+.+++|+    .|||++.++.+||+|||++..........+|++.|+|||.+.+..++.++|
T Consensus       101 ~~~~~~~~qil~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  180 (290)
T cd05580         101 PVARFYAAQVVLALEYLHSLDIVYRDLKPENLLLDSDGYIKITDFGFAKRVKGRTYTLCGTPEYLAPEIILSKGYGKAVD  180 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEeeCCCccccCCCCCCCCCCccccChhhhcCCCCCcccc
Confidence            9999999999999999999999988    899999999999999999987665555668899999999998888899999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||+++|+|++|..||....      .......+.   ..                                      
T Consensus       181 i~slG~il~~l~~g~~p~~~~~------~~~~~~~~~---~~--------------------------------------  213 (290)
T cd05580         181 WWALGILIYEMLAGYPPFFDDN------PIQIYEKIL---EG--------------------------------------  213 (290)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHh---cC--------------------------------------
Confidence            9999999999999999996433      111111111   10                                      


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAGP  297 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~~  297 (358)
                       ...++...+..+.++|.+||..||.+|+     +++++++||||....
T Consensus       214 -~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~~  261 (290)
T cd05580         214 -KVRFPSFFSPDAKDLIRNLLQVDLTKRLGNLKNGVNDIKNHPWFAGID  261 (290)
T ss_pred             -CccCCccCCHHHHHHHHHHccCCHHHccCcccCCHHHHHcCcccccCC
Confidence             1122333467889999999999999999     999999999998643

Serine/Threonine Kinases (STKs), cAMP-dependent protein kinase (PKA) subfamily, catalytic (c) subunit. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PKA subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This subfamily is composed of the cAMP-dependent proteins kinases, PKA and PRKX. The inactive PKA holoenzyme is a heterotetramer composed of two phosphorylated and active catalytic (C) subunits with a dimer of regulatory (R) subunits. Activation is achieved through the binding of the important second messenger cAMP to the R subunits, which leads to the dissociation of PKA into the R dimer and two active C subunits. PKA is present ubi

>KOG0607 consensus MAP kinase-interacting kinase and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=1.7e-31  Score=229.56  Aligned_cols=242  Identities=19%  Similarity=0.282  Sum_probs=183.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+|..-|+|+...- ..-.++|+-|+-..-.+ |.+|.+|+.+..-.+ .+..+|+|||-|.||+|...+.....+++.
T Consensus       100 i~t~~EYAVKiidKq-~gHsR~RvfREVe~f~~-Cqgh~nilqLiefFE-dd~~FYLVfEKm~GGplLshI~~~~~F~E~  176 (463)
T KOG0607|consen  100 IQTGKEYAVKIIDKQ-PGHSRSRVFREVETFYQ-CQGHKNILQLIEFFE-DDTRFYLVFEKMRGGPLLSHIQKRKHFNER  176 (463)
T ss_pred             eccchhhhhhhhhcC-CchHHHHHHHHHHHHHH-hcCCccHHHHHHHhc-ccceEEEEEecccCchHHHHHHHhhhccHH
Confidence            456667778877766 44456666666555544 567787777655443 456899999999999999999999999999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecC----------CCCCCCccCCCcchhH
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTH----------KQFTNDIQTRQYRCPE  161 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~----------~~~~~~~gt~~Y~aPE  161 (358)
                      ++..+++.+..++.++|+.||.||    +|||-.+..+   ||||||.++.-..          ..+.+.+|+..|||||
T Consensus       177 EAs~vvkdia~aLdFlH~kgIAHRDlKPENiLC~~pn~vsPvKiCDfDLgSg~k~~~~~spastP~L~tPvGSAEfMAPE  256 (463)
T KOG0607|consen  177 EASRVVKDIASALDFLHTKGIAHRDLKPENILCESPNKVSPVKICDFDLGSGIKLNNDCSPASTPELLTPVGSAEFMAPE  256 (463)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcccccCCccceeecCCCCcCceeeeccccccccccCCCCCCCCCccccCcccchhhcchh
Confidence            999999999999999999999999    9999876544   6999999874321          2245669999999999


Q ss_pred             HHh---CC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          162 VLL---GS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       162 ~l~---~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +..   +.  .|+.++|.||||||+|.||+|.+||.|..+.+-.                              |++...
T Consensus       257 VVd~fv~qA~~YDKrCDlwSLGvIlYImLsGYpPFvG~Cg~dCG------------------------------WdrGe~  306 (463)
T KOG0607|consen  257 VVDVFVDQATFYDKRCDLWSLGVILYIMLSGYPPFVGHCGADCG------------------------------WDRGEV  306 (463)
T ss_pred             HHhhhccccccccccccHHHHHHHHHHHHhCCCCccCccCCcCC------------------------------ccCCCc
Confidence            875   32  3899999999999999999999999877653311                              111111


Q ss_pred             chhhhhccCCcchhhHHhhhcCChh----hHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNER----DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .+...+.   .+..+..+.|.||+.    ++.++.|||..+|..|+..|.++.++++|||++..
T Consensus       307 Cr~CQ~~---LFesIQEGkYeFPdkdWahIS~eakdlisnLlvrda~~rlsa~~vlnhPw~~~~  367 (463)
T KOG0607|consen  307 CRVCQNK---LFESIQEGKYEFPDKDWAHISSEAKDLISNLLVRDAKQRLSAAQVLNHPWVQRC  367 (463)
T ss_pred             cHHHHHH---HHHHHhccCCcCChhhhHHhhHHHHHHHHHHHhccHHhhhhhhhccCCcccccc
Confidence            1110000   123444456666654    57889999999999999999999999999999874

>cd06637 STKc_TNIK Catalytic domain of the Protein Serine/Threonine Kinase, Traf2- and Nck-interacting kinase

Probab=99.97  E-value=2.7e-31  Score=237.66  Aligned_cols=225  Identities=18%  Similarity=0.193  Sum_probs=163.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCcccccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDS--   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~--   92 (358)
                      ..+..+|+|......  .....+.++....... ..|++++........     .....|+||||+.+|+|.+++...  
T Consensus        29 ~~~~~~aik~~~~~~--~~~~~~~~e~~~l~~~-~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~l~~~~~  105 (272)
T cd06637          29 KTGQLAAIKVMDVTG--DEEEEIKQEINMLKKY-SHHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG  105 (272)
T ss_pred             CCCcEEEEEEEEcCC--ccHHHHHHHHHHHHHh-cCCCCeeeEeeEEeecCCCCCCcEEEEEEEcCCCCcHHHHHHhccC
Confidence            345678888876432  2334555555444443 245666655443322     234678999999999999988753  


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..+.+..+..++.|++.++.|+|+.+++|+    +||+++.++.+||+|||++.....   ......|++.|+|||++.+
T Consensus       106 ~~l~~~~~~~~~~qi~~~l~~LH~~~ivh~dl~~~nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~g~~~y~aPE~~~~  185 (272)
T cd06637         106 NTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIAC  185 (272)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHEEECCCCCEEEccCCCceecccccccCCcccccccccCHhHhcc
Confidence            356788899999999999999999999998    999999999999999999976532   2334578999999999973


Q ss_pred             -----CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          166 -----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       166 -----~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                           ..|+.++||||+||++|+|++|..||....      .......+   .....                       
T Consensus       186 ~~~~~~~~~~~~Dv~slGv~l~el~~g~~p~~~~~------~~~~~~~~---~~~~~-----------------------  233 (272)
T cd06637         186 DENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH------PMRALFLI---PRNPA-----------------------  233 (272)
T ss_pred             ccCcCCCCCchhhHHHHHHHHHHHHhCCCCccccC------HHHHHHHH---hcCCC-----------------------
Confidence                 358889999999999999999999995322      11111000   00000                       


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                    ........+..+.+||.+||..||.+|||+.+++.||||
T Consensus       234 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~~  272 (272)
T cd06637         234 --------------PRLKSKKWSKKFQSFIESCLVKNHSQRPTTEQLMKHPFI  272 (272)
T ss_pred             --------------CCCCCCCcCHHHHHHHHHHcCCChhhCCCHHHHhhCCCC
Confidence                          000112235678999999999999999999999999998

Serine/threonine kinases (STKs), Traf2- and Nck-interacting kinase (TNIK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TNIK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to mitogen-activated protein kinase (MAPK), kinase kinase kinase 4 (MAP4K4), and MAP4K6. MAP4Ks participate in some MAPK signaling pathways by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). TNIK is an effector of Rap2, a small GTP-binding protein from the Ras family. TNIK specifically activ

>cd05606 STKc_beta_ARK Catalytic domain of the Protein Serine/Threonine Kinase, beta-adrenergic receptor kinase

Probab=99.97  E-value=2.7e-31  Score=238.78  Aligned_cols=231  Identities=18%  Similarity=0.195  Sum_probs=168.6

Q ss_pred             ccCcccccccccCccchhhh--HHhhHHHHHhhhh-ccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKNQK--KKVKKKAKKAAQG-CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|.+.........  .....+....... ...+++++....... .....|+||||+.||+|.+++.....+.
T Consensus        17 ~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~v~e~~~g~~L~~~l~~~~~l~   95 (278)
T cd05606          17 DTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFH-TPDKLSFILDLMNGGDLHYHLSQHGVFS   95 (278)
T ss_pred             cCCCEEEEEEeeccccccchhHHHHHHHHHHHHHHHhCCCCcEeeeeeeee-cCCEEEEEEecCCCCcHHHHHHhcCCCC
Confidence            45778999988765433221  1122221111111 124455555443333 3457899999999999999888777889


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCC-CCCc
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      +..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++..... .....+|+..|+|||++.+. .++.
T Consensus        96 ~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  175 (278)
T cd05606          96 EAEMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDS  175 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEEcCCCCHHHEEECCCCCEEEccCcCccccCccCCcCcCCCcCCcCcHHhcCCCCCCc
Confidence            99999999999999999999999999    999999999999999999865432 23345799999999999854 5899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|+.||.......    .......  ...                                    
T Consensus       176 ~~Di~s~G~~l~~l~~g~~p~~~~~~~~----~~~~~~~--~~~------------------------------------  213 (278)
T cd05606         176 SADWFSLGCMLFKLLRGHSPFRQHKTKD----KHEIDRM--TLT------------------------------------  213 (278)
T ss_pred             ccchHhHHHHHHHHHhCCCCCCCCCccc----hHHHHHH--hhc------------------------------------
Confidence            9999999999999999999996542111    0000000  000                                    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                         ....++...+..+.+++.+||..||.+|+     |+.++++||||...
T Consensus       214 ---~~~~~~~~~s~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~~~~~~~~  261 (278)
T cd05606         214 ---MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKEHPFFRSL  261 (278)
T ss_pred             ---cCCCCCCcCCHHHHHHHHHHhhcCHHhccCCCCCCHHHHHhCccccCC
Confidence               01123334478899999999999999999     99999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, beta-adrenergic receptor kinase (beta-ARK) group, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. The beta-ARK group is co

>KOG0668 consensus Casein kinase II, alpha subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.97  E-value=2.6e-31  Score=218.75  Aligned_cols=239  Identities=20%  Similarity=0.291  Sum_probs=182.8

Q ss_pred             ccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCcccccccccccChhhhhHHHHh
Q 045353           28 KSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKN  106 (358)
Q Consensus        28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~  106 (358)
                      |+...-+..-+||+++|+.|...+++ ++.+|+.+.+... ..+....++.||+++.+...+-..   +..-.++.++.+
T Consensus        65 K~ViKiLKPVkkkKIkREikIL~nL~-gg~NIi~L~DiV~Dp~SktpaLiFE~v~n~Dfk~ly~t---l~d~dIryY~~e  140 (338)
T KOG0668|consen   65 KCVIKILKPVKKKKIKREIKILQNLR-GGPNIIKLLDIVKDPESKTPSLIFEYVNNTDFKQLYPT---LTDYDIRYYIYE  140 (338)
T ss_pred             eEEEeeechHHHHHHHHHHHHHHhcc-CCCCeeehhhhhcCccccCchhHhhhhccccHHHHhhh---hchhhHHHHHHH
Confidence            44444566678999999999999987 6666666665554 445677899999999987775543   677889999999


Q ss_pred             hhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC-CCcchhhhhhh
Q 045353          107 TSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA  178 (358)
Q Consensus       107 ~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlG  178 (358)
                      ++.++.|+|+.||+||    .|++++.. ..++|+|+|+|.+.+..  ++-.+.+..|.-||++..-. |+.+-|+||||
T Consensus       141 lLkALdyCHS~GImHRDVKPhNvmIdh~~rkLrlIDWGLAEFYHp~~eYnVRVASRyfKGPELLVdy~~YDYSLD~WS~G  220 (338)
T KOG0668|consen  141 LLKALDYCHSMGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLG  220 (338)
T ss_pred             HHHHHhHHHhcCcccccCCcceeeechhhceeeeeecchHhhcCCCceeeeeeehhhcCCchheeechhccccHHHHHHH
Confidence            9999999999999999    89999865 67999999999877644  55567899999999999865 89999999999


Q ss_pred             HHHHhhhcCCccc-CCCCCCCCCCcHHHHHHHHHHhCCCchhh--------------hcCCCCChhhhhccCCchhhhhc
Q 045353          179 CICFELATGDVLF-DPHSGDNYDKDEDHLALMMELLGMMPRKI--------------ALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       179 vil~ell~g~~pf-~~~~~~~~~~~~~~l~~i~~~~g~~p~~~--------------~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      |++..|+..+.|| .|.+      ..+++..|.+++|+..-..              ...++.+..-|..          
T Consensus       221 cmlA~miFrkepFFhG~d------N~DQLVkIakVLGt~el~~Yl~KY~i~Ldp~~~~i~~~~~rk~w~~----------  284 (338)
T KOG0668|consen  221 CMLASMIFRKEPFFHGHD------NYDQLVKIAKVLGTDELYAYLNKYQIDLDPQFEDILGRHSRKPWSR----------  284 (338)
T ss_pred             HHHHHHHhccCcccCCCC------CHHHHHHHHHHhChHHHHHHHHHHccCCChhHhhHhhccccccHHH----------
Confidence            9999999988665 4544      6899999999999732110              0000111000000          


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ..  ..+-..-.++++.|||.++|.+|..+|+||+|++.||||..
T Consensus       285 -------Fi--~~~n~hl~~peaiDlldklLrYDHqeRlTakEam~HpyF~~  327 (338)
T KOG0668|consen  285 -------FI--NSENQHLVSPEAIDLLDKLLRYDHQERLTAKEAMAHPYFAP  327 (338)
T ss_pred             -------hC--CccccccCChHHHHHHHHHHhhccccccchHHHhcCchHHH
Confidence                   00  00111223688999999999999999999999999999974

>cd05623 STKc_MRCK_alpha Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase alpha

Probab=99.97  E-value=1.5e-31  Score=246.64  Aligned_cols=230  Identities=14%  Similarity=0.155  Sum_probs=163.2

Q ss_pred             cCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           21 SSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      ++..+|+|.+...  ........++++......  ..+.+++....... ....+|+||||+.||+|.+++.. ...+.+
T Consensus        25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~l~~  101 (332)
T cd05623          25 ADKVFAMKILNKWEMLKRAETACFREERDVLVN--GDNQWITTLHYAFQ-DENNLYLVMDYYVGGDLLTLLSKFEDRLPE  101 (332)
T ss_pred             CCCEEEEEEEeHHHHHHhhHHHHHHHHHHHHhh--CCCCCEeeEEEEEe-cCCEEEEEEeccCCCcHHHHHHHhcCCCCH
Confidence            4556788887542  122222334444433333  35555655544433 34578999999999999999876 456788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhC----
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLG----  165 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~----  165 (358)
                      ..+..++.+++.++.++|+.+++||    +|||++.++.+||+|||++......    ....+||+.|+|||++.+    
T Consensus       102 ~~~~~~~~qi~~al~~lH~~~iiHrDlkp~Nili~~~~~~kL~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  181 (332)
T cd05623         102 DMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEDG  181 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCCHHHEEECCCCCEEEeecchheecccCCcceecccccCccccCHHHHhccccC
Confidence            8899999999999999999999999    9999999999999999998653221    223579999999999973    


Q ss_pred             -CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 -SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 -~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                       ..++.++|||||||++|+|++|+.||...+      .......+   .......                         
T Consensus       182 ~~~~~~~~DvwSlGvil~ell~g~~Pf~~~~------~~~~~~~i---~~~~~~~-------------------------  227 (332)
T cd05623         182 KGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKI---MNHKERF-------------------------  227 (332)
T ss_pred             CCCCCCcCCEEeeHHHHHHHhcCCCCCCCCC------HHHHHHHH---hCCCccc-------------------------
Confidence             358899999999999999999999997543      12222221   1110000                         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                               ........++.++.+||.+||..++.+  |+|++++++||||.+.
T Consensus       228 ---------~~p~~~~~~s~~~~~li~~ll~~~~~r~~r~~~~~~~~h~~f~~~  272 (332)
T cd05623         228 ---------QFPAQVTDVSEDAKDLIRRLICSREHRLGQNGIEDFKQHPFFTGI  272 (332)
T ss_pred             ---------cCCCccccCCHHHHHHHHHHccChhhhcCCCCHHHHhCCCCcCCC
Confidence                     000011234678999999999765554  6899999999999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) alpha isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKalpha is expressed ubiquitously in many tissues. It plays a role in the regulation of peripheral actin reorganization and neurite outgrowth. It may also play a role in the transferrin iron uptake pathw

>cd05607 STKc_GRK7 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 7

Probab=99.97  E-value=1.6e-31  Score=240.10  Aligned_cols=230  Identities=17%  Similarity=0.152  Sum_probs=167.2

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      .+|..+|.|.+......  ...+.+.++.....+  +.+++++....... .....|+||||++||+|.+++...  ...
T Consensus        16 ~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~il~~--l~hp~i~~~~~~~~-~~~~~~lv~e~~~g~~L~~~~~~~~~~~~   92 (277)
T cd05607          16 NTGKMYACKKLDKKRLKKKSGEKMALLEKEILEK--VNSPFIVNLAYAFE-SKTHLCLVMSLMNGGDLKYHIYNVGERGL   92 (277)
T ss_pred             cCCcEEEEEEEcHHHhhcchhhHHHHHHHHHHHh--cCCCcEEEEEEEEe-cCCeEEEEEecCCCCCHHHHHHhccccCC
Confidence            35777888887653222  122333444444444  46677776654443 345789999999999998877532  246


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..+..++.|++.++.++|+.+++|+    +|||++.++.++|+|||++......  .....||+.|+|||++.+..++
T Consensus        93 ~~~~~~~~~~qi~~al~~lH~~~ivH~dikp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  172 (277)
T cd05607          93 EMERVIHYSAQITCGILHLHSMDIVYRDMKPENVLLDDQGNCRLSDLGLAVELKDGKTITQRAGTNGYMAPEILKEEPYS  172 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEEEccCChHhEEEcCCCCEEEeeceeeeecCCCceeeccCCCCCccCHHHHccCCCC
Confidence            777888899999999999999999998    9999999999999999999765432  2345789999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||.......  ........   ....                                  
T Consensus       173 ~~~DvwslGv~l~el~~g~~p~~~~~~~~--~~~~~~~~---~~~~----------------------------------  213 (277)
T cd05607         173 YPVDWFAMGCSIYEMVAGRTPFKDHKEKV--AKEELKRR---TLED----------------------------------  213 (277)
T ss_pred             CchhHHHHHHHHHHHHhCCCCCCCCcchh--hHHHHHHH---hhcc----------------------------------
Confidence            99999999999999999999996543110  01111110   0000                                  


Q ss_pred             hhHHhhhc-CChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCcCCC
Q 045353          250 KVLVEKYD-FNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~-~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf~~~  296 (358)
                           ... .....+.++.+||.+||+.||++|||+    ++++.||||..-
T Consensus       214 -----~~~~~~~~~~~~~~~li~~~L~~~P~~R~~~~~~~~~~~~h~~f~~~  260 (277)
T cd05607         214 -----EVKFEHQNFTEESKDICRLFLAKKPEDRLGSREKNDDPRKHEFFKTI  260 (277)
T ss_pred             -----ccccccccCCHHHHHHHHHHhccCHhhCCCCccchhhhhcChhhcCC
Confidence                 000 012346788999999999999999999    678899999864

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK7 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK7, also called iodopsin kinase, belongs to the visual gr

>cd06609 STKc_MST3_like Catalytic domain of Mammalian Ste20-like protein kinase 3-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=3.5e-31  Score=237.40  Aligned_cols=226  Identities=18%  Similarity=0.220  Sum_probs=175.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+....+......+.++.+.....  .|++++....... .+..+|+|+||+.|++|.+++... .+.+..
T Consensus        24 ~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~-~~~~~~   99 (274)
T cd06609          24 RTNQVVAIKVIDLEEAEDEIEDIQQEIQFLSQC--RSPYITKYYGSFL-KGSKLWIIMEYCGGGSCLDLLKPG-KLDETY   99 (274)
T ss_pred             CCCeEEEEEEeeccccchHHHHHHHHHHHHHHc--CCCCeeeeeEEEE-ECCeEEEEEEeeCCCcHHHHHhhc-CCCHHH
Confidence            467788999988766666666677776655553  4666666554332 346789999999999999998765 678899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.++|+|||++......   .....+++.|+|||++.+..++.++
T Consensus       100 ~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~s  179 (274)
T cd06609         100 IAFILREVLLGLEYLHEEGKIHRDIKAANILLSEEGDVKLADFGVSGQLTSTMSKRNTFVGTPFWMAPEVIKQSGYDEKA  179 (274)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEcccccceeecccccccccccCCccccChhhhccCCCCchh
Confidence            99999999999999999999988    9999999999999999999776533   3345788999999999998899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|..||....      .......+...  ..+                                   
T Consensus       180 Dv~slG~il~~l~tg~~p~~~~~------~~~~~~~~~~~--~~~-----------------------------------  216 (274)
T cd06609         180 DIWSLGITAIELAKGEPPLSDLH------PMRVLFLIPKN--NPP-----------------------------------  216 (274)
T ss_pred             hHHHHHHHHHHHHhCCCCcccCc------hHHHHHHhhhc--CCC-----------------------------------
Confidence            99999999999999999996433      11111111100  000                                   


Q ss_pred             HhhhcCChh-hHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          253 VEKYDFNER-DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       253 ~~~~~~~~~-~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          ..... .+..+.+++.+||..||++|||++++++||||...
T Consensus       217 ----~~~~~~~~~~~~~~l~~~l~~~p~~Rpt~~~il~~~~~~~~  257 (274)
T cd06609         217 ----SLEGNKFSKPFKDFVSLCLNKDPKERPSAKELLKHKFIKKA  257 (274)
T ss_pred             ----CCcccccCHHHHHHHHHHhhCChhhCcCHHHHhhChhhcCC
Confidence                01111 46678999999999999999999999999999863

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST3, MST4, STK25, Schizosaccharomyces pombe Nak1 and Sid1, Saccharomyces cerevisiae sporulation-specific protein 1 (SPS1), and related proteins. Nak1 is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Sid1 is a component in the septation initiation network (SIN)

>cd08227 PK_STRAD_alpha Pseudokinase domain of STE20-related kinase adapter protein alpha

Probab=99.97  E-value=2.4e-31  Score=244.73  Aligned_cols=266  Identities=14%  Similarity=0.126  Sum_probs=173.4

Q ss_pred             cccCcccccccccCccchhhh-HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--cccc
Q 045353           19 TESSASKENKSLYGDLTKNQK-KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~   95 (358)
                      ..+|..||+|.+......+.. ..++++......  +.|++++....... .+...|+||||+++|+|.+++..  ...+
T Consensus        22 ~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~hpniv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~l   98 (327)
T cd08227          22 KPTGEYVTVRRINLEACTNEMVTFLQGELHVSKL--FNHPNIVPYRATFI-ADNELWVVTSFMAYGSAKDLICTHFMDGM   98 (327)
T ss_pred             cccCcEEEEEEechhhccHHHHHHHHHHHHHHHh--cCCCCeeeEEEEEE-ECCEEEEEEeccCCCcHHHHHHhhccCCC
Confidence            456788999999877655443 334444443333  46788877665443 34678999999999999998854  2347


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----------CCCCCccCCCcchhH
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----------QFTNDIQTRQYRCPE  161 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----------~~~~~~gt~~Y~aPE  161 (358)
                      ++..+..++.+++.|+.|+|+.+++|+    +|||++.++.++++|||.+.....          ......++..|+|||
T Consensus        99 ~~~~~~~i~~qi~~~L~~LH~~~iiH~dlkp~Nil~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  178 (327)
T cd08227          99 SELAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMINHGQRLRVVHDFPKYSVKVLPWLSPE  178 (327)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEecCCCChhhEEEecCCcEEEcccchhhccccccccccccccccccccceecccChH
Confidence            788999999999999999999999999    999999999999999986533211          112235678899999


Q ss_pred             HHhCC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh------c
Q 045353          162 VLLGS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN------R  233 (358)
Q Consensus       162 ~l~~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~------~  233 (358)
                      ++.+.  .|+.++||||+||++|+|++|..||.....      ..  ..+....+..+...............      .
T Consensus       179 ~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (327)
T cd08227         179 VLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPA------TQ--MLLEKLNGTVPCLLDTTTIPAEELTMKPSRSGA  250 (327)
T ss_pred             HhhcccCCCCchhhHHHHHHHHHHHHHCCCCCCCcch------hH--HHHHHhcCCccccccccchhhhhcccCCcccCC
Confidence            99873  589999999999999999999999964331      11  11111222222111000000000000      0


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      .............................++.+.+||.+||++||++|||++|+++||||+.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~ell~~p~f~~  312 (327)
T cd08227         251 NSGLGESTTVSTPRPSNGESSSHPYNRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQ  312 (327)
T ss_pred             cCCCCcccccCCcCccccCCcccccccccCHHHHHHHHHHHhhCchhcCCHHHHhcChhhhh
Confidence            00000000000000000000001123345678999999999999999999999999999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) alpha subfamily, pseudokinase domain. The STRAD alpha subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hype

>cd07860 STKc_CDK2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase 2 and 3

Probab=99.97  E-value=4.1e-31  Score=238.11  Aligned_cols=251  Identities=22%  Similarity=0.261  Sum_probs=180.7

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccC
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~   96 (358)
                      .+|..+++|.+..... ......+.++.+...+.  .|++++....... .....|+||||+. ++|..++..  ...+.
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~-~~l~~~~~~~~~~~l~   98 (284)
T cd07860          23 LTGEVVALKKIRLDTETEGVPSTAIREISLLKEL--NHPNIVKLLDVIH-TENKLYLVFEFLH-QDLKKFMDASPLSGIP   98 (284)
T ss_pred             CCCCEEEEEEccccccccccchHHHHHHHHHHhc--CCCCCcchhhhcc-cCCcEEEEeeccc-cCHHHHHHhCCCCCCC
Confidence            4677889988765432 33445666666666653  5677776665543 4567899999996 577776653  34567


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      +..+..++.+++.++.|+|+.+++|+    +||+++.++.+||+|||++......   .....+++.|+|||++.+.. +
T Consensus        99 ~~~~~~~~~~i~~~l~~lh~~~i~H~~l~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  178 (284)
T cd07860          99 LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEeeccchhhcccCccccccccccccccCCeEEecCCCC
Confidence            88899999999999999999999998    8999999999999999998654322   23446788999999987755 6


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+.+      +...+..+.+..+.++...+........+......         +..
T Consensus       179 ~~~~Dv~slG~il~~l~tg~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  243 (284)
T cd07860         179 STAVDIWSLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSLPDYKPSFPK---------WAR  243 (284)
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHHhCCCChhhhhhhhHHHHHHhhccc---------ccc
Confidence            889999999999999999999997544      55666777777777665443321111111100000         000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ...    ....+..+..+.++|.+||+.||++|||+.++++||||
T Consensus       244 ~~~----~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~f  284 (284)
T cd07860         244 QDF----SKVVPPLDEDGRDLLSQMLHYDPNKRISAKAALAHPFF  284 (284)
T ss_pred             cCH----HHHcccCCHHHHHHHHHhcCCCcccCCCHHHHhcCCCC
Confidence            000    01112346778899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 2 (CDK2) and CDK3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK2/3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK2 is regulated by cyclin E or cyclin A. Upon activation by cyclin E, it phosphorylates the retinoblastoma (pRb) protein which activates E2F mediated transcription and allows cells to move into S phase. The CDK2/cyclin A complex

>cd06622 PKc_MAPKK_PBS2_like Catalytic domain of fungal PBS2-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=5.8e-31  Score=237.42  Aligned_cols=231  Identities=19%  Similarity=0.243  Sum_probs=175.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---cccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---~~~~   96 (358)
                      .+|..+++|.+...........+.++.....+  ..+++++....... .....|+||||++|++|..++...   ..++
T Consensus        24 ~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~  100 (286)
T cd06622          24 PTGVTMAMKEIRLELDESKFNQIIMELDILHK--AVSPYIVDFYGAFF-IEGAVYMCMEYMDAGSLDKLYAGGVATEGIP  100 (286)
T ss_pred             CCCcEEEEEEeecccCHHHHHHHHHHHHHHHh--cCCCcHHhhhhhee-cCCeEEEEEeecCCCCHHHHHHhccccCCCC
Confidence            36778899988766666666677777666655  35666766665443 356889999999999999887653   3678


Q ss_pred             hhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCC----
Q 045353           97 ESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGS----  166 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~----  166 (358)
                      +..+..++.+++.++.++|+ .+++|+    +|||++.++.+||+|||++..... ......+++.|+|||++.+.    
T Consensus       101 ~~~~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  180 (286)
T cd06622         101 EDVLRRITYAVVKGLKFLKEEHNIIHRDVKPTNVLVNGNGQVKLCDFGVSGNLVASLAKTNIGCQSYMAPERIKSGGPNQ  180 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCEeeCCCCHHHEEECCCCCEEEeecCCcccccCCccccCCCccCccCcchhcCCCCCc
Confidence            88999999999999999996 589888    899999999999999999965432 23445788999999998654    


Q ss_pred             --CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          167 --KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       167 --~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                        .++.++||||+||++|+|++|..||....      .......+..+....+                           
T Consensus       181 ~~~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~---------------------------  227 (286)
T cd06622         181 NPTYTVQSDVWSLGLSILEMALGRYPYPPET------YANIFAQLSAIVDGDP---------------------------  227 (286)
T ss_pred             cCCCCcccchHhHHHHHHHHHhCCCCCCCcc------hhhHHHHHHHHhhcCC---------------------------
Confidence              25889999999999999999999996432      1112222222211111                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                 ...+..++.++.+||.+||+.+|++|||+.++++||||....
T Consensus       228 -----------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~~~~~~~~~  269 (286)
T cd06622         228 -----------PTLPSGYSDDAQDFVAKCLNKIPNRRPTYAQLLEHPWLVKYK  269 (286)
T ss_pred             -----------CCCCcccCHHHHHHHHHHcccCcccCCCHHHHhcChhhhhcc
Confidence                       112334577889999999999999999999999999998643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal PBS2-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>PHA03209 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=2e-31  Score=248.01  Aligned_cols=254  Identities=17%  Similarity=0.124  Sum_probs=168.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~~   99 (358)
                      ++..||+|.....       ....++....+  +.|++++.+...... ....++||||+.| +|.+++. ....+.+.+
T Consensus        90 ~~~~valK~~~~~-------~~~~E~~~l~~--l~h~~iv~~~~~~~~-~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~  158 (357)
T PHA03209         90 QPDPVVLKIGQKG-------TTLIEAMLLQN--VNHPSVIRMKDTLVS-GAITCMVLPHYSS-DLYTYLTKRSRPLPIDQ  158 (357)
T ss_pred             CCceEEEEeCCcc-------ccHHHHHHHHh--CCCCCCcChhheEEe-CCeeEEEEEccCC-cHHHHHHhccCCCCHHH
Confidence            3456777764322       22334444444  467778877665443 4567899999965 6666554 345678889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.|++.++.|+|+.+++||    +|||++.++.+||+|||++....  .......||+.|+|||++.+..|+.++|
T Consensus       159 ~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  238 (357)
T PHA03209        159 ALIIEKQILEGLRYLHAQRIIHRDVKTENIFINDVDQVCIGDLGAAQFPVVAPAFLGLAGTVETNAPEVLARDKYNSKAD  238 (357)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEecCccccccccCcccccccccccccCCeecCCCCCCchhh
Confidence            99999999999999999999999    99999999999999999997543  2234557999999999999989999999


Q ss_pred             hhhhhHHHHhhhcCC-cccCCCCCCC---CCCcHHHHHHHHHHhCCCchhhhcCC--CCChhhhhccCCchhhhhccCCc
Q 045353          174 LWSFACICFELATGD-VLFDPHSGDN---YDKDEDHLALMMELLGMMPRKIALGG--RYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       174 iwSlGvil~ell~g~-~pf~~~~~~~---~~~~~~~l~~i~~~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ||||||++|+|+++. ++|.......   ......++..+...++..|.......  .....+.......       ..+
T Consensus       239 iwSlGvvl~ell~~~~~~f~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~  311 (357)
T PHA03209        239 IWSAGIVLFEMLAYPSTIFEDPPSTPEEYVKSCHSHLLKIISTLKVHPEEFPRDPGSRLVRGFIEYASLE-------RQP  311 (357)
T ss_pred             HHHHHHHHHHHHHcCCccccCCCCcHHHHHHHHHHHHHHHHHHhccChhhcCCCCccHHHHHHHhhcccC-------CCc
Confidence            999999999999854 4454322111   01123445555566665554332110  0000111100000       000


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ....   ........+.++.+||.+||++||.+||||.|+|+||||+.
T Consensus       312 ~~~~---~~~~~~~~~~~~~~li~~mL~~dP~~Rpta~e~l~hp~f~~  356 (357)
T PHA03209        312 YTRY---PCFQRVNLPIDGEFLVHKMLTFDAAMRPSAEEILNYPMFAQ  356 (357)
T ss_pred             cccc---HHHhccCCCchHHHHHHHHHcCCcccCcCHHHHhcCchhcc
Confidence            0000   00001123557778999999999999999999999999974

>cd05624 STKc_MRCK_beta Catalytic domain of the Protein Serine/Threonine Kinase, DMPK-related cell division control protein 42 binding kinase beta

Probab=99.97  E-value=2e-31  Score=245.55  Aligned_cols=231  Identities=13%  Similarity=0.126  Sum_probs=164.8

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccC
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      .++..+|+|.+...-  .......++.+......  ..+.+++....... .....|+||||+.||+|.+++.. ...+.
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~l~~~~~-~~~~~~lv~Ey~~gg~L~~~l~~~~~~l~  100 (331)
T cd05624          24 HTERIYAMKILNKWEMLKRAETACFREERNVLVN--GDCQWITTLHYAFQ-DENYLYLVMDYYVGGDLLTLLSKFEDRLP  100 (331)
T ss_pred             CCCCEEEEEEEeHHHHHhhHHHHHHHHHHHHHHh--CCCCCEeeEEEEEE-cCCEEEEEEeCCCCCcHHHHHHHhcCCCC
Confidence            456678999886532  12222233333333332  35556665554433 34678999999999999999876 45678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhC---
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLG---  165 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~---  165 (358)
                      +..+..++.+++.++.++|..+++||    +|||++.++.+||+|||+|......    ....+||+.|+|||++.+   
T Consensus       101 ~~~~~~~~~qi~~~L~~lH~~~iiHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  180 (331)
T cd05624         101 EDMARFYIAEMVLAIHSIHQLHYVHRDIKPDNVLLDMNGHIRLADFGSCLKMNQDGTVQSSVAVGTPDYISPEILQAMED  180 (331)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeeccCchHHEEEcCCCCEEEEeccceeeccCCCceeeccccCCcccCCHHHHhcccc
Confidence            88899999999999999999999999    9999999999999999999765432    123479999999999986   


Q ss_pred             --CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          166 --SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       166 --~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                        ..++.++||||+||++|+|++|+.||.+.+      ..+....+.......+                          
T Consensus       181 ~~~~~~~~~DiwSlGvil~ell~g~~Pf~~~~------~~~~~~~i~~~~~~~~--------------------------  228 (331)
T cd05624         181 GMGKYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHEERFQ--------------------------  228 (331)
T ss_pred             CCCCCCCcccEEeeehhhhhhhhCCCCccCCC------HHHHHHHHHcCCCccc--------------------------
Confidence              457889999999999999999999996443      1222222111000000                          


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                                 ........+..+.+||.+||..++.+  |++++++++||||...
T Consensus       229 -----------~p~~~~~~~~~~~~li~~ll~~~~~~~~~~~~~~~~~h~~f~~~  272 (331)
T cd05624         229 -----------FPSHITDVSEEAKDLIQRLICSRERRLGQNGIEDFKKHAFFEGI  272 (331)
T ss_pred             -----------CCCccccCCHHHHHHHHHHccCchhhcCCCCHHHHhcCCCcCCC
Confidence                       00001224678999999999976654  5699999999999863

Serine/Threonine Kinases (STKs), DMPK-like subfamily, DMPK-related cell division control protein 42 (Cdc42) binding kinase (MRCK) beta isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The DMPK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MRCK is activated via interaction with the small GTPase Cdc42. MRCK/Cdc42 signaling mediates myosin-dependent cell motility. MRCKbeta is expressed ubiquitously in many tissues.

>cd05572 STKc_cGK_PKG Catalytic domain of the Protein Serine/Threonine Kinase, cGMP-dependent protein kinase

Probab=99.97  E-value=7.7e-31  Score=233.55  Aligned_cols=228  Identities=19%  Similarity=0.186  Sum_probs=176.4

Q ss_pred             cCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+++|+.......  ...+.+.++.+...+.  .+++++...... ......|+||||++||+|.+++.....+.+.
T Consensus        17 ~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~l~~~   93 (262)
T cd05572          17 KNRTFALKCVKKRHIVETGQQEHIFSEKEILEEC--NHPFIVKLYRTF-KDKKYIYMLMEYCLGGELWTILRDRGLFDEY   93 (262)
T ss_pred             CCcEEEEEEEehhcchhhhHHHHHHHHHHHHHhC--CCCCEeeeeeeE-EcCCccEEEEecCCCCcHHHHHhhcCCCCHH
Confidence            4778899988764433  4556777777665553  566666655543 3456789999999999999999877778889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcch
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      .+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......  .....|++.|++||.+.+..++.++
T Consensus        94 ~~~~~~~~i~~~l~~lH~~~~~h~dl~~~nilv~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~  173 (262)
T cd05572          94 TARFYIACVVLAFEYLHNRGIIYRDLKPENLLLDSNGYVKLVDFGFAKKLKSGQKTWTFCGTPEYVAPEIILNKGYDFSV  173 (262)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcccCCCCHHHEEEcCCCCEEEeeCCcccccCcccccccccCCcCccChhHhcCCCCCChh
Confidence            999999999999999999999998    9999999999999999999765442  2345789999999999888899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+||+||++|+|++|..||......    .......+..  +.                                     
T Consensus       174 Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~--~~-------------------------------------  210 (262)
T cd05572         174 DYWSLGILLYELLTGRPPFGEDDED----PMEIYNDILK--GN-------------------------------------  210 (262)
T ss_pred             hhhhhHHHHHHHHhCCCCcCCCCCC----HHHHHHHHhc--cC-------------------------------------
Confidence            9999999999999999999654320    1111111110  00                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~  295 (358)
                       ....++...+..+.++|.+||..||++|+|     ++|+++||||++
T Consensus       211 -~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~  257 (262)
T cd05572         211 -GKLEFPNYIDKAAKDLIKQLLRRNPEERLGNLKGGIKDIKKHKWFNG  257 (262)
T ss_pred             -CCCCCCcccCHHHHHHHHHHccCChhhCcCCcccCHHHHhcChhhhC
Confidence             011223333678999999999999999999     999999999985

Serine/Threonine Kinases (STKs), cGMP-dependent protein kinase (cGK or PKG) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The cGK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Mammals have two cGK isoforms from different genes, cGKI and cGKII. cGKI exists as two splice variants, cGKI-alpha and cGKI-beta. cGK consists of an N-terminal regulatory domain containing a dimerization and an autoinhibitory pseudosubstrate region, two cGMP-binding domains, and a C-terminal catalytic domain. Binding of cGMP to both binding sites releases the inhibition of the catalytic center by the pseudosubstrate region, allowi

>cd06619 PKc_MKK5 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 5

Probab=99.97  E-value=4.2e-31  Score=237.66  Aligned_cols=231  Identities=17%  Similarity=0.164  Sum_probs=171.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .++..+|+|......+.....++.++.+...++  .+++++........ ....++||||++||+|..+.    .+.+..
T Consensus        24 ~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~l~~~~----~~~~~~   96 (279)
T cd06619          24 LTRRILAVKVIPLDITVELQKQIMSELEILYKC--DSPYIIGFYGAFFV-ENRISICTEFMDGGSLDVYR----KIPEHV   96 (279)
T ss_pred             CCCcEEEEEEEecCCChHHHHHHHHHHHHHHhC--CCCCeeeEEEEEEE-CCEEEEEEecCCCCChHHhh----cCCHHH
Confidence            466788999887766666666777777766553  56666666554433 45678999999999987542    356778


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..... .....+||..|+|||++.+..++.++|+
T Consensus        97 ~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv  176 (279)
T cd06619          97 LGRIAVAVVKGLTYLWSLKILHRDVKPSNMLVNTRGQVKLCDFGVSTQLVNSIAKTYVGTNAYMAPERISGEQYGIHSDV  176 (279)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeeCCCCHHHEEECCCCCEEEeeCCcceecccccccCCCCChhhcCceeecCCCCCCcchH
Confidence            88999999999999999999998    999999999999999999976543 3345689999999999999889999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      |||||++|+|++|..||...........  .......+....+.                                    
T Consensus       177 wslG~~l~~l~~g~~pf~~~~~~~~~~~--~~~~~~~~~~~~~~------------------------------------  218 (279)
T cd06619         177 WSLGISFMELALGRFPYPQIQKNQGSLM--PLQLLQCIVDEDPP------------------------------------  218 (279)
T ss_pred             HHHHHHHHHHHhCCCCchhhcccccccc--hHHHHHHHhccCCC------------------------------------
Confidence            9999999999999999964321110000  00000000000000                                    


Q ss_pred             hhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          255 KYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       .......++++.+||.+||+.||++||+++++++||||...
T Consensus       219 -~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~eil~~~~~~~~  259 (279)
T cd06619         219 -VLPVGQFSEKFVHFITQCMRKQPKERPAPENLMDHPFIVQY  259 (279)
T ss_pred             -CCCCCcCCHHHHHHHHHHhhCChhhCCCHHHHhcCcccccc
Confidence             00012235678999999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase 5 (MKK5) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK5, also referred to as MEK5, is a dual-specificity PK that p

>cd07851 STKc_p38 Catalytic domain of the Serine/Threonine Kinase, p38 Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.4e-30  Score=239.61  Aligned_cols=257  Identities=23%  Similarity=0.292  Sum_probs=183.6

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCC-----CCCCCCCcccccCCCCCcccccccccc
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-----PSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      ++..+++|.+..... ....+.+.++.....+.  .+++++.......     ......|+||||+ |++|.+++.. ..
T Consensus        39 ~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~-~~  114 (343)
T cd07851          39 TGRKVAIKKLSRPFQSAIHAKRTYRELRLLKHM--DHENVIGLLDVFTPASSLEDFQDVYLVTHLM-GADLNNIVKC-QK  114 (343)
T ss_pred             CCcEEEEEecccccchhhHHHHHHHHHHHHHhc--cCCCHHHHHHHhhccccccccccEEEEEecC-CCCHHHHHhc-CC
Confidence            456788888776433 23335555665555443  4555544433222     1224589999999 6689888765 35


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCC-CCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-KYS  169 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~-~~~  169 (358)
                      +++..+..++.+++.++.++|+.+++|+    +||++++++.+||+|||++...........++..|+|||++.+. .++
T Consensus       115 l~~~~~~~~~~ql~~aL~~LH~~gi~H~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  194 (343)
T cd07851         115 LSDDHIQFLVYQILRGLKYIHSAGIIHRDLKPSNIAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYN  194 (343)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCCEEEccccccccccccccCCcccccccCHHHHhCCCCCC
Confidence            7888999999999999999999999999    99999999999999999998776656667889999999999764 578


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|+.||.+..      ....+..+...++.+++.+.........  .     ............
T Consensus       195 ~~~DvwslGv~l~elltg~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~~~~~  261 (343)
T cd07851         195 QTVDIWSVGCIMAELLTGKTLFPGSD------HIDQLKRIMNLVGTPDEELLQKISSESA--R-----NYIQSLPQMPKK  261 (343)
T ss_pred             chHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHhcCCCCHHHHhhccchhH--H-----HHHHhccccCCC
Confidence            99999999999999999999997544      4566777778788777665433221100  0     000000000000


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ..    .......+..+.+||.+||..||++|||+.++++||||.....
T Consensus       262 ~~----~~~~~~~s~~l~dli~~~l~~~P~~Rpt~~ell~h~~~~~~~~  306 (343)
T cd07851         262 DF----KEVFSGANPLAIDLLEKMLVLDPDKRITAAEALAHPYLAEYHD  306 (343)
T ss_pred             CH----HHHhccCCHHHHHHHHHhCCCChhhCCCHHHHhcCCCccccCC
Confidence            00    0011223678999999999999999999999999999986533

Serine/Threonine Kinases (STKs), p38 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They function in the regulation of the cell cycle, cell development, cell differentiation, senescence, tumorigenesis, apoptosis, pain development and pain progression, and immune responses. p38 kinases are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK

>cd06605 PKc_MAPKK Catalytic domain of the dual-specificity Protein Kinase, Mitogen-Activated Protein Kinase Kinase

Probab=99.97  E-value=5.6e-31  Score=234.69  Aligned_cols=230  Identities=19%  Similarity=0.230  Sum_probs=176.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      ++..+++|.+..........++.++.+...+.  .+++++........ ....|+||||+.|++|.+++... ..+.+..
T Consensus        25 ~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~--~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  101 (265)
T cd06605          25 TGKIMAVKTIRLEINEAIQKQILRELDILHKC--NSPYIVGFYGAFYN-NGDISICMEYMDGGSLDKILKEVQGRIPERI  101 (265)
T ss_pred             CCcEEEEEEEecccChHHHHHHHHHHHHHHHC--CCCchhhhheeeec-CCEEEEEEEecCCCcHHHHHHHccCCCCHHH
Confidence            56778999988877666667777777666653  36666665544333 37789999999999999998765 6678888


Q ss_pred             hhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.++|+ .+++|+    +||++++++.++|+|||.+...... .....++..|+|||.+.+..++.++|
T Consensus       102 ~~~~~~~l~~~l~~lH~~~~i~H~dl~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  181 (265)
T cd06605         102 LGKIAVAVLKGLTYLHEKHKIIHRDVKPSNILVNSRGQIKLCDFGVSGQLVNSLAKTFVGTSSYMAPERIQGNDYSVKSD  181 (265)
T ss_pred             HHHHHHHHHHHHHHHcCCCCeecCCCCHHHEEECCCCCEEEeecccchhhHHHHhhcccCChhccCHHHHcCCCCCchhh
Confidence            89999999999999999 999988    9999999999999999998654322 12267889999999999988999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||+||++|+|++|..||......    .......+..+....+.                                   
T Consensus       182 v~slG~~l~~l~~g~~p~~~~~~~----~~~~~~~~~~~~~~~~~-----------------------------------  222 (265)
T cd06605         182 IWSLGLSLIELATGRFPYPPENDP----PDGIFELLQYIVNEPPP-----------------------------------  222 (265)
T ss_pred             HHHHHHHHHHHHhCCCCCCccccc----cccHHHHHHHHhcCCCC-----------------------------------
Confidence            999999999999999999644211    01111112111111110                                   


Q ss_pred             hhhcCChh-hHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          254 EKYDFNER-DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       254 ~~~~~~~~-~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                         ..+.. .+..+.+||.+||..||++|||+.+++.||||+.
T Consensus       223 ---~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~~~  262 (265)
T cd06605         223 ---RLPSGKFSPDFQDFVNLCLIKDPRERPSYKELLEHPFIKK  262 (265)
T ss_pred             ---CCChhhcCHHHHHHHHHHcCCCchhCcCHHHHhhCchhhc
Confidence               11111 4678899999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK or MAP2K), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK or MAP3K). MAPKKs are dual-specificity

>cd07837 STKc_CdkB_plant Catalytic domain of the Serine/Threonine Kinase, Plant B-type Cyclin-Dependent protein Kinase

Probab=99.97  E-value=1.1e-30  Score=236.54  Aligned_cols=253  Identities=21%  Similarity=0.278  Sum_probs=175.6

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCC----CCCCCcccccCCCCCcccccccc--
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPS----SPDNFSVDTIPNGVSVEERQNDS--   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iv~e~~~gg~L~~~~~~~--   92 (358)
                      .+|..+++|......... ....+.++....... .++++++.........    ....|+||||+++ +|.+++...  
T Consensus        24 ~~~~~v~lK~~~~~~~~~~~~~~~~~E~~~l~~l-~~~~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~  101 (295)
T cd07837          24 NTGKLVALKKTRLEMDEEGIPPTALREISLLQML-SESIYIVRLLDVEHVEEKNGKPSLYLVFEYLDS-DLKKFMDSNGR  101 (295)
T ss_pred             CCCcEEEEEeehhhccccCCchHHHHHHHHHHHc-cCCCCccceeeeEeecCCCCCceEEEEeeccCc-CHHHHHHHhcc
Confidence            356788999876654332 334555665555543 2445555555443322    2347999999997 677766532  


Q ss_pred             ---cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCC---CCCCCccCCCcchhH
Q 045353           93 ---VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPE  161 (358)
Q Consensus        93 ---~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE  161 (358)
                         ..+++..+..++.+++.++.|+|+.+++|+    +||+++. ++.+||+|||++.....   ......+++.|+|||
T Consensus       102 ~~~~~~~~~~~~~~~~qi~~~L~~LH~~~i~H~dl~~~nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE  181 (295)
T cd07837         102 GPGRPLPAKTIKSFMYQLLKGVAHCHKHGVMHRDLKPQNLLVDKQKGLLKIADLGLGRAFSIPVKSYTHEIVTLWYRAPE  181 (295)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEecCCCeEEEeecccceecCCCccccCCcccccCCCChH
Confidence               246788999999999999999999999999    9999998 89999999999975432   233446788999999


Q ss_pred             HHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+. .++.++|||||||++|+|++|..||.+.+      +...+..+...++.++...+........+..        
T Consensus       182 ~~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------  247 (295)
T cd07837         182 VLLGSTHYSTPVDIWSVGCIFAEMSRKQPLFPGDS------ELQQLLHIFKLLGTPTEQVWPGVSKLRDWHE--------  247 (295)
T ss_pred             HhhCCCCCCchHHHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHHHhCCCChhhCcchhhccchhh--------
Confidence            98764 47999999999999999999999997644      4555666666666555443321111100000        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                        ...+.....    ....+..+..+.+||.+||..||.+|||++|+|.||||+
T Consensus       248 --~~~~~~~~~----~~~~~~~~~~~~~~i~~~l~~~P~~R~~~~eil~~~~~~  295 (295)
T cd07837         248 --FPQWKPQDL----SRAVPDLSPEGLDLLQKMLRYDPAKRISAKAALTHPYFD  295 (295)
T ss_pred             --cCcccchhH----HHhccccCHHHHHHHHHHccCChhhcCCHHHHhcCCCcC
Confidence              000000000    011123567889999999999999999999999999995

Serine/Threonine Kinases (STKs), Plant B-type Cyclin-Dependent protein Kinase (CdkB) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CdkB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. The plant-specific B-type CDKs are expressed from the late S to the M phase of the cell cycle. They are characterized by the cyclin binding motif PPT[A/T]LRE. They play a role in controlling mitosis and integrating developm

>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=2e-31  Score=245.17  Aligned_cols=225  Identities=19%  Similarity=0.224  Sum_probs=173.2

Q ss_pred             cCcccccccc--cCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           21 SSASKENKSL--YGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      |..-||||-+  +++-+..+...|-++-+-..++.  |++.+. +...-..+...|+|||||-| |..|+++ ..-.+-+
T Consensus        50 n~evVAIKKMsySGKQs~EKWqDIlKEVrFL~~l~--HPntie-YkgCyLre~TaWLVMEYClG-SAsDlleVhkKplqE  125 (948)
T KOG0577|consen   50 NSEVVAIKKMSYSGKQSNEKWQDILKEVRFLRQLR--HPNTIE-YKGCYLREHTAWLVMEYCLG-SASDLLEVHKKPLQE  125 (948)
T ss_pred             ccceeeeeeccccccccHHHHHHHHHHHHHHHhcc--CCCccc-ccceeeccchHHHHHHHHhc-cHHHHHHHHhccchH
Confidence            3445676654  46667777888988888888754  444443 33344556788999999986 4455554 3445788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC---CCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG---SKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~---~~~~~  170 (358)
                      .+|+.+.++.+.|+.|+|+++.|||    .|||+++.|.|||+|||.|..... .++.+|||+||||||++.   +.|+-
T Consensus       126 vEIAAi~~gaL~gLaYLHS~~~IHRDiKAGNILLse~g~VKLaDFGSAsi~~P-AnsFvGTPywMAPEVILAMDEGqYdg  204 (948)
T KOG0577|consen  126 VEIAAITHGALQGLAYLHSHNRIHRDIKAGNILLSEPGLVKLADFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYDG  204 (948)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHhhhccccceEecCCCeeeeccccchhhcCc-hhcccCCccccchhHheeccccccCC
Confidence            9999999999999999999999999    899999999999999999976643 468899999999999984   45999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||||+++.++...++|+...         ..+..++.+-..-++..                              
T Consensus       205 kvDvWSLGITCIELAERkPPlFnM---------NAMSALYHIAQNesPtL------------------------------  245 (948)
T KOG0577|consen  205 KVDVWSLGITCIELAERKPPLFNM---------NAMSALYHIAQNESPTL------------------------------  245 (948)
T ss_pred             ccceeeccchhhhhhhcCCCccCc---------hHHHHHHHHHhcCCCCC------------------------------
Confidence            999999999999999999887422         23333333322211110                              


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             .....+..|..|+..||+.-|.+|||.+++|.|+|+...
T Consensus       246 -------qs~eWS~~F~~Fvd~CLqKipqeRptse~ll~H~fv~R~  284 (948)
T KOG0577|consen  246 -------QSNEWSDYFRNFVDSCLQKIPQERPTSEELLKHRFVLRE  284 (948)
T ss_pred             -------CCchhHHHHHHHHHHHHhhCcccCCcHHHHhhcchhccC
Confidence                   012337889999999999999999999999999999854

>cd06651 STKc_MEKK3 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 3

Probab=99.97  E-value=6.3e-31  Score=234.75  Aligned_cols=226  Identities=18%  Similarity=0.212  Sum_probs=167.8

Q ss_pred             ccCcccccccccCcc----chhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDL----TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+++|.+....    +..+...++++.....+  +.|++++....... .....++++|||++|++|.+++.....
T Consensus        25 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~~~~~~~~l~~e~~~~~~L~~~l~~~~~  102 (266)
T cd06651          25 DTGRELAAKQVQFDPESPETSKEVSALECEIQLLKN--LQHERIVQYYGCLRDRAEKTLTIFMEYMPGGSVKDQLKAYGA  102 (266)
T ss_pred             CCCcEEEEEEeecCcCCchhHHHHHHHHHHHHHHHH--cCCCCeeeEEEEEEcCCCCEEEEEEeCCCCCcHHHHHHHcCC
Confidence            456778888775432    22334556666665555  35666666554432 234567899999999999999887666


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.....++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......      .....++..|+|||.+.
T Consensus       103 l~~~~~~~~~~qi~~~l~~LH~~~i~H~~l~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (266)
T cd06651         103 LTESVTRKYTRQILEGMSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQTICMSGTGIRSVTGTPYWMSPEVIS  182 (266)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEccCCCccccccccccCCccccCCccccccCHHHhC
Confidence            7888889999999999999999999999    9999999999999999998654321      22346888999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++||||+||++|+|++|+.||....         ....+........                           
T Consensus       183 ~~~~~~~~Dv~slG~i~~el~~g~~pf~~~~---------~~~~~~~~~~~~~---------------------------  226 (266)
T cd06651         183 GEGYGRKADVWSLGCTVVEMLTEKPPWAEYE---------AMAAIFKIATQPT---------------------------  226 (266)
T ss_pred             CCCCCchhhhHHHHHHHHHHHHCCCCccccc---------hHHHHHHHhcCCC---------------------------
Confidence            8889999999999999999999999996322         1111111111000                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                ...++...++.+.+|| +||..+|++|||++|+++||||+
T Consensus       227 ----------~~~~~~~~~~~~~~li-~~~~~~p~~Rp~~~eil~hp~~~  265 (266)
T cd06651         227 ----------NPQLPSHISEHARDFL-GCIFVEARHRPSAEELLRHPFAQ  265 (266)
T ss_pred             ----------CCCCchhcCHHHHHHH-HHhcCChhhCcCHHHHhcCcccc
Confidence                      0112233456778888 57778999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK3 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK3 plays an essential role in embryonic angiogenesis and early heart development

>cd07847 STKc_CDKL1_4 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 1 and 4

Probab=99.97  E-value=1.2e-30  Score=235.18  Aligned_cols=253  Identities=22%  Similarity=0.231  Sum_probs=177.5

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      +|..+++|.+..... ....+.+.++.+...+  ..+.+++....... .....++||||+++++|..+......+++.+
T Consensus        25 ~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~  101 (286)
T cd07847          25 TGQIVAIKKFVESEDDPVIKKIALREIRMLKQ--LKHPNLVNLIEVFR-RKRKLHLVFEYCDHTVLNELEKNPRGVPEHL  101 (286)
T ss_pred             CCcEEEEEEEeecccCccccHHHHHHHHHHHh--CCCCCEeeeeeEEe-eCCEEEEEEeccCccHHHHHHhCCCCCCHHH
Confidence            577888887764322 2233445566665555  34566666554433 3457899999999999998877666788999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....++..|+|||++.+. .++.+
T Consensus       102 ~~~~~~ql~~~l~~LH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  181 (286)
T cd07847         102 IKKIIWQTLQAVNFCHKHNCIHRDVKPENILITKQGQIKLCDFGFARILTGPGDDYTDYVATRWYRAPELLVGDTQYGPP  181 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCceecCCChhhEEEcCCCcEEECccccceecCCCcccccCcccccccCCHHHHhCCCCcCch
Confidence            99999999999999999999998    9999999999999999999765432   2344678999999999874 47899


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|.+||.+.+      ..+.+..+...++........... ...++.......    .  ..... 
T Consensus       182 ~Di~slG~i~~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----~--~~~~~-  247 (286)
T cd07847         182 VDVWAIGCVFAELLTGQPLWPGKS------DVDQLYLIRKTLGDLIPRHQQIFS-TNQFFKGLSIPE----P--ETREP-  247 (286)
T ss_pred             hhhHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChHHhhhcc-cccccccccCCC----c--ccccC-
Confidence            999999999999999999997654      345555555555543322111000 000000000000    0  00000 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                         ........+..+.+||.+||+.||++|||+.|++.||||
T Consensus       248 ---~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~~~~f  286 (286)
T cd07847         248 ---LESKFPNISSPALSFLKGCLQMDPTERLSCEELLEHPYF  286 (286)
T ss_pred             ---HHHHhccCCHHHHHHHHHHhcCCccccCCHHHHhcCCCC
Confidence               000112346788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 1 (CDKL1) and CDKL4 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL1 and CDKL4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL1, also called p42 KKIALRE, is a glial protein that is upregulated in gliosis. It is present in neuroblastoma and A431 human carcinoma cells, and may be implicated in neoplastic transformation. The functio

>cd07849 STKc_ERK1_2_like Catalytic domain of Extracellular signal-Regulated Kinase 1 and 2-like Serine/Threonine Kinases

Probab=99.97  E-value=2.2e-30  Score=239.26  Aligned_cols=257  Identities=21%  Similarity=0.262  Sum_probs=178.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC----CCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..|++|.+...-......++.++.......  .+.+++........    .....|+||||+.+ +|.+++.. ..+
T Consensus        28 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~-~~l  103 (336)
T cd07849          28 PTGVKVAIKKISPFEHQTFCQRTLREIKILRRF--KHENIIGILDIIRPPSFESFNDVYIVQELMET-DLYKLIKT-QHL  103 (336)
T ss_pred             CCCCeEEEEEecccccchhHHHHHHHHHHHHhC--CCCCcCchhheeecccccccceEEEEehhccc-CHHHHHhc-CCC
Confidence            467788999886433333334455555544443  46666666554322    22457999999975 67666643 357


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~  165 (358)
                      .+..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||++......      ....+||+.|+|||++.+
T Consensus       104 ~~~~~~~i~~ql~~aL~~LH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  183 (336)
T cd07849         104 SNDHIQYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTNCDLKICDFGLARIADPEHDHTGFLTEYVATRWYRAPEIMLN  183 (336)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEECCCCCEEECcccceeeccccccccCCcCCcCcCCCccChHHhhC
Confidence            788899999999999999999999999    9999999999999999999664321      123478999999999876


Q ss_pred             C-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC--hhhhhccCCchhhhh
Q 045353          166 S-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS--RDFFNRHGDLRHIRR  242 (358)
Q Consensus       166 ~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~--~~~~~~~~~~~~~~~  242 (358)
                      . .++.++||||+||++|+|++|++||.+..      ....+..+...++.++.+........  ..+...         
T Consensus       184 ~~~~~~~~DvwslGvil~el~~G~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  248 (336)
T cd07849         184 SKGYTKAIDIWSVGCILAEMLSNRPLFPGKD------YLHQLNLILGVLGTPSQEDLNCIISLRARNYIKS---------  248 (336)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHHhhchhhhhHHhh---------
Confidence            4 58999999999999999999999997543      45667777777776655433211100  000000         


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      ....+...    .....+..+..+.+||.+||+.||++|||+.|+++||||......
T Consensus       249 ~~~~~~~~----~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~e~l~hp~~~~~~~~  301 (336)
T cd07849         249 LPFKPKVP----WNKLFPNADPKALDLLDKMLTFNPHKRITVEEALAHPYLEQYHDP  301 (336)
T ss_pred             cCcCCccc----HHHHhcccCcHHHHHHHHHcCCChhhCcCHHHHhcCccccccCCC
Confidence            00000000    000112236778999999999999999999999999999875443

Serine/Threonine Kinases (STKs), Extracellular signal-regulated kinases 1 and 2 (ERK1/2) and Fus3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This ERK1/2-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the mitogen-activated protein kinases (MAPKs) ERK1, ERK2, baker's yeast Fus3, and similar proteins. MAPK pathways are important mediators of cellular responses to extracellular signals. ERK1/2 activation is preferentially by mitogenic factors, differentiation stimuli, and cytokines, through a kinase cascade involving the MAPK kinases MEK1/2 and a MAPK kinase

>PHA03211 serine/threonine kinase US3; Provisional

Probab=99.97  E-value=5.9e-31  Score=250.74  Aligned_cols=254  Identities=16%  Similarity=0.141  Sum_probs=167.1

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~  100 (358)
                      +..|++|...       ...+.++.+...+  +.|.+++.+..... ..+..++|||++. |+|.+++.. ...+++.++
T Consensus       194 ~~~vavK~~~-------~~~~~~E~~iL~~--L~HpnIv~l~~~~~-~~~~~~lv~e~~~-~~L~~~l~~~~~~l~~~~~  262 (461)
T PHA03211        194 PQRVVVKAGW-------YASSVHEARLLRR--LSHPAVLALLDVRV-VGGLTCLVLPKYR-SDLYTYLGARLRPLGLAQV  262 (461)
T ss_pred             CCEEEEeccc-------ccCHHHHHHHHHH--CCCCCCCcEEEEEE-ECCEEEEEEEccC-CCHHHHHHhcCCCCCHHHH
Confidence            4456777422       1223455555544  46777877766543 2456789999996 567666654 345788999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ..++.|++.++.|+|+.+++||    +|||++.++.+||+|||+|+.....     ....+||+.|+|||++.+..++.+
T Consensus       263 ~~i~~qi~~aL~yLH~~gIvHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~~  342 (461)
T PHA03211        263 TAVARQLLSAIDYIHGEGIIHRDIKTENVLVNGPEDICLGDFGAACFARGSWSTPFHYGIAGTVDTNAPEVLAGDPYTPS  342 (461)
T ss_pred             HHHHHHHHHHHHHHHHCCEEECcCCHHHEEECCCCCEEEcccCCceecccccccccccccCCCcCCcCHHHHcCCCCCch
Confidence            9999999999999999999999    9999999999999999999765322     123479999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCC-CCCCCCcHHHHHHHHHHhCCCchhhhcCC--CCChhhhhccCCchhhhhccCCcc
Q 045353          172 ADLWSFACICFELATGDVLFDPHS-GDNYDKDEDHLALMMELLGMMPRKIALGG--RYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~-~~~~~~~~~~l~~i~~~~g~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +|||||||++|+|++|..++.+.. .........++..+.+..+..........  .....+....... .   ...+  
T Consensus       343 sDvwSlGviL~El~~g~~~lf~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~--  416 (461)
T PHA03211        343 VDIWSAGLVIFEAAVHTASLFSASRGDERRPYDAQILRIIRQAQVHVDEFPQHAGSRLVSQYRHRAARN-R---RPAY--  416 (461)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccCCcccccCCcHHHHHHHHHhhccccccCCCCcchHHHHHHHhhhhcc-c---CCcc--
Confidence            999999999999999876543322 22222234455555554443221110000  0000000000000 0   0000  


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ..   ..+......+..+.+||.+||++||.+|||+.|+|+||||+.
T Consensus       417 ~~---~~~~~~~~~~~~~~dli~~mL~~DP~~RPsa~elL~hp~f~~  460 (461)
T PHA03211        417 TR---PAWTRYYKLDLDVEYLVCRALTFDGARRPSAAELLRLPLFQS  460 (461)
T ss_pred             CC---cchhhhccccchHHHHHHHHcccChhhCcCHHHHhhCcccCC
Confidence            00   000001123567889999999999999999999999999975

>cd07880 STKc_p38gamma_MAPK12 Catalytic domain of the Serine/Threonine Kinase, p38gamma Mitogen-Activated Protein Kinase

Probab=99.97  E-value=2.4e-30  Score=239.56  Aligned_cols=258  Identities=24%  Similarity=0.289  Sum_probs=183.0

Q ss_pred             cccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..+|+|.+...... ....++.++.+....  +.|++++..........     ...++||||+ |++|.+++.. 
T Consensus        37 ~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~~-  112 (343)
T cd07880          37 RRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKH--MKHENVIGLLDVFTPDLSLDRFHDFYLVMPFM-GTDLGKLMKH-  112 (343)
T ss_pred             CCCCcEEEEEEecccccchHHHHHHHHHHHHHHh--cCCCCccceeeeecCCccccccceEEEEEecC-CCCHHHHHhc-
Confidence            346778899988654432 234456666665555  35666665554433221     3458999999 7788887754 


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCC-C
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      ..+++..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||++...........+++.|+|||++.+. .
T Consensus       113 ~~l~~~~~~~i~~qi~~al~~LH~~gi~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  192 (343)
T cd07880         113 EKLSEDRIQFLVYQMLKGLKYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQTDSEMTGYVVTRWYRAPEVILNWMH  192 (343)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccccccccCccccccCCcccCHHHHhCCCC
Confidence            357788999999999999999999999999    99999999999999999998776655566789999999999874 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|+||+||++|++++|.+||.+..      .......+....+..+..+.........       .......... 
T Consensus       193 ~~~~~Di~slG~ll~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-  258 (343)
T cd07880         193 YTQTVDIWSVGCIMAEMLTGKPLFKGHD------HLDQLMEIMKVTGTPSKEFVQKLQSEDA-------KNYVKKLPRF-  258 (343)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhhcchhH-------HHHHHhcccc-
Confidence            8899999999999999999999997543      3455666666666655543322111100       0000000000 


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                       ...  .........+..+.++|.+||+.||++|||+.+++.||||+...
T Consensus       259 -~~~--~~~~~~~~~~~~~~~li~~~l~~dP~~R~t~~~~l~~~~~~~~~  305 (343)
T cd07880         259 -RKK--DFRSLLPNANPLAVNVLEKMLVLDAESRITAAEALAHPYFEEFH  305 (343)
T ss_pred             -Ccc--hHHHhccCCChHHHHHHHHHcCCChhhCCCHHHHhcCccHhhhc
Confidence             000  00112234567899999999999999999999999999998753

Serine/Threonine Kinases (STKs), p38gamma subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38gamma subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38gamma, also called MAPK12

>cd07858 STKc_TEY_MAPK_plant Catalytic domain of the Serine/Threonine Kinases, TEY Mitogen-Activated Protein Kinases from Plants

Probab=99.97  E-value=1.6e-30  Score=240.23  Aligned_cols=261  Identities=25%  Similarity=0.300  Sum_probs=185.1

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC----CCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS----SPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+++|.+..... ....+++.++......  ..+.+++...+.....    ....|+||||+. ++|.+++.....
T Consensus        28 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~ni~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~  104 (337)
T cd07858          28 ETNEKVAIKKIANAFDNRIDAKRTLREIKLLRH--LDHENVIAIKDIMPPPHREAFNDVYIVYELMD-TDLHQIIRSSQT  104 (337)
T ss_pred             CCCCeEEEEEecccccccchhHHHHHHHHHHHh--cCCCCccchHHheecccccccCcEEEEEeCCC-CCHHHHHhcCCC
Confidence            4677889998776432 2233444455544443  3566676665543322    245799999996 578888877777


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC-C
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG-S  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~-~  166 (358)
                      +.+..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....++..|+|||++.+ .
T Consensus       105 l~~~~~~~i~~qi~~aL~~LH~~~i~H~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  184 (337)
T cd07858         105 LSDDHCQYFLYQLLRGLKYIHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEKGDFMTEYVVTRWYRAPELLLNCS  184 (337)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECcCccccccCCCcccccccccccCccChHHHhcCC
Confidence            8899999999999999999999999999    9999999999999999999765432   334578899999999876 4


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|++||.+.+      .......+...+|.++........... .      ..........
T Consensus       185 ~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~  251 (337)
T cd07858         185 EYTTAIDVWSVGCIFAELLGRKPLFPGKD------YVHQLKLITELLGSPSEEDLGFIRNEK-A------RRYIRSLPYT  251 (337)
T ss_pred             CCCCcccHHHHHHHHHHHHcCCCCCCCCC------hHHHHHHHHHHhCCCChHHhhhcCchh-h------hHHHHhcCcc
Confidence            58999999999999999999999997543      455667777778876655432111000 0      0000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                      +...    .....+..++.+.+||.+||+.||++|||++++|+||||.....+.
T Consensus       252 ~~~~----~~~~~~~~~~~~~~li~~~l~~~P~~Rps~~ell~h~~~~~~~~~~  301 (337)
T cd07858         252 PRQS----FARLFPHANPLAIDLLEKMLVFDPSKRITVEEALAHPYLASLHDPS  301 (337)
T ss_pred             cccC----HHHHcccCCHHHHHHHHHHhcCChhhccCHHHHHcCcchhhhcCcc
Confidence            0000    0011234578899999999999999999999999999998754443

Serine/Threonine Kinases (STKs), Plant TEY Mitogen-Activated Protein Kinase (MAPK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TEY MAPK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. In plants, MAPKs are associated with physiological, developmental, hormonal, and stress responses. Some plants show numerous gene duplications of MAPKs. Arabidopsis thaliana harbors at least 20 MAPKs, named AtMPK1-20. There are two subtypes of plant MAPKs based on the conserved phosphorylation motif present in the activati

>cd07870 STKc_PFTAIRE2 Catalytic domain of the Serine/Threonine Kinase, PFTAIRE-2 kinase

Probab=99.97  E-value=7.5e-31  Score=237.34  Aligned_cols=255  Identities=18%  Similarity=0.152  Sum_probs=177.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccc-ccccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQ-NDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~-~~~~~~~~~   98 (358)
                      .+|..+++|.+.....+.....+.++......  +.+.+++....... .....|+||||+.+ ++.+++ .....+.+.
T Consensus        28 ~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~  103 (291)
T cd07870          28 INGQLVALKVISMKTEEGVPFTAIREASLLKG--LKHANIVLLHDIIH-TKETLTFVFEYMHT-DLAQYMIQHPGGLHPY  103 (291)
T ss_pred             CCCcEEEEEEecccCcCCCcHHHHHHHHHHHh--cCCCCEeEEEEEEe-cCCeEEEEEecccC-CHHHHHHhCCCCCCHH
Confidence            35678899988766555555566666655555  35666666555443 34578999999975 554444 334456777


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-CCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   ......+++.|+|||++.+. .++.
T Consensus       104 ~~~~~~~qi~~~L~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  183 (291)
T cd07870         104 NVRLFMFQLLRGLAYIHGQHILHRDLKPQNLLISYLGELKLADFGLARAKSIPSQTYSSEVVTLWYRPPDVLLGATDYSS  183 (291)
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCChHHEEEcCCCcEEEeccccccccCCCCCCCCCccccccccCCceeecCCCCCc
Confidence            888999999999999999999999    999999999999999999865432   22344678999999998864 4788


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+..     ...+.+..+...++.++............+........         ...
T Consensus       184 ~~Dv~slG~~l~~l~~g~~~f~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  249 (291)
T cd07870         184 ALDIWGAGCIFIEMLQGQPAFPGVS-----DVFEQLEKIWTVLGVPTEDTWPGVSKLPNYKPEWFLPC---------KPQ  249 (291)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCch-----hHHHHHHHHHHHcCCCChhhhhhhhhcccccchhcccc---------CCc
Confidence            9999999999999999999997543     23566667777777665544322211111100000000         000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ....... ....+..+.+|+.+||..||++|||++|++.||||
T Consensus       250 ~~~~~~~-~~~~~~~~~~ll~~~l~~dp~~R~t~~~~l~h~~~  291 (291)
T cd07870         250 QLRVVWK-RLSRPPKAEDLASQMLMMFPKDRISAQDALLHPYF  291 (291)
T ss_pred             chhhhcc-ccCCChHHHHHHHHHhCcCcccCcCHHHHhcCCCC
Confidence            0000000 00124678899999999999999999999999998

Serine/Threonine Kinases (STKs), PFTAIRE-2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PFTAIRE-2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PFTAIRE-2 shares sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. PFTAIRE-2 is also referred to as ALS2CR7 (amyotrophic lateral sclerosis 2 (juvenile) chromosome region candidate 7). It may be associated with amyotrophic lateral sclerosis 2 (ALS2), an autosomal recess

>PHA03390 pk1 serine/threonine-protein kinase 1; Provisional

Probab=99.97  E-value=3.9e-31  Score=236.40  Aligned_cols=194  Identities=16%  Similarity=0.237  Sum_probs=154.1

Q ss_pred             CCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC
Q 045353           55 GTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD  130 (358)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~  130 (358)
                      .+.+++........ ....|+||||++||+|.+++.....+.+.++..++.|++.++.++|+.+++|+    +||+++.+
T Consensus        67 ~h~~iv~~~~~~~~-~~~~~iv~e~~~~~~L~~~l~~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~nil~~~~  145 (267)
T PHA03390         67 DNPNFIKLYYSVTT-LKGHVLIMDYIKDGDLFDLLKKEGKLSEAEVKKIIRQLVEALNDLHKHNIIHNDIKLENVLYDRA  145 (267)
T ss_pred             cCCCEEEEEEEEec-CCeeEEEEEcCCCCcHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEeCC
Confidence            45666666655443 34789999999999999999877788999999999999999999999999998    99999999


Q ss_pred             C-cEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHH
Q 045353          131 V-QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALM  209 (358)
Q Consensus       131 ~-~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i  209 (358)
                      + .++|+|||++...... ....|+..|+|||++.+..++.++||||+||++|+|++|..||........     ....+
T Consensus       146 ~~~~~l~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~~l~~g~~p~~~~~~~~~-----~~~~~  219 (267)
T PHA03390        146 KDRIYLCDYGLCKIIGTP-SCYDGTLDYFSPEKIKGHNYDVSFDWWAVGVLTYELLTGKHPFKEDEDEEL-----DLESL  219 (267)
T ss_pred             CCeEEEecCccceecCCC-ccCCCCCcccChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCCCCcchh-----hHHHH
Confidence            8 9999999999766533 234689999999999998899999999999999999999999974332110     01111


Q ss_pred             HHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-HHHHh
Q 045353          210 MELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-AAQCL  288 (358)
Q Consensus       210 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-a~elL  288 (358)
                      .....                                       .....+...++.+.+||.+||+.||.+|++ ++|+|
T Consensus       220 ~~~~~---------------------------------------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~l  260 (267)
T PHA03390        220 LKRQQ---------------------------------------KKLPFIKNVSKNANDFVQSMLKYNINYRLTNYNEII  260 (267)
T ss_pred             HHhhc---------------------------------------ccCCcccccCHHHHHHHHHHhccChhhCCchHHHHh
Confidence            10000                                       011122345788999999999999999996 59999


Q ss_pred             cCcCcC
Q 045353          289 SHPWMS  294 (358)
Q Consensus       289 ~hpwf~  294 (358)
                      +||||.
T Consensus       261 ~h~~~~  266 (267)
T PHA03390        261 KHPFLK  266 (267)
T ss_pred             cCCccc
Confidence            999996

>cd07855 STKc_ERK5 Catalytic domain of the Serine/Threonine Kinase, Extracellular signal-Regulated Kinase 5

Probab=99.97  E-value=1.1e-30  Score=241.11  Aligned_cols=259  Identities=21%  Similarity=0.272  Sum_probs=187.5

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..+++|.+...... ...+++.++......  +.+.+++.......   .....+|+||||+. |+|.+++.....+
T Consensus        28 ~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~~  104 (334)
T cd07855          28 RSGKKVAIKKIPHAFDVPTLAKRTLRELKILRH--FKHDNIIAIRDILRPPGADFKDVYVVMDLME-SDLHHIIHSDQPL  104 (334)
T ss_pred             CCCCEEEEEEeccccccccchHHHHHHHHHHHh--cCCCCccCHHHhccccCCCCceEEEEEehhh-hhHHHHhccCCCC
Confidence            45778899988765433 234455555554444  34666665544332   23456899999996 5888888776778


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHh
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~  164 (358)
                      ++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......       ....+|+..|+|||++.
T Consensus       105 ~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  184 (334)
T cd07855         105 TEEHIRYFLYQLLRGLKYIHSANVIHRDLKPSNLLVNEDCELRIGDFGMARGLSSSPTEHKYFMTEYVATRWYRAPELLL  184 (334)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEecccccceeecccCcCCCcccccccccccccChHHhc
Confidence            899999999999999999999999998    9999999999999999999654321       12347899999999987


Q ss_pred             CC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh--hhhhccCCchhhh
Q 045353          165 GS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR--DFFNRHGDLRHIR  241 (358)
Q Consensus       165 ~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~  241 (358)
                      +. .++.++||||+||++|+|++|++||.+.+      ...++..+...+|.+|...........  .++........  
T Consensus       185 ~~~~~~~~~Di~slG~~l~el~~g~~pf~~~~------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~--  256 (334)
T cd07855         185 SLPEYTTAIDMWSVGCIFAEMLGRRQLFPGKN------YVHQLKLILSVLGSPSEEVLNRIGSDRVRKYIQNLPRKQP--  256 (334)
T ss_pred             CCcccccccchHHHHHHHHHHHcCCCccCCCC------hHHHHHHHHHHhCCChhHhhhhhchhhHHHHHhhcccCCC--
Confidence            64 48999999999999999999999997654      456777888888888776543221110  00000000000  


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                          .+       .....+..+..+.++|.+||+.||++|||++++++||||...+.+.
T Consensus       257 ----~~-------~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~l~~~~~~~~~~~~  304 (334)
T cd07855         257 ----VP-------WSKIFPKASPEALDLLSQMLQFDPEERITVEQALQHPFLAQYHDPD  304 (334)
T ss_pred             ----CC-------HHHHcccCCHHHHHHHHHHccCChhhCcCHHHHHhChhhhhccCCc
Confidence                00       0011123477899999999999999999999999999998754433

Serine/Threonine Kinases (STKs), Extracellular signal-Regulated Kinase 5 (ERK5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ERK5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. ERK5, also called Big MAPK1 (BMK1) or MAPK7, has a unique C-terminal extension, making it approximately twice as big as other MAPKs. This extension contains transcriptional activation capability which is inhibited by the N-terminal half. ERK5 is activated in response to growth factors and stress by a cascade that leads to its phosphorylation by the

>cd07865 STKc_CDK9 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 9

Probab=99.97  E-value=1.6e-30  Score=237.04  Aligned_cols=255  Identities=21%  Similarity=0.223  Sum_probs=176.9

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCC-------CCCCCCCcccccCCCCCccccccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-------PSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+|..+|+|.+..... +.......++.+...+  ..|++++.......       ......|+||||+.+ +|.+++..
T Consensus        35 ~~~~~~aik~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~~  111 (310)
T cd07865          35 KTKQIVALKKVLMENEKEGFPITALREIKILQL--LKHENVVNLIEICRTKATPYNRYKGSFYLVFEFCEH-DLAGLLSN  111 (310)
T ss_pred             CCCcEEEEEEEeccCCcCCchhHHHHHHHHHHh--CCCCCccceEEEEecccccccCCCceEEEEEcCCCc-CHHHHHHh
Confidence            3577888887765432 2233444455554444  35666655544321       223456999999986 66665554


Q ss_pred             c-cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcch
Q 045353           92 S-VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRC  159 (358)
Q Consensus        92 ~-~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~a  159 (358)
                      . ..+.+.++..++.|++.++.++|+.+++|+    +|||++.++.+||+|||++......       .....++..|+|
T Consensus       112 ~~~~~~~~~~~~i~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~a  191 (310)
T cd07865         112 KNVKFTLSEIKKVMKMLLNGLYYIHRNKILHRDMKAANILITKDGILKLADFGLARAFSLSKNSKPNRYTNRVVTLWYRP  191 (310)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCcEEECcCCCcccccCCcccCCCCccCcccCccccC
Confidence            3 357888999999999999999999999998    9999999999999999999654321       223467889999


Q ss_pred             hHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          160 PEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       160 PE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      ||++.+.. ++.++||||+||++|+|++|++||.+..      ....+..+..++|..|..+...... ...+.......
T Consensus       192 PE~~~~~~~~~~~~Di~slG~~l~el~t~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  264 (310)
T cd07865         192 PELLLGERDYGPPIDMWGAGCIMAEMWTRSPIMQGNT------EQHQLTLISQLCGSITPEVWPGVDK-LELFKKMELPQ  264 (310)
T ss_pred             cHHhcCCcccCchhhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhcccccc-hhhhhhccCCC
Confidence            99988754 7889999999999999999999997654      4567777888888877765443321 11111100000


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..       ..... ... .+...+..+.+||.+||..||.+|||++|+|+||||
T Consensus       265 ~~-------~~~~~-~~l-~~~~~~~~~~dli~~~l~~~P~~R~t~~e~l~h~~f  310 (310)
T cd07865         265 GQ-------KRKVK-ERL-KPYVKDPHALDLIDKLLVLDPAKRIDADTALNHDFF  310 (310)
T ss_pred             cc-------chhhH-Hhc-ccccCCHHHHHHHHHHhcCChhhccCHHHHhcCCCC
Confidence            00       00000 000 011124577899999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK9 together with a cyclin partner (cyclin T1, T2a, T2b, or K) is the main component of distinct positive transcription elongation factors (P-TEFb), which function as Ser2 C-terminal domain kinases of RNA polymerase II. P-TEFb participates in multipl

>cd05611 STKc_Rim15_like Catalytic domain of fungal Rim15-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=7.6e-31  Score=233.30  Aligned_cols=229  Identities=21%  Similarity=0.186  Sum_probs=168.9

Q ss_pred             ccCcccccccccCcc-c-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL-T-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|...... . .+....+..+... ......+.+++....... .....|+||||++||+|.+++.....+++
T Consensus        19 ~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~-~~~~~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   96 (260)
T cd05611          19 STGDYFAIKVLKKSDMIAKNQVTNVKAERAI-MMIQGESPYVAKLYYSFQ-SKDYLYLVMEYLNGGDCASLIKTLGGLPE   96 (260)
T ss_pred             CCCCeEEEEEecchhhhHHHHHHHHHHHHHH-HhhcCCCCCeeeeeeeEE-cCCeEEEEEeccCCCCHHHHHHHcCCCCH
Confidence            457788999876432 1 2222223323222 223345666666665443 34578999999999999999987777889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.|++.++.++|+.+++|+    +||+++.++.+||+|||++..... .....|+..|+|||.+.+..++.++|
T Consensus        97 ~~~~~i~~qi~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~-~~~~~~~~~y~~pe~~~~~~~~~~~D  175 (260)
T cd05611          97 DWAKQYIAEVVLGVEDLHQRGIIHRDIKPENLLIDQTGHLKLTDFGLSRNGLE-NKKFVGTPDYLAPETILGVGDDKMSD  175 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEECCCCcEEEeecccceeccc-cccCCCCcCccChhhhcCCCCcchhh
Confidence            9999999999999999999999999    999999999999999999875433 23446889999999999888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||+|+++|+|++|..||...+      .......+.......                                     
T Consensus       176 v~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~-------------------------------------  212 (260)
T cd05611         176 WWSLGCVIFEFLFGYPPFHAET------PDAVFDNILSRRINW-------------------------------------  212 (260)
T ss_pred             hHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhcccCC-------------------------------------
Confidence            9999999999999999996433      112111111000000                                     


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCH---HHHhcCcCcCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTA---AQCLSHPWMSA  295 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta---~elL~hpwf~~  295 (358)
                       ........++.+.++|.+||+.||++|||+   +|+|.||||..
T Consensus       213 -~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~~~l~~~~~~~  256 (260)
T cd05611         213 -PEEVKEFCSPEAVDLINRLLCMDPAKRLGANGYQEIKSHPFFKS  256 (260)
T ss_pred             -CCcccccCCHHHHHHHHHHccCCHHHccCCCcHHHHHcChHhhc
Confidence             001112346788999999999999999954   79999999975

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, fungal Rim15-like kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include Saccharomyces cerevisiae Rim15, Schizosaccharomyces pombe cek1, and similar fungal proteins. They contain a central catalytic domain, which contains an insert relative to MAST kinases. In addition, Rim15 contains a C-terminal signal receiver (REC) domain while cek1 contains an N-terminal PAS domain. Rim15 (or Rim15p) functions as a regulator of meiosis. It acts as a do

>cd07843 STKc_CDC2L1 Catalytic domain of the Serine/Threonine Kinase, Cell Division Cycle 2-like 1

Probab=99.97  E-value=1e-30  Score=236.70  Aligned_cols=253  Identities=23%  Similarity=0.220  Sum_probs=178.8

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccc-cccCh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      +|..+++|.+..... +.....+.++.....+.  .|.+++......... ....|+||||+.+ +|.+++... ..+++
T Consensus        29 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~~~l~~  105 (293)
T cd07843          29 TGEIVALKKLKMEKEKEGFPITSLREINILLKL--QHPNIVTVKEVVVGSNLDKIYMVMEYVEH-DLKSLMETMKQPFLQ  105 (293)
T ss_pred             CCcEEEEEEEeeccccccchhhHHHHHHHHHhc--CCCCEEEEEEEEEecCCCcEEEEehhcCc-CHHHHHHhccCCCCH
Confidence            466778887764322 22333445555555553  466666554433222 2689999999985 888877643 35788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-CC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-YS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~~  169 (358)
                      ..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......   .....+++.|+|||++.+.. ++
T Consensus       106 ~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  185 (293)
T cd07843         106 SEVKCLMLQLLSGVAHLHDNWILHRDLKTSNLLLNNRGILKICDFGLAREYGSPLKPYTQLVVTLWYRAPELLLGAKEYS  185 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCcEEEeecCceeeccCCccccccccccccccCchhhcCCcccc
Confidence            9999999999999999999999998    9999999999999999999765432   33456788999999998754 68


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|.+||...+      ....+..+...++.++...+.........          .... +...
T Consensus       186 ~~~Di~slG~~l~~l~~g~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~-~~~~  248 (293)
T cd07843         186 TAIDMWSVGCIFAELLTKKPLFPGKS------EIDQLNKIFKLLGTPTEKIWPGFSELPGA----------KKKT-FTKY  248 (293)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCchHHHHHhhccchh----------cccc-cccc
Confidence            99999999999999999999997654      45667777777777665544322110000          0000 0000


Q ss_pred             hhHHhhhcCChh-hHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNER-DAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~-~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ....-...++.. .++.+.+||.+||+.||++|||+.|+|+||||
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~l~~~p~~R~t~~ell~~~~f  293 (293)
T cd07843         249 PYNQLRKKFPALSLSDNGFDLLNRLLTYDPAKRISAEDALKHPYF  293 (293)
T ss_pred             cchhhhccccccCCChHHHHHHHHHhccCccccCCHHHHhcCCCC
Confidence            000001112222 47788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cell Division Cycle 2-like 1 (CDC2L1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDC2L1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDC2L1, also called PITSLRE, exists in different isoforms which are named using the alias CDK11(p). The CDC2L1 gene produces two protein products, CDK11(p110) and CDK11(p58). CDC2L1 is also represented by the caspase-processed CDK11(p46). CDK11(p110), the

>cd05574 STKc_phototropin_like Catalytic domain of Phototropin-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-30  Score=238.65  Aligned_cols=229  Identities=16%  Similarity=0.121  Sum_probs=172.2

Q ss_pred             cCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           21 SSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      +|..+++|.+.......  ..+++.++.+....  +.+.+++....... .....|+||||+.|++|.+++...  ..+.
T Consensus        25 ~~~~~aiK~~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~  101 (316)
T cd05574          25 TGKLFALKVLDKKEMIKRNKVKRVLTEQEILAT--LDHPFLPTLYASFQ-TETYLCLVMDYCPGGELFRLLQRQPGKCLS  101 (316)
T ss_pred             CCcEEEEEEEeccccchHHHHHHHHHHHHHHHh--CCCCCchhheeeee-cCCEEEEEEEecCCCCHHHHHHhCCCCccC
Confidence            46788889887654433  44555566555544  35666766655443 345789999999999999988643  4678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------------------------
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------------------------  147 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------------------------  147 (358)
                      +..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......                         
T Consensus       102 ~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (316)
T cd05574         102 EEVARFYAAEVLLALEYLHLLGIVYRDLKPENILLHESGHIMLSDFDLSKQSDVEPPPVSKALRKGSRRSSVNSIPSETF  181 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccCCChHHeEEcCCCCEEEeecchhhcccccccccccccccccccccccccchhhh
Confidence            88899999999999999999999988    8999999999999999998543211                         


Q ss_pred             -------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhh
Q 045353          148 -------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI  220 (358)
Q Consensus       148 -------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~  220 (358)
                             ....+||..|+|||++.+..++.++|||||||++|+|++|..||.+.+.      ...+..+   ....+   
T Consensus       182 ~~~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~Di~slG~ll~~l~~g~~pf~~~~~------~~~~~~~---~~~~~---  249 (316)
T cd05574         182 SEEPSFRSNSFVGTEEYIAPEVISGDGHGSAVDWWTLGILLYEMLYGTTPFKGSNR------DETFSNI---LKKEV---  249 (316)
T ss_pred             cccccCCCCCCcCccCCcCHHHHcCCCCCchHHHHHHHHHHHHHhhCCCCCCCCch------HHHHHHH---hcCCc---
Confidence                   1123688999999999998899999999999999999999999975431      1111111   11000   


Q ss_pred             hcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC----HHHHhcCcCcCCC
Q 045353          221 ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT----AAQCLSHPWMSAG  296 (358)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t----a~elL~hpwf~~~  296 (358)
                                                        .+......+..+.+||.+||+.||++|||    ++|+|+||||+..
T Consensus       250 ----------------------------------~~~~~~~~~~~~~~li~~~l~~~p~~R~s~~~~~~~ll~~~~~~~~  295 (316)
T cd05574         250 ----------------------------------TFPGSPPVSSSARDLIRKLLVKDPSKRLGSKRGAAEIKQHPFFRGV  295 (316)
T ss_pred             ----------------------------------cCCCccccCHHHHHHHHHHccCCHhHCCCchhhHHHHHcCchhhcC
Confidence                                              00011114678999999999999999999    9999999999975


Q ss_pred             CC
Q 045353          297 PQ  298 (358)
Q Consensus       297 ~~  298 (358)
                      ..
T Consensus       296 ~~  297 (316)
T cd05574         296 NW  297 (316)
T ss_pred             Ch
Confidence            43

Serine/Threonine Kinases (STKs), Phototropin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The phototropin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Included in this subfamily are plant phototropins and predominantly uncharacterized fungal STKs whose catalytic domains resemble the phototropin kinase domain. One protein from Neurospora crassa is called nrc-2. Phototropins are blue-light receptors that control responses such as phototropism, stromatal opening, and chloroplast movement in order to optimize the photosynthetic efficiency of plants. They are light-activated STKs that contain an N-termin

>cd07846 STKc_CDKL2_3 Catalytic domain of the Serine/Threonine Kinases, Cyclin-Dependent protein Kinase Like 2 and 3

Probab=99.97  E-value=1.4e-30  Score=234.84  Aligned_cols=253  Identities=20%  Similarity=0.261  Sum_probs=178.5

Q ss_pred             cCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      +|..+++|.+....... ..+.+.++.+....  +.|++++....... .....|+||||+++++|..+......+.+.+
T Consensus        25 ~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~  101 (286)
T cd07846          25 TGQIVAIKKFLESEDDKMVKKIAMREIRMLKQ--LRHENLVNLIEVFR-RKKRLYLVFEFVDHTVLDDLEKYPNGLDESR  101 (286)
T ss_pred             CCCEEEEEeHhhccCcchhhHHHHHHHHHHHh--cCCcchhhHHHhcc-cCCeEEEEEecCCccHHHHHHhccCCCCHHH
Confidence            46778888876543332 34556666555554  35666666555543 4567899999999999998776655678899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-CCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-YSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~~~~  171 (358)
                      +..++.+++.++.|+|+.+++|+    +||++++++.++|+|||++......   .....++..|+|||++.+.. ++.+
T Consensus       102 ~~~~~~~i~~~l~~LH~~~i~h~~l~p~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  181 (286)
T cd07846         102 VRKYLFQILRGIEFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYTDYVATRWYRAPELLVGDTKYGRA  181 (286)
T ss_pred             HHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCcEEEEeeeeeeeccCCccccCcccceeeccCcHHhccccccCch
Confidence            99999999999999999999988    9999999999999999998764322   23456889999999998744 7889


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|.+||....      ..+.+..+....+............. .......    .....      .
T Consensus       182 ~Dv~slG~~l~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~~~~------~  244 (286)
T cd07846         182 VDIWAVGCLVTEMLTGEPLFPGDS------DIDQLYHIIKCLGNLIPRHQEIFQKN-PLFAGMR----LPEVK------E  244 (286)
T ss_pred             HhHHHHHHHHHHHHcCCCCCCCCc------hHHHHHHHHHHhCCCchhhHHHhccc-hHhhccc----ccccc------C
Confidence            999999999999999999997543      34555666666555432211000000 0000000    00000      0


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ........+..+..+.+|+.+||..||++|||+.++++||||
T Consensus       245 ~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  286 (286)
T cd07846         245 IEPLEKRFPKLSGLVLDLAKQCLRIDPDDRPSSSQLLHHEFF  286 (286)
T ss_pred             cchHHHhCCCcCHHHHHHHHHHhcCCcccchhHHHHhcCCCC
Confidence            000001123456789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase like 2 (CDKL2) and CDKL3 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDKL2 and CDKL3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKL2, also called p56 KKIAMRE, is expressed in testis, kidney, lung, and brain. It functions mainly in mature neurons and plays an important role in learning and memory. Inactivation of CDKL3, also called NKI

>cd07836 STKc_Pho85 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Pho85

Probab=99.97  E-value=1.5e-30  Score=234.43  Aligned_cols=251  Identities=22%  Similarity=0.273  Sum_probs=180.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---cccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---~~~~   96 (358)
                      .+|..+++|.+...........+.++.....+.  .+.+++....... .....|+||||+.| +|.+++...   ..+.
T Consensus        23 ~~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~   98 (284)
T cd07836          23 TTGEIVALKEIHLDAEEGTPSTAIREISLMKEL--KHENIVRLHDVIH-TENKLMLVFEYMDK-DLKKYMDTHGVRGALD   98 (284)
T ss_pred             CCCeEEEEEEecccccccchHHHHHHHHHHHhh--cCCCEeeeeeeEe-eCCcEEEEEecCCc-cHHHHHHhcCCCCCcC
Confidence            457788999887665555556666666655553  5666666655443 34678999999996 677766532   3468


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      +.++..++.+++.++.++|+.+++|+    +||++++++.++|+|||++......   .....++..|++||++.+.. +
T Consensus        99 ~~~~~~~~~qi~~~l~~lH~~~i~h~dl~p~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  178 (284)
T cd07836          99 PNTVKSFTYQLLKGIAFCHENRVLHRDLKPQNLLINKRGELKLADFGLARAFGIPVNTFSNEVVTLWYRAPDVLLGSRTY  178 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEECCCCcEEEeecchhhhhcCCccccccccccccccChHHhcCCCCC
Confidence            88999999999999999999999999    9999999999999999999654322   23456789999999987754 7


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|.+||.+.+      ..+....+.+..+.+....+........+.......           
T Consensus       179 ~~~~Dv~slG~~l~~l~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  241 (284)
T cd07836         179 STSIDIWSVGCIMAEMITGRPLFPGTN------NEDQLLKIFRIMGTPTESTWPGISQLPEYKPTFPRY-----------  241 (284)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCChhhHHHHhcCchhcccccCC-----------
Confidence            899999999999999999999997654      455566666666655443332211111110000000           


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ...  ......+..+..+.++|.+||+.||.+|||+.++++||||
T Consensus       242 ~~~--~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~f  284 (284)
T cd07836         242 PPQ--DLQQLFPHADPLGIDLLHRLLQLNPELRISAHDALQHPWF  284 (284)
T ss_pred             ChH--HHHHHhhhcCcHHHHHHHHHhcCCcccCCCHHHHhcCCCC
Confidence            000  0011122346788999999999999999999999999998

Serine/Threonine Kinases (STKs), Pho85 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Pho85 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Pho85 is a multifunctional Cyclin-Dependent protein Kinase (CDK) in yeast. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. Pho85 is regulated by 10 different cyclins (Pcls) and plays a role in G1 progression, cell polarity, phosphate and glycogen metabolism, gene expression, and in signaling changes in the environment.

>cd06612 STKc_MST1_2 Catalytic domain of the Protein Serine/Threonine Kinases, Mammalian Ste20-like protein kinase 1 and 2

Probab=99.97  E-value=9.3e-31  Score=231.94  Aligned_cols=222  Identities=21%  Similarity=0.219  Sum_probs=168.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      ++..+++|.+.....   ...+.++.+.....  .+++++........ ....|++|||+.|++|.+++.. ...+++..
T Consensus        27 ~~~~~~~k~~~~~~~---~~~~~~e~~~~~~l--~~~~i~~~~~~~~~-~~~~~l~~e~~~~~~L~~~l~~~~~~l~~~~  100 (256)
T cd06612          27 TGQVVAIKVVPVEED---LQEIIKEISILKQC--DSPYIVKYYGSYFK-NTDLWIVMEYCGAGSVSDIMKITNKTLTEEE  100 (256)
T ss_pred             CCcEEEEEEeecHHH---HHHHHHHHHHHHhC--CCCcEeeeeeeeec-CCcEEEEEecCCCCcHHHHHHhCccCCCHHH
Confidence            356778888765432   55666666655553  66666665554433 4778999999999999998864 34578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......   .....|+..|+|||++.+..++.++
T Consensus       101 ~~~~~~~l~~~l~~lh~~~i~H~dl~~~ni~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~  180 (256)
T cd06612         101 IAAILYQTLKGLEYLHSNKKIHRDIKAGNILLNEEGQAKLADFGVSGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNNKA  180 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCcceEEECCCCcEEEcccccchhcccCccccccccCCccccCHHHHhcCCCCchh
Confidence            99999999999999999999998    9999999999999999999765432   2334688899999999998899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||+||++|+|++|+.||.....      ....   ..+....+                                   
T Consensus       181 Di~s~G~il~~l~~g~~p~~~~~~------~~~~---~~~~~~~~-----------------------------------  216 (256)
T cd06612         181 DIWSLGITAIEMAEGKPPYSDIHP------MRAI---FMIPNKPP-----------------------------------  216 (256)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcch------hhhh---hhhccCCC-----------------------------------
Confidence            999999999999999999964321      1110   00000000                                   


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                       .....+...+..+.++|.+||+.||++|||+.|+|+||||
T Consensus       217 -~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~il~~~~~  256 (256)
T cd06612         217 -PTLSDPEKWSPEFNDFVKKCLVKDPEERPSAIQLLQHPFI  256 (256)
T ss_pred             -CCCCchhhcCHHHHHHHHHHHhcChhhCcCHHHHhcCCCC
Confidence             0111222345678999999999999999999999999998

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 1 (MST1) and MST2 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST1/2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of MST1, MST2, and related proteins including Drosophila Hippo and Dictyostelium discoideum Krs1 (kinase responsive to stress 1). MST1/2 and Hippo are involved in a conserved pathway that governs cell contact inhibition, organ size control, and tumor development. MST1 activates the mitogen-activated protein kinases (MAPKs) p38 and c-Jun N-terminal kinase (JNK) through MKK7 (a

>cd05632 STKc_GRK5 Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase 5

Probab=99.97  E-value=9.3e-31  Score=236.18  Aligned_cols=230  Identities=16%  Similarity=0.180  Sum_probs=170.1

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      .+|..+|+|.+........  ...+.++.+...+  ..+.+++....... .....|+||||+.||+|.+++...  ..+
T Consensus        23 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~il~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~   99 (285)
T cd05632          23 ATGKMYACKRLEKKRIKKRKGESMALNEKQILEK--VNSQFVVNLAYAYE-TKDALCLVLTIMNGGDLKFHIYNMGNPGF   99 (285)
T ss_pred             CCCcEEEEEEeehhhhhhhhHHHHHHHHHHHHHH--cCCcCceeEEEEEe-cCCEEEEEEEeccCccHHHHHHHhcCCCC
Confidence            4577888998866433222  2334455554444  35555555544333 245689999999999998877542  357


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..+..++.|++.++.++|+.+++|+    +|||+++++.+||+|||++.....  ......|+..|+|||++.+..++
T Consensus       100 ~~~~~~~~~~ql~~~l~~lH~~~iiH~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~g~~~~~aPE~~~~~~~~  179 (285)
T cd05632         100 EEERALFYAAEILCGLEDLHRENTVYRDLKPENILLDDYGHIRISDLGLAVKIPEGESIRGRVGTVGYMAPEVLNNQRYT  179 (285)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeecCCCHHHEEECCCCCEEEecCCcceecCCCCcccCCCCCcCccChHHhcCCCCC
Confidence            888999999999999999999999998    999999999999999999966432  23445799999999999988899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++|+|++|..||.+..      .......+.......                                 
T Consensus       180 ~~~Di~slG~~l~~l~~g~~P~~~~~------~~~~~~~~~~~~~~~---------------------------------  220 (285)
T cd05632         180 LSPDYWGLGCLIYEMIEGQSPFRGRK------EKVKREEVDRRVLET---------------------------------  220 (285)
T ss_pred             cccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhhhcc---------------------------------
Confidence            99999999999999999999996443      111111111111000                                 


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                           ...++...+..+.+|+.+||+.||++|||     +.++++|+||+..
T Consensus       221 -----~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~~~l~~~~~~~~~  267 (285)
T cd05632         221 -----EEVYSAKFSEEAKSICKMLLTKDPKQRLGCQEEGAGEVKRHPFFRNM  267 (285)
T ss_pred             -----ccccCccCCHHHHHHHHHHccCCHhHcCCCcccChHHHHcChhhhcC
Confidence                 01122334667889999999999999999     8999999999874

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, GRK5 isoform, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. There are seven types of GRKs, named GRK1 to GRK7. GRK5 is widely expressed in many tissues. It associates with

>cd06628 STKc_MAPKKK_Byr2_like Catalytic domain of fungal Byr2-like MAP Kinase Kinase Kinases

Probab=99.97  E-value=1.4e-30  Score=232.50  Aligned_cols=224  Identities=20%  Similarity=0.210  Sum_probs=169.1

Q ss_pred             ccCcccccccccCccchhh--------hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--------KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .++..+++|..........        .+.++++.....+  ..|++++....... .....|+||||++|++|.+++..
T Consensus        23 ~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~   99 (267)
T cd06628          23 SSGELMAVKQVELPSVSASSKDRKRSMLDALAREIALLKE--LQHENIVQYLGSSL-DADHLNIFLEYVPGGSVAALLNN   99 (267)
T ss_pred             CCCcEEEEEEecCCCcccchhHHHHHHHHHHHHHHHHHHh--cCCCCeeeEEEEEE-eCCccEEEEEecCCCCHHHHHHh
Confidence            3466788887766544333        1234444444444  35666666655433 35688999999999999999987


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---------CCCCccCCCcc
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---------FTNDIQTRQYR  158 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---------~~~~~gt~~Y~  158 (358)
                      ...+++..+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......         .....|+..|+
T Consensus       100 ~~~l~~~~~~~~~~~l~~~l~~lH~~~ivH~di~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~y~  179 (267)
T cd06628         100 YGAFEETLVRNFVRQILKGLNYLHNRGIIHRDIKGANILVDNKGGIKISDFGISKKLEANSLSTKTNGARPSLQGSVFWM  179 (267)
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHhcCcccccCCHHHEEEcCCCCEEecccCCCcccccccccCCccccccccCCCcCcc
Confidence            7778888999999999999999999999998    9999999999999999998665421         11235788999


Q ss_pred             hhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          159 CPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       159 aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      |||.+.+..++.++|+||+||++|+|++|..||....      ..   ..+.......                      
T Consensus       180 ~pe~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~---~~~~~~~~~~----------------------  228 (267)
T cd06628         180 APEVVKQTSYTRKADIWSLGCLVVEMLTGKHPFPDCT------QL---QAIFKIGENA----------------------  228 (267)
T ss_pred             ChhHhccCCCCchhhhHHHHHHHHHHhhCCCCCCCcc------HH---HHHHHHhccC----------------------
Confidence            9999998889999999999999999999999996432      11   1111111100                      


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                      ....+...+..+.++|.+||+.||.+|||+.|+++||||
T Consensus       229 ----------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  267 (267)
T cd06628         229 ----------------SPEIPSNISSEAIDFLEKTFEIDHNKRPTAAELLKHPFL  267 (267)
T ss_pred             ----------------CCcCCcccCHHHHHHHHHHccCCchhCcCHHHHhhCCCC
Confidence                            011223346788999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Byr2-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Schizosaccharomyces pombe Byr2, Saccharomyces cerevisiae and Cryptococcus neoformans Ste11, and related proteins. They contain an N-terminal SAM (sterile alpha-motif) domain, which mediates protein-protein interaction, and a C-terminal catalytic domain. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate

>PF00069 Pkinase: Protein kinase domain Protein kinase; unclassified specificity

Probab=99.97  E-value=3.5e-31  Score=235.09  Aligned_cols=227  Identities=21%  Similarity=0.317  Sum_probs=174.0

Q ss_pred             cccccccccCccchhhhHH-hhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKK-VKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      ..+|+|............. ..++.+...+.  .+++++........ ....++||||+.+++|.+++.....++..++.
T Consensus        25 ~~~~~K~~~~~~~~~~~~~~~~~e~~~~~~l--~~~~i~~~~~~~~~-~~~~~~v~~~~~~~~L~~~l~~~~~~~~~~~~  101 (260)
T PF00069_consen   25 QKVAVKIIDKSEIEEEEREENIREIKILRRL--RHPNIVQILDVFQD-DNYLYIVMEYCPGGSLQDYLQKNKPLSEEEIL  101 (260)
T ss_dssp             EEEEEEEEESTTHHHHHHHHHHHHHHHHHHH--TBTTBCHEEEEEEE-SSEEEEEEEEETTEBHHHHHHHHSSBBHHHHH
T ss_pred             eEEEEEEeccccccccccchhhhhhhccccc--cccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            3678888888765555543 34455555543  56666655444433 66788999999999999999877778999999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHh-CCCCCcchh
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLL-GSKYSTSAD  173 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~-~~~~~~~~D  173 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.++|+|||.+...   ........+|..|+|||++. +..++.++|
T Consensus       102 ~~~~qi~~~L~~Lh~~~i~H~dikp~NIl~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~D  181 (260)
T PF00069_consen  102 KIAYQILEALAYLHSKGIVHRDIKPENILLDENGEVKLIDFGSSVKLSENNENFNPFVGTPEYMAPEVLQQGKKYTRKSD  181 (260)
T ss_dssp             HHHHHHHHHHHHHHHTTEEESSBSGGGEEESTTSEEEESSGTTTEESTSTTSEBSSSSSSGGGSCHHHHTTTSSBSTHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999999999998    9999999999999999999752   33355668899999999998 777899999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||+|+++|+|++|..||....      ..+....+..........                                  
T Consensus       182 i~slG~il~~l~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~----------------------------------  221 (260)
T PF00069_consen  182 IWSLGIILYELLTGKLPFEESN------SDDQLEIIEKILKRPLPS----------------------------------  221 (260)
T ss_dssp             HHHHHHHHHHHHHSSSSSTTSS------HHHHHHHHHHHHHTHHHH----------------------------------
T ss_pred             cccccccccccccccccccccc------chhhhhhhhhcccccccc----------------------------------
Confidence            9999999999999999997541      233333333332211110                                  


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                       ...........+.++|.+||+.||++|||+.++++||||
T Consensus       222 -~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~l~~~~~~  260 (260)
T PF00069_consen  222 -SSQQSREKSEELRDLIKKMLSKDPEQRPSAEELLKHPWF  260 (260)
T ss_dssp             -HTTSHTTSHHHHHHHHHHHSSSSGGGSTTHHHHHTSGGG
T ss_pred             -cccccchhHHHHHHHHHHHccCChhHCcCHHHHhcCCCC
Confidence             001111124789999999999999999999999999998

Serine/Threonine protein kinases, catalytic domain Tyrosine kinase, catalytic domain; InterPro: IPR017442 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Eukaryotic protein kinases [, , , , ] are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. There are a number of conserved regions in the catalytic domain of protein kinases. In the N-terminal extremity of the catalytic domain there is a glycine-rich stretch of residues in the vicinity of a lysine residue, which has been shown to be involved in ATP binding. In the central part of the catalytic domain there is a conserved aspartic acid residue which is important for the catalytic activity of the enzyme []. This entry includes protein kinases from eukaryotes and viruses and may include some bacterial hits too.; GO: 0004672 protein kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 3GC7_A 3ZYA_A 3MPT_A 3NEW_A 3MVM_A 1R3C_A 2FST_X 3E93_A 3HV5_B 3OCG_A ....

>cd08216 PK_STRAD Pseudokinase domain of STE20-related kinase adapter protein

Probab=99.97  E-value=2.3e-30  Score=236.69  Aligned_cols=259  Identities=17%  Similarity=0.132  Sum_probs=178.1

Q ss_pred             cCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           21 SSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      +|..+|+|..... .+....+++.++.+...++  .|++++...... ......|++|||+++|+|.+++...  ..+.+
T Consensus        24 ~~~~~avK~~~~~~~~~~~~~~~~~Ei~~l~~l--~h~~i~~~~~~~-~~~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~  100 (314)
T cd08216          24 TNTLVAVKKINLDSCSKEDLKLLQQEIITSRQL--QHPNILPYVTSF-IVDSELYVVSPLMAYGSCEDLLKTHFPEGLPE  100 (314)
T ss_pred             CCCEEEEEEEeccccchhHHHHHHHHHHHHHhc--CCcchhhhhhee-ecCCeEEEEEeccCCCCHHHHHHHhcccCCCH
Confidence            6788999998765 5566667787877766663  566666655543 3456789999999999999988743  35778


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----------CCCCCccCCCcchhHHH
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----------QFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----------~~~~~~gt~~Y~aPE~l  163 (358)
                      ..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||.+.....          ......++..|+|||++
T Consensus       101 ~~~~~~~~~l~~~L~~LH~~~ivH~dlk~~Nili~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  180 (314)
T cd08216         101 LAIAFILKDVLNALDYIHSKGFIHRSVKASHILLSGDGKVVLSGLRYSVSMIKHGKRQRVVHDFPKSSVKNLPWLSPEVL  180 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCCCcceEEEecCCceEEecCccceeeccccccccccccccccccccccccCHHHh
Confidence            8899999999999999999999998    999999999999999998854321          12234577889999999


Q ss_pred             hCC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          164 LGS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       164 ~~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      .+.  .|+.++||||+||++|+|++|..||....      ..  ...+....+..+......... ..    ........
T Consensus       181 ~~~~~~~~~~~Diws~G~il~el~~g~~pf~~~~------~~--~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~  247 (314)
T cd08216         181 QQNLQGYNEKSDIYSVGITACELANGHVPFKDMP------AT--QMLLEKVRGTVPCLLDKSTYP-LY----EDSMSQSR  247 (314)
T ss_pred             cCCCCCCCcchhHHHHHHHHHHHHhCCCCCCCCC------HH--HHHHHHHhccCccccccCchh-hh----cCCcCccc
Confidence            874  48899999999999999999999996432      11  111222233222111100000 00    00000000


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ....................+.++.+|+.+||.+||++|||++|+|+||||+..
T Consensus       248 -~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~ll~~p~~~~~  301 (314)
T cd08216         248 -SSNEHPNNRDSVDHPYTRTFSEHFHQFVELCLQRDPESRPSASQLLNHSFFKQC  301 (314)
T ss_pred             -ccccccchhhhhhcchhhHHHHHHHHHHHHHhhcCCCcCcCHHHHhcCchHhhh
Confidence             000000001111122334457789999999999999999999999999999854

Protein Kinase family, STE20-related kinase adapter protein (STRAD) subfamily, pseudokinase domain. The STRAD subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpigmentation of the buc

>cd06636 STKc_MAP4K4_6 Catalytic domain of the Protein Serine/Threonine Kinases, Mitogen-Activated Protein Kinase Kinase Kinase Kinase 4 and 6

Probab=99.97  E-value=9.1e-31  Score=235.67  Aligned_cols=225  Identities=17%  Similarity=0.190  Sum_probs=161.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-----CCCCCCCcccccCCCCCcccccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-----PSSPDNFSVDTIPNGVSVEERQNDS--   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv~e~~~gg~L~~~~~~~--   92 (358)
                      .++..+++|.....  ......+..+....... ..+.+++.......     ......|+||||+.+|+|.+++...  
T Consensus        39 ~~~~~~a~K~~~~~--~~~~~~~~~e~~~l~~~-~~h~~i~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~L~~~~~~~~~  115 (282)
T cd06636          39 KTGQLAAIKVMDVT--EDEEEEIKLEINMLKKY-SHHRNIATYYGAFIKKSPPGHDDQLWLVMEFCGAGSVTDLVKNTKG  115 (282)
T ss_pred             CCCcEEEEEEEecC--hHHHHHHHHHHHHHHHh-cCCCcEEEEeeehhcccccCCCCEEEEEEEeCCCCcHHHHHHHccC
Confidence            35567788876443  22333444444433333 24566665544432     2245679999999999999988642  


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ....+..+..++.|++.++.|+|+.+++|+    +||+++.++.++|+|||++.....   ......|++.|+|||++..
T Consensus       116 ~~~~~~~~~~~~~qi~~al~~LH~~~ivH~dl~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~l~~  195 (282)
T cd06636         116 NALKEDWIAYICREILRGLAHLHAHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIAC  195 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCcchhhhhccccCCCcccccccccCHhhcCc
Confidence            346677888999999999999999999999    999999999999999999865432   2334578999999999863


Q ss_pred             -----CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          166 -----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       166 -----~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                           ..++.++|||||||++|+|++|..||....      ....   +..+....+.                      
T Consensus       196 ~~~~~~~~~~~~DvwslG~~l~el~~g~~p~~~~~------~~~~---~~~~~~~~~~----------------------  244 (282)
T cd06636         196 DENPDATYDYRSDIWSLGITAIEMAEGAPPLCDMH------PMRA---LFLIPRNPPP----------------------  244 (282)
T ss_pred             ccCcCcCCCcccchhHHHHHHHHHHhCCCCccccC------HHhh---hhhHhhCCCC----------------------
Confidence                 458889999999999999999999996432      1111   1111000000                      


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                     .......+..+.+||.+||..||.+|||+.|+|+||||
T Consensus       245 ---------------~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~ell~~~~~  282 (282)
T cd06636         245 ---------------KLKSKKWSKKFIDFIEGCLVKNYLSRPSTEQLLKHPFI  282 (282)
T ss_pred             ---------------CCcccccCHHHHHHHHHHhCCChhhCcCHHHHhcCCCC
Confidence                           00112235789999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 4 (MAPKKKK4 or MAP4K4) and MAPKKKK6 (or MAP4K6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K4/MAP4K6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain. MAP4Ks (or MAPKKKKs) are involved in MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Ea

>KOG1026 consensus Nerve growth factor receptor TRKA and related tyrosine kinases [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=4.7e-31  Score=253.33  Aligned_cols=219  Identities=14%  Similarity=0.172  Sum_probs=183.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      +...-||+|.|..+.+.++++.|+|++.-.+.  +.|++||++......++ -+++|.|||..|+|.+||...       
T Consensus       514 ~~~~lVAVK~LKd~a~~~~~~dF~REaeLla~--l~H~nIVrLlGVC~~~~-P~~MvFEYm~~GDL~eFLra~sP~a~~~  590 (774)
T KOG1026|consen  514 QDEQLVAVKALKDKAENQARQDFRREAELLAE--LQHPNIVRLLGVCREGD-PLCMVFEYMDHGDLHEFLRARSPKADKL  590 (774)
T ss_pred             ccceehhHhhhcccccHHHHHHHHHHHHHHHh--ccCCCeEEEEEEEccCC-eeEEEEEecccccHHHHHHhhCCccccc
Confidence            34456899999999999999999999999888  68999999999887655 468899999999999998721       


Q ss_pred             -------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCC----ccCCC
Q 045353           93 -------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTND----IQTRQ  156 (358)
Q Consensus        93 -------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~----~gt~~  156 (358)
                             ..++..+...+..||+.|+.|+-++.++||    .|+||.++..|||+|||+++..-.. +...    .-...
T Consensus       591 ~~g~~~~~~L~~~q~L~iA~QIAaGM~YLs~~~FVHRDLATRNCLVge~l~VKIsDfGLsRdiYssDYYk~~~~t~lPIR  670 (774)
T KOG1026|consen  591 ASGQDTPPPLSTSQFLHIATQIAAGMEYLSSHHFVHRDLATRNCLVGENLVVKISDFGLSRDIYSSDYYKVRGNTLLPIR  670 (774)
T ss_pred             cCCCCCCCCCCHHHHHHHHHHHHHHHHHHHhCcccccchhhhhceeccceEEEecccccchhhhhhhhhcccCCceeeee
Confidence                   125667899999999999999999999999    8999999999999999999764332 2222    23568


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |||||.+..+.|+.++||||+||+|||+++ |..||.+.+      +++.+..+..-                       
T Consensus       671 WMppEsIly~kFTteSDVWs~GVvLWEIFsyG~QPy~glS------n~EVIe~i~~g-----------------------  721 (774)
T KOG1026|consen  671 WMPPESILYGKFTTESDVWSFGVVLWEIFSYGKQPYYGLS------NQEVIECIRAG-----------------------  721 (774)
T ss_pred             cCCHHHhhcCcccchhhhhhhhhhhhhhhccccCcccccc------hHHHHHHHHcC-----------------------
Confidence            999999999999999999999999999998 999998877      45555444210                       


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                                        ..+..|+.++.++.+|+..||+.+|++||+++||-
T Consensus       722 ------------------~lL~~Pe~CP~~vY~LM~~CW~~~P~~RPsF~eI~  756 (774)
T KOG1026|consen  722 ------------------QLLSCPENCPTEVYSLMLECWNENPKRRPSFKEIH  756 (774)
T ss_pred             ------------------CcccCCCCCCHHHHHHHHHHhhcCcccCCCHHHHH
Confidence                              12356788899999999999999999999999983

>KOG0662 consensus Cyclin-dependent kinase CDK5 [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.97  E-value=3e-31  Score=210.83  Aligned_cols=254  Identities=22%  Similarity=0.212  Sum_probs=184.0

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +++..||.|..+-+-.. .-.-.-.|+.=....  +.|.+++++.+..- ++..+-+|.|||...--..+-.-++.++..
T Consensus        25 ~t~eivalkrvrlddddegvpssalreicllke--lkhknivrl~dvlh-sdkkltlvfe~cdqdlkkyfdslng~~d~~  101 (292)
T KOG0662|consen   25 ETHEIVALKRVRLDDDDEGVPSSALREICLLKE--LKHKNIVRLHDVLH-SDKKLTLVFEFCDQDLKKYFDSLNGDLDPE  101 (292)
T ss_pred             CccceEEEEEEeccCCCCCCcHHHHHHHHHHHH--hhhcceeehhhhhc-cCceeEEeHHHhhHHHHHHHHhcCCcCCHH
Confidence            45556777766532211 111122233222222  35667888776654 355788999999864333333346678888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-CCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-YST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-~~~  170 (358)
                      .++.++.|++.|+.++|++.+.||    +|+|++.+|.+||+|||+|+..+-+   +...+-|.||++|.+++|.. |++
T Consensus       102 ~~rsfmlqllrgl~fchshnvlhrdlkpqnllin~ngelkladfglarafgipvrcysaevvtlwyrppdvlfgakly~t  181 (292)
T KOG0662|consen  102 IVRSFMLQLLRGLGFCHSHNVLHRDLKPQNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYST  181 (292)
T ss_pred             HHHHHHHHHHhhhhhhhhhhhhhccCCcceEEeccCCcEEecccchhhhcCCceEeeeceeeeeeccCcceeeeeehhcc
Confidence            899999999999999999999998    9999999999999999999876643   44557899999999999987 899


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ..|+||.|||+.|+.. |++.|.+..      ..+++..|++.+|.+.++.|.....-.          .......++..
T Consensus       182 sidmwsagcifaelanagrplfpg~d------vddqlkrif~~lg~p~ed~wps~t~lp----------dyk~yp~ypat  245 (292)
T KOG0662|consen  182 SIDMWSAGCIFAELANAGRPLFPGND------VDDQLKRIFRLLGTPTEDQWPSMTKLP----------DYKPYPIYPAT  245 (292)
T ss_pred             chHhhhcchHHHHHhhcCCCCCCCCc------HHHHHHHHHHHhCCCccccCCccccCC----------CCcccCCcccc
Confidence            9999999999999975 889998776      678999999999999877665432211          11111111111


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ....   ..-+.....-+||+.++|.-+|..|++|+++|+||||..
T Consensus       246 tsws---qivp~lns~grdllqkll~cnp~qrisaeaalqhpyf~d  288 (292)
T KOG0662|consen  246 TSWS---QIVPKLNSTGRDLLQKLLKCNPAQRISAEAALQHPYFSD  288 (292)
T ss_pred             chHH---HHhhhhcchhHHHHHHHhccCcccccCHHHHhcCccccc
Confidence            1111   112334556789999999999999999999999999986

>KOG4645 consensus MAPKKK (MAP kinase kinase kinase) SSK2 and related serine/threonine protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=8.7e-32  Score=266.48  Aligned_cols=208  Identities=23%  Similarity=0.287  Sum_probs=167.6

Q ss_pred             HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCC
Q 045353           40 KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSR  119 (358)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~  119 (358)
                      +-+.++.+....  ..|+++|+-+.++ ......||-||||+||+|.++++......+.....+..|+++|+.|+|.+||
T Consensus      1279 ~~i~eEm~vlE~--lnHpNlV~YyGVE-vHRekv~IFMEyC~~GsLa~ll~~gri~dE~vt~vyt~qll~gla~LH~~gI 1355 (1509)
T KOG4645|consen 1279 KLIAEEMKVLEG--LNHPNLVRYYGVE-VHREKVYIFMEYCEGGSLASLLEHGRIEDEMVTRVYTKQLLEGLAYLHEHGI 1355 (1509)
T ss_pred             cchHHHHHHHHh--ccCccccccCcee-ecHHHHHHHHHHhccCcHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHhcCc
Confidence            444555555544  4566777665544 3455789999999999999999998899999999999999999999999999


Q ss_pred             CCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCC---CCcchhhhhhhHHHHhhh
Q 045353          120 ATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSK---YSTSADLWSFACICFELA  185 (358)
Q Consensus       120 ~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~---~~~~~DiwSlGvil~ell  185 (358)
                      +||    +||+|+.+|.+|++|||.|......       .....||+.|||||++.|..   ..-+.||||||||+.||+
T Consensus      1356 VHRDIK~aNI~Ld~~g~iK~~DFGsa~ki~~~~~~~~~el~~~~GT~~YMAPEvit~t~~kG~~~A~DiWslGCVVlEM~ 1435 (1509)
T KOG4645|consen 1356 VHRDIKPANILLDFNGLIKYGDFGSAVKIKNNAQTMPGELQSMMGTPMYMAPEVITGTKGKGHGGAADIWSLGCVVLEMA 1435 (1509)
T ss_pred             eecCCCccceeeecCCcEEeecccceeEecCchhcCCHHHHhhcCCchhcCchhhcccccCCCCcchhhhcccceEEEee
Confidence            999    9999999999999999999775543       34558999999999999754   577899999999999999


Q ss_pred             cCCcccCCCCCCCCCCcHHHHHHHHHHh-CCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHH
Q 045353          186 TGDVLFDPHSGDNYDKDEDHLALMMELL-GMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAK  264 (358)
Q Consensus       186 ~g~~pf~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (358)
                      ||+.||...++        .++.|+.+- |.                                       ...+|..+++
T Consensus      1436 tGkrPW~~~dn--------e~aIMy~V~~gh---------------------------------------~Pq~P~~ls~ 1468 (1509)
T KOG4645|consen 1436 TGKRPWAELDN--------EWAIMYHVAAGH---------------------------------------KPQIPERLSS 1468 (1509)
T ss_pred             cCCCchhhccc--------hhHHHhHHhccC---------------------------------------CCCCchhhhH
Confidence            99999964321        122222221 11                                       1234556789


Q ss_pred             HHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          265 DMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       265 ~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      +..+||..||+.||++|+++.|+|.|-|-+.+.
T Consensus      1469 ~g~dFle~Cl~~dP~~Rw~~~qlle~~f~~~~~ 1501 (1509)
T KOG4645|consen 1469 EGRDFLEHCLEQDPKMRWTASQLLEHAFGKSCT 1501 (1509)
T ss_pred             hHHHHHHHHHhcCchhhhHHHHHHHhhcccccc
Confidence            999999999999999999999999999988754

>cd07844 STKc_PCTAIRE_like Catalytic domain of PCTAIRE-like Serine/Threonine Kinases

Probab=99.97  E-value=1.3e-30  Score=235.79  Aligned_cols=254  Identities=22%  Similarity=0.280  Sum_probs=180.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      +|..+++|.+...........+.++.+...+.  .|++++...+... .....|+||||+.+ +|.+++.. ...+.+..
T Consensus        29 ~~~~~~iK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~-~L~~~~~~~~~~~~~~~  104 (291)
T cd07844          29 TGQLVALKEIRLEHEEGAPFTAIREASLLKDL--KHANIVTLHDIIH-TKKTLTLVFEYLDT-DLKQYMDDCGGGLSMHN  104 (291)
T ss_pred             CCcEEEEEEEecccccCCchhHHHHHHHHhhC--CCcceeeEEEEEe-cCCeEEEEEecCCC-CHHHHHHhCCCCCCHHH
Confidence            56788999887665544445555666655553  5667776665544 44678999999986 88877654 34567888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-CCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-KYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   ......++..|+|||++.+. .++.+
T Consensus       105 ~~~~~~ql~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  184 (291)
T cd07844         105 VRLFLFQLLRGLAYCHQRRVLHRDLKPQNLLISERGELKLADFGLARAKSVPSKTYSNEVVTLWYRPPDVLLGSTEYSTS  184 (291)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecccCCHHHEEEcCCCCEEECccccccccCCCCccccccccccccCCcHHhhcCcccCcH
Confidence            99999999999999999999999    999999999999999999865432   12234578899999999874 48999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|+.||.+...     ..+.+..+.+.++.+....+........+......        ...... 
T Consensus       185 ~Dv~slG~il~~l~~g~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-  250 (291)
T cd07844         185 LDMWGVGCIFYEMATGRPLFPGSTD-----VEDQLHKIFRVLGTPTEETWPGVSSNPEFKPYSFP--------FYPPRP-  250 (291)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcc-----HHHHHHHHHHhcCCCChhhhhhhhhcccccccccc--------ccCChh-
Confidence            9999999999999999999964431     34566677777777665554332211111110000        000000 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ...... .......+.++|.+||+.||++|||+.++|+||||
T Consensus       251 ~~~~~~-~~~~~~~~~~li~~~L~~~p~~Rps~~e~l~~~~f  291 (291)
T cd07844         251 LINHAP-RLDRIPHGEELALKFLQYEPKKRISAAEAMKHPYF  291 (291)
T ss_pred             HHHhCc-CCCCchhHHHHHHHHhccCcccccCHHHHhcCCCC
Confidence            000000 01113678899999999999999999999999998

Serine/Threonine Kinases (STKs), PCTAIRE-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PCTAIRE-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily share sequence similarity with Cyclin-Dependent Kinases (CDKs), which belong to a large family of STKs that are regulated by their cognate cyclins. Together, CDKs and cyclins are involved in the control of cell-cycle progression, transcription, and neuronal function. The association of PCTAIRE-like proteins with cyclins has not been widely studied, although PFTAIRE-1 has been shown to function as a CDK which is regulated by cyclin D3 as well as the

>cd07835 STKc_CDK1_like Catalytic domain of Cyclin-Dependent protein Kinase 1-like Serine/Threonine Kinases

Probab=99.97  E-value=2e-30  Score=233.46  Aligned_cols=251  Identities=22%  Similarity=0.252  Sum_probs=180.5

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccC
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      .+|..+++|.+..... +.....+.++.+....  ..+++++....... .....|+||||++ ++|.+++....  .+.
T Consensus        22 ~~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~--l~~~~iv~~~~~~~-~~~~~~iv~e~~~-~~l~~~~~~~~~~~~~   97 (283)
T cd07835          22 LTGEIVALKKIRLETEDEGVPSTAIREISLLKE--LNHPNIVRLLDVVH-SENKLYLVFEFLD-LDLKKYMDSSPLTGLD   97 (283)
T ss_pred             CCCCEEEEEEeecccccccchhHHHHHHHHHHh--cCCCCccCHhheec-cCCeEEEEEeccC-cCHHHHHhhCCCCCCC
Confidence            3677889998765432 2333456666655554  34666666665544 3467899999995 58888876554  678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~  168 (358)
                      +..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||++.+. .+
T Consensus        98 ~~~~~~~~~~i~~~L~~lH~~~~~H~dl~p~nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~  177 (283)
T cd07835          98 PPLIKSYLYQLLQGIAYCHSHRVLHRDLKPQNLLIDREGALKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGSRQY  177 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCcEEEeecccccccCCCccccCccccccCCCCCceeecCccc
Confidence            89999999999999999999999988    9999999999999999999654322   2344678899999998775 47


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|.+||...+      +...+..+.+..+.+....+........+.......         ..
T Consensus       178 ~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  242 (283)
T cd07835         178 STPVDIWSIGCIFAEMVNRRPLFPGDS------EIDQLFRIFRTLGTPDEDVWPGVTSLPDYKPTFPKW---------AR  242 (283)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChHHhhhhhhchhhhhhcccc---------cc
Confidence            899999999999999999999997544      455566666666666554432221111111100000         00


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..    ........+..+.++|.+||+.||++|||++|++.||||
T Consensus       243 ~~----~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~  283 (283)
T cd07835         243 QD----LSKVVPNLDEDGLDLLSKMLVYDPAKRISAKAALQHPYF  283 (283)
T ss_pred             cc----hhhhcCCCCHHHHHHHHHHhcCChhhCcCHHHHhcCCCC
Confidence            00    001123446788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 1 (CDK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK1 from higher eukaryotes, plants, and yeasts, as well as CDK2 and CDK3. CDK1 is also called Cell division control protein 2 (Cdc2) or p34 protein kinase, and is regulated by cyclins A, B, and E. The CDK1/cyc

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=99.97  E-value=4.8e-31  Score=258.22  Aligned_cols=193  Identities=18%  Similarity=0.177  Sum_probs=154.9

Q ss_pred             ccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcE
Q 045353           58 AFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQC  133 (358)
Q Consensus        58 ~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~v  133 (358)
                      =|+.+.... .++..+|+||||+.||+|-.++.....+++.-++.|+..++.++.-+|..|.|||    +|||||..|++
T Consensus       136 Wiv~LhyAF-QD~~~LYlVMdY~pGGDlltLlSk~~~~pE~~ArFY~aEiVlAldslH~mgyVHRDiKPDNvLld~~GHi  214 (1317)
T KOG0612|consen  136 WIVQLHYAF-QDERYLYLVMDYMPGGDLLTLLSKFDRLPEDWARFYTAEIVLALDSLHSMGYVHRDIKPDNVLLDKSGHI  214 (1317)
T ss_pred             HHHHHHHHh-cCccceEEEEecccCchHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHhccceeccCCcceeEecccCcE
Confidence            344444333 3567899999999999999999988889999999999999999999999999999    99999999999


Q ss_pred             EEEecCCceecCCC----CCCCccCCCcchhHHHhC-----CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHH
Q 045353          134 KLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLG-----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDED  204 (358)
Q Consensus       134 kL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~-----~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~  204 (358)
                      ||+|||.|-.+...    ....+|||-|.+||+|..     +.|+..+|+||+||++|||+.|..||+..+      -.+
T Consensus       215 kLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~~~~g~yG~ecDwWSlGV~~YEMlyG~TPFYads------lve  288 (1317)
T KOG0612|consen  215 KLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQGDGKGEYGRECDWWSLGVFMYEMLYGETPFYADS------LVE  288 (1317)
T ss_pred             eeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhcCCccccCCccchhhhHHHHHHHHcCCCcchHHH------HHH
Confidence            99999999655422    445699999999999972     349999999999999999999999997443      111


Q ss_pred             HHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCC--hhhHHHHHHHHHhccccCCCCCC
Q 045353          205 HLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFN--ERDAKDMADFLVPILDFVPEKRP  282 (358)
Q Consensus       205 ~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~li~~~L~~dP~~R~  282 (358)
                      .-..|+..                                        ...+.||  ..+|.++.+||++++. +|+.|.
T Consensus       289 TY~KIm~h----------------------------------------k~~l~FP~~~~VSeeakdLI~~ll~-~~e~RL  327 (1317)
T KOG0612|consen  289 TYGKIMNH----------------------------------------KESLSFPDETDVSEEAKDLIEALLC-DREVRL  327 (1317)
T ss_pred             HHHHHhch----------------------------------------hhhcCCCcccccCHHHHHHHHHHhc-Chhhhc
Confidence            22222211                                        0012233  3468999999999776 799999


Q ss_pred             C---HHHHhcCcCcCCCCC
Q 045353          283 T---AAQCLSHPWMSAGPQ  298 (358)
Q Consensus       283 t---a~elL~hpwf~~~~~  298 (358)
                      .   ++++..||||.+..+
T Consensus       328 grngiedik~HpFF~g~~W  346 (1317)
T KOG0612|consen  328 GRNGIEDIKNHPFFEGIDW  346 (1317)
T ss_pred             ccccHHHHHhCccccCCCh
Confidence            8   999999999998654

>KOG0587 consensus Traf2- and Nck-interacting kinase and related germinal center kinase (GCK) family protein kinases [Signal transduction mechanisms]

Probab=99.97  E-value=4.1e-31  Score=253.09  Aligned_cols=231  Identities=19%  Similarity=0.228  Sum_probs=179.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC----CCCCCCCCcccccCCCCCccccccc--c
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS----KPSSPDNFSVDTIPNGVSVEERQND--S   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~iv~e~~~gg~L~~~~~~--~   92 (358)
                      ..+|.-+|+|.+.-+...+..-.+.-+.  ..-.+ .|++.+..+...    ...++.+|+|||||.|||..|++..  .
T Consensus        41 ~~~~~~aa~kI~~~~~d~deEiE~eyni--l~~~~-~hpnv~~fyg~~~k~~~~~~DqLWLVMEfC~gGSVTDLVKn~~g  117 (953)
T KOG0587|consen   41 VKTGQLAAIKIMDPTEDEEEEIELEYNM--LKKYS-HHPNVATFYGAFIKKDPGNGDQLWLVMEFCGGGSVTDLVKNTKG  117 (953)
T ss_pred             eecCceeeeEeecCCccccHHHHHHHHH--HHhcc-CCCCcceEEEEEEEecCCCCCeEEEEeeccCCccHHHHHhhhcc
Confidence            3456667777777766655544443332  22222 444444444332    3556899999999999999998874  3


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..+.+..|+.+++.++.|+.++|.+++|||    .|||++.++.|||+|||++.....   ...+.+|||.|||||++..
T Consensus       118 ~rl~E~~IaYI~re~lrgl~HLH~nkviHRDikG~NiLLT~e~~VKLvDFGvSaQldsT~grRnT~iGtP~WMAPEViac  197 (953)
T KOG0587|consen  118 NRLKEEWIAYILREILRGLAHLHNNKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDSTVGRRNTFIGTPYWMAPEVIAC  197 (953)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhcceeeecccCceEEEeccCcEEEeeeeeeeeeecccccccCcCCCcccccceeeec
Confidence            467889999999999999999999999999    899999999999999999976543   3567799999999999975


Q ss_pred             C-----CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          166 S-----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       166 ~-----~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .     .|+..+|+||||++..||..|.+|+.         +......++.+-..||+..                    
T Consensus       198 ~e~~d~tyd~R~D~WsLGITaIEladG~PPl~---------DmHPmraLF~IpRNPPPkL--------------------  248 (953)
T KOG0587|consen  198 DESPDATYDYRSDLWSLGITAIEMAEGAPPLC---------DMHPMRALFLIPRNPPPKL--------------------  248 (953)
T ss_pred             ccCCCCCcccccchhhccceeehhcCCCCCcc---------CcchhhhhccCCCCCCccc--------------------
Confidence            3     38889999999999999999999985         4444555555555554422                    


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                      .-+..-+++|.+||..||..|-++||+..++|+|||++..+
T Consensus       249 ----------------krp~kWs~~FndFIs~cL~Kd~e~RP~~~~ll~hpFi~e~~  289 (953)
T KOG0587|consen  249 ----------------KRPKKWSKKFNDFISTCLVKDYEQRPSTEELLKHPFITEQP  289 (953)
T ss_pred             ----------------cchhhHHHHHHHHHHHHHhhccccCcchhhhccCCcccccc
Confidence                            22344478999999999999999999999999999999543

>cd06610 STKc_OSR1_SPAK Catalytic domain of the Protein Serine/Threonine Kinases, Oxidative stress response kinase and Ste20-related proline alanine-rich kinase

Probab=99.97  E-value=7.6e-31  Score=233.89  Aligned_cols=229  Identities=20%  Similarity=0.224  Sum_probs=171.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---cccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---~~~~   96 (358)
                      .++..+++|++...-....-+.+.++.+.....  .+.+++...... ......|+||||++|++|.+++...   ..+.
T Consensus        24 ~~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~-~~~~~~~iv~e~~~~~~l~~~~~~~~~~~~~~  100 (267)
T cd06610          24 PNNEKVAIKRIDLEKCQTSVDELRKEVQAMSQC--NHPNVVKYYTSF-VVGDELWLVMPYLSGGSLLDIMKSSYPRGGLD  100 (267)
T ss_pred             CCCcEEEEEEeccCCcchHHHHHHHHHHHHHhc--CCCCEEEEEEEE-eeCCEEEEEEeccCCCcHHHHHHHhcccCCCC
Confidence            366788999987655555667777777765553  455555554333 2346789999999999999998653   4578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~  165 (358)
                      +..+..++.+++.++.++|+.+++|+    +||++++++.++|+|||++......       ....+|+..|+|||++..
T Consensus       101 ~~~~~~~~~ql~~al~~lh~~~i~h~~l~p~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~  180 (267)
T cd06610         101 EAIIATVLKEVLKGLEYLHSNGQIHRDIKAGNILLGEDGSVKIADFGVSASLADGGDRTRKVRKTFVGTPCWMAPEVMEQ  180 (267)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccchHHHhccCccccccccccccCChhhcChHHHcc
Confidence            88999999999999999999999999    9999999999999999998654322       123368999999999987


Q ss_pred             C-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 S-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      . .++.++|+|||||++|+|++|..||...+.      ..   .+.+.....+....                       
T Consensus       181 ~~~~~~~~Dv~slG~i~~~l~~g~~p~~~~~~------~~---~~~~~~~~~~~~~~-----------------------  228 (267)
T cd06610         181 VHGYDFKADIWSFGITAIELATGAAPYSKYPP------MK---VLMLTLQNDPPSLE-----------------------  228 (267)
T ss_pred             ccCcCcccchHhHhHHHHHHHhCCCCccccCh------hh---hHHHHhcCCCCCcC-----------------------
Confidence            7 689999999999999999999999964431      11   11111111110000                       


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                ........+..+.+|+.+||..||++|||+.++++||||
T Consensus       229 ----------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~ll~~p~~  267 (267)
T cd06610         229 ----------TGADYKKYSKSFRKMISLCLQKDPSKRPTAEELLKHKFF  267 (267)
T ss_pred             ----------CccccccccHHHHHHHHHHcCCChhhCcCHHHHhhCCCC
Confidence                      000012346788999999999999999999999999998

Serine/threonine kinases (STKs), oxidative stress response kinase (OSR1) and Ste20-related proline alanine-rich kinase (SPAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The OSR1 and SPAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SPAK is also referred to as STK39 or PASK (proline-alanine-rich STE20-related kinase). OSR1 and SPAK regulate the activity of cation-chloride cotransporters through direct interaction and phosphorylation. They are also implicated in cytoskeletal rearrangement, cell differentiation, transformation and proliferation. OSR1

>cd05576 STKc_RPK118_like Catalytic domain of the Protein Serine/Threonine Kinases, RPK118 and similar proteins

Probab=99.97  E-value=3.1e-31  Score=232.82  Aligned_cols=213  Identities=18%  Similarity=0.163  Sum_probs=162.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+.....      ..++......  ..+++++........ ....|+||||++||+|.+++.....+++..
T Consensus        16 ~~~~~~~~K~i~~~~~------~~~~~~~~~~--~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~   86 (237)
T cd05576          16 RTQQTFILKGLRKSSE------YSRERLTIIP--HCVPNMVCLHKYIVS-EDSVFLVLQHAEGGKLWSHISKFLNIPEEC   86 (237)
T ss_pred             cCCcEEEEEeecchhh------hhhHHHHHHh--cCCCceeehhhheec-CCeEEEEEecCCCCCHHHHHHHhcCCCHHH
Confidence            4556678887765321      1122222222  235666666554433 457899999999999999887666688899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhh
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLW  175 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Diw  175 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||.+...........++..|+|||.+.+..++.++|+|
T Consensus        87 ~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~df~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dvw  166 (237)
T cd05576          87 VKRWAAEMVVALDALHREGIVCRDLNPNNILLDDRGHIQLTYFSRWSEVEDSCDGEAVENMYCAPEVGGISEETEACDWW  166 (237)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEecccchhccccccccCCcCccccCCcccCCCCCCchhhHH
Confidence            99999999999999999999998    99999999999999999887666555556778889999999888899999999


Q ss_pred             hhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhh
Q 045353          176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEK  255 (358)
Q Consensus       176 SlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (358)
                      |+||++|+|++|..||........              .                                      ...
T Consensus       167 slG~il~el~~g~~~~~~~~~~~~--------------~--------------------------------------~~~  194 (237)
T cd05576         167 SLGAILFELLTGKTLVECHPSGIN--------------T--------------------------------------HTT  194 (237)
T ss_pred             HHHHHHHHHHHCcchhhcCchhcc--------------c--------------------------------------ccc
Confidence            999999999999988742210000              0                                      000


Q ss_pred             hcCChhhHHHHHHHHHhccccCCCCCCCH-----HHHhcCcCc
Q 045353          256 YDFNERDAKDMADFLVPILDFVPEKRPTA-----AQCLSHPWM  293 (358)
Q Consensus       256 ~~~~~~~~~~~~~li~~~L~~dP~~R~ta-----~elL~hpwf  293 (358)
                      ...+...+..+.+||.+||+.||++|+|+     +++++||||
T Consensus       195 ~~~~~~~~~~~~~li~~~l~~dp~~R~~~~~~~~~~~~~h~~~  237 (237)
T cd05576         195 LNIPEWVSEEARSLLQQLLQFNPTERLGAGVAGVEDIKSHPFF  237 (237)
T ss_pred             cCCcccCCHHHHHHHHHHccCCHHHhcCCCccchHHHHcCCCC
Confidence            12233456788999999999999999996     999999998

Serine/Threonine Kinases (STKs), RPK118-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The RPK118-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily show similarity to human RPK118, which contains an N-terminal Phox homology (PX) domain, a Microtubule Interacting and Trafficking (MIT) domain, and a kinase domain containing a long insert. Also included in the family is human RPK60 (or ribosomal protein S6 kinase-like 1), which also contains MIT and kinase domains but lacks a PX domain. RPK118 binds sphingosine kinase, a key enzyme in the synthesis of sphingosine 1-phospha

>cd06658 STKc_PAK5 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 5

Probab=99.97  E-value=1.6e-30  Score=235.42  Aligned_cols=231  Identities=16%  Similarity=0.176  Sum_probs=170.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .++..+++|.+.... ......+.++......  ..+.+++....... .....|+||||++|++|.+++.. ..+.+.+
T Consensus        45 ~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~--l~h~~ii~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~l~~~~  119 (292)
T cd06658          45 HTGKQVAVKKMDLRK-QQRRELLFNEVVIMRD--YHHENVVDMYNSYL-VGDELWVVMEFLEGGALTDIVTH-TRMNEEQ  119 (292)
T ss_pred             CCCCEEEEEEEecch-HHHHHHHHHHHHHHHh--CCCCcHHHHHHhee-cCCeEEEEEeCCCCCcHHHHHhc-CCCCHHH
Confidence            356678888775433 2334445556554444  35666666555433 34578999999999999998754 3467888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|+..|+|||++.+..++.++
T Consensus       120 ~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  199 (292)
T cd06658         120 IATVCLSVLRALSYLHNQGVIHRDIKSDSILLTSDGRIKLSDFGFCAQVSKEVPKRKSLVGTPYWMAPEVISRLPYGTEV  199 (292)
T ss_pred             HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCEEEccCcchhhcccccccCceeecCccccCHHHHccCCCCchh
Confidence            99999999999999999999999    8999999999999999998654322   2334789999999999888899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||+||++|+|++|..||....      ....+..+...+...                                    
T Consensus       200 Dv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~~~~~~------------------------------------  237 (292)
T cd06658         200 DIWSLGIMVIEMIDGEPPYFNEP------PLQAMRRIRDNLPPR------------------------------------  237 (292)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcCCCc------------------------------------
Confidence            99999999999999999996432      122222211111000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                         .......+..+.+||.+||..||.+|||++++++||||.....+.
T Consensus       238 ---~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~il~~~~~~~~~~~~  282 (292)
T cd06658         238 ---VKDSHKVSSVLRGFLDLMLVREPSQRATAQELLQHPFLKLAGPPS  282 (292)
T ss_pred             ---cccccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhhccCCcc
Confidence               001112356788999999999999999999999999999754433

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 5, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK5 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK5 is mainly express

>PTZ00266 NIMA-related protein kinase; Provisional

Probab=99.97  E-value=1.1e-30  Score=261.69  Aligned_cols=227  Identities=16%  Similarity=0.197  Sum_probs=169.6

Q ss_pred             cCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc----ccc
Q 045353           21 SSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND----SVV   94 (358)
Q Consensus        21 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~----~~~   94 (358)
                      ++..+|+|.+.. .+.......+.+++....+  +.+++++.+..... .....+|||||||.+|+|.+++..    ...
T Consensus        37 tg~~vAlKvIk~~~l~e~~~~~~~~EI~IL~~--L~HPNIVrl~d~f~de~~~~lyIVMEY~~gGSL~~lL~k~~~~~g~  114 (1021)
T PTZ00266         37 TQEFFCWKAISYRGLKEREKSQLVIEVNVMRE--LKHKNIVRYIDRFLNKANQKLYILMEFCDAGDLSRNIQKCYKMFGK  114 (1021)
T ss_pred             CCeEEEEEEEeccccCHHHHHHHHHHHHHHHH--cCCCCcCeEEEEEEecCCCEEEEEEeCCCCCcHHHHHHHHhhccCC
Confidence            455677887764 3455566777778777766  45777777765432 234568999999999999998864    245


Q ss_pred             cChhhhhHHHHhhhhccccccCCC-------CCCc----ccccccC-----------------CCcEEEEecCCceecCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPS-------RATR----KNLLAAV-----------------DVQCKLVDFGNACWTHK  146 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~-------~~hr----~NILl~~-----------------~~~vkL~DFG~a~~~~~  146 (358)
                      +.+..+..++.|++.++.|+|..+       |+|+    +||||+.                 .+.+||+|||++.....
T Consensus       115 L~E~~Il~Ia~QIL~ALaYLHs~g~~~~~k~IVHRDLKPeNILL~s~~~~lg~i~~~~~n~ng~~iVKLsDFGlAr~l~~  194 (1021)
T PTZ00266        115 IEEHAIVDITRQLLHALAYCHNLKDGPNGERVLHRDLKPQNIFLSTGIRHIGKITAQANNLNGRPIAKIGDFGLSKNIGI  194 (1021)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcccccccCCceeccCcHHHeEeecCccccccccccccccCCCCceEEccCCccccccc
Confidence            788899999999999999999854       8898    9999964                 34589999999976542


Q ss_pred             C--CCCCccCCCcchhHHHhCC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          147 Q--FTNDIQTRQYRCPEVLLGS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       147 ~--~~~~~gt~~Y~aPE~l~~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                      .  ....+||+.|+|||++.+.  .++.++||||||||||+|++|..||....      ....+..   .+...|.    
T Consensus       195 ~s~~~s~vGTp~YmAPEvL~ge~~~~s~KSDVWSLG~ILYELLTGk~PF~~~~------~~~qli~---~lk~~p~----  261 (1021)
T PTZ00266        195 ESMAHSCVGTPYYWSPELLLHETKSYDDKSDMWALGCIIYELCSGKTPFHKAN------NFSQLIS---ELKRGPD----  261 (1021)
T ss_pred             cccccccCCCccccCHHHHhccCCCCCchhHHHHHHHHHHHHHHCCCCCCcCC------cHHHHHH---HHhcCCC----
Confidence            2  3445799999999999764  48999999999999999999999996433      1222111   1111100    


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                                        ......+..+.+||..||..+|.+|||+.|+|+||||...
T Consensus       262 ----------------------------------lpi~~~S~eL~dLI~~~L~~dPeeRPSa~QlL~h~~ik~i  301 (1021)
T PTZ00266        262 ----------------------------------LPIKGKSKELNILIKNLLNLSAKERPSALQCLGYQIIKNV  301 (1021)
T ss_pred             ----------------------------------CCcCCCCHHHHHHHHHHhcCChhHCcCHHHHhccHHHhhc
Confidence                                              0011235778999999999999999999999999999753

>cd08529 STKc_FA2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii FA2 and similar domains

Probab=99.97  E-value=2.8e-30  Score=228.85  Aligned_cols=224  Identities=15%  Similarity=0.164  Sum_probs=170.7

Q ss_pred             ccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           20 ESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .+|..+++|.+.. .+.......+.++.+....  +.|++++....... .....|+||||++|++|.+++...  ..+.
T Consensus        23 ~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   99 (256)
T cd08529          23 ADKRVYAMKQIDLSKMNRREREEAIDEARVLAK--LDSSYIIRYYESFL-DKGKLNIVMEYAENGDLHKLLKMQRGRPLP   99 (256)
T ss_pred             CCCcEEEEEEeehhhCCHHHHHHHHHHHHHHHh--cCCCCeehheeeec-cCCEEEEEEEeCCCCcHHHHHHHhcCCCCC
Confidence            4567788887654 3444555666666665554  35666666554433 346789999999999999988753  4567


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....|++.|+|||++.+..++
T Consensus       100 ~~~~~~i~~~l~~al~~lH~~~i~h~dl~~~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (256)
T cd08529         100 EDQVWRFFIQILLGLAHLHSKKILHRDIKSLNLFLDAYDNVKIGDLGVAKLLSDNTNFANTIVGTPYYLSPELCEDKPYN  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEeCCCCEEEcccccceeccCccchhhccccCccccCHHHhcCCCCC
Confidence            78888999999999999999999988    9999999999999999998765432   2334788999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+|||||++++|++|+.||...+      .......+..  +..+                                
T Consensus       180 ~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~--------------------------------  219 (256)
T cd08529         180 EKSDVWALGVVLYECCTGKHPFDANN------QGALILKIIR--GVFP--------------------------------  219 (256)
T ss_pred             CccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHc--CCCC--------------------------------
Confidence            99999999999999999999996443      1222211111  0000                                


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                             ..+...+..+.++|.+||+.+|++||++.++++|||+
T Consensus       220 -------~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  256 (256)
T cd08529         220 -------PVSQMYSQQLAQLIDQCLTKDYRQRPDTFQLLRNPSL  256 (256)
T ss_pred             -------CCccccCHHHHHHHHHHccCCcccCcCHHHHhhCCCC
Confidence                   1112345788999999999999999999999999995

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii FA2-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii FA2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes FA2 and CNK4. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii FA2 was discovered in a genetic screen for deflagellation-defective mutants. It is essential for basal-body/centriole-associated microtubule severing, and plays a role in cell cyc

>cd06655 STKc_PAK2 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 2

Probab=99.97  E-value=1.9e-30  Score=235.44  Aligned_cols=229  Identities=18%  Similarity=0.222  Sum_probs=172.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+.... ......+.++.+....  ..|++++....... .....|+||||+.||+|..++... .+++.+
T Consensus        42 ~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~-~l~~~~  116 (296)
T cd06655          42 ATGQEVAIKQINLQK-QPKKELIINEILVMKE--LKNPNIVNFLDSFL-VGDELFVVMEYLAGGSLTDVVTET-CMDEAQ  116 (296)
T ss_pred             CCCcEEEEEEEeccc-CchHHHHHHHHHHHHh--cCCCceeeeeeeEe-cCceEEEEEEecCCCcHHHHHHhc-CCCHHH
Confidence            466788888776432 2334556666555554  35666666655433 346789999999999999988654 478899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|+..|+|||.+.+..++.++
T Consensus       117 ~~~i~~~l~~al~~LH~~~i~H~dL~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  196 (296)
T cd06655         117 IAAVCRECLQALEFLHANQVIHRDIKSDNVLLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV  196 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccchhcccccccCCCcCCCccccCcchhcCCCCCchh
Confidence            99999999999999999999988    9999999999999999998654322   2334788999999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|..||.+..      ....+..+.. .+.+                                    
T Consensus       197 Dv~slGvil~~lltg~~pf~~~~------~~~~~~~~~~-~~~~------------------------------------  233 (296)
T cd06655         197 DIWSLGIMAIEMVEGEPPYLNEN------PLRALYLIAT-NGTP------------------------------------  233 (296)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh-cCCc------------------------------------
Confidence            99999999999999999996543      1111111110 0000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                        ....+...++.+.+||.+||..||.+|||+.++++||||+....
T Consensus       234 --~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~il~~~~~~~~~~  277 (296)
T cd06655         234 --ELQNPEKLSPIFRDFLNRCLEMDVEKRGSAKELLQHPFLKLAKP  277 (296)
T ss_pred             --ccCCcccCCHHHHHHHHHHhhcChhhCCCHHHHhhChHhhhccc
Confidence              01112334678889999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 2, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK2 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd06654 STKc_PAK1 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 1

Probab=99.97  E-value=1.2e-30  Score=236.69  Aligned_cols=227  Identities=18%  Similarity=0.210  Sum_probs=171.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+......+ ...+.++.+....  ..|.+++....... .....|+||||+.||+|.+++.. ..+...+
T Consensus        43 ~~~~~v~ik~~~~~~~~~-~~~~~~e~~~l~~--~~h~~v~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~  117 (296)
T cd06654          43 ATGQEVAIRQMNLQQQPK-KELIINEILVMRE--NKNPNIVNYLDSYL-VGDELWVVMEYLAGGSLTDVVTE-TCMDEGQ  117 (296)
T ss_pred             CCCcEEEEEEEecCCcch-HHHHHHHHHHHHh--CCCCCEeeEEEEEE-eCCEEEEeecccCCCCHHHHHHh-cCCCHHH
Confidence            466788888877655443 3556666655544  35666666654433 34578999999999999998854 3467888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....|++.|+|||.+.+..++.++
T Consensus       118 ~~~i~~ql~~aL~~LH~~gi~H~dLkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  197 (296)
T cd06654         118 IAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV  197 (296)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEECccccchhccccccccCcccCCccccCHHHHcCCCCCccc
Confidence            99999999999999999999999    9999999999999999998654322   2345789999999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|+.||.....      ...+..+.. .+.+                                    
T Consensus       198 Dv~s~Gvil~~l~~g~~pf~~~~~------~~~~~~~~~-~~~~------------------------------------  234 (296)
T cd06654         198 DIWSLGIMAIEMIEGEPPYLNENP------LRALYLIAT-NGTP------------------------------------  234 (296)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCCH------HHhHHHHhc-CCCC------------------------------------
Confidence            999999999999999999964431      111111100 0000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                        ....+...+..+.+||.+||..||++|||+.++++||||...
T Consensus       235 --~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~eil~~~~~~~~  276 (296)
T cd06654         235 --ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIA  276 (296)
T ss_pred             --CCCCccccCHHHHHHHHHHCcCCcccCcCHHHHhhChhhhcc
Confidence              001123345678899999999999999999999999999864

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 1, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK1 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>PTZ00024 cyclin-dependent protein kinase; Provisional

Probab=99.97  E-value=3.5e-30  Score=237.77  Aligned_cols=257  Identities=21%  Similarity=0.221  Sum_probs=183.6

Q ss_pred             cCcccccccccCccchhhh-------------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccc
Q 045353           21 SSASKENKSLYGDLTKNQK-------------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~   87 (358)
                      .|..+|+|.+.........             +.+.++.+...+  +.+.+++...+... .....++||||+. |+|.+
T Consensus        33 ~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~-~~l~~  108 (335)
T PTZ00024         33 TGKIVAIKKVKIIEISNDVTKDRQLVGMCGIHFTTLRELKIMNE--IKHENIMGLVDVYV-EGDFINLVMDIMA-SDLKK  108 (335)
T ss_pred             CCCeEEEEEeeccccccccccchhhhcccccchhHHHHHHHHHh--CCCcceeeeeEEEe-cCCcEEEEEeccc-cCHHH
Confidence            5667888887654333311             134445444444  35566666555433 3457899999998 58888


Q ss_pred             ccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-----------------C
Q 045353           88 RQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-----------------K  146 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-----------------~  146 (358)
                      ++.....+++..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++....                 .
T Consensus       109 ~l~~~~~~~~~~~~~~~~ql~~aL~~LH~~~i~H~dl~~~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~  188 (335)
T PTZ00024        109 VVDRKIRLTESQVKCILLQILNGLNVLHKWYFMHRDLSPANIFINSKGICKIADFGLARRYGYPPYSDTLSKDETMQRRE  188 (335)
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeecccccHHHeEECCCCCEEECCccceeecccccccccccccccccccc
Confidence            88777778899999999999999999999999999    99999999999999999986544                 1


Q ss_pred             CCCCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          147 QFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       147 ~~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                      ......+++.|+|||++.+.. ++.++|||||||++|+|++|.+||.+..      +.+.+..+...++.++...+....
T Consensus       189 ~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv~slG~~l~el~tg~~p~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~  262 (335)
T PTZ00024        189 EMTSKVVTLWYRAPELLMGAEKYHFAVDMWSVGCIFAELLTGKPLFPGEN------EIDQLGRIFELLGTPNEDNWPQAK  262 (335)
T ss_pred             cccccccccCCCCChhcccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCchhhCcchh
Confidence            122335688999999998754 7999999999999999999999997654      566777788888776654332211


Q ss_pred             CChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCC
Q 045353          226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE  301 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~  301 (358)
                      ....+.....         .. . .   .........+..+.+||.+||+.||++|||++++|.||||+..+....
T Consensus       263 ~~~~~~~~~~---------~~-~-~---~~~~~~~~~~~~~~~li~~~l~~~P~~R~s~~~~l~~~~~~~~~~~~~  324 (335)
T PTZ00024        263 KLPLYTEFTP---------RK-P-K---DLKTIFPNASDDAIDLLQSLLKLNPLERISAKEALKHEYFKSDPLPCD  324 (335)
T ss_pred             hcccccccCc---------CC-c-c---cHHHhCcCCChHHHHHHHHHcCCCchhccCHHHHhcCcccCCCCCCCC
Confidence            1100000000         00 0 0   000112234678899999999999999999999999999998655443

>cd06621 PKc_MAPKK_Pek1_like Catalytic domain of fungal Pek1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=4.5e-30  Score=231.90  Aligned_cols=238  Identities=19%  Similarity=0.217  Sum_probs=174.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc----cccc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND----SVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~----~~~~   95 (358)
                      ++..+++|.+..........++.++.+...+  ..|++++....... .....+|+||||++|++|.+++..    ...+
T Consensus        25 ~~~~~~~k~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~l  102 (287)
T cd06621          25 TGMIFALKTITTDPNPDLQKQILRELEINKS--CKSPYIVKYYGAFLDESSSSIGIAMEYCEGGSLDSIYKKVKKRGGRI  102 (287)
T ss_pred             CCeEEEEEEEecCCchHHHHHHHHHHHHHHh--CCCCCeeeeeeEEEccCCCeEEEEEEecCCCCHHHHHHHHHhcCCCC
Confidence            5667899988877666666777787776655  35777776654432 234568999999999999887542    3446


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCc
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..+..++.+++.++.|+|+.+++|+    +||+++.++.++|+|||++...... .....++..|+|||.+.+..++.
T Consensus       103 ~~~~~~~i~~~i~~~L~~lH~~~i~H~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~  182 (287)
T cd06621         103 GEKVLGKIAESVLKGLSYLHSRKIIHRDIKPSNILLTRKGQVKLCDFGVSGELVNSLAGTFTGTSFYMAPERIQGKPYSI  182 (287)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecCCeEEEeeccccccccccccccccCCccccCHHHhcCCCCCc
Confidence            778889999999999999999999999    9999999999999999998654332 23346788999999999888999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||...... .....+....+.   ........                             
T Consensus       183 ~~Dv~slG~il~~l~~g~~p~~~~~~~-~~~~~~~~~~~~---~~~~~~~~-----------------------------  229 (287)
T cd06621         183 TSDVWSLGLTLLEVAQNRFPFPPEGEP-PLGPIELLSYIV---NMPNPELK-----------------------------  229 (287)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCcccCC-CCChHHHHHHHh---cCCchhhc-----------------------------
Confidence            999999999999999999999755321 011111111111   10000000                             


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         .........++.+.+||.+||..||++|||+.|++.||||...
T Consensus       230 ---~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~eil~~~~~~~~  272 (287)
T cd06621         230 ---DEPGNGIKWSEEFKDFIKQCLEKDPTRRPTPWDMLEHPWIKAQ  272 (287)
T ss_pred             ---cCCCCCCchHHHHHHHHHHHcCCCcccCCCHHHHHhCcccccc
Confidence               0000001235678999999999999999999999999999753

Protein kinases (PKs), MAP kinase kinase(MAPKK) subfamily, fungal Pek1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06639 STKc_myosinIIIB Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIB myosin

Probab=99.97  E-value=1.8e-30  Score=234.81  Aligned_cols=227  Identities=19%  Similarity=0.188  Sum_probs=163.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC----CCCCCCcccccCCCCCccccccc----
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQND----   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~----   91 (358)
                      .+|..+++|.+.....  ....+.++......+ ..|++++........    .....|+||||++||+|.+++..    
T Consensus        45 ~~~~~~aik~~~~~~~--~~~~~~~e~~~l~~l-~~h~ni~~~~~~~~~~~~~~~~~~~lv~ey~~~~sL~~~~~~~~~~  121 (291)
T cd06639          45 KDGSLAAVKILDPISD--VDEEIEAEYNILQSL-PNHPNVVKFYGMFYKADKLVGGQLWLVLELCNGGSVTELVKGLLIC  121 (291)
T ss_pred             CCCCEEEEEEeccccc--HHHHHHHHHHHHHHh-cCCCCeEEEEEEEEeccccCCCeeEEEEEECCCCcHHHHHHHhhhc
Confidence            4567788888764321  123344444444333 255666665543322    23568999999999999987752    


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~  164 (358)
                      ...+.+..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++.....   ......|+..|+|||++.
T Consensus       122 ~~~~~~~~~~~~~~qi~~al~~lH~~~ivH~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  201 (291)
T cd06639         122 GQRLDEAMISYILYGALLGLQHLHNNRIIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIA  201 (291)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHEEEcCCCCEEEeecccchhcccccccccCccCCccccChhhhc
Confidence            3456788899999999999999999999998    999999999999999999865432   123457889999999986


Q ss_pred             CC-----CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          165 GS-----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       165 ~~-----~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ..     .++.++||||+||++|+|++|++||....      ....+   .++....+.                     
T Consensus       202 ~~~~~~~~~~~~~Di~slGvi~~el~~g~~p~~~~~------~~~~~---~~~~~~~~~---------------------  251 (291)
T cd06639         202 CEQQYDYSYDARCDVWSLGITAIELGDGDPPLFDMH------PVKTL---FKIPRNPPP---------------------  251 (291)
T ss_pred             CCCCcccccCCccchHHHHHHHHHHhhCCCCCCCCc------HHHHH---HHHhcCCCC---------------------
Confidence            53     26889999999999999999999996432      11111   111111100                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                     ....+...+..+.+||.+||+.||++|||+.++++||||+
T Consensus       252 ---------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~il~~~~~~  291 (291)
T cd06639         252 ---------------TLLHPEKWCRSFNHFISQCLIKDFEARPSVTHLLEHPFIK  291 (291)
T ss_pred             ---------------CCCcccccCHHHHHHHHHHhhcChhhCcCHHHHhcCcccC
Confidence                           0011222345789999999999999999999999999995

Serine/threonine kinases (STKs), class IIIB myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. They may also function as cargo carriers during light-dependent translocation, in photoreceptor cells, of proteins such as transducin and arrestin. Class IIIB myosin is expressed highly in retina. It is also pre

>cd06620 PKc_MAPKK_Byr1_like Catalytic domain of fungal Byr1-like dual-specificity MAP kinase kinases

Probab=99.97  E-value=3.6e-30  Score=232.09  Aligned_cols=237  Identities=18%  Similarity=0.153  Sum_probs=176.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+.........+.+.++.+....  ..+++++........ ....|+||||++||+|.+++.....+.+..
T Consensus        28 ~~~~~~a~k~~~~~~~~~~~~~~~~E~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  104 (284)
T cd06620          28 PTGTVMAKKVVHIGAKSSVRKQILRELQIMHE--CRSPYIVSFYGAFLN-ENNICMCMEFMDCGSLDRIYKKGGPIPVEI  104 (284)
T ss_pred             CCCcEEEEEEEEecCcchHHHHHHHHHHHHHH--cCCCCcceEeeeEec-CCEEEEEEecCCCCCHHHHHHhccCCCHHH
Confidence            34667888888766656666777777776665  356666666655443 367899999999999999887766778889


Q ss_pred             hhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.|+|+ .+++|+    +||++++++.++|+|||++..... .....+|+..|+|||++.+..++.++|
T Consensus       105 ~~~~~~~i~~~l~~LH~~~~i~H~dl~p~nil~~~~~~~~l~d~gl~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~D  184 (284)
T cd06620         105 LGKIAVAVVEGLTYLYNVHRIMHRDIKPSNILVNSRGQIKLCDFGVSGELINSIADTFVGTSTYMSPERIQGGKYTVKSD  184 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhcCeeccCCCHHHEEECCCCcEEEccCCcccchhhhccCccccCcccCCHHHHccCCCCccch
Confidence            99999999999999996 588888    999999999999999999865432 223457899999999998888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCC--CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYD--KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      |||+||++|++++|..||.........  ........+..+....+                                  
T Consensus       185 i~slG~~l~~l~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------  230 (284)
T cd06620         185 VWSLGISIIELALGKFPFAFSNIDDDGQDDPMGILDLLQQIVQEPP----------------------------------  230 (284)
T ss_pred             HHHHHHHHHHHHhCCCCCcccchhhhhhhhhhHHHHHHHHHhhccC----------------------------------
Confidence            999999999999999999754421100  00011111111110000                                  


Q ss_pred             HHhhhcCC-hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          252 LVEKYDFN-ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       252 ~~~~~~~~-~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                          ..++ ...+..+.+|+.+||+.||++|||++|+++|+||....
T Consensus       231 ----~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~e~~~~~~~~~~~  273 (284)
T cd06620         231 ----PRLPSSDFPEDLRDFVDACLLKDPTERPTPQQLCAMPPFIQAL  273 (284)
T ss_pred             ----CCCCchhcCHHHHHHHHHHhcCCcccCcCHHHHhcCccccccc
Confidence                0011 12456789999999999999999999999999997643

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, fungal Byr1-like proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of this group include

>cd06630 STKc_MEKK1 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 1

Probab=99.97  E-value=3.4e-30  Score=230.03  Aligned_cols=230  Identities=20%  Similarity=0.254  Sum_probs=172.0

Q ss_pred             cccCcccccccccCccch-----hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDLTK-----NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..+++|.+......     ...+.++++.+....  +.+++++....... .....++||||+.|++|.+++....
T Consensus        22 ~~~~~~~alk~~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~~v~e~~~~~~L~~~l~~~~   98 (268)
T cd06630          22 VKTGTLMAVKQVTYVRNTSSEQEEVVEALRKEIRLMAR--LNHPHIIRMLGATC-EDSHFNLFVEWMAGGSVSHLLSKYG   98 (268)
T ss_pred             cCCCcEEEEEEeecccCCchhHHHHHHHHHHHHHHHHH--cCCCceehhhceec-cCCeEEEEEeccCCCcHHHHHHHhC
Confidence            356778888887643321     123556666666555  35666666665543 3457899999999999999987767


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCCC-------CCCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE  161 (358)
                      .+++..+..++.+++.++.++|+.+++|+    +||+++.++ .+||+|||++......       .....||..|+|||
T Consensus        99 ~~~~~~~~~~~~ql~~al~~LH~~~i~H~~i~~~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~PE  178 (268)
T cd06630          99 AFKEAVIINYTEQLLRGLSYLHENQIIHRDVKGANLLIDSTGQRLRIADFGAAARLAAKGTGAGEFQGQLLGTIAFMAPE  178 (268)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEcccccccccccccccCCccccccccccceeCHh
Confidence            77888999999999999999999999998    999998776 5899999998654322       12346788999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..++.++|+||+||++++|++|..||......      .....+.+....                          
T Consensus       179 ~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~~~------~~~~~~~~~~~~--------------------------  226 (268)
T cd06630         179 VLRGEQYGRSCDVWSVGCVIIEMATAKPPWNAEKHS------NHLALIFKIASA--------------------------  226 (268)
T ss_pred             HhccCCCCcccchHHHHHHHHHHHhCCCCCCCCCCc------chHHHHHHHhcc--------------------------
Confidence            999888999999999999999999999999643211      111111111000                          


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                 ......+...++.+.+++.+||..||++|||+.++++||||+
T Consensus       227 -----------~~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~ll~~~~~~  268 (268)
T cd06630         227 -----------TTAPSIPEHLSPGLRDVTLRCLELQPEDRPPSRELLKHPVFR  268 (268)
T ss_pred             -----------CCCCCCchhhCHHHHHHHHHHcCCCcccCcCHHHHhcCcccC
Confidence                       001123344578899999999999999999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 1 (MEKK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK1 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK1 activates the extracellular signal-regulated kinase 1/2 (ERK1/2) and c-Jun N-terminal kinase (JNK) pathways by activating their

>cd06611 STKc_SLK_like Catalytic domain of Ste20-like kinase-like Protein Serine/Threonine Kinases

Probab=99.97  E-value=1.5e-30  Score=233.99  Aligned_cols=228  Identities=19%  Similarity=0.206  Sum_probs=170.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .++..+++|+.... .......+.++.+....+  .|++++....... .....|+||||++||+|.+++... ..+++.
T Consensus        28 ~~~~~~~iK~~~~~-~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~l~~~  103 (280)
T cd06611          28 ETGLFAAAKIIQIE-SEEELEDFMVEIDILSEC--KHPNIVGLYEAYF-YENKLWILIEFCDGGALDSIMLELERGLTEP  103 (280)
T ss_pred             CCCcEEEEEEEeeC-CHHHHHHHHHHHHHHHhC--CCCceeEEEEEEe-cCCeEEEEeeccCCCcHHHHHHHhcCCCCHH
Confidence            35778888988644 233345566666666553  4666766666544 355789999999999999988653 457888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhC-----C
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLG-----S  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~-----~  166 (358)
                      .+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.....   ......|++.|+|||++..     .
T Consensus       104 ~~~~~~~ql~~~l~~lh~~~i~h~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  183 (280)
T cd06611         104 QIRYVCRQMLEALNFLHSHKVIHRDLKAGNILLTLDGDVKLADFGVSAKNKSTLQKRDTFIGTPYWMAPEVVACETFKDN  183 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCChhhEEECCCCCEEEccCccchhhcccccccceeecchhhcCHHHHhhcccCCC
Confidence            999999999999999999999998    999999999999999999865432   2234478999999999863     3


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||....      ...   .+..+....+.                            
T Consensus       184 ~~~~~sDi~slG~il~~l~~g~~p~~~~~------~~~---~~~~~~~~~~~----------------------------  226 (280)
T cd06611         184 PYDYKADIWSLGITLIELAQMEPPHHELN------PMR---VLLKILKSEPP----------------------------  226 (280)
T ss_pred             CCCccccHHHHHHHHHHHHhCCCCcccCC------HHH---HHHHHhcCCCC----------------------------
Confidence            47889999999999999999999996432      111   11111111000                            


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ....+...+..+.+||.+||+.||.+|||+.++++||||...
T Consensus       227 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (280)
T cd06611         227 --------TLDQPSKWSSSFNDFLKSCLVKDPDDRPTAAELLKHPFVSDQ  268 (280)
T ss_pred             --------CcCCcccCCHHHHHHHHHHhccChhhCcCHHHHhcChhhccc
Confidence                    011123346688899999999999999999999999999853

Serine/threonine kinases (STKs), Ste20-like kinase (SLK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of the subfamily include SLK, STK10 (also called LOK for lymphocyte-oriented kinase), SmSLK (Schistosoma mansoni SLK), and related proteins. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It also plays a role in mediating actin reorganization. STK10 is responsible in regulating the CD28 responsive element in T cells, as well as leukocyte function associated anti

>cd06644 STKc_STK10_LOK Catalytic domain of the Protein Serine/Threonine Kinase, STK10 or Lymphocyte-oriented kinase

Probab=99.97  E-value=2.9e-30  Score=233.65  Aligned_cols=228  Identities=20%  Similarity=0.211  Sum_probs=168.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+++|.+... +....+.+.++.+....  ..+.+++...+... .+...|+||||++|++|..++.. ...+.+.
T Consensus        35 ~~~~~~~~k~~~~~-~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~  110 (292)
T cd06644          35 ETGALAAAKVIETK-SEEELEDYMVEIEILAT--CNHPYIVKLLGAFY-WDGKLWIMIEFCPGGAVDAIMLELDRGLTEP  110 (292)
T ss_pred             CCCceEEEEEeccC-CHHHHHHHHHHHHHHHh--CCCCcEeeeEEEEE-eCCeEEEEEecCCCCcHHHHHHhhcCCCCHH
Confidence            45677888888654 23334555666655554  35666666555433 34678999999999999887653 3457889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC-----C
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG-----S  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~-----~  166 (358)
                      .+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....+++.|+|||++.+     .
T Consensus       111 ~~~~~~~ql~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  190 (292)
T cd06644         111 QIQVICRQMLEALQYLHSMKIIHRDLKAGNVLLTLDGDIKLADFGVSAKNVKTLQRRDSFIGTPYWMAPEVVMCETMKDT  190 (292)
T ss_pred             HHHHHHHHHHHHHHHHhcCCeeecCCCcceEEEcCCCCEEEccCccceeccccccccceecCCccccCceeeccccccCC
Confidence            999999999999999999999988    9999999999999999998654322   233468899999999853     3


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|.+||...+      ....   +..+....++                            
T Consensus       191 ~~~~~~Dv~slG~il~el~~g~~p~~~~~------~~~~---~~~~~~~~~~----------------------------  233 (292)
T cd06644         191 PYDYKADIWSLGITLIEMAQIEPPHHELN------PMRV---LLKIAKSEPP----------------------------  233 (292)
T ss_pred             CCCchhhhHhHHHHHHHHhcCCCCCcccc------HHHH---HHHHhcCCCc----------------------------
Confidence            47889999999999999999999996432      1111   1111111100                            


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ....+...+.++.+||.+||..||++|||++++++||||...
T Consensus       234 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  275 (292)
T cd06644         234 --------TLSQPSKWSMEFRDFLKTALDKHPETRPSAAQLLEHPFVSSV  275 (292)
T ss_pred             --------cCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHhcCcccccc
Confidence                    001122345678899999999999999999999999999864

Serine/threonine kinases (STKs), STK10 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK10 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Other names for STK10 include lymphocyte-oriented kinase (LOK) and Xenopus polo-like kinase kinase 1 (xPlkk1). STK10 is highly expressed in lymphocytes and is responsible in regulating leukocyte function associated antigen (LFA-1)-mediated lymphocyte adhesion. It plays a role in regulating the CD28 responsive element in T cells, and may also function as a regulator of polo-like kinase 1 (Plk1), a protein which is overexpressed in multiple tumor types.

>cd07866 STKc_BUR1 Catalytic domain of the Serine/Threonine Kinase, Fungal Cyclin-Dependent protein Kinase Bypass UAS Requirement 1 and similar proteins

Probab=99.97  E-value=3.3e-30  Score=235.12  Aligned_cols=253  Identities=23%  Similarity=0.241  Sum_probs=175.0

Q ss_pred             cCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCC-------CCCCCCCcccccCCCCCcccccccc
Q 045353           21 SSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSK-------PSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      +|..+++|.+......+ .....+++.+....  +.|++++.......       .....+|+||||+.+..+..+....
T Consensus        32 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~~~~~~~~~~~~~~lv~~~~~~~l~~~~~~~~  109 (311)
T cd07866          32 TGRVVALKKILMHNEKDGFPITALREIKILKK--LKHPNVVPLIDMAVERPDKSKRKRGSVYMVTPYMDHDLSGLLENPS  109 (311)
T ss_pred             CCcEEEEEEEEeccCCCCcchhHHHHHHHHHh--cCCCCccchhhheecccccccccCceEEEEEecCCcCHHHHHhccc
Confidence            46678888776544332 23345556555544  35666666554432       2234579999999875433333345


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------CCCCccC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------FTNDIQT  154 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------~~~~~gt  154 (358)
                      ..+++..+..++.++++++.++|+.+++|+    +|||+++++.+||+|||++......              .+...++
T Consensus       110 ~~~~~~~~~~i~~~l~~al~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (311)
T cd07866         110 VKLTESQIKCYMLQLLEGINYLHENHILHRDIKAANILIDNQGILKIADFGLARPYDGPPPNPKGGGGGGTRKYTNLVVT  189 (311)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEECcCccchhccCCCcccccCCcccccccccceec
Confidence            578899999999999999999999999999    8999999999999999999654321              1233678


Q ss_pred             CCcchhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+. .++.++||||+||++|+|++|.+||.+.+      .......+....+.+++..+..+.........
T Consensus       190 ~~y~aPE~~~~~~~~~~~~Dv~slG~il~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (311)
T cd07866         190 RWYRPPELLLGERRYTTAVDIWGIGCVFAEMFTRRPILQGKS------DIDQLHLIFKLCGTPTEETWPGWRSLPGCEGV  263 (311)
T ss_pred             cCcCChHHhhCCCccCchhHhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhchhhhhccccccc
Confidence            899999998775 48999999999999999999999997655      45667777777777665443221111100000


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..      ...   .......   ......+.+.+||.+||..||++|||+.+++.||||
T Consensus       264 ~~------~~~---~~~~~~~---~~~~~~~~~~~~i~~~l~~~p~~R~t~~ell~~~~f  311 (311)
T cd07866         264 HS------FTN---YPRTLEE---RFGKLGPEGLDLLSKLLSLDPYKRLTASDALEHPYF  311 (311)
T ss_pred             cc------CCC---CCccHHH---HcccCChhHHHHHHHHcccCcccCcCHHHHhcCCCC
Confidence            00      000   0000000   011234678899999999999999999999999998

Serine/Threonine Kinases (STKs), Bypass UAS Requirement 1 (BUR1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The BUR1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. BUR1, also called SGV1, is a yeast Cyclin-Dependent protein Kinase (CDK) that is functionally equivalent to mammalian CDK9. It associates with the cyclin BUR2. BUR genes were orginally identified in a genetic

>cd07877 STKc_p38alpha_MAPK14 Catalytic domain of the Serine/Threonine Kinase, p38alpha Mitogen-Activated Protein Kinase

Probab=99.97  E-value=1.4e-29  Score=234.70  Aligned_cols=257  Identities=23%  Similarity=0.281  Sum_probs=182.6

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..+|+|.+...... ....++.++......  +.|++++........     .....|++++++ |++|.+++... 
T Consensus        40 ~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~lv~~~~-~~~L~~~~~~~-  115 (345)
T cd07877          40 KTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKH--MKHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKCQ-  115 (345)
T ss_pred             CCCeEEEEEEecCcchhhHHHHHHHHHHHHHHH--cCCCcccceeeeeeecccccccccEEEEehhc-ccCHHHHHhcC-
Confidence            46778899988765422 234455555554444  356666665544321     224568888887 78888776543 


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKY  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~  168 (358)
                      .+.+..+..++.|++.|+.++|+.+++|+    +||++++++.+||+|||++...........|+..|+|||++.+ ..+
T Consensus       116 ~l~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  195 (345)
T cd07877         116 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY  195 (345)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChHHEEEcCCCCEEEecccccccccccccccccCCCccCHHHHhCccCC
Confidence            47788899999999999999999999999    9999999999999999999876665566688999999999887 458


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|++||....      ....+..+.+..+.++.............       .........+.
T Consensus       196 ~~~~DvwslG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~  262 (345)
T cd07877         196 NQTVDIWSVGCIMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESAR-------NYIQSLTQMPK  262 (345)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHhhcccHhHH-------HHHHHhcccCC
Confidence            899999999999999999999996543      45566677777777666554332211000       00000000000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ...    .......++.+.+||.+||+.||.+|+|+.++++||||....
T Consensus       263 ~~~----~~~~~~~~~~~~~li~~~L~~dp~~R~t~~e~l~h~~f~~~~  307 (345)
T cd07877         263 MNF----ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYH  307 (345)
T ss_pred             cch----hhhcCCCCHHHHHHHHHHcCCChhhcCCHHHHhcChhhhhcC
Confidence            000    000112467789999999999999999999999999998643

Serine/Threonine Kinases (STKs), p38alpha subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38alpha subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38alpha, also called MAPK14

>cd06643 STKc_SLK Catalytic domain of the Protein Serine/Threonine Kinase, Ste20-like kinase

Probab=99.97  E-value=3e-30  Score=232.33  Aligned_cols=227  Identities=18%  Similarity=0.169  Sum_probs=166.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      ++..+++|.+.... ......+.++.+....  ..+++++....... .....|+||||+.||+|..++.. ...+++..
T Consensus        29 ~~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~--l~h~~ii~~~~~~~-~~~~~~~v~e~~~~~~l~~~~~~~~~~l~~~~  104 (282)
T cd06643          29 TGVLAAAKVIDTKS-EEELEDYMVEIDILAS--CDHPNIVKLLDAFY-YENNLWILIEFCAGGAVDAVMLELERPLTEPQ  104 (282)
T ss_pred             CCeEEEEEEeCCCC-HHHHHHHHHHHHHHHH--CCCCCeeeEEEEEe-eCCEEEEEEEecCCCcHHHHHHhcCCCCCHHH
Confidence            45566777775432 2233445555554444  35666666655433 34578999999999999887653 44578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh-----CCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL-----GSK  167 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~-----~~~  167 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....|+..|+|||++.     +..
T Consensus       105 ~~~~~~qi~~~L~~LH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  184 (282)
T cd06643         105 IRVVCKQTLEALNYLHENKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRP  184 (282)
T ss_pred             HHHHHHHHHHHHHHHHHCCeeecCCCcccEEEccCCCEEEccccccccccccccccccccccccccCHhhccccCCCCCC
Confidence            99999999999999999999998    9999999999999999998654322   23457899999999985     344


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++||||+||++|+|++|.+||...+      .......+....  .+                              
T Consensus       185 ~~~~~Dv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~~~--~~------------------------------  226 (282)
T cd06643         185 YDYKADVWSLGITLIEMAQIEPPHHELN------PMRVLLKIAKSE--PP------------------------------  226 (282)
T ss_pred             CCccchhhhHHHHHHHHccCCCCccccC------HHHHHHHHhhcC--CC------------------------------
Confidence            7889999999999999999999996443      122222211110  00                              


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ....+...+..+.+||.+||+.||.+|||++++++||||...
T Consensus       227 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  268 (282)
T cd06643         227 -------TLAQPSRWSSEFKDFLKKCLEKNVDARWTTTQLLQHPFVTVN  268 (282)
T ss_pred             -------CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCCCEecc
Confidence                   001122335688999999999999999999999999999864

Serine/threonine kinases (STKs), Ste20-like kinase (SLK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The SLK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. SLK promotes apoptosis through apoptosis signal-regulating kinase 1 (ASK1) and the mitogen-activated protein kinase (MAPK) p38. It acts as a MAPK kinase kinase (MAPKKK) by phosphorylating ASK1, resulting in the phosphorylation of p38. SLK also plays a role in mediating actin reorganization. It is part of a microtubule-associated complex that is targeted at adhesion sites, and is required in focal adhesion turnover and in regulating cell migration.

>cd07830 STKc_MAK_like Catalytic domain of Male germ cell-Associated Kinase-like Serine/Threonine Kinases

Probab=99.97  E-value=3.2e-30  Score=232.10  Aligned_cols=252  Identities=23%  Similarity=0.277  Sum_probs=179.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~~   98 (358)
                      ++..+++|.+.............++....... .++.+++........ ....|+||||+ +|+|.+++....  .+.+.
T Consensus        23 ~~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~-~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~l~~~~~~~~~~~~~~~   99 (283)
T cd07830          23 TGELVAIKKMKKKFYSWEECMNLREVKSLRKL-NEHPNIVKLKEVFRE-NDELYFVFEYM-EGNLYQLMKDRKGKPFSES   99 (283)
T ss_pred             CCcEEEEEEehhhccchhHHHHHHHHHHHHhc-cCCCCchhHHHHhhc-CCcEEEEEecC-CCCHHHHHHhcccccCCHH
Confidence            46678999887765543333333444444433 225666665554433 67889999999 788888776544  67888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCC-CCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGS-KYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~-~~~~~  171 (358)
                      ++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.....  ......++..|+|||++.+. .++.+
T Consensus       100 ~~~~~~~~l~~~l~~Lh~~~i~H~dl~~~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~~  179 (283)
T cd07830         100 VIRSIIYQILQGLAHIHKHGFFHRDLKPENLLVSGPEVVKIADFGLAREIRSRPPYTDYVSTRWYRAPEILLRSTSYSSP  179 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCChhhEEEcCCCCEEEeecccceeccCCCCcCCCCCcccccCceeeecCcCcCCc
Confidence            999999999999999999999988    999999999999999999976543  23445789999999998654 47899


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|+||||+++++|++|.+||...+      ..+....+...++.++...+.........+.      .  ......  ..
T Consensus       180 ~Di~s~G~~l~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~--~~  243 (283)
T cd07830         180 VDIWALGCIMAELYTLRPLFPGSS------EIDQLYKICSVLGTPTKQDWPEGYKLASKLG------F--RFPQFA--PT  243 (283)
T ss_pred             cchhhHHHHHHHHHhCCCccCCCC------hHHHHHHHHHhcCCCChhhhhhHhhhhcccc------c--cccccc--cc
Confidence            999999999999999999997654      4566777777777766554322111000000      0  000000  00


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..  ....+..+..+.+||.+||+.||++|||+.|++.||||
T Consensus       244 ~~--~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~~~~~  283 (283)
T cd07830         244 SL--HQLIPNASPEAIDLIKDMLRWDPKKRPTASQALQHPYF  283 (283)
T ss_pred             cH--HHHcccCCHHHHHHHHHhcccCcccCCCHHHHhhCCCC
Confidence            00  01111225789999999999999999999999999998

Serine/Threonine Kinases (STKs), Male germ cell-Associated Kinase (MAK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of human MAK and MAK-related kinase (MRK), Saccharomyces cerevisiae Ime2p, Schizosaccharomyces pombe Mei4-dependent protein 3 (Mde3) and Pit1, Caenorhabditis elegans dyf-5, Arabidopsis thaliana MHK, and similar proteins. These proteins play important roles during meiosis. MAK is highly expressed in testicular cells specifically in the meiotic phase, but is not essential for spermatogenesis and fertili

>cd06645 STKc_MAP4K3 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 3

Probab=99.97  E-value=2.4e-30  Score=231.02  Aligned_cols=226  Identities=19%  Similarity=0.177  Sum_probs=164.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .++..+++|.+...-... ...++++......  ..+++++....... .....|+||||++||+|.+++.....+++.+
T Consensus        32 ~~~~~~~ik~~~~~~~~~-~~~~~~e~~~~~~--l~h~~ii~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  107 (267)
T cd06645          32 NTGELAAIKVIKLEPGED-FAVVQQEIIMMKD--CKHSNIVAYFGSYL-RRDKLWICMEFCGGGSLQDIYHVTGPLSESQ  107 (267)
T ss_pred             CCCcEEEEEEEecCchhH-HHHHHHHHHHHHh--CCCCCeeeEEEEEE-eCCEEEEEEeccCCCcHHHHHHhcCCCCHHH
Confidence            356678888876443222 2234444444333  35666655554432 3467899999999999999988777889999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh---CCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL---GSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~---~~~~~  169 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|+..|+|||++.   ...++
T Consensus       108 ~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  187 (267)
T cd06645         108 IAYVSRETLQGLYYLHSKGKMHRDIKGANILLTDNGHVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYN  187 (267)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEECcceeeeEccCcccccccccCcccccChhhhccccCCCCC
Confidence            99999999999999999999998    9999999999999999998654322   23447899999999985   34588


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++|+|++|..||.....      ...+..+.. ....+.                               
T Consensus       188 ~~~DvwSlG~il~~l~~~~~p~~~~~~------~~~~~~~~~-~~~~~~-------------------------------  229 (267)
T cd06645         188 QLCDIWAVGITAIELAELQPPMFDLHP------MRALFLMTK-SNFQPP-------------------------------  229 (267)
T ss_pred             chhhhHHHHHHHHHHhcCCCCcccccc------hhhHHhhhc-cCCCCC-------------------------------
Confidence            999999999999999999999853321      111111100 000000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                           ........+..+.+||.+||..||++|||++++++|||
T Consensus       230 -----~~~~~~~~~~~~~~li~~~l~~~P~~R~~~~~ll~~~~  267 (267)
T cd06645         230 -----KLKDKMKWSNSFHHFVKMALTKNPKKRPTAEKLLQHPF  267 (267)
T ss_pred             -----cccccCCCCHHHHHHHHHHccCCchhCcCHHHHhcCCC
Confidence                 00001123457889999999999999999999999999

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06652 STKc_MEKK2 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 2

Probab=99.97  E-value=3.7e-30  Score=229.60  Aligned_cols=226  Identities=18%  Similarity=0.192  Sum_probs=169.1

Q ss_pred             ccCcccccccccCcc----chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDL----TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+++|.+....    ...+...++++......  +.+++++......... ...+|+||||++||+|.+++.....
T Consensus        25 ~~~~~v~ik~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~  102 (265)
T cd06652          25 DTGRELAVKQVQFDPESPETSKEVNALECEIQLLKN--LLHERIVQYYGCLRDPMERTLSIFMEHMPGGSIKDQLKSYGA  102 (265)
T ss_pred             CCCcEEEEEEeecCcCCcccHHHHHHHHHHHHHHHh--cCCCCeeeEEeEeccCCCceEEEEEEecCCCcHHHHHHHcCC
Confidence            457788998775322    12234566666665554  3566666655543322 3567899999999999999877666


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------CCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~l~  164 (358)
                      +++..+..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++.....      ......|+..|+|||++.
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (265)
T cd06652         103 LTENVTRKYTRQILEGVSYLHSNMIVHRDIKGANILRDSVGNVKLGDFGASKRLQTICLSGTGMKSVTGTPYWMSPEVIS  182 (265)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEecCCCCEEECcCccccccccccccccccccCCCCccccChhhhc
Confidence            7888889999999999999999999998    999999999999999999865432      233446889999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++|||||||++|+|++|+.||....         ....+........                           
T Consensus       183 ~~~~~~~~Dv~slG~il~el~~g~~p~~~~~---------~~~~~~~~~~~~~---------------------------  226 (265)
T cd06652         183 GEGYGRKADIWSVGCTVVEMLTEKPPWAEFE---------AMAAIFKIATQPT---------------------------  226 (265)
T ss_pred             CCCCCcchhHHHHHHHHHHHhhCCCCCCccc---------hHHHHHHHhcCCC---------------------------
Confidence            8889999999999999999999999996322         1111222211110                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                ....+...+..+.++|.+||. +|++|||++++++|||+.
T Consensus       227 ----------~~~~~~~~~~~~~~~i~~~l~-~p~~Rp~~~~il~~~~~~  265 (265)
T cd06652         227 ----------NPVLPPHVSDHCRDFLKRIFV-EAKLRPSADELLRHTFVH  265 (265)
T ss_pred             ----------CCCCchhhCHHHHHHHHHHhc-ChhhCCCHHHHhcCcccC
Confidence                      011233446788899999995 999999999999999984

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 2 (MEKK2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK2 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK2 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates the MAPK kinase MEK5 (or MKK5), which in turn phosphorylates and activates extracellular signal-regulated kinase 5 (ERK5). The ERK5 cascade plays roles in promoting cell proliferation, differentiation, neuronal survival, and neuroprotection. MEKK2 also activates ERK1/2, c-Jun N-terminal kinase (JNK) and p38 through their re

>cd06659 STKc_PAK6 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 6

Probab=99.96  E-value=2.8e-30  Score=234.41  Aligned_cols=229  Identities=18%  Similarity=0.214  Sum_probs=171.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+..... .....+.++......  ..|++++....... .....|+||||++|++|..++.. ..+.+.+
T Consensus        44 ~~~~~v~iK~~~~~~~-~~~~~~~~e~~~l~~--l~hp~i~~~~~~~~-~~~~~~iv~e~~~~~~L~~~~~~-~~~~~~~  118 (297)
T cd06659          44 HSGRQVAVKMMDLRKQ-QRRELLFNEVVIMRD--YQHQNVVEMYKSYL-VGEELWVLMEFLQGGALTDIVSQ-TRLNEEQ  118 (297)
T ss_pred             CCCCEEEEEEEEeccc-chHHHHHHHHHHHHh--CCCCchhhhhhhee-eCCeEEEEEecCCCCCHHHHHhh-cCCCHHH
Confidence            3567889998854332 234455555555444  35666666655443 34678999999999999987654 4578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   ....+|+..|+|||++.+..++.++
T Consensus       119 ~~~~~~qi~~~L~~LH~~~ivH~dl~p~Nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  198 (297)
T cd06659         119 IATVCESVLQALCYLHSQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRTPYGTEV  198 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHeEEccCCcEEEeechhHhhcccccccccceecCccccCHHHHccCCCCchh
Confidence            99999999999999999999999    9999999999999999998654322   2345789999999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||+||++|+|++|..||....      ....+..+   ....+.                                  
T Consensus       199 Dv~slG~il~el~~g~~p~~~~~------~~~~~~~~---~~~~~~----------------------------------  235 (297)
T cd06659         199 DIWSLGIMVIEMVDGEPPYFSDS------PVQAMKRL---RDSPPP----------------------------------  235 (297)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHH---hccCCC----------------------------------
Confidence            99999999999999999996432      12222111   111100                                  


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                        ........+..+.++|.+||+.||.+|||++++++||||.....
T Consensus       236 --~~~~~~~~~~~l~~~i~~~l~~~P~~Rps~~~ll~~~~~~~~~~  279 (297)
T cd06659         236 --KLKNAHKISPVLRDFLERMLTREPQERATAQELLDHPFLLQTGL  279 (297)
T ss_pred             --CccccCCCCHHHHHHHHHHhcCCcccCcCHHHHhhChhhccCCC
Confidence              00111223567889999999999999999999999999987543

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 6, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK6 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK6 may play a role i

>cd07879 STKc_p38delta_MAPK13 Catalytic domain of the Serine/Threonine Kinase, p38delta Mitogen-Activated Protein Kinase

Probab=99.96  E-value=9.7e-30  Score=235.49  Aligned_cols=257  Identities=21%  Similarity=0.265  Sum_probs=181.1

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..+|+|.+....... ....+.++.+....  ..|++++.........     ....|+||||+.+ +|..+..  .
T Consensus        38 ~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~--~  112 (342)
T cd07879          38 RTGEKVAIKKLSRPFQSEIFAKRAYRELTLLKH--MQHENVIGLLDVFTSAVSGDEFQDFYLVMPYMQT-DLQKIMG--H  112 (342)
T ss_pred             CCCcEEEEEEecCccccccchhHHHHHHHHHHh--cCCCCccchhheecccccCCCCceEEEEeccccc-CHHHHHc--C
Confidence            457788999887654332 33455666665555  3566666665543322     2346899999974 6665443  2


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCC-CC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-KY  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~-~~  168 (358)
                      .+.+..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++...........+++.|+|||++.+. .+
T Consensus       113 ~~~~~~~~~~~~qi~~aL~~LH~~~i~H~dlkp~NIll~~~~~~kL~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  192 (342)
T cd07879         113 PLSEDKVQYLVYQMLCGLKYIHSAGIIHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILNWMHY  192 (342)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEeeCCCCcCCCCCCCCceeeecccChhhhcCcccc
Confidence            46778889999999999999999999999    99999999999999999998766555566789999999999874 58


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|+.||.+.+      ....+..+...++.+++...........       ..........+.
T Consensus       193 ~~~~Dv~slGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~  259 (342)
T cd07879         193 NQTVDIWSVGCIMAEMLTGKTLFKGKD------YLDQLTQILKVTGVPGPEFVQKLEDKAA-------KSYIKSLPKYPR  259 (342)
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhcccch-------HHHHhhcCCccc
Confidence            999999999999999999999997543      4556677777777665544322111100       000000000000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ..    .....+..+..+.+||.+||+.||++|||+++++.||||.....
T Consensus       260 ~~----~~~~~~~~~~~~~~li~~~l~~dP~~R~~~~e~l~h~~f~~~~~  305 (342)
T cd07879         260 KD----FSTLFPKASPQAVDLLEKMLELDVDKRLTATEALEHPYFDSFRD  305 (342)
T ss_pred             ch----HHHHhcCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcchhhccc
Confidence            00    00011234667899999999999999999999999999987543

Serine/Threonine Kinases (STKs), p38delta subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The p38delta subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. p38 kinases are mitogen-activated protein kinases (MAPKs), serving as important mediators of cellular responses to extracellular signals. They are activated by the MAPK kinases MKK3 and MKK6, which in turn are activated by upstream MAPK kinase kinases including TAK1, ASK1, and MLK3, in response to cellular stresses or inflammatory cytokines. Vertebrates contain four isoforms of p38, named alpha, beta, gamma, and delta. p38delta, also called MAPK13

>cd07857 STKc_MPK1 Catalytic domain of the Serine/Threonine Kinase, Fungal Mitogen-Activated Protein Kinase MPK1

Probab=99.96  E-value=1.8e-29  Score=232.69  Aligned_cols=258  Identities=20%  Similarity=0.254  Sum_probs=182.2

Q ss_pred             CcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCcccccccccccCh
Q 045353           22 SASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      +..+|+|.+....+.. ..+.+.++....... .+|.+++.......   ......|++|||+. ++|.+++.....+.+
T Consensus        27 ~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~iv~~~~~~~~~~~~~~~~~~~~e~~~-~~L~~~l~~~~~~~~  104 (332)
T cd07857          27 EETVAIKKITNVFSKKILAKRALRELKLLRHF-RGHKNITCLYDMDIVFPGNFNELYLYEELME-ADLHQIIRSGQPLTD  104 (332)
T ss_pred             CceEEEEEeccccccchhHHHHHHHHHHHHHh-cCCCChheeeeeeeeccccCCcEEEEEeccc-CCHHHHHhcCCCCCH
Confidence            5578889877554332 233444454444333 24566666554322   22345788999987 578888877777889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhC-
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLG-  165 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~-  165 (358)
                      ..+..++.|++.++.++|+.+++|+    +|||++.++.+||+|||+|......       .....||+.|+|||++.+ 
T Consensus       105 ~~~~~~~~qi~~aL~~LH~~givH~dlkp~Nili~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~  184 (332)
T cd07857         105 AHFQSFIYQILCGLKYIHSANVLHRDLKPGNLLVNADCELKICDFGLARGFSENPGENAGFMTEYVATRWYRAPEIMLSF  184 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHHeEEcCCCCEEeCcCCCceecccccccccccccCcccCccccCcHHHhCC
Confidence            9999999999999999999999999    9999999999999999999754321       233478999999999876 


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..++.++||||+||++|+|++|.+||.+.+      ....+..+...+|.++.............       ........
T Consensus       185 ~~~~~~~Di~slGv~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~  251 (332)
T cd07857         185 QSYTKAIDVWSVGCILAELLGRKPVFKGKD------YVDQLNQILQVLGTPDEETLSRIGSPKAQ-------NYIRSLPN  251 (332)
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCcCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhhhhhHH-------HHHHhccc
Confidence            458999999999999999999999997654      56788888888888776543221110000       00000000


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      .+...    .....+..+..+.+|+.+||+.||++|||+.+++.||||+....
T Consensus       252 ~~~~~----~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~~ll~~~~~~~~~~  300 (332)
T cd07857         252 IPKKP----FESIFPNANPLALDLLEKLLAFDPTKRISVEEALEHPYLAIWHD  300 (332)
T ss_pred             cCCcc----hHhhCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhhhhcC
Confidence            00000    00011223678899999999999999999999999999986543

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) MPK1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MPK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs MPK1 from Saccharomyces cerevisiae, Pmk1 from Schizosaccharomyces pombe, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. MPK1 (also called Slt2) and Pmk1 (also called Spm1) are stress-activated MAPKs that regulate the cell wall integrity (CWI) pathway, and are therefore important in the maintainance of cell shape, cell wall co

>KOG0983 consensus Mitogen-activated protein kinase (MAPK) kinase MKK7/JNKK2 [Signal transduction mechanisms]

Probab=99.96  E-value=6.4e-31  Score=221.64  Aligned_cols=230  Identities=18%  Similarity=0.171  Sum_probs=171.4

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      ..+|...|+|.+...-....-||+.+.....-.. +.-++||..+. ....+.+.||+||+|.--- ..++. ....+.+
T Consensus       114 rs~~~iiAVK~M~rt~Nkee~kRILmDldvv~~s-~dcpyIV~c~G-yFi~n~dV~IcMelMs~C~-ekLlkrik~piPE  190 (391)
T KOG0983|consen  114 RSTGHIIAVKQMRRTGNKEENKRILMDLDVVLKS-HDCPYIVQCFG-YFITNTDVFICMELMSTCA-EKLLKRIKGPIPE  190 (391)
T ss_pred             cccceEEEEEeecccCCHHHHHHHHHhhhHHhhc-cCCCeeeeeee-EEeeCchHHHHHHHHHHHH-HHHHHHhcCCchH
Confidence            4556778999999988888888888777665432 23345555544 4455778899999875321 11111 2223566


Q ss_pred             hhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCC---C
Q 045353           98 SSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGS---K  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~---~  167 (358)
                      .-+-.+...++.++.|+.+ +++|||    +|||+|+.|++||||||+|..+-.  ..+...|.+.|||||.+.-.   .
T Consensus       191 ~ilGk~tva~v~AL~YLKeKH~viHRDvKPSNILlDe~GniKlCDFGIsGrlvdSkAhtrsAGC~~YMaPERidp~~~~k  270 (391)
T KOG0983|consen  191 RILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGNIKLCDFGISGRLVDSKAHTRSAGCAAYMAPERIDPPDKPK  270 (391)
T ss_pred             HhhhhhHHHHHHHHHHHHHhcceeecccCccceEEccCCCEEeecccccceeecccccccccCCccccCccccCCCCCCc
Confidence            6666777778888888875 678888    899999999999999999965432  24556899999999999754   4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      |+.++||||||++++||.||+.||.+.+.     +.+.+..+..   ..|+..                           
T Consensus       271 YDiRaDVWSlGITlveLaTg~yPy~~c~t-----dFe~ltkvln---~ePP~L---------------------------  315 (391)
T KOG0983|consen  271 YDIRADVWSLGITLVELATGQYPYKGCKT-----DFEVLTKVLN---EEPPLL---------------------------  315 (391)
T ss_pred             cchhhhhhhhccchhhhhcccCCCCCCCc-----cHHHHHHHHh---cCCCCC---------------------------
Confidence            99999999999999999999999987653     5566655543   222111                           


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                               +....+++.|.+|+..||..|+.+||.-.++|+|||+..
T Consensus       316 ---------~~~~gFSp~F~~fv~~CL~kd~r~RP~Y~~Ll~h~Fi~~  354 (391)
T KOG0983|consen  316 ---------PGHMGFSPDFQSFVKDCLTKDHRKRPKYNKLLEHPFIKR  354 (391)
T ss_pred             ---------CcccCcCHHHHHHHHHHhhcCcccCcchHHHhcCcceee
Confidence                     112236899999999999999999999999999999985

>cd05609 STKc_MAST Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine kinase

Probab=99.96  E-value=3.6e-30  Score=234.60  Aligned_cols=229  Identities=18%  Similarity=0.119  Sum_probs=169.3

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+++|.+......  .....+.++.+....  ..+++++....... .....|+||||++||+|.+++.....+.+
T Consensus        24 ~~~~~v~ik~~~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~~~~~~  100 (305)
T cd05609          24 ETRQRFAMKKINKQNLILRNQIQQVFVERDILTF--AENPFVVSMFCSFE-TKRHLCMVMEYVEGGDCATLLKNIGALPV  100 (305)
T ss_pred             CCCcEEEEEEeehhhhhhHHHHHHHHHHHHHHHh--CCCCCeeeeEEEEe-cCCEEEEEEecCCCCcHHHHHHHcCCCCH
Confidence            44567888877665432  233445555444443  45666666654433 34578999999999999999987777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------------------CCCCccCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------------------FTNDIQTR  155 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------------------~~~~~gt~  155 (358)
                      ..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||+++.....                  .....|+.
T Consensus       101 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~NIll~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (305)
T cd05609         101 DMARMYFAETVLALEYLHNYGIVHRDLKPDNLLITSMGHIKLTDFGLSKIGLMSLTTNLYEGHIEKDTREFLDKQVCGTP  180 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCchHHEEECCCCCEEEeeCCCccccCcCccccccccccccchhhccccCCccCc
Confidence            8899999999999999999999988    9999999999999999998642100                  11235788


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      .|+|||.+.+..++.++|||||||++|+|++|..||.+..      ....+..+.......|                  
T Consensus       181 ~y~aPE~~~~~~~~~~~Di~slG~vl~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~------------------  236 (305)
T cd05609         181 EYIAPEVILRQGYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEWP------------------  236 (305)
T ss_pred             cccCchhccCCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccCCC------------------
Confidence            9999999998889999999999999999999999996433      1222221111000000                  


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC---HHHHhcCcCcCCC
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT---AAQCLSHPWMSAG  296 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t---a~elL~hpwf~~~  296 (358)
                                           ......+..+.+||.+||+.||++|||   +.++|+||||...
T Consensus       237 ---------------------~~~~~~~~~~~~li~~~l~~~P~~R~~~~~~~~ll~~~~~~~~  279 (305)
T cd05609         237 ---------------------EGDEALPADAQDLISRLLRQNPLERLGTGGAFEVKQHRFFLGL  279 (305)
T ss_pred             ---------------------CccccCCHHHHHHHHHHhccChhhccCccCHHHHHhCccccCC
Confidence                                 001134677899999999999999998   7999999999764

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. There are four mammalian MAST kinases, named MAST1-MAST4. MAST1 is also referred to as syntrophin-associated STK (SAST), while MAST2 is also called MAST205. MAST kinases are cytoskeletal associated kinases of unknown function that a

>KOG0608 consensus Warts/lats-like serine threonine kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.96  E-value=8.5e-31  Score=242.73  Aligned_cols=223  Identities=21%  Similarity=0.246  Sum_probs=172.7

Q ss_pred             ccccccC--ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHH
Q 045353           26 ENKSLYG--DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNE  103 (358)
Q Consensus        26 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~  103 (358)
                      |.|.|+.  ++.++|-...|.++...+.  +.+.-+|+++..... ...+|.||+|++||++-.+|-..+++.+.-++.+
T Consensus       658 AmKTLrKaDVl~rnQvaHVKAERDILAE--ADn~WVVrLyySFQD-kdnLYFVMdYIPGGDmMSLLIrmgIFeE~LARFY  734 (1034)
T KOG0608|consen  658 AMKTLRKADVLMRNQVAHVKAERDILAE--ADNEWVVRLYYSFQD-KDNLYFVMDYIPGGDMMSLLIRMGIFEEDLARFY  734 (1034)
T ss_pred             HHhhhHHHHHHhhhhhhhhhhhhhhHhh--cCCcceEEEEEEecc-CCceEEEEeccCCccHHHHHHHhccCHHHHHHHH
Confidence            5566654  5666666777777777766  567778888776654 4578999999999999999999999999999999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce---ecCCC-----------------------------
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC---WTHKQ-----------------------------  147 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~---~~~~~-----------------------------  147 (358)
                      +..+--++.+.|..|+|||    +|||||.+|+|||+|||++.   +.+..                             
T Consensus       735 IAEltcAiesVHkmGFIHRDiKPDNILIDrdGHIKLTDFGLCTGfRWTHdskYYq~gdH~RqDSmep~~e~~d~~~~lkv  814 (1034)
T KOG0608|consen  735 IAELTCAIESVHKMGFIHRDIKPDNILIDRDGHIKLTDFGLCTGFRWTHDSKYYQEGDHHRQDSMEPSPEWADISKCLKV  814 (1034)
T ss_pred             HHHHHHHHHHHHhccceecccCccceEEccCCceeeeeccccccceeccccccccCCCccccccCCCchhhccccccchH
Confidence            9999999999999999999    99999999999999999993   22110                             


Q ss_pred             -------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhC
Q 045353          148 -------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG  214 (358)
Q Consensus       148 -------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g  214 (358)
                                   ....+||+-|+|||++...+|+..+|+||.|||||+|+.|++||...+.....              
T Consensus       815 L~~ra~~~h~r~~ahslvgt~nyiapevl~r~g~~q~cdwws~gvil~em~~g~~pf~~~tp~~tq--------------  880 (1034)
T KOG0608|consen  815 LERRAMRQHQRILAHSLVGTPNYIAPEVLARTGYTQLCDWWSVGVILYEMLVGQPPFLADTPGETQ--------------  880 (1034)
T ss_pred             HHHHHHhhhhhhhhhhhcCCCcccChHHhcccCccccchhhHhhHHHHHHhhCCCCccCCCCCcce--------------
Confidence                         01238999999999999999999999999999999999999999755422110              


Q ss_pred             CCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC---HHHHhcCc
Q 045353          215 MMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT---AAQCLSHP  291 (358)
Q Consensus       215 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t---a~elL~hp  291 (358)
                                 .....|...                   ..+.....+++++.+||.++ ..+++.|+.   ++||..||
T Consensus       881 -----------~kv~nw~~~-------------------l~~~~~~~ls~e~~~li~kL-c~sad~RLGkng~d~vKaHp  929 (1034)
T KOG0608|consen  881 -----------YKVINWRNF-------------------LHIPYQGNLSKEALDLIQKL-CCSADSRLGKNGADQVKAHP  929 (1034)
T ss_pred             -----------eeeeehhhc-------------------cccccccccCHHHHHHHHHH-hcChhhhhcccchhhhhcCc
Confidence                       000000000                   01123345688999999985 457999974   78899999


Q ss_pred             CcCCC
Q 045353          292 WMSAG  296 (358)
Q Consensus       292 wf~~~  296 (358)
                      ||++-
T Consensus       930 fFkgI  934 (1034)
T KOG0608|consen  930 FFKGI  934 (1034)
T ss_pred             ccccc
Confidence            99874

>cd06642 STKc_STK25-YSK1 Catalytic domain of the Protein Serine/Threonine Kinase, STK25 or Yeast Sps1/Ste20-related kinase 1

Probab=99.96  E-value=4e-30  Score=230.92  Aligned_cols=225  Identities=18%  Similarity=0.196  Sum_probs=173.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+.........+.+.++.+....  ..|.+++....... .....|+||||+.|++|.+++.. ..+.+..
T Consensus        27 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~  102 (277)
T cd06642          27 RTKEVVAIKIIDLEEAEDEIEDIQQEITVLSQ--CDSPYITRYYGSYL-KGTKLWIIMEYLGGGSALDLLKP-GPLEETY  102 (277)
T ss_pred             CCCeEEEEEEeccccchHHHHHHHHHHHHHHc--CCCCccHhhhcccc-cCCceEEEEEccCCCcHHHHhhc-CCCCHHH
Confidence            45668899988766666666778777776665  35666666655443 35678999999999999998764 3467888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....|+..|+|||.+.+..++.++
T Consensus       103 ~~~~~~~i~~~l~~lH~~~ivH~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  182 (277)
T cd06642         103 IATILREILKGLDYLHSERKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDFKA  182 (277)
T ss_pred             HHHHHHHHHHHHHHHhcCCeeccCCChheEEEeCCCCEEEccccccccccCcchhhhcccCcccccCHHHhCcCCCchhh
Confidence            89999999999999999999988    9999999999999999999664432   2234688899999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+|||||++|+|++|..||.....      ......+   ....                                    
T Consensus       183 Dv~slG~il~el~tg~~p~~~~~~------~~~~~~~---~~~~------------------------------------  217 (277)
T cd06642         183 DIWSLGITAIELAKGEPPNSDLHP------MRVLFLI---PKNS------------------------------------  217 (277)
T ss_pred             hHHHHHHHHHHHHhCCCCCcccch------hhHHhhh---hcCC------------------------------------
Confidence            999999999999999999853221      1111000   0000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                        ........+..+.++|.+||..+|++|||+.++++||||..
T Consensus       218 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~  258 (277)
T cd06642         218 --PPTLEGQYSKPFKEFVEACLNKDPRFRPTAKELLKHKFITR  258 (277)
T ss_pred             --CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHHhHHHHH
Confidence              00112234567889999999999999999999999999975

Serine/threonine kinases (STKs), STK25 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The STK25 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. STK25 is also called Ste20/oxidant stress response kinase 1 (SOK1) or yeast Sps1/Ste20-related kinase 1 (YSK1). STK25 is localized in the Golgi apparatus through its interaction with the Golgi matrix protein GM130. It may play a role in the regulation of cell migration and polarization. STK25 binds and phosphorylates CCM3 (cerebral cavernous malformation 3), also called PCD10 (programmed cell death 10), and may play a role in apoptosis. Human STK25

>cd05096 PTKc_DDR1 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 1

Probab=99.96  E-value=5.4e-30  Score=233.26  Aligned_cols=225  Identities=14%  Similarity=0.103  Sum_probs=165.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      .+..+|+|.+......+.++.+.++.+....+  .|++++........ ....|+||||+.||+|.+++....       
T Consensus        45 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  121 (304)
T cd05096          45 RPLLVAVKILRPDANKNARNDFLKEVKILSRL--KDPNIIRLLGVCVD-EDPLCMITEYMENGDLNQFLSSHHLDDKEEN  121 (304)
T ss_pred             cceEEEEEEecCCCCHHHHHHHHHHHHHHhhc--CCCCeeEEEEEEec-CCceEEEEecCCCCcHHHHHHhccccccccc
Confidence            34468999998887777788888888776663  56777766554333 356899999999999998775422       


Q ss_pred             ------------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCc
Q 045353           94 ------------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDI  152 (358)
Q Consensus        94 ------------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~  152 (358)
                                  .+....+..++.+++.|+.++|+.+++|+    +|||++.++.+||+|||++......     .....
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~DfG~~~~~~~~~~~~~~~~~~  201 (304)
T cd05096         122 GNDAVPPAHCLPAISYSSLLHVALQIASGMKYLSSLNFVHRDLATRNCLVGENLTIKIADFGMSRNLYAGDYYRIQGRAV  201 (304)
T ss_pred             cccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCcchhheEEcCCccEEECCCccceecccCceeEecCcCC
Confidence                        23456778899999999999999999999    9999999999999999999764322     12335


Q ss_pred             cCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc--CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh
Q 045353          153 QTRQYRCPEVLLGSKYSTSADLWSFACICFELAT--GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF  230 (358)
Q Consensus       153 gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  230 (358)
                      ++..|+|||++.+..++.++|||||||++|+|++  +..||...+      ....+..+...+......           
T Consensus       202 ~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~~-----------  264 (304)
T cd05096         202 LPIRWMAWECILMGKFTTASDVWAFGVTLWEILMLCKEQPYGELT------DEQVIENAGEFFRDQGRQ-----------  264 (304)
T ss_pred             CCccccCHHHHhcCCCCchhhhHHHHHHHHHHHHccCCCCCCcCC------HHHHHHHHHHHhhhcccc-----------
Confidence            5788999999998889999999999999999986  556775433      222222221111000000           


Q ss_pred             hhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                                             .....++.++..+.+||.+||+.||++|||+.++.
T Consensus       265 -----------------------~~~~~~~~~~~~~~~li~~cl~~~p~~RPs~~~i~  299 (304)
T cd05096         265 -----------------------VYLFRPPPCPQGLYELMLQCWSRDCRERPSFSDIH  299 (304)
T ss_pred             -----------------------ccccCCCCCCHHHHHHHHHHccCCchhCcCHHHHH
Confidence                                   00012234467889999999999999999999994

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 1 (DDR1) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR1 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR1 binds to all collagens tested to date (types I-IV). It is widely expressed in many tissues. It is abundant in the brain and is also found in k

>cd06629 STKc_MAPKKK_Bck1_like Catalytic domain of fungal Bck1-like MAP Kinase Kinase Kinases

Probab=99.96  E-value=7.5e-30  Score=228.43  Aligned_cols=229  Identities=19%  Similarity=0.205  Sum_probs=167.0

Q ss_pred             ccCcccccccccCccchhhh---------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc
Q 045353           20 ESSASKENKSLYGDLTKNQK---------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      .+|..+++|.+........+         +.++++.+...+  ..+.+++....... .....++||||+.||+|.+++.
T Consensus        24 ~~~~~~a~K~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~  100 (272)
T cd06629          24 TTGEMMAVKQVELPATIAGRHDSRQKDMVKALRSEIETLKD--LDHLNIVQYLGFET-TEEYLSIFLEYVPGGSIGSCLR  100 (272)
T ss_pred             CCCceeeeeeeechhhhhcccchHHHHHHHHHHHHHHHHHh--cCCCCcceEEEEec-cCCceEEEEecCCCCcHHHHHh
Confidence            35778888877543222211         234445444444  35666666555433 3467899999999999999998


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhH
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPE  161 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE  161 (358)
                      ....+.+..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......     .....|+..|+|||
T Consensus       101 ~~~~l~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~PE  180 (272)
T cd06629         101 TYGRFEEQLVRFFTEQVLEGLAYLHSKGILHRDLKADNLLVDADGICKISDFGISKKSDDIYDNDQNMSMQGSVFWMAPE  180 (272)
T ss_pred             hccCCCHHHHHHHHHHHHHHHHHHhhCCeeecCCChhhEEEcCCCeEEEeeccccccccccccccccccccCCccccCHH
Confidence            77778888999999999999999999999988    9999999999999999999754322     22346888999999


Q ss_pred             HHhCCC--CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          162 VLLGSK--YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       162 ~l~~~~--~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ++.+..  ++.++|+||+||++|++++|..||....         ....+.+........                   .
T Consensus       181 ~~~~~~~~~~~~~Dv~slG~~l~~l~~g~~p~~~~~---------~~~~~~~~~~~~~~~-------------------~  232 (272)
T cd06629         181 VIHSYSQGYSAKVDIWSLGCVVLEMFAGRRPWSDEE---------AIAAMFKLGNKRSAP-------------------P  232 (272)
T ss_pred             HhccccCCCCccchhHHHHHHHHHHHhCCCCCcCcc---------hHHHHHHhhccccCC-------------------c
Confidence            998755  7899999999999999999999995322         111111111100000                   0


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                              .      .......++..+.+||.+||..||.+|||++++|+||||
T Consensus       233 --------~------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~  272 (272)
T cd06629         233 --------I------PPDVSMNLSPVALDFLNACFTINPDNRPTARELLQHPFI  272 (272)
T ss_pred             --------C------CccccccCCHHHHHHHHHHhcCChhhCCCHHHHhhCCCC
Confidence                    0      001112346789999999999999999999999999997

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, fungal Bck1-like proteins, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this group include the MAPKKKs Saccharomyces cerevisiae Bck1 and Schizosaccharomyces pombe Mkh1, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Budding yeast Bck1 is part of the cell inte

>cd06640 STKc_MST4 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 4

Probab=99.96  E-value=4.2e-30  Score=230.83  Aligned_cols=225  Identities=19%  Similarity=0.190  Sum_probs=173.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++..+|+|.+....+......+.++.+.....  .|++++....... .+...|+||||+.||+|.+++.. ..+.+.++
T Consensus        28 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~-~~l~~~~~  103 (277)
T cd06640          28 TQQVVAIKIIDLEEAEDEIEDIQQEITVLSQC--DSPYVTKYYGSYL-KGTKLWIIMEYLGGGSALDLLRA-GPFDEFQI  103 (277)
T ss_pred             CCEEEEEEEEeccccHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEE-ECCEEEEEEecCCCCcHHHHHhc-CCCCHHHH
Confidence            56688999887665556667777777766653  5666666655433 34678999999999999998865 34678888


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||++.+..++.++|
T Consensus       104 ~~~~~~l~~~l~~lh~~~ivH~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~D  183 (277)
T cd06640         104 ATMLKEILKGLDYLHSEKKIHRDIKAANVLLSEQGDVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIQQSAYDSKAD  183 (277)
T ss_pred             HHHHHHHHHHHHHHHhCCccCcCCChhhEEEcCCCCEEEcccccceeccCCccccccccCcccccCHhHhccCCCccHHH
Confidence            8999999999999999999988    9999999999999999999664332   22346788999999999888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      +|||||++|+|++|..||.....      ......+   ....                                     
T Consensus       184 v~slG~il~el~tg~~p~~~~~~------~~~~~~~---~~~~-------------------------------------  217 (277)
T cd06640         184 IWSLGITAIELAKGEPPNSDMHP------MRVLFLI---PKNN-------------------------------------  217 (277)
T ss_pred             HHHHHHHHHHHHHCCCCCCCcCh------HhHhhhh---hcCC-------------------------------------
Confidence            99999999999999999964321      1111000   0000                                     


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ....+...+..+.+|+.+||..+|++|||+.++++|+||...
T Consensus       218 -~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  259 (277)
T cd06640         218 -PPTLTGEFSKPFKEFIDACLNKDPSFRPTAKELLKHKFIVKN  259 (277)
T ss_pred             -CCCCchhhhHHHHHHHHHHcccCcccCcCHHHHHhChHhhhc
Confidence             011223446788999999999999999999999999999753

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 4 (MST4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST4 is sometimes referred to as MASK (MST3 and SOK1-related kinase). It plays a role in mitogen-activated protein kinase (MAPK) signaling during cytoskeletal rearrangement, morphogenesis, and apoptosis. It influences cell growth and transformation by modulating the extracellular signal-regulated kinase (ERK) pathway. MST4 may also play a role in tumor formation and progression. It localizes in the Golgi apparatus by inter

>PLN00009 cyclin-dependent kinase A; Provisional

Probab=99.96  E-value=6.9e-30  Score=231.41  Aligned_cols=254  Identities=22%  Similarity=0.256  Sum_probs=178.9

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccC
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      .+|..+++|....... ......+.++.+...++  .+++++....... .....|+||||+++ +|.+++....  ...
T Consensus        25 ~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~  100 (294)
T PLN00009         25 VTNETIALKKIRLEQEDEGVPSTAIREISLLKEM--QHGNIVRLQDVVH-SEKRLYLVFEYLDL-DLKKHMDSSPDFAKN  100 (294)
T ss_pred             CCCcEEEEEehhhccccccchHHHHHHHHHHHhc--cCCCEeeEEEEEe-cCCeEEEEEecccc-cHHHHHHhCCCCCcC
Confidence            3567788888755332 23345566666666653  5666766665544 34678999999975 6666554322  246


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      +..+..++.+++.++.++|+.+++|+    +||+++. ++.+||+|||++.....   ......+++.|+|||++.+. .
T Consensus       101 ~~~~~~~~~qi~~aL~~LH~~~i~H~dl~p~nill~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  180 (294)
T PLN00009        101 PRLIKTYLYQILRGIAYCHSHRVLHRDLKPQNLLIDRRTNALKLADFGLARAFGIPVRTFTHEVVTLWYRAPEILLGSRH  180 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeCCCCCcceEEEECCCCEEEEcccccccccCCCccccccCceeecccCHHHHhCCCC
Confidence            67788899999999999999999999    9999985 56799999999965432   23345778999999999874 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++||||+||++|+|++|.+||....      ..+.+..+....+.+....+........+.....         .+.
T Consensus       181 ~~~~~Dv~slG~i~~~l~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~  245 (294)
T PLN00009        181 YSTPVDIWSVGCIFAEMVNQKPLFPGDS------EIDELFKIFRILGTPNEETWPGVTSLPDYKSAFP---------KWP  245 (294)
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhccccccchhhhhhcc---------cCC
Confidence            7899999999999999999999997544      4556666777777766555443222111110000         000


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...    .....+..+..+.+++.+||+.||++||++.++++||||.+.
T Consensus       246 ~~~----~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~~~l~~~~~~~~  290 (294)
T PLN00009        246 PKD----LATVVPTLEPAGVDLLSKMLRLDPSKRITARAALEHEYFKDL  290 (294)
T ss_pred             CCC----HHHhCcCCChHHHHHHHHHccCChhhCcCHHHHhcCchHhHH
Confidence            000    001123456788999999999999999999999999999864

>cd06917 STKc_NAK1_like Catalytic domain of Fungal Nak1-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=4.3e-30  Score=230.64  Aligned_cols=229  Identities=20%  Similarity=0.251  Sum_probs=173.4

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|..+++|.+...........+.++.+...+.. ..+++++...... ......|+||||++|++|.+++... .+.+
T Consensus        23 ~~~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~l~~~~~~~vi~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~-~l~~  100 (277)
T cd06917          23 VPTGRVVALKIINLDTPDDDVSDIQREVALLSQLRQSQPPNITKYYGSY-LKGPRLWIIMEYAEGGSVRTLMKAG-PIAE  100 (277)
T ss_pred             cCCCcEEEEEEecCCCCchhHHHHHHHHHHHHHhccCCCCCeeeEeeee-eeCCEEEEEEecCCCCcHHHHHHcc-CCCH
Confidence            35678899999887766666677777766655542 1355555554433 3456789999999999999988654 5778


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....|+..|+|||.+.+. .++
T Consensus       101 ~~~~~i~~~i~~~l~~lh~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  180 (277)
T cd06917         101 KYISVIIREVLVALKYIHKVGVIHRDIKAANILVTNTGNVKLCDFGVAALLNQNSSKRSTFVGTPYWMAPEVITEGKYYD  180 (277)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCcCHHHEEEcCCCCEEEccCCceeecCCCccccccccCCcceeCHHHhccCCccc
Confidence            8899999999999999999999999    9999999999999999999765432   2334789999999998764 478


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+|||||++|+|++|..||.+...      ..   .+..+....++                               
T Consensus       181 ~~~Dv~slG~~l~~ll~g~~p~~~~~~------~~---~~~~~~~~~~~-------------------------------  220 (277)
T cd06917         181 TKADIWSLGITIYEMATGNPPYSDVDA------FR---AMMLIPKSKPP-------------------------------  220 (277)
T ss_pred             cchhHHHHHHHHHHHHhCCCCCCCCCh------hh---hhhccccCCCC-------------------------------
Confidence            999999999999999999999964321      00   00000000000                               


Q ss_pred             hhHHhhhcCC-hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFN-ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ..+ ...+.++.+++.+||..||++|||+.+++.|+||+..
T Consensus       221 -------~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~il~~~~~~~~  261 (277)
T cd06917         221 -------RLEDNGYSKLLREFVAACLDEEPKERLSAEELLKSKWIKAH  261 (277)
T ss_pred             -------CCCcccCCHHHHHHHHHHcCCCcccCcCHHHHhhChHhhcc
Confidence                   001 1135678999999999999999999999999999764

Serine/threonine kinases (STKs), Nak1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nak1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of Schizosaccharomyces pombe Nak1, Saccharomyces cerevisiae Kic1p (kinase that interacts with Cdc31p) and related proteins. Nak1 (also known as N-rich kinase 1), is required by fission yeast for polarizing the tips of actin cytoskeleton and is involved in cell growth, cell separation, cell morphology and cell-cycle progression. Kic1p is required by budding yeast for cell integrity and morphogenesis. Kic1p interacts with Cdc31p, the yeast homologue of cent

>cd07856 STKc_Sty1_Hog1 Catalytic domain of the Serine/Threonine Kinases, Fungal Mitogen-Activated Protein Kinases Sty1 and Hog1

Probab=99.96  E-value=8.2e-30  Score=234.57  Aligned_cols=254  Identities=22%  Similarity=0.296  Sum_probs=186.9

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      +|..+++|.+.... +....+.+.++.+...+  +.|++++.............|+||||+ +++|..++... .+....
T Consensus        34 ~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~--l~hpniv~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~-~~~~~~  109 (328)
T cd07856          34 TGQNVAIKKIMKPFSTPVLAKRTYRELKLLKH--LRHENIISLSDIFISPLEDIYFVTELL-GTDLHRLLTSR-PLEKQF  109 (328)
T ss_pred             CCCEEEEEEecccccccchhHHHHHHHHHHHh--cCCCCeeeEeeeEecCCCcEEEEeehh-ccCHHHHHhcC-CCCHHH
Confidence            56778888776533 33345666677666555  356777776665544456789999999 56888776543 356677


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCCCcchhh
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADL  174 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~~~~~Di  174 (358)
                      +..++.+++.++.++|+.+++|+    .|||++.++.+||+|||.+...........++..|+|||++.+ ..++.++||
T Consensus       110 ~~~~~~ql~~aL~~LH~~~iiH~dl~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Dv  189 (328)
T cd07856         110 IQYFLYQILRGLKYVHSAGVVHRDLKPSNILINENCDLKICDFGLARIQDPQMTGYVSTRYYRAPEIMLTWQKYDVEVDI  189 (328)
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCHHHEeECCCCCEEeCccccccccCCCcCCCcccccccCceeeeccCCcCcHHHH
Confidence            78899999999999999999999    8999999999999999999876655556678999999999876 458999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh--hhhhccCCchhhhhccCCcchhhH
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR--DFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||+||++|+|++|.+||....      .......+.+.+|.+|.++........  .++.....      ....+     
T Consensus       190 ~slG~il~el~tg~~~f~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~-----  252 (328)
T cd07856         190 WSAGCIFAEMLEGKPLFPGKD------HVNQFSIITDLLGTPPDDVINTICSENTLRFVQSLPK------REPVP-----  252 (328)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhccchhhHHHHhhccc------cCCCc-----
Confidence            999999999999999997544      456677778888888876654321110  01100000      00000     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        .....+..+..+.++|.+||+.+|++|||+++++.||||....
T Consensus       253 --~~~~~~~~~~~~~~li~~~l~~~P~~R~t~~ell~~~~~~~~~  295 (328)
T cd07856         253 --FSEKFKNADPSAIDLLEKMLVFDPQKRISAAEALAHPYLAPYH  295 (328)
T ss_pred             --HHHHcCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCCcccccc
Confidence              0011123467899999999999999999999999999997643

Serine/Threonine Kinases (STKs), Fungal Mitogen-Activated Protein Kinase (MAPK) Sty1/Hog1 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Sty1/Hog1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of the MAPKs Sty1 from Schizosaccharomyces pombe, Hog1 from Saccharomyces cerevisiae, and similar proteins. MAPKs are important mediators of cellular responses to extracellular signals. Sty1 and Hog1 are stress-activated MAPKs that partipate in transcriptional regulation in response to stress. Sty1 is activated in response to oxidative stress, osmotic stress, and U

>cd06638 STKc_myosinIIIA Catalytic domain of the Protein Serine/Threonine Kinase, Class IIIA myosin

Probab=99.96  E-value=5.2e-30  Score=231.15  Aligned_cols=226  Identities=19%  Similarity=0.203  Sum_probs=162.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC----CCCCCCCcccccCCCCCcccccc----c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK----PSSPDNFSVDTIPNGVSVEERQN----D   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~e~~~gg~L~~~~~----~   91 (358)
                      .+|..+++|.+....  .....+.++.+....+ ..|.+++.......    .....+|+||||++||+|.+++.    .
T Consensus        41 ~~~~~~~ik~~~~~~--~~~~~~~~e~~~l~~l-~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~  117 (286)
T cd06638          41 KNGSKAAVKILDPIH--DIDEEIEAEYNILKAL-SDHPNVVKFYGMYYKKDVKNGDQLWLVLELCNGGSVTDLVKGFLKR  117 (286)
T ss_pred             CCCceeEEEeecccc--chHHHHHHHHHHHHHH-hcCCCeeeeeeeeeecccCCCCeEEEEEeecCCCCHHHHHHHhhcc
Confidence            356678888765422  1223444454444443 25667776655432    23456899999999999998764    2


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~  164 (358)
                      ...+.+..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|++.|+|||++.
T Consensus       118 ~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~  197 (286)
T cd06638         118 GERMEEPIIAYILHEALMGLQHLHVNKTIHRDVKGNNILLTTEGGVKLVDFGVSAQLTSTRLRRNTSVGTPFWMAPEVIA  197 (286)
T ss_pred             CccccHHHHHHHHHHHHHHHHHHHhCCccccCCCHHhEEECCCCCEEEccCCceeecccCCCccccccCCCcccChhhhc
Confidence            3456778899999999999999999999998    9999999999999999999765322   23447899999999986


Q ss_pred             C-----CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          165 G-----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       165 ~-----~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      .     ..++.++||||+||++|+|++|+.||....      ....   +.......+.                     
T Consensus       198 ~~~~~~~~~~~~~Dv~slGvi~~el~~g~~p~~~~~------~~~~---~~~~~~~~~~---------------------  247 (286)
T cd06638         198 CEQQLDSTYDARCDVWSLGITAIELGDGDPPLADLH------PMRA---LFKIPRNPPP---------------------  247 (286)
T ss_pred             hhhhccccccchhhhhhHHHHHHHHhcCCCCCCCCc------hhHH---HhhccccCCC---------------------
Confidence            3     347899999999999999999999996432      1111   1111000000                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                     ....+...+..+.+||.+||+.||++|||+.|+++|+||
T Consensus       248 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~~~~  286 (286)
T cd06638         248 ---------------TLHQPELWSNEFNDFIRKCLTKDYEKRPTVSDLLQHVFI  286 (286)
T ss_pred             ---------------cccCCCCcCHHHHHHHHHHccCCcccCCCHHHHhhcccC
Confidence                           001112235678999999999999999999999999997

Serine/threonine kinases (STKs), class IIIA myosin subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins containing an N-terminal kinase catalytic domain and a C-terminal actin-binding domain. Class III myosins may play an important role in maintaining the structural integrity of photoreceptor cell microvilli. In photoreceptor cells, they may also function as cargo carriers during light-dependent translocation of proteins such as transducin and arrestin. Class IIIA myosin is highly expressed in retina and in inner ear

>cd05577 STKc_GRK Catalytic domain of the Protein Serine/Threonine Kinase, G protein-coupled Receptor Kinase

Probab=99.96  E-value=4.4e-30  Score=230.71  Aligned_cols=230  Identities=18%  Similarity=0.195  Sum_probs=169.8

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--cc
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~   95 (358)
                      .+|..+++|.+......  .....+.++.+...+  +.+++++....... .....|+||||++|++|.+++....  .+
T Consensus        16 ~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~   92 (277)
T cd05577          16 ATGKMYACKKLDKKRLKKRKGEQMALNEKKILEK--VSSRFIVSLAYAFE-TKDDLCLVMTLMNGGDLKYHIYNVGEPGF   92 (277)
T ss_pred             CCCcEEEEEEEehhhhhhhhhhHHHHHHHHHHHh--CCCCCEeeeeeEEe-cCCeEEEEEecCCCCcHHHHHHHcCcCCC
Confidence            45777888887653322  222333444444444  34566666544433 3457899999999999999887544  67


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..+..++.+++.++.++|+.+++|+    +||++++++.+||+|||++.....  ......++..|+|||++.+..++
T Consensus        93 ~~~~~~~~~~ql~~~l~~lH~~~i~H~di~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  172 (277)
T cd05577          93 PEARAIFYAAQIICGLEHLHQRRIVYRDLKPENVLLDDHGNVRISDLGLAVELKGGKKIKGRAGTPGYMAPEVLQGEVYD  172 (277)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEECCCCCEEEccCcchhhhccCCccccccCCCCcCCHHHhcCCCCC
Confidence            888999999999999999999999999    899999999999999999865432  22344678899999999988899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|+.||.......   ....+...  ..                                    
T Consensus       173 ~~~Di~slG~il~~l~~g~~p~~~~~~~~---~~~~~~~~--~~------------------------------------  211 (277)
T cd05577         173 FSVDWFALGCTLYEMIAGRSPFRQRKEKV---EKEELKRR--TL------------------------------------  211 (277)
T ss_pred             chhhhHHHHHHHHHHhhCCCCCCCCcccc---cHHHHHhc--cc------------------------------------
Confidence            99999999999999999999996543211   01111000  00                                    


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                         ......+...++.+.++|.+||+.||.+||     ++.++++||||...
T Consensus       212 ---~~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~~ll~h~~~~~~  260 (277)
T cd05577         212 ---EMAVEYPDKFSPEAKDLCEALLQKDPEKRLGCRGGSADEVREHPLFKDL  260 (277)
T ss_pred             ---cccccCCccCCHHHHHHHHHHccCChhHccCCCcccHHHHHhChhhhcC
Confidence               001123334577899999999999999999     99999999999764

Serine/Threonine Kinases (STKs), G protein-coupled Receptor Kinase (GRK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The GRK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. GRKs phosphorylate and regulate G protein-coupled receptors (GPCRs), the largest superfamily of cell surface receptors, which regulate some part of nearly all physiological functions. Phosphorylated GPCRs bind to arrestins, which prevents further G protein signaling despite the presence of activating ligand. GRKs contain a central catalytic domain, flanked by N- and C-terminal extensions. The N-terminus contains an RGS (regulator of

>cd06656 STKc_PAK3 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 3

Probab=99.96  E-value=4.2e-30  Score=233.31  Aligned_cols=228  Identities=18%  Similarity=0.217  Sum_probs=169.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+...... ....+.++......  ..|.+++...+... .....|+||||++|++|.+++.. ..+.+.+
T Consensus        42 ~~~~~vaiK~~~~~~~~-~~~~~~~e~~~l~~--~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~  116 (297)
T cd06656          42 ATGQEVAIKQMNLQQQP-KKELIINEILVMRE--NKNPNIVNYLDSYL-VGDELWVVMEYLAGGSLTDVVTE-TCMDEGQ  116 (297)
T ss_pred             CCCCEEEEEEEecCccc-hHHHHHHHHHHHHh--CCCCCEeeEEEEEe-cCCEEEEeecccCCCCHHHHHHh-CCCCHHH
Confidence            56778899987643332 23445555544443  35666666554433 34578999999999999998854 3467788


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++......   .....+++.|+|||.+.+..++.++
T Consensus       117 ~~~~~~~l~~~L~~LH~~~i~H~dL~p~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  196 (297)
T cd06656         117 IAAVCRECLQALDFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV  196 (297)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEECcCccceEccCCccCcCcccCCccccCHHHHcCCCCCcHH
Confidence            99999999999999999999999    9999999999999999998764322   2344788999999999998899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+||+||++|+|++|..||.+....      ..+..+. ..+.+                                    
T Consensus       197 Di~slGvil~~l~tg~~pf~~~~~~------~~~~~~~-~~~~~------------------------------------  233 (297)
T cd06656         197 DIWSLGIMAIEMVEGEPPYLNENPL------RALYLIA-TNGTP------------------------------------  233 (297)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCcc------hheeeec-cCCCC------------------------------------
Confidence            9999999999999999999654310      0000000 00000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        ....+...+..+.+|+.+||..||++|||+.++++||||....
T Consensus       234 --~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~~  276 (297)
T cd06656         234 --ELQNPERLSAVFRDFLNRCLEMDVDRRGSAKELLQHPFLKLAK  276 (297)
T ss_pred             --CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhcccc
Confidence              0112233456788999999999999999999999999998653

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 3, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK3 belongs to group I. Group I PAKs contain a PBD (p21-binding domain) overlapping with an AID (autoinhibitory domain), a C-terminal catalytic domain, SH3 binding sites and a non-classical SH3 binding

>cd07842 STKc_CDK8_like Catalytic domain of Cyclin-Dependent protein Kinase 8-like Serine/Threonine Kinases

Probab=99.96  E-value=5.1e-30  Score=234.48  Aligned_cols=265  Identities=19%  Similarity=0.208  Sum_probs=175.8

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCccccccc-----c
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQND-----S   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~-----~   92 (358)
                      .|..+|+|.+.....  ......+.++......  ..+++++......... ...+|+||||+++ +|.+++..     .
T Consensus        26 ~~~~~alK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~  102 (316)
T cd07842          26 DGKEYAIKKFKGDKEQYTGISQSACREIALLRE--LKHENVVSLVEVFLEHADKSVYLLFDYAEH-DLWQIIKFHRQAKR  102 (316)
T ss_pred             CCCeEEEEEeccccccccCccHHHHHHHHHHHh--cCCCCccceEEEEeCCCCceEEEEEeCCCc-CHHHHHHhhccCCC
Confidence            577889998887432  1122344455544444  3566666655544333 3578999999986 45544431     1


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC----CCcEEEEecCCceecCCC------CCCCccCCCcc
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV----DVQCKLVDFGNACWTHKQ------FTNDIQTRQYR  158 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~----~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~  158 (358)
                      ..+.+..+..++.|++.++.++|+.+++|+    +|||++.    ++.+||+|||++......      ....++|..|+
T Consensus       103 ~~~~~~~~~~i~~qi~~~l~~lH~~~i~h~dlkp~Nil~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~  182 (316)
T cd07842         103 VSIPPSMVKSLLWQILNGVHYLHSNWVLHRDLKPANILVMGEGPERGVVKIGDLGLARLFNAPLKPLADLDPVVVTIWYR  182 (316)
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHhCCEeeCCCCHHHEEEcCCCCccceEEECCCccccccCCCcccccccCCcccccccc
Confidence            256778889999999999999999999999    9999999    899999999999765432      22347789999


Q ss_pred             hhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC---CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          159 CPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNY---DKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       159 aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~---~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      |||++.+. .++.++|||||||++++|++|++||.+......   ......+..+...++.+....+........+....
T Consensus       183 aPE~~~~~~~~~~~~Dv~slG~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  262 (316)
T cd07842         183 APELLLGARHYTKAIDIWAIGCIFAELLTLEPIFKGREAKIKKSNPFQRDQLERIFEVLGTPTEKDWPDIKKMPEYDTLM  262 (316)
T ss_pred             CHHHHhCCCCCCcHHHHHHHHHHHHHHHhcCCCCcCCcccccccchhHHHHHHHHHHHhCCCchhHHHHHhhcccchhhh
Confidence            99998875 489999999999999999999999976543321   11234556666667665554332111111110000


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                          ........+. .............+..+.++|.+||+.||++|||+.|+++||||
T Consensus       263 ----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~l~~~P~~Rps~~eil~~~~f  316 (316)
T cd07842         263 ----KDFKTKTYPS-NSLAKWMEKHKKPDSQGFDLLRKLLEYDPTKRITAEEALEHPYF  316 (316)
T ss_pred             ----hhccCCCCCC-ccHHHHHHhccCCCHHHHHHHHHHhcCCcccCcCHHHHhcCCCC
Confidence                0000000000 00011111112456788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 8 (CDK8)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK8-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK8, CDC2L6, and similar proteins. CDK8 functions as a negative or positive regulator of transcription, depending on the scenario. Together with its regulator, cyclin C, it reversibly associates with the

>KOG1095 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=3.5e-30  Score=255.60  Aligned_cols=218  Identities=16%  Similarity=0.146  Sum_probs=180.9

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------cc
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------VV   94 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------~~   94 (358)
                      .++||+|+|....+.++...+-+++.....  +.|++++........ .+..+|++|||+||+|..|+++.       ..
T Consensus       722 ~~~vaiK~l~~~~~~~~~~~Fl~Ea~~m~~--f~HpNiv~liGv~l~-~~~~~i~leyM~gGDL~sflr~~r~~~~~~~~  798 (1025)
T KOG1095|consen  722 PIQVAVKSLKRLSSEQEVSDFLKEALLMSK--FDHPNIVSLIGVCLD-SGPPLILLEYMEGGDLLSFLRESRPAPFQPSN  798 (1025)
T ss_pred             ceEEEEEeccccCCHHHHHHHHHHHHHHhc--CCCcceeeEEEeecC-CCCcEEEehhcccCcHHHHHHhcccccCCCCC
Confidence            456999999999999999999999988887  678999998888777 77889999999999999999865       34


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-CCCCCCcc----CCCcchhHHHhC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-KQFTNDIQ----TRQYRCPEVLLG  165 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-~~~~~~~g----t~~Y~aPE~l~~  165 (358)
                      +.......+..+++.|+.|+++.+.+||    .|+||+....+||+|||+|+... ..++..-|    ...|||||.+..
T Consensus       799 L~~~dLl~~a~dvA~G~~YLe~~~fvHRDLAaRNCLL~~~r~VKIaDFGlArDiy~~~yyr~~~~a~lPvkWm~PEsl~d  878 (1025)
T KOG1095|consen  799 LSMRDLLAFALDVAKGMNYLESKHFVHRDLAARNCLLDERRVVKIADFGLARDIYDKDYYRKHGEAMLPVKWMPPESLKD  878 (1025)
T ss_pred             CCHHHHHHHHHHHhhhhHHHHhCCCcCcchhhhheeecccCcEEEcccchhHhhhhchheeccCccccceecCCHHHHhh
Confidence            5667888899999999999999999999    89999999999999999998433 33332222    357999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 SKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      ..|+.++|||||||++||+++ |..||...+      ..+.+....+ -                               
T Consensus       879 ~iFtskSDvWsFGVllWEifslG~~PY~~~~------n~~v~~~~~~-g-------------------------------  920 (1025)
T KOG1095|consen  879 GIFTSKSDVWSFGVLLWEIFSLGATPYPSRS------NFEVLLDVLE-G-------------------------------  920 (1025)
T ss_pred             cccccccchhhhHHHHHHHHhCCCCCCCCcc------hHHHHHHHHh-C-------------------------------
Confidence            899999999999999999998 889997554      2222221110 0                               


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                               ...+.|..++..+.++|..||+.+|++||++..+++
T Consensus       921 ---------gRL~~P~~CP~~ly~lM~~CW~~~pe~RP~F~~i~~  956 (1025)
T KOG1095|consen  921 ---------GRLDPPSYCPEKLYQLMLQCWKHDPEDRPSFRTIVE  956 (1025)
T ss_pred             ---------CccCCCCCCChHHHHHHHHHccCChhhCccHHHHHh
Confidence                     123456777888999999999999999999999986

>cd05049 PTKc_Trk Catalytic domain of the Protein Tyrosine Kinases, Tropomyosin Related Kinases

Probab=99.96  E-value=6.9e-30  Score=229.56  Aligned_cols=219  Identities=15%  Similarity=0.145  Sum_probs=168.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      ++..+++|.+...........+.++.+.....  .+.+++........ ....|+||||++||+|.+++...        
T Consensus        34 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~  110 (280)
T cd05049          34 DKELVAVKTLKETASNDARKDFEREAELLTNF--QHENIVKFYGVCTE-GDPPIMVFEYMEHGDLNKFLRSHGPDAAFLK  110 (280)
T ss_pred             CcceEEEEeecccCCHHHHHHHHHHHHHHHhc--CCCCchheeeEEec-CCCeEEEEecCCCCCHHHHHHhcCCchhhhc
Confidence            34678999998877766778888887766653  56666665555443 36789999999999999988643        


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..+.+.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....+++.|
T Consensus       111 ~~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y  190 (280)
T cd05049         111 SPDSPMGELTLSQLLQIAVQIASGMVYLASQHFVHRDLATRNCLVGYDLVVKIGDFGMSRDVYTTDYYRVGGHTMLPIRW  190 (280)
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHhhCCeeccccccceEEEcCCCeEEECCcccceecccCcceecCCCCccccee
Confidence                  235677889999999999999999999998    9999999999999999999754321     1233557889


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +|||++.+..++.++|||||||++|+|++ |..||....      .......+..  +..                    
T Consensus       191 ~aPE~~~~~~~~~~~Di~slG~il~e~~~~g~~p~~~~~------~~~~~~~~~~--~~~--------------------  242 (280)
T cd05049         191 MPPESIMYRKFTTESDVWSFGVVLWEIFTYGKQPWYGLS------NEEVIECITQ--GRL--------------------  242 (280)
T ss_pred             cChhhhccCCcchhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CCc--------------------
Confidence            99999999899999999999999999998 999986443      1222222110  000                    


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                         ...+...+..+.+|+.+||+.||++|||+.|+++
T Consensus       243 -------------------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~eil~  276 (280)
T cd05049         243 -------------------LQRPRTCPSEVYDIMLGCWKRDPQQRINIKDIHE  276 (280)
T ss_pred             -------------------CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                               0112234678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase (Trk) subfamily; catalytic (c) domain. The Trk subfamily consists of TrkA, TrkB, TrkC, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Trk subfamily members are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, the nerve growth factor (NGF) family of neutrotrophins, leads to Trk receptor oligomerization and activation of the catalyt

>PHA03210 serine/threonine kinase US3; Provisional

Probab=99.96  E-value=4.1e-30  Score=248.92  Aligned_cols=238  Identities=18%  Similarity=0.169  Sum_probs=158.3

Q ss_pred             hhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----cccChhhhhHHHHhhhhccccccC
Q 045353           42 VKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----VVNNESSRDNEVKNTSQGVKGHRR  116 (358)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~h~  116 (358)
                      +.++......  +.|++++.+...... ....|+||+++.+ +|..++...     ......++..++.|++.|+.|+|+
T Consensus       210 ~~~Ei~il~~--l~HpnIv~l~~~~~~-~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~~~~~~~~~i~~ql~~aL~yLH~  285 (501)
T PHA03210        210 LENEILALGR--LNHENILKIEEILRS-EANTYMITQKYDF-DLYSFMYDEAFDWKDRPLLKQTRAIMKQLLCAVEYIHD  285 (501)
T ss_pred             HHHHHHHHHh--CCCCCcCcEeEEEEE-CCeeEEEEecccc-CHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444  467777777665443 3467899999865 455444321     112345677899999999999999


Q ss_pred             CCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCC
Q 045353          117 PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGD  188 (358)
Q Consensus       117 ~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~  188 (358)
                      .+++||    +|||++.++.+||+|||+|......    ....+||+.|+|||++.+..|+.++|||||||++|+|++|.
T Consensus       286 ~gIiHrDLKP~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlGvil~ell~~~  365 (501)
T PHA03210        286 KKLIHRDIKLENIFLNCDGKIVLGDFGTAMPFEKEREAFDYGWVGTVATNSPEILAGDGYCEITDIWSCGLILLDMLSHD  365 (501)
T ss_pred             CCeecCCCCHHHEEECCCCCEEEEeCCCceecCcccccccccccCCcCCCCchhhcCCCCCcHHHHHHHHHHHHHHHHCC
Confidence            999999    9999999999999999999765432    22457999999999999999999999999999999999987


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      .++.+....   ....++..+...++.....+...   ....+........ ... ....... ..    ....+.++.+
T Consensus       366 ~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~---~~~~~~~i~~~~~-~~~-~~~~~~~-~~----~~~~~~~~~~  432 (501)
T PHA03210        366 FCPIGDGGG---KPGKQLLKIIDSLSVCDEEFPDP---PCKLFDYIDSAEI-DHA-GHSVPPL-IR----NLGLPADFEY  432 (501)
T ss_pred             CCCccCCCC---CHHHHHHHHHHhcccChhhcCCc---HHHHHHHhhhhhc-ccC-ccchhhH-HH----hcCCChHHHH
Confidence            554332211   24556666666665443322110   0011110000000 000 0000000 00    1123467889


Q ss_pred             HHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          269 FLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       269 li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      +|.+||++||.+|||+.|+|+||||...
T Consensus       433 li~kmL~~DP~~Rpsa~elL~hp~f~~~  460 (501)
T PHA03210        433 PLVKMLTFDWHLRPGAAELLALPLFSAE  460 (501)
T ss_pred             HHHHHhccCcccCcCHHHHhhChhhhcC
Confidence            9999999999999999999999999864

>cd07840 STKc_CDK9_like Catalytic domain of Cyclin-Dependent protein Kinase 9-like Serine/Threonine Kinases

Probab=99.96  E-value=8.2e-30  Score=229.64  Aligned_cols=254  Identities=23%  Similarity=0.261  Sum_probs=180.9

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccc-cccC
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDS-VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~-~~~~   96 (358)
                      .+|..+++|.+.... .......+.++.....+.  .+++++......... ....|+||||+++ +|..++... ..+.
T Consensus        22 ~~~~~~~~K~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~   98 (287)
T cd07840          22 KTGELVALKKIRMENEKEGFPITAIREIKLLQKL--RHPNIVRLKEIVTSKGKGSIYMVFEYMDH-DLTGLLDSPEVKFT   98 (287)
T ss_pred             CCCeEEEEEEEecccccccchHHHHHHHHHHHhc--cCCCeeeheeeEecCCCCcEEEEeccccc-cHHHHHhccCCCCC
Confidence            356788999998775 222334555555555443  466666555544433 3789999999985 787777654 5678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......    .+...++..|+|||.+.+. .
T Consensus        99 ~~~~~~i~~~i~~al~~LH~~~~~h~dl~p~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  178 (287)
T cd07840          99 ESQIKCYMKQLLEGLQYLHSNGILHRDIKGSNILINNDGVLKLADFGLARPYTKRNSADYTNRVITLWYRPPELLLGATR  178 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEEcCCCCEEEccccceeeccCCCcccccccccccccCCceeeEcccc
Confidence            88999999999999999999999988    9999999999999999999765433    3445678899999988764 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||....      ....+..+.+.++.++...+...... .++.....        ...
T Consensus       179 ~~~~~Dv~slG~~l~el~t~~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~  243 (287)
T cd07840         179 YGPEVDMWSVGCILAELFLGKPIFQGST------ELEQLEKIFELCGSPTDENWPGVSKL-PWFENLKP--------KKP  243 (287)
T ss_pred             CChHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCchhhccccccc-hhhhhccc--------ccc
Confidence            7999999999999999999999997554      45666677777776655443221111 00000000        000


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      .......  .+...++..+.++|.+||..||.+|||+.++++||||
T Consensus       244 ~~~~~~~--~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~~~~  287 (287)
T cd07840         244 YKRRLRE--FFKHLIDPSALDLLDKLLTLDPKKRISADQALQHEYF  287 (287)
T ss_pred             chhHHHH--HhcccCCHHHHHHHHHHcCCChhhCcCHHHHhhCcCC
Confidence            0001110  1111136789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 9 (CDK9)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK9-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. This subfamily is composed of CDK9 and CDK12 from higher eukaryotes, yeast BUR1, C-type plant CDKs (CdkC), and similar proteins. CDK9, BUR1, and CdkC are functionally equivalent. They act as a kinase for the C-terminal domain of RNA po

>cd07829 STKc_CDK_like Catalytic domain of Cyclin-Dependent protein Kinase-like Serine/Threonine Kinases

Probab=99.96  E-value=1.5e-29  Score=227.41  Aligned_cols=251  Identities=22%  Similarity=0.268  Sum_probs=181.7

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccCh
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      .+|..+++|.+.....+ .....+..+.......  .+.+++........ ....|+||||+++ +|.+++... ..+++
T Consensus        22 ~~~~~~~iK~~~~~~~~~~~~~~~~~e~~~l~~~--~~~~i~~~~~~~~~-~~~~~~v~e~~~~-~l~~~i~~~~~~~~~   97 (282)
T cd07829          22 KTGEIVALKKIRLDNEEEGIPSTALREISLLKEL--KHPNIVKLLDVIHT-ERKLYLVFEYCDM-DLKKYLDKRPGPLSP   97 (282)
T ss_pred             CCCcEEEEEEeccccccccccHHHHHHHHHHHhc--CCCCHHHHHhhhhc-CCceEEEecCcCc-CHHHHHHhhccCCCH
Confidence            35778899988876522 2234444554444442  35555555444332 3688999999985 899988765 56888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......   .....++..|+|||++.+. .++
T Consensus        98 ~~~~~~~~~i~~~l~~LH~~~i~H~~l~~~ni~~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~  177 (282)
T cd07829          98 NLIKSIMYQLLRGLAYCHSHRILHRDLKPQNILINRDGVLKLADFGLARAFGIPLRTYTHEVVTLWYRAPEILLGSKHYS  177 (282)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCChheEEEcCCCCEEEecCCcccccCCCccccCccccCcCcCChHHhcCCcCCC
Confidence            9999999999999999999999999    9999999999999999999765432   2344567889999999877 689


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++++|++|.+||.+..      ....+..+.+.++.+....+........+......         +...
T Consensus       178 ~~~Dv~slG~~l~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~  242 (282)
T cd07829         178 TAVDIWSVGCIFAEMITGKPLFPGDS------EIDQLFKIFQILGTPTEESWPGVTKLPDYKPTFPK---------FPPK  242 (282)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHHHhCCCcHHHHHhhcccccccccccc---------cCcc
Confidence            99999999999999999999997654      46677777888877766554332221100000000         0000


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                      ..    ....+..+..+.++|.+||..||++|||+.+++.||||
T Consensus       243 ~~----~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~~l~~p~~  282 (282)
T cd07829         243 DL----EKVLPRLDPEGIDLLSKMLQYNPAKRISAKEALKHPYF  282 (282)
T ss_pred             ch----HHhcccccHHHHHHHHHhhccCcccCCCHHHHhhCcCC
Confidence            00    01112236789999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase (CDK)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDKs are partly regulated by their subcellular localization, which defines substrate phosphorylation and the resulting specific function. CDK1, CDK2, CDK4, and CDK6 have well-defined functions in the cell cycle, such as the regulation of the

>cd00192 PTKc Catalytic domain of Protein Tyrosine Kinases

Probab=99.96  E-value=1.5e-29  Score=224.45  Aligned_cols=219  Identities=18%  Similarity=0.239  Sum_probs=175.0

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---------   92 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---------   92 (358)
                      +..+++|.+...........+.++.+.....  .+.+++........ ....|+||||+.||+|.+++...         
T Consensus        23 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~~--~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~   99 (262)
T cd00192          23 TTEVAVKTLKEDASEEERKDFLKEARVMKKL--GHPNVVRLLGVCTE-EEPLYLVLEYMEGGDLLDYLRKSRPVFPSPEK   99 (262)
T ss_pred             CceEEeEeeccccchhHHHHHHHHHHHHhhc--CCCChheeeeeecC-CCceEEEEEeccCCcHHHHHhhcccccccccc
Confidence            6788999999888777777787777766664  36666666554443 67889999999999999998875         


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l  163 (358)
                      ..+++.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||.+......     .....++..|+|||.+
T Consensus       100 ~~~~~~~~~~~~~~l~~al~~lH~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~  179 (262)
T cd00192         100 STLSLKDLLSFAIQIAKGMEYLASKKFVHRDLAARNCLVGEDLVVKISDFGLSRDVYDDDYYRKKTGGKLPIRWMAPESL  179 (262)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHcCCcccCccCcceEEECCCCcEEEcccccccccccccccccccCCCcCccccCHHHh
Confidence            678999999999999999999999999999    8999999999999999999765432     3344678899999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+..++.++||||+||++|+|++ |..||....      .......+..  +.                           
T Consensus       180 ~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~~---------------------------  224 (262)
T cd00192         180 KDGIFTSKSDVWSFGVLLWEIFTLGATPYPGLS------NEEVLEYLRK--GY---------------------------  224 (262)
T ss_pred             ccCCcchhhccHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CC---------------------------
Confidence            98889999999999999999998 699996542      2222222111  00                           


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                  ....+...+.++.+++.+||..||++|||+.+++++
T Consensus       225 ------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  260 (262)
T cd00192         225 ------------RLPKPEYCPDELYELMLSCWQLDPEDRPTFSELVER  260 (262)
T ss_pred             ------------CCCCCccCChHHHHHHHHHccCCcccCcCHHHHHHh
Confidence                        112233446789999999999999999999999875

Protein Tyrosine Kinase (PTK) family, catalytic domain. This PTKc family is part of a larger superfamily that includes the catalytic domains of protein serine/threonine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. They can be classified into receptor and non-receptor tyr kinases. PTKs play important roles in many cellular processes including, lymphocyte activation, epithelium growth and maintenance, metabolism control, organogenesis regulation, survival, proliferation, differentiation, migration, adhesion, motility, and morphogenesis. Receptor tyr kinases (RTKs) are integral membrane proteins which contain an extracellular ligand-binding region, a transmembrane segment, and an intracellular tyr kinase domain. RTKs are usually activated through ligan

>cd05118 STKc_CMGC Catalytic domain of CMGC family Serine/Threonine Kinases

Probab=99.96  E-value=1.4e-29  Score=227.78  Aligned_cols=252  Identities=24%  Similarity=0.242  Sum_probs=180.2

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      ++|..+++|.+...... ....++.++.+.....  .+.+++....... .....|+||||+.+ +|.+++.. ...+++
T Consensus        22 ~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~~v~e~~~~-~l~~~l~~~~~~~~~   97 (283)
T cd05118          22 LTGEIVAIKKIKLRFESEGIPKTALREIKLLKEL--NHPNIIKLLDVFR-HKGDLYLVFEFMDT-DLYKLIKDRQRGLPE   97 (283)
T ss_pred             CCCcEEEEEEeccccccchhHHHHHHHHHHHHHh--cCCCcchHHHhhc-cCCCEEEEEeccCC-CHHHHHHhhcccCCH
Confidence            46777888887765443 3445555565555543  4566665555433 33678999999986 77766654 456788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||.+......   .....++..|+|||.+.+. .++
T Consensus        98 ~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~  177 (283)
T cd05118          98 SLIKSYLYQLLQGLAFCHSHGILHRDLKPENLLINTEGVLKLADFGLARSFGSPVRPYTHYVVTRWYRAPELLLGDKGYS  177 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCcCHHHEEECCCCcEEEeeeeeeEecCCCcccccCccCcccccCcHHHhcCCCCC
Confidence            8999999999999999999999988    9999999999999999999765443   2345688899999999887 689


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|+.||...+      ..+.+..+.+.++.+....+.............     ........  
T Consensus       178 ~~~Di~slG~~l~~l~tg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--  244 (283)
T cd05118         178 TPVDIWSVGCIFAELLSRRPLFPGKS------EIDQLFKIFRTLGTPDPEVWPKFTSLARNYKFS-----FPKKAGMP--  244 (283)
T ss_pred             chhHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCchHhcccchhhhhhhhhh-----hccccccC--
Confidence            99999999999999999999997654      455666666666665444333222111110000     00000000  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           .....+..+..+.+||.+||..||.+||++.+++.||||
T Consensus       245 -----~~~~~~~~~~~~~~~i~~~l~~~P~~Rp~~~~ll~~~~~  283 (283)
T cd05118         245 -----LPKLFPNASPQALDLLSQMLHYDPHKRITAEQALAHPYF  283 (283)
T ss_pred             -----HHHhhhhhCHHHHHHHHHHhccCcccCcCHHHHhhCCCC
Confidence                 001123457889999999999999999999999999997

Serine/Threonine Kinases (STKs), CMGC family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CMGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The CMGC family consists of Cyclin-Dependent protein Kinases (CDKs), Mitogen-activated protein kinases (MAPKs) such as Extracellular signal-regulated kinase (ERKs), c-Jun N-terminal kinases (JNKs), and p38, and similar proteins. CDKs belong to a large subfamily of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. MAPKs serve as important mediators of cellular responses to extracellular signals. They

>cd05106 PTKc_CSF-1R Catalytic domain of the Protein Tyrosine Kinase, Colony-Stimulating Factor-1 Receptor

Probab=99.96  E-value=8e-30  Score=238.63  Aligned_cols=220  Identities=13%  Similarity=0.130  Sum_probs=163.4

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---------   92 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---------   92 (358)
                      +..||+|.+...........+.++.+....+ ..|.+++........ ....|+|||||.||+|.+++...         
T Consensus        68 ~~~vavK~~~~~~~~~~~~~~~~E~~il~~l-~~h~nIv~~~~~~~~-~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~  145 (374)
T cd05106          68 VLRVAVKMLKASAHTDEREALMSELKILSHL-GQHKNIVNLLGACTH-GGPVLVITEYCCYGDLLNFLRKKAETFLNFVM  145 (374)
T ss_pred             cceeEEEeccCCCCHHHHHHHHHHHHHHHhh-ccCCceeeEeeEecC-CCCeEEeHhhccCCcHHHHHHhhhhhhccccc
Confidence            3468999998776666666777776665553 257777777665443 45789999999999999876421         


Q ss_pred             -------------------------------------------------------------cccChhhhhHHHHhhhhcc
Q 045353           93 -------------------------------------------------------------VVNNESSRDNEVKNTSQGV  111 (358)
Q Consensus        93 -------------------------------------------------------------~~~~~~~~~~~l~~~~~~~  111 (358)
                                                                                   ..+++.++..++.+++.++
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL  225 (374)
T cd05106         146 ALPEISETSSDYKNITLEKKYIRSDSGFSSQGSDTYVEMRPVSSSSSQSSDSKDEEDTEDSWPLDLDDLLRFSSQVAQGM  225 (374)
T ss_pred             cccccccccccccccchhcccccccccccccccccccccCCccccccccccccchhccCCCCCcCHHHHHHHHHHHHHHH
Confidence                                                                         1245567889999999999


Q ss_pred             ccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCcchhhhhhhHHHH
Q 045353          112 KGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYSTSADLWSFACICF  182 (358)
Q Consensus       112 ~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~  182 (358)
                      .|+|+.+++||    +|||+++++.+||+|||++.......     ....++..|+|||++.+..++.++|||||||++|
T Consensus       226 ~yLH~~giiHrDLkp~Nil~~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlGvil~  305 (374)
T cd05106         226 DFLASKNCIHRDVAARNVLLTDGRVAKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLW  305 (374)
T ss_pred             HHHHHCCEEeccCchheEEEeCCCeEEEeeceeeeeccCCcceeeccCCCCccceeCHHHhcCCCCCccccHHHHHHHHH
Confidence            99999999999    99999999999999999997643221     1223456799999999888999999999999999


Q ss_pred             hhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChh
Q 045353          183 ELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNER  261 (358)
Q Consensus       183 ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (358)
                      +|++ |..||.....     .. ....+... +.                                       ....+..
T Consensus       306 ellt~G~~Pf~~~~~-----~~-~~~~~~~~-~~---------------------------------------~~~~~~~  339 (374)
T cd05106         306 EIFSLGKSPYPGILV-----NS-KFYKMVKR-GY---------------------------------------QMSRPDF  339 (374)
T ss_pred             HHHhCCCCCCccccc-----cH-HHHHHHHc-cc---------------------------------------CccCCCC
Confidence            9997 9999964321     11 11111100 00                                       0011222


Q ss_pred             hHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          262 DAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       262 ~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      .++++.++|.+||+.||++|||+.++++
T Consensus       340 ~~~~l~~li~~cl~~dp~~RPs~~~l~~  367 (374)
T cd05106         340 APPEIYSIMKMCWNLEPTERPTFSQISQ  367 (374)
T ss_pred             CCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence            3678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Colony-Stimulating Factor-1 Receptor (CSF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CSF-1R, also called c-Fms, is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of CSF-1R to its ligand, CSF-1, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. CSF-1R signaling is criti

>cd06608 STKc_myosinIII_like Catalytic domain of Class III myosin-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=5.6e-30  Score=229.17  Aligned_cols=225  Identities=20%  Similarity=0.191  Sum_probs=163.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-----CCCCCCCcccccCCCCCccccccc----
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-----PSSPDNFSVDTIPNGVSVEERQND----   91 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv~e~~~gg~L~~~~~~----   91 (358)
                      ++..+++|+......  ....++++....... ..|.+++.......     ......|+||||+++++|.+++..    
T Consensus        30 ~~~~~~~k~~~~~~~--~~~~~~~e~~~l~~~-~~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~  106 (275)
T cd06608          30 TGQLVAIKIMDIIED--EEEEIKEEYNILRKY-SNHPNIATFYGAFIKKNPPGNDDQLWLVMELCGGGSVTDLVKGLRKK  106 (275)
T ss_pred             CCcEEEEEEEecCch--hHHHHHHHHHHHHHh-cCCCChheEEEEEEecCCCCcceEEEEEEEcCCCCcHHHHHHHHhhc
Confidence            456778888765432  334555555544443 24555555444322     224567999999999999998764    


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~  164 (358)
                      ...+.+..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|+..|+|||++.
T Consensus       107 ~~~~~~~~~~~~~~ql~~al~~lH~~~i~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  186 (275)
T cd06608         107 GKRLKEEWIAYILRETLRGLAYLHENKVIHRDIKGQNILLTKNAEVKLVDFGVSAQLDSTLGRRNTFIGTPYWMAPEVIA  186 (275)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHhcCCcccCCCCHHHEEEccCCeEEECCCccceecccchhhhcCccccccccCHhHhc
Confidence            3467888999999999999999999999998    9999999999999999998654322   23457899999999986


Q ss_pred             CC-----CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          165 GS-----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       165 ~~-----~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ..     .++.++|||||||++|+|++|..||....      ....+..+   ....+.                     
T Consensus       187 ~~~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~---~~~~~~---------------------  236 (275)
T cd06608         187 CDEQPDASYDARSDVWSLGITAIELADGKPPLCDMH------PMRALFKI---PRNPPP---------------------  236 (275)
T ss_pred             ccccccCCccccccHHHhHHHHHHHHhCCCCccccc------hHHHHHHh---hccCCC---------------------
Confidence            43     36888999999999999999999996332      11111111   111000                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                     ....+...+..+.+||.+||..||++|||+.++++|||+
T Consensus       237 ---------------~~~~~~~~~~~~~~li~~~l~~dp~~Rpt~~~ll~~~~~  275 (275)
T cd06608         237 ---------------TLKSPENWSKKFNDFISECLIKNYEQRPFMEELLEHPFI  275 (275)
T ss_pred             ---------------CCCchhhcCHHHHHHHHHHhhcChhhCcCHHHHhcCCCC
Confidence                           001112235688999999999999999999999999996

Serine/threonine kinases (STKs), Class III myosin-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The class III myosin-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Class III myosins are motor proteins with an N-terminal kinase catalytic domain and a C-terminal actin-binding motor domain. Class III myosins are present in the photoreceptors of invertebrates and vertebrates and in the auditory hair cells of mammals. The kinase domain of myosin III can phosphorylate several cytoskeletal proteins, conventional myosin regulatory light chains, and can autophosphorylate the C-terminal motor domain. Myosin I

>cd05048 PTKc_Ror Catalytic Domain of the Protein Tyrosine Kinases, Receptor tyrosine kinase-like Orphan Receptors

Probab=99.96  E-value=7e-30  Score=229.96  Aligned_cols=218  Identities=14%  Similarity=0.157  Sum_probs=167.2

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----------   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----------   92 (358)
                      ..+++|.+........+..++++.+...+  ..+++++....... .....|++|||+++|+|.+++...          
T Consensus        36 ~~v~~K~~~~~~~~~~~~~~~~ei~~l~~--l~h~~i~~~~~~~~-~~~~~~~~~e~~~~~~L~~~l~~~~~~~~~~~~~  112 (283)
T cd05048          36 TSVAIKTLKENAEPKVQQEFRQEAELMSD--LQHPNIVCLLGVCT-KEQPTCMLFEYLAHGDLHEFLVRNSPHSDVGAES  112 (283)
T ss_pred             eeEEEEecccCCCHHHHHHHHHHHHHHHh--cCCcccceEEEEEc-CCCceEEEEecCCCCcHHHHHHhcCCCccccccc
Confidence            46889998877777777777777776655  35666665554433 345689999999999999987643          


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..++...+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......     .....+++.|
T Consensus       113 ~~~~~~~~l~~~~~~~~~~~l~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~~y  192 (283)
T cd05048         113 GDETVKSSLDCSDFLHIAIQIAAGMEYLSSHHFVHRDLAARNCLVGEGLTVKISDFGLSRDIYSADYYRVQSKSLLPVRW  192 (283)
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeccccccceEEEcCCCcEEECCCcceeeccccccccccCCCcccccc
Confidence                  335667788999999999999999999998    9999999999999999999764322     2334668889


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +|||.+.+..++.++|||||||++|+|++ |..||.+.+      ..+....+..  +.                     
T Consensus       193 ~aPE~~~~~~~~~~sDv~slG~il~el~~~g~~p~~~~~------~~~~~~~i~~--~~---------------------  243 (283)
T cd05048         193 MPPEAILYGKFTTESDIWSFGVVLWEIFSYGLQPYYGFS------NQEVIEMIRS--RQ---------------------  243 (283)
T ss_pred             cCHHHhccCcCchhhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC---------------------
Confidence            99999998889999999999999999998 999997543      1221111110  00                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                        ....+..++..+.+|+.+||+.||.+|||+.+++++
T Consensus       244 ------------------~~~~~~~~~~~~~~l~~~c~~~~p~~Rp~~~~i~~~  279 (283)
T cd05048         244 ------------------LLPCPEDCPARVYALMIECWNEIPARRPRFKDIHTR  279 (283)
T ss_pred             ------------------cCCCcccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                              011234457889999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor (Ror) subfamily; catalytic (c) domain. The Ror subfamily consists of Ror1, Ror2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimer

>cd08221 STKc_Nek9 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 9

Probab=99.96  E-value=9.7e-30  Score=225.60  Aligned_cols=224  Identities=18%  Similarity=0.196  Sum_probs=173.0

Q ss_pred             ccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           20 ESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      ++|..+++|.+.- ..+....+++.++.....+.  .+.+++...+.... ...+++|||||+||+|.+++...  ..++
T Consensus        23 ~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~~--~h~~i~~~~~~~~~-~~~~~~~~e~~~~~~L~~~~~~~~~~~~~   99 (256)
T cd08221          23 EDDSLVVWKEVNLTRLSEKERRDALNEIVILSLL--QHPNIIAYYNHFMD-DNTLLIEMEYANGGTLYDKIVRQKGQLFE   99 (256)
T ss_pred             CCCcEEEEEEEeecccchhHHHHHHHHHHHHHhC--CCCCeeEEEeEEec-CCeEEEEEEecCCCcHHHHHHhccccCCC
Confidence            4566777776654 35566667777777666664  56666666555433 46789999999999999988754  4578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|++.|+|||++.+..++
T Consensus       100 ~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~~y~ape~~~~~~~~  179 (256)
T cd08221         100 EEMVLWYLFQIVSAVSYIHKAGILHRDIKTLNIFLTKAGLIKLGDFGISKILGSEYSMAETVVGTPYYMSPELCQGVKYN  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccCCChHhEEEeCCCCEEECcCcceEEcccccccccccCCCccccCHhhcCCCCCC
Confidence            88999999999999999999999988    9999999999999999999765432   2345789999999999988889


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++|+|++|..||....      .......+.  .+..+                                
T Consensus       180 ~~~Dv~slG~i~~~l~~g~~~~~~~~------~~~~~~~~~--~~~~~--------------------------------  219 (256)
T cd08221         180 FKSDIWALGCVLYELLTLKRTFDATN------PLNLVVKIV--QGNYT--------------------------------  219 (256)
T ss_pred             CcchhHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHH--cCCCC--------------------------------
Confidence            99999999999999999999996432      122222211  11110                                


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                             ..+...+..+.++|.+||..||.+|||+.++|+|||+
T Consensus       220 -------~~~~~~~~~~~~~i~~~l~~~p~~R~s~~~ll~~~~l  256 (256)
T cd08221         220 -------PVVSVYSSELISLVHSLLQQDPEKRPTADEVLDQPLL  256 (256)
T ss_pred             -------CCccccCHHHHHHHHHHcccCcccCCCHHHHhhCcCC
Confidence                   0112346778999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 9 (Nek9) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek9 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek9, also called Nercc1, is primarily a cytoplasmic protein but can also localize in the nucleus. It is involved in modulating chromosome alignment and splitting during mitosis. It interacts with the gamma-tubulin ring complex and the Ran GTPase, and is implicated in microtubule organization. Nek9 associa

>cd08217 STKc_Nek2 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 2

Probab=99.96  E-value=1.2e-29  Score=225.69  Aligned_cols=225  Identities=17%  Similarity=0.202  Sum_probs=170.7

Q ss_pred             ccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc----cc
Q 045353           20 ESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND----SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~----~~   93 (358)
                      .+|..+++|.+.. ..++.+..++..+.+....  ..+.+++....... ......|++|||+++++|.+++..    ..
T Consensus        23 ~~~~~~~~k~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~~~~~~~~~~~e~~~~~~L~~~l~~~~~~~~  100 (265)
T cd08217          23 SDGKILVWKEIDYGNMTEKEKQQLVSEVNILRE--LKHPNIVRYYDRIIDRSNQTLYIVMEYCEGGDLAQLIQKCKKERK  100 (265)
T ss_pred             CCCCEEEEEEEecccCCHHHHHHHHHHHHHHHh--cCCCccceeeeeeecCCCCEEEEEehhccCCCHHHHHHHHhhccc
Confidence            4566788888765 4555566666666655554  35566666554332 234567999999999999988764    34


Q ss_pred             ccChhhhhHHHHhhhhcccccc-----CCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHR-----RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h-----~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE  161 (358)
                      .+++..+..++.+++.++.++|     +.+++|+    +||+++.++.+||+|||++......   .....|++.|+|||
T Consensus       101 ~l~~~~~~~~~~~i~~~l~~lH~~~~~~~~i~h~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~pE  180 (265)
T cd08217         101 YIEEEFIWRILTQLLLALYECHNRSDPGNTVLHRDLKPANIFLDANNNVKLGDFGLAKILGHDSSFAKTYVGTPYYMSPE  180 (265)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCccccCcceecCCCHHHEEEecCCCEEEecccccccccCCcccccccccCCCccChh
Confidence            5778889999999999999999     8889987    9999999999999999999765432   23457899999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..++.++|+||||+++++|++|..||....      .......+..  +.                          
T Consensus       181 ~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~--------------------------  226 (265)
T cd08217         181 QLNHMSYDEKSDIWSLGCLIYELCALSPPFTARN------QLQLASKIKE--GK--------------------------  226 (265)
T ss_pred             hhcCCCCCchhHHHHHHHHHHHHHHCCCcccCcC------HHHHHHHHhc--CC--------------------------
Confidence            9998889999999999999999999999996433      1111111100  00                          


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                   ....+...+..+.+++.+||..+|++|||+.++++|||+
T Consensus       227 -------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~il~~~~~  265 (265)
T cd08217         227 -------------FRRIPYRYSSELNEVIKSMLNVDPDKRPSTEELLQLPLI  265 (265)
T ss_pred             -------------CCCCccccCHHHHHHHHHHccCCcccCCCHHHHhhCCCC
Confidence                         001233446788999999999999999999999999996

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 2 (Nek2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek2 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek2 subfamily includes Aspergillus nidulans NIMA kinase, the founding member of the Nek family, which was identified in a screen for cell cycle mutants prevented from entering mitosis. NIMA is essential for mitotic entry and progression through mitosis, and its degradation is essential for mitotic exi

>cd06648 STKc_PAK_II Catalytic domain of the Protein Serine/Threonine Kinase, Group II p21-activated kinase

Probab=99.96  E-value=7e-30  Score=230.44  Aligned_cols=227  Identities=17%  Similarity=0.207  Sum_probs=168.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..+++|.+.... ....+.+.++......  ..+++++....... .....|+|+||+.|++|.+++.. ..++...+
T Consensus        43 ~~~~~~iK~~~~~~-~~~~~~~~~e~~~l~~--~~h~~vv~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~-~~~~~~~~  117 (285)
T cd06648          43 TGRQVAVKKMDLRK-QQRRELLFNEVVIMRD--YQHPNIVEMYSSYL-VGDELWVVMEFLEGGALTDIVTH-TRMNEEQI  117 (285)
T ss_pred             CCCEEEEEEEeccc-hhHHHHHHHHHHHHHH--cCCCChheEEEEEE-cCCeEEEEEeccCCCCHHHHHHh-CCCCHHHH
Confidence            45678888764322 2233445555544443  45666666655433 34567999999999999998876 45778889


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.+++.++.++|+.+++|+    +||+++.++.++|+|||.+......   .....|++.|+|||++.+..++.++|
T Consensus       118 ~~~~~ql~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  197 (285)
T cd06648         118 ATVCLAVLKALSFLHAQGVIHRDIKSDSILLTSDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPEVISRLPYGTEVD  197 (285)
T ss_pred             HHHHHHHHHHHHHHHhCCeecCCCChhhEEEcCCCcEEEcccccchhhccCCcccccccCCccccCHHHhcCCCCCCccc
Confidence            9999999999999999999999    9999999999999999988654322   22346899999999999888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||+||++|+|++|..||....      .......+.   ...+.                                   
T Consensus       198 v~slGv~l~ell~g~~p~~~~~------~~~~~~~~~---~~~~~-----------------------------------  233 (285)
T cd06648         198 IWSLGIMVIEMVDGEPPYFNEP------PLQAMKRIR---DNLPP-----------------------------------  233 (285)
T ss_pred             HHHHHHHHHHHHhCCCCCcCCC------HHHHHHHHH---hcCCC-----------------------------------
Confidence            9999999999999999996432      112222111   11100                                   


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                       ....+...+..+.+||.+||..||++|||+.++++||||....
T Consensus       234 -~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~~  276 (285)
T cd06648         234 -KLKNLHKVSPRLRSFLDRMLVRDPAQRATAAELLNHPFLAKAG  276 (285)
T ss_pred             -CCcccccCCHHHHHHHHHHcccChhhCcCHHHHccCcccccCC
Confidence             0001112356889999999999999999999999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group II, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. Group II PAKs, also called non-conventional PAKs, include PAK4, PAK5, and PAK6. Group II PAKs contain PBD (p21-binding domain) and catalytic domains, but lack other motifs foun

>cd07864 STKc_CDK12 Catalytic domain of the Serine/Threonine Kinase, Cyclin-Dependent protein Kinase 12

Probab=99.96  E-value=1.5e-29  Score=229.97  Aligned_cols=252  Identities=22%  Similarity=0.228  Sum_probs=175.5

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC---------CCCCCcccccCCCCCcccccc
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS---------SPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      +|..+++|.+..... ......+.++.+....  ..+++++.........         ...+|+||||+++ ++..++.
T Consensus        31 ~~~~v~iK~~~~~~~~~~~~~~~~~e~~~~~~--l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~l~  107 (302)
T cd07864          31 TGELVALKKVRLDNEKEGFPITAIREIKILRQ--LNHRNIVNLKEIVTDKQDALDFKKDKGAFYLVFEYMDH-DLMGLLE  107 (302)
T ss_pred             CCcEEEEEEEeecccccCchHHHHHHHHHHHh--CCCCCeeeeeheecCcchhhhccccCCcEEEEEcccCc-cHHHHHh
Confidence            466788888865432 2233445555554444  3566666655443222         2478999999997 4555554


Q ss_pred             c-ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhH
Q 045353           91 D-SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPE  161 (358)
Q Consensus        91 ~-~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE  161 (358)
                      . ...+++.++..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......    .....++..|+|||
T Consensus       108 ~~~~~~~~~~~~~i~~qi~~aL~~LH~~~i~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE  187 (302)
T cd07864         108 SGLVHFSEDHIKSFMKQLLEGLNYCHKKNFLHRDIKCSNILLNNKGQIKLADFGLARLYNSEESRPYTNKVITLWYRPPE  187 (302)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCcEEeCcccccccccCCcccccccceeccCccChH
Confidence            3 3457888999999999999999999999998    8999999999999999999765322    22335688899999


Q ss_pred             HHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+. .++.++||||+||++|+|++|++||...+      ....+..+.+.++.++...+........+........  
T Consensus       188 ~~~~~~~~~~~~Di~slG~~~~el~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  259 (302)
T cd07864         188 LLLGEERYGPAIDVWSCGCILGELFTKKPIFQANQ------ELAQLELISRLCGSPCPAVWPDVIKLPYFNTMKPKKQ--  259 (302)
T ss_pred             HhcCCCCCCchhHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhhcccccccccccccccccc--
Confidence            98764 47899999999999999999999997544      5677777888877766544322111111000000000  


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                             ......   ......+..+.+||.+||..||.+|||+.+++.||||
T Consensus       260 -------~~~~~~---~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~~~~  302 (302)
T cd07864         260 -------YRRRLR---EEFSFIPTPALDLLDHMLTLDPSKRCTAEEALNSPWL  302 (302)
T ss_pred             -------cccchh---hhcCCCCHHHHHHHHHHccCChhhCCCHHHHhcCCCC
Confidence                   000000   0111236788999999999999999999999999997

Serine/Threonine Kinases (STKs), Cyclin-Dependent protein Kinase 12 (CDK12) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK12 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK12 is also called Cdc2-related protein kinase 7 (CRK7) or Cdc2-related kinase arginine/serine-rich (CrkRS). It is a unique CDK that contains an arginine/serine-rich (RS) domain, which is predominantly found in splicing factors. CDK12 is widely

>cd06632 STKc_MEKK1_plant Catalytic domain of the Protein Serine/Threonine Kinase, Plant MAP/ERK kinase kinase 1

Probab=99.96  E-value=1.2e-29  Score=225.06  Aligned_cols=224  Identities=18%  Similarity=0.192  Sum_probs=170.1

Q ss_pred             cCcccccccccCcc----chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           21 SSASKENKSLYGDL----TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        21 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      +|..+++|.+...-    ++...+.+.++......  ..+++++...... ......|+||||++|++|.+++.....++
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  100 (258)
T cd06632          24 DGDFFAVKEVSLADDGQTGQEAVKQLEQEIALLSK--LQHPNIVQYLGTE-REEDNLYIFLELVPGGSLAKLLKKYGSFP  100 (258)
T ss_pred             CCcEEEEEEEEEccccccchHHHHHHHHHHHHHHh--cCCCCchheeeeE-ecCCeEEEEEEecCCCcHHHHHHhcCCCC
Confidence            67889999875432    22333455555554444  3566666655543 34467899999999999999988766678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC-CC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK-YS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~-~~  169 (358)
                      +..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......  .....|+..|++||.+.... ++
T Consensus       101 ~~~~~~~~~~i~~~l~~lH~~~i~H~dl~~~ni~~~~~~~~kl~d~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~  180 (258)
T cd06632         101 EPVIRLYTRQILLGLEYLHDRNTVHRDIKGANILVDTNGVVKLADFGMAKQVVEFSFAKSFKGSPYWMAPEVIAQQGGYG  180 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEccCccceeccccccccccCCCcceeCHHHhcCCCCCC
Confidence            88899999999999999999999998    9999999999999999998765432  34557899999999998776 89


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++|+|++|..||....      .......+... +.                                  
T Consensus       181 ~~~D~~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~-~~----------------------------------  219 (258)
T cd06632         181 LAADIWSLGCTVLEMATGKPPWSQLE------GVAAVFKIGRS-KE----------------------------------  219 (258)
T ss_pred             chhhhHHHHHHHHHHHhCCCCcccCc------HHHHHHHHHhc-cc----------------------------------
Confidence            99999999999999999999996432      11111111100 00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           ....+...+..+.+|+.+||+.+|.+|||+.+++.|||+
T Consensus       220 -----~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~~~~  258 (258)
T cd06632         220 -----LPPIPDHLSDEAKDFILKCLQRDPSLRPTAAELLEHPFV  258 (258)
T ss_pred             -----CCCcCCCcCHHHHHHHHHHhhcCcccCcCHHHHhcCCCC
Confidence                 011233446788999999999999999999999999997

Serine/threonine kinases (STKs), plant MAP/ERK kinase kinase 1 (MEKK1)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The plant MEKK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily is composed of plant mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) including Arabidopsis thaliana MEKK1 and MAPKKK3. MEKK1 is a MAPKKK that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Arabidops

>cd05054 PTKc_VEGFR Catalytic domain of the Protein Tyrosine Kinases, Vascular Endothelial Growth Factor Receptors

Probab=99.96  E-value=1e-29  Score=234.72  Aligned_cols=223  Identities=16%  Similarity=0.132  Sum_probs=166.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      ++..||+|.+.........+.+.++.....+. ..+.+++.........+..+|++|||+.||+|.+++...        
T Consensus        36 ~~~~va~K~~~~~~~~~~~~~~~~E~~~~~~l-~~h~niv~~~~~~~~~~~~~~~v~ey~~~~~L~~~i~~~~~~~~~~~  114 (337)
T cd05054          36 SCRTVAVKMLKEGATASEYKALMTELKILIHI-GHHLNVVNLLGACTKPGGPLMVIVEYCKFGNLSNYLRSKRECFSPYR  114 (337)
T ss_pred             ccceeeeeeccCCCCHHHHHHHHHHHHHHHhh-ccCcchhheeeeEecCCCCEEEEEecCCCCCHHHHHHhccccccccc
Confidence            34678999988766555555566665555443 256677777766655667889999999999999877431        


Q ss_pred             -----------------------------------------------------cccChhhhhHHHHhhhhccccccCCCC
Q 045353           93 -----------------------------------------------------VVNNESSRDNEVKNTSQGVKGHRRPSR  119 (358)
Q Consensus        93 -----------------------------------------------------~~~~~~~~~~~l~~~~~~~~~~h~~~~  119 (358)
                                                                           ..+++..+..++.+++.++.|+|+.++
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~~i  194 (337)
T cd05054         115 NKSTRKREMKQKEGKKQRLDSVSSSQSSASSGFIEDKSLSDVEEDEEGDELYKEPLTLEDLISYSFQVARGMEFLASRKC  194 (337)
T ss_pred             cccccccccccccccccccccCCccccccccccccCcchhhcccchhhhHHhhcCCCHHHHHHHHHHHHHHHHHHHhCCe
Confidence                                                                 135667788999999999999999999


Q ss_pred             CCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCc
Q 045353          120 ATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDV  189 (358)
Q Consensus       120 ~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~  189 (358)
                      +|+    +|||++.++.+||+|||++......     .....++..|+|||++.+..++.++|||||||++|+|++ |..
T Consensus       195 vHrDikp~Nill~~~~~vkL~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~SlGv~l~el~t~g~~  274 (337)
T cd05054         195 IHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPESIFDKVYTTQSDVWSFGVLLWEIFSLGAS  274 (337)
T ss_pred             ecCCCCcceEEEeCCCcEEEeccccchhcccCcchhhccCCCCCccccCcHHhcCCCCCccccHHHHHHHHHHHHHcCCC
Confidence            998    9999999999999999999764321     122345678999999999999999999999999999997 999


Q ss_pred             ccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHH
Q 045353          190 LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADF  269 (358)
Q Consensus       190 pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  269 (358)
                      ||.+...     .......+...  .                                       ....+...++.+.++
T Consensus       275 p~~~~~~-----~~~~~~~~~~~--~---------------------------------------~~~~~~~~~~~~~~l  308 (337)
T cd05054         275 PYPGVQI-----DEEFCRRLKEG--T---------------------------------------RMRAPEYATPEIYSI  308 (337)
T ss_pred             CCCCCCc-----cHHHHHHHhcc--C---------------------------------------CCCCCccCCHHHHHH
Confidence            9965321     11111111000  0                                       001122335688999


Q ss_pred             HHhccccCCCCCCCHHHHhcC
Q 045353          270 LVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       270 i~~~L~~dP~~R~ta~elL~h  290 (358)
                      +.+||+.+|++|||+.|+++|
T Consensus       309 ~~~cl~~~p~~RPs~~ell~~  329 (337)
T cd05054         309 MLDCWHNNPEDRPTFSELVEI  329 (337)
T ss_pred             HHHHccCChhhCcCHHHHHHH
Confidence            999999999999999999875

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor (VEGFR) subfamily; catalytic (c) domain. The VEGFR subfamily consists of VEGFR1 (Flt1), VEGFR2 (Flk1), VEGFR3 (Flt4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. In VEGFR3, the fifth Ig-like domain is replaced by a disulfide bridge. The binding of VEGFRs to their ligands, the VEGFs, leads to recepto

>cd06623 PKc_MAPKK_plant_like Catalytic domain of Plant dual-specificity MAP kinase kinases and similar proteins

Probab=99.96  E-value=9.5e-30  Score=226.41  Aligned_cols=228  Identities=21%  Similarity=0.244  Sum_probs=175.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..+++|.+...........+.++.+.....  .+.+++........ ....|+||||++|++|.+++.....+++..+
T Consensus        25 ~~~~~~vk~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~l~~~~~  101 (264)
T cd06623          25 TGKIYALKKIHVDGDEEFRKQLLRELKTLRSC--ESPYVVKCYGAFYK-EGEISIVLEYMDGGSLADLLKKVGKIPEPVL  101 (264)
T ss_pred             CCcEEEEEEeccCcchHHHHHHHHHHHHHHhc--CCCCeeeEEEEEcc-CCeEEEEEEecCCCcHHHHHHHcCCCCHHHH
Confidence            57788889887766555556666666655553  35555555544332 3678999999999999999987777889999


Q ss_pred             hHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCCC---CCCccCCCcchhHHHhCCCCCcch
Q 045353          101 DNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF---TNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~---~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      ..++.+++.++.++|+ .+++|+    +||+++.++.++|+|||++.......   ....++..|+|||.+.+..++.++
T Consensus       102 ~~~~~~l~~~l~~lh~~~~~~H~~l~~~ni~~~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~  181 (264)
T cd06623         102 AYIARQILKGLDYLHTKRHIIHRDIKPSNLLINSKGEVKIADFGISKVLENTLDQCNTFVGTVTYMSPERIQGESYSYAA  181 (264)
T ss_pred             HHHHHHHHHHHHHHhccCCCccCCCCHHHEEECCCCCEEEccCccceecccCCCcccceeecccccCHhhhCCCCCCchh
Confidence            9999999999999999 999998    99999999999999999997654332   234688999999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+||||+++|+|++|..||......      .....+..+.....                                   
T Consensus       182 Dv~slG~il~~l~tg~~p~~~~~~~------~~~~~~~~~~~~~~-----------------------------------  220 (264)
T cd06623         182 DIWSLGLTLLECALGKFPFLPPGQP------SFFELMQAICDGPP-----------------------------------  220 (264)
T ss_pred             hHHHHHHHHHHHHhCCCCCcccccc------CHHHHHHHHhcCCC-----------------------------------
Confidence            9999999999999999999654310      11111111111100                                   


Q ss_pred             HhhhcCChh-hHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNER-DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~-~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                         ...+.. .+..+.++|.+||..+|++|||+.++++||||+.
T Consensus       221 ---~~~~~~~~~~~l~~li~~~l~~~p~~R~~~~~ll~~~~~~~  261 (264)
T cd06623         221 ---PSLPAEEFSPEFRDFISACLQKDPKKRPSAAELLQHPFIKK  261 (264)
T ss_pred             ---CCCCcccCCHHHHHHHHHHccCChhhCCCHHHHHhCHHHHh
Confidence               011222 4678999999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase (MAPKK) subfamily, Plant MAPKKs and similar proteins, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MAPKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). Members of

>cd08226 PK_STRAD_beta Pseudokinase domain of STE20-related kinase adapter protein beta

Probab=99.96  E-value=7.2e-30  Score=234.99  Aligned_cols=265  Identities=14%  Similarity=0.083  Sum_probs=171.8

Q ss_pred             cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           19 TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      ..+|..||+|....... ....+.++++......  ..|++++........ ....|+||||+.+|+|.+++...  ..+
T Consensus        22 ~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~--l~h~niv~~~~~~~~-~~~~~~v~e~~~~~~l~~~l~~~~~~~~   98 (328)
T cd08226          22 TPTGTLVTVRITDLENCTEEHLKALQNEVVLSHF--FRHPNIMTSWTVFTT-GSWLWVISPFMAYGSANSLLKTYFPEGM   98 (328)
T ss_pred             cCCCcEEEEEEeccccCCHHHHHHHHHHHHHHHh--CCCCCcceEeeeEec-CCceEEEEecccCCCHHHHHHhhcccCC
Confidence            34788999999875433 3334556666554443  467777777666554 45689999999999999988753  347


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----------CCCCccCCCcchhH
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCPE  161 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aPE  161 (358)
                      ++..+..++.|++.++.|+|+.+++||    +|||++.++.++++|||.+......          .....++..|+|||
T Consensus        99 ~~~~~~~~~~qi~~aL~~lH~~~ivHrDlkp~Nill~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE  178 (328)
T cd08226          99 SEALIGNILFGALRGLNYLHQNGYIHRNIKASHILISGDGLVSLSGLSHLYSLVRNGQKAKVVYDFPQFSTSVLPWLSPE  178 (328)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEeCCCcEEEechHHHhhhhccCccccccccccccccCccCccChh
Confidence            788888999999999999999999999    9999999999999999865322110          11123466799999


Q ss_pred             HHhCC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCC---ChhhhhccCC
Q 045353          162 VLLGS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY---SRDFFNRHGD  236 (358)
Q Consensus       162 ~l~~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~---~~~~~~~~~~  236 (358)
                      ++.+.  .++.++||||+||++|+|++|.+||....      ...   .+...+...+...+.....   ...+......
T Consensus       179 ~~~~~~~~~~~~~DiwslG~~l~el~~g~~p~~~~~------~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (328)
T cd08226         179 LLRQDLYGYNVKSDIYSVGITACELATGRVPFQDML------RTQ---MLLQKLKGPPYSPLDITTFPCEESRMKNSQSG  249 (328)
T ss_pred             hhcCCCCCCCchhhHHHHHHHHHHHHhCCCCCCCcC------hHH---HHHHHhcCCCCCCccccccchhhhhhccchhh
Confidence            99874  47899999999999999999999996433      111   1222222111110000000   0000000000


Q ss_pred             ch-----hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          237 LR-----HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       237 ~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ..     .......................++..+.+||.+||++||++|||++|+|+||||..
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rpta~e~l~~~~~~~  313 (328)
T cd08226         250 VDSGIGESVVAAGMTQTMTSERLRTPSSKTFSPAFQNLVELCLQQDPEKRPSASSLLSHAFFKQ  313 (328)
T ss_pred             hhcccccchhccccccccccccccchhhhhhhHHHHHHHHHHccCCcccCCCHHHHhhCHHHHH
Confidence            00     000000000000000011123346788999999999999999999999999999975

Protein Kinase family, STE20-related kinase adapter protein (STRAD) beta subfamily, pseudokinase domain. The STRAD-beta subfamily is part of a larger superfamily that includes the catalytic domains of serine/threonine kinases (STKs), protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The pseudokinase domain shows similarity to protein kinases but lacks crucial residues for catalytic activity. STRAD forms a complex with the scaffolding protein MO25, and the STK, LKB1, resulting in the activation of the kinase. In the complex, LKB1 phosphorylates and activates adenosine monophosphate-activated protein kinases (AMPKs), which regulate cell energy metabolism and cell polarity. LKB1 is a tumor suppressor linked to the rare inherited disease, Peutz-Jeghers syndrome, which is characterized by a predisposition to benign polyps and hyperpig

>cd06646 STKc_MAP4K5 Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-activated protein kinase kinase kinase kinase 5

Probab=99.96  E-value=3.8e-30  Score=229.68  Aligned_cols=226  Identities=19%  Similarity=0.151  Sum_probs=164.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+...... ....++++.....+  ..|++++....... .....|+||||+++|+|.+++.....+++.+
T Consensus        32 ~~~~~~aik~~~~~~~~-~~~~~~~e~~~l~~--~~h~~ii~~~~~~~-~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~  107 (267)
T cd06646          32 HTGELAAVKIIKLEPGD-DFSLIQQEIFMVKE--CKHCNIVAYFGSYL-SREKLWICMEYCGGGSLQDIYHVTGPLSELQ  107 (267)
T ss_pred             CCCeEEEEEEEecCccc-hHHHHHHHHHHHHh--cCCCCeeeeeEEEE-eCCEEEEEEeCCCCCcHHHHHHhcCCCCHHH
Confidence            45667899988654322 22345555555444  35666665554432 3457899999999999999887666788899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC---CCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG---SKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~---~~~~  169 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|++.|+|||.+.+   ..++
T Consensus       108 ~~~~~~qi~~~l~~lH~~~i~H~dl~p~nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~  187 (267)
T cd06646         108 IAYVCRETLQGLAYLHSKGKMHRDIKGANILLTDNGDVKLADFGVAAKITATIAKRKSFIGTPYWMAPEVAAVEKNGGYN  187 (267)
T ss_pred             HHHHHHHHHHHHHHHHHCCccccCCCHHHEEECCCCCEEECcCccceeecccccccCccccCccccCHhHcccccCCCCc
Confidence            99999999999999999999998    9999999999999999999765322   234468899999999853   3478


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++|+|++|..||......      .....+.. ....+.                               
T Consensus       188 ~~~Dvws~G~il~el~~g~~p~~~~~~~------~~~~~~~~-~~~~~~-------------------------------  229 (267)
T cd06646         188 QLCDIWAVGITAIELAELQPPMFDLHPM------RALFLMSK-SNFQPP-------------------------------  229 (267)
T ss_pred             chhhHHHHHHHHHHHHhCCCCccccchh------hhheeeec-CCCCCC-------------------------------
Confidence            8999999999999999999998532210      00000000 000000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                           ........+..+.+||.+||..||++|||++++|+|+|
T Consensus       230 -----~~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~l~  267 (267)
T cd06646         230 -----KLKDKTKWSSTFHNFVKISLTKNPKKRPTAERLLTHLF  267 (267)
T ss_pred             -----CCccccccCHHHHHHHHHHhhCChhhCcCHHHHhcCCC
Confidence                 00011223568899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 5 (MAPKKKK5 or MAP4K5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K5 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activating a MAPK kinase kinase (MAPKKK or MAP3K or MKKK). Each MAPK cascade is activated

>cd06613 STKc_MAP4K3_like Catalytic domain of Mitogen-activated protein kinase kinase kinase kinase-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.1e-29  Score=225.74  Aligned_cols=225  Identities=20%  Similarity=0.181  Sum_probs=168.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      ++..+++|........ ..+.+.++.....+  ..|++++...... .....+|++|||+.|++|.+++... ..+++.+
T Consensus        27 ~~~~~~ik~~~~~~~~-~~~~~~~e~~~l~~--~~h~~i~~~~~~~-~~~~~~~l~~e~~~~~~l~~~~~~~~~~l~~~~  102 (262)
T cd06613          27 TGELVAIKVIKLEPGD-DFEIIQQEISMLKE--CRHPNIVAYFGSY-LRRDKLWIVMEYCGGGSLQDIYQVTRGPLSELQ  102 (262)
T ss_pred             CCCEEEEEEEEcCchh-hHHHHHHHHHHHHh--CCCCChhceEEEE-EeCCEEEEEEeCCCCCcHHHHHHhhccCCCHHH
Confidence            4456788877654333 44566666665555  3566666654433 3345789999999999999988765 6788999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC---CCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS---KYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~---~~~  169 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......   .....++..|+|||++.+.   .++
T Consensus       103 ~~~~~~ql~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~~  182 (262)
T cd06613         103 IAYVCRETLKGLAYLHETGKIHRDIKGANILLTEDGDVKLADFGVSAQLTATIAKRKSFIGTPYWMAPEVAAVERKGGYD  182 (262)
T ss_pred             HHHHHHHHHHHHHHHHhCCceecCCChhhEEECCCCCEEECccccchhhhhhhhccccccCCccccCchhhcccccCCcC
Confidence            99999999999999999999998    9999999999999999998664432   2345788999999999877   789


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|.+||....      .......+. ..+..+.                               
T Consensus       183 ~~~Di~slG~~l~~~~tg~~p~~~~~------~~~~~~~~~-~~~~~~~-------------------------------  224 (262)
T cd06613         183 GKCDIWALGITAIELAELQPPMFDLH------PMRALFLIS-KSNFPPP-------------------------------  224 (262)
T ss_pred             chhhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH-hccCCCc-------------------------------
Confidence            99999999999999999999996433      111111111 0000000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                           ........+..+.+||.+||..||..|||+.+++.|+|
T Consensus       225 -----~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~~~  262 (262)
T cd06613         225 -----KLKDKEKWSPVFHDFIKKCLTKDPKKRPTATKLLQHPF  262 (262)
T ss_pred             -----cccchhhhhHHHHHHHHHHcCCChhhCCCHHHHhcCCC
Confidence                 00112233667899999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase kinase 3 (MAPKKKK3 or MAP4K3)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAP4K3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily includes MAP4K3, MAP4K1, MAP4K2, MAP4K5, and related proteins. Vertebrate members contain an N-terminal catalytic domain and a C-terminal citron homology (CNH) regulatory domain, similar to MAP4K4/6. MAP4Ks are involved in some MAPK signaling pathways that are important in mediating cellular responses to extracellular signals by activ

>cd05579 STKc_MAST_like Catalytic domain of Microtubule-associated serine/threonine kinase-like proteins

Probab=99.96  E-value=3.3e-30  Score=229.24  Aligned_cols=224  Identities=21%  Similarity=0.238  Sum_probs=171.3

Q ss_pred             cCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+++|.+......  .....+.++......  ..|++++....... .....|+||||+.|++|.+++.....+.+.
T Consensus        17 ~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   93 (265)
T cd05579          17 TGDIYAIKVIKKADMIRKNQVDQVLTERDILSQ--AQSPYVVKLYYSFQ-GKKNLYLVMEYLPGGDLASLLENVGSLDED   93 (265)
T ss_pred             CCCEEEEEEecchhhhhhhHHHHHHHHHHHHHh--CCCcchhHHHHhee-cCcEEEEEEecCCCCcHHHHHHHcCCCCHH
Confidence            4778899988665432  344455555554444  34666666654433 456789999999999999998876678899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----------CCCCccCCCcchhHHH
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----------FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----------~~~~~gt~~Y~aPE~l  163 (358)
                      .+..++.|++.++.++|+.+++|+    +||+++.++.++|+|||++......           .....++..|+|||++
T Consensus        94 ~~~~i~~qi~~~L~~lH~~~i~H~di~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~  173 (265)
T cd05579          94 VARIYIAEIVLALEYLHSNGIIHRDLKPDNILIDSNGHLKLTDFGLSKVGLVRRQINLNDDEKEDKRIVGTPDYIAPEVI  173 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHcCeecCCCCHHHeEEcCCCCEEEEecccchhcccCcccccccccccccCcccCccccCHHHh
Confidence            999999999999999999999998    9999999999999999998653321           2234678899999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          164 LGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      .+..++.++|||||||++|++++|..||....      .......+..  +                             
T Consensus       174 ~~~~~~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~--~-----------------------------  216 (265)
T cd05579         174 LGQGHSKTVDWWSLGCILYEFLVGIPPFHGET------PEEIFQNILN--G-----------------------------  216 (265)
T ss_pred             cCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhc--C-----------------------------
Confidence            98889999999999999999999999996433      1221111111  0                             


Q ss_pred             cCCcchhhHHhhhcCChh--hHHHHHHHHHhccccCCCCCCCH---HHHhcCcCcCC
Q 045353          244 RFWPMNKVLVEKYDFNER--DAKDMADFLVPILDFVPEKRPTA---AQCLSHPWMSA  295 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~--~~~~~~~li~~~L~~dP~~R~ta---~elL~hpwf~~  295 (358)
                                 ....+..  .+..+.+|+.+||+.+|.+|||+   .++|+||||+.
T Consensus       217 -----------~~~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~~~~~l~~~~~~~  262 (265)
T cd05579         217 -----------KIEWPEDVEVSDEAIDLISKLLVPDPEKRLGAKSIEEIKNHPFFKG  262 (265)
T ss_pred             -----------CcCCCccccCCHHHHHHHHHHhcCCHhhcCCCccHHHHhcCccccC
Confidence                       0011111  26788999999999999999999   99999999985

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MAST kinase subfamily includes MAST kinases, MAST-like (MASTL) kinases, and fungal kinases with similarity to Saccharomyces cerevisiae Rim15 and Schizosaccharomyces pombe cek1. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. MASTL kinases carry only a catalytic domain which contains a long insert re

>KOG0664 consensus Nemo-like MAPK-related serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-30  Score=218.82  Aligned_cols=260  Identities=21%  Similarity=0.301  Sum_probs=186.3

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCC----CCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS----PDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      +.|..|+.|-+...+-.- .-|++-|+.|..--  +.|.++....+......    .++|.++|+|.. +|...+.+...
T Consensus        76 RdgrrvalkK~pnvfq~L~s~krvFre~kmLcf--FkHdNVLSaLDILQPph~dfFqEiYV~TELmQS-DLHKIIVSPQ~  152 (449)
T KOG0664|consen   76 RSGKRVALKKMPNVFQNLASCKRVFREIKMLSS--FRHDNVLSLLDILQPANPSFFQELYVLTELMQS-DLHKIIVSPQA  152 (449)
T ss_pred             CCccchhHhhcchHHHHHHHHHHHHHHHHHHHh--hccccHHHHHHhcCCCCchHHHHHHHHHHHHHh-hhhheeccCCC
Confidence            456777777666655332 33555555554433  34444444444443333    567889998864 67777878888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ++...++-++.||+.|++|+|+.+|.||    .|+|++++..+||||||+|+..+.    .++..+-|.+|+|||++.|.
T Consensus       153 Ls~DHvKVFlYQILRGLKYLHsA~ILHRDIKPGNLLVNSNCvLKICDFGLARvee~d~~~hMTqEVVTQYYRAPEiLMGa  232 (449)
T KOG0664|consen  153 LTPDHVKVFVYQILRGLKYLHTANILHRDIKPGNLLVNSNCILKICDFGLARTWDQRDRLNMTHEVVTQYYRAPELLMGA  232 (449)
T ss_pred             CCcchhhhhHHHHHhhhHHHhhcchhhccCCCccEEeccCceEEecccccccccchhhhhhhHHHHHHHHhccHHHhhcc
Confidence            8999999999999999999999999999    899999999999999999987653    35666889999999999997


Q ss_pred             C-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 K-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      . |+.++||||+|||+.|++..+..|...+      ..+++..|.+++|++.-+.......-.....-.+..       .
T Consensus       233 RhYs~AvDiWSVGCIFaELLgRrILFQAq~------PiqQL~lItdLLGTPs~EaMr~ACEGAk~H~LR~~~-------k  299 (449)
T KOG0664|consen  233 RRYTGAVDIWSVGCIFAELLQRKILFQAAG------PIEQLQMIIDLLGTPSQEAMKYACEGAKNHVLRAGL-------R  299 (449)
T ss_pred             hhhcCccceehhhHHHHHHHhhhhhhhccC------hHHHHHHHHHHhCCCcHHHHHHHhhhhHHHhhccCC-------C
Confidence            6 9999999999999999999999998665      789999999999998765432111111000000000       0


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .|....+. ...-+..-..+..+++..||.+||.+|++.++++.|+|..++
T Consensus       300 ~Ps~~vLY-tlsS~~~~~heav~~~~~~l~~d~dkris~~~A~~~~~~~e~  349 (449)
T KOG0664|consen  300 APDTQRLY-KIASPDDKNHEAVDLLQKLLHFDPDKRISVEEALQHRYLEEG  349 (449)
T ss_pred             CCCcccee-eecCCcccchHHHHHHHHHhCCCCcccccHhhhccccccccc
Confidence            00000000 011112234567789999999999999999999999999764

>cd06624 STKc_ASK Catalytic domain of the Protein Serine/Threonine Kinase, Apoptosis signal-regulating kinase

Probab=99.96  E-value=1.9e-29  Score=225.44  Aligned_cols=225  Identities=18%  Similarity=0.183  Sum_probs=165.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-ccc--C
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVN--N   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~--~   96 (358)
                      .++..+++|.+...... ..+.+.++.+....  ..+.+++....... .....++||||+.|++|.+++... ...  .
T Consensus        31 ~~~~~v~~k~~~~~~~~-~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  106 (268)
T cd06624          31 STQVRIAIKEIPERDSR-YVQPLHEEIALHSY--LKHRNIVQYLGSDS-ENGFFKIFMEQVPGGSLSALLRSKWGPLKDN  106 (268)
T ss_pred             CCCcEEEEEEecCCCHH-HHHHHHHHHHHHHh--cCCCCeeeeeeeec-cCCEEEEEEecCCCCCHHHHHHHhcccCCCc
Confidence            35667888877655433 34566677666555  35666666554433 346789999999999999988753 233  6


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCC-
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +..+..++.+++.++.++|..+++|+    +||+++. ++.+||+|||++.....   ......|++.|+|||++.+.. 
T Consensus       107 ~~~~~~~~~qi~~al~~lH~~~i~h~dl~p~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  186 (268)
T cd06624         107 EQTIIFYTKQILEGLKYLHDNQIVHRDIKGDNVLVNTYSGVVKISDFGTSKRLAGINPCTETFTGTLQYMAPEVIDKGPR  186 (268)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEcCCCCeEEEecchhheecccCCCccccCCCCccccChhhhccccc
Confidence            77888899999999999999999999    9999976 67999999999865432   123346889999999997654 


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++||||+||++|+|++|.+||......     ...... .....                                
T Consensus       187 ~~~~~~Dv~slGvvl~~l~~g~~p~~~~~~~-----~~~~~~-~~~~~--------------------------------  228 (268)
T cd06624         187 GYGAPADIWSLGCTIVEMATGKPPFIELGEP-----QAAMFK-VGMFK--------------------------------  228 (268)
T ss_pred             cCCchhhhHHHHHHHHHHHhCCCCCccccCh-----hhhHhh-hhhhc--------------------------------
Confidence             789999999999999999999999532210     000000 00000                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                             ....++...+.++.+|+.+||+.+|.+|||+.|++.||||
T Consensus       229 -------~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~ll~~~~~  268 (268)
T cd06624         229 -------IHPEIPESLSAEAKNFILRCFEPDPDKRASAHDLLQDPFL  268 (268)
T ss_pred             -------cCCCCCcccCHHHHHHHHHHcCCCchhCCCHHHHHhCCCC
Confidence                   0112334456789999999999999999999999999997

Serine/threonine kinases (STKs), Apoptosis signal-regulating kinase (ASK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The ASK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Subfamily members are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks) and include ASK1, ASK2, and MAPKKK15. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. ASK1 (also called MAPKKK5) functions in the c-Jun N-terminal kina

>cd05578 STKc_Yank1 Catalytic domain of the Protein Serine/Threonine Kinase, Yank1

Probab=99.96  E-value=8.3e-30  Score=226.37  Aligned_cols=226  Identities=16%  Similarity=0.163  Sum_probs=173.8

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ++|..+++|.+......  ...+++.++.+...+  ..|++++....... .....|+||||+.|++|.+++.....+.+
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~l~~   99 (258)
T cd05578          23 DTKKMFAMKYMNKQKCVEKGSVRNVLNERRILQE--LNHPFLVNLWYSFQ-DEENMYLVVDLLLGGDLRYHLSQKVKFSE   99 (258)
T ss_pred             cCCcEEEEEEEehhhhcchhHHHHHHHHHHHHHh--CCCCChHHHHHhhc-CCCeEEEEEeCCCCCCHHHHHHhcCCcCH
Confidence            45778899988754322  234556666655555  35666666554443 34578999999999999999987777888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .++..++.++++++.++|+.+++|+    +||++++++.++|+|||++......  .....|+..|+|||++.+..++.+
T Consensus       100 ~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  179 (258)
T cd05578         100 EQVKFWICEIVLALEYLHSKGIIHRDIKPDNILLDEQGHVHITDFNIATKVTPDTLTTSTSGTPGYMAPEVLCRQGYSVA  179 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEEcCCCCEEEeecccccccCCCccccccCCChhhcCHHHHcccCCCCc
Confidence            9999999999999999999999999    9999999999999999998665432  334578889999999998889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|+||+||++|+|++|..||......    ....+.   .....                                    
T Consensus       180 ~Di~slG~~l~~l~~g~~p~~~~~~~----~~~~~~---~~~~~------------------------------------  216 (258)
T cd05578         180 VDWWSLGVTAYECLRGKRPYRGHSRT----IRDQIR---AKQET------------------------------------  216 (258)
T ss_pred             ccchhhHHHHHHHHhCCCCCCCCCcc----HHHHHH---HHhcc------------------------------------
Confidence            99999999999999999999754421    011111   11000                                    


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCH--HHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTA--AQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta--~elL~hpwf  293 (358)
                        .....+...+..+.++|.+||..||.+||++  +|+++||||
T Consensus       217 --~~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~~l~~~~~~  258 (258)
T cd05578         217 --ADVLYPATWSTEAIDAINKLLERDPQKRLGDNLKDLKNHPYF  258 (258)
T ss_pred             --ccccCcccCcHHHHHHHHHHccCChhHcCCccHHHHhcCCCC
Confidence              0112233446789999999999999999999  999999998

Serine/Threonine Kinases (STKs), Yank1 or STK32A subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Yank1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. This subfamily contains uncharacterized STKs with similarity to the human protein designated Yank1 or STK32A.

>cd07852 STKc_MAPK15 Catalytic domain of the Serine/Threonine Kinase, Mitogen-Activated Protein Kinase 15

Probab=99.96  E-value=2.5e-29  Score=232.27  Aligned_cols=254  Identities=21%  Similarity=0.293  Sum_probs=179.5

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+++|.+..... ......+.++.....+. ..|.+++......... ...+|+||||+.+ +|..++... .+.+.
T Consensus        31 ~~~~~~vK~~~~~~~~~~~~~~~~~E~~~l~~l-~~h~ni~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~-~~~~~  107 (337)
T cd07852          31 TKEVVALKKIFDAFRNATDAQRTFREIMFLQEL-GDHPNIVKLLNVIKAENDKDIYLVFEYMET-DLHAVIRAN-ILEDV  107 (337)
T ss_pred             CCeEEEEEeeccccCcchhhhhhhHHHHHHHHh-cCCCCccceeeeeccCCCceEEEEeccccc-CHHHHHhcC-CCCHH
Confidence            567788898765432 23334455555555443 2677777776654333 3467999999985 888877665 67788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------CCCCccCCCcchhHHHhCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ....++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......        .....||..|+|||++.+.
T Consensus       108 ~~~~i~~qi~~~L~~LH~~~i~H~dl~p~nill~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  187 (337)
T cd07852         108 HKRYIMYQLLKALKYIHSGNVIHRDLKPSNILLNSDCRVKLADFGLARSLSELEENPENPVLTDYVATRWYRAPEILLGS  187 (337)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCcEEEeeccchhccccccccccCcchhcccccccccCceeeecc
Confidence            888899999999999999999999    9999999999999999999654321        2234689999999988764


Q ss_pred             -CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC--CChhhhhccCCchhhhhc
Q 045353          167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR--YSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       167 -~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~--~~~~~~~~~~~~~~~~~~  243 (358)
                       .++.++|||||||++|+|++|++||.+..      .......+....+.++...+....  ....++.....      .
T Consensus       188 ~~~~~~sDi~slG~~l~el~tg~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  255 (337)
T cd07852         188 TRYTKGVDMWSVGCILGEMLLGKPLFPGTS------TLNQLEKIIEVIGPPSAEDIESIKSPFAATMLDSLPS------R  255 (337)
T ss_pred             ccccccchHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHHHhhhHHHhhhhccc------c
Confidence             47899999999999999999999997554      456666777776665543221100  00000000000      0


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ..   ..    .....+..+..+.+||.+||+.||++|||+.++++||||+.-
T Consensus       256 ~~---~~----~~~~~~~~~~~l~~li~~~l~~~P~~Rps~~~il~~~~~~~~  301 (337)
T cd07852         256 PR---KP----LDELLPKASDDALDLLKKLLVFNPNKRLTAEEALEHPYVAQF  301 (337)
T ss_pred             cc---cc----hhhhccCCCHHHHHHHHHhccCCcccccCHHHHhhChhhhhh
Confidence            00   00    001112256789999999999999999999999999999764

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 15 (MAPK15) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK15 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. Human MAPK15 is also called Extracellular signal Regulated Kinase 8 (ERK8) while the rat protein is called ERK7. ERK7 and ERK8 display both similar and different biochemical properties. They autophosphorylate and activate themselves and do not require upstream activating kinases. ERK7 is constitutively active and is not affected by extracellular stimul

>cd08218 STKc_Nek1 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 1

Probab=99.96  E-value=1.6e-29  Score=224.21  Aligned_cols=224  Identities=17%  Similarity=0.253  Sum_probs=169.0

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .+|..+++|.+... ......+.+.++.+...+  +.+.+++...... ......|+||||+.|++|.+++...  ...+
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~   99 (256)
T cd08218          23 EDGKQYVIKEINISKMSPKEREESRKEVAVLSN--MKHPNIVQYQESF-EENGNLYIVMDYCEGGDLYKKINAQRGVLFP   99 (256)
T ss_pred             CCCCEEEEEEEEhHhCChHHHHHHHHHHHHHHh--CCCCCeeeeEeee-cCCCeEEEEEecCCCCcHHHHHHhccCCCCC
Confidence            35667888877643 334445566666665555  3456666554443 3456889999999999999988643  2467


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++......   .....|++.|+|||++.+..++
T Consensus       100 ~~~~~~~~~~l~~~l~~lh~~~i~h~~l~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~  179 (256)
T cd08218         100 EDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTIKLGDFGIARVLNSTVELARTCIGTPYYLSPEICENRPYN  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEEeeccceeecCcchhhhhhccCCccccCHHHhCCCCCC
Confidence            78889999999999999999999998    9999999999999999999765432   2234688899999999988899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+|||||++++|++|..||....      ..+....+.  .+..+                                
T Consensus       180 ~~~Dv~slG~i~~~l~~g~~~~~~~~------~~~~~~~~~--~~~~~--------------------------------  219 (256)
T cd08218         180 NKSDIWALGCVLYEMCTLKHAFEAGN------MKNLVLKII--RGSYP--------------------------------  219 (256)
T ss_pred             CccchhHHHHHHHHHHcCCCCccCCC------HHHHHHHHh--cCCCC--------------------------------
Confidence            99999999999999999999996332      122211111  11110                                


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                             ..+...+..+.++|.+||+.+|.+||++.++++||||
T Consensus       220 -------~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~vl~~~~~  256 (256)
T cd08218         220 -------PVSSHYSYDLRNLVSQLFKRNPRDRPSVNSILEKNFI  256 (256)
T ss_pred             -------CCcccCCHHHHHHHHHHhhCChhhCcCHHHHhhCcCC
Confidence                   1223346788999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 1 (Nek1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek1 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek1 is associated with centrosomes throughout the cell cycle. It is involved in the formation of primary cilium and in the maintenance of centrosomes. It cycles through the nucleus and may be capable of relaying signals between the cilium and the nucleus. Nek1 is implicated in the development of polycysti

>cd05104 PTKc_Kit Catalytic domain of the Protein Tyrosine Kinase, Kit

Probab=99.96  E-value=2.4e-29  Score=235.55  Aligned_cols=223  Identities=15%  Similarity=0.136  Sum_probs=165.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      .++..||+|++...........+.++.+...++ ..|++++.+...... ....|+|||||+||+|.+++....      
T Consensus        63 ~~~~~vavK~l~~~~~~~~~~~~~~Ei~il~~l-~~HpnIv~l~~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~  140 (375)
T cd05104          63 DAAMTVAVKMLKPSAHLTEREALMSELKVLSYL-GNHINIVNLLGACTV-GGPTLVITEYCCYGDLLNFLRRKRDSFICP  140 (375)
T ss_pred             ccceeEEEEeccCCcCcHHHHHHHHHHHHHHHh-cCCcceeeeeeeecc-CCcceeeehhccCCcHHHHHHhcccccccc
Confidence            345578999998766666666777777666654 267788887765543 456899999999999988775321      


Q ss_pred             ---------------------------------------------------------------------ccChhhhhHHH
Q 045353           94 ---------------------------------------------------------------------VNNESSRDNEV  104 (358)
Q Consensus        94 ---------------------------------------------------------------------~~~~~~~~~~l  104 (358)
                                                                                           .+++..+..++
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  220 (375)
T cd05104         141 KHEDHAEAALYKNLLHQREMSCDSLNEYMDMKPGVSYVVPTKADKRRSVRSGSYIDQDVTSEILEEDELALDTEDLLSFS  220 (375)
T ss_pred             cccchhhhHHHHhhhhhhcccchhhhhhhhcCCCcccccccccccccccccceecccccHHHHHhccCCCCCHHHHHHHH
Confidence                                                                                 24566778899


Q ss_pred             HhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCcchhhh
Q 045353          105 KNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYSTSADLW  175 (358)
Q Consensus       105 ~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~~~Diw  175 (358)
                      .+++.++.|+|+.+++|+    +|||++.++.+||+|||++.......     ....++..|+|||++.+..++.++|||
T Consensus       221 ~qi~~~l~~lH~~~ivH~Dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDi~  300 (375)
T cd05104         221 YQVAKGMSFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIRNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVW  300 (375)
T ss_pred             HHHHHHHHHHHHCCeeccCCchhhEEEECCCcEEEecCccceeccCcccccccCCCCCCcceeChhHhcCCCCCCCCCHH
Confidence            999999999999999998    99999999999999999997654321     122345679999999998999999999


Q ss_pred             hhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          176 SFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       176 SlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      ||||++|+|++ |..||.....     +......+....                                         
T Consensus       301 slG~~l~ellt~g~~p~~~~~~-----~~~~~~~~~~~~-----------------------------------------  334 (375)
T cd05104         301 SYGILLWEIFSLGSSPYPGMPV-----DSKFYKMIKEGY-----------------------------------------  334 (375)
T ss_pred             HHHHHHHHHHhcCCCCCCCCCc-----hHHHHHHHHhCc-----------------------------------------
Confidence            99999999997 8889864321     111111110000                                         


Q ss_pred             hhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          255 KYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                      ....+...+.++.+||.+||+.||++|||+.|+++.
T Consensus       335 ~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~eil~~  370 (375)
T cd05104         335 RMLSPECAPSEMYDIMKSCWDADPLKRPTFKQIVQL  370 (375)
T ss_pred             cCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence            001122235688999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Kit (or c-Kit); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Kit is a member of the Platelet Derived Growth Factor Receptor (PDGFR) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of Kit to its ligand, the stem-cell factor (SCF), leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. Kit is important in the development of melanocytes, germ cells, mast cells, hematopoietic stem ce

>cd07838 STKc_CDK4_6_like Catalytic domain of Cyclin-Dependent protein Kinase 4 and 6-like Serine/Threonine Kinases

Probab=99.96  E-value=4.3e-29  Score=225.06  Aligned_cols=250  Identities=22%  Similarity=0.224  Sum_probs=172.8

Q ss_pred             cCcccccccccCccchh-hhHHhhHHHHHhhhhc-cCCCccccccCCCCC----CCCCCCcccccCCCCCcccccccc--
Q 045353           21 SSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGC-AGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDS--   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~--   92 (358)
                      +|..+++|.+......+ ....+.++.....+.. ..+++++........    .....|++|||+.+ +|.+++...  
T Consensus        23 ~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~l~~e~~~~-~l~~~l~~~~~  101 (287)
T cd07838          23 TGRFVALKKVRVPLSEEGIPLSTLREIALLKQLESFEHPNIVRLLDVCHGPRTDRELKLTLVFEHVDQ-DLATYLSKCPK  101 (287)
T ss_pred             CCCEEEEEEeccccccchhhhhHHHHHHHHHHhhccCCCCcceEEEEEeeccCCCCceeEEEehhccc-CHHHHHHHccC
Confidence            47788999987654433 2333444443333221 234555554443322    22358999999986 787776543  


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ..+++.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......  .....++..|+|||++.+.
T Consensus       102 ~~l~~~~~~~~~~~i~~al~~LH~~~i~h~~l~~~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~PE~~~~~  181 (287)
T cd07838         102 PGLPPETIKDLMRQLLRGVDFLHSHRIVHRDLKPQNILVTSDGQVKIADFGLARIYSFEMALTSVVVTLWYRAPEVLLQS  181 (287)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCeeeccCChhhEEEccCCCEEEeccCcceeccCCcccccccccccccChHHhccC
Confidence            247888999999999999999999999998    9999999999999999999765432  2344678899999999998


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCC-ChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY-SRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  245 (358)
                      .++.++||||+||++|+|++|.+||.+.+      ..+.+..+.+..+......+..... ....+...           
T Consensus       182 ~~~~~~Di~s~G~~l~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  244 (287)
T cd07838         182 SYATPVDMWSVGCIFAELFRRRPLFRGTS------EADQLDKIFDVIGLPSEEEWPRNVSLPRSSFPSY-----------  244 (287)
T ss_pred             CCCCcchhhhHHHHHHHHHhCCCcccCCC------hHHHHHHHHHHcCCCChHhcCCCcccchhhcccc-----------
Confidence            89999999999999999999999997654      4556666666555433221111000 00000000           


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           .........+..+..+.+||.+||+.||.+|||+.++++||||
T Consensus       245 -----~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~il~~~~~  287 (287)
T cd07838         245 -----TPRSFKSFVPEICEEGLDLLKKMLTFNPHKRISAFEALQHPYF  287 (287)
T ss_pred             -----cccchhhhhhhhhHHHHHHHHHHhccCCccCCCHHHHhcCcCC
Confidence                 0000011123446788999999999999999999999999998

Serine/Threonine Kinases (STKs), Cyclin-dependent protein kinase 4 (CDK4) and CDK6-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The CDK4/6-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. CDKs belong to a large family of STKs that are regulated by their cognate cyclins. Together, they are involved in the control of cell-cycle progression, transcription, and neuronal function. CDK4 and CDK6 partner with D-type cyclins to regulate the early G1 phase of the cell cycle. They are the first kinase activated by mitogenic signals to release cells from the G0 arrested state. CDK4 and CDK6 are both

>cd05064 PTKc_EphR_A10 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A10

Probab=99.96  E-value=1.6e-29  Score=225.74  Aligned_cols=220  Identities=13%  Similarity=0.159  Sum_probs=169.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      ..+..+|+|.+....+......+.++.....+  ..|++++....... .....|+||||++||+|.+++.. ...+++.
T Consensus        31 ~~~~~vaik~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~  107 (266)
T cd05064          31 KRELPVAIHTLRAGCSDKQRRGFLAEALTLGQ--FDHSNIVRLEGVIT-RGNTMMIVTEYMSNGALDSFLRKHEGQLVAG  107 (266)
T ss_pred             CceeeEEEEecCCCCCHHHHHHHHHHHHHHhc--CCCCCcCeEEEEEe-cCCCcEEEEEeCCCCcHHHHHHhCCCCCCHH
Confidence            45678999999887776666667777766665  36777777765543 35678999999999999998875 3467888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--C--CCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--F--TNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~--~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.+++.|+.++|+.+++|+    +|||++.++.+||+|||.+......  .  ....++..|+|||++.+..++.
T Consensus       108 ~~~~~~~~i~~al~~lH~~~iiH~dikp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  187 (266)
T cd05064         108 QLMGMLPGLASGMKYLSEMGYVHKGLAAHKVLVNSDLVCKISGFRRLQEDKSEAIYTTMSGKSPVLWAAPEAIQYHHFSS  187 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeeccccHhhEEEcCCCcEEECCCcccccccccchhcccCCCCceeecCHHHHhhCCccc
Confidence            999999999999999999999999    9999999999999999987543221  1  1224567899999999989999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|++++ |..||...+      ..+.+..+.+..                                    
T Consensus       188 ~~Di~slG~~l~ell~~g~~p~~~~~------~~~~~~~~~~~~------------------------------------  225 (266)
T cd05064         188 ASDVWSFGIVMWEVMSYGERPYWDMS------GQDVIKAVEDGF------------------------------------  225 (266)
T ss_pred             hhHHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHCCC------------------------------------
Confidence            9999999999999775 999996543      222222221110                                    


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+..++..+.+++.+||+.+|.+|||++++++
T Consensus       226 -----~~~~~~~~~~~~~~li~~c~~~~p~~RP~~~~i~~  260 (266)
T cd05064         226 -----RLPAPRNCPNLLHQLMLDCWQKERGERPRFSQIHS  260 (266)
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCCCchhCCCHHHHHH
Confidence                 01122334677899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA10 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchor

>cd08220 STKc_Nek8 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 8

Probab=99.96  E-value=3.4e-29  Score=221.96  Aligned_cols=224  Identities=17%  Similarity=0.236  Sum_probs=168.8

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .++..+++|..... ++......++++.+...+.  .+++++...... ......++||||++|++|.+++...  ..+.
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~~--~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~   99 (256)
T cd08220          23 ADQKLVIIKQIPVEQMTKDERLAAQNECQVLKLL--SHPNIIEYYENF-LEDKALMIVMEYAPGGTLAEYIQKRCNSLLD   99 (256)
T ss_pred             CCCcEEEEEEEeccccccHHHHHHHHHHHHHhhC--CCCchhheeeeE-ecCCEEEEEEecCCCCCHHHHHHHhcccCCC
Confidence            35667788877543 4555566777776665553  456666555433 3456789999999999999988753  3467


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..+..++.+++.++.++|+.+++|+    +||+++.+ +.+||+|||.+......  .....|+..|+|||.+.+..++
T Consensus       100 ~~~~~~~~~~i~~~l~~lh~~~i~h~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  179 (256)
T cd08220         100 EDTILHFFVQILLALHHVHTKLILHRDLKTQNILLDKHKMVVKIGDFGISKILSSKSKAYTVVGTPCYISPELCEGKPYN  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEccCCCceecCCCccccccccCCcccCchhccCCCCC
Confidence            88889999999999999999999999    99999865 46799999999765433  2335788999999999988889


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||.+.+      .......+..  +.                                  
T Consensus       180 ~~~Dv~slG~~l~~l~~~~~~~~~~~------~~~~~~~~~~--~~----------------------------------  217 (256)
T cd08220         180 QKSDIWALGCVLYELASLKRAFEAAN------LPALVLKIMS--GT----------------------------------  217 (256)
T ss_pred             cccchHHHHHHHHHHHhCCCCcccCc------hHHHHHHHHh--cC----------------------------------
Confidence            99999999999999999999996433      1111111110  00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           ....+...+..+.+++.+||..||++|||+.|+++||||
T Consensus       218 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~ll~~p~~  256 (256)
T cd08220         218 -----FAPISDRYSPDLRQLILSMLNLDPSKRPQLSQIMAQPIC  256 (256)
T ss_pred             -----CCCCCCCcCHHHHHHHHHHccCChhhCCCHHHHhhCCCC
Confidence                 001223346788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 8 (Nek8) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek8 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek8 contains an N-terminal kinase catalytic domain and a C-terminal RCC1 (regulator of chromosome condensation) domain. A double point mutation in Nek8 causes cystic kidney disease in mice that genetically resembles human autosomal recessive polycystic kidney disease (ARPKD). Nek8 is also associated with

>cd06616 PKc_MKK4 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 4

Probab=99.96  E-value=2.6e-29  Score=226.88  Aligned_cols=231  Identities=17%  Similarity=0.186  Sum_probs=167.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccc---c--cccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQ---N--DSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~---~--~~~~   94 (358)
                      .+|..+|+|.+..........++.++....... ..+++++........ ....|++|||+.+ ++.++.   .  ....
T Consensus        27 ~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~~-~~~~~iv~~~~~~~~-~~~~~~~~e~~~~-~l~~l~~~~~~~~~~~  103 (288)
T cd06616          27 PSGTIMAVKRIRSTVDEKEQKRLLMDLDVVMRS-SDCPYIVKFYGALFR-EGDCWICMELMDI-SLDKFYKYVYEVLKSV  103 (288)
T ss_pred             CCCCEEEEEEehhccChHHHHHHHHHHHHHHHh-cCCCCEeeeeeEEec-CCcEEEEEecccC-CHHHHHHHHHHhhcCC
Confidence            456788999887665555566666666655543 246677776665443 5678899999875 433322   1  2345


Q ss_pred             cChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC-
Q 045353           95 NNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS-  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~-  166 (358)
                      +.+..+..++.+++.++.|+|+ .+++|+    +|||++.++.+||+|||++......  .....|+..|+|||++.+. 
T Consensus       104 l~~~~~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  183 (288)
T cd06616         104 IPEEILGKIAVATVKALNYLKEELKIIHRDVKPSNILLDRNGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA  183 (288)
T ss_pred             CCHHHHHHHHHHHHHHHHHHhhcCCeeccCCCHHHEEEccCCcEEEeecchhHHhccCCccccccCccCccCHHHhcccc
Confidence            7788899999999999999987 589988    9999999999999999999654322  2344789999999999876 


Q ss_pred             --CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          167 --KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       167 --~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                        .++.++||||+||++|+|++|..||....        .....+.+.....+...                        
T Consensus       184 ~~~~~~~~Di~slG~il~el~~g~~p~~~~~--------~~~~~~~~~~~~~~~~~------------------------  231 (288)
T cd06616         184 RDGYDVRSDVWSLGITLYEVATGKFPYPKWN--------SVFDQLTQVVKGDPPIL------------------------  231 (288)
T ss_pred             ccCCcchhhhhHHHHHHHHHHhCCCCchhcc--------hHHHHHhhhcCCCCCcC------------------------
Confidence              58999999999999999999999996432        11122222221111000                        


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                ....+...+..+.+||.+||+.||++|||+++++.||||..
T Consensus       232 ----------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~i~~~~~~~~  272 (288)
T cd06616         232 ----------SNSEEREFSPSFVNFINLCLIKDESKRPKYKELLEHPFIKD  272 (288)
T ss_pred             ----------CCcCCCccCHHHHHHHHHHccCChhhCcCHHHHhcChhhhc
Confidence                      00111234678999999999999999999999999999975

Protein kinases (PKs), MAP kinase kinase 4 (MKK4) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising of the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK4 is a dual-specificity PK that phosphorylates and activates

>cd06617 PKc_MKK3_6 Catalytic domain of the dual-specificity Protein Kinases, MAP kinase kinases 3 and 6

Probab=99.96  E-value=2.6e-29  Score=226.15  Aligned_cols=229  Identities=18%  Similarity=0.219  Sum_probs=166.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc----ccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN----DSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~----~~~~~   95 (358)
                      .+|..+|+|.+..........++.++.....+. .++++++....... .+...|+||||++ |+|.+++.    ....+
T Consensus        24 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~iv~~~~~~~-~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~~  100 (283)
T cd06617          24 PTGTIMAVKRIRATVNSQEQKRLLMDLDISMRS-VDCPYTVTFYGALF-REGDVWICMEVMD-TSLDKFYKKVYDKGLTI  100 (283)
T ss_pred             CCCcEEEEEEEecCCCcHHHHHHHHHHHHHHHH-cCCCCeeeeeEEEe-cCCcEEEEhhhhc-ccHHHHHHHhccCCCCC
Confidence            357889999988766544444555554443333 46667766555443 3457899999998 56655543    33457


Q ss_pred             ChhhhhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhC---
Q 045353           96 NESSRDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLG---  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~---  165 (358)
                      ++..+..++.+++.++.++|+. +++|+    +|||++.++.+||+|||++......  .+...|+..|+|||++.+   
T Consensus       101 ~~~~~~~~~~qi~~~l~~lH~~~~i~h~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  180 (283)
T cd06617         101 PEDILGKIAVSIVKALEYLHSKLSVIHRDVKPSNVLINRNGQVKLCDFGISGYLVDSVAKTIDAGCKPYMAPERINPELN  180 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccCCccccChhhcCCccc
Confidence            8889999999999999999997 89988    9999999999999999999765432  233578899999999875   


Q ss_pred             -CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 -SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 -~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                       ..++.++|+||+||++|+|++|+.||.....     ....+.....  +..+.                          
T Consensus       181 ~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~~~~~--~~~~~--------------------------  227 (283)
T cd06617         181 QKGYDVKSDVWSLGITMIELATGRFPYDSWKT-----PFQQLKQVVE--EPSPQ--------------------------  227 (283)
T ss_pred             ccccCccccchhhHHHHHHHHhCCCCCCcccc-----CHHHHHHHHh--cCCCC--------------------------
Confidence             3478899999999999999999999953221     1122211110  00000                          


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                  ......+.++.+||.+||..+|.+|||+.++++||||...
T Consensus       228 ------------~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  267 (283)
T cd06617         228 ------------LPAEKFSPEFQDFVNKCLKKNYKERPNYPELLQHPFFELH  267 (283)
T ss_pred             ------------CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCchhhhc
Confidence                        0011236788999999999999999999999999999864

Protein kinases (PKs), MAP kinase kinase 3 (MKK3) and MKK6 subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK3 and MKK6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK3 and MKK6 are dual-specificity PKs

>cd05581 STKc_PDK1 Catalytic domain of the Protein Serine/Threonine Kinase, Phosphoinositide-dependent kinase 1

Probab=99.96  E-value=2.1e-29  Score=226.10  Aligned_cols=224  Identities=18%  Similarity=0.223  Sum_probs=172.7

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+++|+.....  .......+.++.+...+.. .+++++....... .....++||||+.|++|.+++.....+.+
T Consensus        24 ~~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~~~~l~-~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~l~~  101 (280)
T cd05581          24 ETNKEYAIKILDKRQLIKEKKVKYVKIEKEVLTRLN-GHPGIIKLYYTFQ-DEENLYFVLEYAPNGELLQYIRKYGSLDE  101 (280)
T ss_pred             CCCCEEEEEEechHhccchHHHHHHHHHHHHHHhcc-cCCCchhHHHHhc-CCceEEEEEcCCCCCcHHHHHHHcCCCCH
Confidence            367788999887633  2333445555555554432 3666665554433 34578999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----------------------CC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----------------------TN  150 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----------------------~~  150 (358)
                      ..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.......                       ..
T Consensus       102 ~~~~~i~~ql~~~l~~Lh~~~~~H~dl~~~ni~i~~~~~~~l~df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (280)
T cd05581         102 KCTRFYAAEILLALEYLHSKGIIHRDLKPENILLDKDMHIKITDFGTAKVLDPNSSPESNKGDATNIDSQIEKNRRRFAS  181 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecCCCHHHeEECCCCCEEecCCccccccCCccccccCCCCCcccccccccccccccc
Confidence            9999999999999999999999988    99999999999999999986543221                       12


Q ss_pred             CccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh
Q 045353          151 DIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF  230 (358)
Q Consensus       151 ~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  230 (358)
                      ..|+..|+|||++.+..++.++|||||||+++++++|+.||...+      .......+..                   
T Consensus       182 ~~~~~~~~~Pe~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~-------------------  236 (280)
T cd05581         182 FVGTAEYVSPELLNEKPAGKSSDLWALGCIIYQMLTGKPPFRGSN------EYLTFQKILK-------------------  236 (280)
T ss_pred             ccCCccccCHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHh-------------------
Confidence            357889999999998889999999999999999999999997443      1111111111                   


Q ss_pred             hhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCc
Q 045353          231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWM  293 (358)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf  293 (358)
                                             ....++...++.+.+||.+||+.||.+|||+    .++++||||
T Consensus       237 -----------------------~~~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~~~~~ll~~~~~  280 (280)
T cd05581         237 -----------------------LEYSFPPNFPPDAKDLIEKLLVLDPQDRLGVNEGYDELKAHPFF  280 (280)
T ss_pred             -----------------------cCCCCCCccCHHHHHHHHHHhcCCHhhCCCcccCHHHHhcCCCC
Confidence                                   1222334446788999999999999999999    999999998

Serine/Threonine Kinases (STKs), Phosphoinositide-dependent kinase 1 (PDK1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PDK1 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). PDK1 carries an N-terminal catalytic domain and a C-terminal pleckstrin homology (PH) domain that binds phosphoinositides. It phosphorylates the activation loop of AGC kinases that are regulated by PI3K such as PKB, SGK, and PKC, among others, and is crucial for their activation. Thus, it contributes in regulating many processes including metabolism, growth, proliferation, and survival. PDK1 also has the ability to auto

>cd06626 STKc_MEKK4 Catalytic domain of the Protein Serine/Threonine Kinase, MAP/ERK kinase kinase 4

Probab=99.96  E-value=6.1e-29  Score=221.31  Aligned_cols=227  Identities=21%  Similarity=0.238  Sum_probs=169.2

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+++|.+...-.. ...+.+.++.......  .+.+++...... ......++|+||+.|++|.+++.....+.+.
T Consensus        23 ~~~~~~~ik~~~~~~~~~~~~~~~~~e~~~~~~l--~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~   99 (264)
T cd06626          23 DTGELMAVKEIRIQDNDPKTIKEIADEMKVLELL--KHPNLVKYYGVE-VHREKVYIFMEYCSGGTLEELLEHGRILDEH   99 (264)
T ss_pred             CCCcEEEEEEEECcccchHHHHHHHHHHHHHHhC--CCCChhheeeeE-ecCCEEEEEEecCCCCcHHHHHhhcCCCChH
Confidence            35677888887654332 3555666666555553  455555554433 2346789999999999999999877778888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......       .....++..|+|||++.+..
T Consensus       100 ~~~~i~~~i~~~l~~lh~~~i~H~dl~~~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~  179 (264)
T cd06626         100 VIRVYTLQLLEGLAYLHSHGIVHRDIKPANIFLDHNGVIKLGDFGCAVKLKNNTTTMGEEVQSLAGTPAYMAPEVITGGK  179 (264)
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEcccccccccCCCCCcccccccCCcCCcCccChhhccCCC
Confidence            999999999999999999999999    8999999999999999998765322       11346788999999998766


Q ss_pred             ---CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          168 ---YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       168 ---~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                         ++.++||||+||++|++++|+.||.....     .......+..  +..+.                          
T Consensus       180 ~~~~~~~~Dv~s~G~il~~l~~g~~pf~~~~~-----~~~~~~~~~~--~~~~~--------------------------  226 (264)
T cd06626         180 GKGHGRAADIWSLGCVVLEMATGKRPWSELDN-----EFQIMFHVGA--GHKPP--------------------------  226 (264)
T ss_pred             CCCCCcccchHHHHHHHHHHHhCCCCccCCcc-----hHHHHHHHhc--CCCCC--------------------------
Confidence               88999999999999999999999964321     1111111110  11100                          


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                 .+.....+..+.+||.+||+.||.+|||+.+++.|||+
T Consensus       227 -----------~~~~~~~~~~~~~li~~~l~~~p~~R~~~~~i~~~~~~  264 (264)
T cd06626         227 -----------IPDSLQLSPEGKDFLDRCLESDPKKRPTASELLQHPFV  264 (264)
T ss_pred             -----------CCcccccCHHHHHHHHHHccCCcccCCCHHHHhcCCCC
Confidence                       00111236678899999999999999999999999996

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 4 (MEKK4) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK4 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MEKK4 is a mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MKKK or MAP3K), that phosphorylates and activates MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MEKK4 activates the c-Jun N-terminal kinase (JNK) and p38 MAPK signaling pathways by directly activating their respective MAPKKs, MKK4

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.96  E-value=6.9e-30  Score=231.45  Aligned_cols=222  Identities=19%  Similarity=0.198  Sum_probs=176.5

Q ss_pred             cccccccCccchhhh--HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhH
Q 045353           25 KENKSLYGDLTKNQK--KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDN  102 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~  102 (358)
                      -|.|++.....=+.|  ..+.-++....+ | ..+.||+++..... +...|++||-|-||+|...+...+.+++...+.
T Consensus       448 fAlKilkK~hIVdtkQqeHv~sEr~Im~~-~-~s~fIvrLYrTfrd-~kyvYmLmEaClGGElWTiLrdRg~Fdd~tarF  524 (732)
T KOG0614|consen  448 FALKILKKKHIVDTKQQEHVFSERNIMME-C-RSDFIVRLYRTFRD-SKYVYMLMEACLGGELWTILRDRGSFDDYTARF  524 (732)
T ss_pred             HHHHHHhHhhccchhHHHHHHhHHHHHHh-c-CchHHHHHHHHhcc-chhhhhhHHhhcCchhhhhhhhcCCcccchhhh
Confidence            366666553332222  223333333333 3 46788888776543 457899999999999999999999999999999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCCcchhhhh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYSTSADLWS  176 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwS  176 (358)
                      ++..++++..|+|..+||-|    +|+|++.+|.+||.|||+|+....  ...+.||||.|.|||+++..+.+.++|.||
T Consensus       525 ~~acv~EAfeYLH~k~iIYRDLKPENllLd~~Gy~KLVDFGFAKki~~g~KTwTFcGTpEYVAPEIILnKGHD~avDyWa  604 (732)
T KOG0614|consen  525 YVACVLEAFEYLHRKGIIYRDLKPENLLLDNRGYLKLVDFGFAKKIGSGRKTWTFCGTPEYVAPEIILNKGHDRAVDYWA  604 (732)
T ss_pred             hHHHHHHHHHHHHhcCceeccCChhheeeccCCceEEeehhhHHHhccCCceeeecCCcccccchhhhccCcchhhHHHH
Confidence            99999999999999999965    999999999999999999987653  455679999999999999999999999999


Q ss_pred             hhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhh
Q 045353          177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY  256 (358)
Q Consensus       177 lGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (358)
                      ||+++|||++|.+||.+.+      ....-..|.+-                                        ...+
T Consensus       605 LGIli~ELL~G~pPFs~~d------pmktYn~ILkG----------------------------------------id~i  638 (732)
T KOG0614|consen  605 LGILIYELLTGSPPFSGVD------PMKTYNLILKG----------------------------------------IDKI  638 (732)
T ss_pred             HHHHHHHHHcCCCCCCCCc------hHHHHHHHHhh----------------------------------------hhhh
Confidence            9999999999999998655      22222222111                                        1234


Q ss_pred             cCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCC
Q 045353          257 DFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSA  295 (358)
Q Consensus       257 ~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~  295 (358)
                      .+|..++..+.+||+++...+|.+|..     +.++-+|.||.+
T Consensus       639 ~~Pr~I~k~a~~Lik~LCr~~P~ERLG~~~~gI~DIkkH~Wf~g  682 (732)
T KOG0614|consen  639 EFPRRITKTATDLIKKLCRDNPTERLGYQKGGINDIKKHRWFEG  682 (732)
T ss_pred             hcccccchhHHHHHHHHHhcCcHhhhccccCChHHHHhhhhhhc
Confidence            567777889999999999999999986     899999999986

>cd05123 STKc_AGC Catalytic domain of AGC family Protein Serine/Threonine Kinases

Probab=99.96  E-value=1.7e-29  Score=223.12  Aligned_cols=222  Identities=18%  Similarity=0.201  Sum_probs=173.4

Q ss_pred             cCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+++|.+.......  ....+..+.+...+.  .++++........ .....|+||||+.+++|.+++.....+++.
T Consensus        17 ~~~~~~~k~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~l~~~~~l~~~   93 (250)
T cd05123          17 TGKLYAMKVLKKKKIIKRKEVEHTLTERNILSRI--NHPFIVKLHYAFQ-TEEKLYLVLEYAPGGELFSHLSKEGRFSEE   93 (250)
T ss_pred             CCcEEEEEEeehhhhcchHHHHHHHHHHHHHHHc--CCCcHHHHHHHee-cCCeeEEEEecCCCCcHHHHHHhcCCCCHH
Confidence            57788888877654432  445666666555543  4666666554433 456789999999999999999877778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||.+.+..++.+
T Consensus        94 ~~~~~~~qi~~~l~~lh~~~~~H~~l~p~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~  173 (250)
T cd05123          94 RARFYAAEIVLALEYLHSLGIIYRDLKPENILLDADGHIKLTDFGLAKELSSEGSRTNTFCGTPEYLAPEVLLGKGYGKA  173 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHCCceecCCCcceEEEcCCCcEEEeecCcceecccCCCcccCCcCCccccChHHhCCCCCCch
Confidence            999999999999999999999988    9999999999999999999765432   345578899999999998888999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|+||||+++|++++|..||....      .......+..                                        
T Consensus       174 ~D~~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~~----------------------------------------  207 (250)
T cd05123         174 VDWWSLGVLLYEMLTGKPPFYAED------RKEIYEKILK----------------------------------------  207 (250)
T ss_pred             hhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHhc----------------------------------------
Confidence            999999999999999999996433      1111111111                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCH---HHHhcCcCc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTA---AQCLSHPWM  293 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta---~elL~hpwf  293 (358)
                        ....++...+..+.++|.+||..||++|||+   +++++||||
T Consensus       208 --~~~~~~~~~~~~l~~~i~~~l~~~p~~R~~~~~~~~l~~~~~f  250 (250)
T cd05123         208 --DPLRFPEFLSPEARDLISGLLQKDPTKRLGSGGAEEIKAHPFF  250 (250)
T ss_pred             --CCCCCCCCCCHHHHHHHHHHhcCCHhhCCCcccHHHHHhCCCC
Confidence              1123344446788999999999999999999   999999998

Serine/Threonine Kinases (STKs), AGC (Protein Kinases A, G and C) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The AGC family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and Phosphoinositide 3-Kinase (PI3K). Members of this family include cAMP-dependent Protein Kinase (PKA), cGMP-dependent Protein Kinase (PKG), Protein Kinase C (PKC), Protein Kinase B (PKB), G protein-coupled Receptor Kinase (GRK), Serum- and Glucocorticoid-induced Kinase (SGK), and 70 kDa ribosomal Protein S6 Kinase (p70S6K or S6K), among others. AGC kinases share an activation mechanism based on the phosphorylation of up to three sites: the activation loop (A-loop), the hydrophobic motif (HM) and the

>PLN03225 Serine/threonine-protein kinase SNT7; Provisional

Probab=99.96  E-value=1.6e-28  Score=239.62  Aligned_cols=202  Identities=13%  Similarity=0.140  Sum_probs=137.2

Q ss_pred             CCCCCCCcccccCCCCCcccccccccc--------------------cChhhhhHHHHhhhhccccccCCCCCCc----c
Q 045353           68 PSSPDNFSVDTIPNGVSVEERQNDSVV--------------------NNESSRDNEVKNTSQGVKGHRRPSRATR----K  123 (358)
Q Consensus        68 ~~~~~~~iv~e~~~gg~L~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~  123 (358)
                      ......|+||||+.+++|.+++.....                    .....+..++.|++.++.|+|+.+++||    +
T Consensus       205 ~~~~~~~LV~ey~~~gsL~~~l~~~~~~~~v~~~l~~~~~~l~~~~~r~~~~i~~i~~qll~aL~yLH~~gIiHRDLKP~  284 (566)
T PLN03225        205 KKEDEYWLVWRYEGESTLADLMQSKEFPYNVEPYLLGKVQDLPKGLERENKIIQTIMRQILFALDGLHSTGIVHRDVKPQ  284 (566)
T ss_pred             ccCCceEEEEEecCCCcHHHHHHhcCCchhHHHHhccchhhccccchhhHHHHHHHHHHHHHHHHHHHHCCEEeCcCCHH
Confidence            345678999999999999988764321                    1123466789999999999999999999    9


Q ss_pred             cccccC-CCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC----------------------CCcchhhhh
Q 045353          124 NLLAAV-DVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK----------------------YSTSADLWS  176 (358)
Q Consensus       124 NILl~~-~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~----------------------~~~~~DiwS  176 (358)
                      |||++. ++.+||+|||+|+.....    ....++|+.|+|||.+....                      ++.++||||
T Consensus       285 NILl~~~~~~~KL~DFGlA~~l~~~~~~~~~~~~~t~~Y~APE~~~~~~~~~~~~~~~~~~~~sp~l~~~~~~~k~DVwS  364 (566)
T PLN03225        285 NIIFSEGSGSFKIIDLGAAADLRVGINYIPKEFLLDPRYAAPEQYIMSTQTPSAPSAPVATALSPVLWQLNLPDRFDIYS  364 (566)
T ss_pred             HEEEeCCCCcEEEEeCCCccccccccccCCcccccCCCccChHHhhccCCCCCCccccccccccchhccccCCCCcccHH
Confidence            999986 589999999999754322    34568899999999775432                      344569999


Q ss_pred             hhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhh
Q 045353          177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY  256 (358)
Q Consensus       177 lGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (358)
                      +||++|+|+++..++..        +...+..+....+.....+......                 .   ........+
T Consensus       365 lGviL~el~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~-----------------~---~~~~~~~~~  416 (566)
T PLN03225        365 AGLIFLQMAFPNLRSDS--------NLIQFNRQLKRNDYDLVAWRKLVEP-----------------R---ASPDLRRGF  416 (566)
T ss_pred             HHHHHHHHHhCcCCCch--------HHHHHHHHHHhcCCcHHHHHHhhcc-----------------c---cchhhhhhh
Confidence            99999999987655421        2223333333333221111100000                 0   000000111


Q ss_pred             cCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          257 DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       257 ~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      .........+.+||.+||++||++|||++|+|+||||+...
T Consensus       417 ~~~d~~~~~~~dLi~~mL~~dP~kR~ta~e~L~Hpff~~~~  457 (566)
T PLN03225        417 EVLDLDGGAGWELLKSMMRFKGRQRISAKAALAHPYFDREG  457 (566)
T ss_pred             hhccccchHHHHHHHHHccCCcccCCCHHHHhCCcCcCCCC
Confidence            12222345667999999999999999999999999998753

>cd07854 STKc_MAPK4_6 Catalytic domain of the Serine/Threonine Kinases, Mitogen-Activated Protein Kinases 4 and 6

Probab=99.96  E-value=1.1e-28  Score=228.56  Aligned_cols=254  Identities=21%  Similarity=0.274  Sum_probs=166.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-------------CCCCCcccccCCCCCcc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-------------SPDNFSVDTIPNGVSVE   86 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~iv~e~~~gg~L~   86 (358)
                      .+|..+++|.+...-. ...+.+.++.+....  +.+++++.........             ....|+||||+.+ +|.
T Consensus        28 ~~~~~v~iK~i~~~~~-~~~~~~~~Ei~~l~~--l~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~  103 (342)
T cd07854          28 DCDKRVAVKKIVLTDP-QSVKHALREIKIIRR--LDHDNIVKVYEVLGPSGSDLTEDVGSLTELNSVYIVQEYMET-DLA  103 (342)
T ss_pred             CCCcEEEEEEEecCCC-chHHHHHHHHHHHHh--cCCCcchhhHhhhcccccccccccccccccceEEEEeecccc-cHH
Confidence            4677888887755433 333445555555544  3566666555433222             2357899999984 887


Q ss_pred             cccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCCC------CCCCccCC
Q 045353           87 ERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHKQ------FTNDIQTR  155 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~~------~~~~~gt~  155 (358)
                      +++.. ..+.+..+..++.|++.|+.++|+.+++|+    +||+++. ++.+||+|||++......      .....|+.
T Consensus       104 ~~~~~-~~l~~~~~~~~~~qi~~aL~~LH~~givH~dikp~Nili~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~  182 (342)
T cd07854         104 NVLEQ-GPLSEEHARLFMYQLLRGLKYIHSANVLHRDLKPANVFINTEDLVLKIGDFGLARIVDPHYSHKGYLSEGLVTK  182 (342)
T ss_pred             HHHHc-CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCceEEECCcccceecCCccccccccccccccc
Confidence            77653 347788999999999999999999999998    9999974 567899999999764322      12346788


Q ss_pred             CcchhHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          156 QYRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       156 ~Y~aPE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      .|+|||++.+ ..++.++|||||||++|+|++|+.||.+..      .......+.............      .+....
T Consensus       183 ~y~aPE~~~~~~~~~~~~DiwSlGvil~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~------~~~~~~  250 (342)
T cd07854         183 WYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKPLFAGAH------ELEQMQLILESVPVVREEDRN------ELLNVI  250 (342)
T ss_pred             cccCHHHHhCccccCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChHHhh------hhhhhh
Confidence            9999998876 458899999999999999999999997544      222222222222221111100      000000


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...  ... ..+.....   ........+.++.+||.+||+.||.+|||+.++|+||||+.-
T Consensus       251 ~~~--~~~-~~~~~~~~---~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~ell~h~~~~~~  306 (342)
T cd07854         251 PSF--VRN-DGGEPRRP---LRDLLPGVNPEALDFLEQILTFNPMDRLTAEEALMHPYMSCY  306 (342)
T ss_pred             hhh--hhh-cccccCCC---HHHHccCCCHHHHHHHHHHhCCCchhccCHHHHhCCCccccc
Confidence            000  000 00000000   001122356788999999999999999999999999999853

Serine/Threonine Kinases (STKs), Mitogen-Activated Protein Kinase 4 (MAPK4) and MAPK6 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPK4/6 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKs are important mediators of cellular responses to extracellular signals. MAPK4 is also called ERK4 or p63MAPK, while MAPK6 is also called ERK3 or p97MAPK. MAPK4 and MAPK6 are atypical MAPKs that are not regulated by MAP2Ks. MAPK6 is expressed ubiquitously with highest amounts in brain and skeletal muscle. It may be involved in the control of cell differentiation by negatively regulating cell cycle progressi

>cd06641 STKc_MST3 Catalytic domain of the Protein Serine/Threonine Kinase, Mammalian Ste20-like protein kinase 3

Probab=99.96  E-value=4.8e-29  Score=223.95  Aligned_cols=225  Identities=18%  Similarity=0.216  Sum_probs=172.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .++..+|+|.....-.....+.+.++.+...+  ..+++++....... .+...|+||||+.||+|.+++... .+++..
T Consensus        27 ~~~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~l~~~i~~~-~~~~~~  102 (277)
T cd06641          27 RTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQ--CDSPYVTKYYGSYL-KDTKLWIIMEYLGGGSALDLLEPG-PLDETQ  102 (277)
T ss_pred             CCCcEEEEEEeccccchHHHHHHHHHHHHHHh--cCCCCEeEEEEEEE-eCCeEEEEEEeCCCCcHHHHHhcC-CCCHHH
Confidence            45678899987655555555677777776665  35666665554433 345789999999999999988653 467888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||.+.+..++.++
T Consensus       103 ~~~~~~~l~~~l~~lh~~~i~h~dl~p~Ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~  182 (277)
T cd06641         103 IATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKA  182 (277)
T ss_pred             HHHHHHHHHHHHHHHccCCeecCCCCHHhEEECCCCCEEEeecccceecccchhhhccccCCccccChhhhccCCCCchh
Confidence            99999999999999999999988    9999999999999999998665432   2234688899999999888889999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+||+||++|+|++|..||....      .......+.   ...                                    
T Consensus       183 Dv~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~---~~~------------------------------------  217 (277)
T cd06641         183 DIWSLGITAIELAKGEPPHSELH------PMKVLFLIP---KNN------------------------------------  217 (277)
T ss_pred             hHHHHHHHHHHHHcCCCCCCccc------hHHHHHHHh---cCC------------------------------------
Confidence            99999999999999999996432      111111110   000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                        ....+...+..+.+++.+||+.+|.+||++.++++||||..
T Consensus       218 --~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~l~~~~~~~  258 (277)
T cd06641         218 --PPTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFIVR  258 (277)
T ss_pred             --CCCCCcccCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhh
Confidence              00112234677889999999999999999999999999986

Serine/threonine kinases (STKs), mammalian Ste20-like protein kinase 3 (MST3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MST3 subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MST3 phosphorylates the STK NDR and may play a role in cell cycle progression and cell morphology. It may also regulate paxillin and consequently, cell migration. MST3 is present in human placenta, where it plays an essential role in the oxidative stress-induced apoptosis of trophoblasts in normal spontaneous delivery. Dysregulation of trophoblast apoptosis may result in pregnancy complications such as preeclampsia and int

>cd05062 PTKc_IGF-1R Catalytic domain of the Protein Tyrosine Kinase, Insulin-like Growth Factor-1 Receptor

Probab=99.96  E-value=5e-29  Score=223.80  Aligned_cols=220  Identities=15%  Similarity=0.189  Sum_probs=162.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      .+..+|+|......+...+..+.++......  ..+++++...... ......++||||+.+|+|.+++....       
T Consensus        35 ~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~--l~~~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  111 (277)
T cd05062          35 PETRVAIKTVNEAASMRERIEFLNEASVMKE--FNCHHVVRLLGVV-SQGQPTLVIMELMTRGDLKSYLRSLRPEMENNP  111 (277)
T ss_pred             ceeEEEEEeccccCCHHHHHHHHHHHHHHHh--CCCCCeeeEEEEE-cCCCCeEEEEecCCCCCHHHHHHHcCccccccc
Confidence            3456889988665444555566666655544  4567777665543 33457899999999999999876421       


Q ss_pred             ---ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhH
Q 045353           94 ---VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPE  161 (358)
Q Consensus        94 ---~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE  161 (358)
                         ..+..++..++.+++.++.|+|+.+++|+    +|||+++++.+||+|||++.......     ....++..|+|||
T Consensus       112 ~~~~~~~~~~~~~~~~l~~~l~~lH~~~~vH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05062         112 VQAPPSLKKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE  191 (277)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHCCcccCCcchheEEEcCCCCEEECCCCCccccCCcceeecCCCCccCHhhcChh
Confidence               23556778889999999999999999998    99999999999999999986543221     1235577899999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||.+..      ....+..+..  +..                        
T Consensus       192 ~~~~~~~~~~~Di~slG~~l~el~~~~~~p~~~~~------~~~~~~~~~~--~~~------------------------  239 (277)
T cd05062         192 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGMS------NEQVLRFVME--GGL------------------------  239 (277)
T ss_pred             HhhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CCc------------------------
Confidence            9998889999999999999999998 788886433      1222211110  000                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                     ...+...+..+.+++.+||+.||++|||+.|++++
T Consensus       240 ---------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  274 (277)
T cd05062         240 ---------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISS  274 (277)
T ss_pred             ---------------CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                           01122345678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Insulin-like Growth Factor-1 Receptor (IGF-1R); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. IGF-1R is a receptor tyr kinases (RTK) that is composed of two alphabeta heterodimers. Binding of the ligand (IGF-1 or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, which stimulates downstream kinase activities and biological function. IGF-1R signaling is important in the differentiation, growth, and survival of normal cells. In cancer cells, wh

>KOG0194 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.96  E-value=1.9e-29  Score=234.58  Aligned_cols=216  Identities=19%  Similarity=0.182  Sum_probs=175.5

Q ss_pred             cccccccC--ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhhh
Q 045353           25 KENKSLYG--DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSRD  101 (358)
Q Consensus        25 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~~  101 (358)
                      ||+|...+  .+++.+++.+-++|+...+  +.|.++|..+..... ..-+|||||+|+||+|.+++.... ..+..+..
T Consensus       189 VAvK~~k~~~~~~~~~~~e~m~EArvMr~--l~H~NVVr~yGVa~~-~~Pl~ivmEl~~gGsL~~~L~k~~~~v~~~ek~  265 (474)
T KOG0194|consen  189 VAVKTTKGSSELTKEQIKEFMKEARVMRQ--LNHPNVVRFYGVAVL-EEPLMLVMELCNGGSLDDYLKKNKKSLPTLEKL  265 (474)
T ss_pred             eEEEeecccccccHHHHHHHHHHHHHHHh--CCCCCEEEEEEEEcC-CCccEEEEEecCCCcHHHHHHhCCCCCCHHHHH
Confidence            89999996  6888899999999998888  689999999886544 456899999999999999999766 58888999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC---CCccCCCcchhHHHhCCCCCcchhh
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT---NDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~---~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      .++.+++.|+.|+|..++|||    +|+|++.++.+||+|||+|+.......   ..--...|+|||.+....|+.++||
T Consensus       266 ~~~~~AA~Gl~YLh~k~~IHRDIAARNcL~~~~~~vKISDFGLs~~~~~~~~~~~~~klPirWLAPEtl~~~~~s~kTDV  345 (474)
T KOG0194|consen  266 RFCYDAARGLEYLHSKNCIHRDIAARNCLYSKKGVVKISDFGLSRAGSQYVMKKFLKKLPIRWLAPETLNTGIFSFKTDV  345 (474)
T ss_pred             HHHHHHHhHHHHHHHCCCcchhHhHHHheecCCCeEEeCccccccCCcceeeccccccCcceecChhhhccCccccccch
Confidence            999999999999999999999    899999999999999999976542111   1123568999999999899999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++||+++ |..||.+..      ..+....+..-.-                                       
T Consensus       346 ~sfGV~~~Eif~~g~~Py~g~~------~~~v~~kI~~~~~---------------------------------------  380 (474)
T KOG0194|consen  346 WSFGVLLWEIFENGAEPYPGMK------NYEVKAKIVKNGY---------------------------------------  380 (474)
T ss_pred             hheeeeEEeeeccCCCCCCCCC------HHHHHHHHHhcCc---------------------------------------
Confidence            999999999998 888998665      2233323211000                                       


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       ....+...+..+..++.+|+..||++|||+.++.+
T Consensus       381 -r~~~~~~~p~~~~~~~~~c~~~~p~~R~tm~~i~~  415 (474)
T KOG0194|consen  381 -RMPIPSKTPKELAKVMKQCWKKDPEDRPTMSTIKK  415 (474)
T ss_pred             -cCCCCCCCHHHHHHHHHHhccCChhhccCHHHHHH
Confidence             11233445778889999999999999999998854

>cd05061 PTKc_InsR Catalytic domain of the Protein Tyrosine Kinase, Insulin Receptor

Probab=99.96  E-value=8.5e-29  Score=223.66  Aligned_cols=227  Identities=16%  Similarity=0.204  Sum_probs=165.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      +.+..+|+|.+..........++.++......  ..+++++....... .....|+||||+.||+|.+++....      
T Consensus        34 ~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~  110 (288)
T cd05061          34 EAETRVAVKTVNESASLRERIEFLNEASVMKG--FTCHHVVRLLGVVS-KGQPTLVVMELMAHGDLKSYLRSLRPEAENN  110 (288)
T ss_pred             CcceEEEEEECCCcCCHHHHHHHHHHHHHHHh--CCCCCeeeEEEEEc-CCCCcEEEEeCCCCCCHHHHHHHhccccccC
Confidence            34567889987765544455555555544443  35566666655433 3357899999999999999886321      


Q ss_pred             ----ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           94 ----VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        94 ----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                          ......+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||+++.....     .....++..|+||
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~l~~lH~~~i~H~dikp~nili~~~~~~~L~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~p  190 (288)
T cd05061         111 PGRPPPTLQEMIQMAAEIADGMAYLNAKKFVHRDLAARNCMVAHDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAP  190 (288)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCCChheEEEcCCCcEEECcCCccccccccccccccCCCcccccccCH
Confidence                12345678899999999999999999998    9999999999999999998754321     1223456789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |.+.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  +.                        
T Consensus       191 E~~~~~~~~~~~DvwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~--~~------------------------  238 (288)
T cd05061         191 ESLKDGVFTTSSDMWSFGVVLWEITSLAEQPYQGLS------NEQVLKFVMD--GG------------------------  238 (288)
T ss_pred             HHhccCCCChHhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC------------------------
Confidence            99998889999999999999999998 788886432      1222211110  00                        


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc------CcCcCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS------HPWMSAG  296 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~------hpwf~~~  296 (358)
                                     ....+...+..+.+++.+||+.||++|||+.++++      ||||.+-
T Consensus       239 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~~~~~~  286 (288)
T cd05061         239 ---------------YLDQPDNCPERVTDLMRMCWQFNPKMRPTFLEIVNLLKDDLHPSFPEV  286 (288)
T ss_pred             ---------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHhhcCCCCCCC
Confidence                           00112233578999999999999999999999986      9999863

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR is a receptor tyr kinase (RTK) that is composed of two alphabeta heterodimers. Binding of the insulin ligand to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological function. InsR signaling plays an important role in many cellular processes including glucose homeostasis, glycogen synthesis, lipid and protein meta

>cd05122 PKc_STE Catalytic domain of STE family Protein Kinases

Probab=99.96  E-value=8.6e-29  Score=218.23  Aligned_cols=223  Identities=23%  Similarity=0.275  Sum_probs=169.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      +|..+++|.+..... ...+.+.++.....+.  .+.++........ .+...|+++||++|++|.+++... ..+.+..
T Consensus        24 ~~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~   99 (253)
T cd05122          24 TGKEVAIKVIKLESK-EKKEKIINEIQILKKC--KHPNIVKYYGSYL-KKDELWIVMEFCSGGSLKDLLKSTNQTLTESQ   99 (253)
T ss_pred             CCcEEEEEEecccch-hHHHHHHHHHHHHHhC--CCCCEeEEEEEEe-cCCeEEEEEecCCCCcHHHHHhhcCCCCCHHH
Confidence            567788888877665 4455666666655553  3454444444322 236789999999999999988765 5678889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.++|+|||.+......  .....++..|+|||.+.+..++.++|
T Consensus       100 ~~~i~~~i~~~l~~lh~~~i~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~~~~D  179 (253)
T cd05122         100 IAYVCKELLKGLEYLHSNGIIHRDIKAANILLTSDGEVKLIDFGLSAQLSDTKARNTMVGTPYWMAPEVINGKPYDYKAD  179 (253)
T ss_pred             HHHHHHHHHHHHHHhhcCCEecCCCCHHHEEEccCCeEEEeeccccccccccccccceecCCcccCHHHHcCCCCCcccc
Confidence            99999999999999999999988    8999999999999999999766543  24567899999999999888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      +|||||++++|++|..||...+      ....+..+..  ...+                                    
T Consensus       180 v~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~------------------------------------  215 (253)
T cd05122         180 IWSLGITAIELAEGKPPYSELP------PMKALFKIAT--NGPP------------------------------------  215 (253)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCc------hHHHHHHHHh--cCCC------------------------------------
Confidence            9999999999999999996432      1111111111  0000                                    


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                       ........+..+.++|.+||+.||++|||+.++++|||
T Consensus       216 -~~~~~~~~~~~~~~~i~~~l~~~p~~R~t~~~~l~~~~  253 (253)
T cd05122         216 -GLRNPEKWSDEFKDFLKKCLQKNPEKRPTAEQLLKHPF  253 (253)
T ss_pred             -CcCcccccCHHHHHHHHHHccCChhhCCCHHHHhcCCC
Confidence             00011112567899999999999999999999999999

Protein Kinases (PKs), STE family, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The STE family is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases (STKs), protein tyrosine kinases (PTKs), RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). This family is composed of STKs, and some dual-specificity PKs that phosphorylate both threonine and tyrosine residues of target proteins. Most members are kinases involved in mitogen-activated protein kinase (MAPK) signaling cascades, acting as MAPK kinases (MAPKKs), MAPK kinase kinases (MAPKKKs), or MAPK kinase kinase kinases (MAP4Ks). The MAPK signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core

>cd05115 PTKc_Zap-70 Catalytic domain of the Protein Tyrosine Kinase, Zeta-chain-associated protein of 70kDa

Probab=99.96  E-value=6.5e-29  Score=220.74  Aligned_cols=218  Identities=16%  Similarity=0.165  Sum_probs=167.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      .+..+|+|.+...........+.+++....+.  .|++++.......  ....|+||||++||+|.+++.. ...+++..
T Consensus        21 ~~~~vavk~~~~~~~~~~~~~~~~E~~~l~~l--~h~~ii~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~   96 (257)
T cd05115          21 KQIDVAIKVLKNENEKSVRDEMMREAEIMHQL--DNPYIVRMIGVCE--AEALMLVMEMASGGPLNKFLSGKKDEITVSN   96 (257)
T ss_pred             CceeEEEEEcccccChHHHHHHHHHHHHHHhc--CCCCeEEEEEEEc--CCCeEEEEEeCCCCCHHHHHHhCCCCCCHHH
Confidence            45568999998877666667788887777663  5676666655433  3468999999999999998864 44678899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....++..|+|||++.+..++
T Consensus        97 ~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  176 (257)
T cd05115          97 VVELMHQVSMGMKYLEGKNFVHRDLAARNVLLVNQHYAKISDFGLSKALGADDSYYKARSAGKWPLKWYAPECINFRKFS  176 (257)
T ss_pred             HHHHHHHHHHHHHHHHhcCeeecccchheEEEcCCCcEEeccCCccccccCCccceeccCCCCCCcccCCHHHHccCCCC
Confidence            99999999999999999999998    9999999999999999999654322      1112335789999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|++++ |..||....      .......+..  +.                                 
T Consensus       177 ~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~---------------------------------  215 (257)
T cd05115         177 SRSDVWSYGITMWEAFSYGQKPYKKMK------GPEVMSFIEQ--GK---------------------------------  215 (257)
T ss_pred             chhhHHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHHC--CC---------------------------------
Confidence            99999999999999996 999996433      1121111110  00                                 


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+.++.++|.+||..||++||++.++++
T Consensus       216 ------~~~~~~~~~~~l~~li~~c~~~~~~~Rp~~~~i~~  250 (257)
T cd05115         216 ------RLDCPAECPPEMYALMKDCWIYKWEDRPNFAKVEE  250 (257)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                  11223445678999999999999999999999865

Protein Tyrosine Kinase (PTK) family; Zeta-chain-associated protein of 70kDa (Zap-70); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Zap-70 is a member of the Syk subfamily of kinases, which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Zap-70 is primarily expressed in T-cells and NK cells, and is a crucial component in T-cell receptor (TCR) signaling. Zap-70 binds the phosphorylated ITAM (immunoreceptor tyr activation motif) sequences of the activated TCR zeta-chain through its SH2 domains, leading to its pho

>cd05040 PTKc_Ack_like Catalytic domain of the Protein Tyrosine Kinase, Activated Cdc42-associated kinase

Probab=99.96  E-value=1e-28  Score=219.17  Aligned_cols=216  Identities=19%  Similarity=0.151  Sum_probs=167.9

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccChhhhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~~~~~  101 (358)
                      .+|+|.+.........+++.++.+...+.  .|.+++........  ...++||||+++|+|.+++....  .+.+..+.
T Consensus        25 ~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~  100 (257)
T cd05040          25 PVAVKCLKSDKLSDIMDDFLKEAAIMHSL--DHENLIRLYGVVLT--HPLMMVTELAPLGSLLDRLRKDALGHFLISTLC  100 (257)
T ss_pred             EEEEeecCCcccHHHHHHHHHHHHHHhhc--CCCCccceeEEEcC--CeEEEEEEecCCCcHHHHHHhcccccCcHHHHH
Confidence            68999999888776677777777766664  56666666555444  77899999999999999887543  57788999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCCcc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....++..|+|||.+.+..++.+
T Consensus       101 ~~~~qi~~~L~~lH~~~i~H~di~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~  180 (257)
T cd05040         101 DYAVQIANGMRYLESKRFIHRDLAARNILLASDDKVKIGDFGLMRALPQNEDHYVMEEHLKVPFAWCAPESLRTRTFSHA  180 (257)
T ss_pred             HHHHHHHHHHHHHHhCCccccccCcccEEEecCCEEEeccccccccccccccceecccCCCCCceecCHHHhcccCcCch
Confidence            999999999999999999998    9999999999999999999765431      112356788999999998889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||...+      ..+....+... +.                                   
T Consensus       181 ~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~~~-~~-----------------------------------  218 (257)
T cd05040         181 SDVWMFGVTLWEMFTYGEEPWAGLS------GSQILKKIDKE-GE-----------------------------------  218 (257)
T ss_pred             hhhHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc-CC-----------------------------------
Confidence            999999999999998 999996432      22222222110 00                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                          ....+...+..+.+++.+||..+|++|||+.++++
T Consensus       219 ----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  253 (257)
T cd05040         219 ----RLERPEACPQDIYNVMLQCWAHNPADRPTFAALRE  253 (257)
T ss_pred             ----cCCCCccCCHHHHHHHHHHCCCCcccCCCHHHHHH
Confidence                00112233567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Activated Cdc42-associated kinase (Ack) subfamily; catalytic (c) domain. Ack subfamily members include Ack1, thirty-eight-negative kinase 1 (Tnk1), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ack subfamily members are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal catalytic domain, an SH3 domain, a Cdc42-binding CRIB domain, and a proline-rich region. They are mainly expressed in brain and skeletal tissues and are involved in the regulation of cell adhesion and growth, receptor degradation, and axonal guidance. Ack1 is also associated with and

>cd05082 PTKc_Csk Catalytic domain of the Protein Tyrosine Kinase, C-terminal Src kinase

Probab=99.96  E-value=5.4e-29  Score=220.93  Aligned_cols=218  Identities=16%  Similarity=0.127  Sum_probs=163.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~   97 (358)
                      ..|..+++|....+.   ..+.+.++.....+.  .+.+++.............|+||||+++|+|.+++....  ...+
T Consensus        27 ~~~~~~~~k~~~~~~---~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  101 (256)
T cd05082          27 YRGNKVAVKCIKNDA---TAQAFLAEASVMTQL--RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG  101 (256)
T ss_pred             EcCCcEEEEEeCCCc---hHHHHHHHHHHHHhC--CCCCeeeEEEEEEcCCCceEEEEECCCCCcHHHHHHhcCCCCCCH
Confidence            456778888876432   344566666665553  556666655443334566899999999999999876433  4677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.++|+.+++|+    +||++++++.+||+|||++...........++..|+|||++.+..++.++|
T Consensus       102 ~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  181 (256)
T cd05082         102 DCLLKFSLDVCEAMEYLEANNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSD  181 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeccccchheEEEcCCCcEEecCCccceeccccCCCCccceeecCHHHHccCCCCchhh
Confidence            8888999999999999999999998    999999999999999999976654444455677899999999888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|+|++ |..||....      .......+..   ..                                    
T Consensus       182 v~slG~i~~~l~~~g~~p~~~~~------~~~~~~~~~~---~~------------------------------------  216 (256)
T cd05082         182 VWSFGILLWEIYSFGRVPYPRIP------LKDVVPRVEK---GY------------------------------------  216 (256)
T ss_pred             hHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc---CC------------------------------------
Confidence            9999999999997 999986432      1111111110   00                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        ....+...++.+.+++.+||..||++|||+.++++
T Consensus       217 --~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  251 (256)
T cd05082         217 --KMDAPDGCPPVVYDVMKQCWHLDAATRPSFLQLRE  251 (256)
T ss_pred             --CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence              00122344678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, re

>cd06657 STKc_PAK4 Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase 4

Probab=99.96  E-value=7.9e-29  Score=224.37  Aligned_cols=228  Identities=17%  Similarity=0.211  Sum_probs=168.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+++|.+.... ......+.++......  ..+.+++....... .....|+||||++|++|.+++.. ..+.+..
T Consensus        43 ~~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~  117 (292)
T cd06657          43 SSGKLVAVKKMDLRK-QQRRELLFNEVVIMRD--YQHENVVEMYNSYL-VGDELWVVMEFLEGGALTDIVTH-TRMNEEQ  117 (292)
T ss_pred             CCCeEEEEEEecccc-hhHHHHHHHHHHHHHh--cCCcchhheeeEEE-eCCEEEEEEecCCCCcHHHHHhc-CCCCHHH
Confidence            456778888764332 2334455566554444  35566665554433 34578999999999999987754 3467888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....|++.|+|||.+.+..++.++
T Consensus       118 ~~~~~~ql~~~l~~lH~~givH~dl~p~Nilv~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~  197 (292)
T cd06657         118 IAAVCLAVLKALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPEV  197 (292)
T ss_pred             HHHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCCEEEcccccceecccccccccccccCccccCHHHhcCCCCCchh
Confidence            89999999999999999999988    9999999999999999998654322   2234688999999999888889999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+||+||++|+|++|..||.+..      ....+..+...   .+.                                  
T Consensus       198 Dv~slGvil~el~tg~~p~~~~~------~~~~~~~~~~~---~~~----------------------------------  234 (292)
T cd06657         198 DIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRDN---LPP----------------------------------  234 (292)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhh---CCc----------------------------------
Confidence            99999999999999999996433      12222211110   000                                  


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        ........+..+.+++.+||+.||.+|||+.++++||||....
T Consensus       235 --~~~~~~~~~~~l~~li~~~l~~~P~~R~~~~~ll~~~~~~~~~  277 (292)
T cd06657         235 --KLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  277 (292)
T ss_pred             --ccCCcccCCHHHHHHHHHHHhCCcccCcCHHHHhcChHHhccC
Confidence              0001122356788999999999999999999999999998754

Serine/threonine kinases (STKs), p21-activated kinase (PAK) 4, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs from higher eukaryotes are classified into two groups (I and II), according to their biochemical and structural features. PAK4 belongs to group II. Group II PAKs contain a PBD (p21-binding domain) and a C-terminal catalytic domain, but do not harbor an AID (autoinhibitory domain) or SH3 binding sites. PAK4 regulates cell mo

>cd05084 PTKc_Fes Catalytic domain of the Protein Tyrosine Kinase, Fes

Probab=99.96  E-value=7.2e-29  Score=219.54  Aligned_cols=220  Identities=17%  Similarity=0.189  Sum_probs=166.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .+|..+++|............++.++.+...+  ..|.+++........ ....|+||||+.|++|.+++... ..+.+.
T Consensus        18 ~~~~~~a~k~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~   94 (252)
T cd05084          18 ADNTPVAVKSCRETLPPDLKAKFLQEARILKQ--YSHPNIVRLIGVCTQ-KQPIYIVMELVQGGDFLTFLRTEGPRLKVK   94 (252)
T ss_pred             cCCceEEEEecCccCCHHHHHHHHHHHHHHHh--CCCCCcceEEEEEcC-CCCeEEEEeeccCCcHHHHHHhCCCCCCHH
Confidence            35778899988777777777778888776665  367777766655433 45789999999999999988653 357888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCC-----CccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTN-----DIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~-----~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++.........     ..++..|+|||.+.+..++
T Consensus        95 ~~~~~~~qi~~~L~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  174 (252)
T cd05084          95 ELIQMVENAAAGMEYLESKHCIHRDLAARNCLVTEKNVLKISDFGMSREEEDGVYASTGGMKQIPVKWTAPEALNYGRYS  174 (252)
T ss_pred             HHHHHHHHHHHHHHHHHhCCccccccchheEEEcCCCcEEECccccCcccccccccccCCCCCCceeecCchhhcCCCCC
Confidence            899999999999999999999998    9999999999999999998654322111     1224569999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||....      .......+..  +.                                 
T Consensus       175 ~~~Dv~slG~il~e~~~~~~~p~~~~~------~~~~~~~~~~--~~---------------------------------  213 (252)
T cd05084         175 SESDVWSFGILLWEAFSLGAVPYANLS------NQQTREAIEQ--GV---------------------------------  213 (252)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCccccC------HHHHHHHHHc--CC---------------------------------
Confidence            99999999999999997 888885332      1111111110  00                                 


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+|+.+||+.||++|||+.++++
T Consensus       214 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  248 (252)
T cd05084         214 ------RLPCPELCPDAVYRLMERCWEYDPGQRPSFSTVHQ  248 (252)
T ss_pred             ------CCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                  01122334678899999999999999999999974

Protein Tyrosine Kinase (PTK) family; Fes (or Fps) kinase subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr kinase activity. Fes kinase is expressed in myeloid, vascular

>KOG0584 consensus Serine/threonine protein kinase [General function prediction only]

Probab=99.96  E-value=2.9e-29  Score=233.29  Aligned_cols=227  Identities=15%  Similarity=0.206  Sum_probs=177.2

Q ss_pred             cccCcccc-cccccCccchhhh--HHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccc
Q 045353           19 TESSASKE-NKSLYGDLTKNQK--KKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        19 ~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+.|..|| .-+-..++.++.+  .|+..++.-...  +.|.+|++.+..-... ...+-+|+|++..|+|+.+......
T Consensus        62 e~~giEVAWnqvk~~d~~q~~~~leR~~~Ev~lLKs--L~H~NIirfy~SW~d~~n~~in~iTEL~TSGtLr~Y~kk~~~  139 (632)
T KOG0584|consen   62 EEEGIEVAWNQVKIRDVTQSPEELERLYSEVHLLKS--LKHPNIIRFYDSWVDTDNKTINFITELFTSGTLREYRKKHRR  139 (632)
T ss_pred             cccchhhHHHHHhHHHhhcChHHHHHHHHHHHHHcc--CCCCceeeeeeheecCCCceeeeeeecccCCcHHHHHHHhcc
Confidence            45566553 2233345556666  555555444444  6889999998886544 3567789999999999999999888


Q ss_pred             cChhhhhHHHHhhhhccccccC--CCCCCc----ccccccCC-CcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRR--PSRATR----KNLLAAVD-VQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~--~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+..-+....+||+.|+.|+|.  +.||||    +||+|+.+ |.|||+|+|+|...... ..+.+|||.|||||++. .
T Consensus       140 vn~kaik~W~RQILkGL~yLHs~~PPIIHRDLKCDNIFinG~~G~VKIGDLGLAtl~r~s~aksvIGTPEFMAPEmYE-E  218 (632)
T KOG0584|consen  140 VNIKAIKSWCRQILKGLVYLHSQDPPIIHRDLKCDNIFVNGNLGEVKIGDLGLATLLRKSHAKSVIGTPEFMAPEMYE-E  218 (632)
T ss_pred             CCHHHHHHHHHHHHHHhhhhhcCCCCccccccccceEEEcCCcCceeecchhHHHHhhccccceeccCccccChHHHh-h
Confidence            9999999999999999999996  567899    99999876 99999999999877654 44569999999999998 5


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHH-h-CCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMEL-L-GMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~-~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      .|+..+||||||+.|+||+|+..||....         .-+.|++. . |..|...                        
T Consensus       219 ~YnE~VDVYaFGMCmLEMvT~eYPYsEC~---------n~AQIYKKV~SGiKP~sl------------------------  265 (632)
T KOG0584|consen  219 NYNELVDVYAFGMCMLEMVTSEYPYSECT---------NPAQIYKKVTSGIKPAAL------------------------  265 (632)
T ss_pred             hcchhhhhhhhhHHHHHHHhccCChhhhC---------CHHHHHHHHHcCCCHHHh------------------------
Confidence            79999999999999999999999996433         33334332 2 2222211                        


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                    ..-..+++++||.+||.. .+.|+|+.|+|.||||...
T Consensus       266 --------------~kV~dPevr~fIekCl~~-~~~R~sa~eLL~d~Ff~~d  302 (632)
T KOG0584|consen  266 --------------SKVKDPEVREFIEKCLAT-KSERLSAKELLKDPFFDED  302 (632)
T ss_pred             --------------hccCCHHHHHHHHHHhcC-chhccCHHHHhhChhhccc
Confidence                          112257899999999999 9999999999999999975

>cd05613 STKc_MSK1_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase 1

Probab=99.96  E-value=4.2e-29  Score=225.78  Aligned_cols=231  Identities=15%  Similarity=0.136  Sum_probs=170.1

Q ss_pred             ccCcccccccccCccchh---hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKN---QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++.......   ..+++.++.+...+. .++.+++....... .+...|+||||++|++|.+++.....+.
T Consensus        26 ~~g~~~aiK~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~l~  103 (290)
T cd05613          26 DSGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHI-RQSPFLVTLHYAFQ-TDTKLHLILDYINGGELFTHLSQRERFK  103 (290)
T ss_pred             CCCceEEEEEeehhhhhhcchHHHHHHHHHHHHHhc-ccCCChhceeeEee-cCCeEEEEEecCCCCcHHHHHHHcCCCC
Confidence            467889999987643322   234455555544443 24556665544333 3467899999999999999988777788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCC--
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS--  166 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~--  166 (358)
                      +..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....|+..|+|||.+.+.  
T Consensus       104 ~~~~~~~~~qi~~al~~lH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  183 (290)
T cd05613         104 EQEVQIYSGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFHEDEVERAYSFCGTIEYMAPDIVRGGDG  183 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeEECCCCCEEEeeCccceecccccccccccccCCcccCChhhccCCCC
Confidence            88999999999999999999999999    9999999999999999999764322    2234689999999999864  


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||......      .....+.+.+..                               
T Consensus       184 ~~~~~~Dv~slG~~l~~ll~g~~p~~~~~~~------~~~~~~~~~~~~-------------------------------  226 (290)
T cd05613         184 GHDKAVDWWSMGVLMYELLTGASPFTVDGEK------NSQAEISRRILK-------------------------------  226 (290)
T ss_pred             CCCccccHHHHHHHHHHHhcCCCCCCcCCcc------ccHHHHHHHhhc-------------------------------
Confidence            3788999999999999999999999632211      011111111000                               


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                             ....++...++.+.+|+.+||+.||++|+     ++++++.||||...
T Consensus       227 -------~~~~~~~~~~~~~~~ll~~~l~~~p~~R~~~~~~~~~~l~~~~~~~~~  274 (290)
T cd05613         227 -------SEPPYPQEMSALAKDIIQRLLMKDPKKRLGCGPSDADEIKKHPFFQKI  274 (290)
T ss_pred             -------cCCCCCccCCHHHHHHHHHHhcCCHHHhcCCCCCCHHHHHcCcccccC
Confidence                   00112333467888999999999999997     89999999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, MSK1, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, which trigger phosphorylation in the activation loop (A-loop) of the CTD of MSK. The active CTD phosphorylates the hydroph

>cd05051 PTKc_DDR Catalytic domain of the Protein Tyrosine Kinases, Discoidin Domain Receptors

Probab=99.96  E-value=8.5e-29  Score=224.34  Aligned_cols=226  Identities=15%  Similarity=0.121  Sum_probs=169.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      .+..+++|.+....+......+.++.+...++  .+++++....... .+...++||||+.+++|.+++....       
T Consensus        45 ~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  121 (296)
T cd05051          45 APVLVAVKVLRPDASDNAREDFLKEVKILSRL--SDPNIARLLGVCT-VDPPLCMIMEYMENGDLNQFLQKHVAETSGLA  121 (296)
T ss_pred             CceeEEEEEecCccCHHHHHHHHHHHHHHHhc--CCCCEeEEEEEEe-cCCCcEEEEecCCCCCHHHHHHhccccccccc
Confidence            34568999999888777788888888777774  4566665554333 2367899999999999999886544       


Q ss_pred             ----ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           94 ----VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        94 ----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                          .+.+..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......     .....+++.|+||
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~al~~LH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  201 (296)
T cd05051         122 CNSKSLSFSTLLYMATQIASGMRYLESLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSSDYYRVQGRAPLPIRWMAW  201 (296)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHcCccccccchhceeecCCCceEEccccceeecccCcceeecCcCCCCceecCH
Confidence                57788999999999999999999999999    9999999999999999999754322     2233567789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc--CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT--GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      |++.+..++.++|||||||++|+|++  +..||....      ....+......+.....                    
T Consensus       202 E~~~~~~~~~~~Dv~slG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~--------------------  255 (296)
T cd05051         202 ESVLLGKFTTKSDVWAFGVTLWEILTLCREQPYEHLT------DQQVIENAGHFFRDDGR--------------------  255 (296)
T ss_pred             HHhhcCCCCccchhhhhHHHHHHHHhcCCCCCCCCcC------hHHHHHHHHhccccccc--------------------
Confidence            99998889999999999999999988  667775332      22222222221110000                    


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                    ......+...+.++.+|+.+||+.||++|||+.|+++
T Consensus       256 --------------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rpt~~el~~  292 (296)
T cd05051         256 --------------QIYLPRPPNCPKDIYELMLECWRRDEEDRPTFREIHL  292 (296)
T ss_pred             --------------cccCCCccCCCHHHHHHHHHHhccChhcCCCHHHHHH
Confidence                          0001122334578999999999999999999999964

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR) subfamily; catalytic (c) domain. The DDR subfamily consists of homologs of mammalian DDR1, DDR2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR subfamily members are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linke

>cd06653 STKc_MEKK3_like_1 Catalytic domain of MAP/ERK kinase kinase 3-like Protein Serine/Threonine Kinases

Probab=99.96  E-value=6.1e-29  Score=221.68  Aligned_cols=225  Identities=20%  Similarity=0.213  Sum_probs=169.9

Q ss_pred             ccCcccccccccCcc----chhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDL----TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+++|.+....    .....+.++++.+...+.  .+++++........ ....+++||||++|++|.+++.....
T Consensus        25 ~~~~~~~ik~~~~~~~~~~~~~~~~~~~~ei~~l~~l--~h~~i~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~  102 (264)
T cd06653          25 DTGRELAVKQVPFDPDSQETSKEVNALECEIQLLKNL--RHDRIVQYYGCLRDPEEKKLSIFVEYMPGGSIKDQLKAYGA  102 (264)
T ss_pred             CCCCEEEEEEEecCcccchhhHHHHHHHHHHHHHHHc--CCCCcceEEEEEEcCCCCEEEEEEEeCCCCcHHHHHHHcCC
Confidence            467788888764322    233445666666655553  56666655544322 23567899999999999998877666


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------CCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~l~  164 (358)
                      +.+..+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.....      ......|+..|+|||++.
T Consensus       103 l~~~~~~~~~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  182 (264)
T cd06653         103 LTENVTRRYTRQILQGVSYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRIQTICMSGTGIKSVTGTPYWMSPEVIS  182 (264)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCEEECccccccccccccccCccccccCCcccccCHhhhc
Confidence            7888899999999999999999999998    999999999999999999975432      123346899999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++|+|||||++|+|++|+.||....         ....+......+.                           
T Consensus       183 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~---------~~~~~~~~~~~~~---------------------------  226 (264)
T cd06653         183 GEGYGRKADVWSVACTVVEMLTEKPPWAEYE---------AMAAIFKIATQPT---------------------------  226 (264)
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCccC---------HHHHHHHHHcCCC---------------------------
Confidence            8889999999999999999999999996321         2222222222111                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                ...++...+..+.++|.+||. +|..|||+.+++.|||.
T Consensus       227 ----------~~~~p~~~~~~~~~~i~~~l~-~~~~r~~~~~~~~~~~~  264 (264)
T cd06653         227 ----------KPMLPDGVSDACRDFLKQIFV-EEKRRPTAEFLLRHPFV  264 (264)
T ss_pred             ----------CCCCCcccCHHHHHHHHHHhc-CcccCccHHHHhcCCCC
Confidence                      112344557889999999999 57999999999999995

Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3 (MEKK3)-like subfamily, catalytic (c) domain, functionally uncharacterized subgroup 1. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MEKK3-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The MEKK3-like subfamily is composed of MEKK3, MEKK2, and related proteins, all containing an N-terminal PB1 domain, which mediates oligomerization, and a C-terminal catalytic domain. MEKK2 and MEKK3 are mitogen-activated protein kinase (MAPK) kinase kinases (MAPKKKs or MKKKs or MAP3Ks), proteins that phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phospho

>KOG4236 consensus Serine/threonine protein kinase PKC mu/PKD and related proteins [Signal transduction mechanisms]

Probab=99.96  E-value=5.9e-30  Score=232.83  Aligned_cols=229  Identities=19%  Similarity=0.195  Sum_probs=182.0

Q ss_pred             cccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           19 TESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .++|..||+|+... .|...+...+|.+-...++  +.|+.+|.+.--.++.+ ..+.|||-+.|.=|.=.+. ..+.++
T Consensus       586 RktGrdVAvKvIdKlrFp~kqesqlR~EVaILq~--l~HPGiV~le~M~ET~e-rvFVVMEKl~GDMLEMILSsEkgRL~  662 (888)
T KOG4236|consen  586 RKTGRDVAVKVIDKLRFPTKQESQLRNEVAILQN--LHHPGIVNLECMFETPE-RVFVVMEKLHGDMLEMILSSEKGRLP  662 (888)
T ss_pred             cccCceeeeeeeecccCCCchHHHHHHHHHHHHh--cCCCCeeEEEEeecCCc-eEEEEehhhcchHHHHHHHhhcccch
Confidence            57899999999987 4555555555666566666  46888888877777765 5778999999877776555 356788


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +.--...+.||+.++.|+|..+|+|-    +|||+.+.   .++||||||+|+...+.  ..+.+|||.|.|||++...+
T Consensus       663 er~TkFlvtQIL~ALr~LH~knIvHCDLKPENVLLas~~~FPQvKlCDFGfARiIgEksFRrsVVGTPAYLaPEVLrnkG  742 (888)
T KOG4236|consen  663 ERITKFLVTQILVALRYLHFKNIVHCDLKPENVLLASASPFPQVKLCDFGFARIIGEKSFRRSVVGTPAYLAPEVLRNKG  742 (888)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcceeeccCCchheeeccCCCCCceeeccccceeecchhhhhhhhcCCccccCHHHHhhcc
Confidence            88889999999999999999999976    99999764   57999999999998755  45669999999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      |+..-|+||+|||+|.-++|..||....        +...+|...-=..                               
T Consensus       743 yNrSLDMWSVGVIiYVsLSGTFPFNEdE--------dIndQIQNAaFMy-------------------------------  783 (888)
T KOG4236|consen  743 YNRSLDMWSVGVIIYVSLSGTFPFNEDE--------DINDQIQNAAFMY-------------------------------  783 (888)
T ss_pred             ccccccceeeeEEEEEEecccccCCCcc--------chhHHhhcccccc-------------------------------
Confidence            9999999999999999999999996322        2222221110001                               


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             +...+.+++..++|||..+|++.-.+|.|.++.|.|||+++.
T Consensus       784 -------Pp~PW~eis~~AidlIn~LLqVkm~kRysvdk~lsh~Wlq~y  825 (888)
T KOG4236|consen  784 -------PPNPWSEISPEAIDLINNLLQVKMRKRYSVDKSLSHPWLQDY  825 (888)
T ss_pred             -------CCCchhhcCHHHHHHHHHHHHHHHHHhcchHhhccchhhhcc
Confidence                   112234568899999999999999999999999999999964

>cd05036 PTKc_ALK_LTK Catalytic domain of the Protein Tyrosine Kinases, Anaplastic Lymphoma Kinase and Leukocyte Tyrosine Kinase

Probab=99.96  E-value=8.5e-29  Score=222.36  Aligned_cols=220  Identities=15%  Similarity=0.180  Sum_probs=164.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      ++..+++|.............+.++......  +.+.+++........ ....|+||||+.||+|.+++....       
T Consensus        35 ~~~~v~ik~~~~~~~~~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~-~~~~~lv~e~~~g~~L~~~i~~~~~~~~~~~  111 (277)
T cd05036          35 VELQVAVKTLPESCSEQDESDFLMEALIMSK--FNHQNIVRLIGVSFE-RLPRFILLELMAGGDLKSFLRENRPRPERPS  111 (277)
T ss_pred             CceeEEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCCCEeeEEEEEcc-CCCcEEEEecCCCCCHHHHHHHhCCCCCCCC
Confidence            4567889988877666666667777665555  356666666554433 346789999999999999876432       


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCceecCCCC-----CCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNACWTHKQF-----TNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE  161 (358)
                      .+.+.++..++.+++.++.++|+.+++|+    +|||++.++   .+||+|||+++......     ....++..|+|||
T Consensus       112 ~~~~~~~~~~~~qi~~~l~~LH~~~ivH~dlkp~nil~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05036         112 SLTMKDLLFCARDVAKGCKYLEENHFIHRDIAARNCLLTCKGPGRVAKIADFGMARDIYRASYYRKGGRAMLPIKWMPPE  191 (277)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCEeecccchheEEEeccCCCcceEeccCccccccCCccceecCCCCCccHhhCCHH
Confidence            46778888999999999999999999998    999998764   58999999997653221     1223356799999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||.+..      .......+.   +..                        
T Consensus       192 ~~~~~~~~~~~DiwslG~il~el~~~g~~pf~~~~------~~~~~~~~~---~~~------------------------  238 (277)
T cd05036         192 AFLDGIFTSKTDVWSFGVLLWEIFSLGYMPYPGRT------NQEVMEFVT---GGG------------------------  238 (277)
T ss_pred             HHhcCCcCchhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHH---cCC------------------------
Confidence            9998889999999999999999996 999997543      112111111   000                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                    ....+...+..+.+++.+||+.||++|||+.++++|
T Consensus       239 --------------~~~~~~~~~~~~~~~i~~cl~~~p~~Rps~~~vl~~  274 (277)
T cd05036         239 --------------RLDPPKGCPGPVYRIMTDCWQHTPEDRPNFATILER  274 (277)
T ss_pred             --------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                          011223346788899999999999999999999986

Protein Tyrosine Kinase (PTK) family; Anaplastic Lymphoma Kinase (ALK) and Leukocyte Tyrosine (tyr) Kinase (LTK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyr residues in protein substrates. ALK and LTK are orphan receptor tyr kinases (RTKs) whose ligands are not yet well-defined. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. They are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. ALK appears to play an important role in mammalian neural development as well

>PF07714 Pkinase_Tyr: Protein tyrosine kinase Protein kinase; unclassified specificity

Probab=99.96  E-value=1.1e-29  Score=226.01  Aligned_cols=220  Identities=17%  Similarity=0.207  Sum_probs=168.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      ..+..|++|.+....+....+.+.++.+...+.  .|++++....... .....++|||||.+|+|.+++...  ..++.
T Consensus        26 ~~~~~V~vk~~~~~~~~~~~~~~~~e~~~l~~l--~h~ni~~~~g~~~-~~~~~~lv~e~~~~g~L~~~L~~~~~~~~~~  102 (259)
T PF07714_consen   26 DKNQPVAVKILKPSSSEEEEEEFLNEIQILRKL--RHPNIVKLYGFCI-ENEPLFLVMEYCPGGSLDDYLKSKNKEPLSE  102 (259)
T ss_dssp             SSEEEEEEEEESTTSSHHHHHHHHHHHHHHHTH--SBTTBE-EEEEEE-SSSSEEEEEE--TTEBHHHHHHHTCTTTSBH
T ss_pred             CCCEEEEEEEeccccccccceeeeecccccccc--ccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            345688999998877777788888888877764  6777777766555 445589999999999999998875  67888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .++..++.+++.|+.|+|+.+++|+    .|||++.++.+||+|||++......     .....+...|+|||.+.+..+
T Consensus       103 ~~~~~i~~~i~~~l~~Lh~~~iiH~~l~~~nill~~~~~~Kl~~f~~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  182 (259)
T PF07714_consen  103 QQRLSIAIQIAEALSYLHSNNIIHGNLSPSNILLDSNGQVKLSDFGLSRPISEKSKYKNDSSQQLPLRYLAPEVLKDGEY  182 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEEST-SGGGEEEETTTEEEEESTTTGEETTTSSSEEESTTSESGGGGS-HHHHHHSEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999998    8999999999999999999776321     223456778999999999889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++||||||+++||+++ |+.||....      ..+....+.+.                                   
T Consensus       183 ~~ksDVysfG~~l~ei~~~~~~p~~~~~------~~~~~~~~~~~-----------------------------------  221 (259)
T PF07714_consen  183 TKKSDVYSFGMLLYEILTLGKFPFSDYD------NEEIIEKLKQG-----------------------------------  221 (259)
T ss_dssp             SHHHHHHHHHHHHHHHHTTSSGTTTTSC------HHHHHHHHHTT-----------------------------------
T ss_pred             cccccccccccccccccccccccccccc------ccccccccccc-----------------------------------
Confidence            999999999999999999 778885432      22222222100                                   


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            .....+..++..+.++|..||..||++|||+.++++
T Consensus       222 ------~~~~~~~~~~~~~~~li~~C~~~~p~~RPs~~~i~~  257 (259)
T PF07714_consen  222 ------QRLPIPDNCPKDIYSLIQQCWSHDPEKRPSFQEILQ  257 (259)
T ss_dssp             ------EETTSBTTSBHHHHHHHHHHT-SSGGGS--HHHHHH
T ss_pred             ------ccceeccchhHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence                  011233445778899999999999999999999975

Tyrosine kinase, catalytic domain; InterPro: IPR001245 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. ; GO: 0004672 protein kinase activity, 0006468 protein phosphorylation; PDB: 2HYY_C 1OPL_A 2V7A_A 2G2H_B 2G1T_A 3PYY_A 3CS9_D 2HZI_A 2E2B_A 2HIW_A ....

>cd05116 PTKc_Syk Catalytic domain of the Protein Tyrosine Kinase, Spleen tyrosine kinase

Probab=99.96  E-value=1.2e-28  Score=218.90  Aligned_cols=219  Identities=17%  Similarity=0.191  Sum_probs=164.6

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .++..+|+|.+...... .....+.++......  ..+++++.......  ....++||||+.+|+|.+++.....+++.
T Consensus        20 ~~~~~~aiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~~~~~   95 (257)
T cd05116          20 KSEKTVAVKILKNDNNDPALKDELLREANVMQQ--LDNPYIVRMIGICE--AESWMLVMELAELGPLNKFLQKNKHVTEK   95 (257)
T ss_pred             CCceEEEEEEccCCCCcHHHHHHHHHHHHHHHh--CCCCCcceEEEEEc--CCCcEEEEecCCCCcHHHHHHhcCCCCHH
Confidence            45667899988755432 334555666555554  35666666654432  34578999999999999998776778889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .+..++.+++.++.++|+.+++|+    .|||++.++.+||+|||++.......      ....++..|+|||++.+..+
T Consensus        96 ~~~~i~~qi~~al~~lH~~~i~H~dlkp~nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  175 (257)
T cd05116          96 NITELVHQVSMGMKYLEETNFVHRDLAARNVLLVTQHYAKISDFGLSKALGADENYYKAKTHGKWPVKWYAPECMNYYKF  175 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeecccchhhEEEcCCCeEEECCCccccccCCCCCeeeecCCCCCCccccCHhHhccCCc
Confidence            999999999999999999999988    99999999999999999997654321      22234678999999988889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||....      .......+..  +.                                
T Consensus       176 ~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~i~~--~~--------------------------------  215 (257)
T cd05116         176 SSKSDVWSFGVLMWEAFSYGQKPYKGMK------GNEVTQMIES--GE--------------------------------  215 (257)
T ss_pred             CchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHC--CC--------------------------------
Confidence            999999999999999997 999996543      2222222211  00                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+.++.+||.+||+.||++|||+++|..
T Consensus       216 -------~~~~~~~~~~~l~~li~~~~~~~p~~Rp~~~~i~~  250 (257)
T cd05116         216 -------RMECPQRCPPEMYDLMKLCWTYGVDERPGFAVVEL  250 (257)
T ss_pred             -------CCCCCCCCCHHHHHHHHHHhccCchhCcCHHHHHH
Confidence                   01223345678999999999999999999998864

Protein Tyrosine Kinase (PTK) family; Spleen tyrosine kinase (Syk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk, together with Zap-70, form the Syk subfamily of kinases which are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. Syk was first cloned from the spleen, and its function in hematopoietic cells is well-established. Syk is involved in the signaling downstream of activated receptors (including B-cell and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferatio

>cd08215 STKc_Nek Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase

Probab=99.96  E-value=6.6e-29  Score=219.86  Aligned_cols=223  Identities=16%  Similarity=0.172  Sum_probs=169.8

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----ccc
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----VVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----~~~   95 (358)
                      ++..+++|.+..... +..++.+.++.+...+.  .+++++...+.... ....|+||||++|++|.+++...    ..+
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~~~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  100 (258)
T cd08215          24 DGKLYVLKEIDLSNMSEKEREDALNEVKILKKL--NHPNIIKYYESFEE-KGKLCIVMEYADGGDLSQKIKKQKKEGKPF  100 (258)
T ss_pred             CCcEEEEEEeecccCChHHHHHHHHHHHHHHhc--CCCChhheEEEEec-CCEEEEEEEecCCCcHHHHHHHhhccCCCc
Confidence            567888888876543 35566677776665553  34544444433322 36889999999999999988753    567


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +..++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||.+......   .....|++.|+|||.+.+..+
T Consensus       101 ~~~~~~~i~~~i~~~l~~lh~~~~~H~dl~~~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~  180 (258)
T cd08215         101 PEEQILDWFVQLCLALKYLHSRKILHRDIKPQNIFLTSNGLVKLGDFGISKVLSSTVDLAKTVVGTPYYLSPELCQNKPY  180 (258)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEecccCChHHeEEcCCCcEEECCccceeecccCcceecceeeeecccChhHhccCCC
Confidence            888999999999999999999999998    9999999999999999999765432   233478899999999998889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|+||+|+++++|++|..||...+      .......+   ....                                
T Consensus       181 ~~~~Dv~slG~~~~~l~~g~~p~~~~~------~~~~~~~~---~~~~--------------------------------  219 (258)
T cd08215         181 NYKSDIWSLGCVLYELCTLKHPFEGEN------LLELALKI---LKGQ--------------------------------  219 (258)
T ss_pred             CccccHHHHHHHHHHHHcCCCCCCCCc------HHHHHHHH---hcCC--------------------------------
Confidence            999999999999999999999995432      11111111   0000                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                            ....+...+..+.+++.+||..+|++|||+.++|+||||
T Consensus       220 ------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~ll~~~~~  258 (258)
T cd08215         220 ------YPPIPSQYSSELRNLVSSLLQKDPEERPSIAQILQSPFI  258 (258)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCCCC
Confidence                  001122346788999999999999999999999999998

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase (Nek) family, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The Nek family is composed of 11 different mammalian members (Nek1-11) with similarity to the catalytic domain of Aspergillus nidulans NIMA kinase, the founding member of the Nek family which was identified in a screen for cell cycle mutants that were prevented from entering mitosis. Neks contain a conserved N-terminal catalytic domain and a more divergent C-terminal regulatory region of various sizes and structures. They

>cd06606 STKc_MAPKKK Catalytic domain of the Protein Serine/Threonine Kinase, Mitogen-Activated Protein Kinase Kinase Kinase

Probab=99.96  E-value=1.3e-28  Score=217.87  Aligned_cols=226  Identities=21%  Similarity=0.237  Sum_probs=173.6

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+++|....... ......++++.+...++  .+.+++......... ....++||||++|++|.+++.....+++.
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  101 (260)
T cd06606          24 TGELMAVKSVELSGDSEEELEALEREIRILSSL--QHPNIVRYYGSERDEEKNTLNIFLEYVSGGSLSSLLKKFGKLPEP  101 (260)
T ss_pred             CCcEEEEEEeeccccchHHHHHHHHHHHHHHHc--CCCCEeeEEEEEecCCCCeEEEEEEecCCCcHHHHHHHcCCCCHH
Confidence            577888888766543 34456666666666653  456555554443322 36789999999999999998876678889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..++.+++.++.++|+.+++|+    +||+++.++.++|+|||.+......     .....++..|+|||.+.+..++
T Consensus       102 ~~~~~~~~l~~~l~~lh~~~~~h~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~  181 (260)
T cd06606         102 VIRKYTRQILEGLAYLHSNGIVHRDIKGANILVDSDGVVKLADFGCAKRLGDIETGEGTGSVRGTPYWMAPEVIRGEEYG  181 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEcCCCCEEEcccccEEecccccccccccCCCCCccccCHhhhcCCCCC
Confidence            999999999999999999999988    9999999999999999999766543     3445788999999999988899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++++|++|..||....        .....+..+...                                  
T Consensus       182 ~~~Dv~slG~il~~l~~g~~p~~~~~--------~~~~~~~~~~~~----------------------------------  219 (260)
T cd06606         182 RAADIWSLGCTVIEMATGKPPWSELG--------NPMAALYKIGSS----------------------------------  219 (260)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCC--------chHHHHHhcccc----------------------------------
Confidence            99999999999999999999996443        111111111100                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                         ......+...+..+.+||.+||+.||.+|||+.++++||||
T Consensus       220 ---~~~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~ll~~~~~  260 (260)
T cd06606         220 ---GEPPEIPEHLSEEAKDFLRKCLRRDPKKRPTADELLQHPFL  260 (260)
T ss_pred             ---CCCcCCCcccCHHHHHHHHHhCcCChhhCCCHHHHhhCCCC
Confidence               00112233446789999999999999999999999999998

Serine/threonine kinases (STKs), mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAPKKK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAPKKKs (MKKKs or MAP3Ks) are also called MAP/ERK kinase kinases (MEKKs) in some cases. They phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. This subfamily is composed of the Apoptosis Signal-regulating Kinases ASK1 (or MAPKK

>cd05060 PTKc_Syk_like Catalytic domain of Spleen Tyrosine Kinase-like Protein Tyrosine Kinases

Probab=99.96  E-value=1.3e-28  Score=218.66  Aligned_cols=217  Identities=17%  Similarity=0.166  Sum_probs=166.4

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      +..+++|...........+.+.++.+...+  ..|.+++.......  ....++||||+++|+|.+++.....+.+..+.
T Consensus        23 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~   98 (257)
T cd05060          23 EVEVAVKTLKQEHIAAGKKEFLREASVMAQ--LDHPCIVRLIGVCK--GEPLMLVMELAPLGPLLKYLKKRREIPVSDLK   98 (257)
T ss_pred             cceEEEEecccccchHHHHHHHHHHHHHHh--cCCCCeeeEEEEEc--CCceEEEEEeCCCCcHHHHHHhCCCCCHHHHH
Confidence            357889998877766666677777766665  35676766665443  34579999999999999999876678889999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC------CCccCCCcchhHHHhCCCCCcc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~------~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||++........      ...++..|+|||.+.+..++.+
T Consensus        99 ~~~~qi~~~l~~lh~~~i~H~di~p~nili~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  178 (257)
T cd05060          99 ELAHQVAMGMAYLESKHFVHRDLAARNVLLVNRHQAKISDFGMSRALGAGSDYYRATTAGRWPLKWYAPECINYGKFSSK  178 (257)
T ss_pred             HHHHHHHHHHHHHhhcCeeccCcccceEEEcCCCcEEeccccccceeecCCcccccccCccccccccCHHHhcCCCCCcc
Confidence            999999999999999999998    999999999999999999976532211      1123457999999998889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |.+||....      ..+....+.. ..                                    
T Consensus       179 ~Di~slG~~l~~~~~~g~~p~~~~~------~~~~~~~~~~-~~------------------------------------  215 (257)
T cd05060         179 SDVWSYGVTLWEAFSYGAKPYGEMK------GAEVIAMLES-GE------------------------------------  215 (257)
T ss_pred             chHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHc-CC------------------------------------
Confidence            999999999999998 999996432      1111111110 00                                    


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                          ....+...+..+.++|.+||..||++|||+.++++
T Consensus       216 ----~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~~l~~  250 (257)
T cd05060         216 ----RLPRPEECPQEIYSIMLSCWKYRPEDRPTFSELES  250 (257)
T ss_pred             ----cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                01122334678899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Spleen Tyrosine Kinase (Syk) subfamily; catalytic (c) domain. The Syk subfamily is composed of Syk, ZAP-70, Shark, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Syk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing two Src homology 2 (SH2) domains N-terminal to the catalytic tyr kinase domain. They are involved in the signaling downstream of activated receptors (including B-cell, T-cell, and Fc receptors) that contain ITAMs (immunoreceptor tyr activation motifs), leading to processes such as cell proliferation, differentiation, survival, adhesion, mi

>cd05091 PTKc_Ror2 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 2

Probab=99.96  E-value=1.3e-28  Score=221.73  Aligned_cols=221  Identities=13%  Similarity=0.131  Sum_probs=165.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      +.+..+|+|.+........+..++++.....+  ..+++++........ ....++++||+.+++|.+++...       
T Consensus        33 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~--l~h~~iv~~~~~~~~-~~~~~~~~e~~~~~~l~~~l~~~~~~~~~~  109 (283)
T cd05091          33 EQTQAVAIKTLKDKAEGPLREEFKHEAMMRSR--LQHPNIVCLLGVVTK-EQPLSMIFSYCSHSDLHEFLVMRSPHSDVG  109 (283)
T ss_pred             CceeEEEEEEccCCCCHHHHHHHHHHHHHHhc--CCCCCcCeEEEEEcC-CCceEEEEEcCCCCcHHHHHHhcCCCcccc
Confidence            34567899999876655555566666555444  456777776654433 34578999999999999887421       


Q ss_pred             ---------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           93 ---------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        93 ---------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                               ..+....+..++.|++.++.++|+.+++|+    +|||+++++.+||+|||+++.....     .....++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~ql~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~  189 (283)
T cd05091         110 STDDDKTVKSTLEPADFVHIVTQIAAGMEFLSSHHVVHKDLATRNVLVFDKLNVKISDLGLFREVYAADYYKLMGNSLLP  189 (283)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHHHHHHHcCccccccchhheEecCCCceEecccccccccccchheeeccCccCC
Confidence                     235666788899999999999999999999    9999999999999999998754321     2233567


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+..      ..+.+..+...-                    
T Consensus       190 ~~y~aPE~~~~~~~~~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~i~~~~--------------------  243 (283)
T cd05091         190 IRWMSPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDVIEMIRNRQ--------------------  243 (283)
T ss_pred             ccccCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHcCC--------------------
Confidence            89999999998889999999999999999998 888886543      222222221100                    


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ....+..++..+.+|+.+||+.||.+|||++++++.
T Consensus       244 ---------------------~~~~~~~~~~~~~~li~~cl~~~p~~RP~~~~i~~~  279 (283)
T cd05091         244 ---------------------VLPCPDDCPAWVYTLMLECWNEFPSRRPRFKDIHSR  279 (283)
T ss_pred             ---------------------cCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHHH
Confidence                                 001233456778999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 2 (Ror2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd05088 PTKc_Tie2 Catalytic domain of the Protein Tyrosine Kinase, Tie2

Probab=99.95  E-value=9.8e-29  Score=224.93  Aligned_cols=218  Identities=13%  Similarity=0.114  Sum_probs=162.3

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----------   93 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----------   93 (358)
                      .+++|.+....++.....+.++.+...+. .+|.+++....... .+...|+||||++||+|.+++....          
T Consensus        36 ~~~ik~~~~~~~~~~~~~~~~Ei~~l~~l-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  113 (303)
T cd05088          36 DAAIKRMKEYASKDDHRDFAGELEVLCKL-GHHPNIINLLGACE-HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI  113 (303)
T ss_pred             eEEEEEecccCCHHHHHHHHHHHHHHHHh-cCCCCcceEEEEEC-CCCCceEEEEeCCCCcHHHHHHhcccccccccccc
Confidence            34777777666666777777777666554 25666666655443 3457899999999999999886432          


Q ss_pred             ------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCC--CccCCCcchhH
Q 045353           94 ------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTN--DIQTRQYRCPE  161 (358)
Q Consensus        94 ------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~--~~gt~~Y~aPE  161 (358)
                            .+.+.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.........  ..++..|+|||
T Consensus       114 ~~~~~~~l~~~~~~~~~~qi~~al~~LH~~gi~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  193 (303)
T cd05088         114 ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE  193 (303)
T ss_pred             cccccCcCCHHHHHHHHHHHHHHHHHHHhCCccccccchheEEecCCCcEEeCccccCcccchhhhcccCCCcccccCHH
Confidence                  35677889999999999999999999999    9999999999999999998643322112  23456799999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||.+..      ..+....+.   ...                        
T Consensus       194 ~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~---~~~------------------------  240 (303)
T cd05088         194 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLP---QGY------------------------  240 (303)
T ss_pred             HHhccCCcccccchhhhhHHHHHHhcCCCCcccCC------hHHHHHHHh---cCC------------------------
Confidence            9988889999999999999999998 999996433      111111110   000                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                    ....+...+..+.+||.+||+.+|++|||+++++++
T Consensus       241 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~  276 (303)
T cd05088         241 --------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  276 (303)
T ss_pred             --------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                          001122235678999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tie2; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie2 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie2 is expressed mainly in endothelial cells and hematopoietic stem cells. It is also found in a subset of tumor-associated monocytes and eosinophils. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2. The binding of A

>cd06647 STKc_PAK_I Catalytic domain of the Protein Serine/Threonine Kinase, Group I p21-activated kinase

Probab=99.95  E-value=9.3e-29  Score=224.00  Aligned_cols=227  Identities=18%  Similarity=0.227  Sum_probs=167.0

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..+++|.+.... ......+.++......  ..|++++...+... .....|+|+||++||+|.+++... .+.+.++
T Consensus        43 ~~~~v~iK~~~~~~-~~~~~~~~~e~~~l~~--l~hp~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~-~l~~~~~  117 (293)
T cd06647          43 TGQEVAIKQMNLQQ-QPKKELIINEILVMRE--NKHPNIVNYLDSYL-VGDELWVVMEYLAGGSLTDVVTET-CMDEGQI  117 (293)
T ss_pred             CCCEEEEEEecccc-chHHHHHHHHHHHHhh--cCCCCeeehhheee-eCCcEEEEEecCCCCcHHHHHhhc-CCCHHHH
Confidence            56678888875332 2223445555544433  35666666554433 345789999999999999988653 4677888


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++......   .....|++.|+|||.+.+..++.++|
T Consensus       118 ~~i~~~l~~al~~LH~~gi~H~dL~p~Nili~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  197 (293)
T cd06647         118 AAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVD  197 (293)
T ss_pred             HHHHHHHHHHHHHHHhCCEeeccCCHHHEEEcCCCCEEEccCcceecccccccccccccCChhhcCchhhccCCCCchhh
Confidence            9999999999999999999999    9999999999999999988654322   23346889999999999888999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      +|||||++|++++|..||......      ..+..+..  +..+                                    
T Consensus       198 v~slG~ll~~ll~g~~pf~~~~~~------~~~~~~~~--~~~~------------------------------------  233 (293)
T cd06647         198 IWSLGIMAIEMVEGEPPYLNENPL------RALYLIAT--NGTP------------------------------------  233 (293)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCChh------hheeehhc--CCCC------------------------------------
Confidence            999999999999999999654311      11100000  0000                                    


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                       ....+...+..+.+||.+||..+|++|||+.+++.|+||....
T Consensus       234 -~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~h~~~~~~~  276 (293)
T cd06647         234 -ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHPFLKIAK  276 (293)
T ss_pred             -CCCCccccCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhcCc
Confidence             0111223456788999999999999999999999999998654

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, Group I, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAKs from higher eukaryotes are classified into two groups (I and II), according to their bi

>cd06614 STKc_PAK Catalytic domain of the Protein Serine/Threonine Kinase, p21-activated kinase

Probab=99.95  E-value=6.5e-29  Score=224.11  Aligned_cols=225  Identities=22%  Similarity=0.279  Sum_probs=167.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~   99 (358)
                      .+..+++|++.....  ....+.++.....+.  .+.+++....... .....|+|+||++|++|.+++.... .++...
T Consensus        43 ~~~~~~iK~~~~~~~--~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~~~  117 (286)
T cd06614          43 TGKEVAIKKMRLRKQ--NKELIINEILIMKDC--KHPNIVDYYDSYL-VGDELWVVMEYMDGGSLTDIITQNFVRMNEPQ  117 (286)
T ss_pred             CCcEEEEEEEecCch--hHHHHHHHHHHHHHC--CCCCeeEEEEEEE-ECCEEEEEEeccCCCcHHHHHHHhccCCCHHH
Confidence            466778888765443  445555665555443  4555554443322 2367899999999999999998765 788889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||++.+..++.++
T Consensus       118 ~~~i~~~i~~~L~~lH~~gi~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~  197 (286)
T cd06614         118 IAYVCREVLQGLEYLHSQNVIHRDIKSDNILLSKDGSVKLADFGFAAQLTKEKSKRNSVVGTPYWMAPEVIKRKDYGPKV  197 (286)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeeCCCChhhEEEcCCCCEEECccchhhhhccchhhhccccCCcccCCHhHhcCCCCCCcc
Confidence            99999999999999999999988    9999999999999999988554322   2334578899999999988899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |+|||||++|+|++|..||....      .......+..  ...+                                   
T Consensus       198 Dv~slGvil~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~-----------------------------------  234 (286)
T cd06614         198 DIWSLGIMCIEMAEGEPPYLREP------PLRALFLITT--KGIP-----------------------------------  234 (286)
T ss_pred             ccHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh--cCCC-----------------------------------
Confidence            99999999999999999996432      1111111110  0000                                   


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                        ....+...+..+.+||.+||+.+|.+|||+.++++|+||..
T Consensus       235 --~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~  275 (286)
T cd06614         235 --PLKNPEKWSPEFKDFLNKCLVKDPEKRPSAEELLQHPFLKK  275 (286)
T ss_pred             --CCcchhhCCHHHHHHHHHHhccChhhCcCHHHHhhChHhhc
Confidence              00111223567899999999999999999999999999997

Serine/threonine kinases (STKs), p21-activated kinase (PAK) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The PAK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. PAKs are Rho family GTPase-regulated kinases that serve as important mediators in the function of Cdc42 (cell division cycle 42) and Rac. PAKs are implicated in the regulation of many cellular processes including growth factor receptor-mediated proliferation, cell polarity, cell motility, cell death and survival, and actin cytoskeleton organization. PAK deregulation is associated with tumor development. PAKs from higher eukaryotes are classified into two grou

>cd05105 PTKc_PDGFR_alpha Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor alpha

Probab=99.95  E-value=1.5e-28  Score=231.23  Aligned_cols=219  Identities=15%  Similarity=0.153  Sum_probs=164.8

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----------   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----------   92 (358)
                      ..||+|.+........+..+.++.+....+ ..|++++.+..... .....|+|||||+||+|.+++...          
T Consensus        68 ~~vavK~l~~~~~~~~~~~~~~Ei~~l~~l-~~HpnIv~l~~~~~-~~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~  145 (400)
T cd05105          68 MKVAVKMLKPTARSSEKQALMSELKIMTHL-GPHLNIVNLLGACT-KSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPE  145 (400)
T ss_pred             eEEEEEecCCCCChHHHHHHHHHHHHHHhc-CCCCCeeeEEEEEc-cCCceEEEEEecCCCcHHHHHHHhhhhhhccccc
Confidence            358999998777777777788888776654 24788888776654 346789999999999998876431          


Q ss_pred             --------------------------------------------------------------------------------
Q 045353           93 --------------------------------------------------------------------------------   92 (358)
Q Consensus        93 --------------------------------------------------------------------------------   92 (358)
                                                                                                      
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  225 (400)
T cd05105         146 KPKKDLDIFGINPADESTRSYVILSFENKGDYMDMKQADTTQYVPMLEIKEASKYSDIQRSNYDRPASYKGSNDSEVKNL  225 (400)
T ss_pred             cccccccccCCCcccccccchhhhhhcccccccccccccccccchhhhhhhhhhhhhcccCcccccccccCcchhhHHHH
Confidence                                                                                            


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..+.+.++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......     .....++..|
T Consensus       226 ~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivH~dikp~Nill~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~~~~y  305 (400)
T cd05105         226 LSDDGSEGLTTLDLLSFTYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICDFGLARDIMHDSNYVSKGSTFLPVKW  305 (400)
T ss_pred             HHhcccCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCChHhEEEeCCCEEEEEeCCcceeccccccccccCCcCCCcce
Confidence                  124455677899999999999999999998    9999999999999999999764321     1233567889


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +|||++.+..++.++|||||||++|+|++ |..||.....     +......+..  +.                     
T Consensus       306 ~aPE~~~~~~~~~~~DiwSlGvil~ellt~g~~P~~~~~~-----~~~~~~~~~~--~~---------------------  357 (400)
T cd05105         306 MAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPYPGMIV-----DSTFYNKIKS--GY---------------------  357 (400)
T ss_pred             EChhhhcCCCCCchhhHHHHHHHHHHHHHCCCCCCcccch-----hHHHHHHHhc--CC---------------------
Confidence            99999999889999999999999999997 8899864321     1111111100  00                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                        ....+...+..+.+++.+||+.||++|||+.++.+
T Consensus       358 ------------------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~  392 (400)
T cd05105         358 ------------------RMAKPDHATQEVYDIMVKCWNSEPEKRPSFLHLSD  392 (400)
T ss_pred             ------------------CCCCCccCCHHHHHHHHHHCccCHhHCcCHHHHHH
Confidence                              01122344678899999999999999999998865

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) alpha; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR alpha is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR alpha forms homodimers or heterodimers with PDGFR beta, depending on the nature of the PDGF ligand. PDGF-AA, PDGF-

>cd05032 PTKc_InsR_like Catalytic domain of Insulin Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.8e-28  Score=217.93  Aligned_cols=219  Identities=16%  Similarity=0.199  Sum_probs=165.5

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      .+..+|+|.+...........+.++......  ..+++++.+...... ....|+||||+.+|+|.+++....       
T Consensus        35 ~~~~~aik~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~  111 (277)
T cd05032          35 PETRVAIKTVNENASMRERIEFLNEASVMKE--FNCHHVVRLLGVVST-GQPTLVVMELMAKGDLKSYLRSRRPEAENNP  111 (277)
T ss_pred             cceeEEEEecCCccCHHHHHHHHHHHHHHHh--CCCCceeEEEEEEcC-CCCcEEEEecCCCCCHHHHHHhcccchhhcc
Confidence            3457899998877666666677777665555  356667766655443 467899999999999999875322       


Q ss_pred             ---ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhH
Q 045353           94 ---VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ---~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE  161 (358)
                         ...+..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+++.....     .....++..|+|||
T Consensus       112 ~~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~di~p~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE  191 (277)
T cd05032         112 GLGPPTLQKFIQMAAEIADGMAYLAAKKFVHRDLAARNCMVAEDLTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMAPE  191 (277)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHhCCccccccChheEEEcCCCCEEECCcccchhhccCcccccCCCCCccccccCHH
Confidence               24566888899999999999999999999    8999999999999999998654321     22345678899999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .+.+..++.++|||||||++|++++ |..||...+      .......+.  .+.                         
T Consensus       192 ~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~--~~~-------------------------  238 (277)
T cd05032         192 SLKDGVFTTKSDVWSFGVVLWEMATLAEQPYQGLS------NEEVLKFVI--DGG-------------------------  238 (277)
T ss_pred             HHhcCCCCcccchHHHHHHHHHhhccCCCCCccCC------HHHHHHHHh--cCC-------------------------
Confidence            9988889999999999999999998 999986433      111111111  000                         


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                    ....+...+..+.+||.+||+.+|++|||+.++++
T Consensus       239 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  273 (277)
T cd05032         239 --------------HLDLPENCPDKLLELMRMCWQYNPKMRPTFLEIVS  273 (277)
T ss_pred             --------------CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                          01123334678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Insulin Receptor (InsR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The InsR subfamily is composed of InsR, Insulin-like Growth Factor-1 Receptor (IGF-1R), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. InsR and IGF-1R are receptor tyr kinases (RTKs) composed of two alphabeta heterodimers. Binding of the ligand (insulin, IGF-1, or IGF-2) to the extracellular alpha subunit activates the intracellular tyr kinase domain of the transmembrane beta subunit. Receptor activation leads to autophosphorylation, stimulating downstream kinase activities, which initiate signaling cascades and biological

>cd08219 STKc_Nek3 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 3

Probab=99.95  E-value=1.3e-28  Score=218.38  Aligned_cols=220  Identities=19%  Similarity=0.219  Sum_probs=164.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~   98 (358)
                      +|..+++|...........++++++.....+  ..|.+++...... .....+|+||||++||+|.+++..  ...+.+.
T Consensus        24 ~~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~  100 (255)
T cd08219          24 SDQKYAMKEIRLPKSSSAVEDSRKEAVLLAK--MKHPNIVAFKESF-EADGHLYIVMEYCDGGDLMQKIKLQRGKLFPED  100 (255)
T ss_pred             CCceEEEEEEEcCcchHHHHHHHHHHHHHHh--CCCCCcceEEEEE-EECCEEEEEEeeCCCCcHHHHHHhccCCCCCHH
Confidence            4667788877654444555666666655554  3456666555443 344678999999999999987753  2346788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++......   .....|++.|+|||++.+..++.+
T Consensus       101 ~~~~~~~~i~~al~~lH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~~~~  180 (255)
T cd08219         101 TILQWFVQMCLGVQHIHEKRVLHRDIKSKNIFLTQNGKVKLGDFGSARLLTSPGAYACTYVGTPYYVPPEIWENMPYNNK  180 (255)
T ss_pred             HHHHHHHHHHHHHHHHhhCCcccCCCCcceEEECCCCcEEEcccCcceeecccccccccccCCccccCHHHHccCCcCch
Confidence            889999999999999999999988    9999999999999999999765432   234578999999999998889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|+||+|+++|+|++|..||...+      .......+..  +..                                   
T Consensus       181 ~Dv~slG~i~~~l~~g~~p~~~~~------~~~~~~~~~~--~~~-----------------------------------  217 (255)
T cd08219         181 SDIWSLGCILYELCTLKHPFQANS------WKNLILKVCQ--GSY-----------------------------------  217 (255)
T ss_pred             hhhhhhchhheehhhccCCCCCCC------HHHHHHHHhc--CCC-----------------------------------
Confidence            999999999999999999996432      1111111100  000                                   


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                          ...+...+..+.+||.+||+.||++|||+.+++.-
T Consensus       218 ----~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~il~~  252 (255)
T cd08219         218 ----KPLPSHYSYELRSLIKQMFKRNPRSRPSATTILSR  252 (255)
T ss_pred             ----CCCCcccCHHHHHHHHHHHhCCcccCCCHHHHhhc
Confidence                01122345678899999999999999999999864

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 3 (Nek3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek3 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek3 is primarily localized in the cytoplasm and shows no cell cycle-dependent changes in its activity. It is present in the axons of neurons and affects morphogenesis and polarity through its regulation of microtubule acetylation. Nek3 modulates the signaling of the prolactin receptor through its activati

>cd05103 PTKc_VEGFR2 Catalytic domain of the Protein Tyrosine Kinase, Vascular Endothelial Growth Factor Receptor 2

Probab=99.95  E-value=2.2e-28  Score=226.42  Aligned_cols=224  Identities=15%  Similarity=0.154  Sum_probs=165.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..+|+|.+...........+.++......+. ++++++.............++|||||+||+|.+++...       
T Consensus        35 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~h~niv~~~~~~~~~~~~~~lv~ey~~~g~L~~~i~~~~~~~~~~  113 (343)
T cd05103          35 ATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSNYLRSKRGEFVPY  113 (343)
T ss_pred             ccceeEEEEEeccCCChHHHHHHHHHHHHHHhcc-CCccHhhhcceeecCCCceEEEEeccCCCcHHHHHHhcCCccccc
Confidence            4566899999987665555566777777666642 56677777766555566789999999999999877532       


Q ss_pred             ------------------------------------------------------------cccChhhhhHHHHhhhhccc
Q 045353           93 ------------------------------------------------------------VVNNESSRDNEVKNTSQGVK  112 (358)
Q Consensus        93 ------------------------------------------------------------~~~~~~~~~~~l~~~~~~~~  112 (358)
                                                                                  ..+...++..++.+++.++.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~  193 (343)
T cd05103         114 KTKDARFRQGKSGYGDISEDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAEQEDLYKKVLTLEDLICYSFQVAKGME  193 (343)
T ss_pred             cccccccccccccccchhhhhhhhccccccccccccccccCCCccccchhhhhhhhhhhhccCCHHHHHHHHHHHHHHHH
Confidence                                                                        12355667778999999999


Q ss_pred             cccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHh
Q 045353          113 GHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE  183 (358)
Q Consensus       113 ~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~e  183 (358)
                      |+|+.+++|+    +|||++.++.+||+|||++......     .....++..|+|||++.+..++.++|||||||++|+
T Consensus       194 ~lH~~~i~H~dikp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~e  273 (343)
T cd05103         194 FLASRKCIHRDLAARNILLSENNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWE  273 (343)
T ss_pred             HHHhCCeecCCCccCeEEEcCCCcEEEEecccccccccCcchhhcCCCCCCcceECcHHhcCCCCCchhhHHHHHHHHHH
Confidence            9999999998    9999999999999999999754321     112245678999999999889999999999999999


Q ss_pred             hhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhh
Q 045353          184 LAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERD  262 (358)
Q Consensus       184 ll~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (358)
                      |++ |..||.....     .......+..  +.                                       ....+...
T Consensus       274 l~~~g~~p~~~~~~-----~~~~~~~~~~--~~---------------------------------------~~~~~~~~  307 (343)
T cd05103         274 IFSLGASPYPGVKI-----DEEFCRRLKE--GT---------------------------------------RMRAPDYT  307 (343)
T ss_pred             HHHCCCCCCCCccc-----cHHHHHHHhc--cC---------------------------------------CCCCCCCC
Confidence            996 8899864321     1111111100  00                                       00111223


Q ss_pred             HHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          263 AKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       263 ~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                      ++.+.+++..||+.||++|||+.++++|
T Consensus       308 ~~~~~~~~~~cl~~~p~~Rps~~eil~~  335 (343)
T cd05103         308 TPEMYQTMLDCWHGEPSQRPTFSELVEH  335 (343)
T ss_pred             CHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence            5678899999999999999999999976

Protein Tyrosine Kinase (PTK) family; Vascular Endothelial Growth Factor Receptor 2 (VEGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. VEGFR2 (or Flk1) is a member of the VEGFR subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with seven immunoglobulin (Ig)-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of VEGFRs to their ligands, the VEGFs, leads to receptor dimerization, activation, and intracellular signaling. The carboxyl terminus of VEGFR2 plays an important role in its autophosp

>cd05053 PTKc_FGFR Catalytic domain of the Protein Tyrosine Kinases, Fibroblast Growth Factor Receptors

Probab=99.95  E-value=1.9e-28  Score=221.75  Aligned_cols=219  Identities=18%  Similarity=0.214  Sum_probs=163.1

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-----------   91 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-----------   91 (358)
                      ..+++|.+....+.....++.++....... ..+.+++....... ..+.+|++|||+.+|+|.+++..           
T Consensus        43 ~~~a~k~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~i~~~~~~~~-~~~~~~li~e~~~~~~L~~~l~~~~~~~~~~~~~  120 (293)
T cd05053          43 STVAVKMLKDDATEKDLSDLVSEMEMMKMI-GKHKNIINLLGVCT-QEGPLYVVVEYAAHGNLRDFLRARRPPGEYASPD  120 (293)
T ss_pred             eeEEEEEccCCCCHHHHHHHHHHHHHHHhh-cCCCCeeeEEEEEc-CCCCeEEEEEeCCCCcHHHHHHhcCCCccccccc
Confidence            457888888766655556666676554443 25667766655433 34578999999999999998743           


Q ss_pred             -----ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           92 -----SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        92 -----~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                           ...+++..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+++.....     .....++..|
T Consensus       121 ~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~Nil~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y  200 (293)
T cd05053         121 DPRPPEETLTQKDLVSFAYQVARGMEFLASKKCIHRDLAARNVLVTEDHVMKIADFGLARDIHHIDYYRKTTNGRLPVKW  200 (293)
T ss_pred             cccccccccCHHHHHHHHHHHHHHHHHHHHCCccccccceeeEEEcCCCeEEeCccccccccccccceeccCCCCCCccc
Confidence                 2346777888999999999999999999999    9999999999999999999765432     1122345679


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  +.                     
T Consensus       201 ~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~---------------------  251 (293)
T cd05053         201 MAPEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLKE--GY---------------------  251 (293)
T ss_pred             cCHHHhccCCcCcccceeehhhHHHHHhcCCCCCCCCCC------HHHHHHHHHc--CC---------------------
Confidence            99999998889999999999999999997 888986433      1111111110  00                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                        ....+...+..+.+|+.+||..||++|||+.+++++
T Consensus       252 ------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~eil~~  287 (293)
T cd05053         252 ------------------RMEKPQNCTQELYHLMRDCWHEVPSQRPTFKQLVED  287 (293)
T ss_pred             ------------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence                              011223346788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor (FGFR) subfamily; catalytic (c) domain. The FGFR subfamily consists of FGFR1, FGFR2, FGFR3, FGFR4, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K).PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, and to heparin/heparan sulfate (HS) results in the formation of a ternary complex, which leads to receptor dimerization and activation,

>cd05039 PTKc_Csk_like Catalytic domain of C-terminal Src kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.9e-28  Score=217.41  Aligned_cols=218  Identities=18%  Similarity=0.190  Sum_probs=166.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~   97 (358)
                      ..|..+++|.+.....  ..+++.++.......  .+.+++........ ....|+||||+++++|.+++....  .+.+
T Consensus        27 ~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~-~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~  101 (256)
T cd05039          27 YRGQKVAVKCLKDDST--AAQAFLAEASVMTTL--RHPNLVQLLGVVLQ-GNPLYIVTEYMAKGSLVDYLRSRGRAVITL  101 (256)
T ss_pred             ecCcEEEEEEeccchh--HHHHHHHHHHHHHhc--CCcceeeeEEEEcC-CCCeEEEEEecCCCcHHHHHHhcCCCCCCH
Confidence            3477889999887755  556666666655553  45555555444333 567899999999999999987654  6788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||.+...........++..|+|||.+.+..++.++|
T Consensus       102 ~~~~~~~~qi~~~l~~lh~~~i~H~di~p~Nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~ape~~~~~~~~~~~D  181 (256)
T cd05039         102 AQQLGFALDVCEGMEYLEEKNFVHRDLAARNVLVSEDLVAKVSDFGLAKEASQGQDSGKLPVKWTAPEALREKKFSTKSD  181 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccchhcccceEEEeCCCCEEEcccccccccccccccCCCcccccCchhhcCCcCCcHHH
Confidence            9999999999999999999999998    999999999999999999977654444445567899999998888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|++++ |..||....      ..+....+..  +.                                     
T Consensus       182 i~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~~-------------------------------------  216 (256)
T cd05039         182 VWSFGILLWEIYSFGRVPYPRIP------LKDVVPHVEK--GY-------------------------------------  216 (256)
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHhc--CC-------------------------------------
Confidence            9999999999997 999986432      1111111110  00                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        ....+...++.+.+||.+||..+|++|||+.++++
T Consensus       217 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  251 (256)
T cd05039         217 --RMEAPEGCPPEVYKVMKDCWELDPAKRPTFKQLRE  251 (256)
T ss_pred             --CCCCccCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence              00112234678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; C-terminal Src kinase (Csk) subfamily; catalytic (c) domain. The Csk subfamily is composed of Csk, Chk, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, Csk and Chk are translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Csk

>KOG1187 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=3.6e-28  Score=223.99  Aligned_cols=244  Identities=19%  Similarity=0.185  Sum_probs=178.8

Q ss_pred             cccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           13 KTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      .+=+.+..+|..||+|.+.....++ .+.+..+....+..  .|++++.+.......+....+|+|||.+|+|.+.+...
T Consensus        90 ~VYkG~l~~~~~vAVK~~~~~~~~~-~~eF~~Ei~~ls~l--~H~Nlv~LlGyC~e~~~~~~LVYEym~nGsL~d~L~~~  166 (361)
T KOG1187|consen   90 TVYKGVLSDGTVVAVKRLSSNSGQG-EREFLNEVEILSRL--RHPNLVKLLGYCLEGGEHRLLVYEYMPNGSLEDHLHGK  166 (361)
T ss_pred             EEEEEEECCCCEEEEEEecCCCCcc-hhHHHHHHHHHhcC--CCcCcccEEEEEecCCceEEEEEEccCCCCHHHHhCCC
Confidence            3556778888899999888877765 56688888888874  58888888776554333689999999999999988754


Q ss_pred             c--ccChhhhhHHHHhhhhccccccCCC---CCCc----ccccccCCCcEEEEecCCceecCC-CCC--CC-ccCCCcch
Q 045353           93 V--VNNESSRDNEVKNTSQGVKGHRRPS---RATR----KNLLAAVDVQCKLVDFGNACWTHK-QFT--ND-IQTRQYRC  159 (358)
Q Consensus        93 ~--~~~~~~~~~~l~~~~~~~~~~h~~~---~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~--~~-~gt~~Y~a  159 (358)
                      .  .++|.+...|...++.|+.|+|...   +|||    .|||||+++..||+|||+|+.... ...  .. .||.+|+|
T Consensus       167 ~~~~L~W~~R~kIa~g~A~gL~yLH~~~~~~iiHrDiKssNILLD~~~~aKlsDFGLa~~~~~~~~~~~~~~~gt~gY~~  246 (361)
T KOG1187|consen  167 KGEPLDWETRLKIALGAARGLAYLHEGCPPPIIHRDIKSSNILLDEDFNAKLSDFGLAKLGPEGDTSVSTTVMGTFGYLA  246 (361)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCEecCCCCHHHeeECCCCCEEccCccCcccCCccccceeeecCCCCccCC
Confidence            4  7899999999999999999999854   7899    999999999999999999976654 322  22 89999999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ||.+..+..+.++|||||||+|.|+++|+.+.+.........-.++.   ...+...                   .+..
T Consensus       247 PEy~~~g~lt~KsDVySFGVvllElitgr~~~d~~~~~~~~~l~~w~---~~~~~~~-------------------~~~e  304 (361)
T KOG1187|consen  247 PEYASTGKLTEKSDVYSFGVVLLELITGRKAVDQSRPRGELSLVEWA---KPLLEEG-------------------KLRE  304 (361)
T ss_pred             hhhhccCCcCcccccccchHHHHHHHhCCcccCCCCCcccccHHHHH---HHHHHCc-------------------chhh
Confidence            99999888999999999999999999999888643311111111111   1111000                   0000


Q ss_pred             hhhccCCcchhhHHhhhcCCh-hhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNE-RDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      +.+...      ..  ...+. .....+..+...|++.+|.+||++.||++
T Consensus       305 iiD~~l------~~--~~~~~~~~~~~~~~~a~~C~~~~~~~RP~m~~Vv~  347 (361)
T KOG1187|consen  305 IVDPRL------KE--GEYPDEKEVKKLAELALRCLRPDPKERPTMSQVVK  347 (361)
T ss_pred             eeCCCc------cC--CCCChHHHHHHHHHHHHHHcCcCCCcCcCHHHHHH
Confidence            000000      00  01121 23456889999999999999999999754

>cd06627 STKc_Cdc7_like Catalytic domain of Cell division control protein 7-like Protein Serine/Threonine Kinases

Probab=99.95  E-value=2.2e-28  Score=216.27  Aligned_cols=223  Identities=22%  Similarity=0.229  Sum_probs=170.0

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .|..+++|....... +.....+.++.+.....  .+++++....... .....|+||||++|++|.+++.....+++..
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~l~~~~  100 (254)
T cd06627          24 TGDFVAIKQISLEKIKEEALKSIMQEIDLLKNL--KHPNIVKYIGSIE-TSDSLYIILEYAENGSLRQIIKKFGPFPESL  100 (254)
T ss_pred             CCcEEEEEEecccccCHHHHHHHHHHHHHHHhC--CCCCccEEEEEEE-eCCEEEEEEecCCCCcHHHHHHhccCCCHHH
Confidence            456788888766532 24455666666655553  3444444333322 2467899999999999999988777788999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC---CCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF---TNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~---~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++.......   ....++..|+|||.+.+..++.++
T Consensus       101 ~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~  180 (254)
T cd06627         101 VAVYVYQVLQGLAYLHEQGVIHRDIKAANILTTKDGVVKLADFGVATKLNDVSKDDASVVGTPYWMAPEVIEMSGASTAS  180 (254)
T ss_pred             HHHHHHHHHHHHHHHhhCCcccCCCCHHHEEECCCCCEEEeccccceecCCCcccccccccchhhcCHhhhcCCCCCcch
Confidence            99999999999999999999999    99999999999999999997655332   244788999999999888889999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||+|+++|+|++|..||....      .......+.  ...                                     
T Consensus       181 Dv~~lG~~l~~l~~g~~p~~~~~------~~~~~~~~~--~~~-------------------------------------  215 (254)
T cd06627         181 DIWSLGCTVIELLTGNPPYYDLN------PMAALFRIV--QDD-------------------------------------  215 (254)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHh--ccC-------------------------------------
Confidence            99999999999999999996432      111111110  000                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                        ...++...+..+.+++.+||..+|++|||+.+++.||||
T Consensus       216 --~~~~~~~~~~~~~~~i~~~l~~~p~~R~~~~~~l~~~~~  254 (254)
T cd06627         216 --HPPLPEGISPELKDFLMQCFQKDPNLRPTAKQLLKHPWI  254 (254)
T ss_pred             --CCCCCCCCCHHHHHHHHHHHhCChhhCcCHHHHhcCCCC
Confidence              112233446788999999999999999999999999998

Serine/threonine kinases (STKs), (Cdc7)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Cdc7-like subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Members of this subfamily include Schizosaccharomyces pombe Cdc7, Saccharomyces cerevisiae Cdc15, Arabidopsis thaliana mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK) epsilon, and related proteins. MAPKKKs phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. Fission yeast

>cd08225 STKc_Nek5 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 5

Probab=99.95  E-value=2.2e-28  Score=216.86  Aligned_cols=223  Identities=20%  Similarity=0.239  Sum_probs=166.1

Q ss_pred             cCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           21 SSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      +|..+++|..... +....+..++++.+.....  .+.+++...... ......|+|+||+.|++|.+++...  ..+++
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~E~~~l~~~--~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  100 (257)
T cd08225          24 DSEHCVIKEIDLTKMPVKEKEASKKEVILLAKM--KHPNIVTFFASF-QENGRLFIVMEYCDGGDLMKRINRQRGVLFSE  100 (257)
T ss_pred             CCceEEEEEeeHhhccchhhHHHHHHHHHHHhC--CCCChhhhhhee-ccCCeEEEEEecCCCCcHHHHHHhccCCCCCH
Confidence            4566788877553 3334455666666655553  466666665443 3456789999999999999987643  24678


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +||++++++ .+||+|||.+......   .....|++.|+|||++.+..++
T Consensus       101 ~~~~~~~~~l~~~l~~lh~~~i~H~dl~~~nil~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~ape~~~~~~~~  180 (257)
T cd08225         101 DQILSWFVQISLGLKHIHDRKILHRDIKSQNIFLSKNGMVAKLGDFGIARQLNDSMELAYTCVGTPYYLSPEICQNRPYN  180 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEcCCCCeEEecccccchhccCCcccccccCCCccccCHHHHcCCCCC
Confidence            8899999999999999999999998    999999885 4699999998665432   2234688999999999888899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|+||+||++++|++|..||...+      .....   .......                                 
T Consensus       181 ~~~Dv~slG~il~~l~~g~~p~~~~~------~~~~~---~~~~~~~---------------------------------  218 (257)
T cd08225         181 NKTDIWSLGCVLYELCTLKHPFEGNN------LHQLV---LKICQGY---------------------------------  218 (257)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCcc------HHHHH---HHHhccc---------------------------------
Confidence            99999999999999999999996432      11111   1111100                                 


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           .....+..+..+.++|.+||..+|++|||+.++++||||
T Consensus       219 -----~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~~~~~  257 (257)
T cd08225         219 -----FAPISPNFSRDLRSLISQLFKVSPRDRPSITSILKRPFL  257 (257)
T ss_pred             -----CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHhhCCCC
Confidence                 001122345688999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 5 (Nek5) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek5 subfamily is one of a family of 11 different Neks (Nek1-11). The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Neks are involved in the regulation of downstream processes following the activation of Cdc2, and many of their functions are cell cycle-related. They play critical roles in microtubule dynamics during ciliogenesis and mitosis. The specific function of Nek5 is unknown.

>cd05079 PTKc_Jak1_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=1e-28  Score=222.65  Aligned_cols=237  Identities=16%  Similarity=0.152  Sum_probs=167.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccc-cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      .++..+++|.+..........++.++.+...+.  .+++++......... ....|+||||++|++|.+++... ...++
T Consensus        31 ~~~~~va~K~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~~~~~  108 (284)
T cd05079          31 NTGEQVAVKSLKPESGGNHIADLKKEIEILRNL--YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPRNKNKINL  108 (284)
T ss_pred             CccceEEEEEcCccccHHHHHHHHHHHHHHHhC--CCCCeeeeeeEEecCCCCceEEEEEccCCCCHHHHHHhccCCCCH
Confidence            456678999988766666667777887776664  566666655443332 35678999999999999988654 34688


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....++..|+|||++.+..
T Consensus       109 ~~~~~i~~~i~~aL~~lH~~gi~H~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~  188 (284)
T cd05079         109 KQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDLDSPVFWYAPECLIQSK  188 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeecccchheEEEcCCCCEEECCCccccccccCccceeecCCCCCCccccCHHHhccCC
Confidence            8899999999999999999999999    9999999999999999999764322      12345677899999999888


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|+++..|+....           .......+..+....      ....     ......     
T Consensus       189 ~~~~~Di~slG~il~ellt~~~~~~~~~-----------~~~~~~~~~~~~~~~------~~~~-----~~~~~~-----  241 (284)
T cd05079         189 FYIASDVWSFGVTLYELLTYCDSESSPM-----------TLFLKMIGPTHGQMT------VTRL-----VRVLEE-----  241 (284)
T ss_pred             CCccccchhhhhhhhhhhcCCCCCcccc-----------chhhhhccccccccc------HHHH-----HHHHHc-----
Confidence            9999999999999999999876653211           001111111100000      0000     000000     


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                           ......+..++..+.+|+.+||+.||++|||+++++++
T Consensus       242 -----~~~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~~  279 (284)
T cd05079         242 -----GKRLPRPPNCPEEVYQLMRKCWEFQPSKRTTFQNLIEG  279 (284)
T ss_pred             -----CccCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                 00111233457789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of signal transducers a

>cd08530 STKc_CNK2-like Catalytic domain of the Protein Serine/Threonine Kinase, Chlamydomonas reinhardtii CNK2, and similar domains

Probab=99.95  E-value=4.2e-28  Score=214.84  Aligned_cols=223  Identities=18%  Similarity=0.212  Sum_probs=168.7

Q ss_pred             cCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----cccc
Q 045353           21 SSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~~~   95 (358)
                      +|..+++|.+... ..+..+.++.++.+...+.  .+.+++....... .....|+||||++|++|.+++..    ...+
T Consensus        24 ~~~~~~ik~~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~  100 (256)
T cd08530          24 DNQFYALKEVDLGSMSQKEREDAVNEIRILASV--NHPNIISYKEAFL-DGNKLCIVMEYAPFGDLSKAISKRKKKRKLI  100 (256)
T ss_pred             CCCEEEEEEEehhhccHHHHHHHHHHHHHHHhC--CCCCchhhhhhhc-cCCEEEEEehhcCCCCHHHHHHHHHhhcCCC
Confidence            5667788887653 3445556666666655553  3556665544433 34778999999999999998765    3456


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCc
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .+..+..++.+++.++.++|+.+++|+    .||++++++.+||+|||++...... .....+++.|++||.+.+..++.
T Consensus       101 ~~~~~~~~~~~l~~al~~lh~~~i~h~~l~~~ni~~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~  180 (256)
T cd08530         101 PEQEIWRIFIQLLRGLQALHEQKILHRDLKSANILLVANDLVKIGDLGISKVLKKNMAKTQIGTPHYMAPEVWKGRPYSY  180 (256)
T ss_pred             CHHHHHHHHHHHHHHHHHHhhCCcccCCCCcceEEEecCCcEEEeeccchhhhccCCcccccCCccccCHHHHCCCCCCc
Confidence            778889999999999999999999998    9999999999999999999765433 23346889999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|+||+|+++|+|++|+.||...+      .......+.  .+..                                  
T Consensus       181 ~~D~~slG~~~~~l~~g~~p~~~~~------~~~~~~~~~--~~~~----------------------------------  218 (256)
T cd08530         181 KSDIWSLGCLLYEMATFAPPFEARS------MQDLRYKVQ--RGKY----------------------------------  218 (256)
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHh--cCCC----------------------------------
Confidence            9999999999999999999996543      111111110  0000                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                           ...+...+.++.+++.+||..+|++|||+.++++||++
T Consensus       219 -----~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~~l~~p~~  256 (256)
T cd08530         219 -----PPIPPIYSQDLQNFIRSMLQVKPKLRPNCDKILASPAV  256 (256)
T ss_pred             -----CCCchhhCHHHHHHHHHHcCCCcccCCCHHHHhcCCCC
Confidence                 01122346789999999999999999999999999974

Serine/Threonine Kinases (STKs), Chlamydomonas reinhardtii Never In Mitosis gene A (NIMA)-related kinase 1 (CNK2)-like subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Chlamydomonas reinhardtii CNK2-like subfamily belongs to the (NIMA)-related kinase (Nek) family. The Nek family includes seven different Chlamydomonas Neks (CNKs 1-6 and Fa2). This subfamily includes CNK1, and -2. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Chlamydomonas reinhardtii CNK2 has both cilliary and cell cycle functions. It influences flagellar length through promoting flagellar disassembly, an

>cd05085 PTKc_Fer Catalytic domain of the Protein Tyrosine Kinase, Fer

Probab=99.95  E-value=4e-28  Score=214.45  Aligned_cols=222  Identities=15%  Similarity=0.159  Sum_probs=167.9

Q ss_pred             ccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccC
Q 045353           18 VTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      ....+..+++|..........+.++.++......  ..+++++....... .....|+||||+.||+|.+++.. ...+.
T Consensus        15 ~~~~~~~~a~K~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~   91 (250)
T cd05085          15 TLKDKTPVAVKTCKEDLPQELKIKFLSEARILKQ--YDHPNIVKLIGVCT-QRQPIYIVMELVPGGDFLSFLRKKKDELK   91 (250)
T ss_pred             EecCCcEEEEEecCCcCCHHHHHHHHHHHHHHHh--CCCCCcCeEEEEEe-cCCccEEEEECCCCCcHHHHHHhcCCCCC
Confidence            3456678899998888777666777777766655  35666666555433 34578999999999999998764 34567


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC----CCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT----NDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~----~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++........    ...++..|+|||++.+..+
T Consensus        92 ~~~~~~~~~~i~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  171 (250)
T cd05085          92 TKQLVKFALDAAAGMAYLESKNCIHRDLAARNCLVGENNVLKISDFGMSRQEDDGIYSSSGLKQIPIKWTAPEALNYGRY  171 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeecccChheEEEcCCCeEEECCCccceeccccccccCCCCCCcccccCHHHhccCCC
Confidence            88889999999999999999999998    999999999999999999975443221    1234567999999988889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|++++ |..||.+..      .......+.   ...                               
T Consensus       172 ~~~~Di~slG~ll~~~~~~g~~p~~~~~------~~~~~~~~~---~~~-------------------------------  211 (250)
T cd05085         172 SSESDVWSYGILLWETFSLGVCPYPGMT------NQQAREQVE---KGY-------------------------------  211 (250)
T ss_pred             CchhHHHHHHHHHHHHhcCCCCCCCCCC------HHHHHHHHH---cCC-------------------------------
Confidence            999999999999999998 999996432      111111111   000                               


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+..+.+|+.+||..+|++|||+.++++
T Consensus       212 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  246 (250)
T cd05085         212 -------RMSCPQKCPDDVYKVMQRCWDYKPENRPKFSELQK  246 (250)
T ss_pred             -------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                   00112334678899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Fer kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fer kinase is a member of the Fes subfamily of proteins which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. Fer kinase is expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-c

>cd05089 PTKc_Tie1 Catalytic domain of the Protein Tyrosine Kinase, Tie1

Probab=99.95  E-value=2.5e-28  Score=221.60  Aligned_cols=218  Identities=13%  Similarity=0.103  Sum_probs=160.0

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----------   93 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----------   93 (358)
                      .+++|.+...........+.++.+...+.. .|++++....... .....|+||||+++|+|.+++....          
T Consensus        31 ~~~ik~~~~~~~~~~~~~~~~E~~~l~~l~-~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  108 (297)
T cd05089          31 NAAIKMLKEFASENDHRDFAGELEVLCKLG-HHPNIINLLGACE-NRGYLYIAIEYAPYGNLLDFLRKSRVLETDPAFAK  108 (297)
T ss_pred             eeEEEEccccCCHHHHHHHHHHHHHHHhhc-CCCchhheEEEEc-cCCcceEEEEecCCCcHHHHHHhcccccccccccc
Confidence            357777765444445566777766665542 5666766655433 3457899999999999999875422          


Q ss_pred             ------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCC--ccCCCcchhH
Q 045353           94 ------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTND--IQTRQYRCPE  161 (358)
Q Consensus        94 ------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~--~gt~~Y~aPE  161 (358)
                            .+....+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..........  ..+..|+|||
T Consensus       109 ~~~~~~~l~~~~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE  188 (297)
T cd05089         109 EHGTASTLTSQQLLQFASDVATGMQYLSEKQFIHRDLAARNVLVGENLASKIADFGLSRGEEVYVKKTMGRLPVRWMAIE  188 (297)
T ss_pred             ccCccCCCCHHHHHHHHHHHHHHHHHHHHCCcccCcCCcceEEECCCCeEEECCcCCCccccceeccCCCCcCccccCch
Confidence                  35667889999999999999999999999    99999999999999999986443222222  2355799999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||....      .......+..   ..                        
T Consensus       189 ~~~~~~~~~~~DvwSlG~il~el~t~g~~pf~~~~------~~~~~~~~~~---~~------------------------  235 (297)
T cd05089         189 SLNYSVYTTKSDVWSFGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ---GY------------------------  235 (297)
T ss_pred             hhccCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHhc---CC------------------------
Confidence            9998889999999999999999997 999996433      1111111100   00                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                    ....+..++..+.+||.+||..||.+|||++++++.
T Consensus       236 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~~  271 (297)
T cd05089         236 --------------RMEKPRNCDDEVYELMRQCWRDRPYERPPFAQISVQ  271 (297)
T ss_pred             --------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                          011223346788999999999999999999999764

Protein Tyrosine Kinase (PTK) family; Tie1; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie1 is a receptor tyr kinase (RTK) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. No specific ligand has been identified for Tie1, although the angiopoietin, Ang-1, binds to Tie1 through integrins at high concentrations.

>cd05098 PTKc_FGFR1 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 1

Probab=99.95  E-value=2.5e-28  Score=222.66  Aligned_cols=219  Identities=18%  Similarity=0.208  Sum_probs=162.0

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----------   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----------   92 (358)
                      ..+|+|.+....+......+.++.+..... ..+++++....... .....|+||||+.+|+|.+++...          
T Consensus        51 ~~~aiK~~~~~~~~~~~~~~~~e~~~l~~l-~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~  128 (307)
T cd05098          51 TKVAVKMLKSDATEKDLSDLISEMEMMKMI-GKHKNIINLLGACT-QDGPLYVIVEYASKGNLREYLRARRPPGMEYCYN  128 (307)
T ss_pred             ceEEEEeccCCCChHHHHHHHHHHHHHHHh-cCCCCEeeEEEEEe-cCCceEEEEecCCCCcHHHHHHhcCCcccccccc
Confidence            458888888766555556666666555443 25666666655443 345789999999999999988642          


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..+...++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....++..|
T Consensus       129 ~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~dfg~a~~~~~~~~~~~~~~~~~~~~y  208 (307)
T cd05098         129 PTQVPEEQLSFKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKW  208 (307)
T ss_pred             cccCccccCCHHHHHHHHHHHHHHHHHHHHCCcccccccHHheEEcCCCcEEECCCcccccccccchhhccccCCCccce
Confidence                  235677888999999999999999999998    9999999999999999998654321     1122345689


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      +|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  +.                     
T Consensus       209 ~aPE~~~~~~~~~~~DvwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~---------------------  259 (307)
T cd05098         209 MAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------VEELFKLLKE--GH---------------------  259 (307)
T ss_pred             eChHHhccCCCCcHHHHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHHc--CC---------------------
Confidence            99999999889999999999999999998 888885432      1111111100  00                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                        ....+...+.++.+|+.+||..+|++|||+.+++++
T Consensus       260 ------------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~evl~~  295 (307)
T cd05098         260 ------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  295 (307)
T ss_pred             ------------------CCCCCCcCCHHHHHHHHHHcccChhhCcCHHHHHHH
Confidence                              012233446788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 1 (FGFR1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR1 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05077 PTK_Jak1_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Janus kinase 1

Probab=99.95  E-value=2.6e-28  Score=217.50  Aligned_cols=217  Identities=16%  Similarity=0.134  Sum_probs=157.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      ..+..|++|++...- ......+.+++....+  +.|++++....... .....++||||+++|+|..++.. ...+++.
T Consensus        30 ~~~~~v~~k~~~~~~-~~~~~~~~~~~~~l~~--l~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~  105 (262)
T cd05077          30 EKEIKVILKVLDPSH-RDISLAFFETASMMRQ--VSHKHIVLLYGVCV-RDVENIMVEEFVEFGPLDLFMHRKSDVLTTP  105 (262)
T ss_pred             hhceeEEEeecChhh-hhHHHHHHHHHHHHHh--CCCCCEeeEEEEEe-cCCCCEEEEecccCCCHHHHHHhcCCCCCHH
Confidence            345567888776542 2333455555554444  46777777766543 34577999999999999988764 3457888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCc-------EEEEecCCceecCCCCCCCccCCCcchhHHHhC-C
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ-------CKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-S  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~-------vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~  166 (358)
                      .+..++.|++.|+.|+|+.+++|+    +|||++.++.       +|++|||++..... .....++..|+|||++.+ .
T Consensus       106 ~~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~~~~~~~~~l~d~g~~~~~~~-~~~~~~~~~y~aPE~~~~~~  184 (262)
T cd05077         106 WKFKVAKQLASALSYLEDKDLVHGNVCTKNILLAREGIDGECGPFIKLSDPGIPITVLS-RQECVERIPWIAPECVEDSK  184 (262)
T ss_pred             HHHHHHHHHHHHHHHhhhCCeECCCCCcccEEEecCCccCCCCceeEeCCCCCCccccC-cccccccccccChhhhcCCC
Confidence            899999999999999999999999    9999987664       89999999865432 234568889999999874 5


Q ss_pred             CCCcchhhhhhhHHHHhhh-cCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELA-TGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell-~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .++.++|||||||++|+|+ .|..||.....       .....+   ...                              
T Consensus       185 ~~~~~~DiwslG~~l~el~~~~~~p~~~~~~-------~~~~~~---~~~------------------------------  224 (262)
T cd05077         185 NLSIAADKWSFGTTLWEICYNGEIPLKDKTL-------AEKERF---YEG------------------------------  224 (262)
T ss_pred             CCCchhHHHHHHHHHHHHHhCCCCCCCCcch-------hHHHHH---Hhc------------------------------
Confidence            6899999999999999997 58888753320       000000   000                              


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                               ........+.++.+||.+||+.||.+|||+.+++++
T Consensus       225 ---------~~~~~~~~~~~~~~li~~cl~~dp~~Rp~~~~il~~  260 (262)
T cd05077         225 ---------QCMLVTPSCKELADLMTHCMNYDPNQRPFFRAIMRD  260 (262)
T ss_pred             ---------CccCCCCChHHHHHHHHHHcCCChhhCcCHHHHHHh
Confidence                     001111224678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Janus kinase 1 (Jak1); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak1 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalytic dom

>cd05108 PTKc_EGFR Catalytic domain of the Protein Tyrosine Kinase, Epidermal Growth Factor Receptor

Probab=99.95  E-value=3.2e-28  Score=222.88  Aligned_cols=216  Identities=14%  Similarity=0.115  Sum_probs=163.3

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~~  102 (358)
                      .+|+|.+....+.....++.++.....+  ..|++++........  ...++|+||+.+|+|.+++... ..+....+..
T Consensus        38 ~vaiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~niv~~~g~~~~--~~~~~v~e~~~~g~l~~~l~~~~~~~~~~~~~~  113 (316)
T cd05108          38 PVAIKELREATSPKANKEILDEAYVMAS--VDNPHVCRLLGICLT--STVQLITQLMPFGCLLDYVREHKDNIGSQYLLN  113 (316)
T ss_pred             eEEEEeccccCCHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEcC--CCceeeeecCCCCCHHHHHHhccccCCHHHHHH
Confidence            3788988766655566677777665555  467777776654443  3578999999999999988753 3567778888


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCcchh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+++......     ....++..|+|||++.+..++.++|
T Consensus       114 ~~~qi~~~L~~LH~~~iiH~dlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~~~~~~D  193 (316)
T cd05108         114 WCVQIAKGMNYLEERRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGADEKEYHAEGGKVPIKWMALESILHRIYTHQSD  193 (316)
T ss_pred             HHHHHHHHHHHHHhcCeeccccchhheEecCCCcEEEccccccccccCCCcceeccCCccceeecChHHhccCCCCchhh
Confidence            99999999999999999999    99999999999999999997654221     1223466899999999989999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|+|++ |..||.+..       ...+..+.....                                      
T Consensus       194 i~slGv~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~--------------------------------------  228 (316)
T cd05108         194 VWSYGVTVWELMTFGSKPYDGIP-------ASEISSILEKGE--------------------------------------  228 (316)
T ss_pred             hHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHhCCC--------------------------------------
Confidence            9999999999987 999996432       111111111000                                      


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                        ....+..++..+.+++.+||..||.+|||+.+++.+
T Consensus       229 --~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~l~~~  264 (316)
T cd05108         229 --RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  264 (316)
T ss_pred             --CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence              001122335678899999999999999999999876

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EGFR (HER1, ErbB1) is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphor

>cd05097 PTKc_DDR_like Catalytic domain of Discoidin Domain Receptor-like Protein Tyrosine Kinases

Probab=99.95  E-value=3.8e-28  Score=220.17  Aligned_cols=223  Identities=15%  Similarity=0.097  Sum_probs=163.6

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----------   93 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----------   93 (358)
                      .+|+|......+...+..+.++.+...+.  .+.+++....... .....|+||||+.|++|.+++....          
T Consensus        46 ~vavK~~~~~~~~~~~~~~~~ei~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  122 (295)
T cd05097          46 LVAVKMLRADVTKTARNDFLKEIKIMSRL--KNPNIIRLLGVCV-SDDPLCMITEYMENGDLNQFLSQREIESTFTHANN  122 (295)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHHHhC--CCCCcCeEEEEEc-CCCccEEEEecCCCCcHHHHHHhcccccccccccc
Confidence            47899998887777777788887776664  5566666555443 3467899999999999999875322          


Q ss_pred             --ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHH
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEV  162 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~  162 (358)
                        ...+..+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......     .....++..|+|||+
T Consensus       123 ~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~  202 (295)
T cd05097         123 IPSVSIANLLYMAVQIASGMKYLASLNFVHRDLATRNCLVGNHYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMAWES  202 (295)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHhcCeeccccChhhEEEcCCCcEEecccccccccccCcceeccCcCcCceeecChhh
Confidence              24667788899999999999999999998    9999999999999999999654321     122245678999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhc--CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          163 LLGSKYSTSADLWSFACICFELAT--GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      +.+..++.++|||||||++|+|++  |..||...+      ....+..+...+...-.                      
T Consensus       203 ~~~~~~~~~~DvwSlG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~----------------------  254 (295)
T cd05097         203 ILLGKFTTASDVWAFGVTLWEMFTLCKEQPYSLLS------DEQVIENTGEFFRNQGR----------------------  254 (295)
T ss_pred             hccCCcCchhhHHHHHHHHHHHHHcCCCCCCcccC------hHHHHHHHHHhhhhccc----------------------
Confidence            998889999999999999999988  567775433      22222222211100000                      


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                  ......+...+..+.+|+.+||+.||++|||++++++
T Consensus       255 ------------~~~~~~~~~~~~~l~~li~~~l~~~p~~RPs~~~i~~  291 (295)
T cd05097         255 ------------QIYLSQTPLCPSPVFKLMMRCWSRDIKDRPTFNKIHH  291 (295)
T ss_pred             ------------cccCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                        0000112234678999999999999999999999965

Protein Tyrosine Kinase (PTK) family; Discoidin Domain Receptor (DDR)-like proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR-like proteins are members of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDRs regulate cell adhesion, proliferation, and extracellular matrix remodeling. They have been linked to a variety of human cancers including

>cd05583 STKc_MSK_N N-terminal catalytic domain of the Protein Serine/Threonine Kinase, Mitogen and stress-activated kinase

Probab=99.95  E-value=2.8e-28  Score=220.19  Aligned_cols=231  Identities=17%  Similarity=0.174  Sum_probs=166.3

Q ss_pred             ccCcccccccccCccch---hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTK---NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .++..+|+|++......   ...+++.++.+...+. .++++++...... ......|+||||+.||+|.+++.....+.
T Consensus        26 ~~~~~~avk~~~~~~~~~~~~~~~~~~~E~~~l~~~-~~~~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~  103 (288)
T cd05583          26 DAGKLYAMKVLKKATIVQKAKTAEHTRTERQVLEAV-RRCPFLVTLHYAF-QTDTKLHLILDYVNGGELFTHLYQREHFT  103 (288)
T ss_pred             cCCcEEEEEEEehHHHHhhhhHHHHHHHHHHHHHhc-cCCcchhhhheee-ecCCEEEEEEecCCCCcHHHHHhhcCCcC
Confidence            45667888887643221   1223444454444443 2455565555433 33456889999999999999887766778


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC-
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +..+..++.|++.++.++|+.+++|+    .||+++.++.++|+|||++......    .....|+..|+|||.+.+.. 
T Consensus       104 ~~~~~~~~~ql~~~l~~lH~~~~~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  183 (288)
T cd05583         104 ESEVRVYIAEIVLALDHLHQLGIIYRDIKLENILLDSEGHVVLTDFGLSKEFLAEEEERAYSFCGTIEYMAPEVIRGGSG  183 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHeEECCCCCEEEEECccccccccccccccccccCCccccCHHHhcCCCC
Confidence            88899999999999999999999988    8999999999999999998654322    12346889999999988765 


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++||||||+++|+|++|..||.......  ........+.   .                                
T Consensus       184 ~~~~~~Dv~slG~il~el~tg~~p~~~~~~~~--~~~~~~~~~~---~--------------------------------  226 (288)
T cd05583         184 GHDKAVDWWSLGVLTFELLTGASPFTVDGEQN--SQSEISRRIL---K--------------------------------  226 (288)
T ss_pred             CCcchhhhHHHHHHHHHHHhCCCCcccCcccc--hHHHHHHHHH---c--------------------------------
Confidence             7889999999999999999999996332110  0111111110   0                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC---HHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT---AAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t---a~elL~hpwf~~~  296 (358)
                             .....+...+..+.++|.+||+.||++|||   +.++|+||||+..
T Consensus       227 -------~~~~~~~~~~~~l~~li~~~l~~~p~~R~t~~~~~~~l~~~~~~~~  272 (288)
T cd05583         227 -------SKPPFPKTMSAEARDFIQKLLEKDPKKRLGANGADEIKNHPFFQGI  272 (288)
T ss_pred             -------cCCCCCcccCHHHHHHHHHHhcCCHhhccCcchHHHHhcCcccccC
Confidence                   011223334678899999999999999998   5677999999864

Serine/Threonine Kinases (STKs), Mitogen and stress-activated kinase (MSK) subfamily, N-terminal catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MSK subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MSKs contain an N-terminal kinase domain (NTD) from the AGC family and a C-terminal kinase domain (CTD) from the CAMK family, similar to 90 kDa ribosomal protein S6 kinases (RSKs). MSKs are activated by two major signaling cascades, the Ras-MAPK and p38 stress kinase pathways, in response to various stimuli such as growth factors, hormones, neurotransmitters, cellular stress, and pro-inflammatory cytokines

>cd05080 PTKc_Tyk2_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=2.2e-28  Score=220.33  Aligned_cols=235  Identities=14%  Similarity=0.076  Sum_probs=167.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+..+|+|.............+.++.+....  +.|++++....... ......|+||||+++|+|.+++... .+++.
T Consensus        31 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~~-~l~~~  107 (283)
T cd05080          31 GTGEMVAVKTLKRECGQQNTSGWKKEINILKT--LYHENIVKYKGCCSEQGGKGLQLIMEYVPLGSLRDYLPKH-KLNLA  107 (283)
T ss_pred             CCCceEEEEEeccccChHHHHHHHHHHHHHHh--CCCCCEeeEEEEEecCCCceEEEEecCCCCCCHHHHHHHc-CCCHH
Confidence            45667899998877665566777777665555  35666666655432 2345678999999999999988654 47889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.......      ....++..|+|||++.+..+
T Consensus       108 ~~~~i~~~l~~~l~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~  187 (283)
T cd05080         108 QLLLFAQQICEGMAYLHSQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAVECLKENKF  187 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeccccChheEEEcCCCcEEEeecccccccCCcchhhccCCCCCCCceeeCHhHhcccCC
Confidence            999999999999999999999998    99999999999999999997654321      12245667999999998889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||......           +.+.........     .          .........   
T Consensus       188 ~~~~Di~slG~~l~el~tg~~p~~~~~~~-----------~~~~~~~~~~~~-----~----------~~~~~~~~~---  238 (283)
T cd05080         188 SYASDVWSFGVTLYELLTHCDSKQSPPKK-----------FEEMIGPKQGQM-----T----------VVRLIELLE---  238 (283)
T ss_pred             CcccccHHHHHHHHHHHhCCCCCCCCcch-----------hhhhhccccccc-----c----------hhhhhhhhh---
Confidence            99999999999999999999998533210           000000000000     0          000000000   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                         .......+...+..+.+|+.+||+.||++|||++++++
T Consensus       239 ---~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~i~~  276 (283)
T cd05080         239 ---RGMRLPCPKNCPQEVYILMKNCWETEAKFRPTFRSLIP  276 (283)
T ss_pred             ---cCCCCCCCCCCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence               00011223445678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as the phosphorylation of sign

>cd05058 PTKc_Met_Ron Catalytic domain of the Protein Tyrosine Kinases, Met and Ron

Probab=99.95  E-value=4.5e-28  Score=215.66  Aligned_cols=219  Identities=16%  Similarity=0.102  Sum_probs=158.9

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      +..+|+|.+...........+.++......  ..|++++.........++..++||||+.+|+|.+++... .......+
T Consensus        23 ~~~~aiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  100 (262)
T cd05058          23 KIHCAVKSLNRITDLEEVEQFLKEGIIMKD--FSHPNVLSLLGICLPSEGSPLVVLPYMKHGDLRNFIRSETHNPTVKDL  100 (262)
T ss_pred             eEEEEEEecCccCCHHHHHHHHHHHHHHcc--CCCCCcceEEEEeecCCCCcEEEEecCCCCCHHHHHHhcCCCCCHHHH
Confidence            346788887654444445566666554444  467777766654444556789999999999999988653 33455667


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCCCC
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......       .....++..|+|||.+.+..++
T Consensus       101 ~~~~~~i~~~l~~lH~~~i~H~dlk~~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  180 (262)
T cd05058         101 IGFGLQVAKGMEYLASKKFVHRDLAARNCMLDESFTVKVADFGLARDIYDKEYYSVHNHTGAKLPVKWMALESLQTQKFT  180 (262)
T ss_pred             HHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCccccccccCCcceeecccccCcCCccccChhHhccCccc
Confidence            7888999999999999999998    9999999999999999999654321       1123457789999999988899


Q ss_pred             cchhhhhhhHHHHhhhcC-CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELATG-DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++| .+||...+      .......+   ....                                
T Consensus       181 ~~~Di~slG~~l~el~~~~~~~~~~~~------~~~~~~~~---~~~~--------------------------------  219 (262)
T cd05058         181 TKSDVWSFGVLLWELMTRGAPPYPDVD------SFDITVYL---LQGR--------------------------------  219 (262)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHH---hcCC--------------------------------
Confidence            999999999999999995 56664322      11111111   0000                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+++.+||..+|++|||+.++++
T Consensus       220 ------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~il~  254 (262)
T cd05058         220 ------RLLQPEYCPDPLYEVMLSCWHPKPEMRPTFSELVS  254 (262)
T ss_pred             ------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                  00112223567889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Met and Ron; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Met and Ron are receptor tyr kinases (RTKs) composed of an alpha-beta heterodimer. The extracellular alpha chain is disulfide linked to the beta chain, which contains an extracellular ligand-binding region with a sema domain, a PSI domain and four IPT repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Met binds to the ligand, hepatocyte growth factor/scatter factor (HGF/SF), and is also ca

>cd05090 PTKc_Ror1 Catalytic domain of the Protein Tyrosine Kinase, Receptor tyrosine kinase-like Orphan Receptor 1

Probab=99.95  E-value=3.7e-28  Score=218.81  Aligned_cols=220  Identities=13%  Similarity=0.101  Sum_probs=164.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      .+..+++|.+...........+.++.......  .+++++....... .....|+||||+.+|+|.+++...        
T Consensus        33 ~~~~~~ik~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  109 (283)
T cd05090          33 HAQLVAIKTLKDINNPQQWGEFQQEASLMAEL--HHPNIVCLLGVVT-QEQPVCMLFEYLNQGDLHEFLIMRSPHSDVGC  109 (283)
T ss_pred             CcceEEEEeccCCCCHHHHHHHHHHHHHHhhC--CCCCeeeEEEEEe-cCCceEEEEEcCCCCcHHHHHHhcCCCCcccc
Confidence            45677888888766555556777777666653  5666666554432 345689999999999999987421        


Q ss_pred             ---------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           93 ---------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        93 ---------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                               ..+.+.++..++.+++.++.|+|+.+++|+    +|||+++++.+||+|||++......     .....++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  189 (283)
T cd05090         110 SSDEDGTVKSSLDHGDFLHIAIQIAAGMEYLSSHFFVHKDLAARNILIGEQLHVKISDLGLSREIYSADYYRVQPKSLLP  189 (283)
T ss_pred             ccccccccccccCHHHHHHHHHHHHHHHHHHHhcCeehhccccceEEEcCCCcEEeccccccccccCCcceecccCCCcc
Confidence                     235667788899999999999999999999    9999999999999999999754321     2233557


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      ..|+|||++.+..++.++|||||||++|+|++ |..||.+.+      .......+. ...                   
T Consensus       190 ~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~g~~p~~~~~------~~~~~~~~~-~~~-------------------  243 (283)
T cd05090         190 IRWMPPEAIMYGKFSSDSDIWSFGVVLWEIFSFGLQPYYGFS------NQEVIEMVR-KRQ-------------------  243 (283)
T ss_pred             ceecChHHhccCCCCchhhhHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHH-cCC-------------------
Confidence            78999999998889999999999999999998 999996543      111111111 000                   


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ....+..++..+.+++.+||+.||++||++.+++++
T Consensus       244 ---------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~~  279 (283)
T cd05090         244 ---------------------LLPCSEDCPPRMYSLMTECWQEGPSRRPRFKDIHTR  279 (283)
T ss_pred             ---------------------cCCCCCCCCHHHHHHHHHHcccCcccCcCHHHHHHH
Confidence                                 011223346788999999999999999999999875

Protein Tyrosine Kinase (PTK) family; Receptor tyrosine kinase-like Orphan Receptor 1 (Ror1); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ror proteins are orphan receptor tyr kinases (RTKs) containing an extracellular region with immunoglobulin-like, cysteine-rich, and kringle domains, a transmembrane segment, and an intracellular catalytic domain. Ror RTKs are unrelated to the nuclear receptor subfamily called retinoid-related orphan receptors (RORs). RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase cataly

>cd06607 STKc_TAO Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids proteins

Probab=99.95  E-value=2.4e-28  Score=222.74  Aligned_cols=226  Identities=18%  Similarity=0.190  Sum_probs=163.5

Q ss_pred             ccCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           20 ESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .+|..+++|.....  ......+.+.++.+....  ..|++++....... .....|+||||+.| ++.+++. ....+.
T Consensus        38 ~~~~~v~iK~~~~~~~~~~~~~~~~~~Ei~~l~~--l~h~niv~~~~~~~-~~~~~~lv~e~~~g-~l~~~~~~~~~~l~  113 (307)
T cd06607          38 RTNEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQQ--LRHPNTIEYKGCYL-REHTAWLVMEYCLG-SASDILEVHKKPLQ  113 (307)
T ss_pred             CCCcEEEEEEEeccccCcHHHHHHHHHHHHHHHh--CCCCCEEEEEEEEE-eCCeEEEEHHhhCC-CHHHHHHHcccCCC
Confidence            35678888877543  333344566666655554  35666666554433 34568999999985 4544443 334578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC---CCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG---SKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~---~~~~  169 (358)
                      +.++..++.+++.++.|+|+.+++|+    +||+++.++.+||+|||++...... ....+++.|+|||++.+   ..++
T Consensus       114 ~~~~~~~~~ql~~~L~~LH~~~i~H~dl~p~nIl~~~~~~~kL~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~  192 (307)
T cd06607         114 EVEIAAICHGALQGLAYLHSHERIHRDIKAGNILLTEPGTVKLADFGSASLVSPA-NSFVGTPYWMAPEVILAMDEGQYD  192 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEECCCCCEEEeecCcceecCCC-CCccCCccccCceeeeccCCCCCC
Confidence            88999999999999999999999988    9999999999999999998765432 34578899999999853   4588


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||....      ....+..   +....+.                               
T Consensus       193 ~~sDv~s~G~il~el~tg~~p~~~~~------~~~~~~~---~~~~~~~-------------------------------  232 (307)
T cd06607         193 GKVDVWSLGITCIELAERKPPLFNMN------AMSALYH---IAQNDSP-------------------------------  232 (307)
T ss_pred             cccchHHHHHHHHHHHcCCCCCCCcc------HHHHHHH---HhcCCCC-------------------------------
Confidence            99999999999999999999996432      1111111   1100000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            .......+..+.+||.+||..||++|||+.+++.||||...
T Consensus       233 ------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~~~~  273 (307)
T cd06607         233 ------TLSSNDWSDYFRNFVDSCLQKIPQDRPSSEELLKHRFVLRE  273 (307)
T ss_pred             ------CCCchhhCHHHHHHHHHHhcCChhhCcCHHHHhcChhhccc
Confidence                  00011235678999999999999999999999999999864

Serine/threonine kinases (STKs), thousand-and-one amino acids (TAO) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. They activate the MAPKs, p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activating the respective MAP/ERK kinases (MEKs, also known as MKKs or MAPKKs), MEK3/MEK6 and MKK4/MKK7. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Vertebrates contain three TAO subfamily

>cd05093 PTKc_TrkB Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase B

Probab=99.95  E-value=3.2e-28  Score=219.90  Aligned_cols=216  Identities=15%  Similarity=0.146  Sum_probs=160.8

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc---------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV---------   93 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~---------   93 (358)
                      ..+++|.+... +......+.++.....+.  .+++++....... .....|+||||+++|+|.+++....         
T Consensus        36 ~~~~ik~~~~~-~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~  111 (288)
T cd05093          36 ILVAVKTLKDA-SDNARKDFHREAELLTNL--QHEHIVKFYGVCV-EGDPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEG  111 (288)
T ss_pred             eEEEEEecCCc-CHHHHHHHHHHHHHHHhC--CCCCcceEEEEEe-cCCccEEEEEcCCCCCHHHHHHHcCCcccccccc
Confidence            34677777643 344456677776666553  5666666655433 3567899999999999999876332         


Q ss_pred             ----ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           94 ----VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        94 ----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                          .+++.++..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......     .....++..|+||
T Consensus       112 ~~~~~l~~~~~~~~~~ql~~aL~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  191 (288)
T cd05093         112 NRPAELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRWMPP  191 (288)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEeccCCccccccCCceeecCCCCCccccccCH
Confidence                37788999999999999999999999999    9999999999999999999754322     1233457789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |.+||....      ....+..+..  +..                       
T Consensus       192 E~~~~~~~~~~sDiwslG~il~~l~t~g~~p~~~~~------~~~~~~~i~~--~~~-----------------------  240 (288)
T cd05093         192 ESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIECITQ--GRV-----------------------  240 (288)
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CCc-----------------------
Confidence            99998889999999999999999998 899986443      1222222111  000                       


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                      ...+...+..+.+|+.+||+.||.+|||+.+++.
T Consensus       241 ----------------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~v~~  274 (288)
T cd05093         241 ----------------LQRPRTCPKEVYDLMLGCWQREPHMRLNIKEIHS  274 (288)
T ss_pred             ----------------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                            0112233567899999999999999999999854

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase B (TrkB); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkB is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkB to its ligands, brain-derived neurotrophic factor (BDNF) or neurotrophin 4 (NT4), results in receptor oligomerization and activation of the catalytic domain. TrkB is broadly

>cd05055 PTKc_PDGFR Catalytic domain of the Protein Tyrosine Kinases, Platelet Derived Growth Factor Receptors

Probab=99.95  E-value=4e-28  Score=220.81  Aligned_cols=220  Identities=15%  Similarity=0.143  Sum_probs=164.5

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccChhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNESS   99 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~~~   99 (358)
                      +..+|+|.+...........++++.+...+. ..|++++....... ..+..|+||||+.||+|.+++...  ..+.+.+
T Consensus        65 ~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~l~~~~  142 (302)
T cd05055          65 VMKVAVKMLKPTAHSSEREALMSELKIMSHL-GNHENIVNLLGACT-IGGPILVITEYCCYGDLLNFLRRKRESFLTLED  142 (302)
T ss_pred             eeEEEEEecCccCChHHHHHHHHHHHHHHhc-cCCCCcceEEEEEe-cCCceEEEEEcCCCCcHHHHHHhCCCCCCCHHH
Confidence            3467888877665555666777777766554 25677776655433 345689999999999999988643  2378889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.......     ....++..|+|||++.+..++.
T Consensus       143 ~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  222 (302)
T cd05055         143 LLSFSYQVAKGMAFLASKNCIHRDLAARNVLLTHGKIVKICDFGLARDIMNDSNYVVKGNARLPVKWMAPESIFNCVYTF  222 (302)
T ss_pred             HHHHHHHHHHHHHHHHHCCeehhhhccceEEEcCCCeEEECCCcccccccCCCceeecCCCCcccccCCHhhhccCCCCc
Confidence            99999999999999999999988    99999999999999999997543221     1234577899999999988999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++||||+||++|+|++ |..||.....      ......... -+.                                  
T Consensus       223 ~~DiwslGvil~el~t~g~~p~~~~~~------~~~~~~~~~-~~~----------------------------------  261 (302)
T cd05055         223 ESDVWSYGILLWEIFSLGSNPYPGMPV------DSKFYKLIK-EGY----------------------------------  261 (302)
T ss_pred             HhHHHHHHHHHHHHHhCCCCCcCCCCc------hHHHHHHHH-cCC----------------------------------
Confidence            9999999999999998 9999864431      111111100 000                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+...+..+.+|+.+||..+|++|||+.|+++
T Consensus       262 -----~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ell~  296 (302)
T cd05055         262 -----RMAQPEHAPAEIYDIMKTCWDADPLKRPTFKQIVQ  296 (302)
T ss_pred             -----cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                 00112233568899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) subfamily; catalytic (c) domain. The PDGFR subfamily consists of PDGFR alpha, PDGFR beta, KIT, CSF-1R, the mammalian FLT3, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. PDGFR kinase domains are autoinhibited by their juxtamembrane regions containing tyr residues. The binding to their ligands leads to recept

>cd05101 PTKc_FGFR2 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 2

Probab=99.95  E-value=3.2e-28  Score=221.59  Aligned_cols=220  Identities=16%  Similarity=0.178  Sum_probs=164.4

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---------   92 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---------   92 (358)
                      +..+++|.+..........++.++....... ..+++++....... .....|+||||+.+|+|.+++...         
T Consensus        47 ~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  124 (304)
T cd05101          47 AVTVAVKMLKDDATEKDLSDLVSEMEMMKMI-GKHKNIINLLGACT-QDGPLYVIVEYASKGNLREYLRARRPPGMEYSY  124 (304)
T ss_pred             ceeEEeeecccccchHHHHHHHHHHHHHHhh-ccCCCchheeEEEe-cCCceEEEEecCCCCcHHHHHHhcCCccccccc
Confidence            3468899988776666667777776655543 25666666655443 345789999999999999987642         


Q ss_pred             -------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCC
Q 045353           93 -------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQ  156 (358)
Q Consensus        93 -------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~  156 (358)
                             ..++..++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+++.....     .....+++.
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nili~~~~~~kl~D~g~~~~~~~~~~~~~~~~~~~~~~  204 (304)
T cd05101         125 DIARVPDEQMTFKDLVSCTYQVARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDVNNIDYYKKTTNGRLPVK  204 (304)
T ss_pred             ccccCCcccccHHHHHHHHHHHHHHHHHHHHCCeeecccccceEEEcCCCcEEECCCccceecccccccccccCCCCCce
Confidence                   234556788899999999999999999998    9999999999999999999765421     122345678


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |+|||++.+..++.++|||||||++|+|++ |..||.+.+      ..+....+.   ...                   
T Consensus       205 y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~---~~~-------------------  256 (304)
T cd05101         205 WMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLK---EGH-------------------  256 (304)
T ss_pred             eeCchhhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHH---cCC-------------------
Confidence            999999998889999999999999999998 778885432      111111111   000                   


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                         ....+...+..+.+|+.+||..+|.+|||+.++++.
T Consensus       257 -------------------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~e~l~~  292 (304)
T cd05101         257 -------------------RMDKPANCTNELYMMMRDCWHAIPSHRPTFKQLVED  292 (304)
T ss_pred             -------------------cCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHH
Confidence                               001123346788999999999999999999999874

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 2 (FGFR2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR2 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd05109 PTKc_HER2 Catalytic domain of the Protein Tyrosine Kinase, HER2

Probab=99.95  E-value=5.2e-28  Score=217.43  Aligned_cols=215  Identities=15%  Similarity=0.119  Sum_probs=161.7

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~  102 (358)
                      .||+|.+....+......+.++......  ..+++++.......  ....+++|||+++|+|.+++.. ...+.+..+..
T Consensus        38 ~va~K~~~~~~~~~~~~~~~~e~~~l~~--~~~~~i~~~~~~~~--~~~~~l~~~~~~~g~l~~~l~~~~~~~~~~~~~~  113 (279)
T cd05109          38 PVAIKVLRENTSPKANKEILDEAYVMAG--VGSPYVCRLLGICL--TSTVQLVTQLMPYGCLLDYVRENKDRIGSQDLLN  113 (279)
T ss_pred             EEEEEEecCCCCHHHHHHHHHHHHHHHh--cCCCCCceEEEEEc--CCCcEEEEEcCCCCCHHHHHhhccCCCCHHHHHH
Confidence            3788988877766666667666655544  35566655544333  2457899999999999998865 44678888999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCcchh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ++.+++.++.|+|+.+++|+    +|||+++++.+||+|||+++......     ....+++.|+|||.+.+..++.++|
T Consensus       114 ~~~qi~~~L~~lH~~~iiH~dlkp~Nil~~~~~~~kL~dfG~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (279)
T cd05109         114 WCVQIAKGMSYLEEVRLVHRDLAARNVLVKSPNHVKITDFGLARLLDIDETEYHADGGKVPIKWMALESILHRRFTHQSD  193 (279)
T ss_pred             HHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCCCceeecccccceeecCCCccchhhCCHHHhccCCCCchhH
Confidence            99999999999999999999    99999999999999999997654221     1223467899999999888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|+|++ |..||....       ...+.........                                     
T Consensus       194 i~slG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~-------------------------------------  229 (279)
T cd05109         194 VWSYGVTVWELMTFGAKPYDGIP-------AREIPDLLEKGER-------------------------------------  229 (279)
T ss_pred             HHHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHCCCc-------------------------------------
Confidence            9999999999998 889986432       1111111111000                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                         ...+...+..+.+++.+||..||++|||+.+++.
T Consensus       230 ---~~~~~~~~~~~~~li~~~l~~dp~~Rp~~~~l~~  263 (279)
T cd05109         230 ---LPQPPICTIDVYMIMVKCWMIDSECRPRFRELVD  263 (279)
T ss_pred             ---CCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence               0112234567889999999999999999999984

Protein Tyrosine Kinase (PTK) family; HER2 (ErbB2, HER2/neu); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER2 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve

>cd05052 PTKc_Abl Catalytic domain of the Protein Tyrosine Kinase, Abelson kinase

Probab=99.95  E-value=5.2e-28  Score=215.53  Aligned_cols=218  Identities=16%  Similarity=0.169  Sum_probs=161.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      .++..+++|.+.....  ....+.++.+....  ..+++++....... .+..+++||||+.+|+|.+++...  ..+.+
T Consensus        29 ~~~~~~~~K~~~~~~~--~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~l~~  103 (263)
T cd05052          29 KYSLTVAVKTLKEDTM--EVEEFLKEAAVMKE--IKHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVNA  103 (263)
T ss_pred             cCCceEEEEEecCCch--HHHHHHHHHHHHHh--CCCCChhheEEEEc-CCCCcEEEEEeCCCCcHHHHHHhCCCCCCCH
Confidence            4567788888765422  22345555555544  35666666665433 345789999999999999988643  34677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC----CCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT----NDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~----~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++........    ...++..|+|||.+.+..++
T Consensus       104 ~~~~~~~~ql~~~l~~lH~~~i~H~dlkp~nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  183 (263)
T cd05052         104 VVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS  183 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCcEEeCCCccccccccceeeccCCCCCccccCCHHHhccCCCC
Confidence            8888999999999999999999998    999999999999999999976543211    12345679999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||.+..      ..+....+..   ..                                
T Consensus       184 ~~~Dv~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------  222 (263)
T cd05052         184 IKSDVWAFGVLLWEIATYGMSPYPGID------LSQVYELLEK---GY--------------------------------  222 (263)
T ss_pred             chhHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHC---CC--------------------------------
Confidence            99999999999999998 999986543      1111111110   00                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.++|.+||..||++|||+.++++
T Consensus       223 ------~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~l~~  257 (263)
T cd05052         223 ------RMERPEGCPPKVYELMRACWQWNPSDRPSFAEIHQ  257 (263)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                  01223344678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Abelson (Abl) kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Abl (or c-Abl) is a ubiquitously-expressed cytoplasmic (or nonreceptor) tyr kinase that contains SH3, SH2, and tyr kinase domains in its N-terminal region, as well as nuclear localization motifs, a putative DNA-binding domain, and F- and G-actin binding domains in its C-terminal tail. It also contains a short autoinhibitory cap region in its N-terminus. Abl is normally inactive and requires phosphorylation and myristoylation for activation. Abl function depends on its subcellular localization. In the cytoplasm, Abl plays

>KOG0670 consensus U4/U6-associated splicing factor PRP4 [RNA processing and modification]

Probab=99.95  E-value=2.2e-29  Score=228.81  Aligned_cols=268  Identities=23%  Similarity=0.322  Sum_probs=186.4

Q ss_pred             cccCcccccccccCc--cchhhhHHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccCCCCCccccccc---c
Q 045353           19 TESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND---S   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~---~   92 (358)
                      +..|+-||||...-.  +-..-.+.+ .-.++....- -.....++++....- ...+++|.|-+. -.|.+.+..   .
T Consensus       454 ~~r~~~vAiKIIRnNE~M~KtGl~El-eiLkKL~~AD~Edk~Hclrl~r~F~h-knHLClVFE~Ls-lNLRevLKKyG~n  530 (752)
T KOG0670|consen  454 QARGQEVAIKIIRNNEVMHKTGLKEL-EILKKLNDADPEDKFHCLRLFRHFKH-KNHLCLVFEPLS-LNLREVLKKYGRN  530 (752)
T ss_pred             cCCCCeeEEEEeecchHHhhhhhHHH-HHHHHhhccCchhhhHHHHHHHHhhh-cceeEEEehhhh-chHHHHHHHhCcc
Confidence            566778899988652  222222222 2222222110 111134444444332 356778888554 345665553   3


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecC-CCCCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTH-KQFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~-~~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +.+...-+..+..|+.-++..|-.-+++|-    +|||++.. ..+||||||.|.... +..+.+.-+.+|+|||+++|.
T Consensus       531 vGL~ikaVRsYaqQLflALklLK~c~vlHaDIKPDNiLVNE~k~iLKLCDfGSA~~~~eneitPYLVSRFYRaPEIiLG~  610 (752)
T KOG0670|consen  531 VGLHIKAVRSYAQQLFLALKLLKKCGVLHADIKPDNILVNESKNILKLCDFGSASFASENEITPYLVSRFYRAPEIILGL  610 (752)
T ss_pred             cceeehHHHHHHHHHHHHHHHHHhcCeeecccCccceEeccCcceeeeccCccccccccccccHHHHHHhccCcceeecC
Confidence            445555667778888888887777777655    89999976 567999999997665 456777788999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc--
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR--  244 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~--  244 (358)
                      +|++..|+||+||+||||+||+..|+|.+      ..++|..++++-|.+|..+...+.+....|+....+-+...-.  
T Consensus       611 ~yd~~iD~WSvgctLYElYtGkIlFpG~T------NN~MLrl~me~KGk~p~KmlRKgqF~dqHFD~d~nf~~~e~D~vT  684 (752)
T KOG0670|consen  611 PYDYPIDTWSVGCTLYELYTGKILFPGRT------NNQMLRLFMELKGKFPNKMLRKGQFKDQHFDQDLNFLYIEVDKVT  684 (752)
T ss_pred             cccCCccceeeceeeEEeeccceecCCCC------cHHHHHHHHHhcCCCcHHHhhhcchhhhhcccccceEEEeccccc
Confidence            99999999999999999999999999887      6789999999999999999999888887777655543221110  


Q ss_pred             ----------CCc---chhhHHhhhcCC---hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 ----------FWP---MNKVLVEKYDFN---ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ----------~~~---~~~~~~~~~~~~---~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                ..|   +...+...-.++   ...-..|.+||.+||..||++|+|+.|+|+||||+.
T Consensus       685 ~r~~~~vm~~vkPtkdl~s~l~~~q~~~deq~~~~~~~rdLLdkml~LdP~KRit~nqAL~HpFi~~  751 (752)
T KOG0670|consen  685 EREKRTVMVNVKPTKDLGSELIAVQRLPDEQPKIVQQLRDLLDKMLILDPEKRITVNQALKHPFITE  751 (752)
T ss_pred             cceeEEEecccCcchhHHHHHhccCCCCchhHHHHHHHHHHHHHHhccChhhcCCHHHHhcCCcccC
Confidence                      011   111111111122   234578999999999999999999999999999975

>cd05033 PTKc_EphR Catalytic domain of Ephrin Receptor Protein Tyrosine Kinases

Probab=99.95  E-value=4.4e-28  Score=216.34  Aligned_cols=219  Identities=16%  Similarity=0.209  Sum_probs=166.9

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      ...+|+|.+........+..+.++.....+.  .+++++....... .....|+||||++||+|.+++... ..+++.++
T Consensus        32 ~~~vaik~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~~  108 (266)
T cd05033          32 EIDVAIKTLKAGSSDKQRLDFLTEASIMGQF--DHPNIIRLEGVVT-KSRPVMIITEYMENGSLDKFLRENDGKFTVGQL  108 (266)
T ss_pred             cceEEEEEcCCCCChHHHHHHHHHHHHHHhC--CCCCcceEeEEEe-cCCceEEEEEcCCCCCHHHHHHhccCCCCHHHH
Confidence            4568999988877777777787777666553  5666666555433 345689999999999999988653 46788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CC--CCccCCCcchhHHHhCCCCCcc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FT--NDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~--~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   ..  ...++..|+|||.+.+..++.+
T Consensus       109 ~~~~~~l~~~l~~Lh~~~i~H~di~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~  188 (266)
T cd05033         109 VGMLRGIASGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRRLEDSEATYTTKGGKIPIRWTAPEAIAYRKFTSA  188 (266)
T ss_pred             HHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCCEEECccchhhcccccccceeccCCCCCccccChhhhccCCCccc
Confidence            9999999999999999999998    9999999999999999999765421   11  1234678999999998889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||....      .......+....                                     
T Consensus       189 ~Dv~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~~~-------------------------------------  225 (266)
T cd05033         189 SDVWSFGIVMWEVMSYGERPYWDMS------NQDVIKAVEDGY-------------------------------------  225 (266)
T ss_pred             cchHHHHHHHHHHHccCCCCCCCCC------HHHHHHHHHcCC-------------------------------------
Confidence            999999999999997 999985332      122221111100                                     


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                          ....+...+..+.+|+.+||+.+|++|||+.+++++
T Consensus       226 ----~~~~~~~~~~~l~~li~~cl~~~p~~Rp~~~ei~~~  261 (266)
T cd05033         226 ----RLPPPMDCPSALYQLMLDCWQKDRNERPTFSQIVST  261 (266)
T ss_pred             ----CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                001122346778999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). They can be classified into two classes (EphA and EphB), according to their extracellular sequences, which largely correspond to binding preferences for either GPI-anchored ephrin-A ligands or transmembrane ephrin-B ligands. Vertebrates have ten EphA and six EhpB receptors, which display promiscuous ligand interactions within each class. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment

>cd05071 PTKc_Src Catalytic domain of the Protein Tyrosine Kinase, Src

Probab=99.95  E-value=7.9e-28  Score=214.33  Aligned_cols=217  Identities=18%  Similarity=0.198  Sum_probs=160.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      .....+++|.+.....  ...+++++.+....  ..+.+++......  .....|+||||+.||+|.+++...  ..+++
T Consensus        28 ~~~~~valK~~~~~~~--~~~~~~~E~~~l~~--l~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  101 (262)
T cd05071          28 NGTTRVAIKTLKPGTM--SPEAFLQEAQVMKK--LRHEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGEMGKYLRL  101 (262)
T ss_pred             cCCceEEEEecccCcc--CHHHHHHHHHHHHh--CCCCCcceEEEEE--CCCCcEEEEEcCCCCcHHHHHhhccccCCCH
Confidence            3344688888876333  23456666655554  3566666655433  235579999999999999988653  34677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC----CCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF----TNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~----~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +|||+++++.+||+|||.+.......    ....++..|+|||++.+..++
T Consensus       102 ~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~Nill~~~~~~~L~dfg~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  181 (262)
T cd05071         102 PQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT  181 (262)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccCcccEEEcCCCcEEeccCCceeeccccccccccCCcccceecCHhHhccCCCC
Confidence            8889999999999999999999998    99999999999999999997654321    123456789999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||.+..      .......+..   ..                                
T Consensus       182 ~~~DvwslG~~l~ellt~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------  220 (262)
T cd05071         182 IKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVER---GY--------------------------------  220 (262)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCCCC------hHHHHHHHhc---CC--------------------------------
Confidence            99999999999999999 888886433      1222221110   00                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+|+.+||+.||++|||+.++++
T Consensus       221 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~~~~  255 (262)
T cd05071         221 ------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQA  255 (262)
T ss_pred             ------CCCCccccCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                  00112234667889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) is a cytoplasmic (or non-receptor) tyr kinase, containing an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region with a conserved tyr. It is activated by autophosphorylation at the tyr kinase domain, and is negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). c-Src is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is invo

>cd06618 PKc_MKK7 Catalytic domain of the dual-specificity Protein Kinase, MAP kinase kinase 7

Probab=99.95  E-value=4e-28  Score=220.15  Aligned_cols=228  Identities=18%  Similarity=0.197  Sum_probs=163.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      +|..+|+|.+...-.....+.+.++.+..... ..+.+++....... .....|+||||+.+ ++.++... ...+++..
T Consensus        39 ~~~~~avK~~~~~~~~~~~~~~~~e~~~~~~~-~~~~~i~~~~~~~~-~~~~~~~v~e~~~~-~l~~l~~~~~~~l~~~~  115 (296)
T cd06618          39 TGHVMAVKQMRRTGNKEENKRILMDLDVVLKS-HDCPYIVKCYGYFI-TDSDVFICMELMST-CLDKLLKRIQGPIPEDI  115 (296)
T ss_pred             CCeEEEEEEEeccCChHHHHHHHHHHHHHHhc-cCCCchHhhheeee-cCCeEEEEeeccCc-CHHHHHHHhcCCCCHHH
Confidence            37788999987655444555555555443332 35666666665443 35678999999865 56655543 34567788


Q ss_pred             hhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC----C
Q 045353          100 RDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK----Y  168 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~----~  168 (358)
                      +..++.+++.++.|+|+ .+++|+    +||++++++.+||+|||++......  .....++..|+|||.+.+..    +
T Consensus       116 ~~~i~~~i~~~l~~lH~~~~i~H~dl~p~nill~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  195 (296)
T cd06618         116 LGKMTVAIVKALHYLKEKHGVIHRDVKPSNILLDASGNVKLCDFGISGRLVDSKAKTRSAGCAAYMAPERIDPPDPNPKY  195 (296)
T ss_pred             HHHHHHHHHHHHHHHHhhCCEecCCCcHHHEEEcCCCCEEECccccchhccCCCcccCCCCCccccCHhhcCCCCCcccc
Confidence            88999999999999997 589998    9999999999999999998654322  23346788999999997653    7


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|+.||.....     ..+.+.   .++.....                              
T Consensus       196 ~~~~Di~slG~il~el~~g~~p~~~~~~-----~~~~~~---~~~~~~~~------------------------------  237 (296)
T cd06618         196 DIRADVWSLGISLVELATGQFPYKNCKT-----EFEVLT---KILQEEPP------------------------------  237 (296)
T ss_pred             ccchhHHHHHHHHHHHHhCCCCCCcchh-----HHHHHH---HHhcCCCC------------------------------
Confidence            8899999999999999999999963210     111111   11111000                              


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            ........+..+.+||.+||..||.+|||+.++++||||..
T Consensus       238 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rp~~~~il~~~~~~~  278 (296)
T cd06618         238 ------SLPPNEGFSPDFCSFVDLCLTKDHRKRPKYRELLQHPFIRR  278 (296)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhc
Confidence                  00001123567899999999999999999999999999985

Protein kinases (PKs), MAP kinase kinase 7 (MKK7) subfamily, catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The MKK7 subfamily is part of a larger superfamily that includes the catalytic domains of other protein serine/threonine kinases, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. The mitogen-activated protein (MAP) kinase signaling pathways are important mediators of cellular responses to extracellular signals. The pathways involve a triple kinase core cascade comprising the MAP kinase (MAPK), which is phosphorylated and activated by a MAPK kinase (MAPKK or MKK), which itself is phosphorylated and activated by a MAPK kinase kinase (MAPKKK or MKKK). MKK7 is a dual-specificity PK that phosphorylates and activates it

>cd05094 PTKc_TrkC Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase C

Probab=99.95  E-value=4.3e-28  Score=219.42  Aligned_cols=217  Identities=15%  Similarity=0.138  Sum_probs=159.3

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---------   92 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---------   92 (358)
                      +..+++|.+..... ...+.+.++.......  .+.+++....... .....|+||||++|++|.+++...         
T Consensus        35 ~~~~~~k~~~~~~~-~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~  110 (291)
T cd05094          35 KMLVAVKALKDPTL-AARKDFQREAELLTNL--QHEHIVKFYGVCG-DGDPLIMVFEYMKHGDLNKFLRAHGPDAMILVD  110 (291)
T ss_pred             ceeeEEEecCCccH-HHHHHHHHHHHHHhcC--CCCCcceEEEEEc-cCCceEEEEecCCCCcHHHHHHhcCcccccccc
Confidence            34467777654433 2334566666655553  4566666555443 345689999999999999988643         


Q ss_pred             -------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCC
Q 045353           93 -------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQ  156 (358)
Q Consensus        93 -------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~  156 (358)
                             ..+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....++..
T Consensus       111 ~~~~~~~~~~~~~~~~~i~~~i~~al~~lH~~~i~H~dlkp~Nil~~~~~~~~l~dfg~a~~~~~~~~~~~~~~~~~~~~  190 (291)
T cd05094         111 GQPRQAKGELGLSQMLHIASQIASGMVYLASQHFVHRDLATRNCLVGANLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIR  190 (291)
T ss_pred             cccccCcCCCCHHHHHHHHHHHHHHHHHHHhCCeeecccCcceEEEccCCcEEECCCCcccccCCCceeecCCCCCccee
Confidence                   236778899999999999999999999998    9999999999999999999654321     233456889


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |+|||++.+..++.++|||||||++|+|++ |..||....      ....+..+..  +..                   
T Consensus       191 y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~--~~~-------------------  243 (291)
T cd05094         191 WMPPESIMYRKFTTESDVWSFGVILWEIFTYGKQPWFQLS------NTEVIECITQ--GRV-------------------  243 (291)
T ss_pred             ecChHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhC--CCC-------------------
Confidence            999999999889999999999999999998 999986433      1121111110  000                   


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                          ...+...+..+.+|+.+||+.||++|||+.++++
T Consensus       244 --------------------~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~v~~  277 (291)
T cd05094         244 --------------------LERPRVCPKEVYDIMLGCWQREPQQRLNIKEIYK  277 (291)
T ss_pred             --------------------CCCCccCCHHHHHHHHHHcccChhhCcCHHHHHH
Confidence                                0111223567899999999999999999999865

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase C (TrkC); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkC is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkC to its ligand, neurotrophin 3 (NT3), results in receptor oligomerization and activation of the catalytic domain. TrkC is broadly expressed in the nervous system and in some n

>cd05035 PTKc_Axl_like Catalytic Domain of Axl-like Protein Tyrosine Kinases

Probab=99.95  E-value=6.5e-28  Score=215.74  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=160.1

Q ss_pred             CcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccc----
Q 045353           22 SASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQND----   91 (358)
Q Consensus        22 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~----   91 (358)
                      +..+|+|.+..+. +......+.++.+....  ..+++++........     .....++||||+.+|+|..++..    
T Consensus        27 ~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~l~~~~~~  104 (273)
T cd05035          27 QLKVAVKTMKLDIHTYSEIEEFLSEAACMKD--FDHPNVMKLIGVCFEASSLQKIPKPMVILPFMKHGDLHSFLLYSRLG  104 (273)
T ss_pred             cceEEEEEeccCcCCHHHHHHHHHHHHHHHh--CCCCCeeeEEeeeccCCccccCcccEEEEeccCCCCHHHHHHHhhcc
Confidence            4568888877543 33334556666655444  356666665543322     22457899999999999887632    


Q ss_pred             --ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchh
Q 045353           92 --SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCP  160 (358)
Q Consensus        92 --~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aP  160 (358)
                        ...+++..+..++.+++.++.|+|+.+++|+    +||++++++.+||+|||+++......     ....++..|+||
T Consensus       105 ~~~~~~~~~~~~~~~~~i~~aL~~lH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~p  184 (273)
T cd05035         105 GLPEKLPLQTLLKFMVDIALGMEYLSNRNFIHRDLAARNCMLREDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAI  184 (273)
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchheEEECCCCeEEECCccceeeccccccccccccccCCccccCH
Confidence              2356778889999999999999999999998    99999999999999999997654321     112346789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |.+||.+..      .......+.   ...                       
T Consensus       185 e~~~~~~~~~~~Dv~SlG~il~el~~~g~~p~~~~~------~~~~~~~~~---~~~-----------------------  232 (273)
T cd05035         185 ESLADRVYTSKSDVWAFGVTMWEIATRGQTPYPGVE------NHEIYDYLR---HGN-----------------------  232 (273)
T ss_pred             hhcccCCCCcccchHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHH---cCC-----------------------
Confidence            99988889999999999999999999 889986433      112111111   000                       


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                     ....+...+..+.+++.+||+.||.+|||+.|++++
T Consensus       233 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~e~~~~  268 (273)
T cd05035         233 ---------------RLKQPEDCLDELYDLMYSCWRADPKDRPTFTKLREV  268 (273)
T ss_pred             ---------------CCCCCcCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                           011223446789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl subfamily; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). The Axl subfamily consists of Axl, Tyro3 (or Sky), Mer (or Mertk), and similar proteins. PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl subfamily members are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl subfamily members are implicated in a variety of cellu

>cd05070 PTKc_Fyn_Yrk Catalytic domain of the Protein Tyrosine Kinases, Fyn and Yrk

Probab=99.95  E-value=6.8e-28  Score=214.37  Aligned_cols=218  Identities=17%  Similarity=0.198  Sum_probs=161.1

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .+.+..+++|.+.....  ....+.++......  +.+++++......  .....|+||||+.|++|.+++...  ..++
T Consensus        27 ~~~~~~~~~k~~~~~~~--~~~~~~~E~~~l~~--l~~~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  100 (260)
T cd05070          27 WNGNTKVAVKTLKPGTM--SPESFLEEAQIMKK--LRHDKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKDGEGRALK  100 (260)
T ss_pred             ecCCceeEEEEecCCCC--CHHHHHHHHHHHHh--cCCCceEEEEeEE--CCCCcEEEEEecCCCcHHHHHHhcCCCCCC
Confidence            34556788888876433  23456666655554  3566666555443  245689999999999999988642  3467


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC----CCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF----TNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~----~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +.++..++.+++.++.++|+.+++|+    +||++++++.++|+|||++.......    ....++..|+|||++.+..+
T Consensus       101 ~~~~~~~~~~l~~al~~lH~~~i~H~di~p~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  180 (260)
T cd05070         101 LPNLVDMAAQVAAGMAYIERMNYIHRDLRSANILVGDGLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  180 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCccceEEEeCCceEEeCCceeeeeccCcccccccCCCCCccccChHHHhcCCC
Confidence            88899999999999999999999999    99999999999999999997654321    12245568999999988889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |.+||.+.+      ..+....+..   ..                               
T Consensus       181 ~~~~Di~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~---~~-------------------------------  220 (260)
T cd05070         181 TIKSDVWSFGILLTELVTKGRVPYPGMN------NREVLEQVER---GY-------------------------------  220 (260)
T ss_pred             cchhhhHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc---CC-------------------------------
Confidence            999999999999999999 889996433      2222222211   00                               


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+..+.+|+.+||..||++|||+.++++
T Consensus       221 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~l~~  255 (260)
T cd05070         221 -------RMPCPQDCPISLHELMLQCWKKDPEERPTFEYLQS  255 (260)
T ss_pred             -------CCCCCCcCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                   01122334678999999999999999999999863

Protein Tyrosine Kinase (PTK) family; Fyn and Yrk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fyn and Yrk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that r

>cd05043 PTK_Ryk Pseudokinase domain of Ryk (Receptor related to tyrosine kinase)

Probab=99.95  E-value=5.7e-28  Score=217.22  Aligned_cols=219  Identities=13%  Similarity=0.116  Sum_probs=167.7

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------c
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------V   93 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------~   93 (358)
                      +..|++|.+.......+...+.++......  +.|++++.............++++||+.+|+|.+++...        .
T Consensus        35 ~~~v~~k~~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~  112 (280)
T cd05043          35 EEEVFVKTVKDHASEIQVTLLLQESCLLYG--LSHQNILPILHVCIEDGEPPFVLYPYMNWGNLKLFLQQCRLGEANNPQ  112 (280)
T ss_pred             eeEEEEEEccCCCCHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEecCCCCCEEEEEcCCCCcHHHHHHhcccccccccc
Confidence            567889998877777777777777766555  367777776655444456789999999999999987643        3


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~  164 (358)
                      .+.+.++..++.+++.|+.|+|+.+++|+    +|||+++++.+||+|||+++.....     .....++..|+|||++.
T Consensus       113 ~l~~~~~~~i~~~i~~~l~~LH~~~i~H~di~p~nil~~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~y~apE~~~  192 (280)
T cd05043         113 ALSTQQLVHMAIQIACGMSYLHKRGVIHKDIAARNCVIDEELQVKITDNALSRDLFPMDYHCLGDNENRPVKWMALESLV  192 (280)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCEeecccCHhhEEEcCCCcEEECCCCCcccccCCceEEeCCCCCcchhccCHHHHh
Confidence            46788889999999999999999999999    9999999999999999999754321     12234567899999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          165 GSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +..++.++|||||||++|++++ |..||....      ..+....+..  +.                            
T Consensus       193 ~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~----------------------------  236 (280)
T cd05043         193 NKEYSSASDVWSFGVLLWELMTLGQTPYVEID------PFEMAAYLKD--GY----------------------------  236 (280)
T ss_pred             cCCCCchhhHHHhHHHHHHHhcCCCCCcCcCC------HHHHHHHHHc--CC----------------------------
Confidence            8889999999999999999998 999996432      1111111110  00                            


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                 ....+..++..+.+++.+||..||++|||+.++++
T Consensus       237 -----------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~~~~  271 (280)
T cd05043         237 -----------RLAQPINCPDELFAVMACCWALDPEERPSFSQLVQ  271 (280)
T ss_pred             -----------CCCCCCcCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence                       00112223567899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Receptor related to tyrosine kinase (Ryk); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Ryk is a receptor tyr kinase (RTK) containing an extracellular region with two leucine-rich motifs, a transmembrane segment, and an intracellular inactive pseudokinase domain. The extracellular region of Ryk shows homology to the N-terminal domain of Wnt inhibitory factor-1 (WIF) and serves as the ligand (Wnt) binding domain of Ryk. Ryk is expressed in many different tissues both during development and in adults, suggesting a widespread function. It

>cd05099 PTKc_FGFR4 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 4

Probab=99.95  E-value=7.6e-28  Score=220.18  Aligned_cols=219  Identities=17%  Similarity=0.195  Sum_probs=161.3

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---------   92 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---------   92 (358)
                      +..+++|.+..........++.++.+...+. ..+++++....... .....|+||||+.+|+|.+++...         
T Consensus        44 ~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~i~~~~~~~~~~~~  121 (314)
T cd05099          44 TVTVAVKMLKDNATDKDLADLISEMELMKLI-GKHKNIINLLGVCT-QEGPLYVIVEYAAKGNLREFLRARRPPGPDYTF  121 (314)
T ss_pred             ceEEEEEecCCCCChHHHHHHHHHHHHHHhc-cCCCCeeeEEEEEc-cCCceEEEEecCCCCcHHHHHHhcCCCcccccc
Confidence            3457888887666555556666666555443 24677776665443 345689999999999999987542         


Q ss_pred             -------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCC
Q 045353           93 -------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQ  156 (358)
Q Consensus        93 -------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~  156 (358)
                             ..+...++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+++.....     .....++..
T Consensus       122 ~~~~~~~~~l~~~~~~~~~~qi~~aL~~lH~~gi~H~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~  201 (314)
T cd05099         122 DITKVPEEQLSFKDLVSCAYQVARGMEYLESRRCIHRDLAARNVLVTEDNVMKIADFGLARGVHDIDYYKKTSNGRLPVK  201 (314)
T ss_pred             cccCCcccccCHHHHHHHHHHHHHHHHHHHHCCeeeccccceeEEEcCCCcEEEccccccccccccccccccccCCCCcc
Confidence                   235667788899999999999999999998    9999999999999999999765321     112234567


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |+|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..  +.                    
T Consensus       202 y~aPE~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~--------------------  253 (314)
T cd05099         202 WMAPEALFDRVYTHQSDVWSFGILMWEIFTLGGSPYPGIP------VEELFKLLRE--GH--------------------  253 (314)
T ss_pred             ccCHHHHccCCcCccchhhHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC--------------------
Confidence            999999998889999999999999999998 888886433      1222211110  00                    


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                         ....+...+.++.+|+.+||..||++|||+.++++
T Consensus       254 -------------------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~ll~  288 (314)
T cd05099         254 -------------------RMDKPSNCTHELYMLMRECWHAVPTQRPTFKQLVE  288 (314)
T ss_pred             -------------------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                               01122334568889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 4 (FGFR4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR4 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd06633 STKc_TAO3 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 3

Probab=99.95  E-value=6.3e-28  Score=220.65  Aligned_cols=227  Identities=19%  Similarity=0.192  Sum_probs=163.2

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccC
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      .+|..+++|.+.....  ......+.++......  +.+.+++....... .....|+||||+.| ++.+++.. ...+.
T Consensus        44 ~~~~~v~ik~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~l~~~~~~l~  119 (313)
T cd06633          44 HTNEVVAVKKMSYSGKQTNEKWQDIIKEVKFLQQ--LKHPNTIEYKGCYL-KEHTAWLVMEYCLG-SASDLLEVHKKPLQ  119 (313)
T ss_pred             CCCcEEEEEEEeccccCchHHHHHHHHHHHHHHh--CCCCCCccEEEEEE-eCCEEEEEEecCCC-CHHHHHHhcCCCCC
Confidence            3566788888765332  2233455565555444  35666665554433 23568999999975 55555543 34577


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHh---CCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLL---GSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~---~~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++..... .....|+..|+|||++.   +..++
T Consensus       120 ~~~~~~~~~qi~~al~~LH~~gi~H~dl~p~nili~~~~~~kL~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~  198 (313)
T cd06633         120 EVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASKSSP-ANSFVGTPYWMAPEVILAMDEGQYD  198 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCChhhEEECCCCCEEEeecCCCcccCC-CCCccccccccChhhccccCCCCCC
Confidence            88899999999999999999999998    999999999999999999865432 34557899999999985   34588


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|.+||....      ....+..+..  ...|.                               
T Consensus       199 ~~sDv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~--~~~~~-------------------------------  239 (313)
T cd06633         199 GKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NDSPT-------------------------------  239 (313)
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHh--cCCCC-------------------------------
Confidence            99999999999999999999986433      1112211110  00000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                             ......+..+.+|+.+||+.+|.+|||+.++++||||+..+
T Consensus       240 -------~~~~~~~~~l~~li~~~l~~~P~~Rp~~~~~l~~~~~~~~~  280 (313)
T cd06633         240 -------LQSNEWTDSFRGFVDYCLQKIPQERPASAELLRHDFVRRDR  280 (313)
T ss_pred             -------CCccccCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCCc
Confidence                   00112245688999999999999999999999999999643

Serine/threonine kinases (STKs), thousand-and-one amino acids 3 (TAO3) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO3 is also known as JIK (JNK inhibitory kinase) or KFC (kinase from chicken). It specifically activates c-Jun N-terminal kinase (JNK), presumably by phosphorylating and activating MKK4/MKK7. In Saccharomyces cerevisiae, TAO3 is a co

>smart00219 TyrKc Tyrosine kinase, catalytic domain

Probab=99.95  E-value=9e-28  Score=212.83  Aligned_cols=218  Identities=17%  Similarity=0.180  Sum_probs=167.9

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc--cChhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV--NNESS   99 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~--~~~~~   99 (358)
                      +..+++|.+....+....+.++.+.......  .+.+++........ ....|++|||+.|++|.+++.....  +.+.+
T Consensus        28 ~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~~~-~~~~~~i~e~~~~~~l~~~~~~~~~~~~~~~~  104 (258)
T smart00219       28 EVEVAVKTLKEDADEQQIEEFLREARIMRKL--DHPNIVKLLGVCTE-EEPLMIVMEYMEGGDLLDYLRKNRPKELSLSD  104 (258)
T ss_pred             CceEEEEEccCCCChHHHHHHHHHHHHHHhc--CCCchheEEEEEcC-CCeeEEEEeccCCCCHHHHHHhhhhccCCHHH
Confidence            4678999998877766777777777666654  56666665554443 3678999999999999998875443  78899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC----CCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT----NDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~----~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.++|+|||++........    ...+++.|+|||.+.+..++.+
T Consensus       105 ~~~~~~ql~~~l~~lh~~~~~h~dl~~~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~  184 (258)
T smart00219      105 LLSFALQIARGMEYLESKNFIHRDLAARNCLVGENLVVKISDFGLSRDLYDDDYYKKKGGKLPIRWMAPESLKDGKFTSK  184 (258)
T ss_pred             HHHHHHHHHHHHHHHhcCCeeecccccceEEEccCCeEEEcccCCceecccccccccccCCCcccccChHHhccCCCCcc
Confidence            99999999999999999999998    999999999999999999976543311    1236789999999987789999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +||||+||++++|++ |.+||....      .......+...  .                                   
T Consensus       185 ~Di~slG~i~~~l~~~g~~p~~~~~------~~~~~~~~~~~--~-----------------------------------  221 (258)
T smart00219      185 SDVWSFGVLLWEIFTLGESPYPGMS------NEEVLEYLKKG--Y-----------------------------------  221 (258)
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhcC--C-----------------------------------
Confidence            999999999999998 788886432      11222111100  0                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                          ....+...+..+.+++.+||..||++|||+.|+++
T Consensus       222 ----~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~ll~  256 (258)
T smart00219      222 ----RLPKPENCPPEIYKLMLQCWAEDPEDRPTFSELVE  256 (258)
T ss_pred             ----CCCCCCcCCHHHHHHHHHHCcCChhhCcCHHHHHh
Confidence                00112234678999999999999999999999986

Phosphotransferases. Tyrosine-specific kinase subfamily.

>cd05072 PTKc_Lyn Catalytic domain of the Protein Tyrosine Kinase, Lyn

Probab=99.95  E-value=7.5e-28  Score=214.14  Aligned_cols=219  Identities=16%  Similarity=0.168  Sum_probs=161.5

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~   96 (358)
                      ...+..+++|.+.....  ....+.++......  ..+.+++....... .....|+||||+.||+|.+++..  .....
T Consensus        27 ~~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  101 (261)
T cd05072          27 YNNSTKVAVKTLKPGTM--SVQAFLEEANLMKT--LQHDKLVRLYAVVT-KEEPIYIITEYMAKGSLLDFLKSDEGGKVL  101 (261)
T ss_pred             ecCCceEEEEEccCCch--hHHHHHHHHHHHHh--CCCCCeeeEEEEEc-CCCCcEEEEecCCCCcHHHHHHHhcCCCCC
Confidence            34455678887765322  24556666665555  35666666654443 34568999999999999998864  23466


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ..++..++.+++.++.++|..+++|+    +||+++.++.+||+|||++......    .....++..|+|||++.+..+
T Consensus       102 ~~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  181 (261)
T cd05072         102 LPKLIDFSAQIAEGMAYIERKNYIHRDLRAANVLVSESLMCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSF  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccccchhhEEecCCCcEEECCCccceecCCCceeccCCCccceecCCHHHhccCCC
Confidence            77888999999999999999999998    9999999999999999999765432    122345678999999998889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||....      .......+....                                  
T Consensus       182 ~~~~Di~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~~~~~----------------------------------  221 (261)
T cd05072         182 TIKSDVWSFGILLYEIVTYGKIPYPGMS------NSDVMSALQRGY----------------------------------  221 (261)
T ss_pred             ChhhhhhhhHHHHHHHHccCCCCCCCCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999998 999996433      222222221110                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ........+.++.+|+.+||..||++|||++++++
T Consensus       222 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  256 (261)
T cd05072         222 -------RMPRMENCPDELYDIMKTCWKEKAEERPTFDYLQS  256 (261)
T ss_pred             -------CCCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                   00111234567889999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lyn kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine and growth fa

>cd05047 PTKc_Tie Catalytic domain of Tie Protein Tyrosine Kinases

Probab=99.95  E-value=4.4e-28  Score=216.93  Aligned_cols=217  Identities=13%  Similarity=0.106  Sum_probs=160.1

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----------   93 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----------   93 (358)
                      .+++|.+...........+.++.+....+. .|++++....... .....|+||||+.+|+|.+++....          
T Consensus        24 ~~~~k~~~~~~~~~~~~~~~~E~~~l~~l~-~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~~~  101 (270)
T cd05047          24 DAAIKRMKEYASKDDHRDFAGELEVLCKLG-HHPNIINLLGACE-HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI  101 (270)
T ss_pred             EEEEEEccccCCHHHHHHHHHHHHHHHhhc-cCCCeeeEEEEEe-cCCCceEEEEeCCCCcHHHHHHhcccccccccccc
Confidence            457888876665666667777776665542 5666666655443 3456899999999999999875422          


Q ss_pred             ------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC--CCccCCCcchhH
Q 045353           94 ------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT--NDIQTRQYRCPE  161 (358)
Q Consensus        94 ------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~--~~~gt~~Y~aPE  161 (358)
                            .+...++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++........  ....+..|+|||
T Consensus       102 ~~~~~~~l~~~~~~~~~~~i~~al~~lH~~~i~H~dikp~nili~~~~~~kl~dfgl~~~~~~~~~~~~~~~~~~y~apE  181 (270)
T cd05047         102 ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE  181 (270)
T ss_pred             ccCCcCCCCHHHHHHHHHHHHHHHHHHHHCCEeecccccceEEEcCCCeEEECCCCCccccchhhhccCCCCccccCChH
Confidence                  35677889999999999999999999998    999999999999999999854322111  123356799999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||.+.+      .......+.   ...                        
T Consensus       182 ~~~~~~~~~~~Di~slG~il~el~~~g~~pf~~~~------~~~~~~~~~---~~~------------------------  228 (270)
T cd05047         182 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLP---QGY------------------------  228 (270)
T ss_pred             HHccCCCCchhhHHHHHHHHHHHHcCCCCCccccC------HHHHHHHHh---CCC------------------------
Confidence            9988889999999999999999997 999996432      111111110   000                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                    ....+...+..+.+|+.+||..||.+|||+.++++
T Consensus       229 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (270)
T cd05047         229 --------------RLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILV  263 (270)
T ss_pred             --------------CCCCCCcCCHHHHHHHHHHcccChhhCCCHHHHHH
Confidence                          00112234567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tie subfamily; catalytic (c) domain. The Tie subfamily consists of Tie1 and Tie2. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tie proteins are receptor tyr kinases (RTKs) containing an extracellular region, a transmembrane segment, and an intracellular catalytic domain. The extracellular region contains an immunoglobulin (Ig)-like domain, three epidermal growth factor (EGF)-like domains, a second Ig-like domain, and three fibronectin type III repeats. Tie receptors are specifically expressed in endothelial cells and hematopoietic stem cells. The angiopoietins (Ang-1 to Ang-4) serve as ligands for Tie2, while no specific l

>cd08228 STKc_Nek6 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 6

Probab=99.95  E-value=8.9e-28  Score=214.33  Aligned_cols=224  Identities=14%  Similarity=0.110  Sum_probs=163.5

Q ss_pred             ccCcccccccccC--ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----cc
Q 045353           20 ESSASKENKSLYG--DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~   93 (358)
                      .+|..+++|.+..  .........+.++.+....  ..+++++....... .....|+||||+.+|+|.+++..    ..
T Consensus        25 ~~~~~~~iK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~  101 (267)
T cd08228          25 LDRKPVALKKVQIFEMMDAKARQDCVKEIDLLKQ--LNHPNVIKYLDSFI-EDNELNIVLELADAGDLSQMIKYFKKQKR  101 (267)
T ss_pred             CCCCEEEEEEeeccccCCHHHHHHHHHHHHHHHh--CCCcceeeeeeeEE-ECCeEEEEEEecCCCcHHHHHHHhhhccC
Confidence            3567788887654  2333444555666555554  35666666554433 34678999999999999987752    33


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ..++.++..++.+++.++.|+|+.+++|+    +|||++.++.++|+|||++......   .....|++.|+|||.+.+.
T Consensus       102 ~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~~~nil~~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~  181 (267)
T cd08228         102 LIPERTVWKYFVQLCSAVEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  181 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCCHHHEEEcCCCCEEECccccceeccchhHHHhcCCCCccccChhhhccC
Confidence            46778889999999999999999999998    9999999999999999998765432   2244788999999999988


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|+||+||++|+|++|..||.....     +...+.......+.++                             
T Consensus       182 ~~~~~~Di~slG~~l~el~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~-----------------------------  227 (267)
T cd08228         182 GYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----NLFSLCQKIEQCDYPP-----------------------------  227 (267)
T ss_pred             CCCchhhHHHHHHHHHHHhcCCCCCccccc-----cHHHHHHHHhcCCCCC-----------------------------
Confidence            899999999999999999999999864321     1111111111111110                             


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                ......+..+.+||.+||..+|++|||+.++++.
T Consensus       228 ----------~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~vl~~  261 (267)
T cd08228         228 ----------LPTEHYSEKLRELVSMCIYPDPDQRPDIGYVHQI  261 (267)
T ss_pred             ----------CChhhcCHHHHHHHHHHCCCCcccCcCHHHHHHH
Confidence                      0112235678999999999999999999999863

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 is required for the transition from metaphase to anaphase. It also plays important roles in mitotic spindle formation and cytokinesis. Activated by Nek9 during mitosis, Nek6 phosphorylates Eg5, a kinesin that is important for spindle bipolarity. Nek6 localizes to spindle microtubules during metaphase

>cd05075 PTKc_Axl Catalytic domain of the Protein Tyrosine Kinase, Axl

Probab=99.95  E-value=1.1e-27  Score=214.29  Aligned_cols=218  Identities=12%  Similarity=0.107  Sum_probs=159.1

Q ss_pred             ccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCC-----CCCCCCCCcccccCCCCCcccccc------c
Q 045353           24 SKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADS-----KPSSPDNFSVDTIPNGVSVEERQN------D   91 (358)
Q Consensus        24 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv~e~~~gg~L~~~~~------~   91 (358)
                      .+|+|.+.... ++.....+.++.+....  +.|++++......     .......+++|||+.+|+|.+++.      .
T Consensus        28 ~~a~k~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~l~~~~~~~~~~~~  105 (272)
T cd05075          28 KVAVKTMKIAICTRSEMEDFLSEAVCMKE--FDHPNVMRLIGVCLQTVESEGYPSPVVILPFMKHGDLHSFLLYSRLGDC  105 (272)
T ss_pred             eEEEEecccCcCCHHHHHHHHHHHHHHHh--CCCCCcceEEEEEccCCcccCCCCcEEEEEeCCCCcHHHHHHHhcccCC
Confidence            47888776653 44445666666665555  3566666654422     122346789999999999988763      2


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHH
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEV  162 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~  162 (358)
                      ...+++..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||++.......     ....+++.|+|||+
T Consensus       106 ~~~~~~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~pe~  185 (272)
T cd05075         106 PQYLPTQMLVKFMTDIASGMEYLSSKSFIHRDLAARNCMLNENMNVCVADFGLSKKIYNGDYYRQGRIAKMPVKWIAIES  185 (272)
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHHCCeeccccchhheEEcCCCCEEECCCCcccccCcccceecCCcccCCcccCCHHH
Confidence            2346778889999999999999999999998    99999999999999999997654321     12245678999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      +.+..++.++|||||||++|+|++ |..||.+..      .......+..  +.                          
T Consensus       186 ~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~--------------------------  231 (272)
T cd05075         186 LADRVYTTKSDVWSFGVTMWEIATRGQTPYPGVE------NSEIYDYLRQ--GN--------------------------  231 (272)
T ss_pred             ccCCCcChHHHHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC--------------------------
Confidence            999889999999999999999999 889996432      1111111110  00                          


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                   ....+...+..+.++|.+||+.||++|||+.+++++
T Consensus       232 -------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~l~~~  267 (272)
T cd05075         232 -------------RLKQPPDCLDGLYSLMSSCWLLNPKDRPSFETLRCE  267 (272)
T ss_pred             -------------CCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                         001123345678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Axl; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Axl is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Axl is widely expressed in a variety of organs and cells including epithelial, mesenchymal, hematopoietic, as well as non-transfor

>cd05114 PTKc_Tec_Rlk Catalytic domain of the Protein Tyrosine Kinases, Tyrosine kinase expressed in hepatocellular carcinoma and Resting lymphocyte kinase

Probab=99.95  E-value=7.6e-28  Score=213.55  Aligned_cols=217  Identities=18%  Similarity=0.210  Sum_probs=158.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      .+..+|+|.....-.  ....+.++......  ..+++++....... .....|+||||++||+|.+++.. ...+++..
T Consensus        27 ~~~~~a~K~~~~~~~--~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~iv~e~~~~~~L~~~~~~~~~~~~~~~  101 (256)
T cd05114          27 AQIKVAIKAINEGAM--SEEDFIEEAKVMMK--LSHPKLVQLYGVCT-QQKPLYIVTEFMENGCLLNYLRQRQGKLSKDM  101 (256)
T ss_pred             cCceEEEEecccCCc--cHHHHHHHHHHHHH--CCCCCceeEEEEEc-cCCCEEEEEEcCCCCcHHHHHHhCccCCCHHH
Confidence            344677887654322  12445566555554  35666666554433 34568999999999999998864 34567888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +||+++.++.+||+|||.+......    .....++..|+|||++.+..++.+
T Consensus       102 ~~~~~~~i~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  181 (256)
T cd05114         102 LLSMCQDVCEGMEYLERNSFIHRDLAARNCLVSSTGVVKVSDFGMTRYVLDDEYTSSSGAKFPVKWSPPEVFNFSKYSSK  181 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCccccccCcceEEEcCCCeEEECCCCCccccCCCceeccCCCCCchhhCChhhcccCccchh
Confidence            89999999999999999999998    9999999999999999998754321    112234568999999998889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +||||+||++|+|++ |+.||...+      ..+.+..+.+  +..                                  
T Consensus       182 ~Di~s~G~~l~el~~~g~~p~~~~~------~~~~~~~i~~--~~~----------------------------------  219 (256)
T cd05114         182 SDVWSFGVLMWEVFTEGKMPFEKKS------NYEVVEMISR--GFR----------------------------------  219 (256)
T ss_pred             hhhHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHC--CCC----------------------------------
Confidence            999999999999999 899996443      1222222211  000                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ...+...+..+.+|+.+||..||++|||++++++
T Consensus       220 -----~~~~~~~~~~~~~li~~c~~~~p~~Rps~~~l~~  253 (256)
T cd05114         220 -----LYRPKLASMTVYEVMYSCWHEKPEGRPTFAELLR  253 (256)
T ss_pred             -----CCCCCCCCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                 0111223567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) and Resting lymphocyte kinase (Rlk); catalytic (c) domain. The PTKc family is part of a larger superfamily, that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec and Rlk (also named Txk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin h

>cd05041 PTKc_Fes_like Catalytic domain of Fes-like Protein Tyrosine Kinases

Probab=99.95  E-value=1e-27  Score=211.92  Aligned_cols=222  Identities=15%  Similarity=0.166  Sum_probs=165.7

Q ss_pred             ccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccC
Q 045353           18 VTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNN   96 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~   96 (358)
                      ....|..+++|.............++++.+...+.  .+++++...... ......|+||||++|++|.+++.. .....
T Consensus        15 ~~~~~~~v~~K~~~~~~~~~~~~~~~~e~~~l~~l--~~~~i~~~~~~~-~~~~~~~~v~e~~~~~~l~~~l~~~~~~~~   91 (251)
T cd05041          15 VLKGNTEVAVKTCRSTLPPDLKRKFLQEAEILKQY--DHPNIVKLIGVC-VQKQPIYIVMELVPGGSLLTFLRKKKNRLT   91 (251)
T ss_pred             EEeCCCcEEEEeccccCCHHHHHHHHHHHHHHHhC--CCCCeEEEEEEE-ecCCCeEEEEEcCCCCcHHHHHHhcCCCCC
Confidence            33447788999888777666667777777766653  556565554433 234578999999999999998854 33467


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC-----CCccCCCcchhHHHhCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT-----NDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~-----~~~gt~~Y~aPE~l~~~~  167 (358)
                      ...+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++........     ...++..|+|||.+.+..
T Consensus        92 ~~~~~~~~~~~~~~l~~lH~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~  171 (251)
T cd05041          92 VKKLLQMSLDAAAGMEYLESKNCIHRDLAARNCLVGENNVLKISDFGMSREEEGGIYTVSDGLKQIPIKWTAPEALNYGR  171 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEehhhcCcceEEEcCCCcEEEeeccccccccCCcceeccccCcceeccCChHhhccCC
Confidence            77888899999999999999999999    999999999999999999976542211     123356799999999888


Q ss_pred             CCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++ |..||....      .......+....                                 
T Consensus       172 ~~~~~Di~slG~i~~~l~t~~~~p~~~~~------~~~~~~~~~~~~---------------------------------  212 (251)
T cd05041         172 YTSESDVWSYGILLWETFSLGDTPYPGMS------NQQTRERIESGY---------------------------------  212 (251)
T ss_pred             CCcchhHHHHHHHHHHHHhccCCCCccCC------HHHHHHHHhcCC---------------------------------
Confidence            9999999999999999998 888886443      111111110000                                 


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                              ....+...+..+.+|+.+||..+|.+|||+.|+++
T Consensus       213 --------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~ell~  247 (251)
T cd05041         213 --------RMPAPQLCPEEIYRLMLQCWAYDPENRPSFSEIYN  247 (251)
T ss_pred             --------CCCCCccCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                    01122334678999999999999999999999986

Protein Tyrosine Kinase (PTK) family; Fes subfamily; catalytic (c) domain. Fes subfamily members include Fes (or Fps), Fer, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Fes subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal region with FCH (Fes/Fer/CIP4 homology) and coiled-coil domains, followed by a SH2 domain, and a C-terminal catalytic domain. The genes for Fes (feline sarcoma) and Fps (Fujinami poultry sarcoma) were first isolated from tumor-causing retroviruses. The viral oncogenes encode chimeric Fes proteins consisting of Gag sequences at the N-termini, resulting in unregulated tyr k

>cd05050 PTKc_Musk Catalytic domain of the Protein Tyrosine Kinase, Muscle-specific kinase

Probab=99.95  E-value=1.2e-27  Score=216.00  Aligned_cols=219  Identities=14%  Similarity=0.145  Sum_probs=164.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      .+..+++|.+....+...++.+.++.+.....  .|++++........ ....|+||||+.+|+|.+++...        
T Consensus        34 ~~~~~aiK~~~~~~~~~~~~~~~~ei~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  110 (288)
T cd05050          34 PFTMVAVKMLKEEASADMQADFQREAALMAEF--DHPNIVKLLGVCAV-GKPMCLLFEYMAYGDLNEFLRHRSPRAQCSL  110 (288)
T ss_pred             cceeEEEEecCCCcCHHHHHHHHHHHHHHHhc--CCCchheEEEEEcC-CCccEEEEecCCCCCHHHHHHHcCccccccc
Confidence            45578899998877777777788887766663  56667666554333 34679999999999999987532        


Q ss_pred             --------------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CC
Q 045353           93 --------------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FT  149 (358)
Q Consensus        93 --------------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~  149 (358)
                                    ..+.+.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     ..
T Consensus       111 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~  190 (288)
T cd05050         111 SHSTSSARKCGLNPLPLSCTEQLCIAKQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYKASE  190 (288)
T ss_pred             cccccccccccccccccCHHHHHHHHHHHHHHHHHHHhCCeecccccHhheEecCCCceEECccccceecccCccccccC
Confidence                          124566778999999999999999999999    9999999999999999998754322     12


Q ss_pred             CCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh
Q 045353          150 NDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR  228 (358)
Q Consensus       150 ~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  228 (358)
                      ...++..|+|||++.+..++.++|||||||++|+|++ |..||.+.+      ..+....+..  +.             
T Consensus       191 ~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~~~~~p~~~~~------~~~~~~~~~~--~~-------------  249 (288)
T cd05050         191 NDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGMQPYYGMA------HEEVIYYVRD--GN-------------  249 (288)
T ss_pred             CCccChhhcCHHHHhcCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHhc--CC-------------
Confidence            2345667999999998889999999999999999997 888885432      1111111110  00             


Q ss_pred             hhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                ....+...+..+.+||.+||+.||++|||+.|+++
T Consensus       250 --------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~el~~  284 (288)
T cd05050         250 --------------------------VLSCPDNCPLELYNLMRLCWSKLPSDRPSFASINR  284 (288)
T ss_pred             --------------------------CCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                                      00112334678899999999999999999999874

Protein Tyrosine Kinase (PTK) family; Muscle-specific kinase (Musk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Musk is a receptor tyr kinase (RTK) containing an extracellular region with four immunoglobulin-like domains and a cysteine-rich cluster, a transmembrane segment, and an intracellular catalytic domain. Musk is expressed and concentrated in the postsynaptic membrane in skeletal muscle. It is essential for the establishment of the neuromuscular junction (NMJ), a peripheral synapse that conveys signals from motor neurons to muscle cells. Agrin, a large proteoglycan released from motor neurons, stimulates M

>cd05095 PTKc_DDR2 Catalytic domain of the Protein Tyrosine Kinase, Discoidin Domain Receptor 2

Probab=99.95  E-value=1.1e-27  Score=217.15  Aligned_cols=227  Identities=15%  Similarity=0.126  Sum_probs=163.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      .++..+|+|.+........+..+.++.+....+  .+.+++....... .....|+||||+.||+|.+++....      
T Consensus        44 ~~~~~~a~K~~~~~~~~~~~~~~~~E~~~l~~l--~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  120 (296)
T cd05095          44 NQPVLVAVKMLREDANKNARNDFLKEIKIMSRL--KDPNIIRLLAVCI-TSDPLCMITEYMENGDLNQFLSRHEPQEAAE  120 (296)
T ss_pred             CceeEEEEEeccccCCHHHHHHHHHHHHHHHhC--CCCCcceEEEEEe-cCCccEEEEEeCCCCcHHHHHHhcCcccccc
Confidence            344568999998777677777888887766653  5566665554432 3456899999999999999876432      


Q ss_pred             -----ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcch
Q 045353           94 -----VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRC  159 (358)
Q Consensus        94 -----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~a  159 (358)
                           ..+..++..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++......     .....++..|++
T Consensus       121 ~~~~~~~~~~~~~~~~~~i~~al~~lH~~~i~H~dlkp~Nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~  200 (296)
T cd05095         121 KADVVTISYSTLIFMATQIASGMKYLSSLNFVHRDLATRNCLVGKNYTIKIADFGMSRNLYSGDYYRIQGRAVLPIRWMS  200 (296)
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHCCeecccCChheEEEcCCCCEEeccCcccccccCCcceeccCcCcCccccCC
Confidence                 24456789999999999999999999999    9999999999999999999754322     112234678999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhc--CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELAT--GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      ||++.+..++.++|||||||++|+|++  |..||...+      ..+.+......+.                  .... 
T Consensus       201 pe~~~~~~~~~~~DiwSlG~~l~el~~~~~~~p~~~~~------~~~~~~~~~~~~~------------------~~~~-  255 (296)
T cd05095         201 WESILLGKFTTASDVWAFGVTLWEILTLCKEQPYSQLS------DEQVIENTGEFFR------------------DQGR-  255 (296)
T ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHhCCCCCccccC------hHHHHHHHHHHHh------------------hccc-
Confidence            999998889999999999999999998  678885433      1111111111000                  0000 


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                     ......+..++..+.+|+.+||+.||.+|||+.++++
T Consensus       256 ---------------~~~~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~i~~  292 (296)
T cd05095         256 ---------------QVYLPKPALCPDSLYKLMLSCWRRNAKERPSFQEIHA  292 (296)
T ss_pred             ---------------cccCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                           0001112334578899999999999999999999864

Protein Tyrosine Kinase (PTK) family; mammalian Discoidin Domain Receptor 2 (DDR2) and homologs; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. DDR2 is a member of the DDR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular discoidin homology domain, a transmembrane segment, an extended juxtamembrane region, and an intracellular catalytic domain. The binding of the ligand, collagen, to DDRs results in a slow but sustained receptor activation. DDR2 binds mostly to fibrillar collagens. More recently, it has been reported to also bind collagen X. DDR2 is widely expressed in many tissues wit

>cd05056 PTKc_FAK Catalytic domain of the Protein Tyrosine Kinase, Focal Adhesion Kinase

Probab=99.95  E-value=1.3e-27  Score=213.84  Aligned_cols=217  Identities=13%  Similarity=0.122  Sum_probs=165.9

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~~  101 (358)
                      ..+++|.............+..+.....+.  .+++++.......  +...|+||||+++|+|.+++.... .+.+..+.
T Consensus        35 ~~v~ik~~~~~~~~~~~~~~~~e~~~l~~~--~h~~i~~~~~~~~--~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  110 (270)
T cd05056          35 IAVAVKTCKNCTSPSVREKFLQEAYIMRQF--DHPHIVKLIGVIT--ENPVWIVMELAPLGELRSYLQVNKYSLDLASLI  110 (270)
T ss_pred             cceEEEecCCcCCHHHHHHHHHHHHHHHhC--CCCchhceeEEEc--CCCcEEEEEcCCCCcHHHHHHhCCCCCCHHHHH
Confidence            467889888877777777777776665553  5667777665433  356789999999999999987533 47888999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC----CCCccCCCcchhHHHhCCCCCcchh
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF----TNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~----~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.......    +...++..|+|||.+.+..++.++|
T Consensus       111 ~~~~~l~~~l~~lH~~~~~H~dl~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  190 (270)
T cd05056         111 LYSYQLSTALAYLESKRFVHRDIAARNVLVSSPDCVKLGDFGLSRYLEDESYYKASKGKLPIKWMAPESINFRRFTSASD  190 (270)
T ss_pred             HHHHHHHHHHHHHHhCCeeccccChheEEEecCCCeEEccCceeeecccccceecCCCCccccccChhhhccCCCCchhh
Confidence            999999999999999999998    99999999999999999997654321    1223456899999998888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|++++ |..||.+.+      ..+.+..+..  +.                                     
T Consensus       191 i~slG~il~el~~~g~~pf~~~~------~~~~~~~~~~--~~-------------------------------------  225 (270)
T cd05056         191 VWMFGVCMWEILMLGVKPFQGVK------NNDVIGRIEN--GE-------------------------------------  225 (270)
T ss_pred             hHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHc--CC-------------------------------------
Confidence            9999999999986 999996543      1122211110  00                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                        ....+...+..+.++|.+||..+|.+|||+.+++..
T Consensus       226 --~~~~~~~~~~~~~~li~~~l~~~P~~Rpt~~~~~~~  261 (270)
T cd05056         226 --RLPMPPNCPPTLYSLMTKCWAYDPSKRPRFTELKAQ  261 (270)
T ss_pred             --cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence              011233446789999999999999999999998753

Protein Tyrosine Kinase (PTK) family; Focal Adhesion Kinase (FAK); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FAK is a cytoplasmic (or nonreceptor) tyr kinase that contains an autophosphorylation site and a FERM domain at the N-terminus, a central tyr kinase domain, proline-rich regions, and a C-terminal FAT (focal adhesion targeting) domain. FAK activity is dependent on integrin-mediated cell adhesion, which facilitates N-terminal autophosphorylation. Full activation is achieved by the phosphorylation of its two adjacent A-loop tyrosines. FAK is important in mediating signaling initiated at sites of cell adhesions

>KOG1151 consensus Tousled-like protein kinase [Signal transduction mechanisms]

Probab=99.95  E-value=1e-28  Score=220.77  Aligned_cols=230  Identities=15%  Similarity=0.141  Sum_probs=181.2

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhh--ccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQG--CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      .|.|.-|+..|-+.+|..+.+.+=++-..  -+.|+.||-.++....+...++-|.|||+|.+|.-++.....+++.+++
T Consensus       492 AvKIHqlNK~WrdEKKeNYhKHAcREyrIHKeLDHpRIVKlYDyfslDtdsFCTVLEYceGNDLDFYLKQhklmSEKEAR  571 (775)
T KOG1151|consen  492 AVKIHQLNKNWRDEKKENYHKHACREYRIHKELDHPRIVKLYDYFSLDTDSFCTVLEYCEGNDLDFYLKQHKLMSEKEAR  571 (775)
T ss_pred             eEeeehhccchhhHhhhhHHHHHHHHHhhhhccCcceeeeeeeeeeeccccceeeeeecCCCchhHHHHhhhhhhHHHHH
Confidence            34566789999999998888777444432  2688899999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccccccCCC--CCC----cccccccC---CCcEEEEecCCceecCCCC----------CCCccCCCcchhHH
Q 045353          102 NEVKNTSQGVKGHRRPS--RAT----RKNLLAAV---DVQCKLVDFGNACWTHKQF----------TNDIQTRQYRCPEV  162 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~--~~h----r~NILl~~---~~~vkL~DFG~a~~~~~~~----------~~~~gt~~Y~aPE~  162 (358)
                      .++.|++.++.|+...+  |||    |.|||+-+   -|.+||+|||+++.++...          ....||.||++||.
T Consensus       572 SIiMQiVnAL~YLNEikpPIIHYDLKPgNILLv~GtacGeIKITDFGLSKIMdddSy~~vdGmeLTSQgAGTYWYLPPEc  651 (775)
T KOG1151|consen  572 SIIMQIVNALKYLNEIKPPIIHYDLKPGNILLVNGTACGEIKITDFGLSKIMDDDSYNSVDGMELTSQGAGTYWYLPPEC  651 (775)
T ss_pred             HHHHHHHHHHHHHhccCCCeeeeccCCccEEEecCcccceeEeeecchhhhccCCccCcccceeeecccCceeeecCcce
Confidence            99999999999998754  444    48999854   4889999999998876432          23489999999998


Q ss_pred             HhCC----CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          163 LLGS----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       163 l~~~----~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      +.-.    ..+.++||||+|||+|..+.|+.||.....     ..+.+. -..++.                        
T Consensus       652 FvVgkePPKIsnKVDVWSvGVIFyQClYGrKPFGhnqs-----QQdILq-eNTIlk------------------------  701 (775)
T KOG1151|consen  652 FVVGKEPPKISNKVDVWSVGVIFYQCLYGRKPFGHNQS-----QQDILQ-ENTILK------------------------  701 (775)
T ss_pred             eecCCCCCccccceeeEeeehhhhhhhccCCCCCCchh-----HHHHHh-hhchhc------------------------
Confidence            8643    279999999999999999999999953321     111111 011110                        


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                  ...-.++..+.++.++.+||++||++.-++|+...|+..||||..
T Consensus       702 ------------AtEVqFP~KPvVsseAkaFIRRCLaYRKeDR~DV~qLA~dpyllP  746 (775)
T KOG1151|consen  702 ------------ATEVQFPPKPVVSSEAKAFIRRCLAYRKEDRIDVQQLACDPYLLP  746 (775)
T ss_pred             ------------ceeccCCCCCccCHHHHHHHHHHHHhhhhhhhhHHHHccCccccc
Confidence                        000122334556889999999999999999999999999999985

>cd05107 PTKc_PDGFR_beta Catalytic domain of the Protein Tyrosine Kinase, Platelet Derived Growth Factor Receptor beta

Probab=99.95  E-value=1.7e-27  Score=224.03  Aligned_cols=222  Identities=14%  Similarity=0.138  Sum_probs=165.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      .+..||+|.+...........+.++.+..+.+ ..|++++.+...... ....|+|||||.||+|.+++....       
T Consensus        66 ~~~~vavK~l~~~~~~~~~~~~~~E~~~l~~l-~~H~niv~~~~~~~~-~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~  143 (401)
T cd05107          66 STMKVAVKMLKSTARSSEKQALMSELKIMSHL-GPHLNIVNLLGACTK-GGPIYIITEYCRYGDLVDYLHRNKHTFLQYY  143 (401)
T ss_pred             CceEEEEEecCCCCChhHHHHHHHHHHHHHhc-CCCCCeEEEEEEEcc-CCCcEEEEeccCCCcHHHHHHhccccchhhh
Confidence            34468999998776666666777777766664 236778877665443 457899999999999998875321       


Q ss_pred             --------------------------------------------------------------------------------
Q 045353           94 --------------------------------------------------------------------------------   93 (358)
Q Consensus        94 --------------------------------------------------------------------------------   93 (358)
                                                                                                      
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (401)
T cd05107         144 LDKNRDDGSLISGGSTPLSQRKSHVSLGSESDGGYMDMSKDESADYVPMQDMKGTVKYADIESSNYESPYDQYLPSAPER  223 (401)
T ss_pred             cccccccccccccccccccccccchhhhhccCccccccCCccccCccchhcchhhhhhhhhhccCcCCchhhhhcccCCC
Confidence                                                                                            


Q ss_pred             -----------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCcc
Q 045353           94 -----------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQ  153 (358)
Q Consensus        94 -----------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~g  153 (358)
                                 .++..++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+++.....     .....+
T Consensus       224 ~~~~~~~~~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrdlkp~NiLl~~~~~~kL~DfGla~~~~~~~~~~~~~~~~~  303 (401)
T cd05107         224 TRRDTLINESPALSYMDLVGFSYQVANGMEFLASKNCVHRDLAARNVLICEGKLVKICDFGLARDIMRDSNYISKGSTFL  303 (401)
T ss_pred             cchhhhhcCCCCCCHHHHHHHHHHHHHHHHHHhcCCcCcccCCcceEEEeCCCEEEEEecCcceecccccccccCCCcCC
Confidence                       23445567788999999999999999999    9999999999999999999754211     123457


Q ss_pred             CCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh
Q 045353          154 TRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN  232 (358)
Q Consensus       154 t~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  232 (358)
                      +..|+|||++.+..++.++|||||||++|+|++ |..||....      ..+.+...... +.                 
T Consensus       304 ~~~y~aPE~~~~~~~~~~~DvwslGvil~e~l~~g~~P~~~~~------~~~~~~~~~~~-~~-----------------  359 (401)
T cd05107         304 PLKWMAPESIFNNLYTTLSDVWSFGILLWEIFTLGGTPYPELP------MNEQFYNAIKR-GY-----------------  359 (401)
T ss_pred             CCceeChHHhcCCCCCcHhHHHHHHHHHHHHHHcCCCCCCCCC------chHHHHHHHHc-CC-----------------
Confidence            788999999998889999999999999999998 888985432      11111111000 00                 


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                            ....+...+.++.+|+.+||..||.+||+++++++.
T Consensus       360 ----------------------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~ell~~  395 (401)
T cd05107         360 ----------------------RMAKPAHASDEIYEIMQKCWEEKFEIRPDFSQLVHL  395 (401)
T ss_pred             ----------------------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                  001223346789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Platelet Derived Growth Factor Receptor (PDGFR) beta; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. PDGFR beta is a receptor tyr kinase (RTK) containing an extracellular ligand-binding region with five immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding to its ligands, the PDGFs, leads to receptor dimerization, trans phosphorylation and activation, and intracellular signaling. PDGFR beta forms homodimers or heterodimers with PDGFR alpha, depending on the nature of the PDGF ligand. PDGF-BB and PDGF-D

>cd05063 PTKc_EphR_A2 Catalytic domain of the Protein Tyrosine Kinase, Ephrin Receptor A2

Probab=99.95  E-value=1.1e-27  Score=213.80  Aligned_cols=217  Identities=14%  Similarity=0.185  Sum_probs=163.9

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~  101 (358)
                      ..+++|..........+.++..+.+.....  .+++++....... .....|+||||+++|+|.+++.. ...+++.++.
T Consensus        34 ~~~~ik~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~  110 (268)
T cd05063          34 VAVAIKTLKPGYTEKQRQDFLSEASIMGQF--SHHNIIRLEGVVT-KFKPAMIITEYMENGALDKYLRDHDGEFSSYQLV  110 (268)
T ss_pred             eEEEEEeccccCCHHHHHHHHHHHHHHhcC--CCCCeeEEEEEEc-cCCCcEEEEEcCCCCCHHHHHHhcCCCCCHHHHH
Confidence            368999988777666677777776655553  5566666554433 34578999999999999998864 3567888899


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC------CCccCCCcchhHHHhCCCCCcc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~------~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||++........      ....+..|+|||++.+..++.+
T Consensus       111 ~~~~~l~~al~~lH~~~i~H~dlkp~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~  190 (268)
T cd05063         111 GMLRGIAAGMKYLSDMNYVHRDLAARNILVNSNLECKVSDFGLSRVLEDDPEGTYTTSGGKIPIRWTAPEAIAYRKFTSA  190 (268)
T ss_pred             HHHHHHHHHHHHHHHCCeeccccchhhEEEcCCCcEEECCCccceecccccccceeccCCCcCceecCHHHhhcCCcChH
Confidence            999999999999999999998    999999999999999999976532211      1123457999999998889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||...+      .......+... ...                                  
T Consensus       191 ~Dv~slG~il~ell~~g~~p~~~~~------~~~~~~~i~~~-~~~----------------------------------  229 (268)
T cd05063         191 SDVWSFGIVMWEVMSFGERPYWDMS------NHEVMKAINDG-FRL----------------------------------  229 (268)
T ss_pred             hHHHHHHHHHHHHHhCCCCCCCcCC------HHHHHHHHhcC-CCC----------------------------------
Confidence            999999999999987 999996433      22222222211 000                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ..+...+..+.+|+.+||..||++||++.++++
T Consensus       230 ------~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~i~~  262 (268)
T cd05063         230 ------PAPMDCPSAVYQLMLQCWQQDRARRPRFVDIVN  262 (268)
T ss_pred             ------CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence                  111223567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; EphA2 receptor; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. EphRs contain an ephrin binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephrin ligand to EphR requires cell-cell contact since both are anchored

>cd05044 PTKc_c-ros Catalytic domain of the Protein Tyrosine Kinase, C-ros

Probab=99.95  E-value=1.8e-27  Score=212.56  Aligned_cols=218  Identities=18%  Similarity=0.206  Sum_probs=164.5

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------cc
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------VV   94 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------~~   94 (358)
                      +..+++|.+....+......+.++......  +.|++++....... .....|+||||++||+|.+++...       ..
T Consensus        26 ~~~~~iK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~  102 (269)
T cd05044          26 PIRVAVKTLRKGATDQEKKEFLKEAHLMSN--FNHPNIVKLLGVCL-LNEPQYIIMELMEGGDLLSYLRDARVERFGPPL  102 (269)
T ss_pred             ceeehhhhhhcccchhhHHHHHHHHHHHHh--cCCCCeeeEeeeec-CCCCeEEEEeccCCCcHHHHHHHhhhcccCCcc
Confidence            356888988877766667777777766655  35677776655443 345689999999999999988632       33


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-----cEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-----QCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-----~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                      +.+.++..++.+++.++.|+|+.+++|+    +|||++.++     .+||+|||++......     .....++..|+||
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lH~~~i~H~dl~p~nil~~~~~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  182 (269)
T cd05044         103 LTLKELLDICLDVAKGCVYLEQMHFIHRDLAARNCLVSEKGYDADRVVKIGDFGLARDIYKSDYYRKEGEGLLPVRWMAP  182 (269)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCcccCCCChheEEEecCCCCCCcceEECCcccccccccccccccCcccCCCccccCH
Confidence            5678888999999999999999999998    999999887     8999999998654321     1223456789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |..||....      .......+..  +.                        
T Consensus       183 E~~~~~~~~~~~Dv~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~--~~------------------------  230 (269)
T cd05044         183 ESLLDGKFTTQSDVWSFGVLMWEILTLGQQPYPALN------NQEVLQHVTA--GG------------------------  230 (269)
T ss_pred             HHHccCCcccchhHHHHHHHHHHHHHcCCCCCcccC------HHHHHHHHhc--CC------------------------
Confidence            99998889999999999999999998 999996432      1121111100  00                        


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                     ....+...+..+.+||.+||..+|.+|||++++++
T Consensus       231 ---------------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  265 (269)
T cd05044         231 ---------------RLQKPENCPDKIYQLMTNCWAQDPSERPTFDRIQE  265 (269)
T ss_pred             ---------------ccCCcccchHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                           11122334678899999999999999999999865

Protein Tyrosine Kinases (PTK) family; C-ros and Drosophila Sevenless proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The proto-oncogene c-ros encodes an orphan receptor tyr kinase (RTK) with an unknown ligand. RTKs contain an extracellular ligand-binding domain, a transmembrane region, and an intracellular tyr kinase domain. RTKs are usually activated through ligand binding, which causes dimerization and autophosphorylation of the intracellular tyr kinase catalytic domain. C-ros is expressed in embryonic cells of the kidney, intestine and lung, but disappears soon after birth. It persists only in the adult epididymis. Male

>cd05059 PTKc_Tec_like Catalytic domain of Tec-like Protein Tyrosine Kinases

Probab=99.95  E-value=1.1e-27  Score=212.51  Aligned_cols=218  Identities=15%  Similarity=0.164  Sum_probs=158.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      .+..+++|........  ..++.++.+...+  +.+.+++....... .....|+||||++|++|.+++.. ...+++..
T Consensus        27 ~~~~~~iK~~~~~~~~--~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  101 (256)
T cd05059          27 GKIDVAIKMIREGAMS--EDDFIEEAKVMMK--LSHPNLVQLYGVCT-KQRPIFIVTEYMANGCLLNYLRERKGKLGTEW  101 (256)
T ss_pred             CCccEEEEEeccCCCC--HHHHHHHHHHHHh--CCCCCEEEEEEEEc-CCCceEEEEecCCCCCHHHHHHhcccCCCHHH
Confidence            3446777876543221  2344455554444  35666666554433 34568999999999999998864 34677888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-CCC---ccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-TND---IQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-~~~---~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +||++++++.+||+|||+++...... ...   .++..|+|||++.+..++.+
T Consensus       102 ~~~i~~qi~~~l~~lH~~~i~H~dl~p~ni~i~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~~~  181 (256)
T cd05059         102 LLDMCSDVCEAMEYLESNGFIHRDLAARNCLVGEDNVVKVSDFGLARYVLDDQYTSSQGTKFPVKWAPPEVFDYSRFSSK  181 (256)
T ss_pred             HHHHHHHHHHHHHHHHHCCcccccccHhhEEECCCCcEEECCcccceecccccccccCCCCCCccccCHHHhccCCCCch
Confidence            99999999999999999999999    99999999999999999997654321 111   23457999999999889999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||....      ..+....+....                                     
T Consensus       182 ~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~~~-------------------------------------  218 (256)
T cd05059         182 SDVWSFGVLMWEVFSEGKMPYERFS------NSEVVESVSAGY-------------------------------------  218 (256)
T ss_pred             hhHHHHHHHHHHHhccCCCCCCCCC------HHHHHHHHHcCC-------------------------------------
Confidence            999999999999998 889996433      122221111100                                     


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                          ....+...+..+.+++.+||..+|++|||+.++++.
T Consensus       219 ----~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~~~l~~  254 (256)
T cd05059         219 ----RLYRPKLAPTEVYTIMYSCWHEKPEDRPAFKKLLSQ  254 (256)
T ss_pred             ----cCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHH
Confidence                001223346789999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase expressed in hepatocellular carcinoma (Tec) subfamily; catalytic (c) domain. The Tec subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tec kinases are cytoplasmic (or nonreceptor) tyr kinases (nRTKs) with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows

>cd05610 STKc_MASTL Catalytic domain of the Protein Serine/Threonine Kinase, Microtubule-associated serine/threonine-like kinase

Probab=99.95  E-value=6.3e-28  Score=240.76  Aligned_cols=119  Identities=17%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .|..||+|++...-.  ......+.++......  +.+++++....... .....|+||||+.||+|.+++.....+.+.
T Consensus        28 ~~~~vAiKvi~~~~~~~~~~~~~~~~E~~~l~~--l~hp~Iv~~~~~~~-~~~~~~lVmEy~~g~~L~~li~~~~~l~~~  104 (669)
T cd05610          28 NSKLYAVKVVKKADMINKNMVHQVQAERDALAL--SKSPFIVHLYYSLQ-SANNVYLVMEYLIGGDVKSLLHIYGYFDEE  104 (669)
T ss_pred             CCcEEEEEEEehhhccCHHHHHHHHHHHHHHHh--cCCCCcCeEEEEEE-ECCEEEEEEeCCCCCCHHHHHHhcCCCCHH
Confidence            577899998865332  2223444444444433  45666776654433 345789999999999999999877778888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      .+..++.+++.++.|+|..+++||    +|||++.++.+||+|||+++
T Consensus       105 ~~~~i~~qil~aL~yLH~~gIiHrDLKP~NILl~~~g~vkL~DFGls~  152 (669)
T cd05610         105 MAVKYISEVALALDYLHRHGIIHRDLKPDNMLISNEGHIKLTDFGLSK  152 (669)
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEeCCccHHHEEEcCCCCEEEEeCCCCc
Confidence            899999999999999999999999    99999999999999999874

Serine/Threonine Kinases (STKs), Microtubule-associated serine/threonine (MAST) kinase subfamily, MAST-like (MASTL) kinases, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The MAST kinase subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. MAST kinases contain an N-terminal domain of unknown function, a central catalytic domain, and a C-terminal PDZ domain that mediates protein-protein interactions. The MASTL kinases in this group carry only a catalytic domain, which contains a long insertion relative to MAST kinases. The human MASTL gene has also been labelled FLJ14813. A missense mutation in FLJ1481

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=99.95  E-value=6.7e-28  Score=240.68  Aligned_cols=222  Identities=17%  Similarity=0.158  Sum_probs=162.1

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----   92 (358)
                      .+|..||+|.+......+.  ++++.++.+....  ..|++++....... .....|+||||++||+|.+++...     
T Consensus        25 ~tg~~VAIK~I~~~l~~~e~~~~rflrEi~ILs~--L~HPNIVkl~~v~~-d~~~lyLVMEY~eGGSL~~lL~s~~~~~~  101 (932)
T PRK13184         25 VCSRRVALKKIREDLSENPLLKKRFLREAKIAAD--LIHPGIVPVYSICS-DGDPVYYTMPYIEGYTLKSLLKSVWQKES  101 (932)
T ss_pred             CCCcEEEEEEECcccccCHHHHHHHHHHHHHHHh--CCCcCcCeEEEEEe-eCCEEEEEEEcCCCCCHHHHHHHhhhccc
Confidence            4577899999987766543  4566677666665  45677777665443 345789999999999999877531     


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----------------
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----------------  146 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----------------  146 (358)
                            ...+...+..++.+++.++.++|+.+++||    +|||++.++.+||+|||+|.....                
T Consensus       102 l~e~~~~~lsv~~iL~I~~QIa~AL~yLHs~GIIHRDLKPeNILLd~dg~vKLiDFGLAk~i~~~~~~~~~l~~~~~~s~  181 (932)
T PRK13184        102 LSKELAEKTSVGAFLSIFHKICATIEYVHSKGVLHRDLKPDNILLGLFGEVVILDWGAAIFKKLEEEDLLDIDVDERNIC  181 (932)
T ss_pred             cchhhhcccCHHHHHHHHHHHHHHHHHHHHCCccccCCchheEEEcCCCCEEEEecCcceeccccccccccccccccccc
Confidence                  123345667889999999999999999999    999999999999999999975411                


Q ss_pred             -----CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhh
Q 045353          147 -----QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA  221 (358)
Q Consensus       147 -----~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  221 (358)
                           .....+||+.|+|||++.+..++.++||||+||++|+|++|..||.......      ...  ...... |.   
T Consensus       182 ~s~~t~~g~~vGT~~YmAPE~l~g~~~S~kSDIWSLGVILyELLTG~~PF~~~~~~k------i~~--~~~i~~-P~---  249 (932)
T PRK13184        182 YSSMTIPGKIVGTPDYMAPERLLGVPASESTDIYALGVILYQMLTLSFPYRRKKGRK------ISY--RDVILS-PI---  249 (932)
T ss_pred             ccccccCCCCCCCCCCCCHHHhcCCCCCcHhHHHHHHHHHHHHHHCCCCCCCcchhh------hhh--hhhccC-hh---
Confidence                 0112479999999999999999999999999999999999999996533110      000  000000 00   


Q ss_pred             cCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          222 LGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                       ........++.+.+++.+||..||++|++..+.+.
T Consensus       250 ---------------------------------~~~p~~~iP~~L~~LI~rcL~~DP~kR~ss~eeLl  284 (932)
T PRK13184        250 ---------------------------------EVAPYREIPPFLSQIAMKALAVDPAERYSSVQELK  284 (932)
T ss_pred             ---------------------------------hccccccCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                                             00001234567889999999999999987666554

>cd05113 PTKc_Btk_Bmx Catalytic domain of the Protein Tyrosine Kinases, Bruton's tyrosine kinase and Bone marrow kinase on the X chromosome

Probab=99.95  E-value=1.3e-27  Score=212.19  Aligned_cols=216  Identities=17%  Similarity=0.190  Sum_probs=159.6

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~  101 (358)
                      ..+|+|.+......  ...+.++.....+  +.+++++....... .....|+||||+.+|+|.+++... ..+.+.++.
T Consensus        29 ~~~aik~~~~~~~~--~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~i~~~~~~~~~~~~~  103 (256)
T cd05113          29 YDVAIKMIKEGSMS--EDEFIEEAKVMMK--LSHEKLVQLYGVCT-KQRPIYIVTEYMSNGCLLNYLREHGKRFQPSQLL  103 (256)
T ss_pred             CcEEEEEcCCCccc--HHHHHHHHHHHhc--CCCCCeeeEEEEEc-cCCCcEEEEEcCCCCcHHHHHHhcCCCCCHHHHH
Confidence            35788877654321  2345556555554  45677777665543 334679999999999999988653 357888999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-C---CCCccCCCcchhHHHhCCCCCcchh
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-F---TNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~---~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++.+++.++.++|+.+++|+    .|||++.++.+||+|||.+...... .   ....++..|+|||++.+..++.++|
T Consensus       104 ~~~~~i~~~l~~lH~~~i~H~dl~p~nili~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~D  183 (256)
T cd05113         104 EMCKDVCEGMAYLESKQFIHRDLAARNCLVDDQGCVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLLYSKFSSKSD  183 (256)
T ss_pred             HHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCCEEECCCccceecCCCceeecCCCccChhhCCHHHHhcCcccchhH
Confidence            999999999999999999998    9999999999999999998754322 1   1223556899999999888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|+|++ |..||....      .......+.....                                      
T Consensus       184 i~slG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~~~~--------------------------------------  219 (256)
T cd05113         184 VWAFGVLMWEVYSLGKMPYERFN------NSETVEKVSQGLR--------------------------------------  219 (256)
T ss_pred             HHHHHHHHHHHhcCCCCCcCcCC------HHHHHHHHhcCCC--------------------------------------
Confidence            9999999999998 999986433      1122221111000                                      


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                         ...+...+..+.+++.+||+.||.+|||+.+++.+
T Consensus       220 ---~~~~~~~~~~~~~li~~cl~~~p~~Rp~~~~ll~~  254 (256)
T cd05113         220 ---LYRPHLASEKVYAIMYSCWHEKAEERPTFQQLLSS  254 (256)
T ss_pred             ---CCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHh
Confidence               01112235788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Bruton's tyrosine kinase (Btk) and Bone marrow kinase on the X chromosome (Bmx); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Btk and Bmx (also named Etk) are members of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds

>cd05092 PTKc_TrkA Catalytic domain of the Protein Tyrosine Kinase, Tropomyosin Related Kinase A

Probab=99.95  E-value=1e-27  Score=215.68  Aligned_cols=218  Identities=13%  Similarity=0.115  Sum_probs=160.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      .+..+++|.+.. ........+.++.+....  +.+.+++....... .....|+||||+.+|+|.+++...        
T Consensus        34 ~~~~~~~k~~~~-~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~  109 (280)
T cd05092          34 DKMLVAVKALKE-ASESARQDFQREAELLTV--LQHQHIVRFYGVCT-EGRPLLMVFEYMRHGDLNRFLRSHGPDAKILA  109 (280)
T ss_pred             CceEEEEEecCc-CCHHHHHHHHHHHHHHhc--CCCCCCceEEEEEe-cCCceEEEEecCCCCCHHHHHHhcCcchhhhc
Confidence            344567777654 334455667777666555  35666666554333 345679999999999999987643        


Q ss_pred             -------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCC
Q 045353           93 -------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQ  156 (358)
Q Consensus        93 -------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~  156 (358)
                             ..+.+..+..++.+++.++.|+|+.+++|+    +|||+++++.+||+|||++......     .....+++.
T Consensus       110 ~~~~~~~~~l~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~  189 (280)
T cd05092         110 GGEDVAPGQLTLGQMLAIASQIASGMVYLASLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPIR  189 (280)
T ss_pred             ccccCCccccCHHHHHHHHHHHHHHHHHHHHCCeecccccHhhEEEcCCCCEEECCCCceeEcCCCceeecCCCcccccc
Confidence                   236778889999999999999999999999    9999999999999999999754322     122345678


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |+|||++.+..++.++|||||||++|+|++ |.+||....      ..+.+..+..  +.                    
T Consensus       190 y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~--------------------  241 (280)
T cd05092         190 WMPPESILYRKFTTESDIWSFGVVLWEIFTYGKQPWYQLS------NTEAIECITQ--GR--------------------  241 (280)
T ss_pred             ccCHHHhccCCcCchhhHHHHHHHHHHHHcCCCCCCccCC------HHHHHHHHHc--Cc--------------------
Confidence            999999999889999999999999999998 899985432      1121111110  00                    


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                         ....+..+++.+.+||.+||+.||.+|||+.++++
T Consensus       242 -------------------~~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~l~~  276 (280)
T cd05092         242 -------------------ELERPRTCPPEVYAIMQGCWQREPQQRMVIKDIHS  276 (280)
T ss_pred             -------------------cCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                               01122334577889999999999999999999874

Protein Tyrosine Kinase (PTK) family; Tropomyosin Related Kinase A (TrkA); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. TrkA is a member of the Trk subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular region with arrays of leucine-rich motifs flanked by two cysteine-rich clusters followed by two immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. Binding of TrkA to its ligand, nerve growth factor (NGF), results in receptor oligomerization and activation of the catalytic domain. TrkA is expressed mainly in neural-crest-derived sensory

>cd05068 PTKc_Frk_like Catalytic domain of Fyn-related kinase-like Protein Tyrosine Kinases

Probab=99.95  E-value=1e-27  Score=213.35  Aligned_cols=220  Identities=16%  Similarity=0.182  Sum_probs=162.6

Q ss_pred             ccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--cc
Q 045353           18 VTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VN   95 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~   95 (358)
                      +...+..+++|.+...-.  ..+.+.++.+...+.  .+.+++...... ......|+||||+.|++|.+++....  .+
T Consensus        26 ~~~~~~~v~iK~~~~~~~--~~~~~~~e~~~l~~l--~h~~i~~~~~~~-~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~  100 (261)
T cd05068          26 LWNNTTPVAVKTLKPGTM--DPKDFLAEAQIMKKL--RHPKLIQLYAVC-TLEEPIYIVTELMKYGSLLEYLQGGAGRAL  100 (261)
T ss_pred             EecCCeEEEEEeeCCCcc--cHHHHHHHHHHHHHC--CCCCccceeEEE-ecCCCeeeeeecccCCcHHHHHhccCCCCC
Confidence            344556788888765432  234566666655553  456666555433 33467899999999999999886543  57


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCcc---CCCcchhHHHhCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQ---TRQYRCPEVLLGSK  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~g---t~~Y~aPE~l~~~~  167 (358)
                      ++.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++...... .....|   +..|+|||++.+..
T Consensus       101 ~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  180 (261)
T cd05068         101 KLPQLIDMAAQVASGMAYLEAQNYIHRDLAARNVLVGENNICKVADFGLARVIKEDIYEAREGAKFPIKWTAPEAALYNR  180 (261)
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCeeeccCCcceEEEcCCCCEEECCcceEEEccCCcccccCCCcCceeccCccccccCC
Confidence            788999999999999999999999988    9999999999999999999765432 112223   35799999999888


Q ss_pred             CCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++ |+.||.+..      ....+..+.....                                
T Consensus       181 ~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~~~~~--------------------------------  222 (261)
T cd05068         181 FSIKSDVWSFGILLTEIVTYGRMPYPGMT------NAEVLQQVDQGYR--------------------------------  222 (261)
T ss_pred             CCchhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHcCCC--------------------------------
Confidence            9999999999999999999 999996543      2222222211100                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                               ...+...+..+.+++.+||..||.+|||+.++++
T Consensus       223 ---------~~~~~~~~~~~~~li~~~l~~~P~~Rp~~~~l~~  256 (261)
T cd05068         223 ---------MPCPPGCPKELYDIMLDCWKEDPDDRPTFETLQW  256 (261)
T ss_pred             ---------CCCCCcCCHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                     0112234578899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Human Fyn-related kinase (Frk) and similar proteins; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Frk and Srk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins a

>cd05148 PTKc_Srm_Brk Catalytic domain of the Protein Tyrosine Kinases, Srm and Brk

Probab=99.95  E-value=1.5e-27  Score=212.22  Aligned_cols=220  Identities=16%  Similarity=0.217  Sum_probs=162.8

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .+.+..+++|++...-... ...+.++......  +.+++++....... .....|+||||++||+|.+++...  ..+.
T Consensus        27 ~~~~~~~~~k~~~~~~~~~-~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  102 (261)
T cd05148          27 WKNRVRVAIKILKSDDLLK-QQDFQKEVQALKR--LRHKHLISLFAVCS-VGEPVYIITELMEKGSLLAFLRSPEGQVLP  102 (261)
T ss_pred             ecCCCcEEEEeccccchhh-HHHHHHHHHHHhc--CCCcchhheeeeEe-cCCCeEEEEeecccCCHHHHHhcCCCCCCC
Confidence            3446778888887654322 3345555555444  34566666544433 345689999999999999988753  3467


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC---CCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF---TNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~---~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..++..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++.......   ....++..|+|||++.+..++
T Consensus       103 ~~~~~~~~~~i~~al~~lH~~~i~h~dl~~~nilv~~~~~~kl~d~g~~~~~~~~~~~~~~~~~~~~~~~PE~~~~~~~~  182 (261)
T cd05148         103 VASLIDMACQVAEGMAYLEEQNSIHRDLAARNILVGEDLVCKVADFGLARLIKEDVYLSSDKKIPYKWTAPEAASHGTFS  182 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccccCcceEEEcCCceEEEccccchhhcCCccccccCCCCceEecCHHHHccCCCC
Confidence            88899999999999999999999998    99999999999999999996654321   223456789999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||.+..      ....+..+....                                   
T Consensus       183 ~~~DiwslG~~l~~l~~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------  221 (261)
T cd05148         183 TKSDVWSFGILLYEMFTYGQVPYPGMN------NHEVYDQITAGY-----------------------------------  221 (261)
T ss_pred             chhhHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHHhCC-----------------------------------
Confidence            99999999999999998 899996543      222222222100                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+++.+||+.||.+|||+.++++
T Consensus       222 ------~~~~~~~~~~~~~~~i~~~l~~~p~~Rpt~~~l~~  256 (261)
T cd05148         222 ------RMPCPAKCPQEIYKIMLECWAAEPEDRPSFKALRE  256 (261)
T ss_pred             ------cCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                  01122344678899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Src-related kinase lacking C-terminal regulatory tyrosine and N-terminal myristylation sites (Srm) and breast tumor kinase (Brk, also called protein tyrosine kinase 6); catalytic (c) domains. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Srm and Brk are a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase dom

>cd08222 STKc_Nek11 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 11

Probab=99.95  E-value=1.6e-27  Score=211.84  Aligned_cols=219  Identities=19%  Similarity=0.259  Sum_probs=159.5

Q ss_pred             ccccccccC----ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc----ccccc
Q 045353           24 SKENKSLYG----DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN----DSVVN   95 (358)
Q Consensus        24 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~----~~~~~   95 (358)
                      .+++|++..    .+.........++......  ..|++++........ ....++||||+.|++|.+++.    ....+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~  103 (260)
T cd08222          27 EERLKVLKEIPVGELNPNETVQANQEAQLLSK--LDHPAIVKFHASFLE-RDAFCIITEYCEGRDLDCKLEELKHTGKTL  103 (260)
T ss_pred             cceEEEeccccccccCcchHHHHHHHHHHHHh--CCCCcHHHHHHHHhc-CCceEEEEEeCCCCCHHHHHHHHhhccccc
Confidence            344455443    3333344444455444443  456666665554433 346889999999999998775    23457


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++.++..++.+++.++.++|+.+++|+    +||++++ +.+||+|||++......   .....|++.|+|||.+.+..+
T Consensus       104 ~~~~~~~~~~~l~~~l~~lH~~~i~h~~l~~~nili~~-~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~  182 (260)
T cd08222         104 SENQVCEWFIQLLLGVHYMHQRRILHRDLKAKNIFLKN-NLLKIGDFGVSRLLMGSCDLATTFTGTPYYMSPEALKHQGY  182 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCccccCCChhheEeec-CCEeecccCceeecCCCcccccCCCCCcCccCHHHHccCCC
Confidence            888999999999999999999999998    9999975 56999999998765322   223467889999999988888


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|+||+|+++|+|++|..||....         ....+..+....                                
T Consensus       183 ~~~~Dv~slG~~~~~l~~~~~~~~~~~---------~~~~~~~~~~~~--------------------------------  221 (260)
T cd08222         183 DSKSDIWSLGCILYEMCCLAHAFEGQN---------FLSVVLRIVEGP--------------------------------  221 (260)
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCcc---------HHHHHHHHHcCC--------------------------------
Confidence            999999999999999999999996332         111111111110                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                            ....+...+..+.++|.+||..||++||++.++++||||
T Consensus       222 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~il~~~~~  260 (260)
T cd08222         222 ------TPSLPETYSRQLNSIMQSMLNKDPSLRPSAAEILRNPFI  260 (260)
T ss_pred             ------CCCCcchhcHHHHHHHHHHhcCChhhCcCHHHHhhCCCC
Confidence                  001223446788999999999999999999999999997

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 11 (Nek11) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek11 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek11 is involved, through direct phosphorylation, in regulating the degradation of Cdc25A (Cell Division Cycle 25 homolog A), which plays a role in cell cycle progression and in activating cyclin dependent kinases. Nek11 is activated by CHK1 (CHeckpoint Kinase 1) and may be involved in the G2/M check

>cd05066 PTKc_EphR_A Catalytic domain of the Protein Tyrosine Kinases, Class EphA Ephrin Receptors

Probab=99.95  E-value=1e-27  Score=214.20  Aligned_cols=218  Identities=16%  Similarity=0.191  Sum_probs=164.7

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      +..+|+|.+.........+.+.++.....+  ..|++++....... .+...|+||||++||+|.+++... ..++..++
T Consensus        32 ~~~~~ik~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~  108 (267)
T cd05066          32 EIPVAIKTLKAGYTEKQRRDFLSEASIMGQ--FDHPNIIHLEGVVT-KSKPVMIVTEYMENGSLDAFLRKHDGQFTVIQL  108 (267)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHHHHHh--CCCCCcceEEEEEe-cCCccEEEEEcCCCCCHHHHHHhcCCCCCHHHH
Confidence            346889988877666666677776665555  35777777655543 346789999999999999988754 45678889


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCCCCc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++.......      ....++..|+|||++.+..++.
T Consensus       109 ~~i~~~i~~~l~~lH~~~i~h~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~  188 (267)
T cd05066         109 VGMLRGIASGMKYLSDMGYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEAAYTTRGGKIPIRWTAPEAIAYRKFTS  188 (267)
T ss_pred             HHHHHHHHHHHHHHHHCCEeehhhchhcEEECCCCeEEeCCCCcccccccccceeeecCCCccceeecCHhHhccCccCc
Confidence            9999999999999999999998    99999999999999999997654321      1122356799999999888999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|+|||||++|++++ |..||....      ..+....+.+...                                   
T Consensus       189 ~~Dv~slG~~l~ell~~g~~p~~~~~------~~~~~~~~~~~~~-----------------------------------  227 (267)
T cd05066         189 ASDVWSYGIVMWEVMSYGERPYWEMS------NQDVIKAIEEGYR-----------------------------------  227 (267)
T ss_pred             hhhhHHHHHHHHHHhcCCCCCcccCC------HHHHHHHHhCCCc-----------------------------------
Confidence            9999999999999886 999996433      1122222211000                                   


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ...+...+..+.+++.+||+.+|.+|||+.++++
T Consensus       228 ------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  261 (267)
T cd05066         228 ------LPAPMDCPAALHQLMLDCWQKDRNERPKFEQIVS  261 (267)
T ss_pred             ------CCCCCCCCHHHHHHHHHHcccCchhCCCHHHHHH
Confidence                  0112233567889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; most class EphA receptors including EphA3, EphA4, EphA5, and EphA7, but excluding EphA1, EphA2 and EphA10; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). In general, class EphA receptors bind GPI-anchored ephrin-A ligands. There are ten vertebrate EphA receptors (EphA1-10), which display promiscuous interactions with six ephrin-A ligands. One exception is EphA4, which also binds ephrins-B2/B3. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellul

>cd05042 PTKc_Aatyk Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases

Probab=99.95  E-value=1.6e-27  Score=213.07  Aligned_cols=222  Identities=14%  Similarity=0.123  Sum_probs=155.7

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-----ccC
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-----VNN   96 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-----~~~   96 (358)
                      ...+++|.+...........+.++......  ..|++++....... .....|+||||+++|+|.+++....     ...
T Consensus        22 ~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~--l~h~nii~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~   98 (269)
T cd05042          22 KARVVVKELRASATPDEQLLFLQEVQPYRE--LNHPNVLQCLGQCI-ESIPYLLVLEFCPLGDLKNYLRSNRGMVAQMAQ   98 (269)
T ss_pred             CeEEEEeecCccCChHHHHHHHHHHHHHHh--CCCCCcceEEEEEC-CCCceEEEEEeCCCCcHHHHHHhcccccccccc
Confidence            345777877665555555555666555443  46777777665443 3457899999999999999886532     234


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhC--
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLG--  165 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~--  165 (358)
                      +..+..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||++......     .....++..|+|||++..  
T Consensus        99 ~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  178 (269)
T cd05042          99 KDVLQRMACEVASGLLWLHQADFIHSDLALRNCQLTADLSVKIGDYGLALEQYPEDYYITKDCHAVPLRWLAPELVEIRG  178 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCEecccccHhheEecCCCcEEEeccccccccccchheeccCCCCCcccccCHHHHhhcc
Confidence            56778899999999999999999999    9999999999999999998643211     123345678999999853  


Q ss_pred             -----CCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          166 -----SKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       166 -----~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                           ..++.++||||+||++|+|++ |..||....      +.+.+..+.........                     
T Consensus       179 ~~~~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~~~~~~~~---------------------  231 (269)
T cd05042         179 QDLLPKDQTKKSNIWSLGVTMWELFTAADQPYPDLS------DEQVLKQVVREQDIKLP---------------------  231 (269)
T ss_pred             ccccccccchhhHHHHHHHHHHHHHhCCCCCCCcCC------HHHHHHHHhhccCccCC---------------------
Confidence                 346889999999999999998 778886432      22222222111110000                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                     ....+...+..+.+++..|+ .||++|||+++|++
T Consensus       232 ---------------~~~~~~~~~~~~~~~~~~~~-~dp~~Rpt~~~v~~  265 (269)
T cd05042         232 ---------------KPQLDLKYSDRWYEVMQFCW-LDPETRPTAEEVHE  265 (269)
T ss_pred             ---------------CCcccccCCHHHHHHHHHHh-cCcccccCHHHHHH
Confidence                           00112234567778888888 59999999999875

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase (Aatyk) subfamily; catalytic (c) domain. The Aatyk subfamily is also referred to as the lemur tyrosine kinase (Lmtk) subfamily. It consists of Aatyk1 (Lmtk1), Aatyk2 (Lmtk2, Brek), Aatyk3 (Lmtk3), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk proteins are mostly receptor tyr kinases (RTKs) containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 does not contain a transmembrane segment and is a cytoplasmic (or nonreceptor) kinase. Aatyk proteins are classified as tyr kina

>cd06635 STKc_TAO1 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 1

Probab=99.95  E-value=1.5e-27  Score=218.58  Aligned_cols=226  Identities=19%  Similarity=0.176  Sum_probs=164.4

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .+|..+++|.+.....  ....+.+.++.+....  +.+++++....... .+...|+||||+.| +|.+.+. ....+.
T Consensus        48 ~~~~~valK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~g-~l~~~~~~~~~~l~  123 (317)
T cd06635          48 RTNEVVAIKKMSYSGKQSNEKWQDIIKEVKFLQR--IKHPNSIEYKGCYL-REHTAWLVMEYCLG-SASDLLEVHKKPLQ  123 (317)
T ss_pred             CCCcEEEEEEEecCCCCchHHHHHHHHHHHHHHh--CCCCCEEEEEEEEe-eCCeEEEEEeCCCC-CHHHHHHHhcCCCC
Confidence            3566788888765432  2333456666665555  35666666554433 24567999999986 5555553 344578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC---CCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG---SKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~---~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++..... .....|++.|+|||++.+   ..++
T Consensus       124 ~~~~~~i~~~i~~~l~~lH~~~i~H~dL~p~Nil~~~~~~~kl~dfg~~~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~~  202 (317)
T cd06635         124 EVEIAAITHGALQGLAYLHSHNMIHRDIKAGNILLTEPGQVKLADFGSASIASP-ANSFVGTPYWMAPEVILAMDEGQYD  202 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCCcccEEECCCCCEEEecCCCccccCC-cccccCCccccChhhhhcCCCCCCC
Confidence            88999999999999999999999998    999999999999999999865443 234578999999999853   4588


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|..||....      ....+..+... +.+                                 
T Consensus       203 ~~~Dv~slGvil~el~~g~~p~~~~~------~~~~~~~~~~~-~~~---------------------------------  242 (317)
T cd06635         203 GKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQN-ESP---------------------------------  242 (317)
T ss_pred             ccccHHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHhc-cCC---------------------------------
Confidence            99999999999999999999986432      11112111110 000                                 


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            .......+..+.+||.+||+.+|.+|||+.++++|+|+...
T Consensus       243 ------~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~il~~~~~~~~  283 (317)
T cd06635         243 ------TLQSNEWSDYFRNFVDSCLQKIPQDRPTSEELLKHMFVLRE  283 (317)
T ss_pred             ------CCCCccccHHHHHHHHHHccCCcccCcCHHHHHhChhhhcc
Confidence                  00112235678999999999999999999999999999754

Serine/threonine kinases (STKs), thousand-and-one amino acids 1 (TAO1) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. TAO1 is sometimes referred to as prostate-derived sterile 20-like kinase 2 (PSK2). TAO1 activates the p38 MAPK through direct interaction with and activation of MEK3. TAO1 is highly expressed in the brain and may play a role in neuron

>cd05069 PTKc_Yes Catalytic domain of the Protein Tyrosine Kinase, Yes

Probab=99.95  E-value=1.9e-27  Score=211.59  Aligned_cols=217  Identities=17%  Similarity=0.191  Sum_probs=158.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      ..+..+++|.+.....  ...++.++.+....  ..+.+++......  .....|+||||+.+|+|.+++...  ....+
T Consensus        28 ~~~~~~~lK~~~~~~~--~~~~~~~E~~~l~~--l~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~  101 (260)
T cd05069          28 NGTTKVAIKTLKPGTM--MPEAFLQEAQIMKK--LRHDKLVPLYAVV--SEEPIYIVTEFMGKGSLLDFLKEGDGKYLKL  101 (260)
T ss_pred             cCCceEEEEEcccCCc--cHHHHHHHHHHHHh--CCCCCeeeEEEEE--cCCCcEEEEEcCCCCCHHHHHhhCCCCCCCH
Confidence            3444678887765432  23455666555554  3455555544433  235679999999999999988643  23677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC----CCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF----TNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~----~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +||++++++.++|+|||++.......    ....++..|+|||.+.+..++
T Consensus       102 ~~~~~~~~~l~~al~~lH~~~i~H~dl~~~Nill~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~Pe~~~~~~~~  181 (260)
T cd05069         102 PQLVDMAAQIADGMAYIERMNYIHRDLRAANILVGDNLVCKIADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFT  181 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEeecccCcceEEEcCCCeEEECCCccceEccCCcccccCCCccchhhCCHHHhccCCcC
Confidence            7888999999999999999999998    99999999999999999997653221    123456789999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||.+..      .......+..   ..                                
T Consensus       182 ~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------  220 (260)
T cd05069         182 IKSDVWSFGILLTELVTKGRVPYPGMV------NREVLEQVER---GY--------------------------------  220 (260)
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc---CC--------------------------------
Confidence            99999999999999999 899996433      2222222111   00                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+|+.+||..||++|||++++++
T Consensus       221 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  255 (260)
T cd05069         221 ------RMPCPQGCPESLHELMKLCWKKDPDERPTFEYIQS  255 (260)
T ss_pred             ------CCCCCcccCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                  00112334678899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Yes kinase; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pathways that regulate cytokine an

>smart00750 KIND kinase non-catalytic C-lobe domain

Probab=99.95  E-value=3.6e-28  Score=203.37  Aligned_cols=167  Identities=19%  Similarity=0.231  Sum_probs=126.8

Q ss_pred             CCccccccc-ccccChhhhhHHHHhhhhccccccCCCCCCcccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhH
Q 045353           83 VSVEERQND-SVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPE  161 (358)
Q Consensus        83 g~L~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE  161 (358)
                      |+|.+++.. ...+++.++..++.|++.|+.|+|+.+  +++|||++.++.+|+  ||++......  ...||+.|+|||
T Consensus         1 GsL~~~l~~~~~~l~~~~~~~i~~qi~~~L~~lH~~~--kp~Nil~~~~~~~~~--fG~~~~~~~~--~~~g~~~y~aPE   74 (176)
T smart00750        1 VSLADILEVRGRPLNEEEIWAVCLQCLRALRELHRQA--KSGNILLTWDGLLKL--DGSVAFKTPE--QSRVDPYFMAPE   74 (176)
T ss_pred             CcHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcC--CcccEeEcCccceee--ccceEeeccc--cCCCcccccChH
Confidence            678888875 345899999999999999999999998  789999999999999  9999776543  237899999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..|+.++||||+||++|+|++|+.||.....     ....+..+...   .+....                    
T Consensus        75 ~~~~~~~~~~~DiwSlG~il~elltg~~p~~~~~~-----~~~~~~~~~~~---~~~~~~--------------------  126 (176)
T smart00750       75 VIQGQSYTEKADIYSLGITLYEALDYELPYNEERE-----LSAILEILLNG---MPADDP--------------------  126 (176)
T ss_pred             HhcCCCCcchhhHHHHHHHHHHHHhCCCCccccch-----hcHHHHHHHHH---hccCCc--------------------
Confidence            99999999999999999999999999999954321     01111111111   000000                    


Q ss_pred             hccCCcchhhHHhhhcCChhhHH--HHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAK--DMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            .      ....+...+.  .+.++|.+||..||.+|||+.|+++|+|+..
T Consensus       127 ------~------~~~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~ll~~~~~~~  170 (176)
T smart00750      127 ------R------DRSNLESVSAARSFADFMRVCASRLPQRREAANHYLAHCRALF  170 (176)
T ss_pred             ------c------ccccHHHHHhhhhHHHHHHHHHhcccccccCHHHHHHHHHHHH
Confidence                  0      0000111222  6899999999999999999999999999863

It is an interaction domain identified as being similar to the C-terminal protein kinase catalytic fold (C lobe). Its presence at the N terminus of signalling proteins and the absence of the active-site residues in the catalytic and activation loops suggest that it folds independently and is likely to be non-catalytic. The occurrence of KIND only in metazoa implies that it has evolved from the catalytic protein kinase domain into an interaction domain possibly by keeping the substrate-binding features

>cd05076 PTK_Tyk2_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinase, Tyrosine kinase 2

Probab=99.95  E-value=7.6e-28  Score=215.93  Aligned_cols=215  Identities=17%  Similarity=0.159  Sum_probs=155.7

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~  100 (358)
                      +..|++|.+..... .....+.+++....+  ..|++++.+..... .....|+||||++||+|..++.. ...+++..+
T Consensus        44 ~~~v~~k~~~~~~~-~~~~~~~~~~~~~~~--l~h~niv~~~~~~~-~~~~~~lv~ey~~~g~L~~~l~~~~~~~~~~~~  119 (274)
T cd05076          44 ELRVVLKVLDPSHR-DIALAFFETASLMSQ--VSHIHLAFVHGVCV-RGSENIMVEEFVEHGPLDVCLRKEKGRVPVAWK  119 (274)
T ss_pred             eeeEEEEecChHHH-HHHHHHHHHHHHHhc--CCCCCeeeEEEEEE-eCCceEEEEecCCCCcHHHHHHhcCCCCCHHHH
Confidence            34678888865432 222334444443333  46778887776543 34578999999999999988864 456778888


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCC-------cEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCC
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-------QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKY  168 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-------~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~  168 (358)
                      ..++.+++.|+.|+|+.+++|+    +|||++..+       .+||+|||++..... .....++..|+|||.+.+ ..+
T Consensus       120 ~~i~~qi~~~l~~lH~~~iiH~dlkp~Nill~~~~~~~~~~~~~kl~d~g~~~~~~~-~~~~~~~~~~~aPe~~~~~~~~  198 (274)
T cd05076         120 ITVAQQLASALSYLEDKNLVHGNVCAKNILLARLGLAEGTSPFIKLSDPGVSFTALS-REERVERIPWIAPECVPGGNSL  198 (274)
T ss_pred             HHHHHHHHHHHHHHHcCCccCCCCCcccEEEeccCcccCccceeeecCCcccccccc-ccccccCCcccCchhhcCCCCC
Confidence            9999999999999999999998    999997643       489999999854422 233467889999999876 458


Q ss_pred             CcchhhhhhhHHHHhh-hcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFEL-ATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~el-l~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+| ++|..||.....      .... .....                                   
T Consensus       199 ~~~~Dv~slG~~l~el~~~g~~p~~~~~~------~~~~-~~~~~-----------------------------------  236 (274)
T cd05076         199 STAADKWSFGTTLLEICFDGEVPLKERTP------SEKE-RFYEK-----------------------------------  236 (274)
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCccccCh------HHHH-HHHHh-----------------------------------
Confidence            9999999999999998 478999864331      1110 11000                                   


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                             ....+....+.+.+||.+||+.+|++|||+.++|++
T Consensus       237 -------~~~~~~~~~~~~~~li~~cl~~~p~~Rps~~~il~~  272 (274)
T cd05076         237 -------KHRLPEPSCKELATLISQCLTYEPTQRPSFRTILRD  272 (274)
T ss_pred             -------ccCCCCCCChHHHHHHHHHcccChhhCcCHHHHHHh
Confidence                   011122234578899999999999999999999875

Protein Tyrosine Kinase (PTK) family; Tyrosine kinase 2 (Tyk2); pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyk2 is a member of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity of the C-terminal catalyt

>cd05111 PTK_HER3 Pseudokinase domain of the Protein Tyrosine Kinase, HER3

Probab=99.95  E-value=2.1e-27  Score=213.66  Aligned_cols=214  Identities=13%  Similarity=0.114  Sum_probs=155.6

Q ss_pred             cccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhHH
Q 045353           25 KENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDNE  103 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~  103 (358)
                      +++|............++..+....+.  ..|++++.......  ....+++|||+.+|+|.+++.. ...+++..+..+
T Consensus        39 ~~~k~~~~~~~~~~~~~~~~~~~~l~~--l~h~~iv~~~~~~~--~~~~~~i~e~~~~gsL~~~l~~~~~~~~~~~~~~i  114 (279)
T cd05111          39 VAIKTIQDRSGRQTFQEITDHMLAMGS--LDHAYIVRLLGICP--GASLQLVTQLSPLGSLLDHVRQHRDSLDPQRLLNW  114 (279)
T ss_pred             EEEeecccccchHHHHHHHHHHHHHhc--CCCCCcceEEEEEC--CCccEEEEEeCCCCcHHHHHHhcccCCCHHHHHHH
Confidence            566766544333333334433333333  45667777665433  3557899999999999999865 345788899999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +.|++.++.|+|+.+++|+    +|||++.++.+||+|||+++.....     .....++..|+|||++.+..++.++||
T Consensus       115 ~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~pE~~~~~~~~~~~Dv  194 (279)
T cd05111         115 CVQIAKGMYYLEEHRMVHRNLAARNILLKSDSIVQIADFGVADLLYPDDKKYFYSEHKTPIKWMALESILFGRYTHQSDV  194 (279)
T ss_pred             HHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEEcCCccceeccCCCcccccCCCCCcccccCHHHhccCCcCchhhH
Confidence            9999999999999999998    9999999999999999999764321     223456778999999998889999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++|++++ |..||.+..       ...+..+......+                                     
T Consensus       195 ~slG~il~el~t~g~~p~~~~~-------~~~~~~~~~~~~~~-------------------------------------  230 (279)
T cd05111         195 WSYGVTVWEMMSYGAEPYAGMR-------PHEVPDLLEKGERL-------------------------------------  230 (279)
T ss_pred             HHHHHHHHHHHcCCCCCCCCCC-------HHHHHHHHHCCCcC-------------------------------------
Confidence            999999999998 999996432       11111111100000                                     


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                         ..+...+..+.+++.+||..||++|||+.|+++
T Consensus       231 ---~~~~~~~~~~~~li~~c~~~~p~~Rps~~el~~  263 (279)
T cd05111         231 ---AQPQICTIDVYMVMVKCWMIDENVRPTFKELAN  263 (279)
T ss_pred             ---CCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence               011123456788999999999999999999876

Protein Tyrosine Kinase (PTK) family; HER3 (ErbB3); pseudokinase domain. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER3 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr r

>cd05037 PTK_Jak_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.95  E-value=1e-27  Score=212.80  Aligned_cols=210  Identities=16%  Similarity=0.133  Sum_probs=156.1

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~~~  102 (358)
                      .+++|.+......  ...+.++......  ..|++++........  ...|+||||+.+|+|.+++.... .++...+..
T Consensus        32 ~v~~k~~~~~~~~--~~~~~~e~~~l~~--l~h~~i~~~~~~~~~--~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  105 (259)
T cd05037          32 SVVLKVLGSDHRD--SLAFFETASLMSQ--LSHKHLVKLYGVCVR--DENIMVEEYVKFGPLDVFLHREKNNVSLHWKLD  105 (259)
T ss_pred             eeeeeccccchhh--HHHHHHHHHHHHc--CCCcchhheeeEEec--CCcEEEEEcCCCCcHHHHHHhhccCCCHHHHHH
Confidence            4566666544332  5566666655544  366777766655444  56799999999999999987655 678888999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCC-------cEEEEecCCceecCCCCCCCccCCCcchhHHHhCC--CCC
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDV-------QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS--KYS  169 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-------~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~--~~~  169 (358)
                      ++.+++.++.++|+.+++|+    +|||++.++       .+||+|||++..... .....++..|+|||++.+.  .++
T Consensus       106 ~~~~i~~~l~~LH~~~i~H~dlkp~Nill~~~~~~~~~~~~~kl~Dfg~a~~~~~-~~~~~~~~~y~aPE~~~~~~~~~~  184 (259)
T cd05037         106 VAKQLASALHYLEDKKLVHGNVCGKNILVARYGLNEGYVPFIKLSDPGIPITVLS-REERVERIPWIAPECIRNGQASLT  184 (259)
T ss_pred             HHHHHHHHHHHHhhCCeecccCccceEEEecCccccCCceeEEeCCCCccccccc-ccccccCCCccChhhhcCCCCCcc
Confidence            99999999999999999999    999999887       799999999976543 2344677889999999887  689


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||......      ....... .                                    
T Consensus       185 ~~~Di~slG~~~~~l~~~~~~p~~~~~~~------~~~~~~~-~------------------------------------  221 (259)
T cd05037         185 IAADKWSFGTTLLEICSNGEEPLSTLSSS------EKERFYQ-D------------------------------------  221 (259)
T ss_pred             hhhHHHHHHHHHHHHHhCCCCCcccCCch------hHHHHHh-c------------------------------------
Confidence            99999999999999999 57777543210      0000000 0                                    


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+......+.+||.+||..+|.+|||+.++++
T Consensus       222 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~il~  256 (259)
T cd05037         222 ------QHRLPMPDCAELANLINQCWTYDPTKRPSFRAILR  256 (259)
T ss_pred             ------CCCCCCCCchHHHHHHHHHhccChhhCCCHHHHHH
Confidence                  00011111267889999999999999999999986

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; pseudokinase domain (repeat1). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the ki

>cd05100 PTKc_FGFR3 Catalytic domain of the Protein Tyrosine Kinase, Fibroblast Growth Factor Receptor 3

Probab=99.95  E-value=1.3e-27  Score=220.60  Aligned_cols=219  Identities=18%  Similarity=0.187  Sum_probs=163.3

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----------   92 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----------   92 (358)
                      .+++|.+...........+.++.+...+. ..+++++....... ....+|++|||+.+|+|.+++...           
T Consensus        46 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~  123 (334)
T cd05100          46 TVAVKMLKDDATDKDLSDLVSEMEMMKMI-GKHKNIINLLGACT-QDGPLYVLVEYASKGNLREYLRARRPPGMDYSFDT  123 (334)
T ss_pred             eEEEEEcccccCHHHHHHHHHHHHHHHhh-cCCCCeeeeeEEEc-cCCceEEEEecCCCCcHHHHHHhcCCccccccccc
Confidence            57888887766565666777777665553 25667776665543 345789999999999999987532           


Q ss_pred             -----cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcc
Q 045353           93 -----VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYR  158 (358)
Q Consensus        93 -----~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~  158 (358)
                           ..+...++..++.|++.++.++|+.+++|+    +|||++.++.+||+|||+++.....     .....++..|+
T Consensus       124 ~~~~~~~l~~~~~~~~~~qi~~al~~LH~~givH~dlkp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~  203 (334)
T cd05100         124 CKLPEEQLTFKDLVSCAYQVARGMEYLASQKCIHRDLAARNVLVTEDNVMKIADFGLARDVHNIDYYKKTTNGRLPVKWM  203 (334)
T ss_pred             ccCccccCCHHHHHHHHHHHHHHHHHHHHCCeeccccccceEEEcCCCcEEECCcccceecccccccccccCCCcCceEc
Confidence                 234556778889999999999999999998    9999999999999999999765432     12223456799


Q ss_pred             hhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          159 CPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       159 aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      |||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+..   ..                     
T Consensus       204 aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~---~~---------------------  253 (334)
T cd05100         204 APEALFDRVYTHQSDVWSFGVLLWEIFTLGGSPYPGIP------VEELFKLLKE---GH---------------------  253 (334)
T ss_pred             CHHHhccCCcCchhhhHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc---CC---------------------
Confidence            9999999889999999999999999998 888886433      1222111110   00                     


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                                       ....+...+..+.+|+.+||+.+|.+|||+.|++++-
T Consensus       254 -----------------~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~ell~~l  290 (334)
T cd05100         254 -----------------RMDKPANCTHELYMIMRECWHAVPSQRPTFKQLVEDL  290 (334)
T ss_pred             -----------------CCCCCCCCCHHHHHHHHHHcccChhhCcCHHHHHHHH
Confidence                             0112233456888999999999999999999998863

Protein Tyrosine Kinase (PTK) family; Fibroblast Growth Factor Receptor 3 (FGFR3); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. FGFR3 is part of the FGFR subfamily, which are receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with three immunoglobulin-like domains, a transmembrane segment, and an intracellular catalytic domain. The binding of FGFRs to their ligands, the FGFs, results in receptor dimerization and activation, and intracellular signaling. The binding of FGFs to FGFRs is promiscuous, in that a receptor may be activated by several ligands and a ligand may bind to

>cd08229 STKc_Nek7 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 7

Probab=99.95  E-value=1.8e-27  Score=212.43  Aligned_cols=223  Identities=13%  Similarity=0.100  Sum_probs=163.1

Q ss_pred             ccCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----cc
Q 045353           20 ESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~   93 (358)
                      .+|..+++|.+...  ........+.++.+....  ..+++++....... .....++||||++|++|.+++..    ..
T Consensus        25 ~~~~~~~vK~~~~~~~~~~~~~~~~~~e~~~l~~--~~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~  101 (267)
T cd08229          25 LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQ--LNHPNVIKYYASFI-EDNELNIVLELADAGDLSRMIKHFKKQKR  101 (267)
T ss_pred             CCCceEEEEeeeehhhhhHHHHHHHHHHHHHHHH--ccCCchhhhhheeE-eCCeEEEEEEecCCCCHHHHHHHhhccCC
Confidence            46778888876542  223334556666555554  35666666554433 34678999999999999987752    34


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+++.++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....|+..|+|||++.+.
T Consensus       102 ~~~~~~~~~~~~~i~~~l~~LH~~~i~H~dl~p~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~ape~~~~~  181 (267)
T cd08229         102 LIPEKTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  181 (267)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEECcchhhhccccCCcccccccCCcCccCHHHhcCC
Confidence            56788899999999999999999999998    9999999999999999998765432   2234789999999999988


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|+|||||++|+|++|..||.+....    .......+.. ...+                              
T Consensus       182 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~-~~~~------------------------------  226 (267)
T cd08229         182 GYNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCKKIEQ-CDYP------------------------------  226 (267)
T ss_pred             CccchhhHHHHHHHHHHHHhCCCCcccccch----HHHHhhhhhc-CCCC------------------------------
Confidence            8999999999999999999999999643210    0011111000 0000                              


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                               ...+...+..+.+||.+||..||.+|||+.++++
T Consensus       227 ---------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~~i~~  260 (267)
T cd08229         227 ---------PLPSDHYSEELRQLVNMCINPDPEKRPDITYVYD  260 (267)
T ss_pred             ---------CCCcccccHHHHHHHHHhcCCCcccCCCHHHHHH
Confidence                     0011234678999999999999999999997764

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 7 (Nek7) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek7 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek7 is required for mitotic spindle formation and cytokinesis. It is enriched in the centrosome and is critical for microtubule nucleation. Nek7 is activated by Nek9 during mitosis, and may regulate the p70 ribosomal S6 kinase.

>cd08224 STKc_Nek6_Nek7 Catalytic domain of the Protein Serine/Threonine Kinases, Never In Mitosis gene A-related kinase 6 and 7

Probab=99.95  E-value=2.7e-27  Score=211.07  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=164.5

Q ss_pred             cCcccccccccC--ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----ccc
Q 045353           21 SSASKENKSLYG--DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SVV   94 (358)
Q Consensus        21 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~~   94 (358)
                      +|..+++|....  .....+++++.++.+...+.  .+.+++........ ....|+||||++||+|..++..    ...
T Consensus        26 ~~~~~~ik~~~~~~~~~~~~~~~~~~ei~~l~~~--~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  102 (267)
T cd08224          26 DGRVVALKKVQIFEMMDAKARQDCLKEIDLLKQL--DHPNVIKYLASFIE-NNELNIVLELADAGDLSRMIKHFKKQKRL  102 (267)
T ss_pred             CCCEEEEEEeecccccchhhHHHHHHHHHHHHhC--CCCCeeeeeeeeec-CCeEEEEEecCCCCCHHHHHHHhcccCCC
Confidence            677888887753  33344567788887766663  45555555554433 4678999999999999987753    344


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +.+.++..++.+++.++.++|+.+++|+    +||+++.++.++|+|||++......   .....++..|+|||.+.+..
T Consensus       103 ~~~~~~~~~~~~l~~~l~~lh~~~i~h~dl~p~nil~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~y~apE~~~~~~  182 (267)
T cd08224         103 IPERTIWKYFVQLCSALEHMHSKRIMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENG  182 (267)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCEecCCcChhhEEECCCCcEEEeccceeeeccCCCcccceecCCccccCHHHhccCC
Confidence            6788999999999999999999999988    9999999999999999998765432   23346889999999999888


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++||||+||++|+|++|..||......    .......+..  +..                               
T Consensus       183 ~~~~~Di~slG~il~~l~~g~~p~~~~~~~----~~~~~~~~~~--~~~-------------------------------  225 (267)
T cd08224         183 YNFKSDIWSLGCLLYEMAALQSPFYGDKMN----LYSLCKKIEK--CDY-------------------------------  225 (267)
T ss_pred             CCchhcHHHHHHHHHHHHHCCCCcccCCcc----HHHHHhhhhc--CCC-------------------------------
Confidence            999999999999999999999999643210    0011000000  000                               


Q ss_pred             chhhHHhhhcCC-hhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFN-ERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~-~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                              ...+ ...+..+.++|.+||..+|++|||+.++++
T Consensus       226 --------~~~~~~~~~~~~~~~i~~cl~~~p~~Rp~~~~il~  260 (267)
T cd08224         226 --------PPLPADHYSEELRDLVSRCINPDPEKRPDISYVLQ  260 (267)
T ss_pred             --------CCCChhhcCHHHHHHHHHHcCCCcccCCCHHHHHH
Confidence                    0011 134567889999999999999999999874

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 6 (Nek6) and Nek7 subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek6/7 subfamily is part of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. Nek6 and Nek7 are the shortest Neks, consisting only of the catalytic domain and a very short N-terminal extension. They show distinct expression patterns and both appear to be downstream substrates of Nek9. They are required for mitotic spindle formation and cytokinesis. They may a

>KOG1094 consensus Discoidin domain receptor DDR1 [Signal transduction mechanisms]

Probab=99.95  E-value=4.7e-28  Score=222.89  Aligned_cols=229  Identities=15%  Similarity=0.158  Sum_probs=181.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~~   98 (358)
                      .+.-||+|.|+++...+.++.+.+++|..+++  .+++++++..+....+ .+.++||||+.|+|.+|+....  .....
T Consensus       561 g~lkVAVK~Lr~~a~~~~r~~F~kEIkiLsqL--khPNIveLvGVC~~De-PicmI~EYmEnGDLnqFl~aheapt~~t~  637 (807)
T KOG1094|consen  561 GPLKVAVKILRPDATKNARNDFLKEIKILSRL--KHPNIVELLGVCVQDD-PLCMITEYMENGDLNQFLSAHELPTAETA  637 (807)
T ss_pred             CceEEEEeecCcccchhHHHHHHHHHHHHhcc--CCCCeeEEEeeeecCC-chHHHHHHHhcCcHHHHHHhccCcccccc
Confidence            35788999999999999999999999999995  8999999998876654 4678999999999999998652  34556


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-CCCCCC----ccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-KQFTND----IQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-~~~~~~----~gt~~Y~aPE~l~~~~~~  169 (358)
                      +...+..||.+|+.|+-+.+++||    .|+|++.++++||+|||+|+..- ..+...    +-...|||+|.+.-++++
T Consensus       638 ~~vsi~tqiasgmaYLes~nfVHrd~a~rNcLv~~e~~iKiadfgmsR~lysg~yy~vqgr~vlpiRwmawEsillgkFt  717 (807)
T KOG1094|consen  638 PGVSICTQIASGMAYLESLNFVHRDLATRNCLVDGEFTIKIADFGMSRNLYSGDYYRVQGRAVLPIRWMAWESILLGKFT  717 (807)
T ss_pred             hhHHHHHHHHHHHHHHHhhchhhccccccceeecCcccEEecCcccccccccCCceeeecceeeeeeehhHHHHHhcccc
Confidence            777899999999999999999999    89999999999999999997543 332222    346789999999999999


Q ss_pred             cchhhhhhhHHHHhhhc--CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          170 TSADLWSFACICFELAT--GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~--g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +++|+|+||+++||+++  ...||..-+      +.+.+.....++...+...                           
T Consensus       718 taSDvWafgvTlwE~~~~C~e~Py~~lt------~e~vven~~~~~~~~~~~~---------------------------  764 (807)
T KOG1094|consen  718 TASDVWAFGVTLWEVFMLCREQPYSQLT------DEQVVENAGEFFRDQGRQV---------------------------  764 (807)
T ss_pred             chhhhhhhHHHHHHHHHHHhhCchhhhh------HHHHHHhhhhhcCCCCcce---------------------------
Confidence            99999999999999864  678885433      2333333333322222111                           


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                             -...|..++..+.+||.+|+..|.++|||++++  |.+|+
T Consensus       765 -------~l~~P~~cp~~lyelml~Cw~~es~~RPsFe~l--h~~lq  802 (807)
T KOG1094|consen  765 -------VLSRPPACPQGLYELMLRCWRRESEQRPSFEQL--HLFLQ  802 (807)
T ss_pred             -------eccCCCcCcHHHHHHHHHHhchhhhcCCCHHHH--HHHHH
Confidence                   123456677888999999999999999999998  44443

>KOG0193 consensus Serine/threonine protein kinase RAF [Signal transduction mechanisms]

Probab=99.95  E-value=6.5e-28  Score=223.17  Aligned_cols=219  Identities=21%  Similarity=0.251  Sum_probs=163.0

Q ss_pred             ccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhh
Q 045353           24 SKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~  101 (358)
                      .||+|.|+- ..+..+-+.||.+-..-.+  .-|.+|+..-....  ...+-||+.+|+|.+|..++.- +..+...+..
T Consensus       416 dVAVK~Lnv~~pt~~qlqaFKnEVa~lkk--TRH~NIlLFMG~~~--~p~~AIiTqwCeGsSLY~hlHv~etkfdm~~~i  491 (678)
T KOG0193|consen  416 DVAVKLLNVDDPTPEQLQAFKNEVAVLKK--TRHENILLFMGACM--NPPLAIITQWCEGSSLYTHLHVQETKFDMNTTI  491 (678)
T ss_pred             ceEEEEEecCCCCHHHHHHHHHHHHHHhh--cchhhheeeehhhc--CCceeeeehhccCchhhhhccchhhhhhHHHHH
Confidence            589999987 4555566777766544444  34455555443333  3444899999999999998873 4567778999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec-----CCCCCCCccCCCcchhHHHhC---CCCC
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT-----HKQFTNDIQTRQYRCPEVLLG---SKYS  169 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~-----~~~~~~~~gt~~Y~aPE~l~~---~~~~  169 (358)
                      .|.+|+++|+.|||..+||||    .||++.+++.|||+|||++...     ...+....|...|||||++..   .+|+
T Consensus       492 dIAqQiaqGM~YLHAK~IIHrDLKSnNIFl~~~~kVkIgDFGLatvk~~w~g~~q~~qp~gsilwmAPEvIRmqd~nPfS  571 (678)
T KOG0193|consen  492 DIAQQIAQGMDYLHAKNIIHRDLKSNNIFLHEDLKVKIGDFGLATVKTRWSGEQQLEQPHGSLLWMAPEVIRMQDDNPFS  571 (678)
T ss_pred             HHHHHHHHhhhhhhhhhhhhhhccccceEEccCCcEEEecccceeeeeeeccccccCCCccchhhhcHHHHhhcccCCCC
Confidence            999999999999999999999    8999999999999999999542     233455678889999999985   3599


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ..+||||||||+|||++|..||.....       +++--   ..|                   .+.+.           
T Consensus       572 ~qSDVYaFGiV~YELltg~lPysi~~~-------dqIif---mVG-------------------rG~l~-----------  611 (678)
T KOG0193|consen  572 FQSDVYAFGIVWYELLTGELPYSIQNR-------DQIIF---MVG-------------------RGYLM-----------  611 (678)
T ss_pred             cccchhhhhHHHHHHHhCcCCcCCCCh-------hheEE---Eec-------------------ccccC-----------
Confidence            999999999999999999999973321       11100   000                   00000           


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                         .+.......+++++++|+..||.+++++||++.+||.
T Consensus       612 ---pd~s~~~s~~pk~mk~Ll~~C~~~~~~eRP~F~~il~  648 (678)
T KOG0193|consen  612 ---PDLSKIRSNCPKAMKRLLSDCWKFDREERPLFPQLLS  648 (678)
T ss_pred             ---ccchhhhccCHHHHHHHHHHHHhcCcccCccHHHHHH
Confidence               0011123345779999999999999999999999886

>cd05065 PTKc_EphR_B Catalytic domain of the Protein Tyrosine Kinases, Class EphB Ephrin Receptors

Probab=99.95  E-value=1.8e-27  Score=212.70  Aligned_cols=217  Identities=15%  Similarity=0.215  Sum_probs=165.3

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~  101 (358)
                      ..+++|.+....+......+.++.....+  ..+++++...... ..+...|+||||+.||+|.+++.. ...++..++.
T Consensus        33 ~~vaiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~ni~~~~~~~-~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~  109 (269)
T cd05065          33 IFVAIKTLKSGYTEKQRRDFLSEASIMGQ--FDHPNIIHLEGVV-TKSRPVMIITEFMENGALDSFLRQNDGQFTVIQLV  109 (269)
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCcCcceEEEEE-CCCCceEEEEecCCCCcHHHHHhhCCCCCCHHHHH
Confidence            46899999888777777888888776665  3566666665543 344568999999999999998875 3457888899


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCc---cCCCcchhHHHhCCCCC
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDI---QTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~---gt~~Y~aPE~l~~~~~~  169 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.......     ....   .+..|+|||.+.+..++
T Consensus       110 ~i~~~l~~al~~lH~~g~~H~dl~p~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  189 (269)
T cd05065         110 GMLRGIAAGMKYLSEMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSSLGGKIPIRWTAPEAIAYRKFT  189 (269)
T ss_pred             HHHHHHHHHHHHHHHCCEeecccChheEEEcCCCcEEECCCccccccccCccccccccccCCCcceeecCHhHhccCccc
Confidence            999999999999999999998    99999999999999999986543211     1111   24579999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++||||+||++|++++ |..||...+      .......+....                                   
T Consensus       190 ~~~DvwslG~~l~e~l~~g~~p~~~~~------~~~~~~~i~~~~-----------------------------------  228 (269)
T cd05065         190 SASDVWSYGIVMWEVMSYGERPYWDMS------NQDVINAIEQDY-----------------------------------  228 (269)
T ss_pred             chhhhhhhHHHHHHHhcCCCCCCCCCC------HHHHHHHHHcCC-----------------------------------
Confidence            99999999999999886 999996433      122222221100                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+++.+||..+|.+|||+.++++
T Consensus       229 ------~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~i~~  263 (269)
T cd05065         229 ------RLPPPMDCPTALHQLMLDCWQKDRNARPKFGQIVS  263 (269)
T ss_pred             ------cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                  01112334567889999999999999999999975

Protein Tyrosine Kinase (PTK) family; Ephrin Receptor (EphR) subfamily; class EphB receptors; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. EphRs comprise the largest subfamily of receptor tyr kinases (RTKs). Class EphB receptors bind to transmembrane ephrin-B ligands. There are six vertebrate EhpB receptors (EphB1-6), which display promiscuous interactions with three ephrin-B ligands. One exception is EphB2, which also interacts with ephrin A5. EphRs contain an ephrin-binding domain and two fibronectin repeats extracellularly, a transmembrane segment, and a cytoplasmic tyr kinase domain. Binding of the ephr

>cd05067 PTKc_Lck_Blk Catalytic domain of the Protein Tyrosine Kinases, Lymphocyte-specific kinase and Blk

Probab=99.95  E-value=3.1e-27  Score=210.17  Aligned_cols=219  Identities=15%  Similarity=0.174  Sum_probs=162.1

Q ss_pred             ccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--ccc
Q 045353           18 VTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVN   95 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~   95 (358)
                      ....+..+++|.+......  ..++.++.......  .+.+++......  .....|+||||+.+|+|.+++...  ..+
T Consensus        26 ~~~~~~~~a~K~~~~~~~~--~~~~~~E~~~l~~l--~h~~i~~~~~~~--~~~~~~~v~e~~~~~~L~~~~~~~~~~~~   99 (260)
T cd05067          26 YYNGHTKVAIKSLKQGSMS--PEAFLAEANLMKQL--QHPRLVRLYAVV--TQEPIYIITEYMENGSLVDFLKTPEGIKL   99 (260)
T ss_pred             ecCCCceEEEEEecCCCCc--HHHHHHHHHHHHhc--CCcCeeeEEEEE--ccCCcEEEEEcCCCCCHHHHHHhcCCCCC
Confidence            3456678899988754432  34566665555443  456665555443  345689999999999999987642  346


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CC---CCCccCCCcchhHHHhCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QF---TNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~---~~~~gt~~Y~aPE~l~~~~  167 (358)
                      ...+...++.+++.++.++|+.+++|+    +||++++++.++|+|||++..... ..   ....++..|+|||++.+..
T Consensus       100 ~~~~~~~i~~~i~~al~~LH~~~i~H~dl~p~ni~i~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~y~~pe~~~~~~  179 (260)
T cd05067         100 TINKLIDMAAQIAEGMAFIERKNYIHRDLRAANILVSETLCCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGT  179 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHHhcCCeecccccHHhEEEcCCCCEEEccCcceeecCCCCcccccCCcccccccCHHHhccCC
Confidence            778888999999999999999999998    999999999999999999976542 21   2234567899999999888


Q ss_pred             CCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|++++ |.+||.+.+      .......+.....                                
T Consensus       180 ~~~~~Di~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~~~~--------------------------------  221 (260)
T cd05067         180 FTIKSDVWSFGILLTEIVTYGRIPYPGMT------NPEVIQNLERGYR--------------------------------  221 (260)
T ss_pred             cCcccchHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHHHcCCC--------------------------------
Confidence            9999999999999999998 999996543      1222222111100                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                               ...+...+..+.+++.+||..+|++|||++++++
T Consensus       222 ---------~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05067         222 ---------MPRPDNCPEELYELMRLCWKEKPEERPTFEYLRS  255 (260)
T ss_pred             ---------CCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                     0112233567999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Lck and Blk kinases; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Lck (lymphocyte-specific kinase) and Blk are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Sr

>cd06634 STKc_TAO2 Catalytic domain of the Protein Serine/Threonine Kinase, Thousand-and-one amino acids 2

Probab=99.95  E-value=2.4e-27  Score=216.30  Aligned_cols=225  Identities=18%  Similarity=0.183  Sum_probs=160.9

Q ss_pred             cCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccCh
Q 045353           21 SSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~   97 (358)
                      +|..+++|.+...  .+.....++.++.+....  +.+++++....... .....|+||||+.| ++.+.+. ....+.+
T Consensus        39 ~~~~~~ik~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~l~~  114 (308)
T cd06634          39 NSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK--LRHPNTIQYRGCYL-REHTAWLVMEYCLG-SASDLLEVHKKPLQE  114 (308)
T ss_pred             CCcEEEEEEEecccccChHHHHHHHHHHHHHHh--CCCCCcccEEEEEE-cCCeeEEEEEccCC-CHHHHHHHcCCCCCH
Confidence            4566788876542  222233455555554444  34555555444322 24678999999975 6666553 3344678


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC---CCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG---SKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~---~~~~~  170 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++...... ....|++.|+|||++.+   ..++.
T Consensus       115 ~~~~~~~~~l~~~l~~LH~~~i~H~dl~p~nil~~~~~~~kl~dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~~~~~~  193 (308)
T cd06634         115 VEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-NXFVGTPYWMAPEVILAMDEGQYDG  193 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCCHHhEEECCCCcEEECCcccceeecCc-ccccCCccccCHHHHhhcccCCCCc
Confidence            8899999999999999999999999    9999999999999999998765432 34578899999999863   35788


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||....      ....+..+..  +..|                                 
T Consensus       194 ~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~--~~~~---------------------------------  232 (308)
T cd06634         194 KVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESP---------------------------------  232 (308)
T ss_pred             ccchHHHHHHHHHHHcCCCCCcccc------HHHHHHHHhh--cCCC---------------------------------
Confidence            9999999999999999999985432      1111111110  0000                                 


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                           .......+..+.+||.+||..+|.+|||+.++++|||+...
T Consensus       233 -----~~~~~~~~~~~~~li~~cl~~~P~~Rp~~~~ll~~~~~~~~  273 (308)
T cd06634         233 -----ALQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  273 (308)
T ss_pred             -----CcCcccccHHHHHHHHHHhhCCcccCCCHHHHhhCcccccc
Confidence                 00112346778899999999999999999999999999863

Serine/threonine kinases (STKs), thousand-and-one amino acids 2 (TAO2) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The TAO subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. TAO proteins possess mitogen-activated protein kinase (MAPK) kinase kinase (MAPKKK or MAP3K or MKKK) activity. MAPK signaling cascades are important in mediating cellular responses to extracellular signals. Human TAO2 is also known as prostate-derived Ste20-like kinase (PSK) and was identified in a screen for overexpressed RNAs in prostate cancer. TAO2 activates both p38 and c-Jun N-terminal kinase (JNK), by phosphorylating and activatin

>cd05045 PTKc_RET Catalytic domain of the Protein Tyrosine Kinase, REarranged during Transfection protein

Probab=99.94  E-value=2.6e-27  Score=214.17  Aligned_cols=216  Identities=17%  Similarity=0.173  Sum_probs=161.1

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----------   92 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----------   92 (358)
                      .+++|.+..........++.++......  +.|++++....... .....|+||||+.||+|.+++...           
T Consensus        32 ~~~~k~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  108 (290)
T cd05045          32 TVAVKMLKENASSSELRDLLSEFNLLKQ--VNHPHVIKLYGACS-QDGPLLLIVEYAKYGSLRSFLRESRKVGPSYLGSD  108 (290)
T ss_pred             eEEEEecCCCCCHHHHHHHHHHHHHHhh--CCCCCEeeEEEEEe-cCCCcEEEEEecCCCCHHHHHHhcCCccccccccc
Confidence            5788888776665555667777666655  35677776554433 345689999999999999876531           


Q ss_pred             -------------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCC
Q 045353           93 -------------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTN  150 (358)
Q Consensus        93 -------------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~  150 (358)
                                   ..+....+..++.+++.++.++|+.+++|+    +|||+++++.+||+|||++......     ...
T Consensus       109 ~~~~~~~~~~~~~~~l~~~~~~~i~~~i~~~l~~LH~~~ivH~dikp~nill~~~~~~kl~dfg~~~~~~~~~~~~~~~~  188 (290)
T cd05045         109 GNRNSSYLDNPDERALTMGDLISFAWQISRGMQYLAEMKLVHRDLAARNVLVAEGRKMKISDFGLSRDVYEEDSYVKRSK  188 (290)
T ss_pred             cccccccccCccccccCHHHHHHHHHHHHHHHHHHHHCCeehhhhhhheEEEcCCCcEEeccccccccccCccchhcccC
Confidence                         125567788999999999999999999999    9999999999999999999754321     122


Q ss_pred             CccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh
Q 045353          151 DIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD  229 (358)
Q Consensus       151 ~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~  229 (358)
                      ..++..|+|||.+.+..++.++|||||||++|+|++ |..||.+..      .......+...+                
T Consensus       189 ~~~~~~y~apE~~~~~~~~~~~Di~slG~~l~el~t~g~~p~~~~~------~~~~~~~~~~~~----------------  246 (290)
T cd05045         189 GRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIA------PERLFNLLKTGY----------------  246 (290)
T ss_pred             CCCCccccCHHHHccCCcchHhHHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHhCCC----------------
Confidence            345678999999988889999999999999999998 999996432      111111111000                


Q ss_pred             hhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          230 FFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                               ....+...+..+.+|+.+||+.||++|||+.++++
T Consensus       247 -------------------------~~~~~~~~~~~~~~~i~~cl~~~P~~Rp~~~~i~~  281 (290)
T cd05045         247 -------------------------RMERPENCSEEMYNLMLTCWKQEPDKRPTFADISK  281 (290)
T ss_pred             -------------------------CCCCCCCCCHHHHHHHHHHccCCcccCCCHHHHHH
Confidence                                     00112334678899999999999999999999874

Protein Tyrosine Kinase (PTK) family; RET (REarranged during Transfection) protein; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. RET is a receptor tyr kinase (RTK) containing an extracellular region with four cadherin-like repeats, a calcium-binding site, and a cysteine-rich domain, a transmembrane segment, and an intracellular catalytic domain. It is part of a multisubunit complex that binds glial-derived neurotropic factor (GDNF) family ligands (GFLs) including GDNF, neurturin, artemin, and persephin. GFLs bind RET along with four GPI-anchored coreceptors, bringing two RET molecules together, leadi

>cd05087 PTKc_Aatyk1_Aatyk3 Catalytic domain of the Protein Tyrosine Kinases, Apoptosis-associated tyrosine kinases 1 and 3

Probab=99.94  E-value=3.5e-27  Score=210.87  Aligned_cols=223  Identities=14%  Similarity=0.136  Sum_probs=156.6

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----ccc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----VVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----~~~   95 (358)
                      ++..+++|.+....+......+.++.....+  +.|++++....... .....|+||||++||+|.+++...     ...
T Consensus        21 ~~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~   97 (269)
T cd05087          21 TPAQVVVKELRVSASVQEQMKFLEEAQPYRS--LQHSNLLQCLGQCT-EVTPYLLVMEFCPLGDLKGYLRSCRKAELMTP   97 (269)
T ss_pred             CceEEEEEecCCCCChHHHHHHHHHHHHHHh--CCCCCEeeEEEEEc-CCCCcEEEEECCCCCcHHHHHHHhhhcccccc
Confidence            3456788888776655555566666665555  46677776655433 345689999999999999988632     233


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ....+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....|+..|+|||++.+.
T Consensus        98 ~~~~~~~~~~qi~~al~~lH~~~i~H~dlkp~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  177 (269)
T cd05087          98 DPTTLQRMACEIALGLLHLHKNNFIHSDLALRNCLLTADLTVKIGDYGLSHNKYKEDYYVTPDQLWVPLRWIAPELVDEV  177 (269)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCEeccccCcceEEEcCCCcEEECCccccccccCcceeecCCCcCCcccccCHhHhccc
Confidence            455677888999999999999999998    9999999999999999999653321     1234578889999998642


Q ss_pred             -------CCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          167 -------KYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       167 -------~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                             .++.++||||+||++|+|++ |..||....      ..+......  .+....                    
T Consensus       178 ~~~~~~~~~~~~~DiwslG~~l~el~~~g~~p~~~~~------~~~~~~~~~--~~~~~~--------------------  229 (269)
T cd05087         178 HGNLLVVDQTKESNVWSLGVTIWELFELGSQPYRHLS------DEQVLTYTV--REQQLK--------------------  229 (269)
T ss_pred             cccccccCCCccchhHHHHHHHHHHHhCCCCCCCCCC------hHHHHHHHh--hcccCC--------------------
Confidence                   35789999999999999996 999996432      111111111  000000                    


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       .             .........+..+.+++..|+ .+|++|||+++|+.
T Consensus       230 -~-------------~~~~~~~~~~~~~~~l~~~c~-~~P~~Rpt~~~l~~  265 (269)
T cd05087         230 -L-------------PKPRLKLPLSDRWYEVMQFCW-LQPEQRPSAEEVHL  265 (269)
T ss_pred             -C-------------CCCccCCCCChHHHHHHHHHh-cCcccCCCHHHHHH
Confidence             0             000111223567889999998 68999999999974

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 1 (Aatyk1) and Aatyk3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk1 and Aatyk3 are members of the Aatyk subfamily of proteins. Aatyk3 is a receptor kinase containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk1 has a similar domain arrangement but without the transmembrane segment and is thus, a cytoplasmic (or nonreceptor) kinase. The expression of Aatyk1 (also referred simply as Aatyk) is upregulated during growth arrest and apoptosis in myeloid cells

>cd05083 PTKc_Chk Catalytic domain of the Protein Tyrosine Kinase, Csk homologous kinase

Probab=99.94  E-value=2.9e-27  Score=209.63  Aligned_cols=216  Identities=15%  Similarity=0.168  Sum_probs=160.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~   97 (358)
                      .++..+++|.......   ...+.++......  ..+++++.......  ....|+||||+.||+|.+++....  ....
T Consensus        27 ~~~~~~~iK~~~~~~~---~~~~~~e~~~l~~--~~~~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~   99 (254)
T cd05083          27 YTGQKVAVKNIKCDVT---AQAFLEETAVMTK--LHHKNLVRLLGVIL--HNGLYIVMELMSKGNLVNFLRTRGRALVSV   99 (254)
T ss_pred             cCCCceEEEeecCcch---HHHHHHHHHHHHh--CCCCCcCeEEEEEc--CCCcEEEEECCCCCCHHHHHHhcCcCCCCH
Confidence            4566788888765443   2345555544433  35666666554433  234799999999999999886533  4677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++............+..|+|||.+.+..++.++|
T Consensus       100 ~~~~~~~~qi~~al~~lH~~~~~H~dl~p~nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~y~~pe~~~~~~~~~~~D  179 (254)
T cd05083         100 IQLLQFSLDVAEGMEYLESKKLVHRDLAARNILVSEDGVAKVSDFGLARVGSMGVDNSKLPVKWTAPEALKHKKFSSKSD  179 (254)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccccCcceEEEcCCCcEEECCCccceeccccCCCCCCCceecCHHHhccCCcCchhh
Confidence            7888899999999999999999988    999999999999999999976554444445567899999998888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      +|||||++|+|++ |.+||....      .......+..  +.                                     
T Consensus       180 v~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~--~~-------------------------------------  214 (254)
T cd05083         180 VWSYGVLLWEVFSYGRAPYPKMS------LKEVKECVEK--GY-------------------------------------  214 (254)
T ss_pred             HHHHHHHHHHHHhCCCCCCccCC------HHHHHHHHhC--CC-------------------------------------
Confidence            9999999999997 999996433      1111111110  00                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        ....+...+..+.+|+.+||..+|++|||+++++.
T Consensus       215 --~~~~~~~~~~~~~~li~~~l~~~p~~Rp~~~~l~~  249 (254)
T cd05083         215 --RMEPPEGCPADVYVLMTSCWETEPKKRPSFHKLRE  249 (254)
T ss_pred             --CCCCCCcCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence              00112234678889999999999999999999875

Protein Tyrosine Kinase (PTK) family; Csk homologous kinase (Chk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Csk subfamily kinases are cytoplasmic (or nonreceptor) tyr kinases containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. Chk is also referred to as megakaryocyte-associated tyrosine kinase (Matk). To inhibit Src kinases, Chk is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. Chk inhibit Src ki

>KOG0695 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.94  E-value=8.4e-28  Score=208.23  Aligned_cols=199  Identities=20%  Similarity=0.193  Sum_probs=160.1

Q ss_pred             CCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC
Q 045353           55 GTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD  130 (358)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~  130 (358)
                      .++.+|.+..-..+ ...++.|.||++||+|--.......+.+..++.+-..+.-++.|+|..|||-|    +|+|++..
T Consensus       309 n~pflvglhscfqt-esrlffvieyv~ggdlmfhmqrqrklpeeharfys~ei~lal~flh~rgiiyrdlkldnvlldae  387 (593)
T KOG0695|consen  309 NNPFLVGLHSCFQT-ESRLFFVIEYVNGGDLMFHMQRQRKLPEEHARFYSAEICLALNFLHERGIIYRDLKLDNVLLDAE  387 (593)
T ss_pred             CCCeEEehhhhhcc-cceEEEEEEEecCcceeeehhhhhcCcHHHhhhhhHHHHHHHHHHhhcCeeeeeccccceEEccC
Confidence            45566666555444 45678899999999999888888899999999999999999999999999988    99999999


Q ss_pred             CcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC-CCcHHHH
Q 045353          131 VQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNY-DKDEDHL  206 (358)
Q Consensus       131 ~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~-~~~~~~l  206 (358)
                      |++||+|+|+++..   +....+.||||.|.|||++.|..|+..+|+|+|||+|+||+.|+.||+--..++. .+.++.+
T Consensus       388 ghikltdygmcke~l~~gd~tstfcgtpnyiapeilrgeeygfsvdwwalgvlmfemmagrspfdivgm~n~d~ntedyl  467 (593)
T KOG0695|consen  388 GHIKLTDYGMCKEGLGPGDTTSTFCGTPNYIAPEILRGEEYGFSVDWWALGVLMFEMMAGRSPFDIVGMDNPDMNTEDYL  467 (593)
T ss_pred             CceeecccchhhcCCCCCcccccccCCCcccchhhhcccccCceehHHHHHHHHHHHHcCCCCcceecCCCcccchhHHH
Confidence            99999999999653   3345677999999999999999999999999999999999999999974433221 1223333


Q ss_pred             HHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC---
Q 045353          207 ALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT---  283 (358)
Q Consensus       207 ~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t---  283 (358)
                      -.+                                         ++......|...+-.+..+++..|..||.+|..   
T Consensus       468 fqv-----------------------------------------ilekqiriprslsvkas~vlkgflnkdp~erlgc~~  506 (593)
T KOG0695|consen  468 FQV-----------------------------------------ILEKQIRIPRSLSVKASHVLKGFLNKDPKERLGCRP  506 (593)
T ss_pred             HHH-----------------------------------------HhhhcccccceeehhhHHHHHHhhcCCcHHhcCCCc
Confidence            222                                         122233445555677788999999999999974   


Q ss_pred             ---HHHHhcCcCcCC
Q 045353          284 ---AAQCLSHPWMSA  295 (358)
Q Consensus       284 ---a~elL~hpwf~~  295 (358)
                         ..++..|+||+.
T Consensus       507 ~~g~~dik~h~ffr~  521 (593)
T KOG0695|consen  507 QTGFSDIKSHAFFRS  521 (593)
T ss_pred             ccchhhhhcchhhhh
Confidence               678999999985

>cd05046 PTK_CCK4 Pseudokinase domain of the Protein Tyrosine Kinase, Colon Carcinoma Kinase 4

Probab=99.94  E-value=3.3e-27  Score=211.64  Aligned_cols=220  Identities=14%  Similarity=0.183  Sum_probs=165.8

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--------   93 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--------   93 (358)
                      ...+++|.+.....+.....++++++...+.  .+++++...... ......|+||||+++|+|.+++....        
T Consensus        35 ~~~~~~k~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~-~~~~~~~lv~e~~~~~~L~~~i~~~~~~~~~~~~  111 (275)
T cd05046          35 ETLVLVKALQKTKDENLQSEFRRELDMFRKL--SHKNVVRLLGLC-REAEPHYMILEYTDLGDLKQFLRATKSKDEKLKP  111 (275)
T ss_pred             cceEEEEccCCccchHHHHHHHHHHHHHHhc--CCcceeeeEEEE-CCCCcceEEEEecCCCcHHHHHHhcccccccccc
Confidence            3467888887655555667788887776664  566666555433 33457899999999999999887544        


Q ss_pred             -ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHh
Q 045353           94 -VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 -~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~  164 (358)
                       .+.+.++..++.+++.++.|+|+.+++|+    +|||++.++.++|+|||++.....    ......++..|+|||.+.
T Consensus       112 ~~l~~~~~~~~~~~l~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~  191 (275)
T cd05046         112 PPLSTKQKVALCTQIALGMDHLSNARFVHRDLAARNCLVSSQREVKVSLLSLSKDVYNSEYYKLRNALIPLRWLAPEAVQ  191 (275)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhcCcccCcCccceEEEeCCCcEEEcccccccccCcccccccCCceeEEeecChhhhc
Confidence             57889999999999999999999999999    999999999999999999864322    123345677899999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          165 GSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +..++.++|||||||++|+|++ |..||....      +...+..+..  +..                           
T Consensus       192 ~~~~~~~~Di~slG~~l~~l~~~~~~p~~~~~------~~~~~~~~~~--~~~---------------------------  236 (275)
T cd05046         192 EDDFSTKSDVWSFGVLMWEVFTQGELPFYGLS------DEEVLNRLQA--GKL---------------------------  236 (275)
T ss_pred             cCCCCchhhHHHHHHHHHHHHhCCCCCccccc------hHHHHHHHHc--CCc---------------------------
Confidence            8888999999999999999998 788885332      1121111110  000                           


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                 .+..+..++..+.+++.+||+.||++|||+.+++++
T Consensus       237 -----------~~~~~~~~~~~l~~~i~~~l~~~p~~Rp~~~~~l~~  272 (275)
T cd05046         237 -----------ELPVPEGCPSRLYKLMTRCWAVNPKDRPSFSELVSA  272 (275)
T ss_pred             -----------CCCCCCCCCHHHHHHHHHHcCCCcccCCCHHHHHHH
Confidence                       011123346788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Colon Carcinoma Kinase 4 (CCK4); pseudokinase domain. The PTKc (catalytic domain) family, to which this subfamily belongs, includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. CCK4, also called protein tyrosine kinase 7 (PTK7), is an orphan receptor tyr kinase (RTK) containing an extracellular region with seven immunoglobulin domains, a transmembrane segment, and an intracellular inactive pseudokinase domain. Studies in mice reveal that CCK4 is essential for neural development. Mouse embryos containing a truncated CCK4 die perinatally and display craniorachischisis, a severe form of neural tube defect. The mechanism of action of the CCK4 pseudokinase is s

>cd05034 PTKc_Src_like Catalytic domain of Src kinase-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.9e-27  Score=208.85  Aligned_cols=219  Identities=16%  Similarity=0.185  Sum_probs=162.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      .+.+..+++|.+...-.  ..+.+.++.+....  ..+.+++....... .....|+||||++|++|.+++....  .+.
T Consensus        27 ~~~~~~~~vK~~~~~~~--~~~~~~~e~~~l~~--l~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~i~~~~~~~~~  101 (261)
T cd05034          27 WNGTTKVAVKTLKPGTM--SPEAFLQEAQIMKK--LRHDKLVQLYAVCS-EEEPIYIVTEYMSKGSLLDFLKSGEGKKLR  101 (261)
T ss_pred             EcCCceEEEEEecCCcc--CHHHHHHHHHHHhh--CCCCCEeeeeeeee-cCCceEEEEeccCCCCHHHHHhccccCCCC
Confidence            44456788888875432  23456666665555  34666666654433 3457899999999999999887543  567


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ..++..++.+++.++.++|+.+++|+    +||++++++.+||+|||++......    .....++..|+|||.+.+..+
T Consensus       102 ~~~~~~~~~~i~~al~~lh~~~i~h~di~p~nili~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~  181 (261)
T cd05034         102 LPQLVDMAAQIAEGMAYLESRNYIHRDLAARNILVGENLVCKIADFGLARLIEDDEYTAREGAKFPIKWTAPEAANYGRF  181 (261)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCcccCCcchheEEEcCCCCEEECccccceeccchhhhhhhccCCCccccCHHHhccCCc
Confidence            88889999999999999999999988    9999999999999999999765422    112234568999999998889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++||||+||++|++++ |+.||.+..      ....+..+...+.                                 
T Consensus       182 ~~~~Di~slG~il~~l~t~g~~p~~~~~------~~~~~~~~~~~~~---------------------------------  222 (261)
T cd05034         182 TIKSDVWSFGILLTEIVTYGRVPYPGMT------NREVLEQVERGYR---------------------------------  222 (261)
T ss_pred             CchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCCC---------------------------------
Confidence            999999999999999998 999996433      2233333221110                                 


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                              ...+...+..+.+++.+||..||++|||++++++
T Consensus       223 --------~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  256 (261)
T cd05034         223 --------MPRPPNCPEELYDLMLQCWDKDPEERPTFEYLQS  256 (261)
T ss_pred             --------CCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHH
Confidence                    0112223567899999999999999999999864

Protein Tyrosine Kinase (PTK) family; Src kinase subfamily; catalytic (c) domain. Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, and Yes. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Src (or c-Src) proteins are cytoplasmic (or non-receptor) tyr kinases which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-t

>KOG4250 consensus TANK binding protein kinase TBK1 [Signal transduction mechanisms]

Probab=99.94  E-value=1.5e-27  Score=224.66  Aligned_cols=176  Identities=22%  Similarity=0.239  Sum_probs=153.5

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCccccccc--
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQND--   91 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~--   91 (358)
                      .++|..||+|+-+..++...+.+.-++.....++.  |++||...+..++..     ....+|||||.||||+..+++  
T Consensus        35 ketG~~vAvK~~~~~~~~r~~e~~~~EieilkKLn--h~NIVk~f~iee~~~~~~~~~~~vlvmEyC~gGsL~~~L~~PE  112 (732)
T KOG4250|consen   35 KETGRLVAVKTFNKESSLRPRERWCREIEILKKLN--HPNIVKLFDIEETKFLGLVTRLPVLVMEYCSGGSLRKVLNSPE  112 (732)
T ss_pred             cccccchhHHhhhhhcccchHHHHHHHHHHHHHcC--chhhhhhcccCCccccCcccccceEEEeecCCCcHHHHhcCcc
Confidence            78999999999999998888899999999988864  888888887776543     566799999999999998874  


Q ss_pred             -ccccChhhhhHHHHhhhhccccccCCCCCCc----cccccc--CCCc--EEEEecCCceecCC--CCCCCccCCCcchh
Q 045353           92 -SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA--VDVQ--CKLVDFGNACWTHK--QFTNDIQTRQYRCP  160 (358)
Q Consensus        92 -~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~--~~~~--vkL~DFG~a~~~~~--~~~~~~gt~~Y~aP  160 (358)
                       ...+.+.++..++..+..|+.++|++||+||    .||++-  .+|+  -||+|||.|+..++  .+++.+||+.|.+|
T Consensus       113 N~~GLpE~e~l~lL~d~~~al~~LrEn~IvHRDlKP~NIvl~~Gedgq~IyKLtDfG~Arel~d~s~~~S~vGT~~YLhP  192 (732)
T KOG4250|consen  113 NAYGLPESEFLDLLSDLVSALRHLRENGIVHRDLKPGNIVLQIGEDGQSIYKLTDFGAARELDDNSLFTSLVGTEEYLHP  192 (732)
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHHcCceeccCCCCcEEEeecCCCceEEeeecccccccCCCCCeeeeecCchhhcCh
Confidence             4468999999999999999999999999999    899974  3343  49999999987654  47788999999999


Q ss_pred             HHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCC
Q 045353          161 EVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSG  196 (358)
Q Consensus       161 E~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~  196 (358)
                      |++.. ..|+..+|.|||||++|+.+||..||.++.+
T Consensus       193 el~E~q~~y~~tVDLWS~GvtlY~caTG~lPF~p~~~  229 (732)
T KOG4250|consen  193 ELYERQKKYTATVDLWSFGVTLYECATGELPFIPFGG  229 (732)
T ss_pred             HHHhhccCcCceeehhhhhhHHHHHhccCCCCCcCCC
Confidence            99995 7799999999999999999999999976654

>cd05073 PTKc_Hck Catalytic domain of the Protein Tyrosine Kinase, Hematopoietic cell kinase

Probab=99.94  E-value=6.2e-27  Score=208.23  Aligned_cols=217  Identities=14%  Similarity=0.177  Sum_probs=159.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      ..+..+++|.+..+.  ....++.++.+....  ..+.+++........  ...|++|||+++|+|.+++...  ...+.
T Consensus        28 ~~~~~~~iK~~~~~~--~~~~~~~~e~~~l~~--l~~~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~~~~~~~~~~~~  101 (260)
T cd05073          28 NKHTKVAVKTMKPGS--MSVEAFLAEANVMKT--LQHDKLVKLHAVVTK--EPIYIITEFMAKGSLLDFLKSDEGSKQPL  101 (260)
T ss_pred             cCCccEEEEecCCCh--hHHHHHHHHHHHHHh--cCCCCcceEEEEEcC--CCeEEEEEeCCCCcHHHHHHhCCccccCH
Confidence            344567888776532  234556666665555  356666666544433  5689999999999999988653  34567


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +||+++.++.+||+|||.+......    .....++..|+|||++.+..++
T Consensus       102 ~~~~~~~~~l~~aL~~lH~~~i~H~dl~p~ni~i~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~  181 (260)
T cd05073         102 PKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSFT  181 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccccccCcceEEEcCCCcEEECCCcceeeccCCCcccccCCcccccccCHhHhccCCcC
Confidence            7888899999999999999999999    9999999999999999998754322    1122456679999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|+|||||++|++++ |..||.+.+      .......+..   ..                                
T Consensus       182 ~~~Di~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~~~---~~--------------------------------  220 (260)
T cd05073         182 IKSDVWSFGILLMEIVTYGRIPYPGMS------NPEVIRALER---GY--------------------------------  220 (260)
T ss_pred             ccccchHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHhC---CC--------------------------------
Confidence            99999999999999998 999996433      1111111110   00                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...+..+.+++.+||+.||++|||+.++++
T Consensus       221 ------~~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~l~~  255 (260)
T cd05073         221 ------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQS  255 (260)
T ss_pred             ------CCCCcccCCHHHHHHHHHHcccCcccCcCHHHHHH
Confidence                  00112234568899999999999999999998864

Protein Tyrosine Kinase (PTK) family; Hematopoietic cell kinase (Hck); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Hck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) tyr kinases. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). Src proteins are involved in signaling pa

>cd05057 PTKc_EGFR_like Catalytic domain of Epidermal Growth Factor Receptor-like Protein Tyrosine Kinases

Probab=99.94  E-value=4.1e-27  Score=211.58  Aligned_cols=215  Identities=15%  Similarity=0.109  Sum_probs=164.0

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~  102 (358)
                      .+++|.+...........+.++....+..  .+++++........  ...++||||+.+|+|.+++.. ...+++..+..
T Consensus        38 ~~aik~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~--~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~  113 (279)
T cd05057          38 PVAIKVLREETSPKANKEILDEAYVMASV--DHPHVVRLLGICLS--SQVQLITQLMPLGCLLDYVRNHKDNIGSQYLLN  113 (279)
T ss_pred             EEEEEeccCCCCHHHHHHHHHHHHHHHhC--CCCCcceEEEEEec--CceEEEEecCCCCcHHHHHHhccCCCCHHHHHH
Confidence            57888887776666667777777766663  56666666554443  678999999999999998875 34578889999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC-----CCccCCCcchhHHHhCCCCCcchh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT-----NDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~-----~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ++.+++.++.++|+.+++|+    +|||++.++.+||+|||+++.......     ...++..|+|||.+.+..++.++|
T Consensus       114 ~~~qi~~~l~~LH~~~i~H~di~p~nil~~~~~~~kL~dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (279)
T cd05057         114 WCVQIAKGMSYLEEKRLVHRDLAARNVLVKTPQHVKITDFGLAKLLDVDEKEYHAEGGKVPIKWMALESILHRIYTHKSD  193 (279)
T ss_pred             HHHHHHHHHHHHHhCCEEecccCcceEEEcCCCeEEECCCcccccccCcccceecCCCcccccccCHHHhhcCCcCchhh
Confidence            99999999999999999998    999999999999999999976542211     122356799999998888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|++++ |..||.+..      ..+....+.. ..                                      
T Consensus       194 i~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~-~~--------------------------------------  228 (279)
T cd05057         194 VWSYGVTVWELMTFGAKPYEGIP------AVEIPDLLEK-GE--------------------------------------  228 (279)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCC------HHHHHHHHhC-CC--------------------------------------
Confidence            9999999999998 999996543      1121111110 00                                      


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        ....+...+..+.+++.+||..||.+|||+.++++
T Consensus       229 --~~~~~~~~~~~~~~~~~~~l~~~p~~Rp~~~~l~~  263 (279)
T cd05057         229 --RLPQPPICTIDVYMVLVKCWMIDAESRPTFKELIN  263 (279)
T ss_pred             --CCCCCCCCCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence              01122234567889999999999999999998864

Protein Tyrosine Kinase (PTK) family; Epidermal Growth Factor Receptor (EGFR) subfamily; catalytic (c) domain. EGFR (HER, ErbB) subfamily members include EGFR (HER1, ErbB1), HER2 (ErbB2), HER3 (ErbB3), HER4 (ErbB4), and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. The EGFR proteins are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instea

>cd05078 PTK_Jak2_Jak3_rpt1 Pseudokinase (repeat 1) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=1.8e-27  Score=211.48  Aligned_cols=215  Identities=15%  Similarity=0.142  Sum_probs=154.3

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      ...+++|.+.... ......+..+.+...+  ..|++++........ ....++||||+++|+|..++... ..+.+..+
T Consensus        27 ~~~~~~k~~~~~~-~~~~~~~~~e~~~l~~--~~h~~iv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~  102 (258)
T cd05078          27 KTEVLLKVLDKSH-RNYSESFFEAASMMSQ--LSHKHLVLNYGVCVC-GDESIMVQEYVKFGSLDTYLKKNKNLINISWK  102 (258)
T ss_pred             cchhhHHhhcchh-HHHHHHHHHHHHHHHh--CCCCChhheeeEEEe-CCCcEEEEecCCCCcHHHHHhcCCCCCCHHHH
Confidence            3357777775432 1222344444444444  456777766655443 45689999999999999998754 35678888


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCc--------EEEEecCCceecCCCCCCCccCCCcchhHHHhCC-C
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ--------CKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~--------vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      ..++.|++.++.++|+.+++|+    +|||++.++.        ++++|||++..... .....++..|+|||++.+. .
T Consensus       103 ~~~~~qi~~~l~~lH~~~iiH~dlkp~nili~~~~~~~~~~~~~~~l~d~g~~~~~~~-~~~~~~~~~y~aPE~~~~~~~  181 (258)
T cd05078         103 LEVAKQLAWALHFLEDKGLTHGNVCAKNVLLIREEDRKTGNPPFIKLSDPGISITVLP-KEILLERIPWVPPECIENPQN  181 (258)
T ss_pred             HHHHHHHHHHHHHHHHCCeecCCCccceEEEecccccccCCCceEEecccccccccCC-chhccccCCccCchhccCCCC
Confidence            8999999999999999999999    9999987764        69999999865433 2334688899999999874 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCC-cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|. .||....      ....... .   .                                
T Consensus       182 ~~~~~DiwslG~~l~~l~~g~~~~~~~~~------~~~~~~~-~---~--------------------------------  219 (258)
T cd05078         182 LSLAADKWSFGTTLWEIFSGGDKPLSALD------SQKKLQF-Y---E--------------------------------  219 (258)
T ss_pred             CCchhhHHHHHHHHHHHHcCCCCChhhcc------HHHHHHH-H---H--------------------------------
Confidence            799999999999999999985 5654222      1111100 0   0                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                             .....+...+.++.+||.+||+.||++|||++++++.
T Consensus       220 -------~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~  256 (258)
T cd05078         220 -------DRHQLPAPKWTELANLINQCMDYEPDFRPSFRAIIRD  256 (258)
T ss_pred             -------ccccCCCCCcHHHHHHHHHHhccChhhCCCHHHHHHh
Confidence                   0112233345678999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; pseudokinase domain (repeat 1). The PTKc (catalytic domain) family to which this subfamily belongs, is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase domain. The pseudokinase domain shows similarity to tyr kinases but lacks crucial residues for catalytic activity and ATP binding. It modulates the kinase activity

>cd05081 PTKc_Jak2_Jak3_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases 2 and 3

Probab=99.94  E-value=6e-27  Score=211.02  Aligned_cols=234  Identities=14%  Similarity=0.130  Sum_probs=162.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCcccccccc-cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      .+|..+++|.+... .....+.+.++.+...+  +.+++++....... .....+|+||||++||+|.+++... ..+.+
T Consensus        31 ~~~~~v~iK~~~~~-~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~l~~  107 (284)
T cd05081          31 NTGEVVAVKKLQHS-TAEHLRDFEREIEILKS--LQHDNIVKYKGVCYSAGRRNLRLVMEYLPYGSLRDYLQKHRERLDH  107 (284)
T ss_pred             CCCcEEEEEEeccC-CHHHHHHHHHHHHHHHh--CCCCCeeEEEEEEccCCCCceEEEEEecCCCCHHHHHHhcCcCCCH
Confidence            45667888887654 34445667777776665  35666666554332 2345688999999999999988653 45788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCC------CCccCCCcchhHHHhCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~------~~~gt~~Y~aPE~l~~~~  167 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++........      ...++..|+|||++.+..
T Consensus       108 ~~~~~~~~~l~~aL~~LH~~~i~H~dlkp~nili~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  187 (284)
T cd05081         108 RKLLLYASQICKGMEYLGSKRYVHRDLATRNILVESENRVKIGDFGLTKVLPQDKEYYKVREPGESPIFWYAPESLTESK  187 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCCHhhEEECCCCeEEECCCcccccccCCCcceeecCCCCCceEeeCHHHhccCC
Confidence            8899999999999999999999998    999999999999999999976533211      122345699999999888


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..++.....       ..    .+..+......        ..      ....       
T Consensus       188 ~~~~~Di~slG~~l~el~~~~~~~~~~~~-------~~----~~~~~~~~~~~--------~~------~~~~-------  235 (284)
T cd05081         188 FSVASDVWSFGVVLYELFTYSDKSCSPPA-------EF----MRMMGNDKQGQ--------MI------VYHL-------  235 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhcCCcCCCcch-------hh----hhhcccccccc--------cc------hHHH-------
Confidence            99999999999999999998776532210       00    00000000000        00      0000       


Q ss_pred             chhhHH--hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLV--EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       .....  .....+...+..+.+|+.+||..+|++|||+.++++
T Consensus       236 -~~~~~~~~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05081         236 -IELLKNNGRLPAPPGCPAEIYAIMKECWNNDPSQRPSFSELAL  278 (284)
T ss_pred             -HHHHhcCCcCCCCCCCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence             00000  011223345678999999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase 2 (Jak2) and Jak3; catalytic (c) domain (repeat 2). The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak2 and Jak3 are members of the Janus kinase (Jak) subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal catalytic tyr kinase domain. Jaks are crucial for cytokine receptor signaling. They are activated by autophosphorylation upon cytokine-induced receptor aggregation, and subsequently trigger downstream signaling events such as th

>smart00220 S_TKc Serine/Threonine protein kinases, catalytic domain

Probab=99.94  E-value=5.5e-27  Score=205.23  Aligned_cols=226  Identities=20%  Similarity=0.231  Sum_probs=172.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..+++|.+.........+.++++.+.....  .+.+++........ ....+++|||+.+++|.+++......+...+
T Consensus        13 ~~~~~~~k~~~~~~~~~~~~~~~~e~~~~~~l--~~~~i~~~~~~~~~-~~~~~l~~e~~~~~~L~~~~~~~~~~~~~~~   89 (244)
T smart00220       13 TGKLVAIKVIKKEKIKKKRERILREISILKKL--KHPNIVRLYDVFED-EDKLYLVMEYCDGGDLFDLLKKRGRLSEDEA   89 (244)
T ss_pred             CCcEEEEEEecccccccHHHHHHHHHHHHHhC--CCCcHHHHHhheee-CCEEEEEEeCCCCCCHHHHHHhccCCCHHHH
Confidence            57788999988776655467777777766554  55555544443332 3678999999999999998876555788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      ..++.+++.++.++|+.+++|+    .||++++++.++|+|||.+.....  ......++..|++||.+.+..++.++||
T Consensus        90 ~~~~~~l~~~l~~lh~~~i~h~~i~~~ni~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~pE~~~~~~~~~~~Di  169 (244)
T smart00220       90 RFYARQILSALEYLHSNGIIHRDLKPENILLDEDGHVKLADFGLARQLDPGGLLTTFVGTPEYMAPEVLLGKGYGKAVDV  169 (244)
T ss_pred             HHHHHHHHHHHHHHHHcCeecCCcCHHHeEECCCCcEEEccccceeeeccccccccccCCcCCCCHHHHccCCCCchhhH
Confidence            9999999999999999999988    899999999999999999977654  3455678999999999998888999999


Q ss_pred             hhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHh
Q 045353          175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE  254 (358)
Q Consensus       175 wSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (358)
                      ||+|++++++++|..||....      +...   +.+.+.......                                  
T Consensus       170 ~slG~~l~~l~~~~~p~~~~~------~~~~---~~~~~~~~~~~~----------------------------------  206 (244)
T smart00220      170 WSLGVILYELLTGKPPFPGDD------QLLE---LFKKIGKPKPPF----------------------------------  206 (244)
T ss_pred             HHHHHHHHHHHhCCCCCCCCC------cHHH---HHHHHhccCCCC----------------------------------
Confidence            999999999999999996421      1111   111111100000                                  


Q ss_pred             hhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          255 KYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       255 ~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                       .......+..+.+++.+||..||++||++.++++||||
T Consensus       207 -~~~~~~~~~~~~~~i~~~l~~~p~~Rp~~~~~~~~~~~  244 (244)
T smart00220      207 -PPPEWKISPEAKDLIRKLLVKDPEKRLTAEEALQHPFF  244 (244)
T ss_pred             -ccccccCCHHHHHHHHHHccCCchhccCHHHHhhCCCC
Confidence             00000045688899999999999999999999999997

Phosphotransferases. Serine or threonine-specific kinase subfamily.

>cd05112 PTKc_Itk Catalytic domain of the Protein Tyrosine Kinase, Interleukin-2-inducible T-cell Kinase

Probab=99.94  E-value=7.2e-27  Score=207.16  Aligned_cols=220  Identities=14%  Similarity=0.174  Sum_probs=159.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      ..++..+++|.+......  ...+.++.+...+  +.+++++....... .....|+||||++||+|.+++... ..+.+
T Consensus        25 ~~~~~~~~~k~~~~~~~~--~~~~~~e~~~l~~--l~~~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~   99 (256)
T cd05112          25 WLEKRKVAIKTIREGAMS--EEDFIEEAQVMMK--LSHPKLVQLYGVCT-ERSPICLVFEFMEHGCLSDYLRAQRGKFSQ   99 (256)
T ss_pred             EeCCCeEEEEECCCCCCC--HHHHHHHHHHHHh--CCCCCeeeEEEEEc-cCCceEEEEEcCCCCcHHHHHHhCccCCCH
Confidence            334567788877654332  2345566555555  35566665544433 345679999999999999988643 45677


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-C---CCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-F---TNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~---~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +||+++.++.+||+|||++...... .   ....++..|+|||++.+..++
T Consensus       100 ~~~~~~~~~l~~~l~~lH~~~i~h~dl~p~ni~i~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~aPe~~~~~~~~  179 (256)
T cd05112         100 ETLLGMCLDVCEGMAYLESSNVIHRDLAARNCLVGENQVVKVSDFGMTRFVLDDQYTSSTGTKFPVKWSSPEVFSFSKYS  179 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccccccceEEEcCCCeEEECCCcceeecccCcccccCCCccchhhcCHhHhccCCcC
Confidence            8888999999999999999999988    9999999999999999998754322 1   122345689999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++||||+||++|+|++ |..||....      ....+..+....                                   
T Consensus       180 ~~~Dv~slG~~l~el~~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------  218 (256)
T cd05112         180 SKSDVWSFGVLMWEVFSEGKTPYENRS------NSEVVETINAGF-----------------------------------  218 (256)
T ss_pred             hHHHHHHHHHHHHHHHcCCCCCCCcCC------HHHHHHHHhCCC-----------------------------------
Confidence            99999999999999998 999996433      122222211000                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                            ....+...+..+.+|+.+||+.+|++|||+.+++++
T Consensus       219 ------~~~~~~~~~~~~~~l~~~~l~~~p~~Rp~~~~~l~~  254 (256)
T cd05112         219 ------RLYKPRLASQSVYELMQHCWKERPEDRPSFSLLLHQ  254 (256)
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcccChhhCCCHHHHHHh
Confidence                  001112235788999999999999999999999864

Protein Tyrosine Kinase (PTK) family; Interleukin-2 (IL-2)-inducible T-cell kinase (Itk); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Itk (also known as Tsk or Emt) is a member of the Tec subfamily of proteins, which are cytoplasmic (or nonreceptor) tyr kinases with similarity to Src kinases in that they contain Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Unlike Src kinases, most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activ

>cd05038 PTKc_Jak_rpt2 Catalytic (repeat 2) domain of the Protein Tyrosine Kinases, Janus kinases

Probab=99.94  E-value=8.6e-27  Score=209.70  Aligned_cols=230  Identities=16%  Similarity=0.134  Sum_probs=164.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCccccccccc-ccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQNDSV-VNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~   98 (358)
                      ++..+|+|.+...........+.++.+.....  .+++++........ .....|+||||++||+|.+++.... .+++.
T Consensus        32 ~~~~~avK~~~~~~~~~~~~~~~~ei~~l~~l--~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~  109 (284)
T cd05038          32 TGEQVAVKSLNHSGEEQHRSDFEREIEILRTL--DHENIVKYKGVCEKPGGRSLRLIMEYLPSGSLRDYLQRHRDQINLK  109 (284)
T ss_pred             CceEEEEEEeccccchHHHHHHHHHHHHHHhC--CCCChheEEeeeecCCCCceEEEEecCCCCCHHHHHHhCccccCHH
Confidence            46678999988766554556677776665553  45555554433222 2456899999999999999887543 57888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.++|+|||++.......      ....++..|+|||.+.+..+
T Consensus       110 ~~~~~~~~l~~aL~~lH~~~i~H~dl~p~nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~  189 (284)
T cd05038         110 RLLLFSSQICKGMDYLGSQRYIHRDLAARNILVESEDLVKISDFGLAKVLPEDKDYYYVKEPGESPIFWYAPECLRTSKF  189 (284)
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHhEEEcCCCCEEEcccccccccccCCcceeccCCCCCcccccCcHHHccCCC
Confidence            899999999999999999999999    99999999999999999997654221      12234567999999998889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCC-----CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYD-----KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~-----~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +.++|||||||++++|++|..||.........     ........+.+.+...                           
T Consensus       190 ~~~~Di~slG~~l~el~tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------  242 (284)
T cd05038         190 SSASDVWSFGVTLYELFTYGDPSQSPPAEFLRMIGIAQGQMIVTRLLELLKEG---------------------------  242 (284)
T ss_pred             CcccchHHHhhhhheeeccCCCcccccchhccccccccccccHHHHHHHHHcC---------------------------
Confidence            99999999999999999999888543211100     0000000000000000                           


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                .....+..++..+.+|+.+||..||++|||+.|+++
T Consensus       243 ----------~~~~~~~~~~~~~~~li~~cl~~~p~~Rpt~~ei~~  278 (284)
T cd05038         243 ----------ERLPRPPSCPDEVYDLMKLCWEAEPQDRPSFADLIL  278 (284)
T ss_pred             ----------CcCCCCccCCHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                      001112334577899999999999999999999975

Protein Tyrosine Kinase (PTK) family; Janus kinase (Jak) subfamily; catalytic (c) domain (repeat 2). The Jak subfamily is composed of Jak1, Jak2, Jak3, TYK2, and similar proteins. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Jak subfamily proteins are cytoplasmic (or nonreceptor) tyr kinases containing an N-terminal FERM domain, followed by a Src homology 2 (SH2) domain, a pseudokinase domain, and a C-terminal tyr kinase catalytic domain. Most Jaks are expressed in a wide variety of tissues, except for Jak3, which is expressed only in hematopoietic cells. Jaks are crucial for cytokine receptor signaling. They are activated by aut

>cd05110 PTKc_HER4 Catalytic domain of the Protein Tyrosine Kinase, HER4

Probab=99.94  E-value=1.4e-26  Score=210.68  Aligned_cols=216  Identities=14%  Similarity=0.095  Sum_probs=160.4

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~~~  102 (358)
                      .+++|.+...........+.++......  ..|++++........  ...++++||+++|+|.+++.... .+.+..+..
T Consensus        38 ~vaiK~~~~~~~~~~~~~~~~e~~~~~~--l~h~niv~~~~~~~~--~~~~~v~e~~~~g~l~~~~~~~~~~~~~~~~~~  113 (303)
T cd05110          38 PVAIKILNETTGPKANVEFMDEALIMAS--MDHPHLVRLLGVCLS--PTIQLVTQLMPHGCLLDYVHEHKDNIGSQLLLN  113 (303)
T ss_pred             eEEEEeccccCCHHHHHHHHHHHHHHHh--CCCCCcccEEEEEcC--CCceeeehhcCCCCHHHHHHhcccCCCHHHHHH
Confidence            4688888776655555566666655554  367777776654432  34678999999999999876543 467778889


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......     .....++..|+|||++.+..++.++|
T Consensus       114 ~~~qi~~~L~~LH~~~ivH~dikp~Nill~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~y~~PE~~~~~~~~~~~D  193 (303)
T cd05110         114 WCVQIAKGMMYLEERRLVHRDLAARNVLVKSPNHVKITDFGLARLLEGDEKEYNADGGKMPIKWMALECIHYRKFTHQSD  193 (303)
T ss_pred             HHHHHHHHHHHHhhcCeeccccccceeeecCCCceEEccccccccccCcccccccCCCccccccCCHHHhccCCCChHHH
Confidence            99999999999999999998    9999999999999999999764322     12234577899999999888999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|+|++ |..||.+..       ...+..+......                                     
T Consensus       194 iwslG~~l~el~t~g~~p~~~~~-------~~~~~~~~~~~~~-------------------------------------  229 (303)
T cd05110         194 VWSYGVTIWELMTFGGKPYDGIP-------TREIPDLLEKGER-------------------------------------  229 (303)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCCC-------HHHHHHHHHCCCC-------------------------------------
Confidence            9999999999997 889986432       1111111110000                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                         ...+...+..+.+++.+||..||++|||++++++.
T Consensus       230 ---~~~~~~~~~~~~~li~~c~~~~p~~Rp~~~~l~~~  264 (303)
T cd05110         230 ---LPQPPICTIDVYMVMVKCWMIDADSRPKFKELAAE  264 (303)
T ss_pred             ---CCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence               01122235678899999999999999999998764

Protein Tyrosine Kinase (PTK) family; HER4 (ErbB4); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. HER4 is a member of the EGFR (HER, ErbB) subfamily of proteins, which are receptor tyr kinases (RTKs) containing an extracellular EGF-related ligand-binding region, a transmembrane helix, and a cytoplasmic region with a tyr kinase domain and a regulatory C-terminal tail. Unlike other tyr kinases, phosphorylation of the activation loop of EGFR proteins is not critical to their activation. Instead, they are activated by ligand-induced dimerization, leading to the phosphorylation of tyr residues in the C-terminal tail, which serve as bindin

>KOG1006 consensus Mitogen-activated protein kinase (MAPK) kinase MKK4 [Signal transduction mechanisms]

Probab=99.94  E-value=4.3e-28  Score=203.82  Aligned_cols=239  Identities=17%  Similarity=0.180  Sum_probs=166.3

Q ss_pred             cccccc-cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-
Q 045353           13 KTDKVV-TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-   90 (358)
Q Consensus        13 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-   90 (358)
                      .+.|+. .+.|.-.|+|..+..-.....+++.++........ .-++||..+..-. ..+..||+||+|.- ||..+-. 
T Consensus        79 ~V~KM~hk~sg~~mAVKrIr~~n~~keq~rll~e~d~~mks~-~cp~IVkfyGa~F-~EGdcWiCMELMd~-SlDklYk~  155 (361)
T KOG1006|consen   79 TVNKMLHKPSGKLMAVKRIRSNNIEKEQKRLLMEHDTVMKSS-NCPNIVKFYGALF-SEGDCWICMELMDI-SLDKLYKR  155 (361)
T ss_pred             hhhhhhcCccCcEEEEEEeeeccchHHHHHHHHHHHHHHhhc-CCcHHHHHhhhhh-cCCceeeeHHHHhh-hHHHHHHH
Confidence            455655 45666779998888777666677777765554431 3346776665544 46789999999874 3332211 


Q ss_pred             ----cccccChhhhhHHHHhhhhcccccc-CCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcch
Q 045353           91 ----DSVVNNESSRDNEVKNTSQGVKGHR-RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRC  159 (358)
Q Consensus        91 ----~~~~~~~~~~~~~l~~~~~~~~~~h-~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~a  159 (358)
                          ....+++.-+..+.-..+.++.|+. ..+||||    +|||++..|.+||||||++......  .+...|...|||
T Consensus       156 vy~vq~~~ipE~Ilg~ItvatV~AL~yLK~~lkiIHRDvKPSNILldr~G~vKLCDFGIcGqLv~SiAkT~daGCrpYmA  235 (361)
T KOG1006|consen  156 VYSVQKSRIPENILGHITVATVDALDYLKEELKIIHRDVKPSNILLDRHGDVKLCDFGICGQLVDSIAKTVDAGCRPYMA  235 (361)
T ss_pred             HHHHHhccCcHhhhhheeeeehhHHHHHHHHhhhhhccCChhheEEecCCCEeeecccchHhHHHHHHhhhccCCccccC
Confidence                2334444444444445555666654 3566666    8999999999999999999665443  355689999999


Q ss_pred             hHHHhCC--CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          160 PEVLLGS--KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       160 PE~l~~~--~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      ||.+...  +|+.++|+||||++|+|+.||..|+.++++     -.+++..+.  .|.+|.-. ..              
T Consensus       236 PERi~p~~~gyDiRSDvWSLGITL~EvAtG~fPyr~w~s-----vfeql~~Vv--~gdpp~l~-~~--------------  293 (361)
T KOG1006|consen  236 PERIDPSDKGYDIRSDVWSLGITLYEVATGNFPYRKWDS-----VFEQLCQVV--IGDPPILL-FD--------------  293 (361)
T ss_pred             hhccCCccCCcchhhhhhhhcceEeeeecCCCCcchHHH-----HHHHHHHHH--cCCCCeec-Cc--------------
Confidence            9999753  499999999999999999999999987652     233333332  23333211 00              


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                         .-.-..+..+..+|.-||..|-+.||..++++.+||++-
T Consensus       294 -------------------~~~~~~s~~~~~fintCl~Kd~~~Rpky~~Lk~~~fyr~  332 (361)
T KOG1006|consen  294 -------------------KECVHYSFSMVRFINTCLIKDRSDRPKYDDLKKFPFYRM  332 (361)
T ss_pred             -------------------ccccccCHHHHHHHHHHhhcccccCcchhhhhcCchhhh
Confidence                               001124678899999999999999999999999999985

>cd05086 PTKc_Aatyk2 Catalytic domain of the Protein Tyrosine Kinase, Apoptosis-associated tyrosine kinase 2

Probab=99.94  E-value=2.1e-26  Score=205.89  Aligned_cols=220  Identities=12%  Similarity=0.102  Sum_probs=151.5

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----ccChhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----VNNESS   99 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----~~~~~~   99 (358)
                      .+++|.+....+......+.++......  +.|++++....... .....|+||||++||+|.+++....    ......
T Consensus        24 ~~~~k~~~~~~~~~~~~~~~~e~~~~~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  100 (268)
T cd05086          24 RVVVKELKANASSKEQNEFLQQGDPYRI--LQHPNILQCLGQCV-EAIPYLLVFEYCELGDLKSYLSQEQWHRRNSQLLL  100 (268)
T ss_pred             eEEEEEecCCCChHHHHHHHHHHHHHhc--cCCcchhheEEEec-CCCccEEEEecCCCCcHHHHHHhhhcccccccHHH
Confidence            3455655554444445556565544443  46677776665443 3456899999999999999886432    234556


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhC-----
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLG-----  165 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~-----  165 (358)
                      +..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||++.....     .....+|+..|+|||++..     
T Consensus       101 ~~~~~~~i~~al~~lH~~~i~H~dikp~nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  180 (268)
T cd05086         101 LQRMACEIAAGVTHMHKHNFLHSDLALRNCFLTSDLTVKVGDYGIGPSRYKEDYIETEDDKCVPLRWLAPELVGEFHGGL  180 (268)
T ss_pred             HHHHHHHHHHHHHHHHHCCeeccCCccceEEEcCCccEEecccccccccCcchhhhcccCCcCcccccCchhcccccCcc
Confidence            77889999999999999999998    999999999999999999854321     1234578899999999853     


Q ss_pred             --CCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          166 --SKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       166 --~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                        ..++.++|||||||++|+|++ |..||...+      +.+.+..+..--...   .                      
T Consensus       181 ~~~~~~~~~DiwslG~~l~el~~~~~~p~~~~~------~~~~~~~~~~~~~~~---~----------------------  229 (268)
T cd05086         181 ITAEQTKPSNVWALGVTLWELFENAAQPYSHLS------DREVLNHVIKDQQVK---L----------------------  229 (268)
T ss_pred             ccCCCCCcchhHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhhcccc---c----------------------
Confidence              235788999999999999997 567885433      222222221100000   0                      


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                 .........+..+.+++..|+ .+|++|||++++++
T Consensus       230 -----------~~~~~~~~~~~~~~~l~~~c~-~~P~~Rp~~~~i~~  264 (268)
T cd05086         230 -----------FKPQLELPYSERWYEVLQFCW-LSPEKRATAEEVHR  264 (268)
T ss_pred             -----------CCCccCCCCcHHHHHHHHHHh-hCcccCCCHHHHHH
Confidence                       000112224567888999999 68999999999965

Protein Tyrosine Kinase (PTK) family; Apoptosis-associated tyrosine kinase 2 (Aatyk2); catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Aatyk2 is a member of the Aatyk subfamily of proteins, which are receptor kinases containing a transmembrane segment and a long C-terminal cytoplasmic tail with a catalytic domain. Aatyk2 is also called lemur tyrosine kinase 2 (Lmtk2) or brain-enriched kinase (Brek). It is expressed at high levels in early postnatal brain, and has been shown to play a role in nerve growth factor (NGF) signaling. Studies with knockout mice reveal that Aatyk2 is essential for late stage

>KOG4257 consensus Focal adhesion tyrosine kinase FAK, contains FERM domain [Signal transduction mechanisms]

Probab=99.94  E-value=3.9e-27  Score=218.27  Aligned_cols=213  Identities=14%  Similarity=0.139  Sum_probs=176.0

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~  102 (358)
                      -||+|.-..+...+.+.+|..++-...+  +.|++|+.+-....  +...|||||++.-|.|.+++.. ...+.......
T Consensus       420 aVAvKtCK~d~t~d~tekflqEa~iMrn--fdHphIikLIGv~~--e~P~WivmEL~~~GELr~yLq~nk~sL~l~tL~l  495 (974)
T KOG4257|consen  420 AVAVKTCKTDCTPDDTEKFLQEASIMRN--FDHPHIIKLIGVCV--EQPMWIVMELAPLGELREYLQQNKDSLPLRTLTL  495 (974)
T ss_pred             eeeeehhccCCChhhHHHHHHHHHHHHh--CCCcchhheeeeee--ccceeEEEecccchhHHHHHHhccccchHHHHHH
Confidence            5899999999999999999888877777  68888888766544  4678999999999999999984 45677788889


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC--CCCcc--CCCcchhHHHhCCCCCcchhh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQ--TRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~--~~~~g--t~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +..|++.++.|+|+.+.+||    .|||+.+...|||+|||++++.....  ....|  ...|||||-+.-..++.++||
T Consensus       496 y~~Qi~talaYLeSkrfVHRDIAaRNiLVsSp~CVKLaDFGLSR~~ed~~yYkaS~~kLPIKWmaPESINfRrFTtASDV  575 (974)
T KOG4257|consen  496 YCYQICTALAYLESKRFVHRDIAARNILVSSPQCVKLADFGLSRYLEDDAYYKASRGKLPIKWMAPESINFRRFTTASDV  575 (974)
T ss_pred             HHHHHHHHHHHHHhhchhhhhhhhhheeecCcceeeecccchhhhccccchhhccccccceeecCccccchhcccchhhH
Confidence            99999999999999999999    89999999999999999999876542  22233  457999999999899999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |-|||.+||++. |..||.+-.+.+..             |.+.                                  .-
T Consensus       576 WMFgVCmWEIl~lGvkPfqgvkNsDVI-------------~~iE----------------------------------nG  608 (974)
T KOG4257|consen  576 WMFGVCMWEILSLGVKPFQGVKNSDVI-------------GHIE----------------------------------NG  608 (974)
T ss_pred             HHHHHHHHHHHHhcCCccccccccceE-------------EEec----------------------------------CC
Confidence            999999999986 99999876543210             0000                                  00


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHH
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC  287 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~el  287 (358)
                      ...+.|+.+++.+..|+.+||.+||.+||++.|+
T Consensus       609 eRlP~P~nCPp~LYslmskcWayeP~kRPrftei  642 (974)
T KOG4257|consen  609 ERLPCPPNCPPALYSLMSKCWAYEPSKRPRFTEI  642 (974)
T ss_pred             CCCCCCCCCChHHHHHHHHHhccCcccCCcHHHH
Confidence            1346788899999999999999999999998775

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.93  E-value=1.2e-26  Score=236.72  Aligned_cols=176  Identities=13%  Similarity=0.135  Sum_probs=129.9

Q ss_pred             CCCCcccccCCCCCccccccc-ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC----------------
Q 045353           71 PDNFSVDTIPNGVSVEERQND-SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV----------------  129 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~----------------  129 (358)
                      ..++.+|||+ +++|.+++.. ...+++.++..++.|++.|+.|+|+.+|+||    +||||+.                
T Consensus        53 ~~~~~~~e~~-~~~L~~~l~~~~~~~~~~~~~~i~~qi~~al~~lH~~gIvHrDlKP~NiLl~~~~~~k~~d~~~~~~~~  131 (793)
T PLN00181         53 DSIVRALECE-DVSLRQWLDNPDRSVDAFECFHVFRQIVEIVNAAHSQGIVVHNVRPSCFVMSSFNHVSFIESASCSDSG  131 (793)
T ss_pred             chhhhhhccC-CccHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhCCeeeccCCchhEEEcccCcEEEeeccccCccc
Confidence            4567788876 6699999965 3458889999999999999999999999999    9999954                


Q ss_pred             ---CCcEEEEecCCceecCCC-------------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcC
Q 045353          130 ---DVQCKLVDFGNACWTHKQ-------------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG  187 (358)
Q Consensus       130 ---~~~vkL~DFG~a~~~~~~-------------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g  187 (358)
                         ++.+||+|||+++.....                   ....+||++|||||++.+..|+.++|||||||+||||++|
T Consensus       132 ~~~~~~~ki~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~sDVwSlGviL~ELl~~  211 (793)
T PLN00181        132 SDEDATTKSREIGSSRREEILSERRIEKLEEVKKQPFPMKQILAMEMSWYTSPEEDNGSSSNCASDVYRLGVLLFELFCP  211 (793)
T ss_pred             ccccCcccccccccccccccccccchhhhhccccCCCcccccccCCCcceEChhhhccCCCCchhhhhhHHHHHHHHhhC
Confidence               445666777776532100                   0123689999999999999999999999999999999999


Q ss_pred             CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHH
Q 045353          188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA  267 (358)
Q Consensus       188 ~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (358)
                      .+||...        ...+..+...  ..|+.                                       .....+...
T Consensus       212 ~~~~~~~--------~~~~~~~~~~--~~~~~---------------------------------------~~~~~~~~~  242 (793)
T PLN00181        212 VSSREEK--------SRTMSSLRHR--VLPPQ---------------------------------------ILLNWPKEA  242 (793)
T ss_pred             CCchhhH--------HHHHHHHHHh--hcChh---------------------------------------hhhcCHHHH
Confidence            8877421        1111111100  00100                                       000123456


Q ss_pred             HHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          268 DFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       268 ~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      +++.+||+.||.+|||+.|+|+||||...
T Consensus       243 ~~~~~~L~~~P~~Rps~~eil~h~~~~~~  271 (793)
T PLN00181        243 SFCLWLLHPEPSCRPSMSELLQSEFINEP  271 (793)
T ss_pred             HHHHHhCCCChhhCcChHHHhhchhhhhh
Confidence            88999999999999999999999999863

>KOG0199 consensus ACK and related non-receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.93  E-value=1.8e-26  Score=216.32  Aligned_cols=218  Identities=16%  Similarity=0.112  Sum_probs=178.0

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~~~  100 (358)
                      ++||+|+|..+.-......|.|++.....  +.|.++++++...-.  ..+-+|||++.+|||.+++..  ...+-....
T Consensus       139 V~VAVKclr~d~l~~~mddflrEas~M~~--L~H~hliRLyGvVl~--qp~mMV~ELaplGSLldrLrka~~~~llv~~L  214 (1039)
T KOG0199|consen  139 VNVAVKCLRDDSLNAIMDDFLREASHMLK--LQHPHLIRLYGVVLD--QPAMMVFELAPLGSLLDRLRKAKKAILLVSRL  214 (1039)
T ss_pred             EeEEEEeccCCccchhHHHHHHHHHHHHh--ccCcceeEEeeeecc--chhhHHhhhcccchHHHHHhhccccceeHHHH
Confidence            47899999998766688899999777766  578888998887664  567889999999999999985  445667788


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCC------ccCCCcchhHHHhCCCCCc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~------~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.||..|+.|+-..+.|||    .|+||.....|||||||+.+........+      --...|+|||.|....++.
T Consensus       215 cdya~QiA~aM~YLeskrlvHRDLAARNlllasprtVKI~DFGLmRaLg~ned~Yvm~p~rkvPfAWCaPEsLrh~kFSh  294 (1039)
T KOG0199|consen  215 CDYAMQIAKAMQYLESKRLVHRDLAARNLLLASPRTVKICDFGLMRALGENEDMYVMAPQRKVPFAWCAPESLRHRKFSH  294 (1039)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhhhhheecccceeeeecccceeccCCCCcceEecCCCcCcccccCHhHhccccccc
Confidence            9999999999999999999999    89999999999999999998765432222      2245799999999999999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|+|++||++|||++ |..||.|..+      .+.|..|-                                       
T Consensus       295 aSDvWmyGVTiWEMFtyGEePW~G~~g------~qIL~~iD---------------------------------------  329 (1039)
T KOG0199|consen  295 ASDVWMYGVTIWEMFTYGEEPWVGCRG------IQILKNID---------------------------------------  329 (1039)
T ss_pred             cchhhhhhhhHHhhhccCCCCCCCCCH------HHHHHhcc---------------------------------------
Confidence            9999999999999998 7899987662      22222221                                       


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                        ..+.+.-++.++.++.+++..||..+|.+|||+..|.+.-
T Consensus       330 --~~erLpRPk~csedIY~imk~cWah~paDRptFsair~~~  369 (1039)
T KOG0199|consen  330 --AGERLPRPKYCSEDIYQIMKNCWAHNPADRPTFSAIREDL  369 (1039)
T ss_pred             --ccccCCCCCCChHHHHHHHHHhccCCccccccHHHHHHhH
Confidence              0113345677899999999999999999999998885433

>KOG1027 consensus Serine/threonine protein kinase and endoribonuclease ERN1/IRE1, sensor of the unfolded protein response pathway [Signal transduction mechanisms]

Probab=99.93  E-value=4.5e-27  Score=224.52  Aligned_cols=221  Identities=16%  Similarity=0.235  Sum_probs=157.5

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc----Ch
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN----NE   97 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~----~~   97 (358)
                      |+.||+|.+-..+-.-..    |+.+- -+.+-.|+++++.+-.+. ...-.||+.|+|.- +|+++++....-    ..
T Consensus       533 ~R~VAVKrll~e~~~~A~----rEi~l-L~eSD~H~NviRyyc~E~-d~qF~YIalELC~~-sL~dlie~~~~d~~~~~~  605 (903)
T KOG1027|consen  533 GREVAVKRLLEEFFDFAQ----REIQL-LQESDEHPNVIRYYCSEQ-DRQFLYIALELCAC-SLQDLIESSGLDVEMQSD  605 (903)
T ss_pred             CceehHHHHhhHhHHHHH----HHHHH-HHhccCCCceEEEEeecc-CCceEEEEehHhhh-hHHHHHhccccchhhccc
Confidence            456777777665533222    22222 244457778888766555 35678999999975 788888864211    11


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccC---C--CcEEEEecCCceecCCC------CCCCccCCCcchhHH
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---D--VQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEV  162 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~--~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~  162 (358)
                      ......+.|+..|+.++|+.+|+||    +||||+.   +  ..++|+|||+|+.....      ..+..||-+|+|||+
T Consensus       606 i~~~~~l~q~~~GlaHLHsl~iVHRDLkPQNILI~~~~~~~~~ra~iSDfglsKkl~~~~sS~~r~s~~sGt~GW~APE~  685 (903)
T KOG1027|consen  606 IDPISVLSQIASGLAHLHSLKIVHRDLKPQNILISVPSADGTLRAKISDFGLSKKLAGGKSSFSRLSGGSGTSGWQAPEQ  685 (903)
T ss_pred             ccHHHHHHHHHHHHHHHHhcccccccCCCceEEEEccCCCcceeEEecccccccccCCCcchhhcccCCCCcccccCHHH
Confidence            4557889999999999999999999    9999976   3  46799999999876432      345579999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcC-CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATG-DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      +....-+.++||||+||++|+.++| .+||......    +.       .++..                  ...+    
T Consensus       686 L~~~~~~~avDiFslGCvfyYvltgG~HpFGd~~~R----~~-------NIl~~------------------~~~L----  732 (903)
T KOG1027|consen  686 LREDRKTQAVDIFSLGCVFYYVLTGGSHPFGDSLER----QA-------NILTG------------------NYTL----  732 (903)
T ss_pred             HhccccCcccchhhcCceEEEEecCCccCCCchHHh----hh-------hhhcC------------------ccce----
Confidence            9998888899999999999999986 8999532211    00       00000                  0000    


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                    ....+....++.+||.+||.+||..||||.+||.||+|...
T Consensus       733 --------------~~L~~~~d~eA~dLI~~ml~~dP~~RPsa~~VL~HPlFW~~  773 (903)
T KOG1027|consen  733 --------------VHLEPLPDCEAKDLISRMLNPDPQLRPSATDVLNHPLFWDS  773 (903)
T ss_pred             --------------eeeccCchHHHHHHHHHhcCCCcccCCCHHHHhCCCccCCh
Confidence                          00111111278999999999999999999999999999863

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=99.93  E-value=1.1e-26  Score=229.39  Aligned_cols=177  Identities=20%  Similarity=0.294  Sum_probs=139.4

Q ss_pred             CCCCcccccCCCCCccccccccccc-ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVN-NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      ..+||-||||+.-.|.+++..+-.. .......++++|++|+.|+|+.|+|||    .||++++++.|||+|||+|....
T Consensus       669 ~~LYIQMEyCE~~ll~~iI~~N~~~~~~d~~wrLFreIlEGLaYIH~~giIHRDLKP~NIFLd~~~~VKIGDFGLAt~~~  748 (1351)
T KOG1035|consen  669 LILYIQMEYCEKTLLRDIIRRNHFNSQRDEAWRLFREILEGLAYIHDQGIIHRDLKPRNIFLDSRNSVKIGDFGLATDLK  748 (1351)
T ss_pred             eEEEEEHhhhhhhHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHhCceeeccCCcceeEEcCCCCeeecccccchhhh
Confidence            6789999999999999999877665 566888999999999999999999999    89999999999999999996510


Q ss_pred             ---------------------CCCCCCccCCCcchhHHHhCCC---CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCC
Q 045353          146 ---------------------KQFTNDIQTRQYRCPEVLLGSK---YSTSADLWSFACICFELATGDVLFDPHSGDNYDK  201 (358)
Q Consensus       146 ---------------------~~~~~~~gt~~Y~aPE~l~~~~---~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~  201 (358)
                                           ...++.+||..|+|||++.+..   |+.++||||||||||||+.-   |.+.       
T Consensus       749 ~~~~~~d~~~~~~~~~~g~~~~~~Ts~VGTalYvAPEll~~~~~~~Yn~KiDmYSLGIVlFEM~yP---F~Ts-------  818 (1351)
T KOG1035|consen  749 ENLESIDQDLSFSTNRAGSNDGDLTSQVGTALYVAPELLSDTSSNKYNSKIDMYSLGIVLFEMLYP---FGTS-------  818 (1351)
T ss_pred             hhhhhHhhccCccccccCCCCcccccccceeeeecHHHhcccccccccchhhhHHHHHHHHHHhcc---CCch-------
Confidence                                 1245669999999999998755   99999999999999999853   6432       


Q ss_pred             cHHHHHHHHHHh-CCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC
Q 045353          202 DEDHLALMMELL-GMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK  280 (358)
Q Consensus       202 ~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  280 (358)
                       .+-...+..+- |.+|..                                    ..+.....+.-..+|++||+.||.+
T Consensus       819 -MERa~iL~~LR~g~iP~~------------------------------------~~f~~~~~~~e~slI~~Ll~hdP~k  861 (1351)
T KOG1035|consen  819 -MERASILTNLRKGSIPEP------------------------------------ADFFDPEHPEEASLIRWLLSHDPSK  861 (1351)
T ss_pred             -HHHHHHHHhcccCCCCCC------------------------------------cccccccchHHHHHHHHHhcCCCcc
Confidence             22222222211 122211                                    1122223445568999999999999


Q ss_pred             CCCHHHHhcCcCcC
Q 045353          281 RPTAAQCLSHPWMS  294 (358)
Q Consensus       281 R~ta~elL~hpwf~  294 (358)
                      ||||.|+|++.||-
T Consensus       862 RPtA~eLL~s~llp  875 (1351)
T KOG1035|consen  862 RPTATELLNSELLP  875 (1351)
T ss_pred             CCCHHHHhhccCCC
Confidence            99999999999997

>cd08528 STKc_Nek10 Catalytic domain of the Protein Serine/Threonine Kinase, Never In Mitosis gene A-related kinase 10

Probab=99.93  E-value=1.2e-25  Score=200.87  Aligned_cols=190  Identities=19%  Similarity=0.224  Sum_probs=144.0

Q ss_pred             cCCCccccccCCCCCCCCCCCcccccCCCCCcccccc----cccccChhhhhHHHHhhhhccccccC-CCCCCc----cc
Q 045353           54 AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN----DSVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KN  124 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~N  124 (358)
                      ..+++++....... .+...|+||||++|++|.+++.    ....+++..+..++.+++.++.++|+ .+++|+    +|
T Consensus        66 ~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~l~~lh~~~~i~H~dl~~~n  144 (269)
T cd08528          66 LRHPNIVRYYKTFL-ENDRLYIVMDLIEGAPLGEHFNSLKEKKQRFTEERIWNIFVQMVLALRYLHKEKRIVHRDLTPNN  144 (269)
T ss_pred             CCCCCeeeEEeeEc-cCCeEEEEEecCCCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHhccCCceeecCCCHHH
Confidence            35666666555443 3567899999999999998764    23457788899999999999999996 678888    89


Q ss_pred             ccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCc
Q 045353          125 LLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKD  202 (358)
Q Consensus       125 ILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~  202 (358)
                      ||++.++.+||+|||++......  .....|+..|+|||++.+..++.++|+|||||++|+|++|.+||....      .
T Consensus       145 il~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~Pe~~~~~~~~~~~Dv~slG~ll~~l~~g~~p~~~~~------~  218 (269)
T cd08528         145 IMLGEDDKVTITDFGLAKQKQPESKLTSVVGTILYSCPEIVKNEPYGEKADVWAFGCILYQMCTLQPPFYSTN------M  218 (269)
T ss_pred             EEECCCCcEEEecccceeecccccccccccCcccCcChhhhcCCCCchHHHHHHHHHHHHHHHhCCCcccccC------H
Confidence            99999999999999999765432  344578999999999998889999999999999999999999996332      1


Q ss_pred             HHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC
Q 045353          203 EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP  282 (358)
Q Consensus       203 ~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  282 (358)
                      ......+......+                                        ......+..+.+||.+||+.||++||
T Consensus       219 ~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~l~~li~~cl~~~p~~Rp  258 (269)
T cd08528         219 LSLATKIVEAVYEP----------------------------------------LPEGMYSEDVTDVITSCLTPDAEARP  258 (269)
T ss_pred             HHHHHHHhhccCCc----------------------------------------CCcccCCHHHHHHHHHHCCCCCccCC
Confidence            11111111000000                                        00112357889999999999999999


Q ss_pred             CHHHHhcC
Q 045353          283 TAAQCLSH  290 (358)
Q Consensus       283 ta~elL~h  290 (358)
                      |+.|+..+
T Consensus       259 ~~~e~~~~  266 (269)
T cd08528         259 DIIQVSAM  266 (269)
T ss_pred             CHHHHHHH
Confidence            99998754

Serine/Threonine Kinases (STKs), Never In Mitosis gene A (NIMA)-related kinase 10 (Nek10) subfamily, catalytic (c) domain. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. The Nek10 subfamily is one of a family of 11 different Neks (Nek1-11) that are involved in cell cycle control. The Nek family is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase. No function has yet been ascribed to Nek10. The gene encoding Nek10 is a putative causative gene for breast cancer; it is located within a breast cancer susceptibility loci on chromosome 3p24.

>cd05074 PTKc_Tyro3 Catalytic domain of the Protein Tyrosine Kinase, Tyro3

Probab=99.93  E-value=6.9e-26  Score=202.77  Aligned_cols=222  Identities=13%  Similarity=0.110  Sum_probs=161.1

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCccccccc--
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQND--   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~--   91 (358)
                      .+|..+|+|.+...... .....+.++.+...+.  .+++++.........     ....+++++|+.+|+|.+++..  
T Consensus        25 ~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  102 (273)
T cd05074          25 GSFQKVAVKMLKADIFSSSDIEEFLREAACMKEF--DHPNVIKLIGVSLRSRAKGRLPIPMVILPFMKHGDLHTFLLMSR  102 (273)
T ss_pred             CCceEEEEEEeccccCChHHHHHHHHHHHHHhcC--CCCCcceEEEEEccCCCCCcccceEEEEecCCCCcHHHHHHHhc
Confidence            35678999988776543 3455666776665553  566666666533221     1234789999999999876532  


Q ss_pred             ----ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcc
Q 045353           92 ----SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYR  158 (358)
Q Consensus        92 ----~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~  158 (358)
                          ...++...+..++.+++.++.|+|+.+++|+    +|||+++++.+||+|||++......     .....+++.|+
T Consensus       103 ~~~~~~~l~~~~~~~~~~~i~~~l~~lH~~~i~H~dikp~nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~  182 (273)
T cd05074         103 IGEEPFTLPLQTLVRFMIDIASGMEYLSSKNFIHRDLAARNCMLNENMTVCVADFGLSKKIYSGDYYRQGCASKLPVKWL  182 (273)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCEeecccchhhEEEcCCCCEEECcccccccccCCcceecCCCccCchhhc
Confidence                1245677889999999999999999999998    9999999999999999999764321     12234567899


Q ss_pred             hhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          159 CPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       159 aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      +||.+.+..++.++|||||||++|+|++ |.+||.+..      .......+..  +.                      
T Consensus       183 ~pe~~~~~~~~~~sDi~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~----------------------  232 (273)
T cd05074         183 ALESLADNVYTTHSDVWAFGVTMWEIMTRGQTPYAGVE------NSEIYNYLIK--GN----------------------  232 (273)
T ss_pred             CHhHHhcCccchhhhhHHHHHHHHHHhhCCCCCCCCCC------HHHHHHHHHc--CC----------------------
Confidence            9999998889999999999999999998 889886432      1111111110  00                      


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                       ....+...+..+.+++.+||..+|++|||+.+++++
T Consensus       233 -----------------~~~~~~~~~~~~~~l~~~~l~~~p~~Rps~~~~~~~  268 (273)
T cd05074         233 -----------------RLKQPPDCLEDVYELMCQCWSPEPKCRPSFQHLRDQ  268 (273)
T ss_pred             -----------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                             001122345688999999999999999999999763

Protein Tyrosine Kinase (PTK) family; Tyro3; catalytic (c) domain. The PTKc family is part of a larger superfamily that includes the catalytic domains of other kinases such as protein serine/threonine kinases, RIO kinases, and phosphoinositide 3-kinase (PI3K). PTKs catalyze the transfer of the gamma-phosphoryl group from ATP to tyrosine (tyr) residues in protein substrates. Tyro3 (or Sky) is a member of the Axl subfamily, which is composed of receptor tyr kinases (RTKs) containing an extracellular ligand-binding region with two immunoglobulin-like domains followed by two fibronectin type III repeats, a transmembrane segment, and an intracellular catalytic domain. Binding to their ligands, Gas6 and protein S, leads to receptor dimerization, autophosphorylation, activation, and intracellular signaling. Tyro3 is predominantly expressed in the central nervous system and the brain, and functions as a neurotrophic fac

>KOG2345 consensus Serine/threonine protein kinase/TGF-beta stimulated factor [Transcription; Lipid transport and metabolism; Signal transduction mechanisms]

Probab=99.93  E-value=3.8e-26  Score=190.34  Aligned_cols=208  Identities=16%  Similarity=0.241  Sum_probs=147.9

Q ss_pred             hhhHHhhHHHHHhhhhccCCCccccccCC----CCCCCCCCCcccccCCCCCccccccc----ccccChhhhhHHHHhhh
Q 045353           37 NQKKKVKKKAKKAAQGCAGTEAFDESEAD----SKPSSPDNFSVDTIPNGVSVEERQND----SVVNNESSRDNEVKNTS  108 (358)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iv~e~~~gg~L~~~~~~----~~~~~~~~~~~~l~~~~  108 (358)
                      ....+..|++.--..  +.++++.++.+.    ........||+..|...|+|.+.++.    ....++.++..++.+++
T Consensus        60 ~~~e~~~rEid~~rk--f~s~~vl~l~dh~l~~~~D~~~~~yll~Pyy~~Gsl~d~i~~~k~kg~~~sE~~iL~if~gic  137 (302)
T KOG2345|consen   60 EDIEEALREIDNHRK--FNSPNVLRLVDHQLREEKDGKHEAYLLLPYYKRGSLLDEIERLKIKGNFVSEAQILWIFLGIC  137 (302)
T ss_pred             HHHHHHHHHHHHHHh--hCCcchHHHHHHHHHhhccCceeEEEEeehhccccHHHHHHHHhhcCCccCHHHHHHHHHHHH
Confidence            333444455444443  344554444332    22245779999999999999997763    34789999999999999


Q ss_pred             hccccccCCC--CCCc----ccccccCCCcEEEEecCCceecCCC------------CCCCccCCCcchhHHHhC---CC
Q 045353          109 QGVKGHRRPS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQ------------FTNDIQTRQYRCPEVLLG---SK  167 (358)
Q Consensus       109 ~~~~~~h~~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------------~~~~~gt~~Y~aPE~l~~---~~  167 (358)
                      +|+.++|+..  .+||    .|||+.+++.++|.|||.+....-.            -....+|..|+|||++.-   ..
T Consensus       138 ~gL~~lH~~~~~yAH~DiKP~NILls~~~~~vl~D~GS~~~a~i~i~~~~~a~~lQe~a~e~Ct~pyRAPELf~vk~~~t  217 (302)
T KOG2345|consen  138 RGLEALHEKEPPYAHRDIKPANILLSDSGLPVLMDLGSATQAPIQIEGSRQALRLQEWAEERCTIPYRAPELFNVKSHCT  217 (302)
T ss_pred             HHHHHHhccCCcccccCCCcceeEecCCCceEEEeccCccccceEeechHHHHHHHHHHHHhCCCcccCchheecccCcc
Confidence            9999999988  6777    8999999999999999998654311            122357899999999864   34


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      .+.++|||||||+||.|+.|..||...-..+               |..            .....++.      .    
T Consensus       218 i~ertDIWSLGCtLYa~mf~~sPfe~~~~~G---------------gSl------------aLAv~n~q------~----  260 (302)
T KOG2345|consen  218 ITERTDIWSLGCTLYAMMFGESPFERIYQQG---------------GSL------------ALAVQNAQ------I----  260 (302)
T ss_pred             cccccchhhhhHHHHHHHHcCCcchHHhhcC---------------CeE------------EEeeeccc------c----
Confidence            6899999999999999999999995221100               000            00000000      0    


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                             .++-....+..+.+||.+||+.||.+|||+.+++.+
T Consensus       261 -------s~P~~~~yse~l~~lik~mlqvdP~qRP~i~~ll~~  296 (302)
T KOG2345|consen  261 -------SIPNSSRYSEALHQLIKSMLQVDPNQRPTIPELLSK  296 (302)
T ss_pred             -------ccCCCCCccHHHHHHHHHHhcCCcccCCCHHHHHHH
Confidence                   011122357899999999999999999999999864

>PLN03224 probable serine/threonine protein kinase; Provisional

Probab=99.93  E-value=1e-25  Score=215.01  Aligned_cols=192  Identities=16%  Similarity=0.206  Sum_probs=132.1

Q ss_pred             CCCCCCcccccCCCCCccccccccc------------------------ccChhhhhHHHHhhhhccccccCCCCCCc--
Q 045353           69 SSPDNFSVDTIPNGVSVEERQNDSV------------------------VNNESSRDNEVKNTSQGVKGHRRPSRATR--  122 (358)
Q Consensus        69 ~~~~~~iv~e~~~gg~L~~~~~~~~------------------------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr--  122 (358)
                      ..+..|+||||+++|+|.+++....                        ......+..++.+++.++.++|+.+++||  
T Consensus       256 ~~~~~~LV~Ey~~~gsL~~~L~~~~~~~~~~L~e~l~~g~~l~~~~~~~~~~~~~~~~i~~ql~~aL~~lH~~~ivHrDL  335 (507)
T PLN03224        256 TKGSQWLVWKFESDATLGDALDGKLGPFPGCLEEFMMAGKKIPDNMPQDKRDINVIKGVMRQVLTGLRKLHRIGIVHRDI  335 (507)
T ss_pred             cCCceEEEEEcCCCCcHHHHHhhccCCCcchHHHHHhcCCchhhhcccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCC
Confidence            3467899999999999999875321                        12345677889999999999999999999  


Q ss_pred             --ccccccCCCcEEEEecCCceecCCC--CCC--CccCCCcchhHHHhCCC--------------------CC--cchhh
Q 045353          123 --KNLLAAVDVQCKLVDFGNACWTHKQ--FTN--DIQTRQYRCPEVLLGSK--------------------YS--TSADL  174 (358)
Q Consensus       123 --~NILl~~~~~vkL~DFG~a~~~~~~--~~~--~~gt~~Y~aPE~l~~~~--------------------~~--~~~Di  174 (358)
                        +|||++.++.+||+|||++......  ...  ..+|+.|+|||++....                    |+  ..+||
T Consensus       336 Kp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~g~~tp~Y~aPE~l~~~~~~~~~~~~~~~~~l~~~~~~yg~~~~~Dv  415 (507)
T PLN03224        336 KPENLLVTVDGQVKIIDFGAAVDMCTGINFNPLYGMLDPRYSPPEELVMPQSCPRAPAPAMAALLSPFAWLYGRPDLFDS  415 (507)
T ss_pred             chHhEEECCCCcEEEEeCcCccccccCCccCccccCCCcceeChhhhcCCCCCCccchhhhhhhhhhhHHhcCCCCccch
Confidence              8999999999999999999654322  122  24488999999986432                    22  24799


Q ss_pred             hhhhHHHHhhhcCCc-ccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELATGDV-LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~g~~-pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||+||++++|++|.. ||......+         ...+.....           ...|...               ....
T Consensus       416 wSlGvil~em~~~~l~p~~~~~~f~---------~~~~~~~~~-----------~~~~r~~---------------~~~~  460 (507)
T PLN03224        416 YTAGVLLMQMCVPELRPVANIRLFN---------TELRQYDND-----------LNRWRMY---------------KGQK  460 (507)
T ss_pred             hhHHHHHHHHHhCCCCCccchhhhh---------hHHhhccch-----------HHHHHhh---------------cccC
Confidence            999999999999874 664221000         000000000           0000000               0000


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCC---CCCCCHHHHhcCcCcCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVP---EKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP---~~R~ta~elL~hpwf~~  295 (358)
                      -.+......+..+.||+.+||..+|   .+|+|++|+|+||||..
T Consensus       461 ~~~~~~d~~s~~~~dLi~~LL~~~~~~~~~RlSa~eaL~Hp~f~~  505 (507)
T PLN03224        461 YDFSLLDRNKEAGWDLACKLITKRDQANRGRLSVGQALSHRFFLP  505 (507)
T ss_pred             CCcccccccChHHHHHHHHHhccCCCCcccCCCHHHHhCCCCcCC
Confidence            0112234457889999999999876   68999999999999974

>KOG4278 consensus Protein tyrosine kinase [Signal transduction mechanisms]

Probab=99.92  E-value=8.7e-26  Score=209.32  Aligned_cols=215  Identities=16%  Similarity=0.179  Sum_probs=168.7

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccChhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~~~~  100 (358)
                      .-||+|.|..+..+-.  .|.+++..+..  ..|+++|.+..+.+. ..-+|||+|||..|.|.+++....  .......
T Consensus       293 lTvAVKtLKEDtMeve--EFLkEAAvMKe--ikHpNLVqLLGVCT~-EpPFYIiTEfM~yGNLLdYLRecnr~ev~avvL  367 (1157)
T KOG4278|consen  293 LTVAVKTLKEDTMEVE--EFLKEAAVMKE--IKHPNLVQLLGVCTH-EPPFYIITEFMCYGNLLDYLRECNRSEVPAVVL  367 (1157)
T ss_pred             eeeehhhhhhcchhHH--HHHHHHHHHHh--hcCccHHHHhhhhcc-CCCeEEEEecccCccHHHHHHHhchhhcchhHH
Confidence            4578888887766543  34555555544  578899999888765 467899999999999999998543  3556677


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CCCCcc---CCCcchhHHHhCCCCCcch
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQ---TRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~~~~g---t~~Y~aPE~l~~~~~~~~~  172 (358)
                      ..+..||.+++.|+-...+|||    .|+|+.++..|||+|||+++.+... ++...|   ...|.|||-|....++.++
T Consensus       368 lyMAtQIsSaMeYLEkknFIHRDLAARNCLVgEnhiVKvADFGLsRlMtgDTYTAHAGAKFPIKWTAPEsLAyNtFSiKS  447 (1157)
T KOG4278|consen  368 LYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHIVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNTFSIKS  447 (1157)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhhhhhccccccceEEeeccchhhhhcCCceecccCccCcccccCcccccccccccch
Confidence            7888999999999999999999    8999999999999999999988654 444455   4579999999999999999


Q ss_pred             hhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          173 DLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       173 DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      |||+|||+|||+.| |..||.+-.       ..+   ++.++..-                                   
T Consensus       448 DVWAFGVLLWEIATYGMsPYPGid-------lSq---VY~LLEkg-----------------------------------  482 (1157)
T KOG4278|consen  448 DVWAFGVLLWEIATYGMSPYPGID-------LSQ---VYGLLEKG-----------------------------------  482 (1157)
T ss_pred             hhHHHHHHHHHHHhcCCCCCCCcc-------HHH---HHHHHhcc-----------------------------------
Confidence            99999999999987 888987543       111   11111100                                   


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        -..+-+..+++.+.+|++.||+|.|.+||++.|+-+
T Consensus       483 --yRM~~PeGCPpkVYeLMraCW~WsPsDRPsFaeiHq  518 (1157)
T KOG4278|consen  483 --YRMDGPEGCPPKVYELMRACWNWSPSDRPSFAEIHQ  518 (1157)
T ss_pred             --ccccCCCCCCHHHHHHHHHHhcCCcccCccHHHHHH
Confidence              012446778899999999999999999999988743

>KOG0200 consensus Fibroblast/platelet-derived growth factor receptor and related receptor tyrosine kinases [Signal transduction mechanisms]

Probab=99.92  E-value=2.8e-25  Score=218.84  Aligned_cols=220  Identities=16%  Similarity=0.238  Sum_probs=175.0

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--------
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--------   93 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--------   93 (358)
                      ...||+|.+.....+.+++.+..+.+..... ..|.+++.+...... .+.+++|+|||..|+|.+++....        
T Consensus       328 ~~~VaVK~~k~~~~~~~~~~~~~El~~m~~~-g~H~niv~llG~~t~-~~~~~~v~Ey~~~G~L~~~Lr~~r~~~~~~~~  405 (609)
T KOG0200|consen  328 YVTVAVKMLKENASSSEKKDLMSELNVLKEL-GKHPNIVNLLGACTQ-DGPLYVIVEYAEHGDLLEFLRKKRVTESIDGS  405 (609)
T ss_pred             eEEEEEEecccccCcHHHHHHHHHHHHHHHh-cCCcchhhheeeecc-CCceEEEEEeccCCcHHHHHHhcccccccccc
Confidence            4478999999999999999999999888775 467777777776665 788999999999999999988654        


Q ss_pred             --------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-CC---CCcc--CC
Q 045353           94 --------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-FT---NDIQ--TR  155 (358)
Q Consensus        94 --------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-~~---~~~g--t~  155 (358)
                              .+.......+..|++.|+.|+.+.+++||    .|||+..+..+||+|||+|+..... ..   ...|  ..
T Consensus       406 ~~~~~~~~~L~~~dLlsfa~QIa~GMe~L~~~~~vHRDLAaRNVLi~~~~~~kIaDFGlar~~~~~~~y~~~~~~~~LP~  485 (609)
T KOG0200|consen  406 GVFPNERDALTTKDLLSFAYQIANGMEYLASVPCVHRDLAARNVLITKNKVIKIADFGLARDHYNKDYYRTKSSAGTLPV  485 (609)
T ss_pred             CCCccccCCcCHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhEEecCCCEEEEccccceeccCCCCceEecCCCCccce
Confidence                    36677889999999999999999999999    8999999999999999999854322 11   1222  23


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      .|||||.+....|+.++||||+||+|||+++ |..||.+...     ..+.+..+..  |                    
T Consensus       486 kWmApEsl~~~~ft~kSDVWSfGI~L~EifsLG~~PYp~~~~-----~~~l~~~l~~--G--------------------  538 (609)
T KOG0200|consen  486 KWMAPESLFDRVFTSKSDVWSFGILLWEIFTLGGTPYPGIPP-----TEELLEFLKE--G--------------------  538 (609)
T ss_pred             eecCHHHhccCcccccchhhHHHHHHHHHhhCCCCCCCCCCc-----HHHHHHHHhc--C--------------------
Confidence            5999999999889999999999999999998 7788864210     1111111100  0                    


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                         .....|..++.++.++++.||..+|++||++.++..
T Consensus       539 -------------------~r~~~P~~c~~eiY~iM~~CW~~~p~~RP~F~~~~~  574 (609)
T KOG0200|consen  539 -------------------NRMEQPEHCSDEIYDLMKSCWNADPEDRPTFSECVE  574 (609)
T ss_pred             -------------------CCCCCCCCCCHHHHHHHHHHhCCCcccCCCHHHHHH
Confidence                               012445667889999999999999999999998753

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=99.92  E-value=1.9e-25  Score=208.70  Aligned_cols=196  Identities=20%  Similarity=0.222  Sum_probs=151.2

Q ss_pred             CCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC
Q 045353           56 TEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV  131 (358)
Q Consensus        56 ~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~  131 (358)
                      |++|+......- ....+||+||||.||+|++.-.-.+.+.+.|++...+..+.|+.|+|..|-+||    .|||+++.|
T Consensus        71 h~nivay~gsyl-r~dklwicMEycgggslQdiy~~TgplselqiayvcRetl~gl~ylhs~gk~hRdiKGanilltd~g  149 (829)
T KOG0576|consen   71 HPNIVAYFGSYL-RRDKLWICMEYCGGGSLQDIYHVTGPLSELQIAYVCRETLQGLKYLHSQGKIHRDIKGANILLTDEG  149 (829)
T ss_pred             CcChHHHHhhhh-hhcCcEEEEEecCCCcccceeeecccchhHHHHHHHhhhhccchhhhcCCcccccccccceeecccC
Confidence            334444333332 246799999999999999988888899999999999999999999999999999    899999999


Q ss_pred             cEEEEecCCceecCC---CCCCCccCCCcchhHHHh---CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHH
Q 045353          132 QCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLL---GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDH  205 (358)
Q Consensus       132 ~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~---~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~  205 (358)
                      .+|++|||.+.....   .....+||++|||||+..   .+.|...+|||++|+...|+-.-++|...       ....+
T Consensus       150 DvklaDfgvsaqitati~KrksfiGtpywmapEvaaverkggynqlcdiwa~gitAiel~eLqpplfd-------lhpmr  222 (829)
T KOG0576|consen  150 DVKLADFGVSAQITATIAKRKSFIGTPYWMAPEVAAVERKGGYNQLCDIWALGITAIELGELQPPLFD-------LHPMR  222 (829)
T ss_pred             ceeecccCchhhhhhhhhhhhcccCCccccchhHHHHHhcccccccccccccccchhhhhhcCCcccc-------cchHH
Confidence            999999999865543   245679999999999875   34699999999999999999887766421       11122


Q ss_pred             HHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH
Q 045353          206 LALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA  285 (358)
Q Consensus       206 l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~  285 (358)
                      ...++..-+.-|+...                                    -+..-++.|.+|++.+|..+|++|||++
T Consensus       223 ~l~LmTkS~~qpp~lk------------------------------------Dk~kws~~fh~fvK~altknpKkRptae  266 (829)
T KOG0576|consen  223 ALFLMTKSGFQPPTLK------------------------------------DKTKWSEFFHNFVKGALTKNPKKRPTAE  266 (829)
T ss_pred             HHHHhhccCCCCCccc------------------------------------CCccchHHHHHHHHHHhcCCCccCCChh
Confidence            2222322232222111                                    1112267889999999999999999999


Q ss_pred             HHhcCcCcCC
Q 045353          286 QCLSHPWMSA  295 (358)
Q Consensus       286 elL~hpwf~~  295 (358)
                      .+|+|||...
T Consensus       267 klL~h~fvs~  276 (829)
T KOG0576|consen  267 KLLQHPFVSQ  276 (829)
T ss_pred             hheeceeecc
Confidence            9999999974

>PHA02882 putative serine/threonine kinase; Provisional

Probab=99.92  E-value=2.5e-25  Score=201.62  Aligned_cols=174  Identities=13%  Similarity=0.087  Sum_probs=127.5

Q ss_pred             CcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---
Q 045353           74 FSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---  146 (358)
Q Consensus        74 ~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---  146 (358)
                      +++||++.. ++.+.+.......+..+..++.+++.++.++|+.+++||    +|||++.++.++|+|||+|+....   
T Consensus       103 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~iiHrDiKp~Nill~~~~~~~l~DFGla~~~~~~~~  181 (294)
T PHA02882        103 FILLEKLVE-NTKEIFKRIKCKNKKLIKNIMKDMLTTLEYIHEHGISHGDIKPENIMVDGNNRGYIIDYGIASHFIIHGK  181 (294)
T ss_pred             EEEEehhcc-CHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCcEEEEEcCCceeeccCCc
Confidence            577777644 444444433345677788999999999999999999999    899999999999999999965421   


Q ss_pred             -------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHH-HHHhCCCch
Q 045353          147 -------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALM-MELLGMMPR  218 (358)
Q Consensus       147 -------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i-~~~~g~~p~  218 (358)
                             ......||+.|+|||++.+..++.++||||+||++|+|++|..||.+.+...     ...... .+....+. 
T Consensus       182 ~~~~~~~~~~~~~gt~~y~ape~~~~~~~~~~~DiwSlG~~l~el~~g~~P~~~~~~~~-----~~~~~~~~~~~~~~~-  255 (294)
T PHA02882        182 HIEYSKEQKDLHRGTLYYAGLDAHNGACVTRRGDLESLGYCMLKWAGIKLPWKGFGHNG-----NLIHAAKCDFIKRLH-  255 (294)
T ss_pred             ccccccccccccCCCccccCHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCccccch-----HHHHHhHHHHHHHhh-
Confidence                   1123479999999999999999999999999999999999999997653211     111000 00000000 


Q ss_pred             hhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          219 KIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                        .... .....++.+.+++..|+..+|++||+.+++++
T Consensus       256 ----------------------------------~~~~-~~~~~~~~~~~~~~~~~~~~~~~rp~~~~l~~  291 (294)
T PHA02882        256 ----------------------------------EGKI-KIKNANKFIYDFIECVTKLSYEEKPDYDALIK  291 (294)
T ss_pred             ----------------------------------hhhh-ccCCCCHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                                              0000 11223577899999999999999999999875

>KOG1167 consensus Serine/threonine protein kinase of the CDC7 subfamily involved in DNA synthesis, repair and recombination [Replication, recombination and repair]

Probab=99.90  E-value=5.5e-24  Score=189.79  Aligned_cols=258  Identities=19%  Similarity=0.206  Sum_probs=169.6

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhH
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDN  102 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~  102 (358)
                      .-||+|-.....+.+   ++..+..-...+- +..+++-+. ......+...|||||.+.-+..++...   ++..++..
T Consensus        65 ~~valk~i~~ts~p~---ri~~El~~L~~~g-G~~ni~~~~-~~~rnnd~v~ivlp~~~H~~f~~l~~~---l~~~~i~~  136 (418)
T KOG1167|consen   65 RYVALKAIYRTSSPS---RILNELEMLYRLG-GSDNIIKLN-GCFRNNDQVAIVLPYFEHDRFRDLYRS---LSLAEIRW  136 (418)
T ss_pred             ceEeeeecccccCch---HHHHHHHHHHHhc-cchhhhcch-hhhccCCeeEEEecccCccCHHHHHhc---CCHHHHHH
Confidence            345556555544433   3444444443321 222333322 223334567889999999998888766   56789999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecC-----------------C--------------
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTH-----------------K--------------  146 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~-----------------~--------------  146 (358)
                      +++.++.++.++|..||+||    .|+|.+.. +.-.|+|||+|...+                 .              
T Consensus       137 Yl~~ll~Al~~~h~~GIvHRDiKpsNFL~n~~t~rg~LvDFgLA~~~d~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~  216 (418)
T KOG1167|consen  137 YLRNLLKALAHLHKNGIVHRDIKPSNFLYNRRTQRGVLVDFGLAQRYDGYQQTEHSRSYSGRHATPAMGKDVHCQSVATA  216 (418)
T ss_pred             HHHHHHHHhhhhhccCccccCCCccccccccccCCceEEechhHHHHHhhhhhhhhhhhhcccCCccccCcccccccccc
Confidence            99999999999999999999    89999865 567999999995200                 0              


Q ss_pred             --C--------------CCCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHH
Q 045353          147 --Q--------------FTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALM  209 (358)
Q Consensus       147 --~--------------~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i  209 (358)
                        .              .....||++|+|||+++..+ .++++||||.|||+..+++++.||.....     +.+.+..+
T Consensus       217 ~~p~g~~~~~~~~r~~~~anrAGT~GfRaPEvL~k~~~QttaiDiws~GVI~Lslls~~~PFf~a~d-----d~~al~ei  291 (418)
T KOG1167|consen  217 SKPAGYYRRCNDGRPSERANRAGTPGFRAPEVLFRCPRQTTAIDIWSAGVILLSLLSRRYPFFKAKD-----DADALAEI  291 (418)
T ss_pred             cCCCCceeccCCCccceecccCCCCCCCchHHHhhccCcCCccceeeccceeehhhccccccccCcc-----ccchHHHH
Confidence              0              01237999999999999876 68999999999999999999999865442     56778888


Q ss_pred             HHHhCCCchhh--hcCCCCChhhhhc-----cCC-chhhhhcc---CCcchhhHHhhhcCChhhHHHHHHHHHhccccCC
Q 045353          210 MELLGMMPRKI--ALGGRYSRDFFNR-----HGD-LRHIRRLR---FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVP  278 (358)
Q Consensus       210 ~~~~g~~p~~~--~~~~~~~~~~~~~-----~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP  278 (358)
                      ..++|...-.-  ...+.  ...|..     ... ...+....   ..+............+..+..+.+|+.+||+.||
T Consensus       292 ~tifG~~~mrk~A~l~g~--~~l~~ksn~~~~~e~~~~f~s~~~~~~~~~~q~n~~~~~~~d~~~~~~~dlLdk~le~np  369 (418)
T KOG1167|consen  292 ATIFGSAEMRKCAALPGR--ILLWQKSNIPTIPELRVNFETLHIESIYKSRQPNTEREIGSDVFPALLLDLLDKCLELNP  369 (418)
T ss_pred             HHHhChHHHHHHhhcCCc--eeeeccccccccHHHHhchhccChhhcccccccceeeccccccccHHHHHHHHHHccCCh
Confidence            88888633211  11111  001110     000 00000000   0000000011122334456688999999999999


Q ss_pred             CCCCCHHHHhcCcCcCC
Q 045353          279 EKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       279 ~~R~ta~elL~hpwf~~  295 (358)
                      .+|+||+++|+||||..
T Consensus       370 ~kRitAEeALkHpFF~~  386 (418)
T KOG1167|consen  370 QKRITAEDALKHPFFDE  386 (418)
T ss_pred             hhcccHHHHhcCcCCcc
Confidence            99999999999999994

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.90  E-value=7.5e-24  Score=221.40  Aligned_cols=228  Identities=12%  Similarity=0.086  Sum_probs=156.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..||+|.+........     ++.+...+  ..|++++........ ....|+||||++||+|.+++..   +.+.+
T Consensus       713 ~~~~~vavK~~~~~~~~~~-----~~~~~l~~--l~HpnIv~~~~~~~~-~~~~~lv~Ey~~~g~L~~~l~~---l~~~~  781 (968)
T PLN00113        713 KNGMQFVVKEINDVNSIPS-----SEIADMGK--LQHPNIVKLIGLCRS-EKGAYLIHEYIEGKNLSEVLRN---LSWER  781 (968)
T ss_pred             CCCcEEEEEEccCCccccH-----HHHHHHhh--CCCCCcceEEEEEEc-CCCCEEEEeCCCCCcHHHHHhc---CCHHH
Confidence            4677889998764322111     12233333  478888888776644 3568999999999999999864   67788


Q ss_pred             hhHHHHhhhhcccccc---CCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHR---RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h---~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.|+.|+|   +.+++||    +|||++.++..+++ ||.+..... .....||+.|+|||++.+..|+.++
T Consensus       782 ~~~i~~~ia~~L~yLH~~~~~~iiH~dlkp~Nil~~~~~~~~~~-~~~~~~~~~-~~~~~~t~~y~aPE~~~~~~~~~~s  859 (968)
T PLN00113        782 RRKIAIGIAKALRFLHCRCSPAVVVGNLSPEKIIIDGKDEPHLR-LSLPGLLCT-DTKCFISSAYVAPETRETKDITEKS  859 (968)
T ss_pred             HHHHHHHHHHHHHHhccCCCCCeecCCCCHHhEEECCCCceEEE-ecccccccc-CCCccccccccCcccccCCCCCccc
Confidence            8999999999999999   6789998    89999999888876 666544322 2334789999999999998899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|||++|+.||....+...  .......  .......                   .....       ....
T Consensus       860 Dv~S~Gvvl~el~tg~~p~~~~~~~~~--~~~~~~~--~~~~~~~-------------------~~~~~-------~~~~  909 (968)
T PLN00113        860 DIYGFGLILIELLTGKSPADAEFGVHG--SIVEWAR--YCYSDCH-------------------LDMWI-------DPSI  909 (968)
T ss_pred             chhhHHHHHHHHHhCCCCCCcccCCCC--cHHHHHH--HhcCccc-------------------hhhee-------Cccc
Confidence            999999999999999999954322110  1110000  0000000                   00000       0000


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                      ............++.+++.+||+.||++|||+.|+++.
T Consensus       910 ~~~~~~~~~~~~~~~~l~~~Cl~~~P~~RPt~~evl~~  947 (968)
T PLN00113        910 RGDVSVNQNEIVEVMNLALHCTATDPTARPCANDVLKT  947 (968)
T ss_pred             cCCCCccHHHHHHHHHHHHhhCcCCchhCcCHHHHHHH
Confidence            00111223345578899999999999999999999875

>KOG1025 consensus Epidermal growth factor receptor EGFR and related tyrosine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=1.1e-23  Score=200.75  Aligned_cols=217  Identities=17%  Similarity=0.125  Sum_probs=177.6

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      .++||||++...-+......+..++-+.+.  +.|++++++......+.  +-||++|+++|.|.|+...+ ..+.....
T Consensus       725 KipVaiKvl~~~t~~~~s~e~LdeAl~mas--ldHpnl~RLLgvc~~s~--~qlvtq~mP~G~LlDyvr~hr~~igsq~l  800 (1177)
T KOG1025|consen  725 KIPVAIKVLIEFTSPKASIELLDEALRMAS--LDHPNLLRLLGVCMLST--LQLVTQLMPLGCLLDYVREHRDNIGSQDL  800 (1177)
T ss_pred             cceeEEEEeeccCCchhhHHHHHHHHHHhc--CCCchHHHHhhhcccch--HHHHHHhcccchHHHHHHHhhccccHHHH
Confidence            358999999999999999999999888887  68899999988877655  88999999999999988753 45666788


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCcc--CCCcchhHHHhCCCCCcc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQ--TRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~g--t~~Y~aPE~l~~~~~~~~  171 (358)
                      .++..||++|+.|+|++..+||    .|||+....++||+|||+|+.....   +....|  .+.|||=|.+....|+++
T Consensus       801 Lnw~~QIAkgM~YLe~qrlVHrdLaaRNVLVksP~hvkitdfgla~ll~~d~~ey~~~~gK~pikwmale~i~~~~~thq  880 (1177)
T KOG1025|consen  801 LNWCYQIAKGMKYLEEQRLVHRDLAARNVLVKSPNHVKITDFGLAKLLAPDEKEYSAPGGKVPIKWMALESIRIRKYTHQ  880 (1177)
T ss_pred             HHHHHHHHHHHHHHHhcchhhhhhhhhheeecCCCeEEEEecchhhccCcccccccccccccCcHHHHHHHhhccCCCch
Confidence            9999999999999999999999    8999999999999999999876533   222233  457999999999999999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++||++| |..|+.+....          .|-+++..                                   
T Consensus       881 SDVWsfGVtiWElmTFGa~Py~gi~~~----------eI~dlle~-----------------------------------  915 (1177)
T KOG1025|consen  881 SDVWSFGVTIWELMTFGAKPYDGIPAE----------EIPDLLEK-----------------------------------  915 (1177)
T ss_pred             hhhhhhhhhHHHHHhcCCCccCCCCHH----------HhhHHHhc-----------------------------------
Confidence            999999999999988 88888755421          11111100                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        -.....|+.++.++.-++.+||..|+..||+++++..
T Consensus       916 --geRLsqPpiCtiDVy~~mvkCwmid~~~rp~fkel~~  952 (1177)
T KOG1025|consen  916 --GERLSQPPICTIDVYMVMVKCWMIDADSRPTFKELAE  952 (1177)
T ss_pred             --cccCCCCCCccHHHHHHHHHHhccCcccCccHHHHHH
Confidence              0123567778889999999999999999999998753

>KOG3653 consensus Transforming growth factor beta/activin receptor subfamily of serine/threonine kinases [Signal transduction mechanisms]

Probab=99.89  E-value=2.6e-23  Score=187.69  Aligned_cols=167  Identities=19%  Similarity=0.226  Sum_probs=126.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC---CCCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ++.-||+|..    ...++..+.-++..=.-....|.+|++....++..   ..+.|+|+||.+.|||.+++.... .++
T Consensus       232 ~~~~VAVKif----p~~~kqs~~~Ek~Iy~lp~m~h~nIl~Fi~~ekr~t~~~~eywLVt~fh~kGsL~dyL~~nt-isw  306 (534)
T KOG3653|consen  232 DNRLVAVKIF----PEQEKQSFQNEKNIYSLPGMKHENILQFIGAEKRGTADRMEYWLVTEFHPKGSLCDYLKANT-ISW  306 (534)
T ss_pred             cCceeEEEec----CHHHHHHHHhHHHHHhccCccchhHHHhhchhccCCccccceeEEeeeccCCcHHHHHHhcc-ccH
Confidence            4467888875    45556666655554443345667777666655543   468899999999999999997655 556


Q ss_pred             hhhhHHHHhhhhccccccC---------CCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcch
Q 045353           98 SSRDNEVKNTSQGVKGHRR---------PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRC  159 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~---------~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~a  159 (358)
                      .....+...+.+|+.|+|+         ..|+||    .||||.+|+.+-|+|||+|.....     .....+||..|||
T Consensus       307 ~~~cria~SmarGLa~LHee~p~~d~~Kp~IaHRDlkSkNVLvK~DlTccIaDFGLAl~~~p~~~~~d~~~qVGT~RYMA  386 (534)
T KOG3653|consen  307 NSLCRIAESMARGLAHLHEELPRGDHHKPPIAHRDLKSKNVLVKNDLTCCIADFGLALRLEPGKPQGDTHGQVGTRRYMA  386 (534)
T ss_pred             HHHHHHHHHHHHHHHHhcccCCcCCCCCCccccccccccceEEccCCcEEeeccceeEEecCCCCCcchhhhhhhhhhcC
Confidence            6667777777777777774         577899    899999999999999999966542     2344699999999


Q ss_pred             hHHHhCCC-CC-----cchhhhhhhHHHHhhhcCCcccC
Q 045353          160 PEVLLGSK-YS-----TSADLWSFACICFELATGDVLFD  192 (358)
Q Consensus       160 PE~l~~~~-~~-----~~~DiwSlGvil~ell~g~~pf~  192 (358)
                      ||+|.|.- +.     .++||||+|.|||||++.-..++
T Consensus       387 PEvLEgainl~d~~Afkr~DvYamgLVLWEi~SRC~~~~  425 (534)
T KOG3653|consen  387 PEVLEGAINLQDRDAFKRIDVYAMGLVLWEIASRCTDAD  425 (534)
T ss_pred             HHHHhhhcccccHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            99999853 32     45899999999999998765554

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=2.6e-24  Score=209.61  Aligned_cols=181  Identities=19%  Similarity=0.211  Sum_probs=144.9

Q ss_pred             ccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----
Q 045353           76 VDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----  147 (358)
Q Consensus        76 v~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----  147 (358)
                      +||||++ +|+.++.....+...++..+++|++.|+.|+|+.|+.||    +|+|+..+|.+||+|||.+......    
T Consensus       399 ~mE~~~~-Dlf~~~~~~~~~~~~e~~c~fKqL~~Gv~y~h~~GiahrdlK~enll~~~~g~lki~Dfg~~~vf~~~~e~~  477 (601)
T KOG0590|consen  399 SMEYCPY-DLFSLVMSNGKLTPLEADCFFKQLLRGVKYLHSMGLAHRDLKLENLLVTENGILKIIDFGAASVFRYPWEKN  477 (601)
T ss_pred             hhhcccH-HHHHHHhcccccchhhhhHHHHHHHHHHHHHHhcCceeccCccccEEEecCCceEEeecCcceeeccCcchh
Confidence            4999999 999999988888899999999999999999999999999    9999999999999999999654322    


Q ss_pred             ---CCCCccCCCcchhHHHhCCCCCcc-hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcC
Q 045353          148 ---FTNDIQTRQYRCPEVLLGSKYSTS-ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG  223 (358)
Q Consensus       148 ---~~~~~gt~~Y~aPE~l~~~~~~~~-~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  223 (358)
                         ....+|+..|+|||++.+..|++. +||||.|++++.|++|+.||.........     .                 
T Consensus       478 ~~~~~g~~gS~pY~apE~~~~~~ydpr~vDiwS~~ii~~~m~~~~~~Wk~a~~~~~~-----~-----------------  535 (601)
T KOG0590|consen  478 IHESSGIVGSDPYLAPEVLTGKEYDPRAVDVWSCGIIYICMILGRFPWKVAKKSDNS-----F-----------------  535 (601)
T ss_pred             hhhhcCcccCCcCcCcccccccccCcchhhhhhccceEEEEecCCCccccccccccc-----h-----------------
Confidence               345689999999999999999655 89999999999999999999644322110     0                 


Q ss_pred             CCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          224 GRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            +           ........+...+.......++...+.+|.+||++||.+|+|+++|++.+||+..
T Consensus       536 ------~-----------~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~l~~~P~~R~ti~~i~~d~W~~~i  591 (601)
T KOG0590|consen  536 ------K-----------TNNYSDQRNIFEGPNRLLSLLPRETRIIIYRMLQLDPTKRITIEQILNDEWIRSI  591 (601)
T ss_pred             ------h-----------hhccccccccccChHHHHHhchhhHHHHHHHHccCChhheecHHHHhhChHhhhc
Confidence                  0           0000001112222333444557788999999999999999999999999999974

>KOG0984 consensus Mitogen-activated protein kinase (MAPK) kinase MKK3/MKK6 [Signal transduction mechanisms]

Probab=99.88  E-value=1.4e-23  Score=170.69  Aligned_cols=184  Identities=16%  Similarity=0.165  Sum_probs=136.7

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccc----cccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEER----QNDSVV   94 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~----~~~~~~   94 (358)
                      ..+|...|+|.....+..+..++..++...... +..-+..|..+. .-..+++.||+||.|.- ||..+    +.....
T Consensus        68 ~~sg~imAvKri~~tvn~q~q~r~L~dldi~~r-~~~CPf~V~FyG-a~~regdvwIcME~M~t-Sldkfy~~v~~~g~~  144 (282)
T KOG0984|consen   68 IQSGTIMAVKRIRATVNSQEQKRLLMDLDIIMR-TVDCPFTVHFYG-ALFREGDVWICMELMDT-SLDKFYRKVLKKGGT  144 (282)
T ss_pred             ccCCeEEEEeeehhhcChHHHHHHHHhhhhhcc-CCCCCeEEEeeh-hhhccccEEEeHHHhhh-hHHHHHHHHHhcCCc
Confidence            456777789988888776666666555544332 233445555555 33357899999999874 44433    334556


Q ss_pred             cChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCCCC--CCCccCCCcchhHHHhCC-
Q 045353           95 NNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGS-  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~--~~~~gt~~Y~aPE~l~~~-  166 (358)
                      ..+..+-.+.-.+..++.++|+ ..+|||    .|||++.+|++||||||+|-......  +-..|...|||||.+... 
T Consensus       145 ipE~vlGkIa~Svv~al~~L~~kL~vIHRDvKPsNiLIn~~GqVKiCDFGIsG~L~dSiAkt~daGCkpYmaPEri~~e~  224 (282)
T KOG0984|consen  145 IPEDVLGKIAVSVVHALEFLHSKLSVIHRDVKPSNILINYDGQVKICDFGISGYLVDSIAKTMDAGCKPYMAPERINPEL  224 (282)
T ss_pred             CchHHhhHhHHHHHHHHHHHHHHhhhhhccCCcceEEEccCCcEEEcccccceeehhhhHHHHhcCCCccCChhhcCccc
Confidence            7777788888888888888886 577777    89999999999999999997765442  235788999999998753 


Q ss_pred             ---CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHH
Q 045353          167 ---KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMM  210 (358)
Q Consensus       167 ---~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~  210 (358)
                         .|+.++||||||++++||.++++||..+.     ...+++.++.
T Consensus       225 n~~gY~vksDvWSLGItmiElA~lr~PY~~w~-----tpF~qLkqvV  266 (282)
T KOG0984|consen  225 NQKGYSVKSDVWSLGITMIEMAILRFPYESWG-----TPFQQLKQVV  266 (282)
T ss_pred             CcccceeehhhhhhhhhhhhhhhccccccccC-----CHHHHHHHHh
Confidence               59999999999999999999999997554     3566666554

>KOG2052 consensus Activin A type IB receptor, serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.88  E-value=6.9e-23  Score=183.72  Aligned_cols=161  Identities=18%  Similarity=0.193  Sum_probs=126.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC---CCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS---KPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .|..||+|+    |+........|++..=+..++-|.+|...-..+   ...-..+|+|++|.+.|||+|++.. ...+.
T Consensus       233 rGe~VAVKi----F~srdE~SWfrEtEIYqTvmLRHENILgFIaaD~~~~gs~TQLwLvTdYHe~GSL~DyL~r-~tv~~  307 (513)
T KOG2052|consen  233 RGEDVAVKI----FSSRDERSWFRETEIYQTVMLRHENILGFIAADNKDNGSWTQLWLVTDYHEHGSLYDYLNR-NTVTT  307 (513)
T ss_pred             cCCceEEEE----ecccchhhhhhHHHHHHHHHhccchhhhhhhccccCCCceEEEEEeeecccCCcHHHHHhh-ccCCH
Confidence            466788886    455666777888888877777787665554443   4455889999999999999999987 44566


Q ss_pred             hhhhHHHHhhhhccccccC--------CCCCCc----ccccccCCCcEEEEecCCceecCC-------CCCCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRR--------PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------QFTNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~--------~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------~~~~~~gt~~Y~  158 (358)
                      .....+...++.|+.++|-        +.|.||    .|||+..++.+-|+|||+|.....       ..+..+||..||
T Consensus       308 ~~ml~LalS~AsGLaHLH~eI~GTqgKPaIAHRDlKSKNILVKkn~~C~IADLGLAv~h~~~t~~idi~~N~rVGTKRYM  387 (513)
T KOG2052|consen  308 EGMLKLALSIASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSDTDTIDIPPNPRVGTKRYM  387 (513)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhcCCCCchhhccccccccEEEccCCcEEEeeceeeEEecccCCcccCCCCCccceeecc
Confidence            6667777788888888883        567799    899999999999999999965432       356679999999


Q ss_pred             hhHHHhCCC----C--CcchhhhhhhHHHHhhhc
Q 045353          159 CPEVLLGSK----Y--STSADLWSFACICFELAT  186 (358)
Q Consensus       159 aPE~l~~~~----~--~~~~DiwSlGvil~ell~  186 (358)
                      |||+|...-    +  -..+||||||.|+||++.
T Consensus       388 APEvLdetin~~~Fesyk~ADIYafgLVlWEiar  421 (513)
T KOG2052|consen  388 APEVLDETINMKHFESYKRADIYAFGLVLWEIAR  421 (513)
T ss_pred             ChHHhhhhcChhhhhhhhHHHHHHHHHHHHHHHH
Confidence            999997631    2  245899999999999874

>KOG0603 consensus Ribosomal protein S6 kinase [Signal transduction mechanisms]

Probab=99.83  E-value=8.6e-22  Score=184.30  Aligned_cols=220  Identities=19%  Similarity=0.219  Sum_probs=171.0

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      .|-.-|.|++...-..+..+-.++-.....+.+..++.++....... .++.++++++|..||+|+..+.....+.+...
T Consensus        21 a~~~yamkvl~k~t~~~~~~~~t~~er~il~~~~~~~f~v~lhyafq-t~~kl~l~ld~~rgg~lft~l~~~~~f~~~~~   99 (612)
T KOG0603|consen   21 AGHLYAMKVLKKATLKVRDRTHTKQERIILAFVHNTPFLVKLHYAFQ-TDGKLYLILDFLRGGDLFTRLSKEVMFDELDV   99 (612)
T ss_pred             ccchhhhhcccccccccccccccccHHHHHhhccCCCceeeeeeeec-cccchhHhhhhcccchhhhccccCCchHHHHH
Confidence            34445667776644433333322222222333445667777766555 46789999999999999999999999999999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWS  176 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwS  176 (358)
                      +.++..++-++.++|..++++|    +||+++.+|++++.|||+++..-..... |||..|||||++.  +...++|.||
T Consensus       100 ~~~~aelaLald~lh~l~iiyrd~k~enilld~~Ghi~~tdfglske~v~~~~~-cgt~eymApEI~~--gh~~a~D~ws  176 (612)
T KOG0603|consen  100 AFYLAELALALDHLHKLGIAYRDYKLENVLLLLEGHIKLTDFGLSKEAVKEKIA-CGTYEYRAPEIIN--GHLSAADWWS  176 (612)
T ss_pred             HHHHHHHHHHHhhcchhHHHHhcccccceeecccCccccCCchhhhHhHhhhhc-ccchhhhhhHhhh--ccCCcccchh
Confidence            9999999999999999999987    9999999999999999999764332222 9999999999998  5678999999


Q ss_pred             hhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhh
Q 045353          177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY  256 (358)
Q Consensus       177 lGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (358)
                      +|+++|+|++|..||.+          +....|                                          .....
T Consensus       177 ~gvl~felltg~~pf~~----------~~~~~I------------------------------------------l~~~~  204 (612)
T KOG0603|consen  177 FGVLAFELLTGTLPFGG----------DTMKRI------------------------------------------LKAEL  204 (612)
T ss_pred             hhhhHHHHhhCCCCCch----------HHHHHH------------------------------------------hhhcc
Confidence            99999999999999953          222222                                          22244


Q ss_pred             cCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          257 DFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       257 ~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                      .+|...+..+.+++..++..+|..|.-     +.|+++|+||+.-
T Consensus       205 ~~p~~l~~~a~~~~~~l~~r~p~nrLg~~~~~~~eik~h~f~~~i  249 (612)
T KOG0603|consen  205 EMPRELSAEARSLFRQLFKRNPENRLGAGPDGVDEIKQHEFFQSI  249 (612)
T ss_pred             CCchhhhHHHHHHHHHHHhhCHHHHhccCcchhHHHhccchheee
Confidence            566777889999999999999999985     5799999999863

>cd00180 PKc Catalytic domain of Protein Kinases

Probab=99.83  E-value=2e-20  Score=159.63  Aligned_cols=189  Identities=21%  Similarity=0.276  Sum_probs=153.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      +|..+++|.............+.++.+.....  .+..+.......... ...+++|||+.|++|.+++... ...+...
T Consensus        17 ~~~~~~~K~~~~~~~~~~~~~~~~e~~~~~~l--~~~~i~~~~~~~~~~-~~~~~~~e~~~~~~l~~~~~~~~~~~~~~~   93 (215)
T cd00180          17 TGKKVAIKIIKKEDSSSLLEELLREIEILKKL--NHPNIVKLYGVFEDE-NHLYLVMEYCEGGSLKDLLKENEGKLSEDE   93 (215)
T ss_pred             CCcEEEEEEeccccchhHHHHHHHHHHHHHhc--CCCCeeeEeeeeecC-CeEEEEEecCCCCcHHHHHHhccCCCCHHH
Confidence            36678888888776654556666666655553  335555554444432 6789999999999999998765 4577888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC-CCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      +..++.+++.++.++|..+++|.    .||+++. ++.++|+|||.+......   .....+...|++||.+... .++.
T Consensus        94 ~~~~~~~l~~~l~~lh~~~~~H~dl~~~ni~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~  173 (215)
T cd00180          94 ILRILLQILEGLEYLHSNGIIHRDLKPENILLDSDNGKVKLADFGLSKLLTSDKSLLKTIVGTPAYMAPEVLLGKGYYSE  173 (215)
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCCHhhEEEeCCCCcEEEecCCceEEccCCcchhhcccCCCCccChhHhcccCCCCc
Confidence            99999999999999999999988    9999999 899999999999776544   3445678899999999887 7889


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +.|+|++|++++++                                                                  
T Consensus       174 ~~D~~~lg~~~~~l------------------------------------------------------------------  187 (215)
T cd00180         174 KSDIWSLGVILYEL------------------------------------------------------------------  187 (215)
T ss_pred             hhhhHHHHHHHHHH------------------------------------------------------------------
Confidence            99999999999998                                                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                                   ..+.+++.+||..||++|||+.++++|+
T Consensus       188 -------------~~~~~~l~~~l~~~p~~R~~~~~l~~~~  215 (215)
T cd00180         188 -------------PELKDLIRKMLQKDPEKRPSAKEILEHL  215 (215)
T ss_pred             -------------HHHHHHHHHHhhCCcccCcCHHHHhhCC
Confidence                         1356899999999999999999999875

Protein Kinases (PKs), catalytic (c) domain. PKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine or tyrosine residues on protein substrates. The PK family is part of a larger superfamily that includes the catalytic domains of RIO kinases, aminoglycoside phosphotransferase, choline kinase, phosphoinositide 3-kinase (PI3K), and actin-fragmin kinase. PKs make up a large family of serine/threonine kinases, protein tyrosine kinases (PTKs), and dual-specificity PKs that phosphorylate both serine/threonine and tyrosine residues of target proteins. Majority of protein phosphorylation, about 95%, occurs on serine residues while only 1% occurs on tyrosine residues. Protein phosphorylation is a mechanism by which a wide variety of cellular proteins, such as enzymes and membrane channels, are reversibly regulated in response to certain stimuli. PKs often function as components of signal transduction pathways in which

>KOG1345 consensus Serine/threonine kinase [Signal transduction mechanisms]

Probab=99.83  E-value=2.3e-21  Score=163.95  Aligned_cols=213  Identities=15%  Similarity=0.067  Sum_probs=149.8

Q ss_pred             HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCC
Q 045353           40 KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSR  119 (358)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~  119 (358)
                      +.+.|+--=.--+ ..|.+|+..+++.....+....+|||++-|+|..-+...+ ..+.-...+..|+++++.|+|+.++
T Consensus        65 ~dF~rEfhY~~~L-s~H~hIi~tY~vaFqt~d~YvF~qE~aP~gdL~snv~~~G-igE~~~K~v~~ql~SAi~fMHsknl  142 (378)
T KOG1345|consen   65 ADFVREFHYSFFL-SPHQHIIDTYEVAFQTSDAYVFVQEFAPRGDLRSNVEAAG-IGEANTKKVFAQLLSAIEFMHSKNL  142 (378)
T ss_pred             HHHHHHhccceee-ccchhhhHHHHHHhhcCceEEEeeccCccchhhhhcCccc-ccHHHHHHHHHHHHHHHHHhhccch
Confidence            4454543322222 3555888888887766667778999999999999887755 4566778899999999999999999


Q ss_pred             CCc----cccccc--CCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCC---C--CCcchhhhhhhHHHHhhhcCC
Q 045353          120 ATR----KNLLAA--VDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS---K--YSTSADLWSFACICFELATGD  188 (358)
Q Consensus       120 ~hr----~NILl~--~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~---~--~~~~~DiwSlGvil~ell~g~  188 (358)
                      +||    +||||-  +...|||||||.++..+......--+..|.+||++...   .  ..+.+|||.||+++|.+++|.
T Consensus       143 VHRdlK~eNiLif~~df~rvKlcDFG~t~k~g~tV~~~~~~~~y~~pe~~~~~~ne~~~~~ps~D~WqfGIi~f~cltG~  222 (378)
T KOG1345|consen  143 VHRDLKAENILIFDADFYRVKLCDFGLTRKVGTTVKYLEYVNNYHAPELCDTVVNEKLVVNPSTDIWQFGIIFFYCLTGK  222 (378)
T ss_pred             hhcccccceEEEecCCccEEEeeecccccccCceehhhhhhcccCCcHHHhhccccceEecccccchheeeeeeeeecCC
Confidence            999    999984  33689999999987766554444456779999988743   2  478899999999999999999


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      +||......+    .....-+.-.-+..|                                    ........+++.+..
T Consensus       223 ~PWQka~~~d----~~Y~~~~~w~~rk~~------------------------------------~~P~~F~~fs~~a~r  262 (378)
T KOG1345|consen  223 FPWQKASIMD----KPYWEWEQWLKRKNP------------------------------------ALPKKFNPFSEKALR  262 (378)
T ss_pred             CcchhhhccC----chHHHHHHHhcccCc------------------------------------cCchhhcccCHHHHH
Confidence            9997433211    111111110000000                                    000112234677888


Q ss_pred             HHHhccccCCCCC---CCHHHHhcCcCcC
Q 045353          269 FLVPILDFVPEKR---PTAAQCLSHPWMS  294 (358)
Q Consensus       269 li~~~L~~dP~~R---~ta~elL~hpwf~  294 (358)
                      +.++-|..+|++|   .+++......|..
T Consensus       263 ~Fkk~lt~~~~drcki~~~kk~rk~~w~E  291 (378)
T KOG1345|consen  263 LFKKSLTPRFKDRCKIWTAKKMRKCLWKE  291 (378)
T ss_pred             HHHHhcCCcccccchhHHHHHHHHHHHHH
Confidence            9999999999999   6676666667764

>KOG1152 consensus Signal transduction serine/threonine kinase with PAS/PAC sensor domain [Signal transduction mechanisms]

Probab=99.83  E-value=3.1e-21  Score=177.98  Aligned_cols=163  Identities=19%  Similarity=0.258  Sum_probs=136.6

Q ss_pred             cccCccchhhh-HHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccC-CCCCcccccccccccChhhhhHHHH
Q 045353           29 SLYGDLTKNQK-KKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIP-NGVSVEERQNDSVVNNESSRDNEVK  105 (358)
Q Consensus        29 ~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~-~gg~L~~~~~~~~~~~~~~~~~~l~  105 (358)
                      +|-..|.++.| =.+--+.+..+.+. .+|.+|+.+.+..+ .+...||+||-. +|-+|+++++....+++.++..+++
T Consensus       599 IL~DtWvrDrkLGtVp~EIqIla~l~~~sH~NIlKlLdfFE-ddd~yyl~te~hg~gIDLFd~IE~kp~m~E~eAk~IFk  677 (772)
T KOG1152|consen  599 ILVDTWVRDRKLGTVPSEIQILATLNKHSHENILKLLDFFE-DDDYYYLETEVHGEGIDLFDFIEFKPRMDEPEAKLIFK  677 (772)
T ss_pred             hhhhhhhcccccCccchhHHHHHHhhhcCccchhhhhheee-cCCeeEEEecCCCCCcchhhhhhccCccchHHHHHHHH
Confidence            34445666555 23345556666554 34668887776655 356788999975 7789999999999999999999999


Q ss_pred             hhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec-CCCCCCCccCCCcchhHHHhCCCC-CcchhhhhhhH
Q 045353          106 NTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT-HKQFTNDIQTRQYRCPEVLLGSKY-STSADLWSFAC  179 (358)
Q Consensus       106 ~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~-~~~~~~~~gt~~Y~aPE~l~~~~~-~~~~DiwSlGv  179 (358)
                      |+..|+.++|+.+|+||    +|+.++.+|-+||+|||.|... ..++...+||..|.|||++.|.+| +..-|||++|+
T Consensus       678 QV~agi~hlh~~~ivhrdikdenvivd~~g~~klidfgsaa~~ksgpfd~f~gtv~~aapevl~g~~y~gk~qdiwalgi  757 (772)
T KOG1152|consen  678 QVVAGIKHLHDQGIVHRDIKDENVIVDSNGFVKLIDFGSAAYTKSGPFDVFVGTVDYAAPEVLGGEKYLGKPQDIWALGI  757 (772)
T ss_pred             HHHhccccccccCceecccccccEEEecCCeEEEeeccchhhhcCCCcceeeeeccccchhhhCCCccCCCcchhhhhhh
Confidence            99999999999999999    9999999999999999998665 456778899999999999999997 88899999999


Q ss_pred             HHHhhhcCCcccC
Q 045353          180 ICFELATGDVLFD  192 (358)
Q Consensus       180 il~ell~g~~pf~  192 (358)
                      +||.++....||+
T Consensus       758 llytivykenpyy  770 (772)
T KOG1152|consen  758 LLYTIVYKENPYY  770 (772)
T ss_pred             eeeEEEeccCCCc
Confidence            9999999998885

>KOG1024 consensus Receptor-like protein tyrosine kinase RYK/derailed [Signal transduction mechanisms]

Probab=99.80  E-value=8.8e-20  Score=161.49  Aligned_cols=217  Identities=13%  Similarity=0.083  Sum_probs=160.1

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--------cccc
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--------SVVN   95 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--------~~~~   95 (358)
                      .|-+|.+....|+=|-..+..+.-..-.  ++|+++..+...........+.++.+++-|.|..|+..        ....
T Consensus       316 ~v~vKTvk~~AS~iQv~~~L~es~lly~--~sH~nll~V~~V~ie~~~~P~V~y~~~~~gNLK~FL~~Cr~~~~~~aqtv  393 (563)
T KOG1024|consen  316 EVLVKTVKQHASQIQVNLLLQESMLLYG--ASHPNLLSVLGVSIEDYATPFVLYPATGVGNLKSFLQICRGDDPSYAQTV  393 (563)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhc--CcCCCccceeEEEeeccCcceEEEeccCcchHHHHHHHhccCCCccccch
Confidence            4556666666666666665555433333  34666655555555455677889999999999998871        1134


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCcc-----CCCcchhHHHhCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGS  166 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~g-----t~~Y~aPE~l~~~  166 (358)
                      ...++..+..|+..++.++|..++||.    .|.+|++..++||+|=.+++..-.......|     ...||+||.+...
T Consensus       394 tt~qlV~masQla~am~hlh~~~ViHkDiAaRNCvIdd~LqVkltDsaLSRDLFP~DYhcLGDnEnRPvkWMslEal~n~  473 (563)
T KOG1024|consen  394 TTIQLVLMASQLAMAMEHLHNHGVIHKDIAARNCVIDDQLQVKLTDSALSRDLFPGDYHCLGDNENRPVKWMSLEALQNS  473 (563)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcCcccchhhhhcceehhheeEEeccchhccccCcccccccCCCCCCcccccCHHHHhhh
Confidence            556778888999999999999999999    8999999999999999999765444334444     4579999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .|+.++|+|||||+||||.+ |+.|+..-+      ..+....+.+-                                 
T Consensus       474 ~yssasDvWsfGVllWELmtlg~~PyaeID------PfEm~~ylkdG---------------------------------  514 (563)
T KOG1024|consen  474 HYSSASDVWSFGVLLWELMTLGKLPYAEID------PFEMEHYLKDG---------------------------------  514 (563)
T ss_pred             hhcchhhhHHHHHHHHHHHhcCCCCccccC------HHHHHHHHhcc---------------------------------
Confidence            99999999999999999987 888885222      11111111000                                 


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                              -....|.+++.++..++.-||..+|++||+.+|+..
T Consensus       515 --------yRlaQP~NCPDeLf~vMacCWallpeeRPsf~Qlv~  550 (563)
T KOG1024|consen  515 --------YRLAQPFNCPDELFTVMACCWALLPEERPSFSQLVI  550 (563)
T ss_pred             --------ceecCCCCCcHHHHHHHHHHHhcCcccCCCHHHHHH
Confidence                    012346677899999999999999999999999864

>smart00221 STYKc Protein kinase; unclassified specificity

Probab=99.79  E-value=1.7e-19  Score=156.13  Aligned_cols=170  Identities=20%  Similarity=0.218  Sum_probs=136.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc-cChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV-NNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~-~~~~~   99 (358)
                      ++..+++|...........+.++++.+.....  .+.+++....... .....++++||+.+++|.+++..... ..+..
T Consensus        23 ~~~~~~iK~~~~~~~~~~~~~~~~e~~~~~~~--~~~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~   99 (225)
T smart00221       23 TGELVAVKVLKKEKTEKQREEFLREIRILKKL--KHPNIVKLYGVFE-DPEPLYLVMEYCEGGDLFDYLRKKGGKLSEEE   99 (225)
T ss_pred             CCcEEEEEeeccccchHHHHHHHHHHHHHHhC--CCCChhhheeeee-cCCceEEEEeccCCCCHHHHHHhcccCCCHHH
Confidence            36678899988776654556666666655553  4455555444332 23678899999999999999877655 78889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC----CCCccCCCcchhHHH-hCCCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF----TNDIQTRQYRCPEVL-LGSKYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~----~~~~gt~~Y~aPE~l-~~~~~~~  170 (358)
                      +..++.+++.++.++|+.+++|+    .||+++.++.++|+|||.+.......    ....++..|++||.+ ....++.
T Consensus       100 ~~~~~~~l~~~l~~lh~~~i~h~di~~~ni~v~~~~~~~l~d~g~~~~~~~~~~~~~~~~~~~~~~~~pe~~~~~~~~~~  179 (225)
T smart00221      100 ARFYLRQILEALEYLHSLGIVHRDLKPENILLGMDGLVKLADFGLARFIHRDLAALLKTVKGTPFYLAPEVLLGGKGYGE  179 (225)
T ss_pred             HHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeeCceeeEecCcccccccceeccCCcCCHhHhcCCCCCCc
Confidence            99999999999999999999988    89999999999999999997765432    455788899999999 5556888


Q ss_pred             chhhhhhhHHHHhhhcCCcccCC
Q 045353          171 SADLWSFACICFELATGDVLFDP  193 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~  193 (358)
                      ++|+|+||+++++|++|+.||..
T Consensus       180 ~~Dv~~lG~~~~~l~~g~~pf~~  202 (225)
T smart00221      180 AVDIWSLGVILYELLWGPEPFSG  202 (225)
T ss_pred             hhhHHHHHHHHHHHHHCCCCccc
Confidence            99999999999999999999964

Phosphotransferases. The specificity of this class of kinases can not be predicted. Possible dual-specificity Ser/Thr/Tyr kinase.

>KOG1033 consensus eIF-2alpha kinase PEK/EIF2AK3 [Translation, ribosomal structure and biogenesis]

Probab=99.72  E-value=4e-18  Score=156.99  Aligned_cols=170  Identities=22%  Similarity=0.290  Sum_probs=127.7

Q ss_pred             CCCCCcccccCCCCCccccccccc---ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce
Q 045353           70 SPDNFSVDTIPNGVSVEERQNDSV---VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        70 ~~~~~iv~e~~~gg~L~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      ...+||.|++|.-.+|.+++....   ..+...++.++.|+..++.|   .+.+|+    .||....+.++||.|||+..
T Consensus       328 ~~~lyI~Mn~c~~~tledWl~rr~~~e~~s~s~~~~~~~q~~~~~~y---k~~ihrdlkp~nif~~~d~q~kIgDFgl~t  404 (516)
T KOG1033|consen  328 KVYLYIQMNLCEKETLEDWLRRRRTGEERSLSLMLDIFKQIAPAVEY---KGLIHRDLKPSNIFFSDDDQLKIGDFGLVT  404 (516)
T ss_pred             ccchhhhhhhhhhhhHHHHhhCCCcccccchhHHHHHHHhhccchhh---ccchhhhccccccccccchhhhhhhhhhee
Confidence            456999999999999999997333   34567888999999999988   777777    59999999999999999986


Q ss_pred             ecCC---------CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHH
Q 045353          143 WTHK---------QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMEL  212 (358)
Q Consensus       143 ~~~~---------~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~  212 (358)
                      ....         ..+..+||.+||+||.+.|..|+.++||||||++|+|++. -...|.            ...-+..+
T Consensus       405 s~~~~~~~~~~~a~~t~~~gt~~YmsPEQi~g~~y~~kvdIyaLGlil~EL~~~f~T~~e------------r~~t~~d~  472 (516)
T KOG1033|consen  405 SQDKDETVAPAAASHTQQVGTLLYMSPEQIRGQQYSEKVDIYALGLILAELLIQFSTQFE------------RIATLTDI  472 (516)
T ss_pred             ecccCCcccchhhhhhhcccccccCCHHHHhhhhhhhhcchhhHHHHHHHHHHHhccHHH------------HHHhhhhh
Confidence            5432         2456699999999999999999999999999999999987 222231            11111111


Q ss_pred             h-CCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          213 L-GMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       213 ~-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                      - |.+|+..+.                                      + .+.-.+|+.+||...|.+||++.+.--|.
T Consensus       473 r~g~ip~~~~~--------------------------------------d-~p~e~~ll~~lls~~p~~RP~~~~~~~~~  513 (516)
T KOG1033|consen  473 RDGIIPPEFLQ--------------------------------------D-YPEEYTLLQQLLSPSPEERPSAIEVALHE  513 (516)
T ss_pred             hcCCCChHHhh--------------------------------------c-CcHHHHHHHHhcCCCcccCchHHHHhhhh
Confidence            1 112211110                                      0 23445899999999999999888887777


Q ss_pred             Cc
Q 045353          292 WM  293 (358)
Q Consensus       292 wf  293 (358)
                      |.
T Consensus       514 ~~  515 (516)
T KOG1033|consen  514 FL  515 (516)
T ss_pred             hc
Confidence            75

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.71  E-value=5.7e-18  Score=166.59  Aligned_cols=147  Identities=22%  Similarity=0.229  Sum_probs=116.3

Q ss_pred             hhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------------------CCCCccCCCcchhHHHhC
Q 045353          108 SQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------------------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus       108 ~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------------------~~~~~gt~~Y~aPE~l~~  165 (358)
                      +.++.|+|..+|+||    +|+||+.-|++|++|||+++..-..                  ....||||.|+|||++.-
T Consensus       153 vla~Eylh~ygivhrdlkpdnllIT~mGhiKlTDfgLsk~GLms~atnl~eg~I~k~t~Ef~dKqvcgTPeyiaPeVilr  232 (1205)
T KOG0606|consen  153 VLAVEYLHSYGIVHRDLKPDNLLITSMGHIKLTDFGLSKKGLMSLATNLKEGHIEKDTHEFQDKQVCGTPEYIAPEVILR  232 (1205)
T ss_pred             hHHhHhhccCCeecCCCCCCcceeeecccccccchhhhhhhhhhccchhhhcchHHHHHHhhhccccCCccccChhhhhh
Confidence            567889999999998    8999999999999999998642110                  123499999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .+|+..+|+|++|+|+|+.+-|..||.+.+      .++.+...+......|+.                          
T Consensus       233 qgygkpvdwwamGiIlyeFLVgcvpffGdt------peelfg~visd~i~wpE~--------------------------  280 (1205)
T KOG0606|consen  233 QGYGKPVDWWAMGIILYEFLVGCVPFFGDT------PEELFGQVISDDIEWPEE--------------------------  280 (1205)
T ss_pred             hccCCCccHHHHHHHHHHHheeeeeccCCC------HHHHHhhhhhhhcccccc--------------------------
Confidence            999999999999999999999999998765      344444444333322221                          


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC---CHHHHhcCcCcCCCCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP---TAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~---ta~elL~hpwf~~~~~~  299 (358)
                                   .....+++.++|.++|+.+|..|.   .+-++.+|+||+...+.
T Consensus       281 -------------dea~p~Ea~dli~~LL~qnp~~Rlgt~ga~evk~h~ff~~LDw~  324 (1205)
T KOG0606|consen  281 -------------DEALPPEAQDLIEQLLRQNPLCRLGTGGALEVKQHGFFQLLDWK  324 (1205)
T ss_pred             -------------CcCCCHHHHHHHHHHHHhChHhhcccchhhhhhhccceeecccc
Confidence                         223467899999999999999995   57788999999975443

>COG0515 SPS1 Serine/threonine protein kinase [General function prediction only / Signal transduction mechanisms / Transcription / DNA replication, recombination, and repair]

Probab=99.68  E-value=3.4e-16  Score=142.47  Aligned_cols=235  Identities=21%  Similarity=0.173  Sum_probs=168.0

Q ss_pred             cccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc---ccCh
Q 045353           23 ASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV---VNNE   97 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~---~~~~   97 (358)
                      ..+++|.+........  ...+.++....+... .+..++...... ......|++++|+.|+++.+++....   ....
T Consensus        23 ~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~-~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  100 (384)
T COG0515          23 KLVALKVLAKKLESKSKEVERFLREIQILASLN-HPPNIVKLYDFF-QDEGSLYLVMEYVDGGSLEDLLKKIGRKGPLSE  100 (384)
T ss_pred             cEEEEEeechhhccchhHHHHHHHHHHHHHHcc-CCcceeeEEEEE-ecCCEEEEEEecCCCCcHHHHHHhcccccCCCH
Confidence            3456777777766664  666777766555543 222345544444 22333799999999999998777664   6888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCCC---------CCCCccCCCcchhHHH
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHKQ---------FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~~---------~~~~~gt~~Y~aPE~l  163 (358)
                      .....++.+++.++.++|..+++||    +|||++..+ .++++|||++......         ....+||..|++||.+
T Consensus       101 ~~~~~~~~~~~~~l~~~H~~~~~hrd~kp~nil~~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~~~~~t~~~~~pe~~  180 (384)
T COG0515         101 SEALFILAQILSALEYLHSKGIIHRDIKPENILLDRDGRVVKLIDFGLAKLLPDPGSTSSIPALPSTSVGTPGYMAPEVL  180 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeecCCCCeEEEeccCcceecCCCCccccccccccccccccccCCHHHh
Confidence            8999999999999999999999999    899999988 7999999999754322         3566899999999999


Q ss_pred             hC---CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCC--chhhhcCCCCChhhhhccCCch
Q 045353          164 LG---SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMM--PRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       164 ~~---~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~--p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      .+   ..++...|+||+|++++++++|..||......   ................  ....                  
T Consensus       181 ~~~~~~~~~~~~D~~s~g~~~~~~~~~~~p~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~------------------  239 (384)
T COG0515         181 LGLSLAYASSSSDIWSLGITLYELLTGLPPFEGEKNS---SATSQTLKIILELPTPSLASPL------------------  239 (384)
T ss_pred             cCCCCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCcc---ccHHHHHHHHHhcCCccccccc------------------
Confidence            98   46899999999999999999999997654421   0012222222211111  0000                  


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                      ...........+.+++..++..+|..|.+..+...++|....
T Consensus       240 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  281 (384)
T COG0515         240 ----------------SPSNPELISKAASDLLKKLLAKDPKNRLSSSSDLSHDLLAHL  281 (384)
T ss_pred             ----------------CccccchhhHHHHHHHHHHHhcCchhcCCHHHHhhchHhhCc
Confidence                            000001123577899999999999999999999988777654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.56  E-value=3e-15  Score=127.20  Aligned_cols=184  Identities=17%  Similarity=0.150  Sum_probs=137.1

Q ss_pred             cCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChhhhhHHHHhhhhccccccCCCCCCc------ccc
Q 045353           54 AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNESSRDNEVKNTSQGVKGHRRPSRATR------KNL  125 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr------~NI  125 (358)
                      ++|+++..+......+ ..+.++..||+-|||+..+..  ....+..|+..+...+..|+.|+|+..++-+      ..+
T Consensus       244 fshpnilpvlgacnsp-pnlv~isq~mp~gslynvlhe~t~vvvd~sqav~faldiargmaflhslep~ipr~~lns~hv  322 (448)
T KOG0195|consen  244 FSHPNILPVLGACNSP-PNLVIISQYMPFGSLYNVLHEQTSVVVDHSQAVRFALDIARGMAFLHSLEPMIPRFYLNSKHV  322 (448)
T ss_pred             ecCCchhhhhhhccCC-CCceEeeeeccchHHHHHHhcCccEEEecchHHHHHHHHHhhHHHHhhcchhhhhhhcccceE
Confidence            6788887777776655 678899999999999998875  4566778999999999999999999877633      678


Q ss_pred             cccCCCcEEEE--ecCCceecCCCCCCCccCCCcchhHHHhCCCC---CcchhhhhhhHHHHhhhcCCcccCCCCCCCCC
Q 045353          126 LAAVDVQCKLV--DFGNACWTHKQFTNDIQTRQYRCPEVLLGSKY---STSADLWSFACICFELATGDVLFDPHSGDNYD  200 (358)
Q Consensus       126 Ll~~~~~vkL~--DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~---~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~  200 (358)
                      ++|++...+|.  |--++...    .....+|.||+||.+...+-   -.++|+|||.+++||+.|...||...+...  
T Consensus       323 midedltarismad~kfsfqe----~gr~y~pawmspealqrkped~n~raadmwsfaillwel~trevpfadlspme--  396 (448)
T KOG0195|consen  323 MIDEDLTARISMADTKFSFQE----VGRAYSPAWMSPEALQRKPEDLNIRAADMWSFAILLWELNTREVPFADLSPME--  396 (448)
T ss_pred             Eecchhhhheecccceeeeec----cccccCcccCCHHHHhcCchhcchhhhhHHHHHHHHHHhhccccccccCCchh--
Confidence            89988776654  32222211    23355789999999987662   456999999999999999999997554211  


Q ss_pred             CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC
Q 045353          201 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK  280 (358)
Q Consensus       201 ~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  280 (358)
                          .-.++ .+                                       .--....|+..+..+..|+.-|+.-||.+
T Consensus       397 ----cgmki-al---------------------------------------eglrv~ippgis~hm~klm~icmnedpgk  432 (448)
T KOG0195|consen  397 ----CGMKI-AL---------------------------------------EGLRVHIPPGISRHMNKLMNICMNEDPGK  432 (448)
T ss_pred             ----hhhhh-hh---------------------------------------ccccccCCCCccHHHHHHHHHHhcCCCCc
Confidence                00000 00                                       00023467778899999999999999999


Q ss_pred             CCCHHHHh
Q 045353          281 RPTAAQCL  288 (358)
Q Consensus       281 R~ta~elL  288 (358)
                      ||.++.++
T Consensus       433 rpkfdmiv  440 (448)
T KOG0195|consen  433 RPKFDMIV  440 (448)
T ss_pred             CCCcceeh
Confidence            99987653

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.54  E-value=2.1e-15  Score=149.03  Aligned_cols=176  Identities=17%  Similarity=0.193  Sum_probs=127.3

Q ss_pred             CCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce
Q 045353           67 KPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        67 ~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      ...+...|+|-+|.-. +|.|++.....+...+.+-++-|++.++.-+|..|+.|-    +||||++-..+.|+||..-+
T Consensus        90 ~~t~kAAylvRqyvkh-nLyDRlSTRPFL~~iEKkWiaFQLL~al~qcH~~gVcHGDIKsENILiTSWNW~~LtDFAsFK  168 (1431)
T KOG1240|consen   90 LVTDKAAYLVRQYVKH-NLYDRLSTRPFLVLIEKKWIAFQLLKALSQCHKLGVCHGDIKSENILITSWNWLYLTDFASFK  168 (1431)
T ss_pred             HHhhHHHHHHHHHHhh-hhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHcCccccccccceEEEeeechhhhhcccccC
Confidence            4445667888888764 788999988899999999999999999999999999988    99999999999999998654


Q ss_pred             ecC----CC--CC----CCccCCCcchhHHHhCC----------C-CCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCC
Q 045353          143 WTH----KQ--FT----NDIQTRQYRCPEVLLGS----------K-YSTSADLWSFACICFELAT-GDVLFDPHSGDNYD  200 (358)
Q Consensus       143 ~~~----~~--~~----~~~gt~~Y~aPE~l~~~----------~-~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~  200 (358)
                      ..-    ++  ++    +...-..|.|||.+...          + .+++.||||+||+++|+++ |+++|.        
T Consensus       169 PtYLPeDNPadf~fFFDTSrRRtCYiAPERFv~~~~~~~~~q~~~~L~paMDIFS~GCViaELf~Eg~PlF~--------  240 (1431)
T KOG1240|consen  169 PTYLPEDNPADFTFFFDTSRRRTCYIAPERFVSALGKTSVGQDAPLLTPAMDIFSAGCVIAELFLEGRPLFT--------  240 (1431)
T ss_pred             CccCCCCCcccceEEEecCCceeeecChHhhhccccccccCCcccccChhhhhhhhhHHHHHHHhcCCCccc--------
Confidence            321    11  11    11223369999998742          2 5788999999999999987 799993        


Q ss_pred             CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC
Q 045353          201 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK  280 (358)
Q Consensus       201 ~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  280 (358)
                        ..++-.....-...++.                               .+ +     .-.+..++.||..|++.||++
T Consensus       241 --LSQL~aYr~~~~~~~e~-------------------------------~L-e-----~Ied~~~Rnlil~Mi~rdPs~  281 (1431)
T KOG1240|consen  241 --LSQLLAYRSGNADDPEQ-------------------------------LL-E-----KIEDVSLRNLILSMIQRDPSK  281 (1431)
T ss_pred             --HHHHHhHhccCccCHHH-------------------------------HH-H-----hCcCccHHHHHHHHHccCchh
Confidence              22222211000000000                               00 0     001346789999999999999


Q ss_pred             CCCHHHHhcC
Q 045353          281 RPTAAQCLSH  290 (358)
Q Consensus       281 R~ta~elL~h  290 (358)
                      |.+|++.|+.
T Consensus       282 RlSAedyL~~  291 (1431)
T KOG1240|consen  282 RLSAEDYLQK  291 (1431)
T ss_pred             ccCHHHHHHh
Confidence            9999999985

>KOG1023 consensus Natriuretic peptide receptor, guanylate cyclase [Signal transduction mechanisms]

Probab=99.53  E-value=8.9e-15  Score=137.20  Aligned_cols=181  Identities=17%  Similarity=0.189  Sum_probs=130.5

Q ss_pred             CCCCcccccCCCCCccccccc-ccccChhhhhHHHHhhhhccccccCCCCC-Cc----ccccccCCCcEEEEecCCceec
Q 045353           71 PDNFSVDTIPNGVSVEERQND-SVVNNESSRDNEVKNTSQGVKGHRRPSRA-TR----KNLLAAVDVQCKLVDFGNACWT  144 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~h~~~~~-hr----~NILl~~~~~vkL~DFG~a~~~  144 (358)
                      +...+|-+||..|+|+|.+.. ...++.......++.++.|+.|+|...+. |-    .|.+++....+||+|||+....
T Consensus        20 ~~~~~i~~~c~rGsl~D~i~~~~~~~d~~F~~s~~rdi~~Gl~ylh~s~i~~hg~l~s~nClvd~~w~lklt~~Gl~~~~   99 (484)
T KOG1023|consen   20 PEMIVIWEYCSRGSLLDILSNEDIKLDYFFILSFIRDISKGLAYLHNSPIGYHGALKSSNCLVDSRWVLKLTDFGLNSLL   99 (484)
T ss_pred             CceEEEEeeecCccHHhHHhccccCccHHHHHHHHHHHHHHHHHHhcCcceeeeeeccccceeeeeEEEEechhhhcccc
Confidence            678899999999999999887 55678888999999999999999987774 44    8999999999999999998655


Q ss_pred             CC-----CCCCCccCCCcchhHHHhCCC-------CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHH
Q 045353          145 HK-----QFTNDIQTRQYRCPEVLLGSK-------YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMEL  212 (358)
Q Consensus       145 ~~-----~~~~~~gt~~Y~aPE~l~~~~-------~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~  212 (358)
                      ..     ......-...|.|||++.+..       .+.+.||||+|++++|+++...||+.......  ..+.+..+.. 
T Consensus       100 ~~~~~~~~~~~~~~~~lw~aPellr~~~~~~~~~~~~~~gdiYs~~ii~~ei~~r~~~~~~~~~~~~--~~eii~~~~~-  176 (484)
T KOG1023|consen  100 EETAEPEAHHPIRKALLWTAPELLRGALSQSLESALTQKGDIYSFGIIMYEILFRSGPFDLRNLVED--PDEIILRVKK-  176 (484)
T ss_pred             cccccccccchhHHHHhccCHHHhcccccccccccccccCCeehHHHHHHHHHhccCccccccccCC--hHHHHHHHHh-
Confidence            32     111112345699999998742       35679999999999999999999975432221  1222222222 


Q ss_pred             hCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          213 LGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       213 ~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                      .+..+..                              ...    .......+++..++..|+.-+|.+||+++++-
T Consensus       177 ~~~~~~r------------------------------P~i----~~~~e~~~~l~~l~~~cw~e~P~~rPs~~~i~  218 (484)
T KOG1023|consen  177 GGSNPFR------------------------------PSI----ELLNELPPELLLLVARCWEEIPEKRPSIEQIR  218 (484)
T ss_pred             cCCCCcC------------------------------cch----hhhhhcchHHHHHHHHhcccChhhCccHHHHH
Confidence            1111000                              000    00002234788999999999999999999884

>KOG0590 consensus Checkpoint kinase and related serine/threonine protein kinases [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=1.5e-14  Score=141.54  Aligned_cols=215  Identities=16%  Similarity=0.167  Sum_probs=157.2

Q ss_pred             hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccc-cccc-ccChhhhhHHHHhhhhcccc
Q 045353           36 KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQ-NDSV-VNNESSRDNEVKNTSQGVKG  113 (358)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~  113 (358)
                      ....++++.+....... ..|.+++.+...... ....|+.++|..||+++..+ .... .........++.++..++.|
T Consensus        61 ~~~~~~i~~e~~~~~~~-s~h~n~~~~~~~~~~-~~~~~~~~~~s~g~~~f~~i~~~~~~~~~~~~~~~~~~ql~s~l~~  138 (601)
T KOG0590|consen   61 EDSSEHIDTETDIQKKL-SKHSNTVHMIEPSSS-PRSYLLSLSYSDGGSLFSKISHPDSTGTSSSSASRYLPQLNSGLSY  138 (601)
T ss_pred             cchhhhcCccccccccc-cccccccccCCccCC-CcccccccCcccccccccccccCCccCCCCcchhhhhhhhccCccc
Confidence            33344444443333332 225555555554443 35678899999999999999 6665 67788899999999999999


Q ss_pred             cc-CCCCCCc----ccccccCCC-cEEEEecCCceecCC------CCCCCcc-CCCcchhHHHhCCC-CCcchhhhhhhH
Q 045353          114 HR-RPSRATR----KNLLAAVDV-QCKLVDFGNACWTHK------QFTNDIQ-TRQYRCPEVLLGSK-YSTSADLWSFAC  179 (358)
Q Consensus       114 ~h-~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~------~~~~~~g-t~~Y~aPE~l~~~~-~~~~~DiwSlGv  179 (358)
                      .| ..++.||    +|.+++..+ .++++|||+|.....      .....+| ++.|+|||...+.. .....|+||+|+
T Consensus       139 ~H~~~~~~h~~ikP~n~~l~~s~~~l~~~df~~At~~~~~~g~~~~~~~~~g~s~~y~a~E~~~~~~~~~~~~d~~S~g~  218 (601)
T KOG0590|consen  139 LHPENGVTHRDIKPSNSLLDESGSALKIADFGLATAYRNKNGAERSLKDRCGSSPPYGAPEHLSGKAYRGPSVDVWSLGI  218 (601)
T ss_pred             cCcccccccCCCCCccchhccCCCcccCCCchhhccccccCCcceeeecccCCCCCCCCcccccchhhcCCCcccccccc
Confidence            99 8888888    999999999 999999999965433      1334588 99999999999965 478899999999


Q ss_pred             HHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCC
Q 045353          180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFN  259 (358)
Q Consensus       180 il~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (358)
                      ++..+++|..|+........                             .++....              .........+
T Consensus       219 ~l~~~~~g~~p~~~~~~~~~-----------------------------~~~~~~~--------------~~~~~~~~~~  255 (601)
T KOG0590|consen  219 VLSAMLTGELPWDFPSRKDG-----------------------------RYSSWKS--------------NKGRFTQLPW  255 (601)
T ss_pred             cccccccCCCCccccccccc-----------------------------cceeecc--------------cccccccCcc
Confidence            99999999999864332110                             0000000              0000012233


Q ss_pred             hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          260 ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       260 ~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ...+....+++.++|..+|..|.+.+++..+||+..
T Consensus       256 ~~~~~~~~~~l~k~l~~~~~~r~s~~~~~~d~~~~~  291 (601)
T KOG0590|consen  256 NSISDQAHDLLHKILKENPSNRLSIEELKLDNWLSS  291 (601)
T ss_pred             ccCChhhhhcccccccCCchhccccccccccccccc
Confidence            445677889999999999999999999999999998

>KOG4158 consensus BRPK/PTEN-induced protein kinase [Signal transduction mechanisms]

Probab=99.50  E-value=2.9e-14  Score=127.24  Aligned_cols=167  Identities=15%  Similarity=0.101  Sum_probs=116.3

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----cccccc--CC--CcEEEEecCCce
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA--VD--VQCKLVDFGNAC  142 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~--~~--~~vkL~DFG~a~  142 (358)
                      ..+|+||--.. .+|..+++.... +-...+-++.|+++++.++|.+|+.||    +|||+.  +|  ..+.|+|||.+-
T Consensus       316 ~tlylvMkrY~-~tLr~yl~~~~~-s~r~~~~~laQlLEav~hL~~hgvAhRDlKSDNiL~ElddD~~P~LVvaDFGCcL  393 (598)
T KOG4158|consen  316 KTLYLVMKRYR-QTLREYLWTRHR-SYRTGRVILAQLLEAVTHLHKHGVAHRDLKSDNILLELDDDEIPQLVVADFGCCL  393 (598)
T ss_pred             ceEEEehhcch-hhHHHHHhcCCC-chHHHHHHHHHHHHHHHHHHHccchhhcccccceEEEecCCCCcEEEEcccceee
Confidence            45566665433 245556654433 334556789999999999999999999    999983  44  457999999874


Q ss_pred             ecCC---------CCCCCccCCCcchhHHHhCCC-----C-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHH
Q 045353          143 WTHK---------QFTNDIQTRQYRCPEVLLGSK-----Y-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLA  207 (358)
Q Consensus       143 ~~~~---------~~~~~~gt~~Y~aPE~l~~~~-----~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~  207 (358)
                      -.+.         ..-...|.-.-||||+....+     . -.++|.|+.|.+.||++....||++......+...    
T Consensus       394 Ad~~hGlqlpy~S~~Vd~GGNa~lmAPEi~ta~PGp~avvny~kAD~WA~GalaYEIfg~~NPFY~rGem~L~~r~----  469 (598)
T KOG4158|consen  394 ADDNHGLQLPYESDEVDLGGNAKLMAPEIATAVPGPNAVVNYEKADTWAAGALAYEIFGRSNPFYKRGEMLLDTRT----  469 (598)
T ss_pred             eccccccccccccccccCCCcceecchhhhhcCCCCceeeccchhhhhhhhhhHHHHhccCCcccccchheechhh----
Confidence            3221         122335778899999987532     1 24689999999999999999999875422211000    


Q ss_pred             HHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH
Q 045353          208 LMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA  285 (358)
Q Consensus       208 ~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~  285 (358)
                                                                -...+....++.+++.+.+|+..+|+.||++|+++.
T Consensus       470 ------------------------------------------Yqe~qLPalp~~vpp~~rqlV~~lL~r~pskRvsp~  505 (598)
T KOG4158|consen  470 ------------------------------------------YQESQLPALPSRVPPVARQLVFDLLKRDPSKRVSPN  505 (598)
T ss_pred             ------------------------------------------hhhhhCCCCcccCChHHHHHHHHHhcCCccccCCcc
Confidence                                                      000112245667788999999999999999999854

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.45  E-value=5.7e-14  Score=129.18  Aligned_cols=141  Identities=11%  Similarity=0.161  Sum_probs=98.4

Q ss_pred             cCcccccccccCccc----hhhhHHhhHHHHHhhhhccCCCcccc-ccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           21 SSASKENKSLYGDLT----KNQKKKVKKKAKKAAQGCAGTEAFDE-SEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      +|..+|+|.+.....    ...+..++++.+...++  .+.+++. +..     .+..|+|||||+|++|.... ..   
T Consensus        43 ~~~~vAiK~~~~~~~~~~~~~~~~~~~~E~~iL~~L--~h~~iv~~l~~-----~~~~~LVmE~~~G~~L~~~~-~~---  111 (365)
T PRK09188         43 PGTARAVRRRVSEVPWWSKPLARHLAAREIRALKTV--RGIGVVPQLLA-----TGKDGLVRGWTEGVPLHLAR-PH---  111 (365)
T ss_pred             CCeEEEEEEecccccccccHHHHHHHHHHHHHHHhc--cCCCCCcEEEE-----cCCcEEEEEccCCCCHHHhC-cc---
Confidence            455568887654422    23456678888777765  3444442 332     13579999999999997321 11   


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc-----ccccccCCCcEEEEecCCceecCCC-----------CCCCccCCCcch
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR-----KNLLAAVDVQCKLVDFGNACWTHKQ-----------FTNDIQTRQYRC  159 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr-----~NILl~~~~~vkL~DFG~a~~~~~~-----------~~~~~gt~~Y~a  159 (358)
                         ....++.++++++.++|+.|++||     +|||++.++.+||+|||+|+.....           .++..+++.|+|
T Consensus       112 ---~~~~~~~~i~~aL~~lH~~gIiHrDL~KP~NILv~~~~~ikLiDFGlA~~~~~~~~~~~~~~~~d~~~~~~~~~~~~  188 (365)
T PRK09188        112 ---GDPAWFRSAHRALRDLHRAGITHNDLAKPQNWLMGPDGEAAVIDFQLASVFRRRGALYRIAAYEDLRHLLKHKRTYA  188 (365)
T ss_pred             ---chHHHHHHHHHHHHHHHHCCCeeCCCCCcceEEEcCCCCEEEEECccceecccCcchhhhhhhhhhhhhhccCccCC
Confidence               124678899999999999999986     7999999999999999999764322           234578888999


Q ss_pred             hHHHhCCC------CCcchhhh
Q 045353          160 PEVLLGSK------YSTSADLW  175 (358)
Q Consensus       160 PE~l~~~~------~~~~~Diw  175 (358)
                      ||.+....      .+...|-|
T Consensus       189 pe~~~~~~~~~~~~~~~~~dgW  210 (365)
T PRK09188        189 PDALTPRERKILARKSLPSRIW  210 (365)
T ss_pred             cccCChhhhccccccccccCcE
Confidence            99987432      34446666

>PF14531 Kinase-like: Kinase-like; PDB: 3DZO_A 2W1Z_A 3BYV_A 3Q5Z_A 3Q60_A

Probab=99.44  E-value=3.5e-14  Score=125.34  Aligned_cols=93  Identities=16%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCC--------CCC
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS--------KYS  169 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~--------~~~  169 (358)
                      .+..|++.-+.++|..|++|.    +|++++.+|.+.|+||+.....+........+..|.+||+....        .++
T Consensus       149 ~lT~Q~I~lvA~Lh~~GlVHgdi~~~nfll~~~G~v~Lg~F~~~~r~g~~~~~~~~~~~~~PPe~~~~~~~~~~~~~~~t  228 (288)
T PF14531_consen  149 SLTVQMIRLVANLHSYGLVHGDIKPENFLLDQDGGVFLGDFSSLVRAGTRYRCSEFPVAFTPPELESCAGQFGQNNAPYT  228 (288)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEST-SGGGEEE-TTS-EEE--GGGEEETTEEEEGGGS-TTTS-HHHHHHHTSCHHSEEEE-
T ss_pred             HHHHHHHHHHHHHhhcceEecccceeeEEEcCCCCEEEcChHHHeecCceeeccCCCcccCChhhhhhhcccCcccceee
Confidence            334788889999999999988    99999999999999999887666554434556789999987542        378


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCC
Q 045353          170 TSADLWSFACICFELATGDVLFDPH  194 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~  194 (358)
                      .+.|.|+||+++|.|+++..||...
T Consensus       229 ~~~DaW~LG~~ly~lWC~~lPf~~~  253 (288)
T PF14531_consen  229 FATDAWQLGITLYSLWCGRLPFGLS  253 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-STCCC
T ss_pred             eccCHHHHHHHHHHHHHccCCCCCC
Confidence            9999999999999999999999644

>PRK10359 lipopolysaccharide core biosynthesis protein; Provisional

Probab=99.41  E-value=5.8e-14  Score=120.39  Aligned_cols=147  Identities=7%  Similarity=0.053  Sum_probs=96.2

Q ss_pred             cccCcccccccccCccchhhhHHh--------hHHHHHhhhhccCCCccccccCCCC-------CCCCCCCcccccCCCC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKV--------KKKAKKAAQGCAGTEAFDESEADSK-------PSSPDNFSVDTIPNGV   83 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~e~~~gg   83 (358)
                      ..++..+++|++.......++...        .++++..+.+  .+..+....+...       ..++..|+||||++|.
T Consensus        51 ~~~~~~~iiKvf~~~~~~~~~~~~~f~~g~~~e~Ea~~l~rL--~~~GI~~~~d~~~~~~~~~~~~~~~~~lvmEyi~G~  128 (232)
T PRK10359         51 DTDYGKYILKVFAPKVKRTERFLKSFVKGDYYENLIVQTDRV--RSEGLASLNDFYLLAERKTLRYAHTYIMLIEYIEGV  128 (232)
T ss_pred             ecCCCcEEEEEechhcCchHHHHHhhhhhHHHHHHHHHHHHH--HHCCCCcceEeeeecccccccccCCeEEEEEEECCc
Confidence            334567999999998887766533        3554445543  3333333332211       1246789999999999


Q ss_pred             CcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcch
Q 045353           84 SVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC  159 (358)
Q Consensus        84 ~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~a  159 (358)
                      +|.++...    ++    ..+.++..++..+|+.|++|+    .|||++.+| ++|+|||.+.......         ..
T Consensus       129 tL~~~~~~----~~----~~~~~i~~~l~~lH~~gi~H~Dikp~Nili~~~g-i~liDfg~~~~~~e~~---------a~  190 (232)
T PRK10359        129 ELNDMPEI----SE----DVKAKIKASIESLHQHGMVSGDPHKGNFIVSKNG-LRIIDLSGKRCTAQRK---------AK  190 (232)
T ss_pred             cHHHhhhc----cH----HHHHHHHHHHHHHHHcCCccCCCChHHEEEeCCC-EEEEECCCcccccchh---------hH
Confidence            99887421    11    234466666777777776655    899999999 9999999875442211         11


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhh
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELA  185 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell  185 (358)
                      ..++....|+.++|+||||+++....
T Consensus       191 d~~vler~y~~~~di~~lg~~~~~~~  216 (232)
T PRK10359        191 DRIDLERHYGIKNEIKDLGYYLLIYK  216 (232)
T ss_pred             HHHHHHhHhcccccccceeEeehHHH
Confidence            11445556888999999999987543

>KOG0606 consensus Microtubule-associated serine/threonine kinase and related proteins [Signal transduction mechanisms; General function prediction only]

Probab=99.39  E-value=3.5e-13  Score=133.38  Aligned_cols=189  Identities=22%  Similarity=0.239  Sum_probs=146.4

Q ss_pred             CCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce
Q 045353           67 KPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        67 ~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      ...-..+++||+|.+||+|...+.+..+.++.-.+.++..+.+...++|...+.|+    .|+|...+++.+++|||...
T Consensus       873 ~~~rsP~~L~~~~~~~~~~~Skl~~~~~~saepaRs~i~~~vqs~e~L~s~~r~h~~~~p~~~l~~~~gh~~l~~~~t~~  952 (1205)
T KOG0606|consen  873 FPCRSPLPLVGHYLNGGDLPSKLHNSGCLSAEPARSPILERVQSLESLHSSLRKHRDLKPDSLLIAYDGHRPLTDFGTLS  952 (1205)
T ss_pred             CCCCCCcchhhHHhccCCchhhhhcCCCcccccccchhHHHHhhhhccccchhhcccccccchhhcccCCcccCcccccc
Confidence            44556789999999999999999999999998899999999999999999988888    89999999999999998432


Q ss_pred             ecC-------C--C-------------------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCC
Q 045353          143 WTH-------K--Q-------------------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGD  188 (358)
Q Consensus       143 ~~~-------~--~-------------------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~  188 (358)
                      ...       .  .                         .....||+.|.+||.+.+...+..+|+|++|+++++.++|.
T Consensus       953 ~vg~~~p~~~~sg~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~t~~~laPe~~lg~~hgs~ad~~~~g~~l~e~l~g~ 1032 (1205)
T KOG0606|consen  953 KVGLIPPTTDLSGPSSSGTPRRLSRSERRPQLSADEARRKHAVVGTPDYLAPEILLGRRHGSAADWWSSGVCLFEVLTGI 1032 (1205)
T ss_pred             ccccccCcCCcccccccCccccccccccccccccchhhccccccCCCcccCCcccccccCCCcchhhhhhhhhhhhhcCC
Confidence            100       0  0                         11237899999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHH
Q 045353          189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMAD  268 (358)
Q Consensus       189 ~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (358)
                      +||......          .+++.+...-.                          -         -..-+...+..+.+
T Consensus      1033 pp~na~tpq----------~~f~ni~~~~~--------------------------~---------~p~g~~~~s~~aq~ 1067 (1205)
T KOG0606|consen 1033 PPFNAETPQ----------QIFENILNRDI--------------------------P---------WPEGPEEGSYEAQD 1067 (1205)
T ss_pred             CCCCCcchh----------hhhhccccCCC--------------------------C---------CCCCccccChhhhh
Confidence            999654421          11111100000                          0         00122334678889


Q ss_pred             HHHhccccCCCCCCCHH---HHhcCcCcCCCCCCC
Q 045353          269 FLVPILDFVPEKRPTAA---QCLSHPWMSAGPQLR  300 (358)
Q Consensus       269 li~~~L~~dP~~R~ta~---elL~hpwf~~~~~~~  300 (358)
                      ++..+|..+|.+|..+.   ++-.|+||+...+..
T Consensus      1068 ~~~~ll~~~~~qr~~a~~~~e~k~~~~~~~~~~~~ 1102 (1205)
T KOG0606|consen 1068 LINRLLTEEPTQRLGAKGAAEVKGHPFFQDVDWEN 1102 (1205)
T ss_pred             hhhhhhccCchhccCcccccccccCCccCCCCccc
Confidence            99999999999999987   899999999754433

>PRK12274 serine/threonine protein kinase; Provisional

Probab=99.27  E-value=1.2e-11  Score=104.11  Aligned_cols=157  Identities=14%  Similarity=0.014  Sum_probs=108.6

Q ss_pred             ccccccCccchhhh-------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           26 ENKSLYGDLTKNQK-------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        26 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..|++..+++....       ..+++|.+...++. ++..+..+...     ...|++|||+.|.+|...+...      
T Consensus        25 ~~k~~~~~l~~~~~~~~~~~~~l~~rE~~iL~~L~-~~~~vP~ll~~-----~~~~lvmeyI~G~~L~~~~~~~------   92 (218)
T PRK12274         25 ERKFVRRDLSAAPWWLRGVAWWLARREALALRQLD-GLPRTPRLLHW-----DGRHLDRSYLAGAAMYQRPPRG------   92 (218)
T ss_pred             CceeeecccccchhhhhhHHHHHHHHHHHHHHhcC-CCCCCCEEEEE-----cCEEEEEeeecCccHHhhhhhh------
Confidence            44555555555544       35677777777753 33334444332     3459999999999997644221      


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc-----ccccccCCCcEEEEecCCceecCCCCC----------------CCccCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR-----KNLLAAVDVQCKLVDFGNACWTHKQFT----------------NDIQTRQY  157 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr-----~NILl~~~~~vkL~DFG~a~~~~~~~~----------------~~~gt~~Y  157 (358)
                       ...++.++..++.++|+.|++|+     +|||++.++.++|+|||+|...+....                ....++.|
T Consensus        93 -~~~~~~qi~~~L~~lH~~GIvHrDL~kp~NILv~~~g~i~LIDFG~A~~~~~~~~~~r~L~~rDl~~llk~~~~y~~~~  171 (218)
T PRK12274         93 -DLAYFRAARRLLQQLHRCGVAHNDLAKEANWLVQEDGSPAVIDFQLAVRGNPRARWMRLLAREDLRHLLKHKRMYCPAA  171 (218)
T ss_pred             -hHHHHHHHHHHHHHHHHCcCccCCCCCcceEEEcCCCCEEEEECCCceecCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence             13466777888888888888887     699999999999999999975443221                01357889


Q ss_pred             chhHHHhCC-CCC-cchhhhhhhHHHHhhhcCCcccCCCC
Q 045353          158 RCPEVLLGS-KYS-TSADLWSFACICFELATGDVLFDPHS  195 (358)
Q Consensus       158 ~aPE~l~~~-~~~-~~~DiwSlGvil~ell~g~~pf~~~~  195 (358)
                      ++|+.-.-. ..+ ...++++.|+-+|.++|+..++.+.+
T Consensus       172 l~~~~~~~l~~~~~~~~~w~~~g~~~~~~~~~~~~~~~~~  211 (218)
T PRK12274        172 LTPVERRVLKRTSWIRELWFATGKPVYRFVTRRVLHWEDN  211 (218)
T ss_pred             CCHHHHhhhccchhHHHHHHHhcchHHHHHhccCCccccC
Confidence            999865543 233 56788999999999999998876544

>cd05147 RIO1_euk RIO kinase family; eukaryotic RIO1, catalytic domain

Probab=99.27  E-value=2.4e-12  Score=108.68  Aligned_cols=72  Identities=13%  Similarity=-0.032  Sum_probs=60.7

Q ss_pred             CCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccc-cCCCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           73 NFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGH-RRPSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        73 ~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      .||||||++|+++.........++...+..++.+++.++.++ |+.+++|+    +|||++ ++.++|+|||+|....
T Consensus        92 ~~iVmE~i~g~~l~~~~~~~~~~~~~~~~~i~~qi~~~L~~l~H~~giiHrDlkP~NIli~-~~~v~LiDFG~a~~~~  168 (190)
T cd05147          92 HVLVMEFIGDDGWAAPRLKDAPLSESKARELYLQVIQIMRILYQDCRLVHADLSEYNLLYH-DGKLYIIDVSQSVEHD  168 (190)
T ss_pred             CEEEEEEeCCCCCcchhhhcCCCCHHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEE-CCcEEEEEccccccCC
Confidence            489999999988776544445677888999999999999997 79999988    999998 4789999999986543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. This subfamily is composed of RIO1 proteins from eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle progression and c

>KOG1164 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.23  E-value=7.8e-11  Score=108.10  Aligned_cols=170  Identities=17%  Similarity=0.123  Sum_probs=123.4

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhcc--CCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCA--GTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNESS   99 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~~   99 (358)
                      .+|.|+.......... .++.+.+....+..  +...+..+.+.+.......||||+++ |.+|.++...  ...++...
T Consensus        46 ~~a~K~e~~~~~~~~~-~l~~E~~vl~~l~~~~~~~~~~~~~~~G~~~~~~~~iVM~l~-G~sL~dl~~~~~~~~fs~~T  123 (322)
T KOG1164|consen   46 EYAKKLEKKELGSKPS-VLKIEIQVLKKLEKKNGPSHFPKLLDHGRSTEDFNFIVMSLL-GPSLEDLRKRNPPGRFSRKT  123 (322)
T ss_pred             eEEEEEEEecccCCCc-cchhHHHHHHHHhhhcCCCCCCEEEEeccCCCceeEEEEecc-CccHHHHHHhCCCCCcCHhH
Confidence            5666666665444433 55555544443321  12233344444434556789999965 6677776642  35678888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCC-----CcEEEEecCCce--ecC-CC----------CCCCccCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-----VQCKLVDFGNAC--WTH-KQ----------FTNDIQTRQY  157 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-----~~vkL~DFG~a~--~~~-~~----------~~~~~gt~~Y  157 (358)
                      ...+..|++.++.++|+.|++||    +|+++...     ..+.|.|||+|+  ... ..          .....||..|
T Consensus       124 ~l~ia~q~l~~l~~lH~~G~iHRDiKp~N~~~g~~~~~~~~~~~llDfGlar~~~~~~~~~~~~~~~r~~~~~~rGT~ry  203 (322)
T KOG1164|consen  124 VLRIAIQNLNALEDLHSKGFIHRDIKPENFVVGQSSRSEVRTLYLLDFGLARRFKYVGDSGGNLRPPRPQKGLFRGTLRY  203 (322)
T ss_pred             HHHHHHHHHHHHHHHHhcCcccCCcCHHHeeecCCCCcccceEEEEecCCCccccccCCCCcccccCCCCccCCCCcccc
Confidence            99999999999999999999999    89999765     468999999997  311 10          1123599999


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHS  195 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~  195 (358)
                      .++.+..+...+.+-|+||++-++.+++.|..||.+..
T Consensus       204 ~S~~~H~~~e~~r~DDles~~Y~l~el~~g~LPW~~~~  241 (322)
T KOG1164|consen  204 ASINVHLGIEQGRRDDLESLFYMLLELLKGSLPWEALE  241 (322)
T ss_pred             ccHHHhCCCccCCchhhhhHHHHHHHHhcCCCCCcccc
Confidence            99999999999999999999999999999999996544

>cd05145 RIO1_like RIO kinase family; RIO1, RIO3 and similar proteins, catalytic domain

Probab=99.14  E-value=3.2e-11  Score=101.97  Aligned_cols=72  Identities=13%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             CCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           73 NFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        73 ~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      .|+||||++|+++..........+..+...++.+++.++.++|. .|++|+    +|||++ ++.++|+|||+|....
T Consensus        92 ~~lVmE~~~g~~~~~~~l~~~~~~~~~~~~i~~~l~~~l~~lH~~~givHrDlkP~NIll~-~~~~~liDFG~a~~~~  168 (190)
T cd05145          92 NVLVMEFIGDDGSPAPRLKDVPLEEEEAEELYEQVVEQMRRLYQEAGLVHGDLSEYNILYH-DGKPYIIDVSQAVELD  168 (190)
T ss_pred             CEEEEEEecCCCchhhhhhhccCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCChhhEEEE-CCCEEEEEcccceecC
Confidence            58999999999655433334456677888999999999999999 999988    999998 8999999999997654

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO1 is present in archaea, bacteria and eukaryotes. In addition, RIO3 is present in multicellular eukaryotes. RIO1 is essential for survival and is required for 18S rRNA processing, proper cell cycle pro

>KOG1165 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=99.05  E-value=3.9e-10  Score=98.93  Aligned_cols=174  Identities=16%  Similarity=0.056  Sum_probs=130.7

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~   97 (358)
                      +.++.+||||.-....-.-|-...-|--|..+    +...|-.++..+.-+ -...+|||++ |.||.|+.+-.+ .++.
T Consensus        50 l~nne~VAIKfEPrkS~APQLrdEYr~YKlL~----g~~GIP~vYYFGqeG-~~NiLVidLL-GPSLEDLFD~CgR~FSv  123 (449)
T KOG1165|consen   50 LYNNEPVAIKFEPRKSEAPQLRDEYRTYKLLG----GTEGIPQVYYFGQEG-KYNILVIDLL-GPSLEDLFDLCGRRFSV  123 (449)
T ss_pred             cccCceEEEEeccccCCcchHHHHHHHHHHHc----CCCCCCceeeecccc-chhhhhhhhh-CcCHHHHHHHhcCcccH
Confidence            56788999999887766555555555545444    334444555544432 2445688865 778888777544 4667


Q ss_pred             hhhhHHHHhhhhccccccCCCCCC----cccccccCC-----CcEEEEecCCceecCCCC----------CCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRAT----RKNLLAAVD-----VQCKLVDFGNACWTHKQF----------TNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~h----r~NILl~~~-----~~vkL~DFG~a~~~~~~~----------~~~~gt~~Y~  158 (358)
                      ...+-+..|++..+.++|+...|-    |+|+||...     ..|.|+|||+|+....+.          .+..||..||
T Consensus       124 KTV~miA~Qmi~rie~vH~k~LIYRDIKPdNFLIGrp~~k~~n~IhiiDFGmAK~YrDp~TkqHIPYrE~KSLsGTARYM  203 (449)
T KOG1165|consen  124 KTVAMIAKQMITRIEYVHEKDLIYRDIKPDNFLIGRPGTKDANVIHIIDFGMAKEYRDPKTKQHIPYREHKSLSGTARYM  203 (449)
T ss_pred             HhHHHHHHHHHHHHHHHHhcceeecccCccceeecCCCCCCCceEEEEeccchhhhcCccccccCccccccccccceeee
Confidence            788888999999999999988874    499999754     458999999997654332          2347999999


Q ss_pred             hhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCC
Q 045353          159 CPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDN  198 (358)
Q Consensus       159 aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~  198 (358)
                      +=-..+|..-+.+-|+=|||=+++..|-|..||.|-....
T Consensus       204 SINTHlGrEQSRRDDLEaLGHvFmYFLRGsLPWQGLKA~t  243 (449)
T KOG1165|consen  204 SINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKADT  243 (449)
T ss_pred             EeeccccchhhhhhhHHHhhhhhhhhccCCCccccccCcc
Confidence            9988889888999999999999999999999998765433

>KOG1163 consensus Casein kinase (serine/threonine/tyrosine protein kinase) [Signal transduction mechanisms]

Probab=98.95  E-value=1.2e-09  Score=92.02  Aligned_cols=172  Identities=16%  Similarity=0.045  Sum_probs=121.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      ..+|..||+|+-+...-.-+--...+.-+..+    +...+-.+.. ..+......+||+++ |.||.++..-. ..++.
T Consensus        37 i~~ge~VAiK~Es~~a~hpqL~yEskvY~iL~----~g~GiP~i~~-y~~e~~ynvlVMdLL-GPsLEdLfnfC~R~ftm  110 (341)
T KOG1163|consen   37 ITSGEEVAIKLESSKAKHPQLLYESKVYRILQ----GGVGIPHIRH-YGTEKDYNVLVMDLL-GPSLEDLFNFCSRRFTM  110 (341)
T ss_pred             ccCCceEEEEeecccCCCcchhHHHHHHHHhc----cCCCCchhhh-hccccccceeeeecc-CccHHHHHHHHhhhhhH
Confidence            45778899998877665444333333222222    2222222222 222335567899976 67888877643 23555


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC----------CCCCccCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCP  160 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aP  160 (358)
                      ....-...|++..+.|+|..+.|||    +|+|+.-.   ..+-|+|||+|+.....          .....||..|.+-
T Consensus       111 kTvLMLaDQml~RiEyvH~r~fiHRDIKPdNFLMGlgrh~~kl~LIDFGLaKky~d~~t~~HIpyre~r~ltGTaRYASi  190 (341)
T KOG1163|consen  111 KTVLMLADQMLSRIEYVHLRNFIHRDIKPDNFLMGLGRHCNKLYLIDFGLAKKYRDIRTRQHIPYREDRNLTGTARYASI  190 (341)
T ss_pred             HhHHHHHHHHHHHHHHHHhhccccccCCccceeeccccccceEEEEeccchhhhccccccccCccccCCccceeeeehhh
Confidence            6777778899999999999999999    99998644   56799999999654321          2334799999998


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCC
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSG  196 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~  196 (358)
                      -...|...+.+-|+=|+|-+|..+..|..||.+-..
T Consensus       191 nAh~g~eqSRRDDmeSvgYvLmYfnrG~LPWQglka  226 (341)
T KOG1163|consen  191 NAHLGIEQSRRDDMESVGYVLMYFNRGSLPWQGLKA  226 (341)
T ss_pred             hhhhhhhhhhhhhhhhhcceeeeeecCCCcccccch
Confidence            888887778899999999999999999999987653

>smart00090 RIO RIO-like kinase

Probab=98.93  E-value=7.4e-10  Score=96.76  Aligned_cols=74  Identities=12%  Similarity=0.092  Sum_probs=61.7

Q ss_pred             CCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCC-CCCc----ccccccCCCcEEEEecCCceecCC
Q 045353           72 DNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPS-RATR----KNLLAAVDVQCKLVDFGNACWTHK  146 (358)
Q Consensus        72 ~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~-~~hr----~NILl~~~~~vkL~DFG~a~~~~~  146 (358)
                      ..|+||||++|++|.................++.+++.++.++|+.+ ++|+    +|||++ ++.++|+|||.|.....
T Consensus       122 ~~~lV~E~~~g~~L~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~g~iiH~Dikp~NIli~-~~~i~LiDFg~a~~~~~  200 (237)
T smart00090      122 RNVLVMEFIGGDGLPAPRLKDVEPEEEEEFELYDDILEEMRKLYKEGELVHGDLSEYNILVH-DGKVVIIDVSQSVELDH  200 (237)
T ss_pred             CceEEEEEecCCcccccccccCCcchHHHHHHHHHHHHHHHHHHhcCCEEeCCCChhhEEEE-CCCEEEEEChhhhccCC
Confidence            45899999999998876544444555667889999999999999999 9988    999999 88999999999865443

>KOG1166 consensus Mitotic checkpoint serine/threonine protein kinase [Cell cycle control, cell division, chromosome partitioning]

Probab=98.91  E-value=9.6e-10  Score=110.88  Aligned_cols=164  Identities=13%  Similarity=0.048  Sum_probs=120.8

Q ss_pred             cccccCcccccccccCc------cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc
Q 045353           17 VVTESSASKENKSLYGD------LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        17 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      .+.-+|.-+|+|+....      ...+-+.|+|    -...-+.-+     +..... ..+..++|+||.+-|+|.++++
T Consensus       717 a~~~~~~~~alK~e~P~~~WEfYI~~q~~~RLk----~~~~~~~~~-----~~~a~~-~~~~S~lv~ey~~~Gtlld~~N  786 (974)
T KOG1166|consen  717 ATHSNGKLVALKVEKPPNPWEFYICLQVMERLK----PQMLPSIMH-----ISSAHV-FQNASVLVSEYSPYGTLLDLIN  786 (974)
T ss_pred             eecCCCcEEEEEeecCCCceeeeehHHHHHhhc----hhhhcchHH-----HHHHHc-cCCcceeeeeccccccHHHhhc
Confidence            34445777788887773      3344555555    111111111     111111 1234477999999999999999


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-------CCcEEEEecCCceecC-----CCCCCCccC
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-------DVQCKLVDFGNACWTH-----KQFTNDIQT  154 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-------~~~vkL~DFG~a~~~~-----~~~~~~~gt  154 (358)
                      ....+++.-...+..+++.-+..+|..+|||-    +|.||..       ...++|+|||.|..+.     ..+...++|
T Consensus       787 ~~~~m~e~lv~~~~~qml~ive~lH~~~IIHgDiKPDNfll~~~~~~~~~~~~l~lIDfG~siDm~lfp~~~~F~~~~~t  866 (974)
T KOG1166|consen  787 TNKVMDEYLVMFFSCQMLRIVEHLHAMGIIHGDIKPDNFLLRREICADSDSKGLYLIDFGRSIDMKLFPDGTKFKAVWHT  866 (974)
T ss_pred             cCCCCCchhhhHHHHHHHHHHHHHHhcceecccCCcceeEeecccCCCCcccceEEEecccceeeeEcCCCcEEeeeecc
Confidence            88888888888888888888888888888876    8999842       3458999999995432     346667899


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL  190 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~p  190 (358)
                      -.+-++|+..|.++++.+|.|.+..+++.||.|++.
T Consensus       867 d~f~C~EM~~grpWtYq~DyfGlAa~~h~mLFG~y~  902 (974)
T KOG1166|consen  867 DLFDCIEMREGRPWTYQIDYFGLAATVHVMLFGKYM  902 (974)
T ss_pred             ccchhHHHhcCCCCchhhhhHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999753

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=8.8e-09  Score=97.37  Aligned_cols=225  Identities=16%  Similarity=0.123  Sum_probs=147.6

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      +.+...|+|.....++.- .+++-.++.-..... ..+...+. ........+.+|+-+|+|. .+|..+... ...+..
T Consensus       141 ~s~~~~a~k~s~~p~s~p~~~~~k~~~~~s~~~i-~~~~~~v~-~~~~~e~~~~lfiqtE~~~-~sl~~~~~~~~~~~p~  217 (524)
T KOG0601|consen  141 ESPHKFAVKKSKIPFSPPLDSKRKLREFLSHHKI-DSHENPVR-DSPAWEGSGILFIQTELCG-ESLQSYCHTPCNFLPD  217 (524)
T ss_pred             cCCcccccccccCCCCCccccccccchhhccccc-Cccccccc-cCcccccCCcceeeecccc-chhHHhhhcccccCCc
Confidence            444555666655555522 222222332222211 12223333 3334445678898889888 566665554 344777


Q ss_pred             hhhhHHHHhhhh----ccccccCCCCCCc----ccccccCC-CcEEEEecCCceecCCCC--------CCCccCCCcchh
Q 045353           98 SSRDNEVKNTSQ----GVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTHKQF--------TNDIQTRQYRCP  160 (358)
Q Consensus        98 ~~~~~~l~~~~~----~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~~~~--------~~~~gt~~Y~aP  160 (358)
                      ..+.+.+.+..+    |+..+|...++|-    +||.+..+ ..++++|||+....+...        ...-|...|++|
T Consensus       218 ~~l~~~~~~~~~~~~~al~~~hs~~~~~~~~kp~~i~~~~~~~s~~~~df~~v~~i~~~~~~~~~~~~~r~~~~~~Y~~k  297 (524)
T KOG0601|consen  218 NLLWNSLRDWLSRDVTALSHLHSNNIVHDDLKPANIFTTSDWTSCKLTDFGLVSKISDGNFSSVFKVSKRPEGDCIYAAK  297 (524)
T ss_pred             hhhhhHHhhhhhcccccccccCCCcccccccchhheecccccceeecCCcceeEEccCCccccceeeeecCCCCceEeCh
Confidence            888999999999    9999999888866    89999999 889999999986654321        122566789999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      |++.+ -++...||||+|.++.+..++..++.......+.                                .   ++..
T Consensus       298 e~~~~-l~~~~~di~sl~ev~l~~~l~~~~~~~g~~~~W~--------------------------------~---~r~~  341 (524)
T KOG0601|consen  298 ELLNG-LATFASDIFSLGEVILEAILGSHLPSVGKNSSWS--------------------------------Q---LRQG  341 (524)
T ss_pred             hhhcc-ccchHhhhcchhhhhHhhHhhcccccCCCCCCcc--------------------------------c---cccc
Confidence            99876 4788999999999999999987766433211110                                0   0000


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                  ....++-...+..+...+..|++.+|-.|+++..+++|+++..
T Consensus       342 ------------~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s  384 (524)
T KOG0601|consen  342 ------------YIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHS  384 (524)
T ss_pred             ------------cCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccc
Confidence                        0011122222445556899999999999999999999999875

>TIGR03724 arch_bud32 Kae1-associated kinase Bud32

Probab=98.83  E-value=2.5e-09  Score=91.05  Aligned_cols=114  Identities=10%  Similarity=0.080  Sum_probs=75.1

Q ss_pred             ccCcccccccccCccchh-------hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-------QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      -.|..+++|.........       ...++.++.+....+...+........   ......++||||++|++|.+++...
T Consensus        15 ~~~~~~viK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~i~~p~~~~---~~~~~~~lv~e~~~g~~l~~~~~~~   91 (199)
T TIGR03724        15 FLGLKAVIKERVPKSYRHPELDERIRRERTRNEARLLSRARKAGVNTPVVYD---VDPDNKTIVMEYIEGKPLKDVIEEG   91 (199)
T ss_pred             cCCccEEEEEecCCcCcCchHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE---EECCCCEEEEEEECCccHHHHHhhc
Confidence            356677777755433221       234445555444443221111111111   1234568999999999999876543


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT  144 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~  144 (358)
                      ..       .++.++..++.++|+.+++|+    .|||++ ++.++|+|||++...
T Consensus        92 ~~-------~~~~~i~~~l~~lH~~gi~H~Dl~~~Nil~~-~~~~~liDfg~a~~~  139 (199)
T TIGR03724        92 ND-------ELLREIGRLVGKLHKAGIVHGDLTTSNIIVR-DDKLYLIDFGLGKYS  139 (199)
T ss_pred             HH-------HHHHHHHHHHHHHHHCCeecCCCCcceEEEE-CCcEEEEECCCCcCC
Confidence            21       678888899999999999887    899999 899999999998654

Members of this protein family are the Bud32 protein associated with Kae1 (kinase-associated endopeptidase 1) in the Archaea. In many Archaeal genomes, Kae1 and Bud32 are fused. The complex is homologous to the Kae1 and Bud32 subunits of the eukaryotic KEOPS complex, an apparently ancient protein kinase-containing molecular machine.

>PRK10345 hypothetical protein; Provisional

Probab=98.82  E-value=2.4e-09  Score=91.47  Aligned_cols=113  Identities=11%  Similarity=0.063  Sum_probs=80.7

Q ss_pred             cccccccCccchhhhHHhhHHHHHhhhhcc---CCCccccccCCCCCCCC--CCC-ccccc--CCCCCcccccccccccC
Q 045353           25 KENKSLYGDLTKNQKKKVKKKAKKAAQGCA---GTEAFDESEADSKPSSP--DNF-SVDTI--PNGVSVEERQNDSVVNN   96 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~--~~~-iv~e~--~~gg~L~~~~~~~~~~~   96 (358)
                      .|+|+....-. ...+.++++.+...++..   .+++|++.+....+..+  ..+ +||||  +.+|+|.+++... .+.
T Consensus        27 k~IKv~~~~~~-~~~~~~~rEi~~l~~L~~~~~~h~nIvr~yg~~et~~g~g~v~~~I~e~~G~~~~tL~~~l~~~-~~~  104 (210)
T PRK10345         27 RCIKIVYHRGD-GGDKEIRRELKYYAHLSRRLIDWSGIPRYYGTVETDCGTGYVYDVIADFDGKPSITLTEFAEQC-RYE  104 (210)
T ss_pred             eEEEEEecccc-chHHHHHHHHHHHHHhhccCCCCcccceeeEEEEeCCCCeEEEEEEecCCCCcchhHHHHHHcc-ccc
Confidence            36776654322 234567888877776532   56789999988777653  433 78999  5589999999764 233


Q ss_pred             hhhhhHHHHhhhhcc-ccccCCCCCCc----ccccccC----CCcEEEEecCCc
Q 045353           97 ESSRDNEVKNTSQGV-KGHRRPSRATR----KNLLAAV----DVQCKLVDFGNA  141 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~-~~~h~~~~~hr----~NILl~~----~~~vkL~DFG~a  141 (358)
                      +.  ..++.+++.++ .|+|+.+|+||    +|||++.    ++.++|+||+.+
T Consensus       105 e~--~~~~~~~L~~l~~yLh~~~IvhrDlKp~NILl~~~~~~~~~~~LiDg~G~  156 (210)
T PRK10345        105 ED--VAQLRQLLKKLKRYLLDNRIVTMELKPQNILCQRISESEVIPVVCDNIGE  156 (210)
T ss_pred             Hh--HHHHHHHHHHHHHHHHHCCEeecCCCHHHEEEeccCCCCCcEEEEECCCC
Confidence            33  45678888777 89999999999    9999974    348999995543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.80  E-value=2.8e-09  Score=102.27  Aligned_cols=154  Identities=16%  Similarity=0.222  Sum_probs=108.4

Q ss_pred             hhhHHHHhhhhcccccc-CCCCCCc----ccccccCCCcEEEEecCCceecCCCCC-------CC-----ccCCCcchhH
Q 045353           99 SRDNEVKNTSQGVKGHR-RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFT-------ND-----IQTRQYRCPE  161 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h-~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~-------~~-----~gt~~Y~aPE  161 (358)
                      .+..-+.+.+.|+.|+| +.+++|.    ++|.++..+.+||+.|+.+........       ..     .-..-|.|||
T Consensus       100 ~~f~nl~~v~dgl~flh~sAk~VH~ni~p~~i~~na~~~wkl~Gf~f~v~~~~~~~~p~~~yd~~lp~~~~~~~~f~apE  179 (700)
T KOG2137|consen  100 DGFANLGNVADGLAFLHRSAKVVHGNIQPEAIVVNANGDWKLAGFSFCVNANGPTEYPFSEYDPPLPLLLQPHLNFLAPE  179 (700)
T ss_pred             HhhhhhhcccchhhhhccCcceeecccchhheeeccCcceeeccchhhhccCCCCccccccCCCCCChhhccCcccccch
Confidence            33344555567778777 4677774    999999999999999998854433110       00     2245699999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhh-cCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELA-TGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell-~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+...+.++|+||+||++|.+. .|+..|...+......       .....+.                         
T Consensus       180 ~~~~~~~~~~sd~fSlG~li~~i~~~gk~i~~a~~~~~~~~-------~~~~~~~-------------------------  227 (700)
T KOG2137|consen  180 YLLGTTNTPASDVFSLGVLIYTIYNGGKSIIAANGGLLSYS-------FSRNLLN-------------------------  227 (700)
T ss_pred             hhccccccccccceeeeeEEEEEecCCcchhhccCCcchhh-------hhhcccc-------------------------
Confidence            999988899999999999999998 6777776544221100       0000000                         


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                  ...+.....++.++.+-|.++|..++..||++.+++..|||.+.
T Consensus       228 ------------~~~~~~s~~~p~el~~~l~k~l~~~~~~rp~~~~l~~~~ff~D~  271 (700)
T KOG2137|consen  228 ------------AGAFGYSNNLPSELRESLKKLLNGDSAVRPTLDLLLSIPFFSDP  271 (700)
T ss_pred             ------------cccccccccCcHHHHHHHHHHhcCCcccCcchhhhhcccccCCc
Confidence                        00112335567889999999999999999999999999999974

>cd05144 RIO2_C RIO kinase family; RIO2, C-terminal catalytic domain

Probab=98.75  E-value=1.1e-08  Score=86.98  Aligned_cols=69  Identities=12%  Similarity=0.072  Sum_probs=56.9

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      ...++||||++|++|......      .....++.+++.++.++|..+++|+    +||+++.++.++|+|||+|....
T Consensus       104 ~~~~lv~e~~~g~~L~~~~~~------~~~~~~~~~i~~~l~~lh~~gi~H~Dl~p~Nill~~~~~~~liDfg~~~~~~  176 (198)
T cd05144         104 NRHAVVMEYIDGVELYRVRVL------EDPEEVLDEILEEIVKAYKHGIIHGDLSEFNILVDDDEKIYIIDWPQMVSTD  176 (198)
T ss_pred             CCceEEEEEeCCcchhhcccc------ccHHHHHHHHHHHHHHHHHCCCCcCCCCcccEEEcCCCcEEEEECCccccCC
Confidence            456899999999999875431      3456677888889999999999987    99999999999999999985443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO2 is present in archaea and eukaryotes. It contains an N-terminal winged helix (wHTH) domain and a C-terminal RIO kinase catalytic domain. The wHTH domain is primarily seen in DNA-binding proteins, although some wHTH dom

>PRK01723 3-deoxy-D-manno-octulosonic-acid kinase; Reviewed

Probab=98.75  E-value=6.1e-09  Score=91.15  Aligned_cols=103  Identities=12%  Similarity=0.004  Sum_probs=69.0

Q ss_pred             hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCC---CCCcccccCCC-CCcccccccccccChhhhhHHHHhhhhcc
Q 045353           36 KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSP---DNFSVDTIPNG-VSVEERQNDSVVNNESSRDNEVKNTSQGV  111 (358)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~iv~e~~~g-g~L~~~~~~~~~~~~~~~~~~l~~~~~~~  111 (358)
                      ...+.+..++......+...+.+............+   ..++||||++| .+|.+++.... +.+    ..+.++..++
T Consensus        81 ~~~~~r~~rE~~ll~~L~~~gi~vP~pl~~~~~~~~~~~~~~lV~e~l~G~~~L~~~l~~~~-l~~----~~~~~i~~~l  155 (239)
T PRK01723         81 GLERTRAFAEFRLLAQLYEAGLPVPRPIAARVVRHGLFYRADILIERIEGARDLVALLQEAP-LSE----EQWQAIGQLI  155 (239)
T ss_pred             chhhhHHHHHHHHHHHHHhCCCCCceeEeeeeeecCcceeeeEEEEecCCCCCHHHHHhcCC-CCH----HHHHHHHHHH
Confidence            345667777777666654333222222222111122   23599999998 68888775432 222    2366788889


Q ss_pred             ccccCCCCCCc----ccccccCCCcEEEEecCCcee
Q 045353          112 KGHRRPSRATR----KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus       112 ~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~  143 (358)
                      .++|+.|++|+    .|||++.++.++|+|||.+..
T Consensus       156 ~~lH~~GI~HrDlkp~NILv~~~~~v~LIDfg~~~~  191 (239)
T PRK01723        156 ARFHDAGVYHADLNAHNILLDPDGKFWLIDFDRGEL  191 (239)
T ss_pred             HHHHHCCCCCCCCCchhEEEcCCCCEEEEECCCccc
Confidence            99999999988    899999999999999998854

>KOG0576 consensus Mitogen-activated protein kinase kinase kinase kinase (MAP4K), germinal center kinase family [Signal transduction mechanisms]

Probab=98.73  E-value=2.6e-08  Score=94.94  Aligned_cols=227  Identities=14%  Similarity=0.102  Sum_probs=154.7

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCC--CcccccccccccChhhhh
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGV--SVEERQNDSVVNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg--~L~~~~~~~~~~~~~~~~  101 (358)
                      +-|-|.|...++...  --+|.+...-+.+ .+++.+.-+..+...+...||+|+||.+|  +.......+..+...+.+
T Consensus       263 ptaeklL~h~fvs~~--l~~rl~~eLLdK~-n~P~~~v~~~~d~~~E~~~~i~~~i~s~~rs~~~~~~~se~~~~~~~~~  339 (829)
T KOG0576|consen  263 PTAEKLLQHPFVSQT--LSRRLAIELLDKV-NNPNPVVRYLEDYDGEDYLWIPMRICSTGRSSALEMTVSEIALEQYQFA  339 (829)
T ss_pred             CChhhheeceeeccc--hhhHHHHHHHHHc-cCCCCcccccccCCcccccchhhhhhcCCccccccCChhhHhhhhhhhh
Confidence            345566666666665  2233334444544 44443333444445567889999999999  444455566777788899


Q ss_pred             HHHHhhhhccccccCCCCCCcccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcchhhhhhhH
Q 045353          102 NEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC  179 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGv  179 (358)
                      ..++.-..++.++|+.--+||+|||..+ +..|+.||+.+......  .++..+|+.++|||+.....+....|.|++|+
T Consensus       340 ~~~r~et~~l~~l~~~~~~~~d~~l~s~-~~~~~~~~~v~~~L~~~~~~~t~~~~~~~~~pev~~~~~~~~~p~~~~~~~  418 (829)
T KOG0576|consen  340 YPLRKETRPLAELHSSYKVHRDNILGSE-EEVKLLDFAVPPQLTRTMKPRTAIGTPEPLAPEVIQENTIDGCPDSGSLAV  418 (829)
T ss_pred             hhhhhhcccccccccccccCcccccccc-cccccccccCCcccCcccccccCCCCCCCCCchhhcccccccCCCccCCCc
Confidence            9999999999999998778999999876 67899999998776655  45668999999999999999999999999999


Q ss_pred             HHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCC
Q 045353          180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFN  259 (358)
Q Consensus       180 il~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  259 (358)
                      -..++.-|-+|-........            ..|..|         +...         +.....|             
T Consensus       419 ~~~~~ap~~pPr~~P~~~~~------------~~g~~p---------~s~~---------L~~~~aw-------------  455 (829)
T KOG0576|consen  419 SAIQMAPGLPPRSSPPAVLP------------MIGNGP---------NSPM---------LTDKSAW-------------  455 (829)
T ss_pred             chhhcCCCCCCCCCCccccC------------CCCCCC---------Cccc---------cchhhhc-------------
Confidence            87788777766532110000            000000         0000         0000000             


Q ss_pred             hhhHHHHH-HHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          260 ERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       260 ~~~~~~~~-~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                         ++.+. ++...|+..-|..|++...++-|.+|++++...
T Consensus       456 ---~~~~~~~~~~~~~~g~P~~pkv~mgacfsKvfngCpl~i  494 (829)
T KOG0576|consen  456 ---SPVFHRDFPAPCLNGLPPTPKVHMGACFSKVFNGCPLRI  494 (829)
T ss_pred             ---CcccccCCcccccCCCCCCCcchhhHHHHHHhccCcccc
Confidence               01111 477789999999999999999999999876544

>PRK14879 serine/threonine protein kinase; Provisional

Probab=98.70  E-value=1.3e-08  Score=87.41  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=58.1

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCcee
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~  143 (358)
                      ...++||||++|++|.+++.....    ....++.++..++.++|+.+++|+    .|||++ ++.++|+|||.+..
T Consensus        72 ~~~~lv~e~~~G~~L~~~~~~~~~----~~~~i~~~i~~~l~~lH~~~i~H~Dl~p~Nil~~-~~~~~liDf~~a~~  143 (211)
T PRK14879         72 ENFIIVMEYIEGEPLKDLINSNGM----EELELSREIGRLVGKLHSAGIIHGDLTTSNMILS-GGKIYLIDFGLAEF  143 (211)
T ss_pred             CCCEEEEEEeCCcCHHHHHHhccH----HHHHHHHHHHHHHHHHHhCCcccCCCCcccEEEE-CCCEEEEECCcccC
Confidence            467899999999999998764322    667888889999999999999988    899999 78899999999865

>KOG1266 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.67  E-value=1.4e-08  Score=89.29  Aligned_cols=172  Identities=14%  Similarity=0.172  Sum_probs=113.6

Q ss_pred             CCCCcccccCCCCCccccccc----ccccChhhhhHHHHhhhhccccccC--CCCCCc----ccccccCCCcEEEEecCC
Q 045353           71 PDNFSVDTIPNGVSVEERQND----SVVNNESSRDNEVKNTSQGVKGHRR--PSRATR----KNLLAAVDVQCKLVDFGN  140 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~h~--~~~~hr----~NILl~~~~~vkL~DFG~  140 (358)
                      .....++|||+.|++..++..    ...+....-..++.|++.|+.|+|.  .-++|+    +-|.+..+|-+||.----
T Consensus       145 ~rviFiteymssgs~~~fLkrt~~~~~a~~~~~wkkw~tqIlsal~yLhs~~PpiihgnlTc~tifiq~ngLIkig~~ap  224 (458)
T KOG1266|consen  145 PRVIFITEYMSSGSLKQFLKRTKKNQKALFQKAWKKWCTQILSALSYLHSCDPPIIHGNLTCDTIFIQHNGLIKIGSVAP  224 (458)
T ss_pred             cceEEEEecccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhhhhhhccCCccccCCcchhheeecCCceEEecccCc
Confidence            455679999999999999974    3345666778899999999999996  455677    778888888888753211


Q ss_pred             ceecCCC--------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcc-cCCCCCCCCCCcHHHHHHHHH
Q 045353          141 ACWTHKQ--------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL-FDPHSGDNYDKDEDHLALMME  211 (358)
Q Consensus       141 a~~~~~~--------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~p-f~~~~~~~~~~~~~~l~~i~~  211 (358)
                      .. .+..        .....+-++|.+||.=.....+.++|||++|....+|..+..- -.+.+.  .. .+..++..  
T Consensus       225 ~s-~h~s~~~~~~~Ek~~~~~~~g~~a~~sg~~tn~~~a~dIy~fgmcAlemailEiq~tnseS~--~~-~ee~ia~~--  298 (458)
T KOG1266|consen  225 DS-THPSVNSTREAEKSVNTSLPGFSAPESGTTTNTTGASDIYKFGMCALEMAILEIQSTNSESK--VE-VEENIANV--  298 (458)
T ss_pred             cc-cchhhhhhhHhhhhccccCCccccCCcCcccccccchhhhhhhHHHHHHHHheeccCCCcce--ee-hhhhhhhh--
Confidence            11 1100        1122456789999875555567889999999999998876532 111110  00 00000000  


Q ss_pred             HhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          212 LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       212 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                      ++|                                           ..   ..--++++.+||+-.|..||+|..++.||
T Consensus       299 i~~-------------------------------------------le---n~lqr~~i~kcl~~eP~~rp~ar~llfHp  332 (458)
T KOG1266|consen  299 IIG-------------------------------------------LE---NGLQRGSITKCLEGEPNGRPDARLLLFHP  332 (458)
T ss_pred             eee-------------------------------------------cc---CccccCcCcccccCCCCCCcchhhhhcCc
Confidence            000                                           00   01124789999999999999999999999


Q ss_pred             CcC
Q 045353          292 WMS  294 (358)
Q Consensus       292 wf~  294 (358)
                      ..-
T Consensus       333 llf  335 (458)
T KOG1266|consen  333 LLF  335 (458)
T ss_pred             eee
Confidence            754

>KOG0601 consensus Cyclin-dependent kinase WEE1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.50  E-value=1.8e-07  Score=88.57  Aligned_cols=175  Identities=17%  Similarity=0.045  Sum_probs=127.6

Q ss_pred             CCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceec
Q 045353           70 SPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWT  144 (358)
Q Consensus        70 ~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~  144 (358)
                      ....||-.|||+|+++...+...-.+.+........+++.++.++|....+|.    .||++.++ +..++.|||....+
T Consensus       338 ~r~~~ip~e~~~~~s~~l~~~~~~~~d~~~~~~~~~q~~~~l~~i~s~~~~~~d~~psni~i~~~~~~~~~~~~~~~t~~  417 (524)
T KOG0601|consen  338 LRQGYIPLEFCEGGSSSLRSVTSQMLDEDPRLRLTAQILTALNVIHSKLFVHLDVKPSNILISNDGFFSKLGDFGCWTRL  417 (524)
T ss_pred             cccccCchhhhcCcchhhhhHHHHhcCcchhhhhHHHHHhccccccchhhhcccccccceeeccchhhhhcccccccccc
Confidence            45667999999999999888666678889999999999999999999998887    99999887 78899999988543


Q ss_pred             CCCCCCCcc-CCCc-chhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          145 HKQFTNDIQ-TRQY-RCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       145 ~~~~~~~~g-t~~Y-~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                      .-....... +..| .++..+....+..++|++|||..+.+.+++.+.-.....         +                
T Consensus       418 ~~~~~~~~~~~r~~p~~~~~~e~~~~~~~~~~~sl~~~~~e~~~~~~ls~~~~~---------~----------------  472 (524)
T KOG0601|consen  418 AFSSGVFHHIDRLYPIAEILLEDYPHLSKADIFSLGLSVDEAITGSPLSESGVQ---------S----------------  472 (524)
T ss_pred             ceecccccccccccccchhhccccccccccccccccccccccccCcccCccccc---------c----------------
Confidence            222122223 3344 355555556689999999999999999998654321110         0                


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                                ..+..+.....+.....+..+...++..|+..|+.+.++..|.-|..
T Consensus       473 --------------------------~~i~~~~~p~~~~~~~~~q~~~kv~~~~~~~~~~l~~~l~~~~~~~~  519 (524)
T KOG0601|consen  473 --------------------------LTIRSGDTPNLPGLKLQLQVLLKVMINPDRKRRPSAVELSLHSEFYR  519 (524)
T ss_pred             --------------------------eeeecccccCCCchHHhhhhhhhhhcCCccccchhhhhhcccchhhh
Confidence                                      00001112222333467788999999999999999999998887653

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=98.49  E-value=8.8e-08  Score=94.02  Aligned_cols=65  Identities=15%  Similarity=0.207  Sum_probs=56.1

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT  144 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~  144 (358)
                      ...++||||++|++|.+++.        ....++.++..++.++|+.+++|+    +|||+ .++.++|+|||+|+..
T Consensus       409 ~~~~lv~E~~~g~~L~~~l~--------~~~~~~~~i~~~L~~lH~~giiHrDlkp~NILl-~~~~~~liDFGla~~~  477 (535)
T PRK09605        409 EEKTIVMEYIGGKDLKDVLE--------GNPELVRKVGEIVAKLHKAGIVHGDLTTSNFIV-RDDRLYLIDFGLGKYS  477 (535)
T ss_pred             CCCEEEEEecCCCcHHHHHH--------HHHHHHHHHHHHHHHHHhCCCccCCCChHHEEE-ECCcEEEEeCcccccC
Confidence            45689999999999998775        346678889999999999999988    99999 6789999999998654

>PRK04750 ubiB putative ubiquinone biosynthesis protein UbiB; Reviewed

Probab=98.46  E-value=1.8e-07  Score=90.47  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=58.4

Q ss_pred             CCCCCCcccccCCCCCccccc--cccc----ccChhhhhHHHHhhhhccccccCCCCCCcccccccCCC----cEEEEec
Q 045353           69 SSPDNFSVDTIPNGVSVEERQ--NDSV----VNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDV----QCKLVDF  138 (358)
Q Consensus        69 ~~~~~~iv~e~~~gg~L~~~~--~~~~----~~~~~~~~~~l~~~~~~~~~~h~~~~~hr~NILl~~~~----~vkL~DF  138 (358)
                      -++..++||||+.|+.+.++.  ...+    .+.+..+..++.|++....+|.|   .||.||+++.++    .++++||
T Consensus       232 ~st~~VLvmE~i~G~~l~d~~~l~~~g~d~~~la~~~v~~~~~Qif~~GffHaD---pHPGNIlv~~~g~~~~~i~llDF  308 (537)
T PRK04750        232 YCSETVMVMERMYGIPVSDVAALRAAGTDMKLLAERGVEVFFTQVFRDGFFHAD---MHPGNIFVSYDPPENPRYIALDF  308 (537)
T ss_pred             cCCCceEEEeeecCccHHhHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCeeeCC---CChHHeEEecCCCCCCeEEEEec
Confidence            356778999999999998742  2222    24455677888999988888888   566799999988    9999999


Q ss_pred             CCceecCC
Q 045353          139 GNACWTHK  146 (358)
Q Consensus       139 G~a~~~~~  146 (358)
                      |++...+.
T Consensus       309 Givg~l~~  316 (537)
T PRK04750        309 GIVGSLNK  316 (537)
T ss_pred             ceEEECCH
Confidence            99976543

>TIGR01982 UbiB 2-polyprenylphenol 6-hydroxylase

Probab=98.46  E-value=1.8e-07  Score=89.04  Aligned_cols=73  Identities=11%  Similarity=0.043  Sum_probs=50.6

Q ss_pred             CCCCCcccccCCCCCcccccccc--cc----cChhhhhHHHHhhhhccccccCCCCCCcccccccCCCcEEEEecCCcee
Q 045353           70 SPDNFSVDTIPNGVSVEERQNDS--VV----NNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus        70 ~~~~~iv~e~~~gg~L~~~~~~~--~~----~~~~~~~~~l~~~~~~~~~~h~~~~~hr~NILl~~~~~vkL~DFG~a~~  143 (358)
                      ++..++||||++|++|.++....  ..    +...-+..++.+++....+|.|   .|+.||+++.++.++|+|||++..
T Consensus       230 ~~~~vLvmE~i~G~~L~~~~~~~~~~~~~~~ia~~~~~~~l~ql~~~g~~H~D---~hPgNilv~~~g~i~liDfG~~~~  306 (437)
T TIGR01982       230 TSERVLTMEWIDGIPLSDIAALDEAGLDRKALAENLARSFLNQVLRDGFFHAD---LHPGNIFVLKDGKIIALDFGIVGR  306 (437)
T ss_pred             cCCceEEEEeECCcccccHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCceeCC---CCcccEEECCCCcEEEEeCCCeeE
Confidence            45678999999999999875421  11    1111223345666665555655   355799999999999999999866


Q ss_pred             cC
Q 045353          144 TH  145 (358)
Q Consensus       144 ~~  145 (358)
                      ..
T Consensus       307 l~  308 (437)
T TIGR01982       307 LS  308 (437)
T ss_pred             CC
Confidence            54

This model represents the enzyme (UbiB) which catalyzes the first hydroxylation step in the ubiquinone biosynthetic pathway in bacteria. It is believed that the reaction is 2-polyprenylphenol - 6-hydroxy-2-polyprenylphenol. This model finds hits primarily in the proteobacteria. The gene is also known as AarF in certain species.

>cd05119 RIO RIO kinase family, catalytic domain

Probab=98.45  E-value=2e-07  Score=78.39  Aligned_cols=72  Identities=13%  Similarity=0.060  Sum_probs=55.4

Q ss_pred             CCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           72 DNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        72 ~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      ..++||||++|+.+....-..... ..++..++.+++.++.++|. .+++|+    +||+++ ++.++|+|||.|....
T Consensus        89 ~~~lv~e~~~g~~~~~~~l~~~~~-~~~~~~~~~~~~~~l~~lh~~~~ivH~Dl~p~Nili~-~~~~~liDfg~a~~~~  165 (187)
T cd05119          89 RHVLVMEFIGGDGIPAPRLKDVRL-LEDPEELYDQILELMRKLYREAGLVHGDLSEYNILVD-DGKVYIIDVPQAVEID  165 (187)
T ss_pred             CCEEEEEEeCCCCccChhhhhhhh-cccHHHHHHHHHHHHHHHhhccCcCcCCCChhhEEEE-CCcEEEEECccccccc
Confidence            468999999996543221111111 16678889999999999999 999988    999999 8999999999985443

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases present in archaea, bacteria and eukaryotes. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. RIO kinases contain a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. Most organisms contain at least two RIO kinases, RIO1 and RIO2. A third protein, RIO3, is present in multicellular eukaryotes. In yeast, RIO1 and RIO2 are essential for survival. They funct

>cd05120 APH_ChoK_like Aminoglycoside 3'-phosphotransferase (APH) and Choline Kinase (ChoK) family

Probab=98.26  E-value=1.3e-06  Score=70.04  Aligned_cols=111  Identities=9%  Similarity=0.011  Sum_probs=69.1

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRD  101 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~  101 (358)
                      +..+++|.......   ...+.++......+......+........ ..+..|++|||+.|+++..+       ......
T Consensus        21 ~~~~~iK~~~~~~~---~~~~~~e~~~~~~l~~~~~~~p~~~~~~~-~~~~~~~v~e~~~g~~~~~~-------~~~~~~   89 (155)
T cd05120          21 DEDYVLKINPSREK---GADREREVAILQLLARKGLPVPKVLASGE-SDGWSYLLMEWIEGETLDEV-------SEEEKE   89 (155)
T ss_pred             CCeEEEEecCCCCc---hhHHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCccEEEEEecCCeecccC-------CHHHHH
Confidence            35677787766554   33444444443333211122222222222 12678999999999998865       334445


Q ss_pred             HHHHhhhhccccccCC---CCCCc----ccccccCCCcEEEEecCCcee
Q 045353          102 NEVKNTSQGVKGHRRP---SRATR----KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~---~~~hr----~NILl~~~~~vkL~DFG~a~~  143 (358)
                      .++.++...+..+|..   +++|+    .|||++..+.++++|||.+..
T Consensus        90 ~~~~~~~~~l~~lh~~~~~~i~H~Dl~~~Nil~~~~~~~~l~Df~~~~~  138 (155)
T cd05120          90 DIAEQLAELLAKLHQLPLLVLCHGDLHPGNILVDDGKILGIIDWEYAGY  138 (155)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEecCCCcceEEEECCcEEEEEecccccC
Confidence            5566666666666663   46665    899999989999999998854

The APH/ChoK family is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). The family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides and macrolides, leads to their inactivation and to bacterial antibiotic resistance. Phosphorylation of choline, ethanolamine, and homoserine serves

>cd05146 RIO3_euk RIO kinase family; eukaryotic RIO3, catalytic domain

Probab=98.14  E-value=3.1e-06  Score=71.22  Aligned_cols=74  Identities=12%  Similarity=0.032  Sum_probs=55.0

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccc-cCCCCCCc----ccccccCCCcEEEEecCCceecC
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGH-RRPSRATR----KNLLAAVDVQCKLVDFGNACWTH  145 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~  145 (358)
                      ...+|||||+.|+.+..-..........+...++.+++..+..+ |..+++|.    .|||+. ++.+.|+|||.|...+
T Consensus        97 ~~~~lvME~Ig~~~~~~~~Lkd~~~~~~~~~~i~~~i~~~l~~l~H~~glVHGDLs~~NIL~~-~~~v~iIDF~qav~~~  175 (197)
T cd05146          97 KKHVLVMSFIGDDQVPAPKLKDAKLNDEEMKNAYYQVLSMMKQLYKECNLVHADLSEYNMLWH-DGKVWFIDVSQSVEPT  175 (197)
T ss_pred             cCCEEEEEEcCCCCccchhhhccccCHHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEE-CCcEEEEECCCceeCC
Confidence            56789999999875543222223344455667788888888877 88999998    899997 4789999999886543

The RIO kinase catalytic domain family is part of a larger superfamily, that includes the catalytic domains of other kinases such as the typical serine/threonine/tyrosine protein kinases (PKs), aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase (PI3K). RIO kinases are atypical protein serine kinases containing a kinase catalytic signature, but otherwise show very little sequence similarity to typical PKs. Serine kinases catalyze the transfer of the gamma-phosphoryl group from ATP to serine residues in protein substrates. The RIO catalytic domain is truncated compared to the catalytic domains of typical PKs, with deletions of the loops responsible for substrate binding. RIO3 is present only in multicellular eukaryotes. Its function is still unknown.

>COG3642 Mn2+-dependent serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.10  E-value=2.9e-06  Score=69.48  Aligned_cols=66  Identities=12%  Similarity=0.208  Sum_probs=52.5

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT  144 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~  144 (358)
                      ....|+|||++|-.|.+.++..       ...++..+-.-+..+|..|++|-    +||++.++. +.++|||++.+.
T Consensus        72 ~~~~I~me~I~G~~lkd~l~~~-------~~~~~r~vG~~vg~lH~~givHGDLTtsNiIl~~~~-i~~IDfGLg~~s  141 (204)
T COG3642          72 DNGLIVMEYIEGELLKDALEEA-------RPDLLREVGRLVGKLHKAGIVHGDLTTSNIILSGGR-IYFIDFGLGEFS  141 (204)
T ss_pred             CCCEEEEEEeCChhHHHHHHhc-------chHHHHHHHHHHHHHHhcCeecCCCccceEEEeCCc-EEEEECCccccc
Confidence            4457999999999999988875       24566666677777888888877    899998765 999999998643

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=97.97  E-value=2.7e-05  Score=75.17  Aligned_cols=137  Identities=11%  Similarity=0.034  Sum_probs=91.4

Q ss_pred             HhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhcccccc-CCCC
Q 045353           41 KVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHR-RPSR  119 (358)
Q Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h-~~~~  119 (358)
                      ..++..|+...  .-|+.|....+... .++.+|||+|-+.--.  ..+..   ........++.||+.++.++| +.+.
T Consensus        55 ~~~~A~k~lKt--lRHP~Il~yL~t~e-~~~~~ylvTErV~Pl~--~~lk~---l~~~~v~~Gl~qIl~AL~FL~~d~~l  126 (690)
T KOG1243|consen   55 LAKRAVKRLKT--LRHPNILSYLDTTE-EEGTLYLVTERVRPLE--TVLKE---LGKEEVCLGLFQILAALSFLNDDCNL  126 (690)
T ss_pred             HHHHHHHHhhh--ccCchhhhhhhhhc-ccCceEEEeeccccHH--HHHHH---hHHHHHHHHHHHHHHHHHHHhccCCe
Confidence            34444455554  34565555444333 3558999999765433  22222   226778899999999999997 5666


Q ss_pred             CCc----ccccccCCCcEEEEecCCceecCCCC---CCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcC
Q 045353          120 ATR----KNLLAAVDVQCKLVDFGNACWTHKQF---TNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG  187 (358)
Q Consensus       120 ~hr----~NILl~~~~~vkL~DFG~a~~~~~~~---~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g  187 (358)
                      +|-    +-|+++..|..||++|-++....+..   ....---.|..|+.+....  ...|.|-|||++++++.|
T Consensus       127 vHgNv~~~SVfVn~~GeWkLggle~v~~~~~~~~~~~~~~~~~s~~~P~~~~~s~--~s~D~~~Lg~li~el~ng  199 (690)
T KOG1243|consen  127 VHGNVCKDSVFVNESGEWKLGGLELVSKASGFNAPAKSLYLIESFDDPEEIDPSE--WSIDSWGLGCLIEELFNG  199 (690)
T ss_pred             eeccEeeeeEEEcCCCcEEEeeeEEEeccccCCcccccchhhhcccChhhcCccc--cchhhhhHHHHHHHHhCc
Confidence            677    77999999999999998875443221   1111222466676654333  457999999999999999

>cd05151 ChoK Choline Kinase (ChoK)

Probab=97.84  E-value=1.6e-05  Score=65.49  Aligned_cols=62  Identities=15%  Similarity=0.155  Sum_probs=42.7

Q ss_pred             CCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCC-----CCc----ccccccCCCcEEEEecCCce
Q 045353           72 DNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSR-----ATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        72 ~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~-----~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      ..++||||++|.++.+..        ......+.++...+..+|..++     +|.    .|||++ ++.++|+|||.|.
T Consensus        65 ~~~lv~e~i~G~~l~~~~--------~~~~~~~~~l~~~l~~LH~~~~~~~~~~HgD~~~~Nil~~-~~~~~liDf~~a~  135 (170)
T cd05151          65 TGVLITEFIEGSELLTED--------FSDPENLEKIAKLLKKLHSSPLPDLVPCHNDLLPGNFLLD-DGRLWLIDWEYAG  135 (170)
T ss_pred             CCeEEEEecCCCcccccc--------ccCHHHHHHHHHHHHHHhCCCCCCceeecCCCCcCcEEEE-CCeEEEEeccccc
Confidence            358999999999987641        1112334555555555665553     555    799999 6789999999874

The ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). It is composed of bacterial and eukaryotic choline kinases, as well as eukaryotic ethanolamine kinase. ChoK catalyzes the transfer of the gamma-phosphoryl group from ATP (or CTP) to its substrate, choline, producing phosphorylcholine (PCho), a precursor to the biosynthesis of two major membrane phospholipids, phosphatidylcholine (PC), and sphingomyelin (SM). Although choline is the preferred substrate, ChoK also shows substantial activity towards ethanolamine and its N-methylated derivatives. Bacterial ChoK is also referred to as licA protein. ETNK catalyzes the transfer of the gamma-phosphoryl group from CTP to ethanolamine (Etn), the first step in the CDP-Etn pathway for the formation of the major ph

>KOG3087 consensus Serine/threonine protein kinase [General function prediction only]

Probab=97.76  E-value=2.1e-05  Score=64.36  Aligned_cols=72  Identities=14%  Similarity=0.105  Sum_probs=54.0

Q ss_pred             CCCcccccCCC-CCcccccccccc-cChh-hhhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCc
Q 045353           72 DNFSVDTIPNG-VSVEERQNDSVV-NNES-SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNA  141 (358)
Q Consensus        72 ~~~iv~e~~~g-g~L~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a  141 (358)
                      ...|+|||++| .++.+++..... -.+. ..+..++.+-+.+..+|+.++||-    +|||+.+++   .+.|+|||++
T Consensus        84 ~~~i~ME~~~g~~~vk~~i~~~~~~~~~d~~~~~~~~~iG~~igklH~ndiiHGDLTTSNill~~~~~~~~~~lIdfgls  163 (229)
T KOG3087|consen   84 GGQIYMEFIDGASTVKDFILSTMEDESEDEGLAELARRIGELIGKLHDNDIIHGDLTTSNILLRSDGNQITPILIDFGLS  163 (229)
T ss_pred             CCeEEEEeccchhHHHHHHHHHccCcccchhHHHHHHHHHHHHHHhhhCCeecccccccceEEecCCCcCceEEEeecch
Confidence            44689999999 567777764332 2222 236788888899999999999998    999997664   3489999998


Q ss_pred             ee
Q 045353          142 CW  143 (358)
Q Consensus       142 ~~  143 (358)
                      ..
T Consensus       164 ~~  165 (229)
T KOG3087|consen  164 SV  165 (229)
T ss_pred             hc
Confidence            54

>PRK15123 lipopolysaccharide core heptose(I) kinase RfaP; Provisional

Probab=97.64  E-value=7.2e-05  Score=66.44  Aligned_cols=72  Identities=15%  Similarity=0.173  Sum_probs=55.8

Q ss_pred             CCCCcccccCCCC-Cccccccc--ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-------CCcEEEE
Q 045353           71 PDNFSVDTIPNGV-SVEERQND--SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-------DVQCKLV  136 (358)
Q Consensus        71 ~~~~iv~e~~~gg-~L~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-------~~~vkL~  136 (358)
                      ...|+|||+++|- +|.+++..  ...........++.++...+.-+|+.|++|+    .|||++.       ++.+.|+
T Consensus       108 ~~s~LVte~l~~~~sL~~~~~~~~~~~~~~~~~~~ll~~la~~i~~LH~~Gi~HgDL~~~NiLl~~~~~~~~~~~~~~LI  187 (268)
T PRK15123        108 RTSFIITEDLAPTISLEDYCADWATNPPDPRLKRMLIKRVATMVRDMHAAGINHRDCYICHFLLHLPFPGREEDLKLSVI  187 (268)
T ss_pred             ceeEEEEeeCCCCccHHHHHHhhcccCCCHHHHHHHHHHHHHHHHHHHHCcCccCCCChhhEEEeccccCCCCCceEEEE
Confidence            4568999999997 78887642  2223345566778888888888888888888    8999975       4689999


Q ss_pred             ecCCce
Q 045353          137 DFGNAC  142 (358)
Q Consensus       137 DFG~a~  142 (358)
                      ||+.+.
T Consensus       188 Dl~r~~  193 (268)
T PRK15123        188 DLHRAQ  193 (268)
T ss_pred             ECCccc
Confidence            999874

>COG4248 Uncharacterized protein with protein kinase and helix-hairpin-helix DNA-binding domains [General function prediction only]

Probab=97.64  E-value=0.00015  Score=66.75  Aligned_cols=123  Identities=12%  Similarity=0.052  Sum_probs=78.0

Q ss_pred             CCcccccCCCCCccc-ccc------cccccChhhhhHHHHhhhhccccccC----CCCCCcccccccCCCcEEEEecCCc
Q 045353           73 NFSVDTIPNGVSVEE-RQN------DSVVNNESSRDNEVKNTSQGVKGHRR----PSRATRKNLLAAVDVQCKLVDFGNA  141 (358)
Q Consensus        73 ~~iv~e~~~gg~L~~-~~~------~~~~~~~~~~~~~l~~~~~~~~~~h~----~~~~hr~NILl~~~~~vkL~DFG~a  141 (358)
                      +-++|..+.|-.--. +..      +.....+......-+.+..+-..+|.    .|-+..+|+|+.+++.|.|.|=..-
T Consensus        85 iGflmP~v~g~~pI~~~y~p~tRRqs~P~~~w~fllrvaRnlA~aFA~lH~~Gh~vGDVn~~~~lVsd~~~V~LVdsDsf  164 (637)
T COG4248          85 IGFLMPKVSGKEPIHMIYSPATRRQSYPHCAWDFLLRVARNLASAFATLHEHGHVVGDVNQNSFLVSDDSKVVLVDSDSF  164 (637)
T ss_pred             eEEecccCCCccchhhhcCchhhcccCCccccHHHHHHHHHHHHHHHHHHhcCCcccccCccceeeecCceEEEEcccce
Confidence            456677766653222 111      11123334444444444444444443    3444568999999999999985433


Q ss_pred             eec--CCCCCCCccCCCcchhHHHh-----CCCCCcchhhhhhhHHHHhhhcC-CcccCCCC
Q 045353          142 CWT--HKQFTNDIQTRQYRCPEVLL-----GSKYSTSADLWSFACICFELATG-DVLFDPHS  195 (358)
Q Consensus       142 ~~~--~~~~~~~~gt~~Y~aPE~l~-----~~~~~~~~DiwSlGvil~ell~g-~~pf~~~~  195 (358)
                      ...  +......+|.+.|.+||.-.     |..-+...|.|.||+++|+++.| ++||.|-.
T Consensus       165 qi~~ng~~~~cpVg~~eftPPElQ~~~sf~g~~r~~~hD~FGLavLiF~lL~ggrHPysGI~  226 (637)
T COG4248         165 QINANGTLHLCPVGVSEFTPPELQTLPSFVGFERTANHDNFGLAVLIFHLLFGGRHPYSGIP  226 (637)
T ss_pred             eeccCCceEecccCccccCCHHHhccccccccCCCccccchhHHHHHHHHHhcCCCCCCccc
Confidence            222  22244558999999999865     33357779999999999999886 99997653

>COG0661 AarF Predicted unusual protein kinase [General function prediction only]

Probab=97.54  E-value=0.00014  Score=70.10  Aligned_cols=130  Identities=12%  Similarity=0.030  Sum_probs=85.6

Q ss_pred             ccccccccCcccccccccCccchhhhHHh---------------------------------------hHHHHHhhhh--
Q 045353           14 TDKVVTESSASKENKSLYGDLTKNQKKKV---------------------------------------KKKAKKAAQG--   52 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~~~~~~~~~--   52 (358)
                      |=+.+..+|..||+|+++.+..+.=+..+                                       ++|++-+.+.  
T Consensus       141 VH~A~L~sG~~VAVKVqrPgi~~~i~~DL~il~~~a~~~~~~~~~~~~l~~~~vv~e~~~~l~~ElDy~~EA~n~~~~~~  220 (517)
T COG0661         141 VHRAVLKSGEEVAVKVQRPGIRERIEADLKLLRRLARLIKRLPPGGRRLDLVEVVDEFEKRLREELDYRREAANAERFRE  220 (517)
T ss_pred             heeEEecCCCEEEEEecCCChHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            34556778999999999997766543332                                       2233222211  


Q ss_pred             ccCCCccccccCCCCCCCCCCCcccccCCCCCccccc--ccccc----cChhhhhHHHHhhhhccccccCCCCCCccccc
Q 045353           53 CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQ--NDSVV----NNESSRDNEVKNTSQGVKGHRRPSRATRKNLL  126 (358)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~--~~~~~----~~~~~~~~~l~~~~~~~~~~h~~~~~hr~NIL  126 (358)
                      .+.....+.+-...-.-++.-.++|||++|-.+.+..  ...+.    +...-...++.|+....-+|-|   .|+.||+
T Consensus       221 nf~~~~~v~VP~V~we~t~~~VLtmE~i~Gi~i~d~~~l~~~g~d~k~ia~~~~~~f~~q~~~dgffHaD---pHpGNi~  297 (517)
T COG0661         221 NFKDDPDVYVPKVYWEYTTRRVLTMEWIDGIKISDIAALKSAGIDRKELAELLVRAFLRQLLRDGFFHAD---PHPGNIL  297 (517)
T ss_pred             HcCCCCCeEeceeehhccCCcEEEEEeeCCEecccHHHHHhcCCCHHHHHHHHHHHHHHHHHhcCccccC---CCccceE
Confidence            1233333333333333456778999999999999974  33222    2334556677888887777777   5777999


Q ss_pred             ccCCCcEEEEecCCceecCC
Q 045353          127 AAVDVQCKLVDFGNACWTHK  146 (358)
Q Consensus       127 l~~~~~vkL~DFG~a~~~~~  146 (358)
                      ++.+|.+.+.|||+....+.
T Consensus       298 v~~~g~i~~lDfGi~g~l~~  317 (517)
T COG0661         298 VRSDGRIVLLDFGIVGRLDP  317 (517)
T ss_pred             EecCCcEEEEcCcceecCCH
Confidence            99999999999999865543

>PF06293 Kdo: Lipopolysaccharide kinase (Kdo/WaaP) family; InterPro: IPR010440 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.50  E-value=9.9e-05  Score=63.11  Aligned_cols=73  Identities=11%  Similarity=0.122  Sum_probs=59.3

Q ss_pred             CCCCcccccCCCC-CcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCce
Q 045353           71 PDNFSVDTIPNGV-SVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNAC  142 (358)
Q Consensus        71 ~~~~iv~e~~~gg-~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a~  142 (358)
                      ...++|||+++|- +|.+++......+......++.++...+.-+|+.|++|.    .|||++.+.   .+.|+||+.++
T Consensus        90 ~~s~lite~l~~~~~L~~~~~~~~~~~~~~~~~ll~~l~~~i~~lH~~gi~H~Dl~~~NILv~~~~~~~~~~lIDld~~~  169 (206)
T PF06293_consen   90 YRSYLITEALPGAQDLRDLLQQWEQLDPSQRRELLRALARLIAKLHDAGIYHGDLNPSNILVDPDDGQYRFYLIDLDRMR  169 (206)
T ss_pred             eeEEEEEEeCCCcccHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHCcCCCCCCCcccEEEeCCCCceeEEEEcchhce
Confidence            4568999999985 788888764445666677888888888888888888887    899999887   89999999875


Q ss_pred             e
Q 045353          143 W  143 (358)
Q Consensus       143 ~  143 (358)
                      .
T Consensus       170 ~  170 (206)
T PF06293_consen  170 F  170 (206)
T ss_pred             e
Confidence            4

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents lipopolysaccharide kinases which are related to protein kinases IPR000719 from INTERPRO. This family includes waaP (rfaP) gene product is required for the addition of phosphate to O-4 of the first heptose residue of the lipopolysaccharide (LPS) inner core region. It has previously been shown that WaaP is necessary for resistance to hydrophobic and polycationic antimicrobials in E. coli and that it is required for virulence in invasive strains of Salmonella enterica [].; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0009103 lipopolysaccharide biosynthetic process, 0016020 membrane

>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis]

Probab=97.45  E-value=0.00088  Score=68.97  Aligned_cols=169  Identities=17%  Similarity=0.144  Sum_probs=119.8

Q ss_pred             CCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc-------ccccccCCCcEEEE--ecCCce
Q 045353           72 DNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR-------KNLLAAVDVQCKLV--DFGNAC  142 (358)
Q Consensus        72 ~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr-------~NILl~~~~~vkL~--DFG~a~  142 (358)
                      .+.+..|||.+-++...+..-........+.+..++..|+.++|+....|.       .+-..+..+.+.++  ||+.+.
T Consensus       260 ~~~v~~~~~s~~~~~~~~q~v~~i~~~~~r~~~~~~~~GL~~~h~~~l~~v~L~~s~~~~~~~~~e~~~~~sl~~~~ss~  339 (1351)
T KOG1035|consen  260 VLDVLQEICSKVELRSLLQSVGSIPLETLRILHQKLLEGLAYLHSLSLEHVVLSASSSKESTVDGEGVVAISLSDFDSSK  339 (1351)
T ss_pred             HHHHHHhhcCccchHHHHhhccccCHHHHHHHHHHHhhhHHHHHHhccceeEEecccccccccCccceeecchhhhcccc
Confidence            455778999999999999888888888899999999999999999866533       13333445666666  888776


Q ss_pred             ecCCC--CCCCccCCCcchhHHHhCCCCCcc--hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCch
Q 045353          143 WTHKQ--FTNDIQTRQYRCPEVLLGSKYSTS--ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR  218 (358)
Q Consensus       143 ~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~--~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~  218 (358)
                      .....  ......+..|-++|.+....+..+  .|+|.+|..+..+..|..+-.-.            +.+..++     
T Consensus       340 ~l~d~~~~~~~~~~~~~~~~e~~~~~~~~~~r~~dL~~lgll~~~~~~~~~i~~~~------------~~~~~~l-----  402 (1351)
T KOG1035|consen  340 PLPDNEKSFSDLLAEIRNADEDLKENTAKKSRLTDLWCLGLLLLQLSQGEDISEKS------------AVPVSLL-----  402 (1351)
T ss_pred             cCCCcccchhhcCccccccccccccccchhhhhhHHHHHHHHHhhhhhcCcccccc------------cchhhhh-----
Confidence            55432  222345667888888877666554  79999999999998875432100            0000000     


Q ss_pred             hhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          219 KIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                                              +........+++.+|+.-++++|+++.+++.|+|.+...
T Consensus       403 ----------------------------------------~~~~~~~~~d~~~~~~~~~~~~Rl~~~~ll~~~f~~~~~  441 (1351)
T KOG1035|consen  403 ----------------------------------------DVLSTSELLDALPKCLDEDSEERLSALELLTHPFLRFPT  441 (1351)
T ss_pred             ----------------------------------------ccccchhhhhhhhhhcchhhhhccchhhhhhchhccccc
Confidence                                                    000111566889999999999999999999999998653

>PF01163 RIO1: RIO1 family; InterPro: IPR018934 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.38  E-value=0.0001  Score=61.78  Aligned_cols=72  Identities=14%  Similarity=0.181  Sum_probs=44.9

Q ss_pred             CCCCcccccCC--CCCcccccccccccChhhhhHHHHhhhhcccc-ccCCCCCCc----ccccccCCCcEEEEecCCcee
Q 045353           71 PDNFSVDTIPN--GVSVEERQNDSVVNNESSRDNEVKNTSQGVKG-HRRPSRATR----KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus        71 ~~~~iv~e~~~--gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~  143 (358)
                      ....|||||++  |..+..+.....  .......++.+++..+.. +|..|++|-    .|||++++ .+.|+|||.|..
T Consensus        79 ~~~~ivME~I~~~G~~~~~l~~~~~--~~~~~~~~~~~il~~~~~~~~~~givHGDLs~~NIlv~~~-~~~iIDf~qav~  155 (188)
T PF01163_consen   79 NRNVIVMEYIGEDGVPLPRLKDVDL--SPEEPKELLEEILEEIIKMLHKAGIVHGDLSEYNILVDDG-KVYIIDFGQAVD  155 (188)
T ss_dssp             ETTEEEEE--EETTEEGGCHHHCGG--GGSTHHHHHHHHHHHHHHHHHCTTEEESS-STTSEEEETT-CEEE--GTTEEE
T ss_pred             eCCEEEEEecCCCccchhhHHhccc--cchhHHHHHHHHHHHHHHHHHhcCceecCCChhhEEeecc-eEEEEecCccee
Confidence            35679999999  666655443321  134455566666664333 467777766    79999987 899999998865


Q ss_pred             cC
Q 045353          144 TH  145 (358)
Q Consensus       144 ~~  145 (358)
                      ..
T Consensus       156 ~~  157 (188)
T PF01163_consen  156 SS  157 (188)
T ss_dssp             TT
T ss_pred             cC
Confidence            44

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents RIO kinase, they exhibit little sequence similarity with eukaryotic protein kinases, and are classified as atypical protein kinases []. The conformation of ATP when bound to the RIO kinases is unique when compared with ePKs, such as serine/threonine kinases or the insulin receptor tyrosine kinase, suggesting that the detailed mechanism by which the catalytic aspartate of RIO kinases participates in phosphoryl transfer may not be identical to that employed in known serine/threonine ePKs. Representatives of the RIO family are present in organisms varying from Archaea to humans, although the RIO3 proteins have only been identified in multicellular eukaryotes, to date. Yeast Rio1 and Rio2 proteins are required for proper cell cycle progression and chromosome maintenance, and are necessary for survival of the cells. These proteins are involved in the processing of 20 S pre-rRNA via late 18 S rRNA processing. ; GO: 0003824 catalytic activity, 0005524 ATP binding; PDB: 1TQP_A 1ZAR_A 1TQI_A 1ZAO_A 1TQM_A 3RE4_A 1ZTH_B 1ZP9_A 1ZTF_A.

>PF06176 WaaY: Lipopolysaccharide core biosynthesis protein (WaaY); InterPro: IPR009330 This family consists of several bacterial lipopolysaccharide core biosynthesis proteins (WaaY or RfaY)

Probab=97.23  E-value=0.00022  Score=60.70  Aligned_cols=67  Identities=10%  Similarity=0.067  Sum_probs=49.5

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCcccccccCCCcEEEEecCCce
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr~NILl~~~~~vkL~DFG~a~  142 (358)
                      ...++||||++|-+|.+...-.. .....+...+.++|...-+|.|   .||.|+++++++ ++++||+..+
T Consensus       116 ~~~~ll~EYIeG~~l~d~~~i~e-~~~~ki~~~ikqlH~~G~~HGD---~hpgNFlv~~~~-i~iID~~~k~  182 (229)
T PF06176_consen  116 SSYVLLMEYIEGVELNDIEDIDE-DLAEKIVEAIKQLHKHGFYHGD---PHPGNFLVSNNG-IRIIDTQGKR  182 (229)
T ss_pred             eEEEEEEEEecCeecccchhcCH-HHHHHHHHHHHHHHHcCCccCC---CCcCcEEEECCc-EEEEECcccc
Confidence            44568999999999987653211 1124567778999998888877   566799998655 9999998654

The waaY, waaQ, and waaP genes are located in the central operon of the waa (formerly rfa) locus on the chromosome of Escherichia coli. This locus contains genes whose products are involved in the assembly of the core region of the lipopolysaccharide molecule. WaaY is the enzyme that phosphorylates HepII in this system [].; GO: 0009244 lipopolysaccharide core region biosynthetic process

>cd05154 ACAD10_11_like Acyl-CoA dehydrogenase (ACAD) 10 and 11, N-terminal domain, and similar proteins

Probab=97.16  E-value=0.00057  Score=58.71  Aligned_cols=71  Identities=8%  Similarity=-0.069  Sum_probs=37.7

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC--CCCCCCCCcccccCCCCCccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS--KPSSPDNFSVDTIPNGVSVEERQ   89 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~iv~e~~~gg~L~~~~   89 (358)
                      ..+|..+++|.....-.......+.++.+....+...+..+..+....  ....+..|+||||++|.++.+..
T Consensus        19 ~~~g~~~ilK~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~vp~~~~~~~~~~~~~~~~~v~e~i~G~~l~~~~   91 (223)
T cd05154          19 AGGGRRLVLRRPPPGALLPSAHDVAREYRVLRALAGTGVPVPKVLALCEDPSVLGTPFYVMERVDGRVLRDRL   91 (223)
T ss_pred             ecCCcceEEEeCCCcccCcccccHHHHHHHHHHhhCCCCCCCCEEEECCCCCccCCceEEEEEeCCEecCCCC
Confidence            334577888877654432233445555555444332121121111111  11224568999999999988755

This subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of bacterial and eukaryotic proteins with similarity to the N-terminal domains of vertebrate ACAD10 and ACAD11. ACADs are a family of flavoproteins that are involved in the beta-oxidation of fatty acyl-CoA derivatives. ACAD deficiency can cause metabolic disorders including muscle fatigue, hypoglycemia, and hepatic lipidosis, among them. There are at least 11 distinct ACADs, some of which show distinct substrate specificities to either straight-chain or branched-chain fatty acids. ACAD10 is widely expressed in human tissues and is highly expressed in liver, kidney, pancreas, and spleen. ACAD10 and ACAD11 contain

>KOG1235 consensus Predicted unusual protein kinase [General function prediction only]

Probab=97.16  E-value=0.00044  Score=66.72  Aligned_cols=129  Identities=13%  Similarity=0.014  Sum_probs=77.8

Q ss_pred             ccccccccCcccccccccCccchhhhHHh------------------------------------hHHHHHhhhh--ccC
Q 045353           14 TDKVVTESSASKENKSLYGDLTKNQKKKV------------------------------------KKKAKKAAQG--CAG   55 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------------~~~~~~~~~~--~~~   55 (358)
                      +.+..+++|..||+|+..+++.+.-...+                                    .+|++-+...  .+.
T Consensus       177 VhrA~L~~G~~VaVKVQ~P~l~~~~~~Dl~~~~~~~~~l~k~~p~~~~~~lvdE~~~~L~~ELDF~~EA~Nae~~~~~f~  256 (538)
T KOG1235|consen  177 VHRARLKNGEDVAVKVQHPGLEKLIMLDLRNLRLLAKVLQKFFPDFDLVWLVDEIAKSLPQELDFTKEAKNAERFRENFK  256 (538)
T ss_pred             eEEEEecCCCEEEEEecCcChHHHHHHHHHHHHHHHHHHHHhCcCCchhhHHHHHHhhhHhhcchHHHHHhHHHHHHHHH
Confidence            55667888999999999998877743333                                    2233222111  011


Q ss_pred             CCc---cccccCCCCCCCCCCCcccccCCCCCcccccc--cccccChhhhhH-----HHHhhhhccccccCCCCCCcccc
Q 045353           56 TEA---FDESEADSKPSSPDNFSVDTIPNGVSVEERQN--DSVVNNESSRDN-----EVKNTSQGVKGHRRPSRATRKNL  125 (358)
Q Consensus        56 ~~~---~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~--~~~~~~~~~~~~-----~l~~~~~~~~~~h~~~~~hr~NI  125 (358)
                      +-.   .+.+-.+....++.-.++||||+|..+.|+..  +.++ +...+..     +..+|..-.-+|.|   .||.||
T Consensus       257 ~~~~~~~V~VP~Vy~~~st~RVLtME~~~G~~i~Dl~~i~~~gi-~~~~i~~~l~~~~~~qIf~~GffHaD---PHPGNi  332 (538)
T KOG1235|consen  257 DFSLLTYVLVPKVYWDLSTKRVLTMEYVDGIKINDLDAIDKRGI-SPHDILNKLVEAYLEQIFKTGFFHAD---PHPGNI  332 (538)
T ss_pred             hcccccceeCCeehhhcCcceEEEEEecCCccCCCHHHHHHcCC-CHHHHHHHHHHHHHHHHHhcCCccCC---CCCCcE
Confidence            112   22233333344566789999999999998643  3332 2223333     33444444444444   577899


Q ss_pred             cccC----CCcEEEEecCCceecCC
Q 045353          126 LAAV----DVQCKLVDFGNACWTHK  146 (358)
Q Consensus       126 Ll~~----~~~vkL~DFG~a~~~~~  146 (358)
                      ++..    ++.+.+-|||+......
T Consensus       333 lv~~~~~~~~~ivllDhGl~~~is~  357 (538)
T KOG1235|consen  333 LVRPNPEGDEEIVLLDHGLYAVISH  357 (538)
T ss_pred             EEecCCCCCccEEEEcccccccccH
Confidence            9983    67899999999866544

>KOG3741 consensus Poly(A) ribonuclease subunit [RNA processing and modification]

Probab=97.04  E-value=0.0041  Score=58.94  Aligned_cols=151  Identities=13%  Similarity=0.076  Sum_probs=98.7

Q ss_pred             cccCcccccccccCccchhhh--HHhhHHHHHhhhhccCCCccccccCC---CCCCCCCCCcccccCCC-CCccccc---
Q 045353           19 TESSASKENKSLYGDLTKNQK--KKVKKKAKKAAQGCAGTEAFDESEAD---SKPSSPDNFSVDTIPNG-VSVEERQ---   89 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~iv~e~~~g-g~L~~~~---   89 (358)
                      -..|+..|.|++.++-.+..-  ..+...-|   +.|  |.+++-...+   ..-.+..+.+|++|.++ ++|.++.   
T Consensus       298 ~~DG~~YvLkRlhg~r~~~~nk~t~lve~wk---kl~--h~NvV~frevf~t~tF~D~SlvlvYDYyP~s~TL~d~~F~~  372 (655)
T KOG3741|consen  298 NVDGNAYVLKRLHGDRDQSTNKDTSLVEAWK---KLC--HTNVVPFREVFLTYTFGDLSLVLVYDYYPSSPTLYDLYFAN  372 (655)
T ss_pred             ccCCceeeeeeeccccccCcccchHHHHHHH---Hhc--cCceeehhhhhhhhccCcceEEEEEecCCCCchHHHHHccC
Confidence            678999999999775554442  22222222   222  2333333333   33456677788888765 4555522   


Q ss_pred             ------------ccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCcc
Q 045353           90 ------------NDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ  153 (358)
Q Consensus        90 ------------~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~g  153 (358)
                                  .+.....+..+..++.|+..++.++|+.|..-+    .+||++.+..++|...|+........+    
T Consensus       373 ~~~t~~~n~~~~~~~~~~~e~~lW~y~~QLtaaL~sIHssGLAck~L~~~kIlv~G~~RIriS~C~i~Dvl~~d~~----  448 (655)
T KOG3741|consen  373 PPFTKRTNSFYPSQNLKAPEEVLWSYISQLTAALYSIHSSGLACKTLDLKKILVTGKMRIRISGCGIMDVLQEDPT----  448 (655)
T ss_pred             CccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHhcCceeecccHhHeEeeCcceEEEecccceeeecCCCC----
Confidence                        123345678999999999999999999988733    899999988899888877655443321    


Q ss_pred             CCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCC
Q 045353          154 TRQYRCPEVLLGSKYSTSADLWSFACICFELATGD  188 (358)
Q Consensus       154 t~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~  188 (358)
                      +       -+.+   -.+-|.=-||.+++.|.+|.
T Consensus       449 ~-------~le~---~Qq~D~~~lG~ll~aLAt~~  473 (655)
T KOG3741|consen  449 E-------PLES---QQQNDLRDLGLLLLALATGT  473 (655)
T ss_pred             c-------chhH---HhhhhHHHHHHHHHHHhhcc
Confidence            1       1111   23568888999999999984

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=96.55  E-value=0.0006  Score=72.02  Aligned_cols=131  Identities=9%  Similarity=0.000  Sum_probs=91.6

Q ss_pred             cccCCCCCCCCCCCcccccCCCCCccccccccc----ccChhhhhHHHHhhhhccccccC-CCCC----Cc----ccccc
Q 045353           61 ESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----VNNESSRDNEVKNTSQGVKGHRR-PSRA----TR----KNLLA  127 (358)
Q Consensus        61 ~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~h~-~~~~----hr----~NILl  127 (358)
                      ...+.....+.+.|++++||.+|.+++.+-...    .....-+.....+.......+|. .++.    |+    -|.+|
T Consensus      1294 ~p~rI~ps~s~ee~~r~~~~~~g~~f~iIikg~ee~~~ld~~~v~~~~kvsvl~~~~~ls~tnlg~T~v~~~Lkf~lpmI 1373 (2724)
T KOG1826|consen 1294 DPLRIPPSESTEEYIRSLYVEFGKLFSIIIKGLEESPDLDRSPVHLRHKVSVLNRNVILSLTNLGNTNVSKSLKFTLPMI 1373 (2724)
T ss_pred             ccccCCCCCChHHHHHHHHHHHhHHHHHHHhccccCCcchhchHHHHHHHHHhccchhhhcccCCccchhhhhhhhccce
Confidence            344445666788899999999999999765322    22333333333332333333332 2222    22    58889


Q ss_pred             cCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCccc
Q 045353          128 AVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF  191 (358)
Q Consensus       128 ~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf  191 (358)
                      ..+..+|+.++|+.+.....   ....++++.|++|++...-.++.++|+|..|+.+|..-.|..+|
T Consensus      1374 Vtny~v~~gk~gLdKIknp~~sf~Gl~l~sp~~v~qli~N~ik~t~rsdilr~s~~ly~rs~~n~~f 1440 (2724)
T KOG1826|consen 1374 VTNYNVKLGKGGLDKIKNPVLSFFGLELCSPIYVLQLIKNEIKFTKRSDILRRSLSLYLRSDGNAYF 1440 (2724)
T ss_pred             ecCCcccccccccccccCchHhhhhhhhCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcccHHH
Confidence            99999999999999843322   34457889999999998888988899999999999988887776

>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]

Probab=95.24  E-value=0.014  Score=51.17  Aligned_cols=66  Identities=17%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             CCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCc
Q 045353           71 PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNA  141 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a  141 (358)
                      +.-.+||||++|-.|...-.     +......++..+++-+...-..|++|-    -|||++++|.+.++||--+
T Consensus       180 nRHaVvMe~ieG~eL~~~r~-----~~en~~~il~~il~~~~~~~~~GiVHGDlSefNIlV~~dg~~~vIDwPQ~  249 (304)
T COG0478         180 NRHAVVMEYIEGVELYRLRL-----DVENPDEILDKILEEVRKAYRRGIVHGDLSEFNILVTEDGDIVVIDWPQA  249 (304)
T ss_pred             ccceeeeehcccceeecccC-----cccCHHHHHHHHHHHHHHHHHcCccccCCchheEEEecCCCEEEEeCccc
Confidence            55678999999988876542     122222333333333322224444444    4999999999999999654

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=95.05  E-value=0.021  Score=54.44  Aligned_cols=91  Identities=18%  Similarity=0.201  Sum_probs=59.5

Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      +++||||+|.++.++..|...+..-.      ..+++..+..+.- .+...                            .
T Consensus       110 pKsdVwsl~~i~~el~L~~~l~~~~~------~s~~l~~i~k~~~-~d~~~----------------------------~  154 (725)
T KOG1093|consen  110 PKSDVWSLGFIILELYLGISLEAELT------ESEYLEILLKYYT-DDQEL----------------------------L  154 (725)
T ss_pred             cchhhhhHHHHHHHHHHhhHHHHHHH------HHHHHHHHHHhcc-CchhH----------------------------H
Confidence            49999999999999999987774222      2333333333221 11100                            0


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...... .+.-.++..+..++.+|+-..|..||...+++.++-|.+.
T Consensus       155 ~~a~e~-~~~~~~d~~~~~~~~~c~~~~~~ir~l~~~~~k~~i~~ev  200 (725)
T KOG1093|consen  155 STAMEH-LIQLLADKKRLPLLKKCLWLEPIIRPLPMELSKRCSFTEV  200 (725)
T ss_pred             HHHHHH-HHHHhhhHhHHHHhccCCccccccccchhHHhcCccHHHH
Confidence            000000 1222346678899999999999999999999999999864

>PRK09902 hypothetical protein; Provisional

Probab=94.92  E-value=0.041  Score=46.82  Aligned_cols=72  Identities=11%  Similarity=0.156  Sum_probs=52.3

Q ss_pred             CCCCcccccCCC-CCccccccccc--ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCc--EEEEecCCc
Q 045353           71 PDNFSVDTIPNG-VSVEERQNDSV--VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ--CKLVDFGNA  141 (358)
Q Consensus        71 ~~~~iv~e~~~g-g~L~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~--vkL~DFG~a  141 (358)
                      -.-+||+|-++| -+|.+++....  ..+..+...++..+...+.-+|+.|+.|+    .|||++.++.  ++++||--+
T Consensus        98 ~rA~LVTe~L~g~~~L~~~l~~~~~~~~~~~~k~~il~~va~~ia~LH~~Gv~Hgdly~khIll~~~g~~~v~lIDlEk~  177 (216)
T PRK09902         98 WRALLVTEDMAGFISIADWYAQHAVSPYSDEVRQAMLKAVALAFKKMHSVNRQHGCCYVRHIYVKTEGKAEAGFLDLEKS  177 (216)
T ss_pred             eEEEEEEEeCCCCccHHHHHhcCCcCCcchHHHHHHHHHHHHHHHHHHHCCCcCCCCCHhheeecCCCCeeEEEEEhhcc
Confidence            345789996654 57777665432  23555566777778888888888888888    7999986667  999999866


Q ss_pred             e
Q 045353          142 C  142 (358)
Q Consensus       142 ~  142 (358)
                      +
T Consensus       178 r  178 (216)
T PRK09902        178 R  178 (216)
T ss_pred             c
Confidence            4

>KOG1290 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=94.33  E-value=0.019  Score=54.01  Aligned_cols=111  Identities=11%  Similarity=-0.019  Sum_probs=70.9

Q ss_pred             ccCcccccccccC--ccchhhhHHhhHHHHHhhhh--ccCCCccccccCCCCCC---CCCCCcccccCCCCCcccccccc
Q 045353           20 ESSASKENKSLYG--DLTKNQKKKVKKKAKKAAQG--CAGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      .+.+-||.|+..+  ..++..-..|+-..+.+..-  .-....+|.+.++....   ....++|.|++...-|.-.....
T Consensus       101 q~~r~VAlKVvKSAqhYtEaAlDEIklL~~v~~~Dp~~~~~~~VV~LlD~FkhsGpNG~HVCMVfEvLGdnLLklI~~s~  180 (590)
T KOG1290|consen  101 QNKRYVALKVVKSAQHYTEAALDEIKLLQQVREGDPNDPGKKCVVQLLDHFKHSGPNGQHVCMVFEVLGDNLLKLIKYSN  180 (590)
T ss_pred             cCCeEEEEEEEehhhHHHHHHHHHHHHHHHHHhcCCCCCCCceeeeeeccceecCCCCcEEEEEehhhhhHHHHHHHHhC
Confidence            3445677777654  44455555554443333211  12233666676665543   35667888988665555444333


Q ss_pred             -cccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCC
Q 045353           93 -VVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVD  130 (358)
Q Consensus        93 -~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~  130 (358)
                       ..+....++.|++|++.|+.|+|. .||||.    +|||+...
T Consensus       181 YrGlpl~~VK~I~~qvL~GLdYLH~ecgIIHTDlKPENvLl~~~  224 (590)
T KOG1290|consen  181 YRGLPLSCVKEICRQVLTGLDYLHRECGIIHTDLKPENVLLCST  224 (590)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHhcCccccCCCcceeeeecc
Confidence             246778899999999999999996 688887    99998654

>COG1718 RIO1 Serine/threonine protein kinase involved in cell cycle control [Signal transduction mechanisms / Cell division and chromosome partitioning]

Probab=93.66  E-value=0.17  Score=44.00  Aligned_cols=73  Identities=14%  Similarity=0.097  Sum_probs=44.2

Q ss_pred             CCCCcccccCCCCCcc-cccccccccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceec
Q 045353           71 PDNFSVDTIPNGVSVE-ERQNDSVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWT  144 (358)
Q Consensus        71 ~~~~iv~e~~~gg~L~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~  144 (358)
                      ....+||||+....+. -.+.. ......+...+..++++++.-+-. .+.+|-    -|||+. ++.+.|+|||-|...
T Consensus       139 ~~nVLvMEfIg~~g~pAP~LkD-v~~e~~e~~~~~~~~v~~~~~l~~~a~LVHgDLSEyNiL~~-~~~p~iID~~QaV~~  216 (268)
T COG1718         139 RNNVLVMEFIGDDGLPAPRLKD-VPLELEEAEGLYEDVVEYMRRLYKEAGLVHGDLSEYNILVH-DGEPYIIDVSQAVTI  216 (268)
T ss_pred             cCCeEEEEeccCCCCCCCCccc-CCcCchhHHHHHHHHHHHHHHHHHhcCcccccchhhheEEE-CCeEEEEECcccccc
Confidence            4567899999776322 12222 111121444455555555544433 555555    599999 889999999988554


Q ss_pred             C
Q 045353          145 H  145 (358)
Q Consensus       145 ~  145 (358)
                      .
T Consensus       217 ~  217 (268)
T COG1718         217 D  217 (268)
T ss_pred             C
Confidence            4

>COG2112 Predicted Ser/Thr protein kinase [Signal transduction mechanisms]

Probab=93.05  E-value=0.12  Score=42.47  Aligned_cols=106  Identities=14%  Similarity=0.094  Sum_probs=57.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      .|..+++|+..++.   .+..+..+++....+..... --+++.     -+..++.|||++|-.|...-...   +..+ 
T Consensus        44 ~~~~~a~Kvrr~ds---~r~~l~kEakiLeil~g~~~-~p~vy~-----yg~~~i~me~i~G~~L~~~~~~~---~rk~-  110 (201)
T COG2112          44 RGGEVALKVRRRDS---PRRNLEKEAKILEILAGEGV-TPEVYF-----YGEDFIRMEYIDGRPLGKLEIGG---DRKH-  110 (201)
T ss_pred             cCceEEEEEecCCc---chhhHHHHHHHHHHhhhcCC-CceEEE-----echhhhhhhhhcCcchhhhhhcc---cHHH-
Confidence            55577888877765   45556666654443221111 111111     24456789999999988754421   1112 


Q ss_pred             hHHHHhhhhccccccCCCCCCc------ccccccCCCcEEEEecCCcee
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR------KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr------~NILl~~~~~vkL~DFG~a~~  143 (358)
                         +..+++....+-..||-|-      .||++... .+-|+||..|..
T Consensus       111 ---l~~vlE~a~~LD~~GI~H~El~~~~k~vlv~~~-~~~iIDFd~At~  155 (201)
T COG2112         111 ---LLRVLEKAYKLDRLGIEHGELSRPWKNVLVNDR-DVYIIDFDSATF  155 (201)
T ss_pred             ---HHHHHHHHHHHHHhccchhhhcCCceeEEecCC-cEEEEEccchhh
Confidence               2222233222333344332      56766554 899999998864

>cd05155 APH_ChoK_like_1 Uncharacterized bacterial proteins with similarity to Aminoglycoside 3'-phosphotransferase (APH) and Choline kinase (ChoK) family members

Probab=89.63  E-value=1.7  Score=37.73  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=17.9

Q ss_pred             CCcccccccCCCcEEEEecCCce
Q 045353          120 ATRKNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus       120 ~hr~NILl~~~~~vkL~DFG~a~  142 (358)
                      .|+.|||++.+...-|+||+.|.
T Consensus       171 ~~~~Nvlv~~~~i~giIDw~~a~  193 (235)
T cd05155         171 LAPGNLLVQDGRLSAVIDFGCLG  193 (235)
T ss_pred             CCCCcEEEECCCEEEEEeCcccC
Confidence            35589999876656799999763

The APH/ChoK subfamily is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This family is composed of APH, ChoK, ethanolamine kinase (ETNK), macrolide 2'-phosphotransferase (MPH2'), an unusual homoserine kinase, and uncharacterized proteins with similarity to the N-terminal domain of acyl-CoA dehydrogenase 10 (ACAD10). The members of this family catalyze the transfer of the gamma-phosphoryl group from ATP (or CTP) to small molecule substrates, such as aminoglycosides, macrolides, choline, ethanolamine, and homoserine. Phosphorylation of the antibiotics, aminoglycosides, and macrolides leads to their inactivation and to bacterial antibiotic resista

>TIGR02172 Fb_sc_TIGR02172 Fibrobacter succinogenes paralogous family TIGR02172

Probab=89.36  E-value=1.1  Score=38.86  Aligned_cols=25  Identities=16%  Similarity=0.141  Sum_probs=20.4

Q ss_pred             CCCCCcccccccCCCcEEEEecCCce
Q 045353          117 PSRATRKNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus       117 ~~~~hr~NILl~~~~~vkL~DFG~a~  142 (358)
                      +|-.|+.||++++++ +.|+||+.+.
T Consensus       157 HgD~~~~Nii~~~~~-~~iIDwe~a~  181 (226)
T TIGR02172       157 HGDFQIGNLITSGKG-TYWIDLGDFG  181 (226)
T ss_pred             ecCCCCCcEEEcCCC-cEEEechhcC
Confidence            344577899999888 9999999763

This model describes a paralogous family of five proteins, likely to be enzymes, in the rumen bacterium Fibrobacter succinogenes S85. Members show homology to proteins described by PFAM model pfam01636, a phosphotransferase enzyme family associated with resistance to aminoglycoside antibiotics. However, members of this family score below the current trusted and noise cutoffs for pfam01636.

>PF12260 PIP49_C: Protein-kinase domain of FAM69; InterPro: IPR022049 Family with sequence similarity 69 has three members (A, B and C)

Probab=87.08  E-value=0.56  Score=39.33  Aligned_cols=75  Identities=12%  Similarity=-0.017  Sum_probs=50.7

Q ss_pred             CCCCCCcccccCCCCCcccc---cccccccChhhhhHHHHhhhhccccccCC--CCC-----CcccccccCCCcEEEEec
Q 045353           69 SSPDNFSVDTIPNGVSVEER---QNDSVVNNESSRDNEVKNTSQGVKGHRRP--SRA-----TRKNLLAAVDVQCKLVDF  138 (358)
Q Consensus        69 ~~~~~~iv~e~~~gg~L~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~h~~--~~~-----hr~NILl~~~~~vkL~DF  138 (358)
                      .++.+| |+||...+++...   +..-....+..++.+..++++.+..++..  +.+     +.+|+-+++++.+|++|.
T Consensus        28 ~CG~~~-v~E~~~~~~~~~~~~~l~~~~~~~w~~R~~iA~~lL~~l~~l~~~~~~~~~lcDv~~~nfgv~~~~~lk~iDl  106 (188)
T PF12260_consen   28 SCGRFY-VVEYVGAGSLYGIYRPLSQFLQSPWEQRAKIALQLLELLEELDHGPLGFFYLCDVSPDNFGVNDDGRLKLIDL  106 (188)
T ss_pred             ECCCEE-EEEeecCccccccccccccccccCHHHHHHHHHHHHHHHHHHhcCCCCcEEEeecchHHeEEeCCCcEEEEec
Confidence            346655 9999998876532   11222356677777777777777666541  222     448999999999999999


Q ss_pred             CCceec
Q 045353          139 GNACWT  144 (358)
Q Consensus       139 G~a~~~  144 (358)
                      ..+...
T Consensus       107 d~v~~~  112 (188)
T PF12260_consen  107 DDVFVE  112 (188)
T ss_pred             hhcchh
Confidence            877443

Proteins in this uncharacterised family are described as transmembrane proteins.

>KOG2268 consensus Serine/threonine protein kinase [Signal transduction mechanisms; General function prediction only]

Probab=85.36  E-value=0.7  Score=42.05  Aligned_cols=67  Identities=9%  Similarity=0.080  Sum_probs=41.0

Q ss_pred             CCCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCc
Q 045353           69 SSPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNA  141 (358)
Q Consensus        69 ~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a  141 (358)
                      ....-++|||++.|-.|.....-.   +...   +...+..-+.-+-.+|.||-    -||++++++.++++||--.
T Consensus       179 D~~RH~Vvmelv~g~Pl~~v~~v~---d~~~---ly~~lm~~Iv~la~~GlIHgDFNEFNimv~dd~~i~vIDFPQm  249 (465)
T KOG2268|consen  179 DHNRHCVVMELVDGYPLRQVRHVE---DPPT---LYDDLMGLIVRLANHGLIHGDFNEFNIMVKDDDKIVVIDFPQM  249 (465)
T ss_pred             cccceeeHHHhhcccceeeeeecC---ChHH---HHHHHHHHHHHHHHcCceecccchheeEEecCCCEEEeechHh
Confidence            345667899999999988754311   1111   11111122222333445555    4999999999999999754

>PRK10271 thiK thiamine kinase; Provisional

Probab=81.08  E-value=1.2  Score=37.21  Aligned_cols=26  Identities=19%  Similarity=0.157  Sum_probs=21.0

Q ss_pred             CCCCCcccccccCCCcEEEEecCCcee
Q 045353          117 PSRATRKNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus       117 ~~~~hr~NILl~~~~~vkL~DFG~a~~  143 (358)
                      ++-+|+.||++++++ ++|+||+.|..
T Consensus        81 H~D~~~~N~~~~~~~-~~lIDwe~a~~  106 (188)
T PRK10271         81 HMDVHAGNLVHSASG-LRLIDWEYAGD  106 (188)
T ss_pred             cCCCCCccEEEECCC-EEEEeCCcccC
Confidence            445677899998877 99999998754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	358
1wbp_A	397	Srpk1 Bound To 9mer Docking Motif Peptide Length =		4e-61
3beg_A	381	Crystal Structure Of Sr Protein Kinase 1 Complexed		5e-61
2x7g_A	389	Structure Of Human Serine-Arginine-Rich Protein-Spe		2e-60
1q8y_A	373	The Structure Of The Yeast Sr Protein Kinase, Sky1p		6e-50
1how_A	373	The X-Ray Crystal Structure Of Sky1p, An Sr Protein		6e-50
3kvw_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		1e-17
3k2l_A	429	Crystal Structure Of Dual-Specificity Tyrosine Phos		2e-17
4azf_A	417	Human Dyrk2 In Complex With Leucettine L41 Length =		2e-17
3nr9_A	368	Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length		6e-17
3llt_A	360	Crystal Structure Of Pf14_0431, Kinase Domain Lengt		7e-15
2wu6_A	381	Crystal Structure Of The Human Clk3 In Complex With		1e-14
2exe_A	357	Crystal Structure Of The Phosphorylated Clk3 Length		1e-14
2eu9_A	355	Crystal Structure Of Clk3 Length = 355		2e-14
3anq_A	368	Human Dyrk1aINHIBITOR COMPLEX Length = 368		5e-14
1z57_A	339	Crystal Structure Of Human Clk1 In Complex With 10z		6e-14
4aze_A	382	Human Dyrk1a In Complex With Leucettine L41 Length		6e-14
2vx3_A	382	Crystal Structure Of The Human Dual Specificity Tyr		6e-14
2pk9_A	317	Structure Of The Pho85-pho80 Cdk-cyclin Complex Of		2e-13
2vag_A	339	Crystal Structure Of Di-Phosphorylated Human Clk1 I		3e-13
4exu_A	371	Mapk13, Inactive Form Length = 371		8e-12
3coi_A	353	Crystal Structure Of P38delta Kinase Length = 353		9e-12
1bi8_A	326	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		2e-11
3nup_A	307	Cdk6 (Monomeric) In Complex With Inhibitor Length =		3e-11
1jow_B	308	Crystal Structure Of A Complex Of Human Cdk6 And A		3e-11
4e7w_A	394	Structure Of Gsk3 From Ustilago Maydis Length = 394		8e-11
4e5a_X	360	The W197a Mutant Of P38a Map Kinase Length = 360		2e-10
3e3p_A	360	Glycogen Synthase Kinase From Leishmania Major Leng		3e-10
3d83_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-10
3niz_A	311	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-10
2qkr_A	313	Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5		3e-10
2bal_A	365	P38alpha Map Kinase Bound To Pyrazoloamine Length =		3e-10
3e92_A	371	Crystal Structure Of P38 Kinase In Complex With A B		3e-10
2baq_A	365	P38alpha Bound To Ro3201195 Length = 365		3e-10
3d7z_A	360	Crystal Structure Of P38 Kinase In Complex With A B		3e-10
3mpt_A	371	Crystal Structure Of P38 Kinase In Complex With A P		3e-10
1oz1_A	372	P38 Mitogen-Activated Kinase In Complex With 4-Azai		3e-10
2gfs_A	372	P38 Kinase Crystal Structure In Complex With Ro3201		3e-10
3nnx_A	354	Crystal Structure Of Phosphorylated P38 Alpha In Co		3e-10
3fi4_A	372	P38 Kinase Crystal Structure In Complex With Ro4499		3e-10
2fsl_X	367	Mitogen Activated Protein Kinase P38alpha (D176a+f3		3e-10
3hvc_A	362	Crystal Structure Of Human P38alpha Map Kinase Leng		3e-10
1bl6_A	379	The Complex Structure Of The Map Kinase P38SB216995		3e-10
3od6_X	360	Crystal Structure Of P38alpha Y323t Active Mutant L		3e-10
3ody_X	360	Crystal Structure Of P38alpha Y323q Active Mutant L		3e-10
3gcu_A	360	Human P38 Map Kinase In Complex With Rl48 Length =		3e-10
3zsg_A	362	X-Ray Structure Of P38alpha Bound To Tak-715 Length		3e-10
3dt1_A	383	P38 Complexed With A Quinazoline Inhibitor Length =		4e-10
2npq_A	367	A Novel Lipid Binding Site In The P38 Alpha Map Kin		4e-10
2fso_X	367	Mitogen Activated Protein Kinase P38alpha (D176a) A		4e-10
3kq7_A	380	Structure Of Human P38alpha With N-[4-Methyl-3-(6-{		4e-10
3k3j_A	362	P38alpha Bound To Novel Dfg-Out Compound Pf-0041612		4e-10
2fst_X	367	Mitogen Activated Protein Kinase P38alpha (d176a+f3		4e-10
3odz_X	360	Crystal Structure Of P38alpha Y323r Active Mutant L		4e-10
1di9_A	360	The Structure Of P38 Mitogen-Activated Protein Kina		4e-10
3oht_A	389	Crystal Structure Of Salmo Salar P38alpha Length =		4e-10
2baj_A	365	P38alpha Bound To Pyrazolourea Length = 365		4e-10
3tg1_A	380	Crystal Structure Of P38alpha In Complex With A Map		4e-10
3hrb_A	359	P38 Kinase Crystal Structure In Complex With Small		4e-10
1cm8_A	367	Phosphorylated Map Kinase P38-Gamma Length = 367		4e-10
1bmk_A	379	The Complex Structure Of The Map Kinase P38SB218655		4e-10
1m7q_A	366	Crystal Structure Of P38 Map Kinase In Complex With		4e-10
2y8o_A	362	Crystal Structure Of Human P38alpha Complexed With		4e-10
1ove_A	366	The Structure Of P38 Alpha In Complex With A Dihydr		4e-10
3oef_X	360	Crystal Structure Of Y323f Inactive Mutant Of P38al		4e-10
3p4k_A	370	The Third Conformation Of P38a Map Kinase Observed		4e-10
1lew_A	360	Crystal Structure Of Map Kinase P38 Complexed To Th		5e-10
1ian_A	366	Human P38 Map Kinase Inhibitor Complex Length = 366		5e-10
3nnu_A	354	Crystal Structure Of P38 Alpha In Complex With Dp13		5e-10
3k3i_A	350	P38alpha Bound To Novel Dgf-Out Compound Pf-0021595		5e-10
2oza_B	366	Structure Of P38alpha Complex Length = 366		5e-10
2lgc_A	359	Joint Nmr And X-Ray Refinement Reveals The Structur		5e-10
3s3i_A	349	P38 Kinase Crystal Structure In Complex With Small		5e-10
1zzl_A	351	Crystal Structure Of P38 With Triazolopyridine Leng		5e-10
3hec_A	348	P38 In Complex With Imatinib Length = 348		6e-10
2gtm_A	348	Mutated Mouse P38 Map Kinase Domain In Complex With		6e-10
2puu_A	348	Crystal Structure Of P38 Complex With 1-(5-Tert-But		7e-10
2zoq_A	382	Structural Dissection Of Human Mitogen-Activated Ki		8e-10
3mh2_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		9e-10
3py3_A	380	Crystal Structure Of Phosphorylated P38alpha Map Ki		1e-09
3gcp_A	360	Human P38 Map Kinase In Complex With Sb203580 Lengt		1e-09
4ewq_A	383	Human P38 Alpha Mapk In Complex With A Pyridazine B		1e-09
1ywr_A	360	Crystal Structure Analysis Of Inactive P38 Kinase D		2e-09
1yw2_A	360	Mutated Mus Musculus P38 Kinase (Mp38) Length = 360		2e-09
3mtl_A	324	Crystal Structure Of The Pctaire1 Kinase In Complex		2e-09
3o8p_A	360	Conformational Plasticity Of P38 Map Kinase Dfg Mot		3e-09
2ghl_A	348	Mutant Mus Musculus P38 Kinase Domain In Complex Wi		3e-09
3vuk_A	370	Crystal Structure Of A Cysteine-deficient Mutant M5		3e-09
3sa0_A	360	Complex Of Erk2 With Norathyriol Length = 360		3e-09
3vui_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		4e-09
3v3v_A	379	Structural And Functional Analysis Of Quercetagetin		4e-09
4fv7_A	360	Crystal Structure Of The Erk2 Complexed With E94 Le		4e-09
3npc_A	364	Crystal Structure Of Jnk2 Complexed With Birb796 Le		4e-09
3gi3_A	360	Crystal Structure Of A N-Phenyl-N'-Naphthylurea Ana		4e-09
3mh0_A	360	Mutagenesis Of P38 Map Kinase Eshtablishes Key Role		4e-09
3gbz_A	329	Structure Of The Cmgc Cdk Kinase From Giardia Lambl		5e-09
3vuh_A	370	Crystal Structure Of A Cysteine-deficient Mutant M3		5e-09
3tei_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-09
4h3q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		5e-09
3mh1_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		6e-09
3mh3_A	360	Mutagenesis Of P38 Map Kinase Establishes Key Roles		6e-09
2ojg_A	380	Crystal Structure Of Erk2 In Complex With N,n-dimet		7e-09
1pme_A	380	Structure Of Penta Mutant Human Erk2 Map Kinase Com		7e-09
4gsb_A	364	Monoclinic Crystal Form Of The Apo-Erk2 Length = 36		7e-09
3e7o_A	360	Crystal Structure Of Jnk2 Length = 360		7e-09
2y9q_A	362	Crystal Structure Of Human Erk2 Complexed With A Ma		7e-09
3vug_A	370	Crystal Structure Of A Cysteine-deficient Mutant M2		7e-09
3oz6_A	388	Crystal Structure Of Mapk From Cryptosporidium Parv		7e-09
3qyw_A	364	Crystal Structure Of Erk2 In Complex With An Inhibi		8e-09
4fux_A	360	Crystal Structure Of The Erk2 Complexed With E75 Le		8e-09
1wzy_A	368	Crystal Structure Of Human Erk2 Complexed With A Py		8e-09
1tvo_A	368	The Structure Of Erk2 In Complex With A Small Molec		8e-09
3vud_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		8e-09
1gol_A	364	Coordinates Of Rat Map Kinase Erk2 With An Arginine		8e-09
3o71_A	358	Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length		8e-09
3zu7_A	365	Crystal Structure Of A Designed Selected Ankyrin Re		8e-09
2z7l_A	366	Unphosphorylated Mitogen Activated Protein Kinase E		8e-09
3c9w_A	357	Crystal Structure Of Erk-2 With Hypothemycin Covale		8e-09
2fys_B	364	Crystal Structure Of Erk2 Complex With Kim Peptide		8e-09
4fv6_A	360	Crystal Structure Of The Erk2 Complexed With E57 Le		9e-09
4erw_A	306	Cdk2 In Complex With Staurosporine Length = 306		9e-09
2w96_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		9e-09
3r63_A	358	Structure Of Erk2 (Spe) Mutant (S246e) Length = 358		9e-09
2xrw_A	371	Linear Binding Motifs For Jnk And For Calcineurin A		1e-08
2gph_A	364	Docking Motif Interactions In The Map Kinase Erk2 L		1e-08
1gz8_A	299	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
3gc9_A	370	The Structure Of P38beta C119s, C162s In Complex Wi		1e-08
1ukh_A	369	Structural Basis For The Selective Inhibition Of Jn		1e-08
1ob3_A	288	Structure Of P. Falciparum Pfpk5 Length = 288		1e-08
3pxf_A	306	Cdk2 In Complex With Two Molecules Of 8-Anilino-1-N		1e-08
3gc8_A	370	The Structure Of P38beta C162s In Complex With A Di		1e-08
1vyw_A	309	Structure Of Cdk2CYCLIN A WITH PNU-292137 Length =		1e-08
3gp0_A	348	Crystal Structure Of Human Mitogen Activated Protei		1e-08
3ezr_A	300	Cdk-2 With Indazole Inhibitor 17 Bound At Its Activ		1e-08
3zuv_A	364	Crystal Structure Of A Designed Selected Ankyrin Re		1e-08
2erk_A	365	Phosphorylated Map Kinase Erk2 Length = 365		1e-08
3pj8_A	299	Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]		1e-08
1oit_A	299	Imidazopyridines: A Potent And Selective Class Of C		1e-08
1gii_A	298	Human Cyclin Dependent Kinase 2 Complexed With The		1e-08
3g33_A	308	Crystal Structure Of Cdk4CYCLIN D3 Length = 308		1e-08
1pf8_A	298	Crystal Structure Of Human Cyclin-dependent Kinase		1e-08
2w17_A	299	Cdk2 In Complex With The Imidazole Pyrimidine Amide		1e-08
1fin_A	298	Cyclin A-Cyclin-Dependent Kinase 2 Complex Length =		1e-08
1oir_A	299	Imidazopyridines: A Potent And Selective Class Of C		2e-08
1h01_A	298	Cdk2 In Complex With A Disubstituted 2, 4-Bis Anili		2e-08
3ttj_A	464	Crystal Structure Of Jnk3 Complexed With Cc-359, A		2e-08
3fi3_A	364	Crystal Structure Of Jnk3 With Indazole Inhibitor,		2e-08
1v0o_A	288	Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulpho		2e-08
3vum_A	370	Crystal Structure Of A Cysteine-deficient Mutant M7		2e-08
3kvx_A	364	Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Le		2e-08
1jnk_A	423	The C-Jun N-Terminal Kinase (Jnk3s) Complexed With		2e-08
1v0b_A	288	Crystal Structure Of The T198a Mutant Of Pfpk5 Leng		2e-08
3vul_A	370	Crystal Structure Of A Cysteine-deficient Mutant M1		2e-08
2r9s_A	356	C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Qu		3e-08
2ok1_A	365	Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3		3e-08
3ptg_A	363	Design And Synthesis Of A Novel, Orally Efficacious		3e-08
3oxi_A	362	Design And Synthesis Of Disubstituted Thiophene And		3e-08
2xs0_A	386	Linear Binding Motifs For Jnk And For Calcineurin A		3e-08
2o0u_A	364	Crystal Structure Of Human Jnk3 Complexed With N-{3		3e-08
1pmn_A	364	Crystal Structure Of Jnk3 In Complex With An Imidaz		3e-08
3fv8_A	355	Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Le		3e-08
2i6l_A	320	Crystal Structure Of Human Mitogen Activated Protei		3e-08
2exc_X	356	Inhibitor Complex Of Jnk3 Length = 356		4e-08
4h36_A	356	Crystal Structure Of Jnk3 In Complex With Atf2 Pept		4e-08
2b1p_A	355	Inhibitor Complex Of Jnk3 Length = 355		4e-08
3elj_A	369	Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine		4e-08
3fi2_A	353	Crystal Structure Of Jnk3 With Amino-Pyrazole Inhib		4e-08
2w99_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		5e-08
2iw8_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82		5e-08
4eoj_A	302	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		5e-08
1ogu_A	302	Structure Of Human Thr160-phospho Cdk2/cyclin A Com		5e-08
3pze_A	358	Jnk1 In Complex With Inhibitor Length = 358		5e-08
1h1p_A	303	Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMP		5e-08
2iw6_A	302	Structure Of Human Thr160-Phospho Cdk2-Cyclin A Com		6e-08
4eok_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Huma		6e-08
1e9h_A	297	Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex		6e-08
3bht_A	300	Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN		6e-08
4eos_A	300	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		6e-08
4eoq_A	301	Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Co		6e-08
4bcq_A	301	Structure Of Cdk2 In Complex With Cyclin A And A 2-		6e-08
1qmz_A	299	Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Com		6e-08
4eom_A	301	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-08
1w98_A	298	The Structural Basis Of Cdk2 Activation By Cyclin E		6e-08
3qhr_A	298	Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic		6e-08
4i3z_A	296	Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNES		6e-08
1jst_A	298	Phosphorylated Cyclin-Dependent Kinase-2 Bound To C		6e-08
2w9f_B	306	Crystal Structure Of Cdk4 In Complex With A D-Type		6e-08
4eon_A	300	Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Hum		6e-08
2jgz_A	289	Crystal Structure Of Phospho-Cdk2 In Complex With C		6e-08
4eop_A	300	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-08
2g01_A	370	Pyrazoloquinolones As Novel, Selective Jnk1 Inhibit		7e-08
4eoo_A	299	Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3		7e-08
4eoi_A	299	Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyc		7e-08
4ic7_A	442	Crystal Structure Of The Erk5 Kinase Domain In Comp		8e-08
4b99_A	398	Crystal Structure Of Mapk7 (Erk5) With Inhibitor Le		8e-08
3o17_A	370	Crystal Structure Of Jnk1-Alpha1 Isoform Length = 3		1e-07
4aaa_A	331	Crystal Structure Of The Human Cdkl2 Kinase Domain		2e-07
3say_A	430	Crystal Structure Of Human Glycogen Synthase Kinase		3e-07
1q3d_A	424	Gsk-3 Beta Complexed With Staurosporine Length = 42		3e-07
1pyx_A	422	Gsk-3 Beta Complexed With Amp-Pnp Length = 422		3e-07
4acc_A	465	Gsk3b In Complex With Inhibitor Length = 465		4e-07
1i09_A	420	Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Len		4e-07
1q5k_A	414	Crystal Structure Of Glycogen Synthase Kinase 3 In		4e-07
3zrk_A	371	Identification Of 2-(4-Pyridyl)thienopyridinones As		5e-07
1r0e_A	391	Glycogen Synthase Kinase-3 Beta In Complex With 3-I		5e-07
4dit_A	382	Crystal Structure Of Gsk3beta In Complex With A Imi		5e-07
4afj_A	367	5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selec		5e-07
1gng_A	378	Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With		5e-07
3gb2_A	353	Gsk3beta Inhibitor Complex Length = 353		7e-07
3f7z_A	350	X-ray Co-crystal Structure Of Glycogen Synthase Kin		8e-07
3zdi_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		8e-07
2o5k_A	372	Crystal Structure Of Gsk3beta In Complex With A Ben		8e-07
3f88_A	349	Glycogen Synthase Kinase 3beta Inhibitor Complex Le		8e-07
2ow3_A	352	Glycogen Synthase Kinase-3 Beta In Complex With Bis		9e-07
1uv5_A	350	Glycogen Synthase Kinase 3 Beta Complexed With 6-Br		1e-06
3sd0_A	350	Identification Of A Glycogen Synthase Kinase-3b Inh		1e-06
1o9u_A	350	Glycogen Synthase Kinase 3 Beta Complexed With Axin		1e-06
1h8f_A	352	Glycogen Synthase Kinase 3 Beta. Length = 352		2e-06
3eb0_A	383	Crystal Structure Of Cgd4_240 From Cryptosporidium		2e-06
3igo_A	486	Crystal Structure Of Cryptosporidium Parvum Cdpk1,		3e-06
2f9g_A	353	Crystal Structure Of Fus3 Phosphorylated On Tyr182		4e-06
3rp9_A	458	Crystal Structure Of The Apo Mapk From Toxoplasma G		5e-06
2b9f_A	353	Crystal Structure Of Non-Phosphorylated Fus3 Length		5e-06
1h4l_A	292	Structure And Regulation Of The Cdk5-P25(Nck5a) Com		6e-06
2wei_A	287	Crystal Structure Of The Kinase Domain Of Cryptospo		7e-06
3dfa_A	286	Crystal Structure Of Kinase Domain Of Calcium-depen		7e-06
1ung_A	292	Structural Mechanism For The Inhibition Of Cdk5-P25		1e-05
1ua2_A	346	Crystal Structure Of Human Cdk7 Length = 346		1e-05
4agu_A	311	Crystal Structure Of The Human Cdkl1 Kinase Domain		2e-05
2b9h_A	353	Crystal Structure Of Fus3 With A Docking Motif From		2e-05
4gs6_A	315	Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxoz		2e-05
2eva_A	307	Structural Basis For The Interaction Of Tak1 Kinase		2e-05
3u87_A	349	Structure Of A Chimeric Construct Of Human Ck2alpha		2e-05
3n9x_A	432	Crystal Structure Of Map Kinase From Plasmodium Ber		3e-05
1jwh_A	337	Crystal Structure Of Human Protein Kinase Ck2 Holoe		4e-05
4dgl_C	335	Crystal Structure Of The Ck2 Tetrameric Holoenzyme		4e-05
2zjw_A	340	Crystal Structure Of Human Ck2 Alpha Complexed With		5e-05
3q9w_A	336	Crystal Structure Of Human Ck2 Alpha In Complex Wit		5e-05
3juh_A	335	Crystal Structure Of A Mutant Of Human Protein Kina		5e-05
1na7_A	329	Crystal Structure Of The Catalytic Subunit Of Human		5e-05
3nsz_A	330	Human Ck2 Catalytic Domain In Complex With Amppn Le		5e-05
1pjk_A	334	Crystal Structure Of A C-terminal Deletion Mutant O		5e-05
3nie_A	429	Crystal Structure Of Pf11_0147 Length = 429		5e-05
3bqc_A	335	High Ph-Value Crystal Structure Of Emodin In Comple		5e-05
2r7i_A	335	Crystal Structure Of Catalytic Subunit Of Protein K		5e-05
3nga_A	333	Human Ck2 Catalytic Domain In Complex With Cx-4945		5e-05
3q04_A	328	Crystal Structure Of The Apo-Form Of Human Ck2 Alph		5e-05
3h30_A	334	Crystal Structure Of The Catalytic Subunit Of Human		5e-05
3mb6_A	331	Human Ck2 Catalytic Domain In Complex With A Difura		5e-05
2h34_A	309	Apoenzyme Crystal Structure Of The Tuberculosis Ser		6e-05
1s9i_A	354	X-Ray Structure Of The Human Mitogen-Activated Prot		7e-05
4an2_A	301	Crystal Structures Of Human Mek1 With Carboxamide-B		8e-05
3qbn_A	281	Structure Of Human Aurora A In Complex With A Diami		9e-05
3qa8_A	676	Crystal Structure Of Inhibitor Of Kappa B Kinase Be		9e-05
3rzf_A	677	Crystal Structure Of Inhibitor Of Kappab Kinase Bet		9e-05
2jed_A	352	The Crystal Structure Of The Kinase Domain Of The P		9e-05
3cik_A	689	Human Grk2 In Complex With Gbetagamma Subunits Leng		1e-04
3krw_A	688	Human Grk2 In Complex With Gbetgamma Subunits And B		1e-04
2y4i_C	395	Ksr2-Mek1 Heterodimer Length = 395		2e-04
2w4o_A	349	Crystal Structure Of Human Camk4 In Complex With 4-		2e-04
1omw_A	689	Crystal Structure Of The Complex Between G Protein-		2e-04
3psc_A	695	Bovine Grk2 In Complex With Gbetagamma Subunits Len		2e-04
3lm0_A	327	Crystal Structure Of Human SerineTHREONINE KINASE 1		2e-04
1zmu_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
1zmv_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		2e-04
1xjd_A	345	Crystal Structure Of Pkc-Theta Complexed With Staur		2e-04
3orn_A	307	Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In		2e-04
3eqc_A	360	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
2bmc_A	306	Aurora-2 T287d T288d Complexed With Pha-680632 Leng		2e-04
3rgf_A	405	Crystal Structure Of Human Cdk8CYCC Length = 405		2e-04
2z7q_A	321	Crystal Structure Of The N-Terminal Kinase Domain O		2e-04
2p55_A	333	X-Ray Structure Of The Human Mitogen-Activated Prot		2e-04
1s9j_A	341	X-Ray Structure Of The Human Mitogen-Activated Prot		3e-04
3r21_A	271	Design, Synthesis, And Biological Evaluation Of Pyr		3e-04
3mbl_A	328	Crystal Structure Of The Human Mitogen-Activated Pr		3e-04
3iec_A	319	Helicobacter Pylori Caga Inhibits Par1MARK FAMILY K		3e-04
3dv3_A	322	Mek1 With Pf-04622664 Bound Length = 322		3e-04
3sls_A	304	Crystal Structure Of Human Mek-1 Kinase In Complex		3e-04
3lij_A	494	Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820)		3e-04
3pwy_A	311	Crystal Structure Of An Extender (Spd28345)-Modifie		3e-04
3g51_A	325	Structural Diversity Of The Active Conformation Of		4e-04
2r0i_A	327	Crystal Structure Of A Kinase Mark2PAR-1 Mutant Len		4e-04
3lau_A	287	Crystal Structure Of Aurora2 Kinase In Complex With		5e-04
2c6e_A	283	Aurora A Kinase Activated Mutant (T287d) In Complex		5e-04
4el9_A	305	Structure Of N-Terminal Kinase Domain Of Rsk2 With		5e-04
3ubd_A	304	Structure Of N-Terminal Domain Of Rsk2 Kinase In Co		5e-04
2j4z_A	306	Structure Of Aurora-2 In Complex With Pha-680626 Le		5e-04
3fdn_A	279	Structure-Based Drug Design Of Novel Aurora Kinase		6e-04
2c6d_A	275	Aurora A Kinase Activated Mutant (T287d) In Complex		6e-04
2wzj_A	327	Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82		6e-04
3bhy_A	283	Crystal Structure Of Human Death Associated Protein		7e-04
1mq4_A	272	Crystal Structure Of Aurora-A Protein Kinase Length		7e-04
1muo_A	297	Crystal Structure Of Aurora-2, An Oncogenic Serine-		7e-04
1zmw_A	327	Catalytic And Ubiqutin-Associated Domains Of Mark2P		7e-04
3a7f_A	303	Human Mst3 Kinase Length = 303		8e-04
2wtw_A	285	Aurora-A Inhibitor Structure (2nd Crystal Form) Len		8e-04
3d14_A	272	Crystal Structure Of Mouse Aurora A (Asn186->gly, L		9e-04
3dls_A	335	Crystal Structure Of Human Pas Kinase Bound To Adp		9e-04

>pdb|1WBP|A Chain A, Srpk1 Bound To 9mer Docking Motif Peptide Length = 397

Iteration: 1
 Score =  231 bits (589), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 134/168 (79%)
Query: 128 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct: 230 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 289
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           D LF+PHSG+ Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W 
Sbjct: 290 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 349
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           + +VLVEKY++++ +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 350 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS 397

>pdb|3BEG|A Chain A, Crystal Structure Of Sr Protein Kinase 1 Complexed To Its Substrate AsfSF2 Length = 381

Iteration: 1
 Score =  231 bits (589), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 96/168 (57%), Positives = 134/168 (79%)
Query: 128 AVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           A  ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATG
Sbjct: 214 AEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATG 273
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           D LF+PHSG+ Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W 
Sbjct: 274 DYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWG 333
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           + +VLVEKY++++ +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 334 LFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS 381

>pdb|2X7G|A Chain A, Structure Of Human Serine-Arginine-Rich Protein-Specific Kinase 2 (Srpk2) Bound To Purvalanol B Length = 389

Iteration: 1
 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 98/165 (59%), Positives = 128/165 (77%)
Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+G+ YST AD+WS AC+ FELATGD L
Sbjct: 225 IRVKIADLGNACWVHKHFTEDIQTRQYRSIEVLIGAGYSTPADIWSTACMAFELATGDYL 284
Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG++Y +DEDH+A ++ELLG +PR  AL G+YSR+FFNR G+LRHI +L+ W +  
Sbjct: 285 FEPHSGEDYSRDEDHIAHIIELLGSIPRHFALSGKYSREFFNRRGELRHITKLKPWSLFD 344
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           VLVEKY +   DA    DFL+P+L+ VPEKR +A +CL HPW+++
Sbjct: 345 VLVEKYGWPHEDAAQFTDFLIPMLEMVPEKRASAGECLRHPWLNS 389

>pdb|1Q8Y|A Chain A, The Structure Of The Yeast Sr Protein Kinase, Sky1p, With Bound Adp Length = 373

Iteration: 1
 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 123/187 (65%)
Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           +Q K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD L
Sbjct: 175 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 234
Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+P  G +Y KD+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWP+  
Sbjct: 235 FEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED 294
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPR 310
           VL EKY F++ +AK+++DFL P+L   P KR  A   ++HPW+     + E  +   E  
Sbjct: 295 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELY 354
Query: 311 ETEGSIP 317
            +   IP
Sbjct: 355 GSGSDIP 361

>pdb|1HOW|A Chain A, The X-Ray Crystal Structure Of Sky1p, An Sr Protein Kinase In Yeast Length = 373

Iteration: 1
 Score =  194 bits (493), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 87/187 (46%), Positives = 123/187 (65%)
Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           +Q K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD L
Sbjct: 175 IQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFL 234
Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+P  G +Y KD+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWP+  
Sbjct: 235 FEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLED 294
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPR 310
           VL EKY F++ +AK+++DFL P+L   P KR  A   ++HPW+     + E  +   E  
Sbjct: 295 VLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELY 354
Query: 311 ETEGSIP 317
            +   IP
Sbjct: 355 GSGSDIP 361

>pdb|3KVW|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) In Complex With An Indirubin Ligand Length = 429

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K++DFG++C+ H++    IQ+R YR PEV+LG++Y    D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL- 252
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+         + VL 
Sbjct: 300 -PGED---EGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 253 ------------VEKYDFNER----DAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                        E  ++       D     DFL   L++ P  R T  Q L HPW+
Sbjct: 356 GGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412

>pdb|3K2L|A Chain A, Crystal Structure Of Dual-Specificity Tyrosine Phosphorylation Regulated Kinase 2 (Dyrk2) Length = 429

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K++DFG++C+ H++    IQ+R YR PEV+LG++Y    D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYXXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL- 252
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+         + VL 
Sbjct: 300 -PGED---EGDQLACMIELLGMPXQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 253 ------------VEKYDFNER----DAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                        E  ++       D     DFL   L++ P  R T  Q L HPW+
Sbjct: 356 GGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412

>pdb|4AZF|A Chain A, Human Dyrk2 In Complex With Leucettine L41 Length = 417

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 57/177 (32%), Positives = 87/177 (49%), Gaps = 23/177 (12%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K++DFG++C+ H++    IQ+R YR PEV+LG++Y    D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTXIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLL-- 299
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL- 252
             G++   + D LA M+ELLGM  +K+    + +++F +  G  R+         + VL 
Sbjct: 300 -PGED---EGDQLACMIELLGMPSQKLLDASKRAKNFVSXKGYPRYCTVTTLSDGSVVLN 355
Query: 253 ------------VEKYDFNER----DAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                        E  ++       D     DFL   L++ P  R T  Q L HPW+
Sbjct: 356 GGRSRRGKLRGPPESREWGNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWL 412

>pdb|3NR9|A Chain A, Structure Of Human Cdc2-Like Kinase 2 (Clk2) Length = 368

Iteration: 1
 Score = 84.7 bits (208), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 83/168 (49%), Gaps = 18/168 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++VDFG+A + H+  +  + TR YR PEV+L   +S   D+WS  CI FE   G  LF  
Sbjct: 196 RVVDFGSATFDHEHHSTIVSTRHYRAPEVILELGWSQPCDVWSIGCIIFEYYVGFTLFQT 255
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL-------RHIRRLRFW 246
           H       + +HLA+M  +LG +P ++    R  + F+    D        R++R     
Sbjct: 256 HD------NREHLAMMERILGPIPSRMIRKTRKQKYFYRGRLDWDENTSAGRYVRE-NCK 308
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           P+ + L  + +    +   + D +  +L++ P KR T  + L HP+ +
Sbjct: 309 PLRRYLTSEAE----EHHQLFDLIESMLEYEPAKRLTLGEALQHPFFA 352

>pdb|3LLT|A Chain A, Crystal Structure Of Pf14_0431, Kinase Domain Length = 360

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 115 RRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADL 174
           RR +   +  +        KL+DFG A +      + I TRQYR PEV+L   +  S+D+
Sbjct: 183 RRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDM 242
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL------GGRY-S 227
           WSF C+  EL TG +LF  H      +  +HLA+M  ++  +P+ +        G +Y +
Sbjct: 243 WSFGCVLAELYTGSLLFRTH------EHMEHLAMMESIIQPIPKNMLYEATKTNGSKYVN 296
Query: 228 RDFF--------NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPE 279
           +D          +    ++H+++    P+ K++  K++          DFL  IL   P 
Sbjct: 297 KDELKLAWPENASSINSIKHVKKC--LPLYKII--KHEL-------FCDFLYSILQIDPT 345
Query: 280 KRPTAAQCLSHPWM 293
            RP+ A+ L H ++
Sbjct: 346 LRPSPAELLKHKFL 359

>pdb|2WU6|A Chain A, Crystal Structure Of The Human Clk3 In Complex With Dki Length = 381

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++ DFG+A + H+  T  + TR YR PEV+L   ++   D+WS  CI FE   G  LF  
Sbjct: 214 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 273
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN-------RHGDLRHIRRLRFW 246
           H      ++ +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 274 H------ENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 326
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           P+   +++    +  +   + D +  +L+F P +R T A+ L HP+ + 
Sbjct: 327 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAG 371

>pdb|2EXE|A Chain A, Crystal Structure Of The Phosphorylated Clk3 Length = 357

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++ DFG+A + H+  T  + TR YR PEV+L   ++   D+WS  CI FE   G  LF  
Sbjct: 191 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 250
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN-------RHGDLRHIRRLRFW 246
           H      ++ +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 251 H------ENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 303
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           P+   +++    +  +   + D +  +L+F P +R T A+ L HP+ + 
Sbjct: 304 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAG 348

>pdb|2EU9|A Chain A, Crystal Structure Of Clk3 Length = 355

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 18/169 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++ DFG+A + H+  T  + TR YR PEV+L   ++   D+WS  CI FE   G  LF  
Sbjct: 182 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN-------RHGDLRHIRRLRFW 246
           H      ++ +HL +M ++LG +P  +    R  + F+           D R+++     
Sbjct: 242 H------ENREHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKE-NCK 294
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           P+   +++    +  +   + D +  +L+F P +R T A+ L HP+ + 
Sbjct: 295 PLKSYMLQ----DSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAG 339

>pdb|3ANQ|A Chain A, Human Dyrk1aINHIBITOR COMPLEX Length = 368

Iteration: 1
 Score = 75.1 bits (183), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y  + D+WS  CI  E+ TG+ LF  
Sbjct: 182 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 239
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 240 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 278

>pdb|1Z57|A Chain A, Crystal Structure Of Human Clk1 In Complex With 10z-Hymenialdisine Length = 339

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 48/167 (28%), Positives = 82/167 (49%), Gaps = 18/167 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG+A +  +  +  + TR YR PEV+L   +S   D+WS  CI  E   G  +F  
Sbjct: 177 KVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL-------RHIRRLRFW 246
           H        ++HLA+M  +LG +P+ +    R  + F +   D        R++ R    
Sbjct: 237 HDS------KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR-ACK 289
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           P+ + ++ +   +ER    + D +  +L++ P KR T  + L HP+ 
Sbjct: 290 PLKEFMLSQDVEHER----LFDLIQKMLEYDPAKRITLREALKHPFF 332

>pdb|4AZE|A Chain A, Human Dyrk1a In Complex With Leucettine L41 Length = 382

Iteration: 1
 Score = 75.1 bits (183), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y  + D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 258
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 259 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 297

>pdb|2VX3|A Chain A, Crystal Structure Of The Human Dual Specificity Tyrosine- Phosphorylation-Regulated Kinase 1a Length = 382

Iteration: 1
 Score = 74.7 bits (182), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 6/103 (5%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y  + D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQXIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLF-- 258
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
            SG N   + D +  ++E+LG+ P  I      +R FF +  D
Sbjct: 259 -SGAN---EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPD 297

>pdb|2PK9|A Chain A, Structure Of The Pho85-pho80 Cdk-cyclin Complex Of The Phosphate-responsive Signal Transduction Pathway Length = 317

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/182 (35%), Positives = 90/182 (49%), Gaps = 30/182 (16%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL     Q KL DFG A         F++++ T  YR P+VL+GS+ YSTS D+WS  
Sbjct: 137 QNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCG 196
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIALGGRYSRDFFNR 233
           CI  E+ TG  LF    G N   DE+ L L+ +++G     + P    L  +Y+ +   R
Sbjct: 197 CILAEMITGKPLF---PGTN---DEEQLKLIFDIMGTPNESLWPSVTKL-PKYNPNIQQR 249
Query: 234 -HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
              DLR + +    P  K   E  D N      + DFL  +L   P+ R +A Q L HPW
Sbjct: 250 PPRDLRQVLQ----PHTK---EPLDGN------LMDFLHGLLQLNPDMRLSAKQALHHPW 296
Query: 293 MS 294
            +
Sbjct: 297 FA 298

>pdb|2VAG|A Chain A, Crystal Structure Of Di-Phosphorylated Human Clk1 In Complex With A Novel Substituted Indole Inhibitor Length = 339

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 81/167 (48%), Gaps = 18/167 (10%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG+A +  +  +  +  R YR PEV+L   +S   D+WS  CI  E   G  +F  
Sbjct: 177 KVVDFGSATYDDEHHSTLVXXRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236
Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL-------RHIRRLRFW 246
           H        ++HLA+M  +LG +P+ +    R  + F +   D        R++ R    
Sbjct: 237 HDS------KEHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSR-ACK 289
Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           P+ + ++ +   +ER    + D +  +L++ P KR T  + L HP+ 
Sbjct: 290 PLKEFMLSQDVEHER----LFDLIQKMLEYDPAKRITLREALKHPFF 332

>pdb|4EXU|A Chain A, Mapk13, Inactive Form Length = 371

Iteration: 1
 Score = 67.8 bits (164), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A     + T  + TR YR PEV+L    Y+ + D+WS  CI  
Sbjct: 174 NLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMA 233
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E+ TG  LF         K +D+L  + ++L        + G    +F  +  D      
Sbjct: 234 EMLTGKTLF---------KGKDYLDQLTQIL-------KVTGVPGTEFVQKLNDKAAKSY 277
Query: 243 LRFWPMNKVLVEKYDFNE---RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
           ++  P       + DF +   R +   AD L  +L+   +KR TAAQ L+HP+       
Sbjct: 278 IQSLPQTP----RKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEP---F 330
Query: 300 REPSMAAGEPRETEGSIP 317
           R+P        ETE   P
Sbjct: 331 RDPE------EETEAQQP 342

>pdb|3COI|A Chain A, Crystal Structure Of P38delta Kinase Length = 353

Iteration: 1
 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 87/198 (43%), Gaps = 33/198 (16%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A     + T  + TR YR PEV+L    Y+ + D+WS  CI  
Sbjct: 156 NLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMA 215
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E+ TG  LF         K +D+L  + ++L        + G    +F  +  D      
Sbjct: 216 EMLTGKTLF---------KGKDYLDQLTQIL-------KVTGVPGTEFVQKLNDKAAKSY 259
Query: 243 LRFWPMNKVLVEKYDFNE---RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
           ++  P       + DF +   R +   AD L  +L+   +KR TAAQ L+HP+       
Sbjct: 260 IQSLPQT----PRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEP---F 312
Query: 300 REPSMAAGEPRETEGSIP 317
           R+P        ETE   P
Sbjct: 313 RDPE------EETEAQQP 324

>pdb|1BI8|A Chain A, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 326

Iteration: 1
 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 111 VKGHRRPSRATR-KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK 167
           +  HR   R  + +N+L     Q KL DFG A     Q   T+ + T  YR PEVLL S 
Sbjct: 136 LHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS 195
Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIAL 222
           Y+T  DLWS  CI  E+     LF   S      D D L  +++++G+      PR +AL
Sbjct: 196 YATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVAL 249
Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                R  F+              P+ K + +  +  +       D L+  L F P KR 
Sbjct: 250 ----PRQAFHSKSA---------QPIEKFVTDIDELGK-------DLLLKCLTFNPAKRI 289
Query: 283 TAAQCLSHPWM 293
           +A   LSHP+ 
Sbjct: 290 SAYSALSHPYF 300

>pdb|3NUP|A Chain A, Cdk6 (Monomeric) In Complex With Inhibitor Length = 307

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 111 VKGHRRPSRATR-KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK 167
           +  HR   R  + +N+L     Q KL DFG A     Q   T+ + T  YR PEVLL S 
Sbjct: 136 LHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS 195
Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIAL 222
           Y+T  DLWS  CI  E+     LF   S      D D L  +++++G+      PR +AL
Sbjct: 196 YATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVAL 249
Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                R  F+              P+ K + +  +  +       D L+  L F P KR 
Sbjct: 250 ----PRQAFHSKSA---------QPIEKFVTDIDELGK-------DLLLKCLTFNPAKRI 289
Query: 283 TAAQCLSHPWM 293
           +A   LSHP+ 
Sbjct: 290 SAYSALSHPYF 300

>pdb|1JOW|B Chain B, Crystal Structure Of A Complex Of Human Cdk6 And A Viral Cyclin Length = 308

Iteration: 1
 Score = 65.9 bits (159), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 83/191 (43%), Gaps = 34/191 (17%)
Query: 111 VKGHRRPSRATR-KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK 167
           +  HR   R  + +N+L     Q KL DFG A     Q   T+ + T  YR PEVLL S 
Sbjct: 136 LHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSS 195
Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIAL 222
           Y+T  DLWS  CI  E+     LF   S      D D L  +++++G+      PR +AL
Sbjct: 196 YATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVAL 249
Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                R  F+              P+ K + +  +  +       D L+  L F P KR 
Sbjct: 250 ----PRQAFHSKSA---------QPIEKFVTDIDELGK-------DLLLKCLTFNPAKRI 289
Query: 283 TAAQCLSHPWM 293
           +A   LSHP+ 
Sbjct: 290 SAYSALSHPYF 300

>pdb|4E7W|A Chain A, Structure Of Gsk3 From Ustilago Maydis Length = 394

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 76/166 (45%), Gaps = 26/166 (15%)
Query: 133 CKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGDV 189
            KL+DFG+A      +   + I +R YR PE++ G + Y+T+ D+WS  C+  EL  G  
Sbjct: 181 LKLIDFGSAKILIAGEPNVSXICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQP 240
Query: 190 LFDPHSGDNYDKDEDHLALMMELLGMMPRK--IALGGRYSRDFFNRHGDLRHIRRLRFWP 247
           LF   SG       D L  ++++LG   R+    +   Y    F          ++R  P
Sbjct: 241 LFPGESGI------DQLVEIIKVLGTPSREQIKTMNPNYMEHKFP---------QIRPHP 285
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            +KV      F  R   D  D +  +L++ P  R TA + L HP+ 
Sbjct: 286 FSKV------FRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFF 325

>pdb|4E5A|X Chain X, The W197a Mutant Of P38a Map Kinase Length = 360

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L +  Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNAMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3E3P|A Chain A, Glycogen Synthase Kinase From Leishmania Major Length = 360

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 86/185 (46%), Gaps = 28/185 (15%)
Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTN--DIQTRQYRCPEVLLGSK-YSTSADLWSFACIC 181
           L+   D   KL DFG+A        N   I +R YR PE++ G++ Y+T+ D+WS  CI 
Sbjct: 163 LVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIF 222
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR---DFFNRHGDLR 238
            E+  G+ +F    GDN       L  ++ +LG   R++      S    D +N  G   
Sbjct: 223 AEMMLGEPIF---RGDN---SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKG--- 273
Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
                   P + V     D + +DAK+  D L  +L ++PE+R    + L HP+     +
Sbjct: 274 -------IPWSNVFS---DHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFD---E 320
Query: 299 LREPS 303
           L +P+
Sbjct: 321 LHDPA 325

>pdb|3D83|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3NIZ|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Adp Bound Length = 311

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 40/216 (18%)
Query: 95  NNESSRDNEVK-NTSQGVKG------HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CW 143
           N    +D+++K    Q ++G      HR   R  + +NLL   D   KL DFG A     
Sbjct: 112 NKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI 171
Query: 144 THKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKD 202
             + +T+++ T  YR P+VL+GSK YSTS D+WS  CI  E+ TG  LF   +      D
Sbjct: 172 PVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT------D 225
Query: 203 EDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV-EKYDFNE 260
           +D L  +  +LG   PR                 +   ++ L  W      V EK  ++ 
Sbjct: 226 DDQLPKIFSILGTPNPR-----------------EWPQVQELPLWKQRTFQVFEKKPWSS 268
Query: 261 RD---AKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                 ++  D L  +L F P KR +A   ++HP+ 
Sbjct: 269 IIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304

>pdb|2QKR|A Chain A, Cryptosporidium Parvum Cyclin-Dependent Kinase Cgd5_2510 With Indirubin 3'-Monoxime Bound Length = 313

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 97/216 (44%), Gaps = 40/216 (18%)
Query: 95  NNESSRDNEVK-NTSQGVKG------HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CW 143
           N    +D+++K    Q ++G      HR   R  + +NLL   D   KL DFG A     
Sbjct: 112 NKTGLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGI 171
Query: 144 THKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKD 202
             + +T+++ T  YR P+VL+GSK YSTS D+WS  CI  E+ TG  LF   +      D
Sbjct: 172 PVRSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVT------D 225
Query: 203 EDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV-EKYDFNE 260
           +D L  +  +LG   PR                 +   ++ L  W      V EK  ++ 
Sbjct: 226 DDQLPKIFSILGTPNPR-----------------EWPQVQELPLWKQRTFQVFEKKPWSS 268
Query: 261 RD---AKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                 ++  D L  +L F P KR +A   ++HP+ 
Sbjct: 269 IIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYF 304

>pdb|2BAL|A Chain A, P38alpha Map Kinase Bound To Pyrazoloamine Length = 365

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 160 NLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 219
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 220 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 272
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 273 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 314

>pdb|3E92|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biaryl Amide Inhibitor Length = 371

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 166 NLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 225
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 226 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 278
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 279 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 320

>pdb|2BAQ|A Chain A, P38alpha Bound To Ro3201195 Length = 365

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 160 NLAVNEDXELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 219
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 220 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 272
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 273 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 314

>pdb|3D7Z|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Biphenyl Amide Inhibitor Length = 360

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3MPT|A Chain A, Crystal Structure Of P38 Kinase In Complex With A Pyrrole-2- Carboxamide Inhibitor Length = 371

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 166 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 225
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 226 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 278
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 279 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 320

>pdb|1OZ1|A Chain A, P38 Mitogen-Activated Kinase In Complex With 4-Azaindole Inhibitor Length = 372

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 167 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 226
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 227 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 279
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 280 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 321

>pdb|2GFS|A Chain A, P38 Kinase Crystal Structure In Complex With Ro3201195 Length = 372

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 167 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 226
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 227 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 279
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 280 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 321

>pdb|3NNX|A Chain A, Crystal Structure Of Phosphorylated P38 Alpha In Complex With Dp802 Length = 354

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3FI4|A Chain A, P38 Kinase Crystal Structure In Complex With Ro4499 Length = 372

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 167 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 226
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 227 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 279
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 280 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 321

>pdb|2FSL|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a+f327s) Activating Mutant Form-A Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 162 NLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 221
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 222 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 274
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 275 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>pdb|3HVC|A Chain A, Crystal Structure Of Human P38alpha Map Kinase Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 157 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 216
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 217 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 269
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 270 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 311

>pdb|1BL6|A Chain A, The Complex Structure Of The Map Kinase P38SB216995 Length = 379

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 174 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 233
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 234 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 286
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 287 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 328

>pdb|3OD6|X Chain X, Crystal Structure Of P38alpha Y323t Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3ODY|X Chain X, Crystal Structure Of P38alpha Y323q Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3GCU|A Chain A, Human P38 Map Kinase In Complex With Rl48 Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3ZSG|A Chain A, X-Ray Structure Of P38alpha Bound To Tak-715 Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 157 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 216
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 217 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 269
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 270 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 311

>pdb|3DT1|A Chain A, P38 Complexed With A Quinazoline Inhibitor Length = 383

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 178 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 237
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 238 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 290
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 291 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 332

>pdb|2NPQ|A Chain A, A Novel Lipid Binding Site In The P38 Alpha Map Kinase Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 162 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 221
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 222 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 274
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 275 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>pdb|2FSO|X Chain X, Mitogen Activated Protein Kinase P38alpha (D176a) Activating Mutant Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 162 NLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 221
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 222 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 274
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 275 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>pdb|3KQ7|A Chain A, Structure Of Human P38alpha With N-[4-Methyl-3-(6-{[2-(1- Methylpyrrolidin-2-Yl)ethyl]amino}pyridine-3- Amido)phenyl]- 2-(Morpholin-4-Yl)pyridine-4-Carboxamide Length = 380

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 175 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 234
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 235 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 287
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 288 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 329

>pdb|3K3J|A Chain A, P38alpha Bound To Novel Dfg-Out Compound Pf-00416121 Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 157 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 216
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 217 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 269
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 270 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 311

>pdb|2FST|X Chain X, Mitogen Activated Protein Kinase P38alpha (d176a+f327l) Activating Mutant Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 162 NLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 221
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 222 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 274
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 275 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 316

>pdb|3ODZ|X Chain X, Crystal Structure Of P38alpha Y323r Active Mutant Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|1DI9|A Chain A, The Structure Of P38 Mitogen-Activated Protein Kinase In Complex With 4-[3-Methylsulfanylanilino]-6,7- Dimethoxyquinazoline Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3OHT|A Chain A, Crystal Structure Of Salmo Salar P38alpha Length = 389

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 79/175 (45%), Gaps = 24/175 (13%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 184 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNMTVDIWSVGCIMA 243
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGGRYSRDFFNRHGDLRHI 240
           EL TG  LF      N       L  +M L G  P  +   +    +R++ N    L  +
Sbjct: 244 ELLTGRTLFPGTDHIN------QLQQIMRLTGTPPASVISRMPSHEARNYIN---SLPQM 294
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
            +  F     V +         A  +A D L  +L    +KR TA++ L+HP+ S
Sbjct: 295 PKRNF---ADVFI--------GANPLAVDLLEKMLVLDTDKRITASEALAHPYFS 338

>pdb|2BAJ|A Chain A, P38alpha Bound To Pyrazolourea Length = 365

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 160 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 219
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 220 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 272
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 273 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 314

>pdb|3TG1|A Chain A, Crystal Structure Of P38alpha In Complex With A Mapk Docking Partner Length = 380

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 175 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 234
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 235 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 287
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 288 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 329

>pdb|3HRB|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 154 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 213
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 214 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 266
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 267 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 308

>pdb|1CM8|A Chain A, Phosphorylated Map Kinase P38-Gamma Length = 367

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/176 (28%), Positives = 79/176 (44%), Gaps = 24/176 (13%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A     +    + TR YR PEV+L   +Y+ + D+WS  CI  
Sbjct: 158 NLAVNEDCELKILDFGLARQADSEMXGXVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMA 217
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E+ TG  LF         K  DHL  + E++        + G    +F  R         
Sbjct: 218 EMITGKTLF---------KGSDHLDQLKEIM-------KVTGTPPAEFVQRLQSDEAKNY 261
Query: 243 LRFWPMNKVLVEKYDFNE--RDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           ++  P     +EK DF     +A  +A + L  +L    E+R TA + L+HP+  +
Sbjct: 262 MKGLPE----LEKKDFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFES 313

>pdb|1BMK|A Chain A, The Complex Structure Of The Map Kinase P38SB218655 Length = 379

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 174 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 233
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 234 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 286
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 287 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 328

>pdb|1M7Q|A Chain A, Crystal Structure Of P38 Map Kinase In Complex With A Dihydroquinazolinone Inhibitor Length = 366

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 161 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 220
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 221 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 273
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 274 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 315

>pdb|2Y8O|A Chain A, Crystal Structure Of Human P38alpha Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 157 NLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 216
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 217 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 269
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 270 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 311

>pdb|1OVE|A Chain A, The Structure Of P38 Alpha In Complex With A Dihydroquinolinone Length = 366

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 161 NLAVNEDSELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 220
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 221 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 273
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 274 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 315

>pdb|3OEF|X Chain X, Crystal Structure Of Y323f Inactive Mutant Of P38alpha Map Kinase Length = 360

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3P4K|A Chain A, The Third Conformation Of P38a Map Kinase Observed In Phosphorylated P38a And In Solution Length = 370

Iteration: 1
 Score = 62.0 bits (149), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 165 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 224
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 225 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 277
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 278 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 319

>pdb|1LEW|A Chain A, Crystal Structure Of Map Kinase P38 Complexed To The Docking Site On Its Nuclear Substrate Mef2a Length = 360

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|1IAN|A Chain A, Human P38 Map Kinase Inhibitor Complex Length = 366

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 161 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 220
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 221 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 273
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 274 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 315

>pdb|3NNU|A Chain A, Crystal Structure Of P38 Alpha In Complex With Dp1376 Length = 354

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3K3I|A Chain A, P38alpha Bound To Novel Dgf-Out Compound Pf-00215955 Length = 350

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 153 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 212
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 213 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 265
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 266 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 307

>pdb|2OZA|B Chain B, Structure Of P38alpha Complex Length = 366

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 161 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 220
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 221 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 273
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 274 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 315

>pdb|2LGC|A Chain A, Joint Nmr And X-Ray Refinement Reveals The Structure Of A Novel Dibenzo[a,D]cycloheptenone InhibitorP38 MAP KINASE COMPLEX IN Solution Length = 359

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 160 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 219
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 220 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 272
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 273 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 314

>pdb|3S3I|A Chain A, P38 Kinase Crystal Structure In Complex With Small Molecule Inhibitor Length = 349

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 152 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 211
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 212 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 264
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 265 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 306

>pdb|1ZZL|A Chain A, Crystal Structure Of P38 With Triazolopyridine Length = 351

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 152 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 211
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 212 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 264
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 265 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 306

>pdb|3HEC|A Chain A, P38 In Complex With Imatinib Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 151 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 210
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 211 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 263
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 264 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 305

>pdb|2GTM|A Chain A, Mutated Mouse P38 Map Kinase Domain In Complex With Inhibitor Pg-892579 Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 151 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 210
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 211 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 263
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 264 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 305

>pdb|2PUU|A Chain A, Crystal Structure Of P38 Complex With 1-(5-Tert-Butyl-2-P- Tolyl-2h-Pyrazol-3-Yl)-3-[4-(6-Morpholin-4-Ylmethyl- Pyridin-3-Yl)naphthalen-1-Yl]urea Length = 348

Iteration: 1
 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 151 NLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 210
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 211 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 263
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 264 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 305

>pdb|2ZOQ|A Chain A, Structural Dissection Of Human Mitogen-Activated Kinase Erk1 Length = 382

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/177 (29%), Positives = 82/177 (46%), Gaps = 24/177 (13%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 174 NLLINTTCDLKICDFGLARIADPEHDHTGFLTEXVATRWYRAPEIMLNSKGYTKSIDIWS 233
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 234 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 277
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           ++    L+  P    +     F + D+K + D L  +L F P KR T  + L+HP++
Sbjct: 278 MKARNYLQSLPSKTKVAWAKLFPKSDSKAL-DLLDRMLTFNPNKRITVEEALAHPYL 333

>pdb|3MH2|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 61.2 bits (147), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 80/173 (46%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++D+G A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDYGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3PY3|A Chain A, Crystal Structure Of Phosphorylated P38alpha Map Kinase Length = 380

Iteration: 1
 Score = 60.8 bits (146), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  +    + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 175 NLAVNEDCELKILDFGLARHTDDEMXGXVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 234
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 235 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 287
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 288 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 329

>pdb|3GCP|A Chain A, Human P38 Map Kinase In Complex With Sb203580 Length = 360

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG    T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDSELKILDFGLCRHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|4EWQ|A Chain A, Human P38 Alpha Mapk In Complex With A Pyridazine Based Inhibitor Length = 383

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  +    + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 178 NLAVNEDCELKILDFGLARHTDDEMXGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 237
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 238 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 290
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 291 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 332

>pdb|1YWR|A Chain A, Crystal Structure Analysis Of Inactive P38 Kinase Domain In Complex With A Monocyclic Pyrazolone Inhibitor Length = 360

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  +    + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|1YW2|A Chain A, Mutated Mus Musculus P38 Kinase (Mp38) Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  +    + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3MTL|A Chain A, Crystal Structure Of The Pctaire1 Kinase In Complex With Ind E804 Length = 324

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 82/186 (44%), Gaps = 27/186 (14%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL     + KL DFG A       K + N++ T  YR P++LLGS  YST  D+W   
Sbjct: 129 QNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVG 188
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG--D 236
           CI +E+ATG  LF P S       E+ L  +  +LG  P +    G  S + F  +    
Sbjct: 189 CIFYEMATGRPLF-PGS-----TVEEQLHFIFRILG-TPTEETWPGILSNEEFKTYNYPK 241
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP-WMSA 295
            R    L   P             R   D AD L  +L F    R +A   + HP ++S 
Sbjct: 242 YRAEALLSHAP-------------RLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSL 288
Query: 296 GPQLRE 301
           G ++ +
Sbjct: 289 GERIHK 294

>pdb|3O8P|A Chain A, Conformational Plasticity Of P38 Map Kinase Dfg Motif Mutants In Response To Inhibitor Binding Length = 360

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++ FG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILGFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|2GHL|A Chain A, Mutant Mus Musculus P38 Kinase Domain In Complex With Inhibitor Pg-874743 Length = 348

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DFG A  T  +    + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 151 NLAVNEDCELKILDFGLARHTDDEMAGFVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 210
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 211 ELLTGRTLF---PGTDH---IDQLKLILRLVG-TPGAELLKKISSESARNYIQSLAQMPK 263
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 264 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 305

>pdb|3VUK|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M5 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|3SA0|A Chain A, Complex Of Erk2 With Norathyriol Length = 360

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 154 NLLLNTTXDLKIXDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 213
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 214 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNXIIN 257
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 258 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 314
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 315 -QYYDPS 320

>pdb|3VUI|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|3V3V|A Chain A, Structural And Functional Analysis Of Quercetagetin, A Natural Jnk1 Inhibitor Length = 379

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T ++ TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPEVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|4FV7|A Chain A, Crystal Structure Of The Erk2 Complexed With E94 Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 154 NLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 213
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 214 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNXIIN 257
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 258 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 314
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 315 -QYYDPS 320

>pdb|3NPC|A Chain A, Crystal Structure Of Jnk2 Complexed With Birb796 Length = 364

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/71 (42%), Positives = 41/71 (57%), Gaps = 4/71 (5%)
Query: 124 NLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N++   D   K++DFG    AC T+   T  + TR YR PEV+LG  Y+ + D+WS  CI
Sbjct: 156 NIVVKSDCTLKILDFGLARTAC-TNFMMTPYVVTRYYRAPEVILGMGYAANVDIWSVGCI 214
Query: 181 CFELATGDVLF 191
             EL  G V+F
Sbjct: 215 MGELVKGCVIF 225

>pdb|3GI3|A Chain A, Crystal Structure Of A N-Phenyl-N'-Naphthylurea Analog In Complex With P38 Map Kinase Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++DF  A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDFYLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3MH0|A Chain A, Mutagenesis Of P38 Map Kinase Eshtablishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++D G A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDAGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3GBZ|A Chain A, Structure Of The Cmgc Cdk Kinase From Giardia Lamblia Length = 329

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 49/87 (56%), Gaps = 10/87 (11%)
Query: 133 CKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
            K+ DFG A       +QFT++I T  YR PE+LLGS+ YSTS D+WS ACI  E+    
Sbjct: 176 LKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKT 235
Query: 189 VLFDPHSGDNYDKDEDHLALMMELLGM 215
            LF        D + D L  + E+LG+
Sbjct: 236 PLFPG------DSEIDQLFKIFEVLGL 256

>pdb|3VUH|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M3 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|3TEI|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 156 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 215
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 216 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 259
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP+++  
Sbjct: 260 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLA-- 316
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 317 -QYYDPS 322

>pdb|4H3Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 84/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 156 NLLLNTTSDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 215
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 216 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCGIN 259
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP+++  
Sbjct: 260 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLA-- 316
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 317 -QYYDPS 322

>pdb|3MH1|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++D G A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDGGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|3MH3|A Chain A, Mutagenesis Of P38 Map Kinase Establishes Key Roles Of Phe169 In Function And Structural Dynamics And Reveals A Novel Dfg-Out State Length = 360

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 79/173 (45%), Gaps = 20/173 (11%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           NL    D + K++D G A  T  + T  + TR YR PE++L    Y+ + D+WS  CI  
Sbjct: 155 NLAVNEDCELKILDRGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMA 214
Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           EL TG  LF    G ++    D L L++ L+G  P    L    S    N    L  + +
Sbjct: 215 ELLTGRTLF---PGTDHI---DQLKLILRLVG-TPGAELLKKISSESARNYIQSLTQMPK 267
Query: 243 LRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMS 294
           + F     V +         A  +A D L  +L    +KR TAAQ L+H + +
Sbjct: 268 MNF---ANVFI--------GANPLAVDLLEKMLVLDSDKRITAAQALAHAYFA 309

>pdb|2OJG|A Chain A, Crystal Structure Of Erk2 In Complex With N,n-dimethyl-4-(4- Phenyl-1h-pyrazol-3-yl)-1h-pyrrole-2-carboxamide Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 174 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 233
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 234 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 277
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 278 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 334
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 335 -QYYDPS 340

>pdb|1PME|A Chain A, Structure Of Penta Mutant Human Erk2 Map Kinase Complexed With A Specific Inhibitor Of Human P38 Map Kinase Length = 380

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 174 NLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 233
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 234 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 277
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 278 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 334
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 335 -QYYDPS 340

>pdb|4GSB|A Chain A, Monoclinic Crystal Form Of The Apo-Erk2 Length = 364

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|3E7O|A Chain A, Crystal Structure Of Jnk2 Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T+   T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 154 NIVVKSDCTLKILDFGLARTASTNFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 213
Query: 182 FELATGDVLF 191
            EL  G V+F
Sbjct: 214 GELVKGSVIF 223

>pdb|2Y9Q|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Mapk Docking Peptide Length = 362

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 156 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 215
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 216 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 259
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 260 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 316
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 317 -QYYDPS 322

>pdb|3VUG|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M2 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|3OZ6|A Chain A, Crystal Structure Of Mapk From Cryptosporidium Parvum, Cgd2_1960 Length = 388

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 48/162 (29%), Positives = 72/162 (44%), Gaps = 30/162 (18%)
Query: 148 FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDN-------- 198
            T+ + TR YR PE+LLGS KY+   D+WS  CI  E+  G  +F   S  N        
Sbjct: 187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSSTMNQLERIIGV 246
Query: 199 --YDKDEDHLALM----MELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL 252
             +  +ED  ++       ++  +  K+ +     RD F +  +L     L+  P     
Sbjct: 247 IDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNL----LLKINP----- 297
Query: 253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
             K D NE    +  D L  +L F P KR +A   L HP++S
Sbjct: 298 --KADCNE----EALDLLDKLLQFNPNKRISANDALKHPFVS 333

>pdb|3QYW|A Chain A, Crystal Structure Of Erk2 In Complex With An Inhibitor Length = 364

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|4FUX|A Chain A, Crystal Structure Of The Erk2 Complexed With E75 Length = 360

Iteration: 1
 Score = 58.2 bits (139), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 154 NLLLNTTXDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 213
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 214 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 257
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 258 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 314
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 315 -QYYDPS 320

>pdb|1WZY|A Chain A, Crystal Structure Of Human Erk2 Complexed With A Pyrazolopyridazine Derivative Length = 368

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 162 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 221
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 222 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 265
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 266 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 322
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 323 -QYYDPS 328

>pdb|1TVO|A Chain A, The Structure Of Erk2 In Complex With A Small Molecule Inhibitor Length = 368

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 154 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 213
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 214 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 257
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 258 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 314
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 315 -QYYDPS 320

>pdb|3VUD|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|1GOL|A Chain A, Coordinates Of Rat Map Kinase Erk2 With An Arginine Mutation At Position 52 Length = 364

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|3O71|A Chain A, Crystal Structure Of Erk2DCC PEPTIDE COMPLEX Length = 358

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 152 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 211
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 212 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 255
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 256 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 312
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 313 -QYYDPS 318

>pdb|3ZU7|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 159 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 218
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 219 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 262
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 263 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 319
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 320 -QYYDPS 325

>pdb|2Z7L|A Chain A, Unphosphorylated Mitogen Activated Protein Kinase Erk2 In Complex With (4-{[5-Carbamoyl-4-(3-Methylanilino)pyrimidin 2-Yl]amino}phenyl)acetic Acid Length = 366

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 160 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 219
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 220 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 263
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 264 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 320
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 321 -QYYDPS 326

>pdb|3C9W|A Chain A, Crystal Structure Of Erk-2 With Hypothemycin Covalently Bound Length = 357

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 151 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 210
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 211 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 254
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 255 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 311
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 312 -QYYDPS 317

>pdb|2FYS|B Chain B, Crystal Structure Of Erk2 Complex With Kim Peptide Derived From Mkp3 Length = 364

Iteration: 1
 Score = 57.8 bits (138), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|4FV6|A Chain A, Crystal Structure Of The Erk2 Complexed With E57 Length = 360

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 154 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 213
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 214 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 257
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 258 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 314
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 315 -QYYDPS 320

>pdb|4ERW|A Chain A, Cdk2 In Complex With Staurosporine Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 129 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYY 188
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 189 STAVDIWSLGCIFAEMVTRRALF 211

>pdb|2W96|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 53/178 (29%), Positives = 76/178 (42%), Gaps = 33/178 (18%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTND--IQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           +N+L       KL DFG A     Q   D  + T  YR PEVLL S Y+T  D+WS  CI
Sbjct: 141 ENILVTSGGTVKLADFGLARIYSYQMALDPVVVTLWYRAPEVLLQSTYATPVDMWSVGCI 200
Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGRYSRDFFNRHG 235
             E+     LF  +S      + D L  + +L+G+      PR ++L     R  F   G
Sbjct: 201 FAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSL----PRGAFPPRG 250
Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                      P+  V+ E         +  A  L+ +L F P KR +A + L H ++
Sbjct: 251 P---------RPVQSVVPEM-------EESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|3R63|A Chain A, Structure Of Erk2 (Spe) Mutant (S246e) Length = 358

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 85/189 (44%), Gaps = 31/189 (16%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 152 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 211
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMM--PRKIALGGRYSRDFFNRH 234
             CI  E+ +   +F    G +Y    +H      +LG++  P +  L    +    N  
Sbjct: 212 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGILGSPEQEDLNCIINLKARNYL 262
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
             L H  ++   P N++      F   D+K + D L  +L F P KR    Q L+HP++ 
Sbjct: 263 LSLPHKNKV---PWNRL------FPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE 312
Query: 295 AGPQLREPS 303
              Q  +PS
Sbjct: 313 ---QYYDPS 318

>pdb|2XRW|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 371

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 157 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 216
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 217 GEMIKGGVLF 226

>pdb|2GPH|A Chain A, Docking Motif Interactions In The Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/187 (30%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQF-TNDIQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F T  + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H      +LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNH------ILGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|1GZ8|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Inhibitor 2-Amino-6-(3'-Methyl-2'-Oxo)butoxypurine Length = 299

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGXKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|3GC9|A Chain A, The Structure Of P38beta C119s, C162s In Complex With A Dihydroquinazolinone Inhibitor Length = 370

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGD 188
           D + +++DFG A    ++ T  + TR YR PE++L    Y+ + D+WS  CI  EL  G 
Sbjct: 167 DSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGK 226
Query: 189 VLFDPHSGDNYDKDEDHLALMMELLG 214
            LF    G +Y    D L  +ME++G
Sbjct: 227 ALF---PGSDYI---DQLKRIMEVVG 246

>pdb|1UKH|A Chain A, Structural Basis For The Selective Inhibition Of Jnk1 By The Scaffolding Protein Jip1 And Sp600125 Length = 369

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|1OB3|A Chain A, Structure Of P. Falciparum Pfpk5 Length = 288

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + K+ DFG A       +++T++I T  YR P+VL+GSK YST+ D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGTPLFPGVS------EADQLMRIFRILG 218

>pdb|3PXF|A Chain A, Cdk2 In Complex With Two Molecules Of 8-Anilino-1-Naphthalene Sulfonate Length = 306

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 129 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 188
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 189 STAVDIWSLGCIFAEMVTRRALF 211

>pdb|3GC8|A Chain A, The Structure Of P38beta C162s In Complex With A Dihydroquinazolinone Length = 370

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGD 188
           D + +++DFG A    ++ T  + TR YR PE++L    Y+ + D+WS  CI  EL  G 
Sbjct: 167 DSELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGK 226
Query: 189 VLFDPHSGDNYDKDEDHLALMMELLG 214
            LF    G +Y    D L  +ME++G
Sbjct: 227 ALF---PGSDYI---DQLKRIMEVVG 246

>pdb|1VYW|A Chain A, Structure Of Cdk2CYCLIN A WITH PNU-292137 Length = 309

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 126 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 185
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 186 STAVDIWSLGCIFAEMVTRRALF 208

>pdb|3GP0|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 11 (p38 Beta) In Complex With Nilotinib Length = 348

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 47/86 (54%), Gaps = 7/86 (8%)
Query: 130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGD 188
           D + +++DFG A    ++ T  + TR YR PE++L    Y+ + D+WS  CI  EL  G 
Sbjct: 159 DCELRILDFGLARQADEEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLQGK 218
Query: 189 VLFDPHSGDNYDKDEDHLALMMELLG 214
            LF    G +Y    D L  +ME++G
Sbjct: 219 ALF---PGSDYI---DQLKRIMEVVG 238

>pdb|3EZR|A Chain A, Cdk-2 With Indazole Inhibitor 17 Bound At Its Active Site Length = 300

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 123 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 182
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 183 STAVDIWSLGCIFAEMVTRRALF 205

>pdb|3ZUV|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 364

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQFTND-IQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F  + + TR YR PE++L SK Y+ S D+WS
Sbjct: 158 NLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWS 217
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H+      LG++       G  S++  N   +
Sbjct: 218 VGCILAEMLSNRPIF---PGKHYLDQLNHI------LGIL-------GSPSQEDLNCIIN 261
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 262 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 318
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 319 -QYYDPS 324

>pdb|2ERK|A Chain A, Phosphorylated Map Kinase Erk2 Length = 365

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/187 (29%), Positives = 83/187 (44%), Gaps = 27/187 (14%)
Query: 124 NLLAAVDVQCKLVDFGNACWT-----HKQFTND-IQTRQYRCPEVLLGSK-YSTSADLWS 176
           NLL       K+ DFG A        H  F  + + TR YR PE++L SK Y+ S D+WS
Sbjct: 159 NLLLNTTCDLKICDFGLARVADPDHDHTGFLXEXVATRWYRAPEIMLNSKGYTKSIDIWS 218
Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI  E+ +   +F    G +Y    +H+      LG++       G  S++  N   +
Sbjct: 219 VGCILAEMLSNRPIF---PGKHYLDQLNHI------LGIL-------GSPSQEDLNCIIN 262
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
           L+    L   P    +     F   D+K + D L  +L F P KR    Q L+HP++   
Sbjct: 263 LKARNYLLSLPHKNKVPWNRLFPNADSKAL-DLLDKMLTFNPHKRIEVEQALAHPYLE-- 319
Query: 297 PQLREPS 303
            Q  +PS
Sbjct: 320 -QYYDPS 325

>pdb|3PJ8|A Chain A, Structure Of Cdk2 In Complex With A Pyrazolo[4,3-D]pyrimidine Bioisostere Of Roscovitine Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|1OIT|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-dependent Kinase Inhibitors Identified Through Structure-based Hybridisation Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|1GII|A Chain A, Human Cyclin Dependent Kinase 2 Complexed With The Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|3G33|A Chain A, Crystal Structure Of Cdk4CYCLIN D3 Length = 308

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 33/178 (18%)
Query: 123 KNLLAAVDVQCKLVDFGNA-CWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           +N+L       KL DFG A  ++++   T  + T  YR PEVLL S Y+T  D+WS  CI
Sbjct: 149 ENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCI 208
Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGRYSRDFFNRHG 235
             E+     LF  +S      + D L  + +L+G+      PR ++L     R  F   G
Sbjct: 209 FAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSL----PRGAFPPRG 258
Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                      P+  V+ E         +  A  L+ +L F P KR +A + L H ++
Sbjct: 259 P---------RPVQSVVPEM-------EESGAQLLLEMLTFNPHKRISAFRALQHSYL 300

>pdb|1PF8|A Chain A, Crystal Structure Of Human Cyclin-dependent Kinase 2 Complexed With A Nucleoside Inhibitor Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|2W17|A Chain A, Cdk2 In Complex With The Imidazole Pyrimidine Amide, Compound (S)-8b Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|1FIN|A Chain A, Cyclin A-Cyclin-Dependent Kinase 2 Complex Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|1OIR|A Chain A, Imidazopyridines: A Potent And Selective Class Of Cyclin-Dependent Kinase Inhibitors Identified Through Structure-Based Hybridisation Length = 299

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|1H01|A Chain A, Cdk2 In Complex With A Disubstituted 2, 4-Bis Anilino Pyrimidine Cdk4 Inhibitor Length = 298

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   R  + +NLL   +   KL DFG A       + +T+++ T  YR PE+LLG K Y
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|3TTJ|A Chain A, Crystal Structure Of Jnk3 Complexed With Cc-359, A Jnk Inhibitor For The Prevention Of Ischemia-Reperfusion Injury Length = 464

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 194 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 253
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 254 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 307
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 308 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|3FI3|A Chain A, Crystal Structure Of Jnk3 With Indazole Inhibitor, Sr-3737 Length = 364

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|1V0O|A Chain A, Structure Of P. Falciparum Pfpk5-Indirubin-5-Sulphonate Ligand Complex Length = 288

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + K+ DFG A       +++T+++ T  YR P+VL+GSK YST+ D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGTPLFPGVS------EADQLMRIFRILG 218

>pdb|3VUM|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M7 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS   I 
Sbjct: 156 NIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|3KVX|A Chain A, Jnk3 Bound To Aminopyrimidine Inhibitor, Sr-3562 Length = 364

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|1JNK|A Chain A, The C-Jun N-Terminal Kinase (Jnk3s) Complexed With Mgamp-Pnp Length = 423

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 194 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 253
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 254 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 307
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 308 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 361

>pdb|1V0B|A Chain A, Crystal Structure Of The T198a Mutant Of Pfpk5 Length = 288

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 53/96 (55%), Gaps = 10/96 (10%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + K+ DFG A       +++T+++ T  YR P+VL+GSK YST+ D+WS  
Sbjct: 129 QNLLINREGELKIADFGLARAFGIPVRKYTHEVVTLWYRAPDVLMGSKKYSTTIDIWSVG 188
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           CI  E+  G  LF   S      + D L  +  +LG
Sbjct: 189 CIFAEMVNGAPLFPGVS------EADQLMRIFRILG 218

>pdb|3VUL|A Chain A, Crystal Structure Of A Cysteine-deficient Mutant M1 In Map Kinase Jnk1 Length = 370

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS   I 
Sbjct: 156 NIVVKSDATLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGVIM 215
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 216 GEMIKGGVLF 225

>pdb|2R9S|A Chain A, C-Jun N-Terminal Kinase 3 With 3,5-Disubstituted Quinoline Inhibitor Length = 356

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 149 NIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 208
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 209 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 262
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 263 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|2OK1|A Chain A, Crystal Structure Of Jnk3 Bound To N-Benzyl-4-(4-(3- Chlorophenyl)-1h-Pyrazol-3-Yl)-1h-Pyrrole-2-Carboxamide Length = 365

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 157 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 216
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 217 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 270
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 271 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|3PTG|A Chain A, Design And Synthesis Of A Novel, Orally Efficacious Tri-Substituted Thiophene Based Jnk Inhibitor Length = 363

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|3OXI|A Chain A, Design And Synthesis Of Disubstituted Thiophene And Thiazole Based Inhibitors Of Jnk For The Treatment Of Neurodegenerative Diseases Length = 362

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 155 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 214
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 215 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 268
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 269 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 322

>pdb|2XS0|A Chain A, Linear Binding Motifs For Jnk And For Calcineurin Antagonistically Control The Nuclear Shuttling Of Nfat4 Length = 386

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T       + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 158 NIVVKSDCTLKILDFGLARTAGTSFMMVPFVVTRYYRAPEVILGMGYKENVDIWSVGCIM 217
Query: 182 FELATGDVLF 191
            E+  G VLF
Sbjct: 218 GEMIKGGVLF 227

>pdb|2O0U|A Chain A, Crystal Structure Of Human Jnk3 Complexed With N-{3-Cyano-6-[3-(1- Piperidinyl)propanoyl]-4,5,6,7-Tetrahydrothieno[2, 3-C]pyridin-2-Yl}- 1-Naphthalenecarboxamide Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|1PMN|A Chain A, Crystal Structure Of Jnk3 In Complex With An Imidazole- Pyrimidine Inhibitor Length = 364

Iteration: 1
 Score = 56.2 bits (134), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 157 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 216
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 217 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 270
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 271 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 324

>pdb|3FV8|A Chain A, Jnk3 Bound To Piperazine Amide Inhibitor, Sr2774 Length = 355

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2I6L|A Chain A, Crystal Structure Of Human Mitogen Activated Protein Kinase 6 (Mapk6) Length = 320

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/178 (28%), Positives = 79/178 (44%), Gaps = 37/178 (20%)
Query: 130 DVQCKLVDFGNA-----CWTHK-QFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICF 182
           D+  K+ DFG A      ++HK   +  + T+ YR P +LL  + Y+ + D+W+  CI  
Sbjct: 157 DLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFA 216
Query: 183 ELATGDVLF-DPHSGDNYDKDEDHLALM-----MELLGMMPRKIALGGRYSRDFFNRHGD 236
           E+ TG  LF   H  +      + + ++      ELL ++P  I        D    H  
Sbjct: 217 EMLTGKTLFAGAHELEQMQLILESIPVVHEEDRQELLSVIPVYI------RNDMTEPHK- 269
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                     P+ ++L          +++  DFL  IL F P  R TA + LSHP+MS
Sbjct: 270 ----------PLTQLL-------PGISREAVDFLEQILTFSPMDRLTAEEALSHPYMS 310

>pdb|2EXC|X Chain X, Inhibitor Complex Of Jnk3 Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 150 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 209
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 210 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 263
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 264 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|4H36|A Chain A, Crystal Structure Of Jnk3 In Complex With Atf2 Peptide Length = 356

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 150 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 209
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 210 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 263
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 264 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 317

>pdb|2B1P|A Chain A, Inhibitor Complex Of Jnk3 Length = 355

Iteration: 1
 Score = 55.8 bits (133), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 149 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 208
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 209 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 262
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 263 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 316

>pdb|3ELJ|A Chain A, Jnk1 Complexed With A Bis-Anilino-Pyrrolopyrimidine Inhibitor Length = 369

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + DLWS  CI 
Sbjct: 161 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIM 220
Query: 182 FELATGDVLF 191
            E+    +LF
Sbjct: 221 GEMVCHKILF 230

>pdb|3FI2|A Chain A, Crystal Structure Of Jnk3 With Amino-Pyrazole Inhibitor, Sr- 3451 Length = 353

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 75/175 (42%), Gaps = 10/175 (5%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDXTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGRYSRDFFNRHGDLRHI 240
            E+    +LF    G +Y    D    ++E LG   P  +       R++         +
Sbjct: 216 GEMVRHKILF---PGRDYI---DQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGL 269
Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
              + +P + +     + N+  A    D L  +L   P KR +    L HP+++ 
Sbjct: 270 TFPKLFP-DSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINV 323

>pdb|2W99|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 78/178 (43%), Gaps = 33/178 (18%)
Query: 123 KNLLAAVDVQCKLVDFGNA-CWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           +N+L       KL DFG A  ++++      + T  YR PEVLL S Y+T  D+WS  CI
Sbjct: 141 ENILVTSGGTVKLADFGLARIYSYQMALAPVVVTLWYRAPEVLLQSTYATPVDMWSVGCI 200
Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGRYSRDFFNRHG 235
             E+     LF  +S      + D L  + +L+G+      PR ++L     R  F   G
Sbjct: 201 FAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSL----PRGAFPPRG 250
Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                      P+  V+ E         +  A  L+ +L F P KR +A + L H ++
Sbjct: 251 P---------RPVQSVVPEM-------EESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|2IW8|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A F82h-L83v- H84d Mutant With An O6-Cyclohexylmethylguanine Inhibitor Length = 302

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|4EOJ|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With Atp Length = 302

Iteration: 1
 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|1OGU|A Chain A, Structure Of Human Thr160-phospho Cdk2/cyclin A Complexed With A 2-arylamino-4-cyclohexylmethyl-5-nitroso-6- aminopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|3PZE|A Chain A, Jnk1 In Complex With Inhibitor Length = 358

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A    T    T  + TR YR PEV+LG  Y  + DLWS  CI 
Sbjct: 150 NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDLWSVGCIM 209
Query: 182 FELATGDVLF 191
            E+    +LF
Sbjct: 210 GEMVCHKILF 219

>pdb|1H1P|A Chain A, Structure Of Human Thr160-Phospho Cdk2CYCLIN A COMPLEXED With The Inhibitor Nu2058 Length = 303

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 126 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 185
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 186 STAVDIWSLGCIFAEMVTRRALF 208

>pdb|2IW6|A Chain A, Structure Of Human Thr160-Phospho Cdk2-Cyclin A Complexed With A Bisanilinopyrimidine Inhibitor Length = 302

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|4EOK|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, K89d - Human Cyclin A3 Complex With The Inhibitor Nu6102 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 124 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 183
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 184 STAVDIWSLGCIFAEMVTRRALF 206

>pdb|1E9H|A Chain A, Thr 160 Phosphorylated Cdk2-Human Cyclin A3 Complex With The Inhibitor Indirubin-5-Sulphonate Bound Length = 297

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|3BHT|A Chain A, Structure Of Phosphorylated Thr160 Cdk2CYCLIN A IN COMPLEX WITH THE Inhibitor Meriolin 3 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 123 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 182
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 183 STAVDIWSLGCIFAEMVTRRALF 205

>pdb|4EOS|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 124 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 183
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 184 STAVDIWSLGCIFAEMVTRRALF 206

>pdb|4EOQ|A Chain A, Thr 160 Phosphorylated Cdk2 Wt - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|4BCQ|A Chain A, Structure Of Cdk2 In Complex With Cyclin A And A 2-amino-4- Heteroaryl-pyrimidine Inhibitor Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 124 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 183
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 184 STAVDIWSLGCIFAEMVTRRALF 206

>pdb|1QMZ|A Chain A, Phosphorylated Cdk2-Cyclyin A-Substrate Peptide Complex Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|4EOM|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With Atp Length = 301

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 125 HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 184
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 185 STAVDIWSLGCIFAEMVTRRALF 207

>pdb|1W98|A Chain A, The Structural Basis Of Cdk2 Activation By Cyclin E Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|3QHR|A Chain A, Structure Of A Pcdk2CYCLINA TRANSITION-State Mimic Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 123 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 182
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 183 STAVDIWSLGCIFAEMVTRRALF 205

>pdb|4I3Z|A Chain A, Structure Of Pcdk2CYCLINA BOUND TO ADP AND 2 MAGNESIUM IONS Length = 296

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|1JST|A Chain A, Phosphorylated Cyclin-Dependent Kinase-2 Bound To Cyclin A Length = 298

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 121 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 180
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 181 STAVDIWSLGCIFAEMVTRRALF 203

>pdb|2W9F|B Chain B, Crystal Structure Of Cdk4 In Complex With A D-Type Cyclin Length = 306

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 75/178 (42%), Gaps = 33/178 (18%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFT--NDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           +N+L       KL DFG A     Q      + T  YR PEVLL S Y+T  D+WS  CI
Sbjct: 141 ENILVTSGGTVKLADFGLARIYSYQMALFPVVVTLWYRAPEVLLQSTYATPVDMWSVGCI 200
Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-----MPRKIALGGRYSRDFFNRHG 235
             E+     LF  +S      + D L  + +L+G+      PR ++L     R  F   G
Sbjct: 201 FAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSL----PRGAFPPRG 250
Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                      P+  V+ E         +  A  L+ +L F P KR +A + L H ++
Sbjct: 251 P---------RPVQSVVPEM-------EESGAQLLLEMLTFNPHKRISAFRALQHSYL 292

>pdb|4EON|A Chain A, Thr 160 Phosphorylated Cdk2 H84s, Q85m, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 123 HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 182
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 183 STAVDIWSLGCIFAEMVTRRALF 205

>pdb|2JGZ|A Chain A, Crystal Structure Of Phospho-Cdk2 In Complex With Cyclin B Length = 289

Iteration: 1
 Score = 55.1 bits (131), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 122 HRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|4EOP|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 300

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 124 HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 183
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 184 STAVDIWSLGCIFAEMVTRRALF 206

>pdb|2G01|A Chain A, Pyrazoloquinolones As Novel, Selective Jnk1 Inhibitors Length = 370

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND--IQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A      F  +  + TR YR PEV+LG  Y  + DLWS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDLWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+    +LF
Sbjct: 216 GEMVCHKILF 225

>pdb|4EOO|A Chain A, Thr 160 Phosphorylated Cdk2 Q131e - Human Cyclin A3 Complex With Atp Length = 299

Iteration: 1
 Score = 55.1 bits (131), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 123 HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 182
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 183 STAVDIWSLGCIFAEMVTRRALF 205

>pdb|4EOI|A Chain A, Thr 160 Phosphorylated Cdk2 K89d, Q131e - Human Cyclin A3 Complex With The Inhibitor Ro3306 Length = 299

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 114 HRRPSRATR-KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKY- 168
           HR   R  + +NLL   +   KL DFG A       + + +++ T  YR PE+LLG KY 
Sbjct: 122 HRVLHRDLKPENLLINTEGAIKLADFGLARAFGVPVRTYXHEVVTLWYRAPEILLGCKYY 181
Query: 169 STSADLWSFACICFELATGDVLF 191
           ST+ D+WS  CI  E+ T   LF
Sbjct: 182 STAVDIWSLGCIFAEMVTRRALF 204

>pdb|4IC7|A Chain A, Crystal Structure Of The Erk5 Kinase Domain In Complex With An Mkk5 Binding Fragment Length = 442

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 100 RDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNA---CWT---HKQF-TNDI 152
           R  +  +++Q +    +PS     NLL   + + K+ DFG A   C +   H+ F T  +
Sbjct: 170 RGLKYMHSAQVIHRDLKPS-----NLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYV 224
Query: 153 QTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME 211
            TR YR PE++L   +Y+ + DLWS  CI  E+     LF    G NY      L L+M 
Sbjct: 225 ATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF---PGKNY---VHQLQLIMM 278
Query: 212 LLGM-MPRKI-ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEK-YDFNERDAKDMAD 268
           +LG   P  I A+G    R +                P   V  E  Y   +R A  +  
Sbjct: 279 VLGTPSPAVIQAVGAERVRAYIQ-----------SLPPRQPVPWETVYPGADRQALSL-- 325
Query: 269 FLVPILDFVPEKRPTAAQCLSHPWMS 294
            L  +L F P  R +AA  L HP+++
Sbjct: 326 -LGRMLRFEPSARISAAAALRHPFLA 350

>pdb|4B99|A Chain A, Crystal Structure Of Mapk7 (Erk5) With Inhibitor Length = 398

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 62/206 (30%), Positives = 91/206 (44%), Gaps = 36/206 (17%)
Query: 100 RDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFGNA---CWT---HKQF-TNDI 152
           R  +  +++Q +    +PS     NLL   + + K+ DFG A   C +   H+ F T  +
Sbjct: 169 RGLKYMHSAQVIHRDLKPS-----NLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYV 223
Query: 153 QTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME 211
            TR YR PE++L   +Y+ + DLWS  CI  E+     LF    G NY      L L+M 
Sbjct: 224 ATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLF---PGKNY---VHQLQLIMM 277
Query: 212 LLGM-MPRKI-ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEK-YDFNERDAKDMAD 268
           +LG   P  I A+G    R +                P   V  E  Y   +R A  +  
Sbjct: 278 VLGTPSPAVIQAVGAERVRAYIQ-----------SLPPRQPVPWETVYPGADRQALSL-- 324
Query: 269 FLVPILDFVPEKRPTAAQCLSHPWMS 294
            L  +L F P  R +AA  L HP+++
Sbjct: 325 -LGRMLRFEPSARISAAAALRHPFLA 349

>pdb|3O17|A Chain A, Crystal Structure Of Jnk1-Alpha1 Isoform Length = 370

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND--IQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N++   D   K++DFG A      F  +  + TR YR PEV+LG  Y  + D+WS  CI 
Sbjct: 156 NIVVKSDCTLKILDFGLARTAGTSFMMEPEVVTRYYRAPEVILGMGYKENVDIWSVGCIM 215
Query: 182 FELATGDVLF 191
            E+    +LF
Sbjct: 216 GEMVCHKILF 225

>pdb|4AAA|A Chain A, Crystal Structure Of The Human Cdkl2 Kinase Domain Length = 331

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 84/181 (46%), Gaps = 31/181 (17%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFA 178
           +N+L +     KL DFG A       + + +++ TR YR PE+L+G  KY  + D+W+  
Sbjct: 153 ENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIG 212
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDL 237
           C+  E+  G+ LF        D D D L  +M  LG ++PR         ++ FN++   
Sbjct: 213 CLVTEMFMGEPLFPG------DSDIDQLYHIMMCLGNLIPR--------HQELFNKNPVF 258
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPI----LDFVPEKRPTAAQCLSHPWM 293
             +R           +++ +  ER    +++ ++ +    L   P+KRP  A+ L H + 
Sbjct: 259 AGVRLPE--------IKEREPLERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFF 310
Query: 294 S 294
Sbjct: 311 Q 311

>pdb|3SAY|A Chain A, Crystal Structure Of Human Glycogen Synthase Kinase 3 Beta (Gsk3b) In Complex With Inhibitor 142 Length = 430

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 185 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 240
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 241 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 288
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 289 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 341
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 342 ---ELRDPNVKLPNGRDT 356

>pdb|1Q3D|A Chain A, Gsk-3 Beta Complexed With Staurosporine Length = 424

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 189 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 244
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 245 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 292
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 293 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 345
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 346 ---ELRDPNVKLPNGRDT 360

>pdb|1PYX|A Chain A, Gsk-3 Beta Complexed With Amp-Pnp Length = 422

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 187 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 242
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 243 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 290
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 291 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 343
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 344 ---ELRDPNVKLPNGRDT 358

>pdb|4ACC|A Chain A, Gsk3b In Complex With Inhibitor Length = 465

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 230 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 285
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 286 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 333
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 334 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 386
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 387 ---ELRDPNVKLPNGRDT 401

>pdb|1I09|A Chain A, Structure Of Glycogen Synthase Kinase-3 (Gsk3b) Length = 420

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 185 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 240
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 241 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 288
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 289 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 341
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 342 ---ELRDPNVKLPNGRDT 356

>pdb|1Q5K|A Chain A, Crystal Structure Of Glycogen Synthase Kinase 3 In Complexed With Inhibitor Length = 414

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 179 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 234
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 235 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 282
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 283 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 335
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 336 ---ELRDPNVKLPNGRDT 350

>pdb|3ZRK|A Chain A, Identification Of 2-(4-Pyridyl)thienopyridinones As Gsk-3beta Inhibitors Length = 371

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 163 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 218
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 219 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 266
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 267 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 319
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 320 ---ELRDPNVKLPNGRDT 334

>pdb|1R0E|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With 3-Indolyl-4- Arylmaleimide Inhibitor Length = 391

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 87/198 (43%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFTND------IQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ          I +R YR PE++ G+  Y++S D+
Sbjct: 156 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 211
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 212 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 259
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 260 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 312
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 313 ---ELRDPNVKLPNGRDT 327

>pdb|4DIT|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Imidazopyridine Inhibitor Length = 382

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 163 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 218
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 219 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTRE------QIREMNPNY 266
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 267 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 319
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 320 ---ELRDPNVKLPNGRDT 334

>pdb|4AFJ|A Chain A, 5-Aryl-4-Carboxamide-1,3-Oxazoles: Potent And Selective Gsk-3 Inhibitors Length = 367

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 159 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 214
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 215 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 262
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 263 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 315
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 316 ---ELRDPNVKLPNGRDT 330

>pdb|1GNG|A Chain A, Glycogen Synthase Kinase-3 Beta (Gsk3) Complex With Frattide Peptide Length = 378

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 170 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 225
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 226 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 273
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 274 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 326
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 327 ---ELRDPNVKLPNGRDT 341

>pdb|3GB2|A Chain A, Gsk3beta Inhibitor Complex Length = 353

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 155 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 210
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 211 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 258
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 259 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 311
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 312 ---ELRDPNVKLPNGRDT 326

>pdb|3F7Z|A Chain A, X-ray Co-crystal Structure Of Glycogen Synthase Kinase 3beta In Complex With An Inhibitor Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 152 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 207
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 208 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 255
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 256 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 308
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 309 ---ELRDPNVKLPNGRDT 323

>pdb|3ZDI|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide And Inhibitor 7d Length = 350

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 254
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 255 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 308 ---ELRDPNVKLPNGRDT 322

>pdb|2O5K|A Chain A, Crystal Structure Of Gsk3beta In Complex With A Benzoimidazol Inhibitor Length = 372

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 164 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 219
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 220 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 267
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 268 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 320
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 321 ---ELRDPNVKLPNGRDT 335

>pdb|3F88|A Chain A, Glycogen Synthase Kinase 3beta Inhibitor Complex Length = 349

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 254
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 255 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 308 ---ELRDPNVKLPNGRDT 322

>pdb|2OW3|A Chain A, Glycogen Synthase Kinase-3 Beta In Complex With Bis- (Indole)maleimide Pyridinophane Inhibitor Length = 352

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 254
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 255 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 308 ---ELRDPNVKLPNGRDT 322

>pdb|1UV5|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With 6-Bromoindirubin-3'-Oxime Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 254
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 255 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 308 ---ELRDPNVKLPNGRDT 322

>pdb|3SD0|A Chain A, Identification Of A Glycogen Synthase Kinase-3b Inhibitor That Attenuates Hyperactivity In Clock Mutant Mice Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 34/198 (17%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+        R+    +
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQI------REMNPNY 254
Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            + +   +++  P  KV      F  R   +       +L++ P  R T  +  +H +  
Sbjct: 255 TEFK-FPQIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD 307
Query: 295 AGPQLREPSMAAGEPRET 312
              +LR+P++     R+T
Sbjct: 308 ---ELRDPNVKLPNGRDT 322

>pdb|1O9U|A Chain A, Glycogen Synthase Kinase 3 Beta Complexed With Axin Peptide Length = 350

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 38/200 (19%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSXICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGGRYSRDFFN 232
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+    +   Y+   F 
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQIREMNPNYTEFAFP 260
Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                    +++  P  KV      F  R   +       +L++ P  R T  +  +H +
Sbjct: 261 ---------QIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSF 305
Query: 293 MSAGPQLREPSMAAGEPRET 312
                +LR+P++     R+T
Sbjct: 306 FD---ELRDPNVKLPNGRDT 322

>pdb|1H8F|A Chain A, Glycogen Synthase Kinase 3 Beta. Length = 352

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/200 (26%), Positives = 87/200 (43%), Gaps = 38/200 (19%)
Query: 123 KNLLAAVDVQC-KLVDFGNACWTHKQFT------NDIQTRQYRCPEVLLGSK-YSTSADL 174
           +NLL   D    KL DFG+A    KQ        + I +R YR PE++ G+  Y++S D+
Sbjct: 151 QNLLLDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDV 206
Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGGRYSRDFFN 232
           WS  C+  EL  G  +F   SG       D L  ++++LG   R+    +   Y+   F 
Sbjct: 207 WSAGCVLAELLLGQPIFPGDSG------VDQLVEIIKVLGTPTREQIREMNPNYTEFAFP 260
Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                    +++  P  KV      F  R   +       +L++ P  R T  +  +H +
Sbjct: 261 ---------QIKAHPWTKV------FRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSF 305
Query: 293 MSAGPQLREPSMAAGEPRET 312
                +LR+P++     R+T
Sbjct: 306 FD---ELRDPNVKLPNGRDT 322

>pdb|3EB0|A Chain A, Crystal Structure Of Cgd4_240 From Cryptosporidium Parvum In Complex With Indirubin E804 Length = 383

Iteration: 1
 Score = 50.1 bits (118), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 50/177 (28%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 123 KNLLA-AVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFA 178
           +NLL  + D   KL DFG+A      +     I +R YR PE++LG ++Y+ S DLWS  
Sbjct: 170 QNLLVNSKDNTLKLCDFGSAKKLIPSEPSVAXICSRFYRAPELMLGATEYTPSIDLWSIG 229
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK--IALGGRYSRDFFNRHGD 236
           C+  EL  G  LF   SG+      D L  +++++G   ++  I +   Y+         
Sbjct: 230 CVFGELILGKPLF---SGET---SIDQLVRIIQIMGTPTKEQMIRMNPHYT--------- 274
Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                 +RF P  K    +    E       D L  IL + P+ R    + ++HP+ 
Sbjct: 275 -----EVRF-PTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMAHPFF 325

>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1, Cgd3_920 Length = 486

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 47/166 (28%)
Query: 130 DVQCKLVDFG-NACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F       Y K+E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             + + +       DAKD+   +  +L F P  R TA QCL HPW+
Sbjct: 245 QWRTISD-------DAKDL---IRKMLTFHPSLRITATQCLEHPWI 280

>pdb|2F9G|A Chain A, Crystal Structure Of Fus3 Phosphorylated On Tyr182 Length = 353

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 61/219 (27%), Positives = 90/219 (41%), Gaps = 47/219 (21%)
Query: 97  ESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFG-----------NACWTH 145
           ++ R  +V + S  +    +PS     NLL   +   K+ DFG           N+  T 
Sbjct: 120 QTLRAVKVLHGSNVIHRDLKPS-----NLLINSNCDLKVCDFGLARIIDESAADNSEPTG 174
Query: 146 KQ--FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKD 202
           +Q   T  + TR YR PEV+L S KYS + D+WS  CI  EL     +F    G +Y   
Sbjct: 175 QQSGMTEXVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIF---PGRDY--- 228
Query: 203 EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI------RRLRFWPMNKVLVEKY 256
              L L+  ++G                 +   DLR I        ++  PM      + 
Sbjct: 229 RHQLLLIFGIIGTP---------------HSDNDLRCIESPRAREYIKSLPMYPAAPLEK 273
Query: 257 DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
            F   + K + D L  +L F P KR TA + L HP++  
Sbjct: 274 MFPRVNPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|3RP9|A Chain A, Crystal Structure Of The Apo Mapk From Toxoplasma Gondii, 25.M01780 Or Tgme49_007820 Length = 458

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/208 (26%), Positives = 81/208 (38%), Gaps = 49/208 (23%)
Query: 135 LVDFGNACWTHKQFTNDIQTRQYRCPE-VLLGSKYSTSADLWSFACICFELAT------- 186
           LV F +     +Q T  + TR YR PE +LL   Y+ + D+WS  CI  EL         
Sbjct: 227 LVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVA 286
Query: 187 ----------GDVLF----DPHSGDNYD----KDEDHLALMMELLGMMPRKIALGGRYSR 228
                     G   F    D  +G+++      + D L ++  +LG  P +  +      
Sbjct: 287 YHADRGPLFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILG-TPSEEDIEALEKE 345
Query: 229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNER---DAKDMADFLVPILDFVPEKRPTAA 285
           D           R +R +P      E  D  ER    + D    L  +L F P KR T  
Sbjct: 346 DA---------KRYIRIFPKR----EGTDLAERFPASSADAIHLLKRMLVFNPNKRITIN 392
Query: 286 QCLSHPWMSAGPQLREPSMAAGEPRETE 313
           +CL+HP+       +E  +A  E   TE
Sbjct: 393 ECLAHPF------FKEVRIAEVETNATE 414

>pdb|2B9F|A Chain A, Crystal Structure Of Non-Phosphorylated Fus3 Length = 353

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 63/222 (28%), Positives = 93/222 (41%), Gaps = 53/222 (23%)
Query: 97  ESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFG-----------NACWTH 145
           ++ R  +V + S  +    +PS     NLL   +   K+ DFG           N+  T 
Sbjct: 120 QTLRAVKVLHGSNVIHRDLKPS-----NLLINSNCDLKVCDFGLARIIDESAADNSEPTG 174
Query: 146 KQ--FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKD 202
           +Q   T  + TR YR PEV+L S KYS + D+WS  CI  EL     +F    G +Y   
Sbjct: 175 QQSGMTEYVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIF---PGRDY--- 228
Query: 203 EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR---------HIRRLRFWPMNKVLV 253
              L L+  ++G                 +   DLR         +I+ L  +P     +
Sbjct: 229 RHQLLLIFGIIGTP---------------HSDNDLRCIESPRAREYIKSLPMYPAAP--L 271
Query: 254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           EK  F   + K + D L  +L F P KR TA + L HP++  
Sbjct: 272 EKM-FPRVNPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex Length = 292

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 51/96 (53%), Gaps = 9/96 (9%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + KL DFG A       + ++ ++ T  YR P+VL G+K YSTS D+WS  
Sbjct: 130 QNLLINRNGELKLADFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           CI  ELA       P  G++ D   D L  +  LLG
Sbjct: 190 CIFAELANAARPLFP--GNDVD---DQLKRIFRLLG 220

>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium Parvum Calcium Dependent Protein Kinase In Complex With 3- Mb-Pp1 Length = 287

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 47/166 (28%)
Query: 130 DVQCKLVDFG-NACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F       Y K+E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             + + +       DAKD+   +  +L F P  R TA QCL HPW+
Sbjct: 245 QWRTISD-------DAKDL---IRKMLTFHPSLRITATQCLEHPWI 280

>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent Protein Kinase Cgd3_920 From Cryptosporidium Parvum Length = 286

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 47/166 (28%), Positives = 67/166 (40%), Gaps = 47/166 (28%)
Query: 130 DVQCKLVDFG-NACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           D   K++DFG + C+       D I T  Y  PEVL G+ Y    D+WS   I + L +G
Sbjct: 160 DCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDEKCDVWSAGVILYILLSG 218
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F       Y K+E  +   +E            G+Y+ D                 P
Sbjct: 219 TPPF-------YGKNEYDILKRVE-----------TGKYAFDL----------------P 244
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             + + +       DAKD+   +  +L F P  R TA QCL HPW+
Sbjct: 245 QWRTISD-------DAKDL---IRKMLTFHPSLRITATQCLEHPWI 280

>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By Roscovitine, Aloisine And Indirubin. Length = 292

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 53/97 (54%), Gaps = 11/97 (11%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFA 178
           +NLL   + + KL +FG A       + ++ ++ T  YR P+VL G+K YSTS D+WS  
Sbjct: 130 QNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAG 189
Query: 179 CICFELA-TGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           CI  ELA  G  LF    G++ D   D L  +  LLG
Sbjct: 190 CIFAELANAGRPLF---PGNDVD---DQLKRIFRLLG 220

>pdb|1UA2|A Chain A, Crystal Structure Of Human Cdk7 Length = 346

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 10/95 (10%)
Query: 124 NLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           NLL   +   KL DFG A      ++ + + + TR YR PE+L G++ Y    D+W+  C
Sbjct: 142 NLLLDENGVLKLADFGLAKSFGSPNRAYXHQVVTRWYRAPELLFGARMYGVGVDMWAVGC 201
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           I  EL    V F P      D D D L  + E LG
Sbjct: 202 ILAELLL-RVPFLPG-----DSDLDQLTRIFETLG 230

>pdb|4AGU|A Chain A, Crystal Structure Of The Human Cdkl1 Kinase Domain Length = 311

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 11/101 (10%)
Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLG-SKYSTSADLWSFA 178
           +N+L       KL DFG A         + +++ TR YR PE+L+G ++Y    D+W+  
Sbjct: 131 ENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIG 190
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPR 218
           C+  EL +G  L+   S      D D L L+ + LG ++PR
Sbjct: 191 CVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPR 225

>pdb|2B9H|A Chain A, Crystal Structure Of Fus3 With A Docking Motif From Ste7 Length = 353

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 62/222 (27%), Positives = 92/222 (41%), Gaps = 53/222 (23%)
Query: 97  ESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVDVQCKLVDFG-----------NACWTH 145
           ++ R  +V + S  +    +PS     NLL   +   K+ DFG           N+  T 
Sbjct: 120 QTLRAVKVLHGSNVIHRDLKPS-----NLLINSNCDLKVCDFGLARIIDESAADNSEPTG 174
Query: 146 KQ--FTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKD 202
           +Q      + TR YR PEV+L S KYS + D+WS  CI  EL     +F    G +Y   
Sbjct: 175 QQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIF---PGRDY--- 228
Query: 203 EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR---------HIRRLRFWPMNKVLV 253
              L L+  ++G                 +   DLR         +I+ L  +P     +
Sbjct: 229 RHQLLLIFGIIGTP---------------HSDNDLRCIESPRAREYIKSLPMYPAAP--L 271
Query: 254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           EK  F   + K + D L  +L F P KR TA + L HP++  
Sbjct: 272 EKM-FPRVNPKGI-DLLQRMLVFDPAKRITAKEALEHPYLQT 311

>pdb|4GS6|A Chain A, Irreversible Inhibition Of Tak1 Kinase By 5z-7-oxozeaenol Length = 315

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFEL 184
           LL A     K+ DFG AC      TN+  +  +  PEV  GS YS   D++S+  I +E+
Sbjct: 138 LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 197
Query: 185 ATGDVLFDPHSGDNY 199
            T    FD   G  +
Sbjct: 198 ITRRKPFDEIGGPAF 212

>pdb|2EVA|A Chain A, Structural Basis For The Interaction Of Tak1 Kinase With Its Activating Protein Tab1 Length = 307

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 36/75 (48%)
Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFEL 184
           LL A     K+ DFG AC      TN+  +  +  PEV  GS YS   D++S+  I +E+
Sbjct: 137 LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 196
Query: 185 ATGDVLFDPHSGDNY 199
            T    FD   G  +
Sbjct: 197 ITRRKPFDEIGGPAF 211

>pdb|3U87|A Chain A, Structure Of A Chimeric Construct Of Human Ck2alpha And Human Ck2alpha' In Complex With A Non-hydrolysable Atp-analogue Length = 349

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 87/184 (47%), Gaps = 33/184 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+    P +
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYFY--PVV 328
Query: 300 REPS 303
           +E S
Sbjct: 329 KEQS 332

>pdb|3N9X|A Chain A, Crystal Structure Of Map Kinase From Plasmodium Berghei, Pb000659.00.0 Length = 432

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 68/172 (39%), Gaps = 36/172 (20%)
Query: 146 KQFTNDIQTRQYRCPE-VLLGSKYSTSADLWSFACIC-----------------FELATG 187
           KQ T+ + TR YR PE +LL   Y+ S D+WS  CI                  F L  G
Sbjct: 206 KQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPG 265
Query: 188 DVLFDPHSGDNYDK------DEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
              F P S D   K      + D L ++  ++G            + D          I+
Sbjct: 266 SSCF-PLSPDRNSKKVHEKSNRDQLNIIFNIIGTP----------TEDDLKNINKPEVIK 314
Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            ++ +P  K +  K  +    + D  + L  +L F P KR T  Q L HP++
Sbjct: 315 YIKLFPHRKPINLKQKY-PSISDDGINLLESMLKFNPNKRITIDQALDHPYL 365

>pdb|1JWH|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 337

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|4DGL|C Chain C, Crystal Structure Of The Ck2 Tetrameric Holoenzyme Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|2ZJW|A Chain A, Crystal Structure Of Human Ck2 Alpha Complexed With Ellagic Acid Length = 340

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 175 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 231
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 232 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 286
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 287 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 329

>pdb|3Q9W|A Chain A, Crystal Structure Of Human Ck2 Alpha In Complex With Emodin At Ph 8.5 Length = 336

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3JUH|A Chain A, Crystal Structure Of A Mutant Of Human Protein Kinase Ck2alpha With Altered Cosubstrate Specificity Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|1NA7|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 Length = 329

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3NSZ|A Chain A, Human Ck2 Catalytic Domain In Complex With Amppn Length = 330

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 169 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 225
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 226 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 280
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 281 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323

>pdb|1PJK|A Chain A, Crystal Structure Of A C-terminal Deletion Mutant Of Human Protein Kinase Ck2 Catalytic Subunit Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 169 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 225
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 226 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 280
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 281 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 323

>pdb|3NIE|A Chain A, Crystal Structure Of Pf11_0147 Length = 429

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 71/183 (38%), Gaps = 58/183 (31%)
Query: 146 KQFTNDIQTRQYRCPE-VLLGSKYSTSADLWSFACIC-----------------FELATG 187
           KQ T+ + TR YR PE +LL   Y+ S D+WS  CI                  F L  G
Sbjct: 211 KQLTSHVVTRWYRAPELILLQENYTNSIDIWSTGCIFAELLNMMKSHINNPTNRFPLFPG 270
Query: 188 DVLFDPHSGDNYDK------DEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
              F P S D+  K      + D L ++  ++G  P +                DL+ I 
Sbjct: 271 SSCF-PLSPDHNSKKVHEKSNRDQLNIIFNVIGTPPEE----------------DLKCIT 313
Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMA-----------DFLVPILDFVPEKRPTAAQCLSH 290
           +       K+      F  RD  D++           D L  +L F  +KR T  + LSH
Sbjct: 314 KQEVIKYIKL------FPTRDGIDLSKKYSSISKEGIDLLESMLRFNAQKRITIDKALSH 367
Query: 291 PWM 293
           P++
Sbjct: 368 PYL 370

>pdb|3BQC|A Chain A, High Ph-Value Crystal Structure Of Emodin In Complex With The Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|2R7I|A Chain A, Crystal Structure Of Catalytic Subunit Of Protein Kinase Ck2 Length = 335

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3NGA|A Chain A, Human Ck2 Catalytic Domain In Complex With Cx-4945 Length = 333

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3Q04|A Chain A, Crystal Structure Of The Apo-Form Of Human Ck2 Alpha At Ph 8.5 Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 168 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 224
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 225 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 279
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 280 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 322

>pdb|3H30|A Chain A, Crystal Structure Of The Catalytic Subunit Of Human Protein Kinase Ck2 With 5,6-Dichloro-1-Beta-D- Ribofuranosylbenzimidazole Length = 334

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|3MB6|A Chain A, Human Ck2 Catalytic Domain In Complex With A Difurane Derivative Inhibitor (Cpa) Length = 331

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 82/174 (47%), Gaps = 31/174 (17%)
Query: 132 QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGD 188
           + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+   LA+  
Sbjct: 170 KLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM---LASMI 226
Query: 189 VLFDP--HSGDNYDKDEDHLALMMELLG-------MMPRKIALGGRYSRDFFNRHGDLRH 239
              +P  H  DNYD+    L  + ++LG       +    I L  R++ D   RH   R 
Sbjct: 227 FRKEPFFHGHDNYDQ----LVRIAKVLGTEDLYDYIDKYNIELDPRFN-DILGRHSRKRW 281
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
            R +     N+ LV         + +  DFL  +L +  + R TA + + HP+ 
Sbjct: 282 ERFVH--SENQHLV---------SPEALDFLDKLLRYDHQSRLTAREAMEHPYF 324

>pdb|2H34|A Chain A, Apoenzyme Crystal Structure Of The Tuberculosis SerineTHREONINE Kinase, Pkne Length = 309

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 7/88 (7%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTH----KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +N+L + D    LVDFG A  T      Q  N + T  Y  PE    S  +  AD+++  
Sbjct: 163 ENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYXAPERFSESHATYRADIYALT 222
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHL 206
           C+ +E  TG     P+ GD       H+
Sbjct: 223 CVLYECLTGS---PPYQGDQLSVXGAHI 247

>pdb|1S9I|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 2 (Mek2)in A Complex With Ligand And Mgatp Length = 354

Iteration: 1
 Score = 45.1 bits (105), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 145 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMAPERLQGTHYSVQSDIWSMGLSLV 204
Query: 183 ELATG 187
           ELA G
Sbjct: 205 ELAVG 209

>pdb|4AN2|A Chain A, Crystal Structures Of Human Mek1 With Carboxamide-Based Allosteric Inhibitor Xl518 (Gdc-0973), Or Related Analogs. Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +     +  N+ + TR Y  PE L G+ YS  +D+WS      
Sbjct: 138 NILVNSRGEIKLCDFGVSGQLIDEMANEFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 197
Query: 183 ELATG 187
           E+A G
Sbjct: 198 EMAVG 202

>pdb|3QBN|A Chain A, Structure Of Human Aurora A In Complex With A Diaminopyrimidine Length = 281

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 43/175 (24%), Positives = 63/175 (36%), Gaps = 51/175 (29%)
Query: 123 KNLLAAVDVQCKLVDFGNACWT-HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           +NLL     + K+ DFG +C     + T    T  Y  PE++ G  +    DLWS   +C
Sbjct: 138 ENLLLGSAGELKIADFGWSCHAPSSRRTTLSGTLDYLPPEMIEGRMHDEKVDLWSLGVLC 197
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +E   G     P   + Y +                        Y R           I 
Sbjct: 198 YEFLVGK---PPFEANTYQET-----------------------YKR-----------IS 220
Query: 242 RLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 221 RVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 263

>pdb|3QA8|A Chain A, Crystal Structure Of Inhibitor Of Kappa B Kinase Beta Length = 676

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K +D G  C      T  + T QY  PE+L   KY+ + D WSF  + FE  TG   F P
Sbjct: 172 KELDQGELC------TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP 225
Query: 194 H------SGDNYDKDEDHLALMMELLG 214
           +       G   +K  +H+ +  +L G
Sbjct: 226 NWQPVQWHGKVREKSNEHIVVYDDLTG 252

>pdb|3RZF|A Chain A, Crystal Structure Of Inhibitor Of Kappab Kinase Beta (I4122) Length = 677

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K +D G  C      T  + T QY  PE+L   KY+ + D WSF  + FE  TG   F P
Sbjct: 173 KELDQGELC------TEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLP 226
Query: 194 H------SGDNYDKDEDHLALMMELLG 214
           +       G   +K  +H+ +  +L G
Sbjct: 227 NWQPVQWHGKVREKSNEHIVVYDDLTG 253

>pdb|2JED|A Chain A, The Crystal Structure Of The Kinase Domain Of The Protein Kinase C Theta In Complex With Nvp-Xaa228 At 2.32a Resolution. Length = 352

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ------YRCPEVLLGSKYSTSADLWSF 177
           N+L   D   K+ DFG  C   +    D +T +      Y  PE+LLG KY+ S D WSF
Sbjct: 149 NILLDKDGHIKIADFG-MC--KENMLGDAKTNEFCGTPDYIAPEILLGQKYNHSVDWWSF 205
Query: 178 ACICFELATG 187
             + +E+  G
Sbjct: 206 GVLLYEMLIG 215

>pdb|3CIK|A Chain A, Human Grk2 In Complex With Gbetagamma Subunits Length = 689

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 381
Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMEL 212
           F+L  G   F  H + D ++ D   L + +EL
Sbjct: 382 FKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL 413

>pdb|3KRW|A Chain A, Human Grk2 In Complex With Gbetgamma Subunits And Balanol (Soak) Length = 688

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 321 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 380
Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMEL 212
           F+L  G   F  H + D ++ D   L + +EL
Sbjct: 381 FKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL 412

>pdb|2Y4I|C Chain C, Ksr2-Mek1 Heterodimer Length = 395

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 197 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 256
Query: 183 ELATG 187
           E+A G
Sbjct: 257 EMAVG 261

>pdb|2W4O|A Chain A, Crystal Structure Of Human Camk4 In Complex With 4-Amino( Sulfamoyl-Phenylamino)-Triazole-Carbothioic Acid (2,6- Difluoro-Phenyl)-Amide) Length = 349

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/181 (25%), Positives = 69/181 (38%), Gaps = 54/181 (29%)
Query: 123 KNLLAAV---DVQCKLVDFG-NACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSF 177
           +NLL A    D   K+ DFG +    H+     +  T  Y  PE+L G  Y    D+WS 
Sbjct: 177 ENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSV 236
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L  G   F+P                                    F++  GD 
Sbjct: 237 GIITYILLCG---FEP------------------------------------FYDERGDQ 257
Query: 238 RHIRRLRFWPMN---KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              RR+    +N     +   +D    +AKD+   L+ +LD  P+KR T  Q L HPW++
Sbjct: 258 FMFRRI----LNCEYYFISPWWDEVSLNAKDLVRKLI-VLD--PKKRLTTFQALQHPWVT 310
Query: 295 A 295
Sbjct: 311 G 311

>pdb|1OMW|A Chain A, Crystal Structure Of The Complex Between G Protein-Coupled Receptor Kinase 2 And Heterotrimeric G Protein Beta 1 And Gamma 2 Subunits Length = 689

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 381
Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMEL 212
           F+L  G   F  H + D ++ D   L + +EL
Sbjct: 382 FKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL 413

>pdb|3PSC|A Chain A, Bovine Grk2 In Complex With Gbetagamma Subunits Length = 695

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC ++ K+    + T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 381
Query: 182 FELATGDVLFDPH-SGDNYDKDEDHLALMMEL 212
           F+L  G   F  H + D ++ D   L + +EL
Sbjct: 382 FKLLRGHSPFRQHKTKDKHEIDRMTLTMAVEL 413

>pdb|3LM0|A Chain A, Crystal Structure Of Human SerineTHREONINE KINASE 17B (STK17B) Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 62/166 (37%), Gaps = 54/166 (32%)
Query: 134 KLVDFG------NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           K+VDFG      +AC    +    + T +Y  PE+L     +T+ D+W+   I + L T 
Sbjct: 174 KIVDFGMSRKIGHAC----ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH 229
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
                P  G+  D  E +L +             +   YS + F+    L          
Sbjct: 230 T---SPFVGE--DNQETYLNIS-----------QVNVDYSEETFSSVSQLA--------- 264
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                               DF+  +L   PEKRPTA  CLSH W+
Sbjct: 265 -------------------TDFIQSLLVKNPEKRPTAEICLSHSWL 291

>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: Wild Type Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 61/202 (30%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKY-STSADLWSF 177
           +NLL   D+  K+ DFG +      F N + T      Y  PE+  G KY     D+WS 
Sbjct: 142 ENLLLDADMNIKIADFGFS--NEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSL 199
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L +G + FD   G N          + EL     R+  L G+Y   F+      
Sbjct: 200 GVILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM----- 236
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                                    + D  + L   L   P KR T  Q +   WM+ G 
Sbjct: 237 -------------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGH 271
Query: 298 Q------LREPSMAAGEPRETE 313
           +        EP     +PR TE
Sbjct: 272 EDDELKPYVEPLPDYKDPRRTE 293

>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: K82r Mutant Length = 327

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 61/202 (30%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKY-STSADLWSF 177
           +NLL   D+  K+ DFG +      F N + T      Y  PE+  G KY     D+WS 
Sbjct: 142 ENLLLDADMNIKIADFGFS--NEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSL 199
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L +G + FD   G N          + EL     R+  L G+Y   F+      
Sbjct: 200 GVILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM----- 236
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                                    + D  + L   L   P KR T  Q +   WM+ G 
Sbjct: 237 -------------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGH 271
Query: 298 Q------LREPSMAAGEPRETE 313
           +        EP     +PR TE
Sbjct: 272 EDDELKPYVEPLPDYKDPRRTE 293

>pdb|1XJD|A Chain A, Crystal Structure Of Pkc-Theta Complexed With Staurosporine At 2a Resolution Length = 345

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 9/70 (12%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ------YRCPEVLLGSKYSTSADLWSF 177
           N+L   D   K+ DFG  C   +    D +T        Y  PE+LLG KY+ S D WSF
Sbjct: 148 NILLDKDGHIKIADFG-MC--KENMLGDAKTNXFCGTPDYIAPEILLGQKYNHSVDWWSF 204
Query: 178 ACICFELATG 187
             + +E+  G
Sbjct: 205 GVLLYEMLIG 214

>pdb|3ORN|A Chain A, Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In Complex With Ch4987655 And Mgamp-Pnp Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194
Query: 183 ELATG 187
           E+A G
Sbjct: 195 EMAVG 199

>pdb|3EQC|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Ternary Complex With Compound 1, Atp-Gs And Mg2p Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 162 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 221
Query: 183 ELATG 187
           E+A G
Sbjct: 222 EMAVG 226

>pdb|2BMC|A Chain A, Aurora-2 T287d T288d Complexed With Pha-680632 Length = 306

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 51/175 (29%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           +NLL     + K+ DFG +        +D+  T  Y  PE++ G  +    DLWS   +C
Sbjct: 163 ENLLLGSAGELKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLC 222
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +E   G     P   + Y +                        Y R           I 
Sbjct: 223 YEFLVGK---PPFEANTYQET-----------------------YKR-----------IS 245
Query: 242 RLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 246 RVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 288

>pdb|3RGF|A Chain A, Crystal Structure Of Human Cdk8CYCC Length = 405

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/163 (23%), Positives = 67/163 (41%), Gaps = 34/163 (20%)
Query: 152 IQTRQYRCPEVLLGSKYSTSA-DLWSFACICFELATGDVLF-----DPHSGDNYDKDEDH 205
           + T  YR PE+LLG+++ T A D+W+  CI  EL T + +F     D  + + Y  D+  
Sbjct: 196 VVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQ-- 253
Query: 206 LALMMELLGM-----------MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVE 254
           L  +  ++G            MP    L   + R+ +     ++++ + +  P +K    
Sbjct: 254 LDRIFNVMGFPADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF-- 311
Query: 255 KYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                          L  +L   P KR T+ Q +  P+    P
Sbjct: 312 -------------HLLQKLLTMDPIKRITSEQAMQDPYFLEDP 341

>pdb|2Z7Q|A Chain A, Crystal Structure Of The N-Terminal Kinase Domain Of Human Rsk-1 Bound To Amp-Pcp Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 123 KNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +N+L   +   KL DFG    A    K+  +   T +Y  PEV+    +S SAD WS+  
Sbjct: 159 ENILLDEEGHIKLTDFGLSKEAIDHEKKAYSFCGTVEYMAPEVVNRQGHSHSADWWSYGV 218
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM 215
           + FE+ TG +   P  G   D+ E    ++   LGM
Sbjct: 219 LMFEMLTGSL---PFQGK--DRKETMTLILKAKLGM 249

>pdb|2P55|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 333

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194
Query: 183 ELATG 187
           E+A G
Sbjct: 195 EMAVG 199

>pdb|1S9J|A Chain A, X-Ray Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek1) In A Complex With Ligand And Mgatp Length = 341

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194
Query: 183 ELATG 187
           E+A G
Sbjct: 195 EMAVG 199

>pdb|3R21|A Chain A, Design, Synthesis, And Biological Evaluation Of Pyrazolopyridine- Sulfonamides As Potent Multiple-Mitotic Kinase (Mmk) Inhibitors (Part I) Length = 271

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 54/225 (24%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G    E Q  S  + +  ++   E+ N        R   R  + +NLL     +
Sbjct: 90  LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 149
Query: 133 CKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG +        +D+  T  Y  PE++ G  +    DLWS   +C+E   G    
Sbjct: 150 LKIADFGWSVHAPSSRRDDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK--- 206
Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WPMNK 250
            P   + Y +                        Y R           I R+ F +P   
Sbjct: 207 PPFEANTYQET-----------------------YKR-----------ISRVEFTFP--- 229
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                 DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 230 ------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 265

>pdb|3MBL|A Chain A, Crystal Structure Of The Human Mitogen-Activated Protein Kinase Kinase 1 (Mek 1) In Complex With Ligand And Mgadp Length = 328

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194
Query: 183 ELATG 187
           E+A G
Sbjct: 195 EMAVG 199

>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY KINASES BY Mimicking Host Substrates Length = 319

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/202 (25%), Positives = 71/202 (35%), Gaps = 61/202 (30%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKY-STSADLWSF 177
           +NLL   D+  K+ DFG +      F N + T      Y  PE+  G KY     D+WS 
Sbjct: 135 ENLLLDADMNIKIADFGFS--NEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSL 192
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L +G + FD   G N          + EL     R+  L G+Y   F+      
Sbjct: 193 GVILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM----- 229
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                                    + D  + L   L   P KR T  Q +   WM+ G 
Sbjct: 230 -------------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGH 264
Query: 298 Q------LREPSMAAGEPRETE 313
           +        EP     +PR TE
Sbjct: 265 EDDELKPYVEPLPDYKDPRRTE 286

>pdb|3DV3|A Chain A, Mek1 With Pf-04622664 Bound Length = 322

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194
Query: 183 ELATG 187
           E+A G
Sbjct: 195 EMAVG 199

>pdb|3SLS|A Chain A, Crystal Structure Of Human Mek-1 Kinase In Complex With Ucb1353770 And Amppnp Length = 304

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 154 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 213
Query: 183 ELATG 187
           E+A G
Sbjct: 214 EMAVG 218

>pdb|3LIJ|A Chain A, Crystal Structure Of Full Length Cpcdpk3 (Cgd5_820) In Complex With Ca2+ And Amppnp Length = 494

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 65/170 (38%), Gaps = 55/170 (32%)
Query: 130 DVQCKLVDFG-NACW-THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           D   K+VDFG +A +   K+    + T  Y  PEVL   KY    D+WS   I F L  G
Sbjct: 175 DALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVL-RKKYDEKCDVWSIGVILFILLAG 233
Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              + P  G     D++ L           RK+  G                        
Sbjct: 234 ---YPPFGGQT---DQEIL-----------RKVEKG------------------------ 252
Query: 248 MNKVLVEKYDFNERDAKDMA----DFLVPILDFVPEKRPTAAQCLSHPWM 293
                  KY F+  + K+++    D +  +L F  ++R +A Q L HPW+
Sbjct: 253 -------KYTFDSPEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWI 295

>pdb|3PWY|A Chain A, Crystal Structure Of An Extender (Spd28345)-Modified Human Pdk1 Complex 2 Length = 311

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 123 KNLLAAVDVQCKLVDFGNACWT-----HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N+L   D+  ++ DFG A          +  + + T QY  PE+L     S S+DLW+ 
Sbjct: 161 ENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSASKSSDLWAL 220
Query: 178 ACICFELATG 187
            CI ++L  G
Sbjct: 221 GCIIYQLVAG 230

>pdb|3G51|A Chain A, Structural Diversity Of The Active Conformation Of The N- Terminal Kinase Domain Of P90 Ribosomal S6 Kinase 2 Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 123 KNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +N+L   +   KL DFG    +    K+  +   T +Y  PEV+    ++ SAD WSF  
Sbjct: 155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 214
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM 215
           + FE+ TG +   P  G   D+ E    ++   LGM
Sbjct: 215 LMFEMLTGTL---PFQGK--DRKETMTMILKAKLGM 245

>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant Length = 327

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 52/202 (25%), Positives = 73/202 (36%), Gaps = 61/202 (30%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKY-STSADLWSF 177
           +NLL   D+  K+ DFG +      F N + T      Y  PE+  G KY     D+WS 
Sbjct: 142 ENLLLDADMNIKIADFGFS--NEFTFGNKLDTFCGSPPYAAPELFQGKKYDGPEVDVWSL 199
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L +G + FD   G N          + EL     R+  L G+Y   F+      
Sbjct: 200 GVILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM----- 236
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                                    + D  + L   L   P KR T  Q +   WM+ G 
Sbjct: 237 -------------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGH 271
Query: 298 QLRE--PSMA----AGEPRETE 313
           +  E  P +A      +PR TE
Sbjct: 272 EDDELKPYVAPLPDYKDPRRTE 293

>pdb|3LAU|A Chain A, Crystal Structure Of Aurora2 Kinase In Complex With A Gsk3beta Inhibitor Length = 287

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 54/225 (24%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G    E Q  S  + +  ++   E+ N        R   R  + +NLL     +
Sbjct: 87  LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 146
Query: 133 CKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG +         D+  T  Y  PE++ G  +    DLWS   +C+E   G    
Sbjct: 147 LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK--- 203
Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WPMNK 250
            P   + Y +                        Y R           I R+ F +P   
Sbjct: 204 PPFEANTYQET-----------------------YKR-----------ISRVEFTFP--- 226
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                 DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 227 ------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 262

>pdb|2C6E|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With A 5-Aminopyrimidinyl Quinazoline Inhibitor Length = 283

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 62/175 (35%), Gaps = 51/175 (29%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           +NLL     + K+ DFG +         D+  T  Y  PE++ G  +    DLWS   +C
Sbjct: 142 ENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLC 201
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +E   G     P   + Y +                        Y R           I 
Sbjct: 202 YEFLVGK---PPFEANTYQET-----------------------YKR-----------IS 224
Query: 242 RLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 225 RVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 267

>pdb|4EL9|A Chain A, Structure Of N-Terminal Kinase Domain Of Rsk2 With Afzelin Length = 305

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 123 KNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +N+L   +   KL DFG    +    K+  +   T +Y  PEV+    ++ SAD WSF  
Sbjct: 156 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 215
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM 215
           + FE+ TG +   P  G   D+ E    ++   LGM
Sbjct: 216 LMFEMLTGTL---PFQGK--DRKETMTMILKAKLGM 246

>pdb|3UBD|A Chain A, Structure Of N-Terminal Domain Of Rsk2 Kinase In Complex With Flavonoid Glycoside Sl0101 Length = 304

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 46/96 (47%), Gaps = 8/96 (8%)
Query: 123 KNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           +N+L   +   KL DFG    +    K+  +   T +Y  PEV+    ++ SAD WSF  
Sbjct: 155 ENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGV 214
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM 215
           + FE+ TG +   P  G   D+ E    ++   LGM
Sbjct: 215 LMFEMLTGTL---PFQGK--DRKETMTMILKAKLGM 245

>pdb|2J4Z|A Chain A, Structure Of Aurora-2 In Complex With Pha-680626 Length = 306

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 57/178 (32%)
Query: 123 KNLLAAVDVQCKLVDFGNACWT----HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +NLL     + K+ DFG   W+      + T    T  Y  PE++ G  +    DLWS  
Sbjct: 163 ENLLLGSAGELKIADFG---WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLG 219
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            +C+E   G     P   + Y +                        Y R          
Sbjct: 220 VLCYEFLVGK---PPFEANTYQET-----------------------YKR---------- 243
Query: 239 HIRRLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
            I R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 244 -ISRVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 288

>pdb|3FDN|A Chain A, Structure-Based Drug Design Of Novel Aurora Kinase A Inhibitors: Structure Basis For Potency And Specificity Length = 279

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 42/175 (24%), Positives = 62/175 (35%), Gaps = 51/175 (29%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           +NLL     + K+ DFG +         D+  T  Y  PE++ G  +    DLWS   +C
Sbjct: 138 ENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLC 197
Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +E   G     P   + Y +                        Y R           I 
Sbjct: 198 YEFLVGK---PPFEANTYQET-----------------------YKR-----------IS 220
Query: 242 RLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 221 RVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 263

>pdb|2C6D|A Chain A, Aurora A Kinase Activated Mutant (T287d) In Complex With Adpnp Length = 275

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 54/225 (24%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G    E Q  S  + +  ++   E+ N        R   R  + +NLL     +
Sbjct: 87  LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 146
Query: 133 CKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG +         D+  T  Y  PE++ G  +    DLWS   +C+E   G    
Sbjct: 147 LKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK--- 203
Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WPMNK 250
            P   + Y +                        Y R           I R+ F +P   
Sbjct: 204 PPFEANTYQET-----------------------YKR-----------ISRVEFTFP--- 226
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                 DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 227 ------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 262

>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r, T208e Double Mutant Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 69/200 (34%), Gaps = 57/200 (28%)
Query: 123 KNLLAAVDVQCKLVDFG--NACWTHKQFTNDIQTRQYRCPEVLLGSKY-STSADLWSFAC 179
           +NLL   D+  K+ DFG  N      +      +  Y  PE+  G KY     D+WS   
Sbjct: 142 ENLLLDADMNIKIADFGFSNEFTFGNKLDEFCGSPPYAAPELFQGKKYDGPEVDVWSLGV 201
Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I + L +G + FD   G N          + EL     R+  L G+Y   F+        
Sbjct: 202 ILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM------- 236
Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ- 298
                                  + D  + L   L   P KR T  Q +   WM+ G + 
Sbjct: 237 -----------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGHED 273
Query: 299 -----LREPSMAAGEPRETE 313
                  EP     +PR TE
Sbjct: 274 DELKPYVEPLPDYKDPRRTE 293

>pdb|3BHY|A Chain A, Crystal Structure Of Human Death Associated Protein Kinase 3 (Dapk3) In Complex With A Beta-Carboline Ligand Length = 283

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/178 (25%), Positives = 64/178 (35%), Gaps = 70/178 (39%)
Query: 132 QCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT 186
           + KL+DFG A   HK     +F N   T ++  PE++        AD+WS   I + L +
Sbjct: 150 RIKLIDFGIA---HKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLS 206
Query: 187 GDVLFDPH---------SGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
           G   F            S  NYD DE++ +   EL              ++DF       
Sbjct: 207 GASPFLGETKQETLTNISAVNYDFDEEYFSNTSEL--------------AKDF------- 245
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
             IRRL                    KD            P++R T AQ L H W+ A
Sbjct: 246 --IRRLL------------------VKD------------PKRRMTIAQSLEHSWIKA 271

>pdb|1MQ4|A Chain A, Crystal Structure Of Aurora-A Protein Kinase Length = 272

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 79/225 (35%), Gaps = 54/225 (24%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G    E Q  S  + +  ++   E+ N        R   R  + +NLL     +
Sbjct: 91  LEYAPLGTVYRELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 150
Query: 133 CKLVDFGNACWT-HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG +      + T    T  Y  PE++ G  +    DLWS   +C+E   G    
Sbjct: 151 LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK--- 207
Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WPMNK 250
            P   + Y +                        Y R           I R+ F +P   
Sbjct: 208 PPFEANTYQET-----------------------YKR-----------ISRVEFTFP--- 230
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                 DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 231 ------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 266

>pdb|1MUO|A Chain A, Crystal Structure Of Aurora-2, An Oncogenic Serine- Threonine Kinase Length = 297

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 57/178 (32%)
Query: 123 KNLLAAVDVQCKLVDFGNACWT----HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +NLL     + K+ DFG   W+      + T    T  Y  PE++ G  +    DLWS  
Sbjct: 154 ENLLLGSAGELKIADFG---WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLG 210
Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            +C+E   G     P   + Y +                        Y R          
Sbjct: 211 VLCYEFLVGK---PPFEANTYQET-----------------------YKR---------- 234
Query: 239 HIRRLRF-WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
            I R+ F +P         DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 235 -ISRVEFTFP---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 279

>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1: T208aS212A INACTIVE DOUBLE MUTANT Length = 327

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 70/202 (34%), Gaps = 61/202 (30%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKY-STSADLWSF 177
           +NLL   D+  K+ DFG +      F N +        Y  PE+  G KY     D+WS 
Sbjct: 142 ENLLLDADMNIKIADFGFS--NEFTFGNKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSL 199
Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I + L +G + FD   G N          + EL     R+  L G+Y   F+      
Sbjct: 200 GVILYTLVSGSLPFD---GQN----------LKEL-----RERVLRGKYRIPFYM----- 236
Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                                    + D  + L   L   P KR T  Q +   WM+ G 
Sbjct: 237 -------------------------STDCENLLKKFLILNPSKRGTLEQIMKDRWMNVGH 271
Query: 298 Q------LREPSMAAGEPRETE 313
           +        EP     +PR TE
Sbjct: 272 EDDELKPYVEPLPDYKDPRRTE 293

>pdb|3A7F|A Chain A, Human Mst3 Kinase Length = 303

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 35/164 (21%)
Query: 124 NLLAAVDVQCKLVDFGNAC-WTHKQFTND--IQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           N+L +   + KL DFG A   T  Q   +  + T  +  PEV+  S Y + AD+WS    
Sbjct: 149 NVLLSEHGEVKLADFGVAGQLTDTQIKRNXFVGTPFWMAPEVIKQSAYDSKADIWSLGIT 208
Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK--IALGGRYSRDF-------F 231
             ELA G+    PHS       E H    M++L ++P+     L G YS+          
Sbjct: 209 AIELARGE---PPHS-------ELH---PMKVLFLIPKNNPPTLEGNYSKPLKEFVEACL 255
Query: 232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILD 275
           N+    R        P  K L+ K+ F  R+AK  + +L  ++D
Sbjct: 256 NKEPSFR--------PTAKELL-KHKFILRNAKKTS-YLTELID 289

>pdb|2WTW|A Chain A, Aurora-A Inhibitor Structure (2nd Crystal Form) Length = 285

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 52/228 (22%), Positives = 81/228 (35%), Gaps = 60/228 (26%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G   +E Q  S  + +  ++   E+ N        R   R  + +NLL     +
Sbjct: 92  LEYAPRGEVYKELQKLSKFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGE 151
Query: 133 CKLVDFGNACWT----HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGD 188
            K+ DFG   W+      + T    T  Y  PE++ G  +    DLWS   +C+E   G 
Sbjct: 152 LKIADFG---WSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGK 208
Query: 189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WP 247
               P   + Y +                        Y R           I R+ F +P
Sbjct: 209 ---PPFEANTYQET-----------------------YKR-----------ISRVEFTFP 231
Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                    DF    A+D+   L   L   P +RP   + L HPW++A
Sbjct: 232 ---------DFVTEGARDLISRL---LKHNPSQRPMLREVLEHPWITA 267

>pdb|3D14|A Chain A, Crystal Structure Of Mouse Aurora A (Asn186->gly, Lys240->arg, Met302- >leu) In Complex With 1-{5-[2-(Thieno[3,2-D]pyrimidin-4-Ylamino)- Ethyl]- Thiazol-2-Yl}-3-(3-Trifluoromethyl-Phenyl)-Urea Length = 272

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 80/225 (35%), Gaps = 54/225 (24%)
Query: 76  VDTIPNGVSVEERQNDSVVNNE--SSRDNEVKNTSQGVKGHRRPSRATR-KNLLAAVDVQ 132
           ++  P G    E Q  S  + +  ++   E+ N        R   R  + +NLL   + +
Sbjct: 91  LEYAPLGTVYRELQKLSRFDEQRTATYITELANALSYCHSKRVIHRDIKPENLLLGSNGE 150
Query: 133 CKLVDFGNACWT-HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG +      + T    T  Y  PE++ G  +    DLWS   +C+E   G   F
Sbjct: 151 LKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGMPPF 210
Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF-WPMNK 250
           + H+                              Y   +       R I R+ F +P   
Sbjct: 211 EAHT------------------------------YQETY-------RRISRVEFTFP--- 230
Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                 DF    A+D+   L   L     +R T A+ L HPW+ A
Sbjct: 231 ------DFVTEGARDLISRL---LKHNASQRLTLAEVLEHPWIKA 266

>pdb|3DLS|A Chain A, Crystal Structure Of Human Pas Kinase Bound To Adp Length = 335

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 123 KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKY-STSADLWSFAC 179
           +N++ A D   KL+DFG+A +    K F     T +Y  PEVL+G+ Y     ++WS   
Sbjct: 159 ENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGV 218
Query: 180 ICFELA 185
             + L 
Sbjct: 219 TLYTLV 224

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	358
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	9e-81
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	4e-75
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	6e-48
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	2e-46
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	1e-45
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	7e-43
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	1e-42
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	4e-26
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	7e-26
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	1e-25
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	1e-25
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	1e-24
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	2e-24
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	3e-24
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	5e-24
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	6e-24
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	1e-23
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	1e-23
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	2e-23
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	2e-23
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	3e-23
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	3e-23
3niz_A	311	Rhodanese family protein; structural genomics, str	8e-23
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	1e-22
3o0g_A	292	Cell division protein kinase 5; kinase activator c	2e-22
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	2e-22
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	2e-22
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	3e-22
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	7e-22
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	2e-21
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	2e-21
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	3e-21
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	4e-21
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	7e-21
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	7e-20
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	5e-19
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	4e-18
3rp9_A	458	Mitogen-activated protein kinase; structural genom	8e-17
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	6e-14
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	9e-14
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	5e-13
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	5e-13
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	1e-12
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	2e-12
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	3e-12
4apc_A	350	Serine/threonine-protein kinase NEK1; transferase;	4e-12
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	4e-12
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	4e-12
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	5e-12
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	5e-12
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	6e-12
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	6e-12
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	1e-11
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	1e-11
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	2e-11
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	3e-11
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	3e-11
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	4e-11
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	4e-11
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	5e-11
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	5e-11
2a19_B	284	Interferon-induced, double-stranded RNA-activated	5e-11
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	7e-11
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	8e-11
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	1e-10
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	1e-10
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	1e-10
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	2e-10
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	2e-10
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	2e-10
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	3e-10
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-10
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	4e-10
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	4e-10
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	4e-10
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	5e-10
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	5e-10
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	7e-10
3bhy_A	283	Death-associated protein kinase 3; death associate	1e-09
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	1e-09
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	1e-09
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	1e-09
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	2e-09
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	2e-09
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	2e-09
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	2e-09
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	3e-09
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	4e-09
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	5e-09
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	5e-09
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	6e-09
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	6e-09
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	6e-09
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	7e-09
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	7e-09
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	7e-09
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	8e-09
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	1e-08
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	1e-08
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	1e-08
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	2e-08
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	3e-08
2dyl_A	318	Dual specificity mitogen-activated protein kinase	3e-08
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	3e-08
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	3e-08
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	4e-08
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	5e-08
3aln_A	327	Dual specificity mitogen-activated protein kinase;	7e-08
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	8e-08
3fme_A	290	Dual specificity mitogen-activated protein kinase;	1e-07
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	1e-07
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	2e-07
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	2e-07
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	3e-07
1uu3_A	310	HPDK1, 3-phosphoinositide dependent protein kinase	3e-07
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	3e-07
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	4e-07
3an0_A	340	Dual specificity mitogen-activated protein kinase;	4e-07
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	4e-07
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	4e-07
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	5e-07
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	6e-07
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	6e-07
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	6e-07
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	8e-07
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	8e-07
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	9e-07
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	1e-06
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	7e-04
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	1e-06
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	1e-06
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	2e-06
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	2e-06
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	2e-06
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	2e-06
3q4u_A	301	Activin receptor type-1; structural genomics conso	3e-06
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	3e-06
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	3e-06
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	4e-06
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	4e-06
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	6e-06
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	7e-06
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	1e-05
3pvu_A	695	Beta-adrenergic receptor kinase 1; transferase, se	1e-05
3soc_A	322	Activin receptor type-2A; structural genomics cons	2e-05
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	2e-05
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	3e-05
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	4e-05
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	7e-05
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	1e-04
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	2e-04
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	2e-04
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	2e-04
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	3e-04
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	3e-04
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	4e-04
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	4e-04
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	4e-04
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	6e-04
3g51_A	325	Ribosomal protein S6 kinase alpha-3; N-terminal ki	8e-04

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A* Length = 397

 Score =  250 bits (641), Expect = 9e-81
 Identities = 100/225 (44%), Positives = 144/225 (64%), Gaps = 2/225 (0%)

Query: 71  PDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATRKNLLAAVD 130
           P+N  +    N   +     ++     S       +                     A  
Sbjct: 175 PENILLSV--NEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEK 232

Query: 131 VQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           ++ K+ D GNACW HK FT DIQTRQYR  EVL+GS Y+T AD+WS AC+ FELATGD L
Sbjct: 233 LKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYL 292

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+PHSG+ Y +DEDH+AL++ELLG +PRK+ + G+YS++FF + GDL+HI +L+ W + +
Sbjct: 293 FEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFE 352

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           VLVEKY++++ +A    DFL+P+L+ +PEKR TAA+CL HPW+++
Sbjct: 353 VLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLRHPWLNS 397

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A Length = 373

 Score =  235 bits (602), Expect = 4e-75
 Identities = 86/184 (46%), Positives = 121/184 (65%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD LF+P
Sbjct: 178 KIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP 237

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV 253
             G +Y KD+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWP+  VL 
Sbjct: 238 DEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLT 297

Query: 254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETE 313
           EKY F++ +AK+++DFL P+L   P KR  A   ++HPW+     + E  +   E   + 
Sbjct: 298 EKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDRELYGSG 357

Query: 314 GSIP 317
             IP
Sbjct: 358 SDIP 361

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7} Length = 360

 Score =  164 bits (418), Expect = 6e-48
 Identities = 50/185 (27%), Positives = 85/185 (45%), Gaps = 14/185 (7%)

Query: 115 RRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADL 174
           RR +   +  +        KL+DFG A +      + I TRQYR PEV+L   +  S+D+
Sbjct: 183 RRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDYHGSIINTRQYRAPEVILNLGWDVSSDM 242

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK-IALGGRYSRDFFNR 233
           WSF C+  EL TG +LF  H  ++     +HLA+M  ++  +P+  +    + +   +  
Sbjct: 243 WSFGCVLAELYTGSLLFRTH--EHM----EHLAMMESIIQPIPKNMLYEATKTNGSKYVN 296

Query: 234 HGDLR-----HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL 288
             +L+     +   +      K  +  Y   + +     DFL  IL   P  RP+ A+ L
Sbjct: 297 KDELKLAWPENASSINSIKHVKKCLPLYKIIKHEL--FCDFLYSILQIDPTLRPSPAELL 354

Query: 289 SHPWM 293
            H ++
Sbjct: 355 KHKFL 359

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A* Length = 339

 Score =  160 bits (406), Expect = 2e-46
 Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 8/167 (4%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG+A +  +  +  + TR YR PEV+L   +S   D+WS  CI  E   G  +F  
Sbjct: 177 KVVDFGSATYDDEHHSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPT 236

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR--FWPMNKV 251
           H  D+     +HLA+M  +LG +P+ +    R  + F +   D               K 
Sbjct: 237 H--DSK----EHLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKP 290

Query: 252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
           L E     + + + + D +  +L++ P KR T  + L HP+     +
Sbjct: 291 LKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDLLKK 337

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A* Length = 355

 Score =  158 bits (402), Expect = 1e-45
 Identities = 45/166 (27%), Positives = 75/166 (45%), Gaps = 8/166 (4%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           ++ DFG+A + H+  T  + TR YR PEV+L   ++   D+WS  CI FE   G  LF  
Sbjct: 182 RVADFGSATFDHEHHTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQT 241

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV 253
           H  +N     +HL +M ++LG +P  +    R  + F+              +       
Sbjct: 242 H--ENR----EHLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKP 295

Query: 254 EKYDFNERDAKD--MADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
            K    +   +   + D +  +L+F P +R T A+ L HP+ +   
Sbjct: 296 LKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGLT 341

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A* Length = 382

 Score =  152 bits (385), Expect = 7e-43
 Identities = 48/181 (26%), Positives = 75/181 (41%), Gaps = 28/181 (15%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K+VDFG++C   ++    IQ+R YR PEVLLG  Y  + D+WS  CI  E+ TG+ LF  
Sbjct: 201 KIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSG 260

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD----------------- 236
            +        D +  ++E+LG+ P  I      +R FF +  D                 
Sbjct: 261 AN--EV----DQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTKDGKREYKP 314

Query: 237 -----LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                L +I  +           +      D     D ++ +LD+ P+ R      L H 
Sbjct: 315 PGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHS 374

Query: 292 W 292
           +
Sbjct: 375 F 375

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* Length = 429

 Score =  152 bits (385), Expect = 1e-42
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 27/178 (15%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           K++DFG++C+ H++    IQ+R YR PEV+LG++Y    D+WS  CI  EL TG  L   
Sbjct: 242 KVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPG 301

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI------------- 240
              D      D LA M+ELLGM  +K+    + +++F +  G  R+              
Sbjct: 302 E--DEG----DQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSDGSVVLN 355

Query: 241 ------RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                  +LR  P ++         +       DFL   L++ P  R T  Q L HPW
Sbjct: 356 GGRSRRGKLRGPPESREWGNALKGCDDPL--FLDFLKQCLEWDPAVRMTPGQALRHPW 411

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens} Length = 353

 Score =  105 bits (265), Expect = 4e-26
 Identities = 60/199 (30%), Positives = 89/199 (44%), Gaps = 40/199 (20%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-YST 170
           HR  +P      NL    D + K++DFG A     + T  + TR YR PEV+L    Y+ 
Sbjct: 149 HRDLKPG-----NLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHYNQ 203

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
           + D+WS  CI  E+ TG  LF    G +Y    D L  ++++ G +P           +F
Sbjct: 204 TVDIWSVGCIMAEMLTGKTLF---KGKDY---LDQLTQILKVTG-VP---------GTEF 247

Query: 231 FNRHGD---LRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTA 284
             +  D     +I+ L   P       + DF +    A   A D L  +L+   +KR TA
Sbjct: 248 VQKLNDKAAKSYIQSLPQTP-------RKDFTQLFPRASPQAADLLEKMLELDVDKRLTA 300

Query: 285 AQCLSHPWMSAGPQLREPS 303
           AQ L+HP+       R+P 
Sbjct: 301 AQALTHPFFE---PFRDPE 316

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7 Length = 367

 Score =  105 bits (264), Expect = 7e-26
 Identities = 55/199 (27%), Positives = 84/199 (42%), Gaps = 40/199 (20%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-YST 170
           HR  +P      NL    D + K++DFG A     + T  + TR YR PEV+L    Y+ 
Sbjct: 151 HRDLKPG-----NLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQ 205

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
           + D+WS  CI  E+ TG  LF    G ++    D L  +M++ G  P           +F
Sbjct: 206 TVDIWSVGCIMAEMITGKTLF---KGSDH---LDQLKEIMKVTG-TP---------PAEF 249

Query: 231 FNRHGD---LRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTA 284
             R        +++ L           K DF     +A  +A + L  +L    E+R TA
Sbjct: 250 VQRLQSDEAKNYMKGLPELE-------KKDFASILTNASPLAVNLLEKMLVLDAEQRVTA 302

Query: 285 AQCLSHPWMSAGPQLREPS 303
            + L+HP+      L +  
Sbjct: 303 GEALAHPYFE---SLHDTE 318

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ... Length = 367

 Score =  105 bits (263), Expect = 1e-25
 Identities = 60/199 (30%), Positives = 88/199 (44%), Gaps = 40/199 (20%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-YST 170
           HR  +PS     NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ 
Sbjct: 155 HRDLKPS-----NLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMHYNQ 209

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
           + D+WS  CI  EL TG  LF    G ++    D L L++ L+G  P           + 
Sbjct: 210 TVDIWSVGCIMAELLTGRTLF---PGTDH---IDQLKLILRLVG-TP---------GAEL 253

Query: 231 FNRHGD---LRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTA 284
             +        +I+ L   P       K +F      A  +A D L  +L    +KR TA
Sbjct: 254 LKKISSESARNYIQSLTQMP-------KMNFANVFIGANPLAVDLLEKMLVLDSDKRITA 306

Query: 285 AQCLSHPWMSAGPQLREPS 303
           AQ L+H + +   Q  +P 
Sbjct: 307 AQALAHAYFA---QYHDPD 322

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ... Length = 371

 Score =  105 bits (263), Expect = 1e-25
 Identities = 52/204 (25%), Positives = 82/204 (40%), Gaps = 38/204 (18%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGSKYS 169
           HR  +PS     N++   D   K++DFG A      F  T  + TR YR PEV+LG  Y 
Sbjct: 150 HRDLKPS-----NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYK 204

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD 229
            + D+WS  CI  E+  G VLF    G ++    D    ++E LG  P           +
Sbjct: 205 ENVDIWSVGCIMGEMIKGGVLF---PGTDH---IDQWNKVIEQLG-TP---------CPE 248

Query: 230 FFNRHGD--LRHIRRLRFWP--------MNKVLVEKYDFNERDAKDMADFLVPILDFVPE 279
           F  +       ++     +          + +     + N+  A    D L  +L     
Sbjct: 249 FMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDAS 308

Query: 280 KRPTAAQCLSHPWMSAGPQLREPS 303
           KR +  + L HP+++      +PS
Sbjct: 309 KRISVDEALQHPYIN---VWYDPS 329

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens} Length = 311

 Score =  101 bits (253), Expect = 1e-24
 Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 21/194 (10%)

Query: 124 NLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           N+L       KL DFG A         + +++ TR YR PE+L+G   Y    D+W+  C
Sbjct: 132 NILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGC 191

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           +  EL +G  L+    G +   D D L L+ + LG +  +       ++ F         
Sbjct: 192 VFAELLSGVPLW---PGKS---DVDQLYLIRKTLGDLIPRHQQVFSTNQYF--------S 237

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
             ++      + L  K+      A      L   L   P +R T  Q L HP+     ++
Sbjct: 238 GVKIPDPEDMEPLELKFPNISYPA---LGLLKGCLHMDPTERLTCEQLLHHPYFENIREI 294

Query: 300 REPSMAAGEPRETE 313
            + +    +P E  
Sbjct: 295 EDLAKEHDKPAENL 308

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A* Length = 464

 Score =  102 bits (256), Expect = 2e-24
 Identities = 51/204 (25%), Positives = 81/204 (39%), Gaps = 38/204 (18%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPEVLLGSKYS 169
           HR  +PS     N++   D   K++DFG A      F  T  + TR YR PEV+LG  Y 
Sbjct: 187 HRDLKPS-----NIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYK 241

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD 229
            + D+WS  CI  E+    +LF    G +Y    D    ++E LG  P           +
Sbjct: 242 ENVDIWSVGCIMGEMVRHKILF---PGRDY---IDQWNKVIEQLG-TP---------CPE 285

Query: 230 FFNRHGD--LRHIRRLRFWP--------MNKVLVEKYDFNERDAKDMADFLVPILDFVPE 279
           F  +       ++     +          + +     + N+  A    D L  +L   P 
Sbjct: 286 FMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPA 345

Query: 280 KRPTAAQCLSHPWMSAGPQLREPS 303
           KR +    L HP+++      +P+
Sbjct: 346 KRISVDDALQHPYIN---VWYDPA 366

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3o71_A 3r63_A 3c9w_A* 2y9q_A* 3sa0_A* 1wzy_A* 2e14_A* 1tvo_A* 2ojg_A* 2oji_A* ... Length = 364

 Score =  100 bits (252), Expect = 3e-24
 Identities = 59/205 (28%), Positives = 85/205 (41%), Gaps = 46/205 (22%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLG 165
           HR  +PS     NLL       K+ DFG A             T  + TR YR PE++L 
Sbjct: 151 HRDLKPS-----NLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN 205

Query: 166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG 224
           SK Y+ S D+WS  CI  E+ +   +F    G +Y    D L  ++ +LG  P       
Sbjct: 206 SKGYTKSIDIWSVGCILAEMLSNRPIF---PGKHY---LDQLNHILGILGS-P------- 251

Query: 225 RYSRDFFNRHGD---LRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVP 278
             S++  N   +     ++  L           K  +N    +A   A D L  +L F P
Sbjct: 252 --SQEDLNCIINLKARNYLLSLPHKN-------KVPWNRLFPNADSKALDLLDKMLTFNP 302

Query: 279 EKRPTAAQCLSHPWMSAGPQLREPS 303
            KR    Q L+HP++    Q  +PS
Sbjct: 303 HKRIEVEQALAHPYLE---QYYDPS 324

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens} Length = 320

 Score = 99.7 bits (249), Expect = 5e-24
 Identities = 53/205 (25%), Positives = 81/205 (39%), Gaps = 46/205 (22%)

Query: 114 HR--RPSRATRKNLLA-AVDVQCKLVDFGNA-----CWTHKQF-TNDIQTRQYRCPEVLL 164
           HR  +P+     NL     D+  K+ DFG A      ++HK   +  + T+ YR P +LL
Sbjct: 143 HRDLKPA-----NLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKWYRSPRLLL 197

Query: 165 GSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG 223
               Y+ + D+W+  CI  E+ TG  LF   +G +     + + L++E + +        
Sbjct: 198 SPNNYTKAIDMWAAGCIFAEMLTGKTLF---AGAHE---LEQMQLILESIPV-V------ 244

Query: 224 GRYSRDFFNRHGD--LRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVP 278
                +           +IR     P            +        A DFL  IL F P
Sbjct: 245 ---HEEDRQELLSVIPVYIRNDMTEP-------HKPLTQLLPGISREAVDFLEQILTFSP 294

Query: 279 EKRPTAAQCLSHPWMSAGPQLREPS 303
             R TA + LSHP+MS       P 
Sbjct: 295 MDRLTAEEALSHPYMS---IYSFPM 316

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} Length = 331

 Score = 99.6 bits (249), Expect = 6e-24
 Identities = 50/212 (23%), Positives = 76/212 (35%), Gaps = 38/212 (17%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      N+L +     KL DFG A       + + +++ TR YR PE+L+G   
Sbjct: 147 HRDIKPE-----NILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVK 201

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIAL 222
           Y  + D+W+  C+  E+  G+ LF    GD+   D D L  +M  LG             
Sbjct: 202 YGKAVDVWAIGCLVTEMFMGEPLF---PGDS---DIDQLYHIMMCLGNLIPRHQE----- 250

Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
               +  F           RL      + L  +Y           D     L   P+KRP
Sbjct: 251 LFNKNPVF--------AGVRLPEIKEREPLERRYPKLSEVV---IDLAKKCLHIDPDKRP 299

Query: 283 TAAQCLSHPWMSAGPQLREPSMAAGEPRETEG 314
             A+ L H +          S       + + 
Sbjct: 300 FCAELLHHDFFQMDGFAERFSQELQLKVQKDA 331

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7 Length = 346

 Score = 99.2 bits (248), Expect = 1e-23
 Identities = 60/237 (25%), Positives = 84/237 (35%), Gaps = 47/237 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P+     NLL   +   KL DFG A      ++ +T+ + TR YR PE+L G++ 
Sbjct: 135 HRDLKPN-----NLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM 189

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIAL 222
           Y    D+W+  CI  EL           GD+   D D L  + E LG       P     
Sbjct: 190 YGVGVDMWAVGCILAELLLRVPFL---PGDS---DLDQLTRIFETLGTPTEEQWP----- 238

Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                         L      + +P    L   +     D  D+   L     F P  R 
Sbjct: 239 ----------DMCSLPDYVTFKSFPGIP-LHHIFSAAGDDLLDLIQGL---FLFNPCARI 284

Query: 283 TAAQCLSHPWMSAGP------QLREPSMAAGEPRETEGSIPERKRREQEEREAMEVG 333
           TA Q L   + S  P      QL  P+      +E        KR+  E  E   + 
Sbjct: 285 TATQALKMKYFSNRPGPTPGCQLPRPNCPVETLKEQSNPALAIKRKRTEALEQGGLP 341

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens} Length = 324

 Score = 98.4 bits (246), Expect = 1e-23
 Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 45/230 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL     + KL DFG A       K + N++ T  YR P++LLGS  
Sbjct: 123 HRDLKPQ-----NLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTD 177

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIAL 222
           YST  D+W   CI +E+ATG  LF    G      E+ L  +  +LG       P     
Sbjct: 178 YSTQIDMWGVGCIFYEMATGRPLF---PGST---VEEQLHFIFRILGTPTEETWP----- 226

Query: 223 GGRYSRDFFNRHGDLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK 280
                             +   +  +     L+      + D  D+   L   L F    
Sbjct: 227 ----------GILSNEEFKTYNYPKYRAEA-LLSHAPRLDSDGADLLTKL---LQFEGRN 272

Query: 281 RPTAAQCLSHPWMSAGPQLRE--PSMAAGEPRETEGSIPERKRREQEERE 328
           R +A   + HP+  +  +     P   +    +      E   R      
Sbjct: 273 RISAEDAMKHPFFLSLGERIHKLPDTTSIFALKEIQLQKEASLRSAHHHH 322

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major} Length = 360

 Score = 98.9 bits (247), Expect = 2e-23
 Identities = 52/202 (25%), Positives = 90/202 (44%), Gaps = 42/202 (20%)

Query: 114 HR--RPSRATRKNLLA-AVDVQCKLVDFGNACWTHKQFTND------IQTRQYRCPEVLL 164
           HR  +P      N+L    D   KL DFG+A    K+ +        I +R YR PE++ 
Sbjct: 154 HRDIKPH-----NVLVNEADGTLKLCDFGSA----KKLSPSEPNVAYICSRYYRAPELIF 204

Query: 165 GSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI--A 221
           G++ Y+T+ D+WS  CI  E+  G+ +F    GDN       L  ++ +LG   R++   
Sbjct: 205 GNQHYTTAVDIWSVGCIFAEMMLGEPIF---RGDNS---AGQLHEIVRVLGCPSREVLRK 258

Query: 222 LGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR 281
           L   ++                +  P + V  +    + ++A    D L  +L ++PE+R
Sbjct: 259 LNPSHTDVDL---------YNSKGIPWSNVFSDHSLKDAKEA---YDLLSALLQYLPEER 306

Query: 282 PTAAQCLSHPWMSAGPQLREPS 303
               + L HP+     +L +P+
Sbjct: 307 MKPYEALCHPYFD---ELHDPA 325

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II} Length = 383

 Score = 99.0 bits (247), Expect = 2e-23
 Identities = 57/231 (24%), Positives = 89/231 (38%), Gaps = 55/231 (23%)

Query: 108 SQGVKGHR--RPSRATRKNLLAAVDVQC---KLVDFGNACWTHKQFTND------IQTRQ 156
           S G+  HR  +P      NLL  V+ +    KL DFG+A    K+          I +R 
Sbjct: 159 SLGIC-HRDIKPQ-----NLL--VNSKDNTLKLCDFGSA----KKLIPSEPSVAYICSRF 206

Query: 157 YRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM 215
           YR PE++LG+ +Y+ S DLWS  C+  EL  G  LF   SG+      D L  +++++G 
Sbjct: 207 YRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLF---SGETS---IDQLVRIIQIMGT 260

Query: 216 MPRKIALGGRYSRDFFNRHGDLRHIRRLRFW---PMNKVLVEKYDFNERDAKDMADFLVP 272
            P         +++   R        R          K+        E       D L  
Sbjct: 261 -P---------TKEQMIRMNPHYTEVRFPTLKAKDWRKI------LPEGTPSLAIDLLEQ 304

Query: 273 ILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRRE 323
           IL + P+ R    + ++HP+      LR          +   + P    + 
Sbjct: 305 ILRYEPDLRINPYEAMAHPFFD---HLRNSY---ESEVKNNSNFPHGVNQN 349

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} Length = 362

 Score = 98.1 bits (245), Expect = 3e-23
 Identities = 44/200 (22%), Positives = 76/200 (38%), Gaps = 39/200 (19%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSK-Y 168
           HR   P      N+L A +    + DF  A         T+ +  R YR PE+++  K +
Sbjct: 157 HRDLHPG-----NILLADNNDITICDFNLAREDTADANKTHYVTHRWYRAPELVMQFKGF 211

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKI--ALGGRY 226
           +   D+WS  C+  E+     LF    G  +    + L  ++E++G    +         
Sbjct: 212 TKLVDMWSAGCVMAEMFNRKALF---RGSTF---YNQLNKIVEVVGTPKIEDVVMFSSPS 265

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPT 283
           +RD+            L   P          +      A  +A D +  +L+F P++R +
Sbjct: 266 ARDYLRN--------SLSNVP-------ARAWTAVVPTADPVALDLIAKMLEFNPQRRIS 310

Query: 284 AAQCLSHPWMSAGPQLREPS 303
             Q L HP+      L +P 
Sbjct: 311 TEQALRHPYFE---SLFDPL 327

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A* Length = 353

 Score = 97.7 bits (244), Expect = 3e-23
 Identities = 56/240 (23%), Positives = 85/240 (35%), Gaps = 50/240 (20%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-------------TRQYR 158
           HR  +PS     NLL   +   K+ DFG A    +   ++ +             TR YR
Sbjct: 135 HRDLKPS-----NLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYR 189

Query: 159 CPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMP 217
            PEV+L S  YS + D+WS  CI  EL     +F    G +Y      L L+  ++G   
Sbjct: 190 APEVMLTSAKYSRAMDVWSCGCILAELFLRRPIF---PGRDYR---HQLLLIFGIIGTPH 243

Query: 218 RKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPIL 274
               L                +I+ L  +P            +          D L  +L
Sbjct: 244 SDNDL------RCIESPRAREYIKSLPMYP-------AAPLEKMFPRVNPKGIDLLQRML 290

Query: 275 DFVPEKRPTAAQCLSHPWMSAGPQLR----EPSMAAGEPRETEGSIPERKRREQEEREAM 330
            F P KR TA + L HP++           EP      P   E    +     ++ ++ +
Sbjct: 291 VFDPAKRITAKEALEHPYLQ---TYHDPNDEPEGEPIPPSFFEFDHYKEALTTKDLKKLI 347

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} PDB: 2qkr_A* Length = 311

 Score = 96.1 bits (240), Expect = 8e-23
 Identities = 55/187 (29%), Positives = 83/187 (44%), Gaps = 33/187 (17%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL   D   KL DFG A       + +T+++ T  YR P+VL+GSK 
Sbjct: 142 HRDLKPQ-----NLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGSKK 196

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
           YSTS D+WS  CI  E+ TG  LF    G     D+D L  +  +LG  P         +
Sbjct: 197 YSTSVDIWSIGCIFAEMITGKPLF---PGVT---DDDQLPKIFSILG-TP---------N 240

Query: 228 RDFFNRHGDLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA 285
              + +  +L   ++  F  +              ++  D+   +   L F P KR +A 
Sbjct: 241 PREWPQVQELPLWKQRTFQVFEKKP-WSSIIPGFCQEGIDLLSNM---LCFDPNKRISAR 296

Query: 286 QCLSHPW 292
             ++HP+
Sbjct: 297 DAMNHPY 303

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} Length = 308

 Score = 95.3 bits (238), Expect = 1e-22
 Identities = 48/190 (25%), Positives = 67/190 (35%), Gaps = 44/190 (23%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYS 169
           HR  +P      N+L       KL DFG A         T  + T  YR PEVLL S Y+
Sbjct: 143 HRDLKPE-----NILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEVLLQSTYA 197

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIALGG 224
           T  D+WS  CI  E+     LF    G++   + D L  + +L+G       P       
Sbjct: 198 TPVDMWSVGCIFAEMFRRKPLF---CGNS---EADQLGKIFDLIGLPPEDDWP------- 244

Query: 225 RYSRDFFNRHGDLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                          + R  F        +       E     +   +   L F P KR 
Sbjct: 245 -----------RDVSLPRGAFPPRGPRP-VQSVVPEMEESGAQLLLEM---LTFNPHKRI 289

Query: 283 TAAQCLSHPW 292
           +A + L H +
Sbjct: 290 SAFRALQHSY 299

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A Length = 292

 Score = 94.9 bits (237), Expect = 2e-22
 Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 31/186 (16%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL   + + KL +FG A       + ++ ++ T  YR P+VL G+K 
Sbjct: 124 HRDLKPQ-----NLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKL 178

Query: 168 YSTSADLWSFACICFELATGDV-LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY 226
           YSTS D+WS  CI  ELA     LF    G++    +D L  +  LLG  P         
Sbjct: 179 YSTSIDMWSAGCIFAELANAGRPLF---PGND---VDDQLKRIFRLLG-TP--------- 222

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ 286
           + + +     L   +    +P    LV          +D+   L   L   P +R +A +
Sbjct: 223 TEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNATGRDLLQNL---LKCNPVQRISAEE 279

Query: 287 CLSHPW 292
            L HP+
Sbjct: 280 ALQHPY 285

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B Length = 326

 Score = 95.3 bits (238), Expect = 2e-22
 Identities = 54/202 (26%), Positives = 75/202 (37%), Gaps = 44/202 (21%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYS 169
           HR  +P      N+L     Q KL DFG A         T+ + T  YR PEVLL S Y+
Sbjct: 143 HRDLKPQ-----NILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYA 197

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIALGG 224
           T  DLWS  CI  E+     LF    G +   D D L  +++++G       P       
Sbjct: 198 TPVDLWSVGCIFAEMFRRKPLF---RGSS---DVDQLGKILDVIGLPGEEDWP------- 244

Query: 225 RYSRDFFNRHGDLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
                          + R  F        + +     +   KD+       L F P KR 
Sbjct: 245 -----------RDVALPRQAFHSKSAQP-IEKFVTDIDELGKDLLLKC---LTFNPAKRI 289

Query: 283 TAAQCLSHPWMSAGPQLREPSM 304
           +A   LSHP+     + +E   
Sbjct: 290 SAYSALSHPYFQDLERCKENLD 311

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis} Length = 394

 Score = 96.2 bits (240), Expect = 2e-22
 Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 51/205 (24%)

Query: 114 HR--RPSRATRKNLLAAVDVQC---KLVDFGNACWTHKQF------TNDIQTRQYRCPEV 162
           HR  +P      NLL  +D      KL+DFG+A    K         + I +R YR PE+
Sbjct: 164 HRDIKPQ-----NLL--LDPPSGVLKLIDFGSA----KILIAGEPNVSYICSRYYRAPEL 212

Query: 163 LLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA 221
           + G+  Y+T+ D+WS  C+  EL  G  LF    G++     D L  ++++LG  P    
Sbjct: 213 IFGATNYTTNIDIWSTGCVMAELMQGQPLF---PGESG---IDQLVEIIKVLGT-P---- 261

Query: 222 LGGRYSRDFFNRHGDLRHIRRLRFW---PMNKVLVEKYDFNERDAKDMADFLVPILDFVP 278
                SR+            +       P +KV   +         D  D +  +L++ P
Sbjct: 262 -----SREQIKTMNPNYMEHKFPQIRPHPFSKVFRPRTP------PDAIDLISRLLEYTP 310

Query: 279 EKRPTAAQCLSHPWMSAGPQLREPS 303
             R TA + L HP+     +LR   
Sbjct: 311 SARLTAIEALCHPFFD---ELRTGE 332

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A* Length = 317

 Score = 94.6 bits (236), Expect = 3e-22
 Identities = 61/202 (30%), Positives = 86/202 (42%), Gaps = 35/202 (17%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL     Q KL DFG A         F++++ T  YR P+VL+GS+ 
Sbjct: 131 HRDLKPQ-----NLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGSRT 185

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIAL 222
           YSTS D+WS  CI  E+ TG  LF    G N   DE+ L L+ +++G     + P    L
Sbjct: 186 YSTSIDIWSCGCILAEMITGKPLF---PGTN---DEEQLKLIFDIMGTPNESLWPSVTKL 239

Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
              Y+ +   R       R LR      +     +  + +  D    L   L   P+ R 
Sbjct: 240 PK-YNPNIQQRPP-----RDLR----QVLQPHTKEPLDGNLMDFLHGL---LQLNPDMRL 286

Query: 283 TAAQCLSHPWMSAGPQLREPSM 304
           +A Q L HPW +          
Sbjct: 287 SAKQALHHPWFAEYYHHASMGG 308

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ... Length = 420

 Score = 95.2 bits (237), Expect = 7e-22
 Identities = 51/205 (24%), Positives = 82/205 (40%), Gaps = 51/205 (24%)

Query: 114 HR--RPSRATRKNLLAAVDVQC---KLVDFGNACWTHKQFTND------IQTRQYRCPEV 162
           HR  +P      NLL  +D      KL DFG+A    KQ          I +R YR PE+
Sbjct: 179 HRDIKPQ-----NLL--LDPDTAVLKLCDFGSA----KQLVRGEPNVSYICSRYYRAPEL 227

Query: 163 LLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA 221
           + G+  Y++S D+WS  C+  EL  G  +F    GD+     D L  ++++LG  P    
Sbjct: 228 IFGATDYTSSIDVWSAGCVLAELLLGQPIF---PGDSG---VDQLVEIIKVLGT-P---- 276

Query: 222 LGGRYSRDFFNRHGDLRHIRRLRFW---PMNKVLVEKYDFNERDAKDMADFLVPILDFVP 278
                +R+            +       P  KV   +         +       +L++ P
Sbjct: 277 -----TREQIREMNPNYTEFKFPQIKAHPWTKVFRPRTP------PEAIALCSRLLEYTP 325

Query: 279 EKRPTAAQCLSHPWMSAGPQLREPS 303
             R T  +  +H +     +LR+P+
Sbjct: 326 TARLTPLEACAHSFFD---ELRDPN 347

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* Length = 351

 Score = 92.7 bits (231), Expect = 2e-21
 Identities = 45/214 (21%), Positives = 77/214 (35%), Gaps = 28/214 (13%)

Query: 124 NLLAAVDVQCKLVDFG-------NACWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLW 175
           N+L   D   KL DFG              ++TN + T  YR PE+LLG + Y    DLW
Sbjct: 154 NVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDLW 213

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
              CI  E+ T   +     G+    ++  LAL+ +L G            + + +    
Sbjct: 214 GAGCIMAEMWTRSPIM---QGNT---EQHQLALISQLCGS-I---------TPEVWPNVD 257

Query: 236 DLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           +     +L        K + ++     RD   + D +  +L   P +R  +   L+H + 
Sbjct: 258 NYELYEKLELVKGQKRK-VKDRLKAYVRDPYAL-DLIDKLLVLDPAQRIDSDDALNHDFF 315

Query: 294 SAGPQLREPSMAAGEPRETEGSIPERKRREQEER 327
            + P   +          +        RR+    
Sbjct: 316 WSDPMPSDLKGMLSTHLTSMFEYLAPPRRKHHHH 349

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II} Length = 388

 Score = 92.8 bits (231), Expect = 3e-21
 Identities = 50/222 (22%), Positives = 83/222 (37%), Gaps = 46/222 (20%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG------------------------NACWTHKQ 147
           HR  +PS     N+L   +   K+ DFG                        N       
Sbjct: 132 HRDMKPS-----NILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPI 186

Query: 148 FTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHL 206
            T+ + TR YR PE+LLGS  Y+   D+WS  CI  E+  G  +F    G +     + L
Sbjct: 187 LTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIF---PGSST---MNQL 240

Query: 207 ALMMELLGMMPRKI--ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYD--FNERD 262
             ++ ++     +   ++   +++       +   IR+     +             + D
Sbjct: 241 ERIIGVIDFPSNEDVESIQSPFAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKAD 300

Query: 263 AKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
             + A D L  +L F P KR +A   L HP++S       P+
Sbjct: 301 CNEEALDLLDKLLQFNPNKRISANDALKHPFVS---IFHNPN 339

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A Length = 288

 Score = 91.0 bits (227), Expect = 4e-21
 Identities = 52/190 (27%), Positives = 77/190 (40%), Gaps = 40/190 (21%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +P      NLL   + + K+ DFG A       +++T++I T  YR P+VL+GSK 
Sbjct: 123 HRDLKPQ-----NLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKK 177

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMPRKIAL 222
           YST+ D+WS  CI  E+  G  LF    G +   + D L  +  +LG       P    L
Sbjct: 178 YSTTIDIWSVGCIFAEMVNGTPLF---PGVS---EADQLMRIFRILGTPNSKNWPNVTEL 231

Query: 223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP 282
              Y  +F               +             +    D+   +   L   P +R 
Sbjct: 232 PK-YDPNF-------------TVYEPLP-WESFLKGLDESGIDLLSKM---LKLDPNQRI 273

Query: 283 TAAQCLSHPW 292
           TA Q L H +
Sbjct: 274 TAKQALEHAY 283

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A* Length = 329

 Score = 90.8 bits (226), Expect = 7e-21
 Identities = 58/195 (29%), Positives = 83/195 (42%), Gaps = 44/195 (22%)

Query: 114 HR--RPSRATRKNLL-----AAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVL 163
           HR  +P      NLL     A+     K+ DFG A       +QFT++I T  YR PE+L
Sbjct: 155 HRDLKPQ-----NLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEIL 209

Query: 164 LGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-----MMP 217
           LGS+ YSTS D+WS ACI  E+     LF    GD+   + D L  + E+LG       P
Sbjct: 210 LGSRHYSTSVDIWSIACIWAEMLMKTPLF---PGDS---EIDQLFKIFEVLGLPDDTTWP 263

Query: 218 RKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFV 277
              AL   + + F               +    +        + +  D+   +   L+  
Sbjct: 264 GVTALPD-WKQSFPK-------------FRGKTLKRVLGALLDDEGLDLLTAM---LEMD 306

Query: 278 PEKRPTAAQCLSHPW 292
           P KR +A   L HP+
Sbjct: 307 PVKRISAKNALEHPY 321

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} Length = 405

 Score = 89.1 bits (221), Expect = 7e-20
 Identities = 49/244 (20%), Positives = 88/244 (36%), Gaps = 56/244 (22%)

Query: 114 HR--RPSRATRKNLLAAVDV----QCKLVDFGNA--------CWTHKQFTNDIQTRQYRC 159
           HR  +P+     N+L   +     + K+ D G A                  + T  YR 
Sbjct: 151 HRDLKPA-----NILVMGEGPERGRVKIADMGFARLFNSPLKPLAD--LDPVVVTFWYRA 203

Query: 160 PEVLLGSK-YSTSADLWSFACICFELATGDVLF---DPHSGDNYDKDEDHLALMMELLGM 215
           PE+LLG++ Y+ + D+W+  CI  EL T + +F         +     D L  +  ++G 
Sbjct: 204 PELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGF 263

Query: 216 -----------MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAK 264
                      MP    L   + R+ +     ++++ + +  P +K              
Sbjct: 264 PADKDWEDIKKMPEHSTLMKDFRRNTYTNCSLIKYMEKHKVKPDSKAF------------ 311

Query: 265 DMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQ 324
                L  +L   P KR T+ Q +  P+    P       A       +   P+R+   +
Sbjct: 312 ---HLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPTSDVFA-----GCQIPYPKREFLTE 363

Query: 325 EERE 328
           EE +
Sbjct: 364 EEPD 367

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3mb7_A* 3mb6_A* 3owj_A* 3owk_A* ... Length = 330

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 47/199 (23%), Positives = 87/199 (43%), Gaps = 34/199 (17%)

Query: 108 SQGVKGHR--RPSRATRKNLLAAVDVQC---KLVDFGNACWTH--KQFTNDIQTRQYRCP 160
           S G+  HR  +P      N++  +D +    +L+D+G A + H  +++   + +R ++ P
Sbjct: 148 SMGIM-HRDVKPH-----NVM--IDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGP 199

Query: 161 EVLLGSK-YSTSADLWSFACICFELATG-DVLFDPHSGDNYDKDEDHLALMMELLGMMPR 218
           E+L+  + Y  S D+WS  C+   +    +  F  H  DNYD     L  + ++LG    
Sbjct: 200 ELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFF--HGHDNYD----QLVRIAKVLGT-ED 252

Query: 219 KIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKY--DFNERDAKDMA-DFLVPILD 275
                 +Y+ +      D R    L      +   E++    N+      A DFL  +L 
Sbjct: 253 LYDYIDKYNIEL-----DPRFNDILGRHS--RKRWERFVHSENQHLVSPEALDFLDKLLR 305

Query: 276 FVPEKRPTAAQCLSHPWMS 294
           +  + R TA + + HP+  
Sbjct: 306 YDHQSRLTAREAMEHPYFY 324

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A* Length = 432

 Score = 84.0 bits (208), Expect = 4e-18
 Identities = 51/245 (20%), Positives = 81/245 (33%), Gaps = 79/245 (32%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG-------------------------NACWTHK 146
           HR  +P+     N L   D   K+ DFG                         +     K
Sbjct: 152 HRDLKPA-----NCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNLKK 206

Query: 147 QFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDV-----------LF--- 191
           Q T+ + TR YR PE++L  + Y+ S D+WS  CI  EL                LF   
Sbjct: 207 QLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGS 266

Query: 192 -------DPHSGDNYDKDE-DHLALMMELLGMMPRK--IALGGRYSRDFFNRHGDLRHIR 241
                  D +S   ++K   D L ++  ++G         +       +         I+
Sbjct: 267 SCFPLSPDRNSKKVHEKSNRDQLNIIFNIIGTPTEDDLKNINKPEVIKY---------IK 317

Query: 242 RLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
                          +  ++     D   + L  +L F P KR T  Q L HP++     
Sbjct: 318 LFPHRK-------PINLKQKYPSISDDGINLLESMLKFNPNKRITIDQALDHPYLK---D 367

Query: 299 LREPS 303
           +R+  
Sbjct: 368 VRKKK 372

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii} Length = 458

 Score = 80.3 bits (198), Expect = 8e-17
 Identities = 54/253 (21%), Positives = 82/253 (32%), Gaps = 87/253 (34%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG------------------------------NA 141
           HR  +P+     N L   D   K+ DFG                              + 
Sbjct: 179 HRDLKPA-----NCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPHT 233

Query: 142 CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFEL-----------ATGDV 189
               +Q T  + TR YR PE++L  + Y+ + D+WS  CI  EL           A    
Sbjct: 234 KNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGP 293

Query: 190 LF--------------DPHSGDNYDKDEDHLALMMELLGMMPRKI--ALGGRYSRDFFNR 233
           LF                    +   + D L ++  +LG    +   AL    ++ +   
Sbjct: 294 LFPGSSCFPLSPDQKAGNDFKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRY--- 350

Query: 234 HGDLRHIRRLRFWPMNKVLVEKYDFNER--DAKDMA-DFLVPILDFVPEKRPTAAQCLSH 290
                 IR               D  ER   +   A   L  +L F P KR T  +CL+H
Sbjct: 351 ------IRIFPKRE-------GTDLAERFPASSADAIHLLKRMLVFNPNKRITINECLAH 397

Query: 291 PWMSAGPQLREPS 303
           P+     ++R   
Sbjct: 398 PFFK---EVRIAE 407

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens} Length = 319

 Score = 70.6 bits (173), Expect = 6e-14
 Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 43/189 (22%)

Query: 124 NLLAAV----DVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGS------- 166
           N++  +        KL DFG A    ++  +D Q      T +Y  P++   +       
Sbjct: 142 NIMRVIGEDGQSVYKLTDFGAA----RELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR 225
            KY  + DLWS     +  ATG + F P  G   +K         E++     KI  G  
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNK---------EVM----YKIITGKP 244

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTA 284
                  +  +   I      P++  L        R  + +    L  IL+   EK    
Sbjct: 245 SGAISGVQKAENGPIDWSGDMPVSCSL-------SRGLQVLLTPVLANILEADQEKCWGF 297

Query: 285 AQCLSHPWM 293
            Q  +    
Sbjct: 298 DQFFAETSD 306

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A* Length = 371

 Score = 70.5 bits (172), Expect = 9e-14
 Identities = 21/187 (11%), Positives = 39/187 (20%), Gaps = 41/187 (21%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK--YSTSADLWSFACIC 181
           NL    D +  L D         +         Y   E L  S   ++ + + W      
Sbjct: 224 NLFIMPDGRLMLGDVSALWKVGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSI 283

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           + +    + F                  + + G                      L  I 
Sbjct: 284 YRVWCLFLPFG---LVTPGIKGSWKRPSLRVPGTDSLAFGSCTPLPDFV----KTL--IG 334

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
           R                               L+F   +R    + +  P          
Sbjct: 335 RF------------------------------LNFDRRRRLLPLEAMETPEFLQLQNEIS 364

Query: 302 PSMAAGE 308
            S++ G+
Sbjct: 365 SSLSTGQ 371

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* Length = 360

 Score = 68.3 bits (167), Expect = 5e-13
 Identities = 40/189 (21%), Positives = 65/189 (34%), Gaps = 24/189 (12%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGS 166
           HR  +PS     N+L     + KL DFG +     Q  + +      TR Y  PE L G+
Sbjct: 155 HRDVKPS-----NILVNSRGEIKLCDFGVS----GQLIDSMANSFVGTRSYMSPERLQGT 205

Query: 167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY 226
            YS  +D+WS      E+A G     P      +       +    +     +     R 
Sbjct: 206 HYSVQSDIWSMGLSLVEMAVGRYPIPPPDAKELE------LMFGCQVEGDAAETPPRPRT 259

Query: 227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDA--KDMADFLVPILDFVPEKRPTA 284
                N+ G         F  ++ ++ E            +  DF+   L   P +R   
Sbjct: 260 PGRPLNKFGMDSRPPMAIFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADL 319

Query: 285 AQCLSHPWM 293
            Q + H ++
Sbjct: 320 KQLMVHAFI 328

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A* Length = 336

 Score = 68.2 bits (167), Expect = 5e-13
 Identities = 31/205 (15%), Positives = 53/205 (25%), Gaps = 62/205 (30%)

Query: 124 NLLAAVD-VQCKLVDFGNACWTHKQFTNDIQTRQYRC------------PEVLLGSKYST 170
           N+L + D  +  L DFG+A         D   +                PEV++G     
Sbjct: 180 NVLLSSDGSRAALCDFGHA----LCLQPDGLGKSLLTGDYIPGTETHMAPEVVMGKPCDA 235

Query: 171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF 230
             D+WS  C+   +  G     P +            L +++    P    +    +   
Sbjct: 236 KVDIWSSCCMMLHMLNGCH---PWT------QYFRGPLCLKIASEPPPIREIPPSCAPLT 286

Query: 231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                                               A  +   L   P  R +A +    
Sbjct: 287 ------------------------------------AQAIQEGLRKEPVHRASAMELRRK 310

Query: 291 PWMSAGPQLREPSMAAGEPRETEGS 315
              +        S   GE +E  G+
Sbjct: 311 VGKALQEVGGLKSPWKGEYKEPRGN 335

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens} Length = 311

 Score = 66.6 bits (163), Expect = 1e-12
 Identities = 38/181 (20%), Positives = 60/181 (33%), Gaps = 58/181 (32%)

Query: 124 NLLAAVDVQCKLVDFGNA-CWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N+      +CKL DFG              +   +Y  PE+L G  Y T+AD++S     
Sbjct: 187 NIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTI 245

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
            E+A    L  PH G+ + +       + +  G +P +       S +            
Sbjct: 246 LEVACNMEL--PHGGEGWQQ-------LRQ--GYLPPEFT--AGLSSEL----------- 281

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
                                       LV +L+  P+ R TA   L+ P       LR+
Sbjct: 282 -------------------------RSVLVMMLEPDPKLRATAEALLALPV------LRQ 310

Query: 302 P 302
           P
Sbjct: 311 P 311

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 3lau_A* 2wtv_A* ... Length = 279

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 35/177 (19%), Positives = 58/177 (32%), Gaps = 55/177 (31%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKYSTSADLWSFAC 179
           NLL     + K+ DFG   W+    ++          Y  PE++ G  +    DLWS   
Sbjct: 139 NLLLGSAGELKIADFG---WSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGV 195

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           +C+E   G   F+            +            ++I               +   
Sbjct: 196 LCYEFLVGKPPFE---------ANTYQETY--------KRI------------SRVEFT- 225

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
                 +P         DF    A+   D +  +L   P +RP   + L HPW++A 
Sbjct: 226 ------FP---------DFVTEGAR---DLISRLLKHNPSQRPMLREVLEHPWITAN 264

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A* Length = 279

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 31/177 (17%), Positives = 54/177 (30%), Gaps = 58/177 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+        KL DFG A    +   +D    +       Y  PE +    Y+  +D+WS
Sbjct: 146 NVFLDGKQNVKLGDFGLA----RILNHDTSFAKTFVGTPYYMSPEQMNRMSYNEKSDIWS 201

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             C+ +EL      F                L          KI   G++ R        
Sbjct: 202 LGCLLYELCALMPPFT---------AFSQKELA--------GKI-REGKFRR-------- 235

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                     P       +Y        ++ + +  +L+     RP+  + L +P +
Sbjct: 236 ---------IP------YRYS------DELNEIITRMLNLKDYHRPSVEEILENPLI 271

>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo sapiens} Length = 350

 Score = 65.5 bits (160), Expect = 4e-12
 Identities = 37/242 (15%), Positives = 72/242 (29%), Gaps = 62/242 (25%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLW 175
           +N+    D   +L DFG A    +   + ++  +       Y  PE+     Y+  +D+W
Sbjct: 154 QNIFLTKDGTVQLGDFGIA----RVLNSTVELARACIGTPYYLSPEICENKPYNNKSDIW 209

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           +  C+ +EL T    F+     +          M  L                       
Sbjct: 210 ALGCVLYELCTLKHAFE---AGS----------MKNL----------------------- 233

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
            +  I    F P++      Y        D+   +  +    P  RP+    L   ++  
Sbjct: 234 -VLKIISGSFPPVS----LHYS------YDLRSLVSQLFKRNPRDRPSVNSILEKGFI-- 280

Query: 296 GPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALK 355
               R     + +    E  +    +   +   A     G  +I+        + AA   
Sbjct: 281 --AKRIEKFLSPQLIAEEFCLKTFSKFGSQPIPAKRPASGQNSISVMPAQKITKPAAKYG 338

Query: 356 LP 357
           +P
Sbjct: 339 IP 340

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei} Length = 504

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 34/170 (20%), Positives = 57/170 (33%), Gaps = 61/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K+VDFG + +     +  + + T  Y  PEVL   KY+   D+WS   I + L  G   F
Sbjct: 189 KIVDFGLSSFFSKDYKLRDRLGTAYYIAPEVLKK-KYNEKCDVWSCGVIMYILLCGYPPF 247

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                    +++  +                                         + KV
Sbjct: 248 -------GGQNDQDI-----------------------------------------IKKV 259

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              KY F+         +AK+    +  +L +   KR TA + L+  W+ 
Sbjct: 260 EKGKYYFDFNDWKNISDEAKE---LIKLMLTYDYNKRCTAEEALNSRWIK 306

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A* Length = 494

 Score = 65.9 bits (161), Expect = 4e-12
 Identities = 48/231 (20%), Positives = 77/231 (33%), Gaps = 69/231 (29%)

Query: 134 KLVDFGNAC--WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K+VDFG +      K+    + T  Y  PEVL   KY    D+WS   I F L  G   F
Sbjct: 179 KIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYDEKCDVWSIGVILFILLAGYPPF 237

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                    + +  +                                         + KV
Sbjct: 238 -------GGQTDQEI-----------------------------------------LRKV 249

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSM 304
              KY F+          AKD    +  +L F  ++R +A Q L HPW+      +E  +
Sbjct: 250 EKGKYTFDSPEWKNVSEGAKD---LIKQMLQFDSQRRISAQQALEHPWIKEMCSKKESGI 306

Query: 305 AAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQEAAALK 355
                     ++ + +  ++  + A+        +  ASKL+S +E   L 
Sbjct: 307 ELPSLANAIENMRKFQNSQKLAQAALLY------M--ASKLTSQEETKELT 349

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II} Length = 345

 Score = 65.2 bits (159), Expect = 5e-12
 Identities = 34/177 (19%), Positives = 53/177 (29%), Gaps = 67/177 (37%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRC-------PEVLLGS--KYSTSADLWSFACICFEL 184
           KLVDFG +   +K    +      +        PEVL  +   Y    D WS   +   L
Sbjct: 210 KLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLL 269

Query: 185 ATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR 244
             G V F          ++                                         
Sbjct: 270 LMGAVPF-------PGVNDADT-------------------------------------- 284

Query: 245 FWPMNKVLVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              +++VL +K  F           A+D    L  +L+   ++R  A + L HPW+S
Sbjct: 285 ---ISQVLNKKLCFENPNYNVLSPLARD---LLSNLLNRNVDERFDAMRALQHPWIS 335

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens} Length = 365

 Score = 65.4 bits (159), Expect = 5e-12
 Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 5/79 (6%)

Query: 130 DVQCKLVDFGNACWTH-----KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFEL 184
                L+D G +           FT   +T  ++C E+L    ++   D +  A   + +
Sbjct: 219 SAGLALIDLGQSIDMKLFPKGTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCM 278

Query: 185 ATGDVLFDPHSGDNYDKDE 203
             G  +   + G     + 
Sbjct: 279 LFGTYMKVKNEGGECKPEG 297

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens} Length = 307

 Score = 64.7 bits (158), Expect = 6e-12
 Identities = 25/68 (36%), Positives = 34/68 (50%)

Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFEL 184
           LL A     K+ DFG AC      TN+  +  +  PEV  GS YS   D++S+  I +E+
Sbjct: 137 LLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEV 196

Query: 185 ATGDVLFD 192
            T    FD
Sbjct: 197 ITRRKPFD 204

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A* Length = 484

 Score = 65.5 bits (160), Expect = 6e-12
 Identities = 37/179 (20%), Positives = 56/179 (31%), Gaps = 61/179 (34%)

Query: 134 KLVDFGNAC--WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           +++DFG +      K+  + I T  Y  PEVL G  Y    D+WS   I + L +G   F
Sbjct: 169 RIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPF 227

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                     +E  +                                         + KV
Sbjct: 228 -------NGANEYDI-----------------------------------------LKKV 239

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
              KY F           AKD    +  +L +VP  R +A   L H W+    + +   
Sbjct: 240 EKGKYTFELPQWKKVSESAKD---LIRKMLTYVPSMRISARDALDHEWIQTYTKEQISV 295

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ... Length = 284

 Score = 63.4 bits (155), Expect = 1e-11
 Identities = 37/181 (20%), Positives = 59/181 (32%), Gaps = 50/181 (27%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           NLL     + K+ DFG +          +  T  Y  PE++ G  +    DLW    +C+
Sbjct: 144 NLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCY 203

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E   G   FD            H            R+I             + DL+    
Sbjct: 204 EFLVGMPPFD---------SPSHTETH--------RRI------------VNVDLK---- 230

Query: 243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG-PQLRE 301
              +P          F    +K   D +  +L + P +R      + HPW+ A   ++  
Sbjct: 231 ---FP---------PFLSDGSK---DLISKLLRYHPPQRLPLKGVMEHPWVKANSRRVLP 275

Query: 302 P 302
           P
Sbjct: 276 P 276

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens} Length = 343

 Score = 64.0 bits (156), Expect = 1e-11
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 64/244 (26%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-----YRCPEVLLGS-----------K 167
           N L  VD   KL+DFG A       T+ ++  Q     Y  PE +              K
Sbjct: 138 NFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSK 196

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
            S  +D+WS  CI + +  G   F              +   +  L      I       
Sbjct: 197 ISPKSDVWSLGCILYYMTYGKTPF------------QQIINQISKL----HAIIDPN--- 237

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
                                      + +F +   KD+ D L   L   P++R +  + 
Sbjct: 238 --------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 271

Query: 288 LSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSS 347
           L+HP++    Q    +  A    E    +  +          ++            +  +
Sbjct: 272 LAHPYVQ--IQTHPVNQMAKGTTEEMKYVLGQLVGLNSPNSILKAAKTLYEHYSGGESHN 329

Query: 348 DQEA 351
              +
Sbjct: 330 SSSS 333

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A* Length = 313

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 37/186 (19%), Positives = 59/186 (31%), Gaps = 62/186 (33%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-----YRCPEVLLGS-----------K 167
           N L  VD   KL+DFG A       T+ ++  Q     Y  PE +              K
Sbjct: 157 NFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSK 215

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
            S  +D+WS  CI + +  G   F              +   +  L      I       
Sbjct: 216 ISPKSDVWSLGCILYYMTYGKTPF------------QQIINQISKL----HAIIDPN--- 256

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
                                      + +F +   KD+ D L   L   P++R +  + 
Sbjct: 257 --------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 290

Query: 288 LSHPWM 293
           L+HP++
Sbjct: 291 LAHPYV 296

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7 Length = 387

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 38/226 (16%), Positives = 76/226 (33%), Gaps = 64/226 (28%)

Query: 134 KLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG A      +       T ++  PE++         D+W+   + + L +G    
Sbjct: 191 KIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSG---L 247

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P +G++ D +                                             +  V
Sbjct: 248 SPFAGED-DLET--------------------------------------------LQNV 262

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSM 304
               ++F+E        +AKD   F+  +L   P KR T    L HPW+    +    ++
Sbjct: 263 KRCDWEFDEDAFSSVSPEAKD---FIKNLLQKEPRKRLTVHDALEHPWL----KGDHSNL 315

Query: 305 AAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQE 350
            +  P      I ++ + +  +  A +  +G +A   + +    QE
Sbjct: 316 TSRIPSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQE 361

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A* Length = 486

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 61/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG +       +  + I T  Y  PEVL G  Y    D+WS   I + L +G   F
Sbjct: 164 KIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPF 222

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                  Y K+E  +                                         + +V
Sbjct: 223 -------YGKNEYDI-----------------------------------------LKRV 234

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              KY F+         DAKD    +  +L F P  R TA QCL HPW+ 
Sbjct: 235 ETGKYAFDLPQWRTISDDAKD---LIRKMLTFHPSLRITATQCLEHPWIQ 281

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens} Length = 278

 Score = 61.8 bits (151), Expect = 4e-11
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 55/179 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRCPEVLLGSKYSTSADLWSFA 178
           NLL   ++  K+ DFG A  T  +  ++       T  Y  PE+   S +   +D+WS  
Sbjct: 142 NLLLTRNMNIKIADFGLA--TQLKMPHEKHYTLCGTPNYISPEIATRSAHGLESDVWSLG 199

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           C+ + L  G   FD          +         L     K+               D  
Sbjct: 200 CMFYTLLIGRPPFD---------TDTV----KNTL----NKV------------VLADYE 230

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                   P          F   +AKD+   +  +L   P  R + +  L HP+MS   
Sbjct: 231 -------MP---------SFLSIEAKDL---IHQLLRRNPADRLSLSSVLDHPFMSRNS 270

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A* Length = 336

 Score = 62.4 bits (152), Expect = 4e-11
 Identities = 46/215 (21%), Positives = 66/215 (30%), Gaps = 61/215 (28%)

Query: 134 KLVDFGNA-CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFD 192
           KL DFG A   T         T  Y  PEVL   KY  S D+WS   I + L  G   F 
Sbjct: 171 KLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG---FP 227

Query: 193 PHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL 252
           P   +        +                                           ++ 
Sbjct: 228 PFYSNTGQAISPGM-----------------------------------------KRRIR 246

Query: 253 VEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMA 305
           + +Y F          DAK +   L   L   P +R T  Q ++HPW+       +  + 
Sbjct: 247 LGQYGFPNPEWSEVSEDAKQLIRLL---LKTDPTERLTITQFMNHPWI------NQSMVV 297

Query: 306 AGEPRETEGSIPERKRREQEEREAMEVGVGNMAIN 340
              P  T   + E K    E +E M   +  M ++
Sbjct: 298 PQTPLHTARVLQEDKDHWDEVKEEMTSALATMRVD 332

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A* Length = 390

 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 40/244 (16%), Positives = 70/244 (28%), Gaps = 64/244 (26%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-----YRCPEVLLGS-----------K 167
           N L  VD   KL+DFG A       T+ ++  Q     Y  PE +              K
Sbjct: 185 NFLI-VDGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSK 243

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
            S  +D+WS  CI + +  G   F              +   +  L      I       
Sbjct: 244 ISPKSDVWSLGCILYYMTYGKTPF------------QQIINQISKL----HAIIDPN--- 284

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
                                      + +F +   KD+ D L   L   P++R +  + 
Sbjct: 285 --------------------------HEIEFPDIPEKDLQDVLKCCLKRDPKQRISIPEL 318

Query: 288 LSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSS 347
           L+HP++    Q    +  A    E    +  +          ++            +  +
Sbjct: 319 LAHPYVQ--IQTHPVNQMAKGTTEEMKYVLGQLVGLNSPNSILKAAKTLYEHYSGGESHN 376

Query: 348 DQEA 351
              +
Sbjct: 377 SSSS 380

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A* Length = 294

 Score = 61.8 bits (151), Expect = 5e-11
 Identities = 39/196 (19%), Positives = 59/196 (30%), Gaps = 61/196 (31%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC-------PEVLLGSKYSTSADLWS 176
           NL    D++ K+ DFG A         D + ++  C       PEVL    +S   D+WS
Sbjct: 145 NLFLNEDLEVKIGDFGLATKVE----YDGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 200

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI + L  G   F+                  E       +I     YS         
Sbjct: 201 IGCIMYTLLVGKPPFE---------TSCL----KETY----LRI-KKNEYS--------- 233

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
                     P               A  +   +  +L   P  RPT  + L+  + ++G
Sbjct: 234 ---------IP---------KHINPVAASL---IQKMLQTDPTARPTINELLNDEFFTSG 272

Query: 297 --PQLREPSMAAGEPR 310
             P     +     PR
Sbjct: 273 YIPARLPITCLTIPPR 288

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B* Length = 284

 Score = 61.5 bits (150), Expect = 5e-11
 Identities = 29/176 (16%), Positives = 43/176 (24%), Gaps = 62/176 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGSKYSTSADLWSF 177
           N+      Q K+ DFG          ND +      T +Y  PE +    Y    DL++ 
Sbjct: 152 NIFLVDTKQVKIGDFGLV----TSLKNDGKRTRSKGTLRYMSPEQISSQDYGKEVDLYAL 207

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             I  EL                                              F      
Sbjct: 208 GLILAELLHV---------------------------------------CDTAFETSKFF 228

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             +R      +       +D      K     L  +L   PE RP  ++ L    +
Sbjct: 229 TDLRDGIISDI-------FD------KKEKTLLQKLLSKKPEDRPNTSEILRTLTV 271

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens} Length = 396

 Score = 61.8 bits (150), Expect = 7e-11
 Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 43/188 (22%)

Query: 124 NLLAAV----DVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGS------- 166
           N++  +        KL DFG A    ++  +D Q      T +Y  P++   +       
Sbjct: 142 NIMRVIGEDGQSVYKLTDFGAA----RELEDDEQFVSLYGTEEYLHPDMYERAVLRKDHQ 197

Query: 167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR 225
            KY  + DLWS     +  ATG + F P  G   +K         E++     KI  G  
Sbjct: 198 KKYGATVDLWSIGVTFYHAATGSLPFRPFEGPRRNK---------EVM----YKIITGKP 244

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMA-DFLVPILDFVPEKRPTA 284
                  +  +   I      P++  L        R  + +    L  IL+   EK    
Sbjct: 245 SGAISGVQKAENGPIDWSGDMPVSCSL-------SRGLQVLLTPVLANILEADQEKCWGF 297

Query: 285 AQCLSHPW 292
            Q  +   
Sbjct: 298 DQFFAETS 305

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A* Length = 335

 Score = 61.6 bits (150), Expect = 8e-11
 Identities = 41/210 (19%), Positives = 64/210 (30%), Gaps = 63/210 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC-------PEVLLGSKYSTSADLWS 176
           NL    D++ K+ DFG A         D + ++  C       PEVL    +S   D+WS
Sbjct: 171 NLFLNEDLEVKIGDFGLATKVEY----DGERKKVLCGTPNYIAPEVLSKKGHSFEVDVWS 226

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             CI + L  G   F+                  E       +I     YS         
Sbjct: 227 IGCIMYTLLVGKPPFE---------TSCL----KETY----LRI-KKNEYS--------- 259

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
                     P               A  +   +  +L   P  RPT  + L+  + ++G
Sbjct: 260 ---------IP---------KHINPVAASL---IQKMLQTDPTARPTINELLNDEFFTSG 298

Query: 297 --PQLREPSMAAGEPRET--EGSIPERKRR 322
             P     +     PR +    S+    R+
Sbjct: 299 YIPARLPITCLTIPPRFSIAPSSLDPSNRK 328

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B* Length = 389

 Score = 61.5 bits (149), Expect = 1e-10
 Identities = 30/193 (15%), Positives = 55/193 (28%), Gaps = 36/193 (18%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC--------------PEVLLGSK-- 167
           ++L +VD +  L    +         +  Q ++                 PEVL  +   
Sbjct: 158 HILISVDGKVYLSGLRSNL----SMISHGQRQRVVHDFPKYSVKVLPWLSPEVLQQNLQG 213

Query: 168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS 227
           Y   +D++S      ELA G V   P        D     +++E L      +       
Sbjct: 214 YDAKSDIYSVGITACELANGHV---PFK------DMPATQMLLEKLNGTVPCLLDTSTIP 264

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFV-------PEK 280
            +                  +        + +         F      FV       P+ 
Sbjct: 265 AEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDA 324

Query: 281 RPTAAQCLSHPWM 293
           RP+A+  L+H + 
Sbjct: 325 RPSASTLLNHSFF 337

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus} Length = 332

 Score = 61.1 bits (148), Expect = 1e-10
 Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 66/186 (35%)

Query: 124 NLLAAVDVQCKLVDFGNAC---------------WTHKQFTNDIQTRQYRCPEVLLGSKY 168
           N+   +D   K+ DFG                    +   T  + T+ Y  PE + G+ Y
Sbjct: 194 NIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNY 253

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR 228
           S   D++S   I FEL      F                  ME + ++        ++  
Sbjct: 254 SHKVDIFSLGLILFELLYS---FSTQ---------------MERVRII--TDVRNLKFPL 293

Query: 229 DFFNRHGDLRH-IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
            F  ++      ++ +                              L   P +RP A   
Sbjct: 294 LFTQKYPQEHMMVQDM------------------------------LSPSPTERPEATDI 323

Query: 288 LSHPWM 293
           + +   
Sbjct: 324 IENAIF 329

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A* Length = 310

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 25/167 (14%), Positives = 45/167 (26%), Gaps = 55/167 (32%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWSFACICFELAT 186
           KL D G      + F++             Y  PE +  + Y+  +D+WS  C+ +E+A 
Sbjct: 176 KLGDLGLG----RFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAA 231

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
               F       Y    +  +L  ++       +     YS +                 
Sbjct: 232 LQSPF-------YGDKMNLYSLCKKIEQCDYPPL-PSDHYSEEL---------------- 267

Query: 247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                                  +   ++  PEKRP           
Sbjct: 268 --------------------RQLVNMCINPDPEKRPDVTYVYDVAKR 294

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens} Length = 432

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 25/177 (14%), Positives = 52/177 (29%), Gaps = 61/177 (34%)

Query: 130 DVQCKLVDFGNACWTHKQFTNDIQ----------TRQYRCPEVLLGS---KYSTSADLWS 176
            ++  + DFG      K+                T  +  PE+L        + + D++S
Sbjct: 159 KIKAMISDFGLC----KKLAVGRHSFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFS 214

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
             C+ + + +            + K     A ++             G  S D  +    
Sbjct: 215 AGCVFYYVISEGSHP-------FGKSLQRQANILL------------GACSLDCLHPEKH 255

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                                  +  A+   + +  ++   P+KRP+A   L HP+ 
Sbjct: 256 E----------------------DVIAR---ELIEKMIAMDPQKRPSAKHVLKHPFF 287

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A Length = 325

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 44/227 (19%), Positives = 63/227 (27%), Gaps = 68/227 (29%)

Query: 134 KLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLLGSKYSTSADLWSFACICFELAT 186
           K++DFG A    +    D Q       T  Y  PE+L  + Y  S DLWS   I + + +
Sbjct: 149 KIIDFGFA----RLKPPDNQPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLS 204

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
           G V F          D          +                                 
Sbjct: 205 GQVPF-------QSHDRSLTCTSAVEI--------------------------------- 224

Query: 247 PMNKVLVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
            M K+    + F          +AKD+   L   L   P KR   +    + W+  G QL
Sbjct: 225 -MKKIKKGDFSFEGEAWKNVSQEAKDLIQGL---LTVDPNKRLKMSGLRYNEWLQDGSQL 280

Query: 300 REPSMAAGEPRETEGSIPERKRREQEEREAM----EVGVGNMAINGA 342
              S     P     S        +    A       G     ++ A
Sbjct: 281 --SSNPLMTPDILGSSGAAVHTCVKATFHAFNKYKREGFCLQNVDKA 325

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A Length = 304

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 37/169 (21%), Positives = 51/169 (30%), Gaps = 59/169 (34%)

Query: 134 KLVDFGNA-CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFD 192
            + DFG +    +   +    T  Y  PEVL    YS + D WS   I + L  G   F 
Sbjct: 149 MITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPF- 207

Query: 193 PHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL 252
                 Y++ E  L                                           K+ 
Sbjct: 208 ------YEETESKL-----------------------------------------FEKIK 220

Query: 253 VEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              Y+F           AKD    L   L+  P +R T  + LSHPW+ 
Sbjct: 221 EGYYEFESPFWDDISESAKDFICHL---LEKDPNERYTCEKALSHPWID 266

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A* Length = 676

 Score = 60.9 bits (147), Expect = 3e-10
 Identities = 34/169 (20%), Positives = 57/169 (33%), Gaps = 34/169 (20%)

Query: 134 KLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           K++D G A    K+            T QY  PE+L   KY+ + D WSF  + FE  TG
Sbjct: 164 KIIDLGYA----KELDQGELCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITG 219

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F P   +            ++  G +  K      +   + +  G ++    L    
Sbjct: 220 ---FRPFLPNW---------QPVQWHGKVREK---SNEHIVVYDDLTGAVKFSSVLPTPN 264

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
                      +   A  +  +L  +L +   +R T  Q  +     A 
Sbjct: 265 ---------HLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQAL 304

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 60.2 bits (146), Expect = 3e-10
 Identities = 34/172 (19%), Positives = 53/172 (30%), Gaps = 60/172 (34%)

Query: 134 KLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL+DFG        +       T ++  PEV  G       D+WS   + + L +G    
Sbjct: 297 KLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSG---L 353

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  G+N D +                                             +  V
Sbjct: 354 SPFGGEN-DDET--------------------------------------------LRNV 368

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
               ++ ++        D KD   F+  +L   P  R T  Q L HPW++ G
Sbjct: 369 KSCDWNMDDSAFSGISEDGKD---FIRKLLLADPNTRMTIHQALEHPWLTPG 417

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A Length = 342

 Score = 59.6 bits (145), Expect = 4e-10
 Identities = 37/180 (20%), Positives = 55/180 (30%), Gaps = 66/180 (36%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRC-------PEVLLGSKYSTSADLWSFACICFELAT 186
           ++ DFG A    KQ   +       C       PEVL    Y  + D+WS   + + + T
Sbjct: 160 RICDFGFA----KQLRAENGLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLT 215

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
           G   F     D                   P +I                          
Sbjct: 216 GYTPFANGPDDT------------------PEEI-------------------------- 231

Query: 247 PMNKVLVEKYDFNE-------RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
            + ++   K+  +          AKD+   +   L   P +R TAA  L HPW+    QL
Sbjct: 232 -LARIGSGKFSLSGGYWNSVSDTAKDLVSKM---LHVDPHQRLTAALVLRHPWIVHWDQL 287

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A* Length = 289

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 31/182 (17%), Positives = 58/182 (31%), Gaps = 56/182 (30%)

Query: 115 RRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSK-YSTSA 172
              S    ++  A+  V  K+ D G+   T        +   ++   EVL  +  +   A
Sbjct: 155 NAASEEGDEDDWASNKVMFKIGDLGHV--TRISSPQVEEGDSRFLANEVLQENYTHLPKA 212

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELL-GMMPRKIALGGRYSRDFF 231
           D+++ A      A  + L  P +GD             E+  G +PR   +    S++F 
Sbjct: 213 DIFALALTVVCAAGAEPL--PRNGD----------QWHEIRQGRLPR---IPQVLSQEF- 256

Query: 232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                                               + L  ++   PE+RP+A   + H 
Sbjct: 257 -----------------------------------TELLKVMIHPDPERRPSAMALVKHS 281

Query: 292 WM 293
            +
Sbjct: 282 VL 283

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7 Length = 321

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 31/170 (18%), Positives = 56/170 (32%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K+++FG A        F       +Y  PEV      ST+ D+WS   + + L +G    
Sbjct: 144 KIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG---I 200

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
           +P   +  ++                                              +  +
Sbjct: 201 NPFLAET-NQQI--------------------------------------------IENI 215

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           +  +Y F+E        +A D   F+  +L    + R TA++ L HPW+ 
Sbjct: 216 MNAEYTFDEEAFKEISIEAMD---FVDRLLVKERKSRMTASEALQHPWLK 262

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A* Length = 434

 Score = 59.4 bits (144), Expect = 5e-10
 Identities = 34/202 (16%), Positives = 62/202 (30%), Gaps = 78/202 (38%)

Query: 117 PSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-----------YRCPEVLLG 165
            SR T      A +++  + DFG      K+  +   + +           +R PE+L  
Sbjct: 151 SSRFTADQQTGAENLRILISDFGLC----KKLDSGQSSFRTNLNNPSGTSGWRAPELLEE 206

Query: 166 S-------KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR 218
           S       + + S D++S  C+ + + +                           G  P 
Sbjct: 207 SNNLQTKRRLTRSIDIFSMGCVFYYILSK--------------------------GKHP- 239

Query: 219 KIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFV- 277
               G +YSR+                   + ++   +  +E         +    D + 
Sbjct: 240 ---FGDKYSRE-------------------SNIIRGIFSLDEMKCLHDRSLIAEATDLIS 277

Query: 278 ------PEKRPTAAQCLSHPWM 293
                 P KRPTA + L HP  
Sbjct: 278 QMIDHDPLKRPTAMKVLRHPLF 299

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A Length = 321

 Score = 58.8 bits (143), Expect = 5e-10
 Identities = 37/174 (21%), Positives = 55/174 (31%), Gaps = 60/174 (34%)

Query: 134 KLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 215

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  GD   +                                              +  +
Sbjct: 216 SPFLGDTKQET---------------------------------------------LANI 230

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
               YDF+E         AKD   F+  +L     KR T  + L HPW++    
Sbjct: 231 TSVSYDFDEEFFSHTSELAKD---FIRKLLVKETRKRLTIQEALRHPWITPVDN 281

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens} Length = 317

 Score = 58.5 bits (142), Expect = 7e-10
 Identities = 29/195 (14%), Positives = 53/195 (27%), Gaps = 60/195 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------------TRQYRCPEVLLGSKY--- 168
           N+L   + Q  L+D G+            Q            T  YR PE+     +   
Sbjct: 164 NILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVI 223

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR 228
               D+WS  C+ + +  G+  +D                 M         +A+  + S 
Sbjct: 224 DERTDVWSLGCVLYAMMFGEGPYD-----------------MVFQKGDSVALAVQNQLS- 265

Query: 229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL 288
                             P +     ++         +   L  ++   P +RP     L
Sbjct: 266 -----------------IPQSP----RHS------SALWQLLNSMMTVDPHQRPHIPLLL 298

Query: 289 SHPWMSAGPQLREPS 303
           S       P   + +
Sbjct: 299 SQLEALQPPAPGQHT 313

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ... Length = 283

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 37/170 (21%), Positives = 57/170 (33%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 152 KLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 208

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  G+                    ++                            +  +
Sbjct: 209 SPFLGET------------------KQET---------------------------LTNI 223

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
               YDF+E         AKD   F+  +L   P++R T AQ L H W+ 
Sbjct: 224 SAVNYDFDEEYFSNTSELAKD---FIRRLLVKDPKRRMTIAQSLEHSWIK 270

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii} Length = 285

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 34/171 (19%), Positives = 51/171 (29%), Gaps = 60/171 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG A      +  TN   T  Y  PEV      +   D+WS   + + L TG + F
Sbjct: 167 KIIDFGLAELFKSDEHSTNAAGTALYMAPEVFKR-DVTFKCDIWSAGVVMYFLLTGCLPF 225

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                       + +                                           K 
Sbjct: 226 -------TGTSLEEV-----------------------------------------QQKA 237

Query: 252 LVEKYDFNER------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
             ++ ++          A D    L  +L   PE+RP+AAQ L H W    
Sbjct: 238 TYKEPNYAVECRPLTPQAVD---LLKQMLTKDPERRPSAAQVLHHEWFKQA 285

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A* Length = 287

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 123 KNLL-----AAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG--SKYSTSADLW 175
            N+          V  K+ DFG +  +    +  +   Q+  PE +      Y+  AD +
Sbjct: 153 PNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPETIGAEEESYTEKADTY 212

Query: 176 SFACICFELATGDVLFD 192
           SFA I + + TG+  FD
Sbjct: 213 SFAMILYTILTGEGPFD 229

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X* Length = 348

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 33/180 (18%), Positives = 54/180 (30%), Gaps = 43/180 (23%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSK--YSTSADLWSF 177
           N+L   + + KL DFG    +       I+      ++  PE             D+WS 
Sbjct: 182 NILMDKNGRVKLSDFG---ESEYMVDKKIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSL 238

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
               + +    V F           +  L   +EL       I            R  ++
Sbjct: 239 GICLYVMFYNVVPFS---------LKISL---VELF----NNI------------RTKNI 270

Query: 238 R---HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                     +   NK      +F   +  D   FL   L   P +R T+   L H W++
Sbjct: 271 EYPLDRNHFLYPLTNKKSTCSNNFLSNEDID---FLKLFLRKNPAERITSEDALKHEWLA 327

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens} Length = 326

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 36/170 (21%), Positives = 55/170 (32%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 158 KIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 214

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  GD   ++                                             +  V
Sbjct: 215 SPFLGDT-KQET--------------------------------------------LANV 229

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
               Y+F +         AKD   F+  +L   P+KR T    L HPW+ 
Sbjct: 230 SAVNYEFEDEYFSNTSALAKD---FIRRLLVKDPKKRMTIQDSLQHPWIK 276

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A Length = 303

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 36/188 (19%), Positives = 58/188 (30%), Gaps = 64/188 (34%)

Query: 124 NLLAAVDVQCKLVDFG-----------------NACWTHKQFTNDIQTRQYRCPEVLLGS 166
           N+        K+ DFG                 N   +    T+ I T  Y   EVL G+
Sbjct: 146 NIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGT 205

Query: 167 K-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR 225
             Y+   D++S   I FE+          +G             + +L    +K+     
Sbjct: 206 GHYNEKIDMYSLGIIFFEMIYP-----FSTGME----------RVNIL----KKLRSV-- 244

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA 285
                            + F P         DF++   K     +  ++D  P KRP A 
Sbjct: 245 ----------------SIEFPP---------DFDDNKMKVEKKIIRLLIDHDPNKRPGAR 279

Query: 286 QCLSHPWM 293
             L+  W+
Sbjct: 280 TLLNSGWL 287

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens} Length = 349

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 44/183 (24%), Positives = 60/183 (32%), Gaps = 62/183 (33%)

Query: 124 NLL---AAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           NLL    A D   K+ DFG +     Q        T  Y  PE+L G  Y    D+WS  
Sbjct: 178 NLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVG 237

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            I + L  G   F+P   +  D+              M R+I                  
Sbjct: 238 IITYILLCG---FEPFYDERGDQF-------------MFRRILNC--------------- 266

Query: 239 HIRRLRFWPMNKVLVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                           +Y F          +AKD+   L   +   P+KR T  Q L HP
Sbjct: 267 ----------------EYYFISPWWDEVSLNAKDLVRKL---IVLDPKKRLTTFQALQHP 307

Query: 292 WMS 294
           W++
Sbjct: 308 WVT 310

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens} Length = 373

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 35/170 (20%), Positives = 60/170 (35%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG A      ++   +  T ++  PEV+     S   D+WS   I + L +G    
Sbjct: 229 KIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSG---L 285

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  GDN D +                                             +N +
Sbjct: 286 SPFLGDN-DAET--------------------------------------------LNNI 300

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           L  ++D  +        +AK+   F+  +L      R +A++ L HPW+S
Sbjct: 301 LACRWDLEDEEFQDISEEAKE---FISKLLIKEKSWRISASEALKHPWLS 347

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A* Length = 361

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 37/179 (20%), Positives = 57/179 (31%), Gaps = 60/179 (33%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL+DFG A       +F N   T ++  PE++        AD+WS   I + L +G    
Sbjct: 159 KLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG---A 215

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  GD   ++                                             +  +
Sbjct: 216 SPFLGDT-KQET--------------------------------------------LANI 230

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
               YDF+E         AKD   F+  +L     KR T  + L HPW++     +   
Sbjct: 231 TAVSYDFDEEFFSQTSELAKD---FIRKLLVKETRKRLTIQEALRHPWITPVDTQQAMV 286

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A* Length = 284

 Score = 55.6 bits (135), Expect = 4e-09
 Identities = 38/170 (22%), Positives = 56/170 (32%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL DFG A   +  + +     T  Y  PEVL    YS   D+W+   I + L  G   +
Sbjct: 148 KLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG---Y 204

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P     +D+D+  L                                           ++
Sbjct: 205 PPF----WDEDQHRL-----------------------------------------YAQI 219

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
               YD+          +AK + D +   L   P+KR TA Q L  PW+ 
Sbjct: 220 KAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWIC 266

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377

 Score = 56.2 bits (135), Expect = 5e-09
 Identities = 17/181 (9%), Positives = 41/181 (22%), Gaps = 64/181 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLL-----------GSKYSTSA 172
           +++        L  F +      +  + + +R +  PE+              +  + S 
Sbjct: 236 DIVLDQRGGVFLTGFEHLVRDGARVVSSV-SRGFEPPELEARRATISYHRDRRTLMTFSF 294

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D W+   + + +   D+   P + D                                   
Sbjct: 295 DAWALGLVIYWIWCADL---PITKDAALG------------------------------- 320

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                             +     +  +   +     L   L +  E R    Q +  P 
Sbjct: 321 --------------GSEWIFRSCKNIPQ-PVR---ALLEGFLRYPKEDRLLPLQAMETPE 362

Query: 293 M 293
            
Sbjct: 363 Y 363

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A* Length = 277

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 33/170 (19%), Positives = 49/170 (28%), Gaps = 61/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL+DFG A      K     + T  Y  P+VL G  Y    D WS   + + L  G   F
Sbjct: 149 KLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEG-LYGPECDEWSAGVMMYVLLCGYPPF 207

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                      +  +                                         M K+
Sbjct: 208 -------SAPTDSEV-----------------------------------------MLKI 219

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
               + F E+        A+     +  +L   P++R T+ Q L H W  
Sbjct: 220 REGTFTFPEKDWLNVSPQAES---LIRRLLTKSPKQRITSLQALEHEWFE 266

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A Length = 328

 Score = 55.8 bits (135), Expect = 6e-09
 Identities = 44/184 (23%), Positives = 64/184 (34%), Gaps = 67/184 (36%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----------YRCPEVLLGSKYS-TSA 172
           NLL   D+  K+ DFG        F+N+               Y  PE+  G KY     
Sbjct: 144 NLLLDADMNIKIADFG--------FSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPEV 195

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D+WS   I + L +G + FD   G N          + EL      ++ L G+Y      
Sbjct: 196 DVWSLGVILYTLVSGSLPFD---GQN----------LKELR----ERV-LRGKY------ 231

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                    R+ F+                + D  + L   L   P KR T  Q +   W
Sbjct: 232 ---------RIPFYM---------------STDCENLLKRFLVLNPIKRGTLEQIMKDRW 267

Query: 293 MSAG 296
           ++AG
Sbjct: 268 INAG 271

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A* Length = 327

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 36/170 (21%), Positives = 58/170 (34%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K+VDFG +       +    + T +Y  PE+L     +T+ D+W+   I + L T     
Sbjct: 174 KIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTH---T 230

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P  G++ +++                                                +
Sbjct: 231 SPFVGED-NQET--------------------------------------------YLNI 245

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                D++E         A D   F+  +L   PEKRPTA  CLSH W+ 
Sbjct: 246 SQVNVDYSEETFSSVSQLATD---FIQSLLVKNPEKRPTAEICLSHSWLQ 292

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 3fpq_A Length = 290

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 25/170 (14%), Positives = 54/170 (31%), Gaps = 47/170 (27%)

Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACICFE 183
            +       K+ D G A      F   +  T ++  PE+    KY  S D+++F     E
Sbjct: 163 FITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMY-EEKYDESVDVYAFGMCMLE 221

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           +AT +    P+S      +  + A +         +    G                   
Sbjct: 222 MATSEY---PYS------ECQNAAQIY--------RRVTSG------------------- 245

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                    V+   F++    ++ + +   +    ++R +    L+H + 
Sbjct: 246 ---------VKPASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 286

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A* Length = 287

 Score = 55.3 bits (134), Expect = 7e-09
 Identities = 43/170 (25%), Positives = 59/170 (34%), Gaps = 61/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           K++DFG +       +  + I T  Y  PEVL G  Y    D+WS   I + L +G   F
Sbjct: 164 KIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPF 222

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
                  Y K+E  +                                         + +V
Sbjct: 223 -------YGKNEYDI-----------------------------------------LKRV 234

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              KY F+         DAKD+   +   L F P  R TA QCL HPW+ 
Sbjct: 235 ETGKYAFDLPQWRTISDDAKDLIRKM---LTFHPSLRITATQCLEHPWIQ 281

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A* Length = 309

 Score = 55.4 bits (134), Expect = 7e-09
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF---TNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           NLL       K+ DFG +      F    +   T ++  PEVL     +  +D++SF  I
Sbjct: 169 NLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVI 228

Query: 181 CFELATGDVLFD 192
            +ELAT    + 
Sbjct: 229 LWELATLQQPWG 240

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C Length = 400

 Score = 55.9 bits (135), Expect = 7e-09
 Identities = 42/206 (20%), Positives = 67/206 (32%), Gaps = 62/206 (30%)

Query: 134 KLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL DFG A    +H   T    T  Y  PEVL   KY  S D+WS   I + L  G   +
Sbjct: 204 KLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG---Y 260

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P   ++       +                                           ++
Sbjct: 261 PPFYSNHGLAISPGM-----------------------------------------KTRI 279

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSM 304
            + +Y+F          + K +   L   L   P +R T  + ++HPW+       + + 
Sbjct: 280 RMGQYEFPNPEWSEVSEEVKMLIRNL---LKTEPTQRMTITEFMNHPWI------MQSTK 330

Query: 305 AAGEPRETEGSIPERKRREQEEREAM 330
               P  T   + E K R ++ +E M
Sbjct: 331 VPQTPLHTSRVLKEDKERWEDVKEEM 356

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A Length = 361

 Score = 55.4 bits (134), Expect = 8e-09
 Identities = 40/212 (18%), Positives = 64/212 (30%), Gaps = 47/212 (22%)

Query: 134 KLVDFG--NACWTHKQFTNDIQTRQYRCPEVLLGSKYS-TSADLWSFACICFELATGDVL 190
           K+ DFG   +   H Q  + + T  Y  PEVLL  +Y    AD+WS     + +  G   
Sbjct: 158 KICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYP 217

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F+         D +             ++I L  +YS                   P   
Sbjct: 218 FE---------DPE----EPRDYRKTIQRI-LSVKYS------------------IP--- 242

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG--PQLREPSMAAGE 308
                      +   +   +  I    P  R +  +  +H W        L   S    +
Sbjct: 243 ----DDIRISPECCHL---ISRIFVADPATRISIPEIKTHSWFLKNLPADLMNESNTGSQ 295

Query: 309 PRETEGSIPERKRREQEEREAMEVGVGNMAIN 340
            +E E  +       Q   EA    V N  ++
Sbjct: 296 FQEPEQPMQSLDTIMQIISEATIPAVRNRCLD 327

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A* Length = 303

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 43/180 (23%), Positives = 65/180 (36%), Gaps = 62/180 (34%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+L +   + KL DFG A     Q T+    R        +  PEV+  S Y + AD+WS
Sbjct: 149 NVLLSEHGEVKLADFGVA----GQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKADIWS 204

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGGRYSRDFFNRH 234
                 ELA G+    PHS  +           M++L ++P+     L G YS+      
Sbjct: 205 LGITAIELARGE---PPHSELH----------PMKVLFLIPKNNPPTLEGNYSKPL---- 247

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                                            +F+   L+  P  RPTA + L H ++ 
Sbjct: 248 --------------------------------KEFVEACLNKEPSFRPTAKELLKHKFIL 275

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A* Length = 299

 Score = 54.7 bits (132), Expect = 1e-08
 Identities = 29/197 (14%), Positives = 53/197 (26%), Gaps = 66/197 (33%)

Query: 124 NLLAAVDVQCKLVDFGNAC---------------WTHKQFTNDIQTRQYRCPEVLLGSKY 168
           N+   +D   K+ DFG                    + + T  + T+ Y  PE + G+ Y
Sbjct: 148 NIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSY 207

Query: 169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR 228
           S   D++S   I FEL        P S              +  L           ++  
Sbjct: 208 SHKVDIFSLGLILFELLY------PFSTQM---------ERVRTL-----TDVRNLKFPP 247

Query: 229 DFFNRHGDLRH-IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
            F  ++      ++ +                              L   P +RP A   
Sbjct: 248 LFTQKYPCEYVMVQDM------------------------------LSPSPMERPEAINI 277

Query: 288 LSHPWMSAGPQLREPSM 304
           + +          +  +
Sbjct: 278 IENAVFEDLDFPGKTVL 294

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A Length = 419

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 38/186 (20%), Positives = 56/186 (30%), Gaps = 65/186 (34%)

Query: 124 NLLAAV---DVQCKLVDFGNA-CWTHKQFTNDI-QTRQYRCPEVLLGS---KYSTSADLW 175
           N+L +    D   K+ DFG++           +  T  Y  PEVL+      Y+ + D W
Sbjct: 269 NVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCW 328

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S   I F   +G   + P S                    +  +I  G            
Sbjct: 329 SLGVILFICLSG---YPPFSEHRTQVS-------------LKDQITSG------------ 360

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNE-------RDAKDMADFLVPILDFVPEKRPTAAQCL 288
                              KY+F           A D+   L   L   P+ R T  + L
Sbjct: 361 -------------------KYNFIPEVWAEVSEKALDLVKKL---LVVDPKARFTTEEAL 398

Query: 289 SHPWMS 294
            HPW+ 
Sbjct: 399 RHPWLQ 404

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} Length = 271

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 133 CKLVDFGNAC-WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
            K+ DFG A  W      +      +  PEV+  S +S  +D+WS+  + +EL TG+V F
Sbjct: 155 LKITDFGLAREWHRTTKMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPF 214

Query: 192 D 192
            
Sbjct: 215 R 215

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens} Length = 444

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 40/175 (22%), Positives = 56/175 (32%), Gaps = 69/175 (39%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRC-------PEVLLGSKYSTSADLWSFACICFELAT 186
           KL DFG A     +   + Q             PEVL    Y    DLW+   I + L  
Sbjct: 153 KLADFGLA----IEVEGEQQAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLV 208

Query: 187 GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW 246
           G   + P     +D+D+  L                                        
Sbjct: 209 G---YPPF----WDEDQHRL---------------------------------------- 221

Query: 247 PMNKVLVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              ++    YDF          +AKD+ + +   L   P KR TAA+ L HPW+S
Sbjct: 222 -YQQIKAGAYDFPSPEWDTVTPEAKDLINKM---LTINPSKRITAAEALKHPWIS 272

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.9 bits (131), Expect = 3e-08
 Identities = 47/276 (17%), Positives = 89/276 (32%), Gaps = 70/276 (25%)

Query: 88  RQNDSVVNNESSRDNEVKNTSQGVKGHRR---PSRATRKNLLAAVDVQCKLVDFGNACWT 144
            Q D    + S   + +K     ++   R    S+     LL  ++VQ            
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--------KA 258

Query: 145 HKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDED 204
              F  ++      C  +LL +++    D  S A       T  +  D HS      DE 
Sbjct: 259 WNAF--NLS-----CK-ILLTTRFKQVTDFLSAA------TTTHISLDHHS-MTLTPDEV 303

Query: 205 HLALMMELLGM------------MPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL 252
             +L+++ L               PR++++     RD         + + +    +  ++
Sbjct: 304 -KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT---WDNWKHVNCDKLTTII 359

Query: 253 ---VEKYDFNE-RDA-KDMADFL--VPILDFVPEKRPTAAQCLSHPW--------MSAGP 297
              +   +  E R     ++ F     I    P         LS  W        M    
Sbjct: 360 ESSLNVLEPAEYRKMFDRLSVFPPSAHI----PTIL------LSLIWFDVIKSDVMVVVN 409

Query: 298 QLREPSMAAGEPRETEGSIPE---RKRREQEEREAM 330
           +L + S+   +P+E+  SIP      + + E   A+
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A* Length = 323

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 27/212 (12%), Positives = 51/212 (24%), Gaps = 55/212 (25%)

Query: 124 NLLAAVDVQCKLVDFG-NACWTHKQFTNDIQTR----QYRCPEVLLGSKYS-TSADLWSF 177
           NLL       K+ DFG    + +      +        Y  PE+L   ++     D+WS 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             +   +  G++ +D                  E              Y   +       
Sbjct: 195 GIVLTAMLAGELPWD-----------QPSDSCQEY-----SDWKEKKTYLNPWKKIDSAP 238

Query: 238 RH-IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
              + +                              IL   P  R T        W +  
Sbjct: 239 LALLHK------------------------------ILVENPSARITIPDIKKDRWYNKP 268

Query: 297 --PQLREPSMAAGEPRETEGSIPERKRREQEE 326
                + P + +G   E+     +  +   + 
Sbjct: 269 LKKGAKRPRVTSGGVSESPSGFSKHIQSNLDF 300

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens} Length = 318

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 39/193 (20%), Positives = 54/193 (27%), Gaps = 66/193 (34%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG-NACWTH-KQFTNDIQTRQYRCPEVL-----L 164
           HR  +PS     N+L     Q KL DFG +      K          Y  PE +      
Sbjct: 148 HRDVKPS-----NILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPT 202

Query: 165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR----KI 220
              Y   AD+WS      ELATG     P+                E+L  + +     +
Sbjct: 203 KPDYDIRADVWSLGISLVELATGQF---PYKNCK---------TDFEVLTKVLQEEPPLL 250

Query: 221 ALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK 280
                +S DF                                      F+   L     K
Sbjct: 251 PGHMGFSGDF------------------------------------QSFVKDCLTKDHRK 274

Query: 281 RPTAAQCLSHPWM 293
           RP   + L H ++
Sbjct: 275 RPKYNKLLEHSFI 287

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A* Length = 299

 Score = 53.5 bits (129), Expect = 3e-08
 Identities = 37/211 (17%), Positives = 62/211 (29%), Gaps = 79/211 (37%)

Query: 134 KLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP 193
           KL DFG A                   E   G KY  S D+WS   I + L  G   + P
Sbjct: 160 KLTDFGFA------------------KETT-GEKYDKSCDMWSLGVIMYILLCG---YPP 197

Query: 194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV 253
              ++       +                                           ++ +
Sbjct: 198 FYSNHGLAISPGM-----------------------------------------KTRIRM 216

Query: 254 EKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAA 306
            +Y+F          + K +   L   L   P +R T  + ++HPW+       + +   
Sbjct: 217 GQYEFPNPEWSEVSEEVKMLIRNL---LKTEPTQRMTITEFMNHPWI------MQSTKVP 267

Query: 307 GEPRETEGSIPERKRREQEEREAMEVGVGNM 337
             P  T   + E K R ++ +E M   +  M
Sbjct: 268 QTPLHTSRVLKEDKERWEDVKEEMTSALATM 298

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B Length = 362

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 38/170 (22%), Positives = 56/170 (32%), Gaps = 60/170 (35%)

Query: 134 KLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLF 191
           KL DFG A   +  + +     T  Y  PEVL    YS   D+W+   I + L  G   +
Sbjct: 171 KLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVG---Y 227

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
            P     +D+D+  L                                           ++
Sbjct: 228 PPF----WDEDQHRL-----------------------------------------YAQI 242

Query: 252 LVEKYDFNER-------DAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
               YD+          +AK + D +   L   P+KR TA Q L  PW+ 
Sbjct: 243 KAGAYDYPSPEWDTVTPEAKSLIDSM---LTVNPKKRITADQALKVPWIC 289

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A* Length = 322

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 48/231 (20%), Positives = 68/231 (29%), Gaps = 80/231 (34%)

Query: 124 NLL---AAVDVQCKLVDFGNACWTHKQFTNDIQTRQ------YRCPEVLLGS---KYSTS 171
           N+L      D   K+ DFG++    K        R       Y  PEVL+      Y+ +
Sbjct: 144 NVLLSSQEEDCLIKITDFGHS----KILGETSLMRTLCGTPTYLAPEVLVSVGTAGYNRA 199

Query: 172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF 231
            D WS   I F   +G   + P S                    +  +I  G        
Sbjct: 200 VDCWSLGVILFICLSG---YPPFSEHRTQVS-------------LKDQITSG-------- 235

Query: 232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNER-------DAKDMADFLVP-ILDFVPEKRPT 283
                                  KY+F           A D    LV  +L   P+ R T
Sbjct: 236 -----------------------KYNFIPEVWAEVSEKALD----LVKKLLVVDPKARFT 268

Query: 284 AAQCLSHPWMSAGPQLREPSMAAGEPRETEG-----SIPERKRREQEEREA 329
             + L HPW+      R+      E  E+       + P   R+   E EA
Sbjct: 269 TEEALRHPWLQDEDMKRKFQDLLSEENESTALPQVLAQPSTSRKRPREGEA 319

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A* Length = 298

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 35/185 (18%), Positives = 53/185 (28%), Gaps = 66/185 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGS------KYSTSADLW 175
           N+L   D+  KL DFG +C     ++      T  Y  PE++  S       Y    D+W
Sbjct: 154 NILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMW 213

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S   I + L  G     P                          +               
Sbjct: 214 STGVIMYTLLAG---SPPFWHRK------------------QMLM--------------- 237

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNE-------RDAKDMADFLVPILDFVPEKRPTAAQCL 288
                       +  ++   Y F            KD+       L   P+KR TA + L
Sbjct: 238 ------------LRMIMSGNYQFGSPEWDDYSDTVKDLVSRF---LVVQPQKRYTAEEAL 282

Query: 289 SHPWM 293
           +HP+ 
Sbjct: 283 AHPFF 287

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A* Length = 327

 Score = 52.3 bits (126), Expect = 7e-08
 Identities = 43/235 (18%), Positives = 66/235 (28%), Gaps = 77/235 (32%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFG---NACWTHKQFTNDIQTRQYRCPEVLLGSK- 167
           HR  +PS     N+L       KL DFG       +  + T D   R Y  PE +  S  
Sbjct: 149 HRDIKPS-----NILLDRSGNIKLCDFGISGQLVDSIAK-TRDAGCRPYMAPERIDPSAS 202

Query: 168 ---YSTSADLWSFACICFELATGDV-LFDPHSGDNYDKDEDHLALMMELLGMMPR----- 218
              Y   +D+WS     +ELATG       +S             + + L  + +     
Sbjct: 203 RQGYDVRSDVWSLGITLYELATGRFPYPKWNS-------------VFDQLTQVVKGDPPQ 249

Query: 219 -KIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFV 277
              +    +S  F                                     +F+   L   
Sbjct: 250 LSNSEEREFSPSF------------------------------------INFVNLCLTKD 273

Query: 278 PEKRPTAAQCLSHPWMSAGPQLREPSMAA-----GEPRETEGSIPERKRREQEER 327
             KRP   + L HP++    + R   +A       +      S P          
Sbjct: 274 ESKRPKYKELLKHPFILMYEE-RAVEVACYVCKILDQMPATPSSPMYVDHHHHHH 327

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens} Length = 305

 Score = 52.3 bits (126), Expect = 8e-08
 Identities = 39/197 (19%), Positives = 61/197 (30%), Gaps = 55/197 (27%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQ----YRCPEVLLGSK-YS-TSADLWS 176
           NLL       K+   G A   H    +D  +T Q    ++ PE+  G   +S    D+WS
Sbjct: 139 NLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWS 198

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
                + + TG   F+   GDN          + +L       I   G Y+         
Sbjct: 199 AGVTLYNITTGLYPFE---GDN----------IYKLF----ENI-GKGSYA--------- 231

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
                     P                 D+   L  +L++ P KR +  Q   H W    
Sbjct: 232 ---------IP---------GDCGPPLSDL---LKGMLEYEPAKRFSIRQIRQHSWFRKK 270

Query: 297 PQLREPSMAAGEPRETE 313
               E  +      +T+
Sbjct: 271 HPPAEAPVPIPPSPDTK 287

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A Length = 290

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 36/195 (18%), Positives = 58/195 (29%), Gaps = 72/195 (36%)

Query: 114 HR--RPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLG 165
           HR  +PS     N+L     Q K+ DFG +        +D+        + Y  PE +  
Sbjct: 133 HRDVKPS-----NVLINALGQVKMCDFGIS----GYLVDDVAKDIDAGCKPYMAPERINP 183

Query: 166 ----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK-- 219
                 YS  +D+WS      ELA     F P+                + L  +  +  
Sbjct: 184 ELNQKGYSVKSDIWSLGITMIELAILR--F-PYDSWGTP---------FQQLKQVVEEPS 231

Query: 220 -IALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVP 278
                 ++S +F                                     DF    L    
Sbjct: 232 PQLPADKFSAEF------------------------------------VDFTSQCLKKNS 255

Query: 279 EKRPTAAQCLSHPWM 293
           ++RPT  + + HP+ 
Sbjct: 256 KERPTYPELMQHPFF 270

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens} Length = 312

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 36/198 (18%), Positives = 63/198 (31%), Gaps = 61/198 (30%)

Query: 124 NLLAAVDVQC---KLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKYS-TSADLWSFA 178
           N+L  +D++    KL+DFG+    H +   D   TR Y  PE +   +Y    A +WS  
Sbjct: 169 NIL--IDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISRHQYHALPATVWSLG 226

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            + +++  GD+ F+          +              ++I L                
Sbjct: 227 ILLYDMVCGDIPFE---------RD--------------QEI-LEAEL------------ 250

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
                                   + D    +   L   P  RP+  + L  PWM    +
Sbjct: 251 ---HFPAHV---------------SPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPAE 292

Query: 299 LREPSMAAGEPRETEGSI 316
               + + G P     S+
Sbjct: 293 DVPLNPSKGGPAPLAWSL 310

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ... Length = 276

 Score = 51.0 bits (123), Expect = 2e-07
 Identities = 24/180 (13%), Positives = 41/180 (22%), Gaps = 53/180 (29%)

Query: 124 NLLAAVDVQCKLVDFG-NACWTHKQFTNDIQTR----QYRCPEVLLGSKYS-TSADLWSF 177
           NLL       K+ DFG    + +      +        Y  PE+L   ++     D+WS 
Sbjct: 135 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 194

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             +   +  G++ +D                  E              Y   +       
Sbjct: 195 GIVLTAMLAGELPWD-----------QPSDSCQEY-----SDWKEKKTYLNPWKKIDSAP 238

Query: 238 RH-IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG 296
              + +                              IL   P  R T        W +  
Sbjct: 239 LALLHK------------------------------ILVENPSARITIPDIKKDRWYNKP 268

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A* Length = 276

 Score = 50.7 bits (122), Expect = 2e-07
 Identities = 38/191 (19%), Positives = 59/191 (30%), Gaps = 68/191 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----------YRCPEVLLGSKYS-TSA 172
           N+L    +  K+ DFG         +N +   +          Y  PEV+ G  Y+    
Sbjct: 141 NVLLDAHMNAKIADFG--------LSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEV 192

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D+WS   I + L  G + FD    ++          +  L     +KI  GG +      
Sbjct: 193 DIWSCGVILYALLCGTLPFD---DEH----------VPTLF----KKI-RGGVFY----- 229

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                         P         ++  R    +   L+ +L   P KR T      H W
Sbjct: 230 -------------IP---------EYLNRSVATL---LMHMLQVDPLKRATIKDIREHEW 264

Query: 293 MSAG-PQLREP 302
                P    P
Sbjct: 265 FKQDLPSYLFP 275

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ... Length = 320

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 59/185 (31%)

Query: 134 KLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKYS-TSADLWSFACICFELATGDVLF 191
           KL+DFG+          D   TR Y  PE +   +Y   SA +WS   + +++  GD+ F
Sbjct: 190 KLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPF 249

Query: 192 DPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV 251
           +          +               +I + G+                  R       
Sbjct: 250 E---------HD--------------EEI-IRGQV---------------FFRQRV---- 266

Query: 252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG---PQLREPSMAAGE 308
                      + +    +   L   P  RPT  +  +HPWM       +  E  + +  
Sbjct: 267 -----------SSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQETAEIHLHSLS 315

Query: 309 PRETE 313
           P  ++
Sbjct: 316 PGPSK 320

>1uu3_A HPDK1, 3-phosphoinositide dependent protein kinase-1; PKB, inhibitor, LY333531, diabetes, cancer, transferase, serine/threonine-protein kinase; HET: SEP LY4; 1.7A {Homo sapiens} SCOP: d.144.1.7 PDB: 1okz_A* 1oky_A* 1uu7_A* 1uu8_A* 2biy_A* 3rwp_A* 2xch_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* ... Length = 310

 Score = 50.3 bits (121), Expect = 3e-07
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 13/73 (17%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ---------TRQYRCPEVLLGSKYSTSADL 174
           N+L   D+  ++ DFG A    K  + + +         T QY  PE+L       S+DL
Sbjct: 160 NILLNEDMHIQITDFGTA----KVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDL 215

Query: 175 WSFACICFELATG 187
           W+  CI ++L  G
Sbjct: 216 WALGCIIYQLVAG 228

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} PDB: 3kmw_A* 3rep_A* Length = 271

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKY---STSADLWSFAC 179
           ++++   D+  ++           Q    +    +  PE L          SAD+WSFA 
Sbjct: 142 RSVMIDEDMTARISMADVKF--SFQSPGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAV 199

Query: 180 ICFELATGDVLFD 192
           + +EL T +V F 
Sbjct: 200 LLWELVTREVPFA 212

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A Length = 351

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 37/164 (22%), Positives = 53/164 (32%), Gaps = 48/164 (29%)

Query: 134 KLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVL 190
           KL  FG A     +       + T  +  PEV+    Y    D+W    I F L +G + 
Sbjct: 173 KLGGFGVAIQLGESGLVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLP 232

Query: 191 FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK 250
           F       Y   E        L       I + G+Y     N           R W    
Sbjct: 233 F-------YGTKE-------RLF----EGI-IKGKYK---MNP----------RQWS--H 258

Query: 251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
           +           AK   D +  +L   P +R T  + L+HPW+ 
Sbjct: 259 I--------SESAK---DLVRRMLMLDPAERITVYEALNHPWLK 291

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe} Length = 336

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 34/184 (18%), Positives = 57/184 (30%), Gaps = 67/184 (36%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----------YRCPEVLLGSKYS-TSA 172
           NLL   ++  K+ DFG         +N +              Y  PEV+ G  Y+    
Sbjct: 138 NLLLDDNLNVKIADFG--------LSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGPEV 189

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D+WS   + + +  G + FD         DE     +  L     +K+     Y      
Sbjct: 190 DVWSCGIVLYVMLVGRLPFD---------DEF----IPNLF----KKV-NSCVYV----- 226

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                         P         DF    A+ +   +  ++   P +R T  +    PW
Sbjct: 227 -------------MP---------DFLSPGAQSL---IRRMIVADPMQRITIQEIRRDPW 261

Query: 293 MSAG 296
            +  
Sbjct: 262 FNVN 265

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} PDB: 3c4c_A* 3c4d_A* 3idp_A* 3ii5_A* 3d4q_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 2fb8_A* 4dbn_A* 1uwj_A* 1uwh_A* 3q96_A* Length = 289

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 8/78 (10%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLG---SKYSTSADL 174
            N+    D   K+ DFG A    +     QF     +  +  PEV+     + YS  +D+
Sbjct: 149 NNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDV 208

Query: 175 WSFACICFELATGDVLFD 192
           ++F  + +EL TG + + 
Sbjct: 209 YAFGIVLYELMTGQLPYS 226

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A Length = 316

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 41/183 (22%), Positives = 59/183 (32%), Gaps = 58/183 (31%)

Query: 134 KLVDFG------NACWTHKQFTNDIQTR----QYRCPEVLLG-----SKYSTSADLWSFA 178
           K+ DF                T ++ T     +Y  PEV+       S Y    DLWS  
Sbjct: 154 KICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLG 213

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            I + L +G   F    G +   D        +   M+   I  G               
Sbjct: 214 VILYILLSGYPPFVGRCGSDCGWDRGEACPACQ--NMLFESIQEG--------------- 256

Query: 239 HIRRLRFWPMNKVLVEKYDFNERD-------AKDMADFLVPILDFVPEKRPTAAQCLSHP 291
                           KY+F ++D       AKD+   L   L    ++R +AAQ L HP
Sbjct: 257 ----------------KYEFPDKDWAHISCAAKDLISKL---LVRDAKQRLSAAQVLQHP 297

Query: 292 WMS 294
           W+ 
Sbjct: 298 WVQ 300

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A Length = 365

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 38/186 (20%), Positives = 59/186 (31%), Gaps = 68/186 (36%)

Query: 124 NLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGS------KYSTSADLW 175
           N+L   ++Q +L DFG +C     ++      T  Y  PE+L  S       Y    DLW
Sbjct: 230 NILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLW 289

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           +   I F L  G   F       + + +  +                             
Sbjct: 290 ACGVILFTLLAGSPPF-------WHRRQILM----------------------------- 313

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNE-------RDAKDMADFLVP-ILDFVPEKRPTAAQC 287
                       +  ++  +Y F+           KD    L+  +L   PE R TA Q 
Sbjct: 314 ------------LRMIMEGQYQFSSPEWDDRSSTVKD----LISRLLQVDPEARLTAEQA 357

Query: 288 LSHPWM 293
           L HP+ 
Sbjct: 358 LQHPFF 363

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} Length = 413

 Score = 50.1 bits (119), Expect = 6e-07
 Identities = 16/198 (8%), Positives = 38/198 (19%), Gaps = 61/198 (30%)

Query: 124 NLLAAVDVQCKLVDFGNAC----WTHKQFTNDIQTRQYRCPEVLLGSK-----YSTSADL 174
           +++        L  F +                   +     +L   +      + + D 
Sbjct: 241 DIVLDQRGGVFLTGFEHLVRDGASAVSPIGRGFAPPETTAERMLPFGQHHPTLMTFAFDT 300

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           W+     + +   D+   P++ D               LG             +      
Sbjct: 301 WTLGLAIYWIWCADL---PNTDDA-------------ALGGSEWIFRSCKNIPQPV---- 340

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
             L  +                                 L +  E R    Q +  P   
Sbjct: 341 RAL--LEGF------------------------------LRYPKEDRLLPLQAMETPEYE 368

Query: 295 AGPQLREPSMAAGEPRET 312
                   ++   +    
Sbjct: 369 QLRTELSAALPLYQTDGE 386

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A* Length = 342

 Score = 49.8 bits (119), Expect = 6e-07
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ--------TRQYRCPEVLLGS------KY 168
           KN+L   +  C + D G A   H   T+ I         T++Y  PEVL  S      + 
Sbjct: 176 KNILVKKNGTCCIADLGLAV-RHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFES 234

Query: 169 STSADLWSFACICFELATGDVLFDPH 194
              AD+++   + +E+A    +   H
Sbjct: 235 FKRADIYAMGLVFWEIARRCSIGGIH 260

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens} Length = 335

 Score = 48.9 bits (117), Expect = 9e-07
 Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 74/231 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----------YRCPEVLLGSKYS-TSA 172
           N++ A D   KL+DFG            ++  +          Y  PEVL+G+ Y     
Sbjct: 160 NIVIAEDFTIKLIDFG--------SAAYLERGKLFYTFCGTIEYCAPEVLMGNPYRGPEL 211

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           ++WS     + L   +  F        ++                    +          
Sbjct: 212 EMWSLGVTLYTLVFEENPF-----CELEE-------------------TVEAAI------ 241

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                       +                 +K++   +  +L  VPE+R T  + ++ PW
Sbjct: 242 ---------HPPYLV---------------SKELMSLVSGLLQPVPERRTTLEKLVTDPW 277

Query: 293 MSAGPQLREPSMAAGEPR-ETEGSIPERKRREQEEREAMEVGVGNMAINGA 342
           ++    L + +        + E  +      E   R   +V        G 
Sbjct: 278 VTQPVNLADYTWEEVFRVNKPESGVLSAASLEMGNRSLSDVAQAQELCGGE 328

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQTR-------QYRCPEVLLGSK--YSTSADLW 175
           L+       K+ DFG +    K+               QY  PE++      Y  +AD+W
Sbjct: 154 LINTYSGVLKISDFGTS----KRLAGINPCTETFTGTLQYMAPEIIDKGPRGYGKAADIW 209

Query: 176 SFACICFELATG 187
           S  C   E+ATG
Sbjct: 210 SLGCTIIEMATG 221

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens} Length = 295

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 6/40 (15%), Positives = 16/40 (40%)

Query: 264 KDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
            +   F++   +  P+KR  A   L   ++    + ++  
Sbjct: 253 AEAKAFILKCFEPDPDKRACANDLLVDEFLKVSSKKKKTQ 292

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A* Length = 297

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 35/182 (19%), Positives = 57/182 (31%), Gaps = 64/182 (35%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+L  +D   KL DFG       Q T +   R        +  PEV+    Y    D+WS
Sbjct: 146 NILLGMDGSVKLTDFGFC----AQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWS 201

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR----KIALGGRYSRDFFN 232
              +  E+  G+    P+  +N           +  L ++      ++    + S  F  
Sbjct: 202 LGIMAIEMIEGEP---PYLNEN----------PLRALYLIATNGTPELQNPEKLSAIF-- 246

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                                              DFL   L+   EKR +A + L H +
Sbjct: 247 ----------------------------------RDFLNRCLEMDVEKRGSAKELLQHQF 272

Query: 293 MS 294
           + 
Sbjct: 273 LK 274

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens} Length = 337

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 39/214 (18%), Positives = 64/214 (29%), Gaps = 68/214 (31%)

Query: 124 NLLAAVDVQCKLVDFGNAC---------WTHKQFT---NDIQ---TRQYRCPEVL-LGSK 167
           NLL +     KL DFG+A          W+ ++      +I    T  YR PE++ L S 
Sbjct: 168 NLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSN 227

Query: 168 --YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR 225
                  D+W+  CI + L      F+  +                       +I + G+
Sbjct: 228 FPIGEKQDIWALGCILYLLCFRQHPFEDGA---------------------KLRI-VNGK 265

Query: 226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA 285
           YS                   P           ++         +  +L   PE+R + A
Sbjct: 266 YS------------------IP----------PHDTQYTVFHSLIRAMLQVNPEERLSIA 297

Query: 286 QCLSHPWMSAGPQLREPSMAAGEPRETEGSIPER 319
           + +      A  +   P     E  E  G     
Sbjct: 298 EVVHQLQEIAAARNVNPKSPITELLEQNGGYGSA 331

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A* Length = 321

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 36/189 (19%), Positives = 64/189 (33%), Gaps = 64/189 (33%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           ++L  +D + KL DFG       Q + D+  R+       +  PEV+  S Y+T  D+WS
Sbjct: 171 SILLTLDGRVKLSDFGFC----AQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVDIWS 226

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR----KIALGGRYSRDFFN 232
              +  E+  G+    P+  D+           ++ +  +      K+    + S     
Sbjct: 227 LGIMVIEMVDGEP---PYFSDS----------PVQAMKRLRDSPPPKLKNSHKVSPVL-- 271

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                                              DFL  +L   P++R TA + L HP+
Sbjct: 272 ----------------------------------RDFLERMLVRDPQERATAQELLDHPF 297

Query: 293 MSAGPQLRE 301
           +        
Sbjct: 298 LLQTGLPEC 306

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens} Length = 314

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 50/219 (22%), Positives = 76/219 (34%), Gaps = 75/219 (34%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLLGSKYSTSADLWS 176
           N+L   +   KL DFG A     Q T+ +  R        +  PEV+    Y+  AD+WS
Sbjct: 155 NILLNTEGHAKLADFGVA----GQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCVADIWS 210

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR----KIALGGRYSRDFFN 232
                 E+A G     P++  +           M  + M+P            +S +F  
Sbjct: 211 LGITAIEMAEGK---PPYADIH----------PMRAIFMIPTNPPPTFRKPELWSDNF-- 255

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                                              DF+   L   PE+R TA Q L HP+
Sbjct: 256 ----------------------------------TDFVKQCLVKSPEQRATATQLLQHPF 281

Query: 293 M-SAGP--QLREPSMAAGEPRETEGSIPERKRREQEERE 328
           + SA     LR+    A + +         KR+E ++RE
Sbjct: 282 VRSAKGVSILRDLINEAMDVK--------LKRQESQQRE 312

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A* Length = 303

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/179 (22%), Positives = 62/179 (34%), Gaps = 47/179 (26%)

Query: 124 NLLAAVDVQCKLVDFG-NACWTHKQFTNDIQTRQ-------YRCPEVLL-GSKYSTSADL 174
           N+L   D   ++ DFG +A           + R+       +  PEV+     Y   AD+
Sbjct: 151 NILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADI 210

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WSF     ELATG     P+               M++L +  +                
Sbjct: 211 WSFGITAIELATGA---APYH------KYPP----MKVLMLTLQNDP------------- 244

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                   L     +K +++KY       K     +   L   PEKRPTAA+ L H + 
Sbjct: 245 ------PSLETGVQDKEMLKKY------GKSFRKMISLCLQKDPEKRPTAAELLRHKFF 291

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A* Length = 301

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 108 SQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-------TRQ 156
            +      +P+ A R    KN+L   + QC + D G A    +              T++
Sbjct: 123 IEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKR 182

Query: 157 YRCPEVLLGS------KYSTSADLWSFACICFELATGDVLFDP 193
           Y  PEVL  +            D+W+F  + +E+A   V    
Sbjct: 183 YMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGI 225

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens} Length = 298

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 38/179 (21%), Positives = 56/179 (31%), Gaps = 58/179 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ------YRCPEVLLGSK--YS-TSADL 174
           NLL   D   K+ DFG +        +D           +  PE L  ++  +S  + D+
Sbjct: 167 NLLVGEDGHIKIADFGVSNEFKG---SDALLSNTVGTPAFMAPESLSETRKIFSGKALDV 223

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           W+     +    G   F          DE     +M L      KI            + 
Sbjct: 224 WAMGVTLYCFVFGQCPFM---------DER----IMCLH----SKI------------KS 254

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             L         P         D  E D KD+   +  +LD  PE R    +   HPW+
Sbjct: 255 QAL----EFPDQP---------DIAE-DLKDL---ITRMLDKNPESRIVVPEIKLHPWV 296

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A* Length = 576

 Score = 47.9 bits (114), Expect = 3e-06
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ------YRCPEVLLGSKYSTSADLWSF 177
           N+L       ++ D G A             +       Y  PEV+   +Y+ S D W+ 
Sbjct: 316 NILLDDHGHIRISDLGLA----VHVPEGQTIKGRVGTVGYMAPEVVKNERYTFSPDWWAL 371

Query: 178 ACICFELATG 187
            C+ +E+  G
Sbjct: 372 GCLLYEMIAG 381

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus} Length = 476

 Score = 47.5 bits (113), Expect = 4e-06
 Identities = 35/184 (19%), Positives = 54/184 (29%), Gaps = 67/184 (36%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----------YRCPEVLLGSKYS-TSA 172
           N+L    +  K+ DFG         +N +   +          Y  PEV+ G  Y+    
Sbjct: 146 NVLLDAHMNAKIADFG--------LSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGPEV 197

Query: 173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN 232
           D+WS   I + L  G + FD         D+     +  L     +KI   G +      
Sbjct: 198 DIWSSGVILYALLCGTLPFD---------DDH----VPTLF----KKI-CDGIF------ 233

Query: 233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                        + +N                +   L  +L   P KR T      H W
Sbjct: 234 ---------YTPQY-LNP-----------SVISL---LKHMLQVDPMKRATIKDIREHEW 269

Query: 293 MSAG 296
               
Sbjct: 270 FKQD 273

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} Length = 337

 Score = 47.0 bits (112), Expect = 4e-06
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ--------TRQYRCPEVLLGS------KY 168
           KN+L   +  C + D G A       TN++         T++Y  PEVL  S      + 
Sbjct: 171 KNILVKKNGTCCIADLGLAV-KFISDTNEVDIPPNTRVGTKRYMPPEVLDESLNRNHFQS 229

Query: 169 STSADLWSFACICFELATGDVLFDPH 194
              AD++SF  I +E+A   V     
Sbjct: 230 YIMADMYSFGLILWEVARRCVSGGIV 255

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens} Length = 326

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 46/226 (20%), Positives = 74/226 (32%), Gaps = 74/226 (32%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLL-----GSKYSTS 171
           N+L   + + KLVDFG +     Q    +  R        +  PEV+       + Y   
Sbjct: 159 NVLLTENAEVKLVDFGVS----AQLDRTVGRRNTFIGTPYWMAPEVIACDENPDATYDFK 214

Query: 172 ADLWSFACICFELATGDV-LFDPHSGDNYDKDEDHLALMMELLGMMPRKIA---LGGRYS 227
           +DLWS      E+A G   L D H               M  L ++PR  A      ++S
Sbjct: 215 SDLWSLGITAIEMAEGAPPLCDMHP--------------MRALFLIPRNPAPRLKSKKWS 260

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
           + F                                      F+   L     +RP   Q 
Sbjct: 261 KKF------------------------------------QSFIESCLVKNHSQRPATEQL 284

Query: 288 LSHPWMSAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVG 333
           + HP++   P  R+  +   +  +      ++KR E++E E    G
Sbjct: 285 MKHPFIRDQPNERQVRIQLKDHID----RTKKKRGEKDETEYEYSG 326

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B Length = 543

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 8/87 (9%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKYSTSADLWSFAC 179
           N+L   D   ++ D G A    K      +       +  PE+LLG +Y  S D ++   
Sbjct: 319 NVLLDDDGNVRISDLGLAV-ELKAGQTKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGV 377

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHL 206
             +E+        P        +   L
Sbjct: 378 TLYEMIAARG---PFRARGEKVENKEL 401

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A* Length = 302

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 41/187 (21%), Positives = 65/187 (34%), Gaps = 69/187 (36%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ-------YRCPEVLL-----GSKYSTS 171
           N+L  ++   +L DFG +     +    +Q R        +  PEV++      + Y   
Sbjct: 147 NVLMTLEGDIRLADFGVSA----KNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTPYDYK 202

Query: 172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPR----KIALGGRYS 227
           AD+WS      E+A  +    PH   N           M +L  + +     +    ++S
Sbjct: 203 ADIWSLGITLIEMAQIE---PPHHELN----------PMRVLLKIAKSDPPTLLTPSKWS 249

Query: 228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC 287
            +F                                     DFL   LD  PE RP+AAQ 
Sbjct: 250 VEF------------------------------------RDFLKIALDKNPETRPSAAQL 273

Query: 288 LSHPWMS 294
           L HP++S
Sbjct: 274 LEHPFVS 280

>3pvu_A Beta-adrenergic receptor kinase 1; transferase, serine/threonine-protein kinase, ATP-binding, I membrane; HET: QRW; 2.48A {Bos taurus} PDB: 3psc_A* 3pvw_A* 1omw_A 1ym7_A 2bcj_A* 3cik_A 3krw_A* 3krx_A* 1bak_A Length = 695

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDI-QTRQYRCPEVLL-GSKYSTSADLWSFACIC 181
           N+L       ++ D G AC   K+  +    T  Y  PEVL  G  Y +SAD +S  C+ 
Sbjct: 322 NILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCML 381

Query: 182 FELATGDVLFDPHSGDNYDK 201
           F+L  G   F  H   +  +
Sbjct: 382 FKLLRGHSPFRQHKTKDKHE 401

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 2qlu_A* Length = 322

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 27/121 (22%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 109 QGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-----TRQYRC 159
            G+K   +P+ + R    KN+L   ++   + DFG A       +         TR+Y  
Sbjct: 142 PGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRYMA 201

Query: 160 PEVLLGS-----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG 214
           PEVL G+           D+++   + +ELA+     D    +     E+ +     L  
Sbjct: 202 PEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEEEIGQHPSLED 261

Query: 215 M 215
           M
Sbjct: 262 M 262

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A* Length = 345

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF-TNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N+L   +   KL D+G  C   K+       T        Y  PE+L G  Y  S D W+
Sbjct: 140 NVLLDSEGHIKLTDYG-MC---KEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 195

Query: 177 FACICFELATGDVLF--DPHSGDNYDKDEDHL 206
              + FE+  G   F     S +     ED+L
Sbjct: 196 LGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 227

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus} Length = 396

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 26/92 (28%), Positives = 36/92 (39%), Gaps = 13/92 (14%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF-TNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N+L   +   KL D+G  C   K+       T        Y  PE+L G  Y  S D W+
Sbjct: 183 NVLLDSEGHIKLTDYG-MC---KEGLRPGDTTSTFCGTPNYIAPEILRGEDYGFSVDWWA 238

Query: 177 FACICFELATGDVLF--DPHSGDNYDKDEDHL 206
              + FE+  G   F     S +     ED+L
Sbjct: 239 LGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYL 270

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens} Length = 310

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 17/88 (19%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRC-----------------PEVLLG 165
            N L   +    + DFG A     + T     R  +                  PE++ G
Sbjct: 137 HNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMING 196

Query: 166 SKYSTSADLWSFACICFELATGDVLFDP 193
             Y    D++SF  +  E+         
Sbjct: 197 RSYDEKVDVFSFGIVLCEIIGRVNADPD 224

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens} Length = 319

 Score = 43.1 bits (102), Expect = 7e-05
 Identities = 14/88 (15%), Positives = 29/88 (32%), Gaps = 20/88 (22%)

Query: 123 KNLLAAVD-VQCKLVDFGNACWTHKQFTNDIQ--------TRQYRCPEVLLGSK------ 167
           KN+    D  +  + DFG    +        +           +  PE++          
Sbjct: 159 KNVF--YDNGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSPDTEED 216

Query: 168 ---YSTSADLWSFACICFELATGDVLFD 192
              +S  +D+++   I +EL   +  F 
Sbjct: 217 KLPFSKHSDVFALGTIWYELHAREWPFK 244

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens} Length = 353

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-------TRQYRCPEVLLGSKYSTSADLWS 176
           N+L   +  CKL DFG  C   K+   +         T  Y  PE+L    Y  + D W+
Sbjct: 154 NVLLDHEGHCKLADFG-MC---KEGICNGVTTATFCGTPDYIAPEILQEMLYGPAVDWWA 209

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
              + +E+  G   F         ++ED L
Sbjct: 210 MGVLLYEMLCGHAPF-------EAENEDDL 232

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A* Length = 348

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 36/177 (20%), Positives = 55/177 (31%), Gaps = 56/177 (31%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK---YSTSADLWSFACI 180
           N+L +     KL DFG+A       +  + T  +  PEV+L      Y    D+WS    
Sbjct: 184 NILLSEPGLVKLGDFGSASIMAPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 242

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA---LGGRYSRDFFNRHGDL 237
           C ELA       P    N           M  L  + +  +     G +S  F       
Sbjct: 243 CIELAERK---PPLFNMN----------AMSALYHIAQNESPALQSGHWSEYF------- 282

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                                         +F+   L  +P+ RPT+   L H ++ 
Sbjct: 283 -----------------------------RNFVDSCLQKIPQDRPTSEVLLKHRFVL 310

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A* Length = 345

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQF-TNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N+L   D   K+ DFG  C   K+    D +T        Y  PE+LLG KY+ S D WS
Sbjct: 148 NILLDKDGHIKIADFG-MC---KENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWS 203

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
           F  + +E+  G   F       + +DE+ L
Sbjct: 204 FGVLLYEMLIGQSPF-------HGQDEEEL 226

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A Length = 674

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N++   +   K+ DFG  C   K+   + + T+       Y  PE++    Y  S D W+
Sbjct: 472 NVMLDSEGHIKIADFG-MC---KENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA 527

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
           F  + +E+  G   F         +DED L
Sbjct: 528 FGVLLYEMLAGQAPF-------EGEDEDEL 550

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens} Length = 336

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 22/114 (19%), Positives = 36/114 (31%), Gaps = 22/114 (19%)

Query: 107 TSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ--------- 153
           T      H +P+ + R    +N+L   D  C + DFG +                     
Sbjct: 129 TELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISE 188

Query: 154 --TRQYRCPEVLLGS-------KYSTSADLWSFACICFELATGDVLFDPHSGDN 198
             T +Y  PEVL G+             D+++   I +E+        P     
Sbjct: 189 VGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVP 242

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ... Length = 350

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTR----QYRCPEVLLGSKYSTSADLWSFAC 179
           NLL       ++ DFG A    K+      T     +   PE++L   Y+ + D W+   
Sbjct: 171 NLLIDQQGYIQVTDFGFA----KRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGV 226

Query: 180 ICFELATG 187
           + +E+A G
Sbjct: 227 LIYEMAAG 234

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A* Length = 446

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 12/87 (13%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ----TRQYRCPEVLLGSKYSTSADLWSFAC 179
           NL+   D   K+ DFG  C    +    ++    T +Y  PEVL  + Y  + D W    
Sbjct: 279 NLMLDKDGHIKITDFG-LCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGV 337

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHL 206
           + +E+  G + F       Y++D + L
Sbjct: 338 VMYEMMCGRLPF-------YNQDHEKL 357

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A* Length = 353

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N++   +   K+ DFG  C   K+   + + T+       Y  PE++    Y  S D W+
Sbjct: 151 NVMLDSEGHIKIADFG-MC---KENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKSVDWWA 206

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
           F  + +E+  G   F         +DED L
Sbjct: 207 FGVLLYEMLAGQAPF-------EGEDEDEL 229

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ... Length = 337

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           NL+   D   K+ DFG  C   K+  ++    +      +Y  PEVL  + Y  + D W 
Sbjct: 135 NLMLDKDGHIKITDFG-LC---KEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWG 190

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
              + +E+  G + F       Y++D + L
Sbjct: 191 LGVVMYEMMCGRLPF-------YNQDHERL 213

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis} Length = 309

 Score = 40.3 bits (95), Expect = 6e-04
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 7/79 (8%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           N+L + D    LVDFG A  T      Q  N + T  Y  PE    S  +  AD+++  C
Sbjct: 164 NILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHATYRADIYALTC 223

Query: 180 ICFELATGDVLFDPHSGDN 198
           + +E  TG     P+ GD 
Sbjct: 224 VLYECLTGSP---PYQGDQ 239

>3g51_A Ribosomal protein S6 kinase alpha-3; N-terminal kinase domain of P90 ribosomal S6 kinase 2, ATP- binding, nucleotide-binding, phosphoprotein; HET: ANP; 1.80A {Mus musculus} PDB: 2z7q_A* 2z7r_A* 2z7s_A* Length = 325

 Score = 39.8 bits (94), Expect = 8e-04
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 18/90 (20%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQ-FTNDIQTR------QYRCPEVLLGSKYSTSADLWS 176
           N+L   +   KL DFG +    K+   ++ +        +Y  PEV+    ++ SAD WS
Sbjct: 156 NILLDEEGHIKLTDFGLS----KESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQSADWWS 211

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHL 206
           F  + FE+ TG + F         KD    
Sbjct: 212 FGVLMFEMLTGTLPF-------QGKDRKET 234

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	358
4fih_A	346	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
4aw0_A	311	HPDK1, 3-phosphoinositide-dependent protein kinase	100.0
4b9d_A	350	Serine/threonine-protein kinase NEK1; transferase,	100.0
4fie_A	423	Serine/threonine-protein kinase PAK 4; kinase doma	100.0
3fpq_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
3ubd_A	304	Ribosomal protein S6 kinase alpha-3; kinase-inhibi	100.0
4b99_A	398	Mitogen-activated protein kinase 7; transferase, i	100.0
3hyh_A	275	Carbon catabolite-derepressing protein kinase; kin	100.0
4g3f_A	336	NF-kappa-beta-inducing kinase; non-RD kinase, prot	100.0
4f9c_A	361	Cell division cycle 7-related protein kinase; Ser/	100.0
4g31_A	299	Eukaryotic translation initiation factor 2-alpha;	100.0
3omv_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
3v5w_A	689	G-protein coupled receptor kinase 2; inhibitor com	100.0
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	100.0
4ase_A	353	Vascular endothelial growth factor receptor 2; tra	100.0
4gt4_A	308	Tyrosine-protein kinase transmembrane receptor RO;	100.0
4asz_A	299	BDNF/NT-3 growth factors receptor; transferase, TR	100.0
4aoj_A	329	High affinity nerve growth factor receptor; transf	100.0
3ttj_A	464	Mitogen-activated protein kinase 10; JNK3, protein	100.0
1wak_A	397	Serine/threonine-protein kinase SPRK1; SRPK, trans	100.0
1q8y_A	373	SR protein kinase; transferase; HET: ADP ADE; 2.05	100.0
1cm8_A	367	Phosphorylated MAP kinase P38-gamma; phosphorylati	100.0
3fe3_A	328	MAP/microtubule affinity-regulating kinase 3; seri	100.0
3rp9_A	458	Mitogen-activated protein kinase; structural genom	100.0
3hmm_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	100.0
3zgw_A	347	Maternal embryonic leucine zipper kinase; transfer	100.0
3oz6_A	388	Mitogen-activated protein kinase 1, serine/threon	100.0
3n9x_A	432	Phosphotransferase; malaria kinase, structural gen	100.0
2fst_X	367	Mitogen-activated protein kinase 14; active mutant	100.0
3niz_A	311	Rhodanese family protein; structural genomics, str	100.0
2yab_A	361	Death-associated protein kinase 2; apoptosis, tran	100.0
1fot_A	318	TPK1 delta, CAMP-dependent protein kinase type 1;	100.0
4dc2_A	396	Protein kinase C IOTA type; kinase, substrate, cel	100.0
1o6l_A	337	RAC-beta serine/threonine protein kinase; protein	100.0
3txo_A	353	PKC-L, NPKC-ETA, protein kinase C ETA type; phosph	100.0
3g33_A	308	Cell division protein kinase 4; Ser/Thr protein ki	100.0
3kvw_A	429	DYRK2, dual specificity tyrosine-phosphorylation-r	100.0
3o0g_A	292	Cell division protein kinase 5; kinase activator c	100.0
3a8x_A	345	Protein kinase C IOTA type; transferase; HET: TPO;	100.0
3fxz_A	297	Serine/threonine-protein kinase PAK 1; transferase	100.0
1rdq_E	350	PKA C-alpha, CAMP-dependent protein kinase, alpha-	100.0
2pmi_A	317	Negative RE, cyclin-dependent protein kinase PHO85	100.0
1xjd_A	345	Protein kinase C, theta type; PKC-theta, ATP, AMP,	100.0
2vx3_A	382	Dual specificity tyrosine-phosphorylation- regula	100.0
2i0e_A	353	Protein kinase C-beta II; serine/threonine protein	100.0
3rgf_A	405	Cyclin-dependent kinase 8; protein kinase complex,	100.0
2y0a_A	326	Death-associated protein kinase 1; transferase, ca	100.0
3soa_A	444	Calcium/calmodulin-dependent protein kinase type a	100.0
3llt_A	360	Serine/threonine kinase-1, pflammer; lammer kinase	100.0
2xrw_A	371	Mitogen-activated protein kinase 8; transcription,	100.0
1ob3_A	288	PFPK5, cell division control protein 2 homolog; tr	100.0
2bdw_A	362	Hypothetical protein K11E8.1D; kinase, calmodulin	100.0
3mtl_A	324	Cell division protein kinase 16; pctaire1, indirub	100.0
4exu_A	371	Mitogen-activated protein kinase 13; P38 kinase, t	100.0
3qyz_A	364	Mitogen-activated protein kinase 1; transferase, s	100.0
3gbz_A	329	Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-	100.0
3mi9_A	351	Cell division protein kinase 9; P-TEFB, HIV-1, pro	100.0
2r5t_A	373	Serine/threonine-protein kinase SGK1; AGC protein	100.0
3h4j_B	336	AMPK kdaid, SNF1-like protein kinase SSP2; ATP-bin	100.0
3tki_A	323	Serine/threonine-protein kinase CHK1; cell checkpo	100.0
3a62_A	327	Ribosomal protein S6 kinase beta-1; kinase domain,	100.0
1tki_A	321	Titin; serine kinase, muscle, autoinhibition; 2.00	100.0
1z57_A	339	Dual specificity protein kinase CLK1; protein tyro	100.0
4ejn_A	446	RAC-alpha serine/threonine-protein kinase; AKT1, a	100.0
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	100.0
3e3p_A	360	Protein kinase, putative glycogen synthase kinase;	100.0
1nxk_A	400	MAP kinase-activated protein kinase 2; MK2, phosph	100.0
3coi_A	353	Mitogen-activated protein kinase 13; P38D, P38delt	100.0
3pg1_A	362	Mitogen-activated protein kinase, putative (MAP K	100.0
4fr4_A	384	YANK1, serine/threonine-protein kinase 32A; struct	100.0
3v8s_A	410	RHO-associated protein kinase 1; dimerization, myo	100.0
3kn6_A	325	Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1	100.0
4agu_A	311	Cyclin-dependent kinase-like 1; transferase, phosp	100.0
1ua2_A	346	CAK, cell division protein kinase 7; cell cycle, p	100.0
4aw2_A	437	Serine/threonine-protein kinase MRCK alpha; transf	100.0
3gni_B	389	Strad alpha; kinase fold, pseudokinase, alpha heli	100.0
2eu9_A	355	Dual specificity protein kinase CLK3; kinase domai	100.0
2y94_A	476	5'-AMP-activated protein kinase catalytic subunit;	100.0
2b9h_A	353	MAP kinase FUS3, mitogen-activated protein kinase	100.0
1kob_A	387	Twitchin; kinase, intrasteric regulation; 2.30A {A	100.0
2x4f_A	373	Myosin light chain kinase family member 4; LUNG, b	100.0
3lm5_A	327	Serine/threonine-protein kinase 17B; STK17B, serin	100.0
2w4o_A	349	Calcium/calmodulin-dependent protein kinase type I	100.0
3c0i_A	351	Peripheral plasma membrane protein CASK; neurexin,	100.0
3uc3_A	361	Serine/threonine-protein kinase SRK2I; SNRK2, ABA	100.0
2c30_A	321	Serine/threonine-protein kinase PAK 6; CRIB domain	100.0
3qd2_B	332	Eukaryotic translation initiation factor 2-alpha;	100.0
3nsz_A	330	CK II alpha, casein kinase II subunit alpha; inhib	100.0
2a2a_A	321	Death-associated protein kinase 2; autoinhibition,	100.0
2vd5_A	412	DMPK protein; serine/threonine-protein kinase, kin	100.0
3eb0_A	383	Putative uncharacterized protein; kinase cryptospo	100.0
2acx_A	576	G protein-coupled receptor kinase 6; GRK, G transf	100.0
2zv2_A	298	Calcium/calmodulin-dependent protein kinase kinas;	100.0
2ac3_A	316	MAP kinase-interacting serine/threonine kinase 2;	100.0
2zmd_A	390	Dual specificity protein kinase TTK; MPS1, T686A,	100.0
2qr7_A	342	Ribosomal protein S6 kinase alpha-3; kinase domain	100.0
4e7w_A	394	Glycogen synthase kinase 3; GSK3, PTyr195, transfe	100.0
3c4z_A	543	Rhodopsin kinase; Ser/Thr kinase, RGS homology dom	100.0
2y7j_A	365	Phosphorylase B kinase gamma catalytic chain, test	100.0
3kk8_A	284	Calcium/calmodulin dependent protein kinase II; AT	100.0
2eue_A	275	Carbon catabolite derepressing protein kinase; kin	100.0
3eqc_A	360	Dual specificity mitogen-activated protein kinase;	100.0
3byv_A	377	Rhoptry kinase; malaria, transferase, structural g	100.0
3nyv_A	484	Calmodulin-domain protein kinase 1; serine/threoni	100.0
3q60_A	371	ROP5B; pseudokinase, transferase; HET: ATP; 1.72A	100.0
3dbq_A	343	Dual specificity protein kinase TTK; MPS1 structur	100.0
3i6u_A	419	CDS1, serine/threonine-protein kinase CHK2; Ser/Th	100.0
4euu_A	319	Serine/threonine-protein kinase TBK1; ATP binding,	100.0
3fdn_A	279	Serine/threonine-protein kinase 6; aurora kinase i	100.0
4aaa_A	331	Cyclin-dependent kinase-like 2; transferase, phosp	100.0
3is5_A	285	Calcium-dependent protein kinase; CDPK, structural	100.0
2r3i_A	299	Cell division protein kinase 2; serine/threonine-p	100.0
1t4h_A	290	Serine/threonine-protein kinase WNK1; protein seri	100.0
1j1b_A	420	Glycogen synthase kinase-3 beta; complex, TAU, AMP	100.0
3lij_A	494	Calcium/calmodulin dependent protein kinase with A	100.0
1blx_A	326	Cyclin-dependent kinase 6; inhibitor protein, cycl	100.0
3f3z_A	277	Calcium/calmodulin-dependent protein kinase with d	100.0
3hko_A	345	Calcium/calmodulin-dependent protein kinase with d	100.0
3mwu_A	486	Calmodulin-domain protein kinase 1; serine/threoni	100.0
2yex_A	276	Serine/threonine-protein kinase CHK1; transferase,	100.0
3dls_A	335	PAS domain-containing serine/threonine-protein KI;	100.0
3q5i_A	504	Protein kinase; CDPK, malaria, phosphotransferase,	100.0
2vgo_A	284	Serine/threonine-protein kinase 12-A; nucleotide-b	100.0
1vzo_A	355	Ribosomal protein S6 kinase alpha 5; protein kinas	100.0
3ork_A	311	Serine/threonine protein kinase; structural genomi	100.0
3p1a_A	311	MYT1 kinase, membrane-associated tyrosine- and thr	100.0
3cok_A	278	Serine/threonine-protein kinase PLK4; POLO-like ki	100.0
2owb_A	335	Serine/threonine-protein kinase PLK1; catalytic do	100.0
3vhe_A	359	Vascular endothelial growth factor receptor 2; kin	100.0
2jam_A	304	Calcium/calmodulin-dependent protein kinase type 1	100.0
1phk_A	298	Phosphorylase kinase; glycogen metabolism, transfe	100.0
3p86_A	309	Serine/threonine-protein kinase CTR1; ETR1, ERS1,	100.0
2rku_A	294	Serine/threonine-protein kinase PLK1; structure of	100.0
3bhy_A	283	Death-associated protein kinase 3; death associate	100.0
1u5q_A	348	Serine/threonine protein kinase TAO2; transferase;	100.0
2x7f_A	326	TRAF2 and NCK-interacting protein kinase; serine/t	100.0
1x8b_A	289	WEE1HU, WEE1-like protein kinase; cell cycle, tran	100.0
2ycf_A	322	Serine/threonine-protein kinase CHK2; transferase,	100.0
2pml_X	348	PFPK7, Ser/Thr protein kinase; phosphorylati trans	100.0
3fme_A	290	Dual specificity mitogen-activated protein kinase;	100.0
2vwi_A	303	Serine/threonine-protein kinase OSR1; STE kinase,	100.0
2psq_A	370	Fibroblast growth factor receptor 2; kinase domain	100.0
2h6d_A	276	5'-AMP-activated protein kinase catalytic subunit	100.0
3a7i_A	303	MST3 kinase, serine/threonine kinase 24 (STE20 hom	100.0
3com_A	314	Serine/threonine-protein kinase 4; MST1, STE20-lik	100.0
3kul_A	325	Ephrin type-A receptor 8; ATP-binding, kinase, nuc	100.0
3an0_A	340	Dual specificity mitogen-activated protein kinase;	100.0
2i6l_A	320	Mitogen-activated protein kinase 6; MAPK6, ERK3, e	100.0
3lb7_A	307	RAF proto-oncogene serine/threonine-protein kinas;	100.0
2clq_A	295	Mitogen-activated protein kinase kinase kinase 5;	100.0
3fhr_A	336	MAP kinase-activated protein kinase 3; kinase-inhi	100.0
2j7t_A	302	Serine/threonine-protein kinase 10; transferase, A	100.0
3a99_A	320	Proto-oncogene serine/threonine-protein kinase PI;	100.0
2wtk_C	305	Serine/threonine-protein kinase 11; transferase-me	100.0
2w5a_A	279	Serine/threonine-protein kinase NEK2; Ser/Thr prot	100.0
2xir_A	316	Vascular endothelial growth factor receptor 2; ang	100.0
3tt0_A	382	Basic fibroblast growth factor receptor 1; kinase	100.0
3l9p_A	367	Anaplastic lymphoma kinase; kinase domain, ATP-bin	100.0
3cek_A	313	Dual specificity protein kinase TTK; HMPS1, PYT, E	99.98
1zy4_A	303	Serine/threonine-protein kinase GCN2; translation	99.98
2iwi_A	312	Serine/threonine-protein kinase PIM-2; nucleotide-	99.98
2qkw_B	321	Protein kinase; three-helix bundle motif, AVRPTO-P	99.98
4eqm_A	294	Protein kinase; transferase; HET: ANP; 3.00A {Stap	99.98
2rio_A	434	Serine/threonine-protein kinase/endoribonuclease I	99.98
2qol_A	373	Ephrin receptor; receptor tyrosine kinase, juxtame	99.98
3qa8_A	676	MGC80376 protein; kinase ubiquitin-like domain, ph	99.98
3qup_A	323	Tyrosine-protein kinase receptor TYRO3; protein ki	99.98
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.98
1mp8_A	281	Focal adhesion kinase 1; tyrosine protein kinase,	99.98
2eva_A	307	TAK1 kinase - TAB1 chimera fusion protein; transfe	99.98
3s95_A	310	LIMK-1, LIM domain kinase 1; structural genomics,	99.98
1luf_A	343	Muscle-specific tyrosine kinase receptor MUSK; pho	99.97
3cbl_A	377	C-FES, proto-oncogene tyrosine-protein kinase FES/	99.97
3uim_A	326	Brassinosteroid insensitive 1-associated receptor;	99.97
2ivs_A	314	Proto-oncogene tyrosine-protein kinase receptor RE	99.97
4eut_A	396	Serine/threonine-protein kinase TBK1; ATP binding,	99.97
3soc_A	322	Activin receptor type-2A; structural genomics cons	99.97
2wei_A	287	Calmodulin-domain protein kinase 1, putative; nucl	99.97
1rjb_A	344	FL cytokine receptor; kinase, structure, autoinhib	99.97
3q4u_A	301	Activin receptor type-1; structural genomics conso	99.97
1t46_A	313	HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcom	99.97
4hcu_A	269	Tyrosine-protein kinase ITK/TSK; transferase-trans	99.97
3c1x_A	373	Hepatocyte growth factor receptor; receptor tyrosi	99.97
1u59_A	287	Tyrosine-protein kinase ZAP-70; transferase; HET:	99.97
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.97
4f0f_A	287	Serine/threonine-protein kinase ROCO4; LRRK2, ATP-	99.97
2pvf_A	334	Fibroblast growth factor receptor 2; kinase domain	99.97
1p4o_A	322	Insulin-like growth factor I receptor protein; IGF	99.97
3p23_A	432	Serine/threonine-protein kinase/endoribonuclease;	99.97
3kex_A	325	Receptor tyrosine-protein kinase ERBB-3; kinase do	99.97
3gen_A	283	Tyrosine-protein kinase BTK; bruton'S tyrosine kin	99.97
3cc6_A	281	Protein tyrosine kinase 2 beta; focal adhesion kin	99.97
3aln_A	327	Dual specificity mitogen-activated protein kinase;	99.97
1byg_A	278	CSK, protein (C-terminal SRC kinase); protein kina	99.97
2ozo_A	613	Tyrosine-protein kinase ZAP-70; inactive ZAP-70, t	99.97
3g2f_A	336	Bone morphogenetic protein receptor type-2; kinase	99.97
2izr_A	330	Casein kinase I isoform gamma-3; serine/threonine-	99.97
2dyl_A	318	Dual specificity mitogen-activated protein kinase	99.97
3poz_A	327	Epidermal growth factor receptor; kinase domain, a	99.97
3f66_A	298	Hepatocyte growth factor receptor; C-Met, protein	99.97
3og7_A	289	AKAP9-BRAF fusion protein; proto-oncogene, V600E,	99.97
1mqb_A	333	Ephrin type-A receptor 2; tyrosine protein kinase,	99.97
3sxs_A	268	Cytoplasmic tyrosine-protein kinase BMX; transfera	99.97
3mdy_A	337	Bone morphogenetic protein receptor type-1B; compl	99.97
2v62_A	345	Serine/threonine-protein kinase VRK2; transferase,	99.97
3ugc_A	295	Tyrosine-protein kinase JAK2; small molecule inhib	99.97
2yfx_A	327	Tyrosine-protein kinase receptor; nucleotide-bindi	99.97
3pls_A	298	Macrophage-stimulating protein receptor; protein k	99.97
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.97
4hgt_A	296	Casein kinase I isoform delta; CK1D, inhibitor, tr	99.97
3kmu_A	271	ILK, integrin-linked kinase; cell adhesion, ANK re	99.97
3uzp_A	296	CKI-delta, CKID, casein kinase I isoform delta; CK	99.97
1csn_A	298	Casein kinase-1; phosphotransferase; HET: ATP; 2.0	99.97
3lxp_A	318	Non-receptor tyrosine-protein kinase TYK2; JAK3, i	99.97
4e5w_A	302	Tyrosine-protein kinase JAK1; kinase domain, trans	99.97
4fl3_A	635	Tyrosine-protein kinase SYK; transferase; HET: ANP	99.97
3gxj_A	303	TGF-beta receptor type-1; ALK5, kinase, inhibitor,	99.97
1xbb_A	291	Tyrosine-protein kinase SYK; gleevec, STI-571, ima	99.97
2i1m_A	333	Macrophage colony-stimulating factor 1 receptor; k	99.97
3dzo_A	413	Rhoptry kinase domain; parasitic disease, transfer	99.97
3lxl_A	327	Tyrosine-protein kinase JAK3; TYK2, inflammation,	99.97
3lzb_A	327	Epidermal growth factor receptor; epidermal growth	99.97
3brb_A	313	Proto-oncogene tyrosine-protein kinase MER; ATP-bi	99.97
1qpc_A	279	LCK kinase; alpha beta fold, transferase; HET: PTR	99.97
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.97
1fvr_A	327	Tyrosine-protein kinase TIE-2; tyrosine kinase, tr	99.97
4fvq_A	289	Tyrosine-protein kinase JAK2; janus protein kinase	99.97
3t9t_A	267	Tyrosine-protein kinase ITK/TSK; kinase domain, al	99.97
3dtc_A	271	Mitogen-activated protein kinase kinase kinase 9;	99.97
3e7e_A	365	HBUB1, BUB1A, mitotic checkpoint serine/threonine-	99.97
2jii_A	352	Serine/threonine-protein kinase VRK3 molecule: VA	99.97
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.97
2j0j_A	656	Focal adhesion kinase 1; cell migration, FERM, tra	99.97
2a19_B	284	Interferon-induced, double-stranded RNA-activated	99.97
2h34_A	309	Serine/threonine-protein kinase PKNE; apoenzyme, t	99.97
3op5_A	364	Serine/threonine-protein kinase VRK1; adenosine tr	99.97
2nru_A	307	Interleukin-1 receptor-associated kinase 4; inhibi	99.97
1b6c_B	342	TGF-B superfamily receptor type I; complex (isomer	99.97
3kfa_A	288	Tyrosine-protein kinase ABL1; CML, drug resistance	99.97
3sv0_A	483	Casein kinase I-like; typical kinase domain fold,	99.96
2wqm_A	310	Serine/threonine-protein kinase NEK7; ATP-binding,	99.96
1u46_A	291	ACK-1, activated CDC42 kinase 1; tyrosine kinase,	99.96
3m2w_A	299	MAP kinase-activated protein kinase 2; small molec	99.96
3ll6_A	337	Cyclin G-associated kinase; transferase, protein k	99.96
2w1i_A	326	JAK2; chromosomal rearrangement, nucleotide-bindin	99.96
2vuw_A	336	Serine/threonine-protein kinase haspin; cell cycle	99.96
2buj_A	317	Serine/threonine-protein kinase 16; transferase, A	99.96
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.96
2y4i_B	319	KSR2, HKSR2, kinase suppressor of RAS 2; transfera	99.96
3uqc_A	286	Probable conserved transmembrane protein; structur	99.93
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.92
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	99.7
1zar_A	282	RIO2 kinase; serine kinase, winged-helix, RIO doma	99.48
1zth_A	258	RIO1 serine protein kinase; ribosome biogenesis, r	98.9
4gyi_A	397	RIO2 kinase; protein kinase, ADP complex, phosphoa	98.53
3tm0_A	263	Aminoglycoside 3'-phosphotransferase; protein kina	97.45
3dxp_A	359	Putative acyl-COA dehydrogenase; protein kinase-li	97.2
3sg8_A	304	APH(2'')-ID; antibiotic resistance enzyme, transfe	97.19
1nd4_A	264	Aminoglycoside 3'-phosphotransferase; protein kina	97.15
2yle_A	229	Protein spire homolog 1; actin-binding protein, ac	96.4
3r70_A	320	Aminoglycoside phosphotransferase; structural geno	93.78
3ovc_A	362	Hygromycin-B 4-O-kinase; aminoglycoside phosphotra	92.84
3tdw_A	306	Gentamicin resistance protein; kinase, phosphoryl	91.07
3ats_A	357	Putative uncharacterized protein; hypothetical pro	86.85

>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*

Probab=100.00  E-value=1.8e-48  Score=355.65  Aligned_cols=229  Identities=17%  Similarity=0.213  Sum_probs=187.7

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+|..||+|.+... ....+..+.+|.+...+  +.|++|+.+++.... ...+|||||||+||+|.+++.. ..+++.
T Consensus        96 ~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~--l~HpnIV~l~~~~~~-~~~~~ivmEy~~gg~L~~~l~~-~~l~e~  170 (346)
T 4fih_A           96 RSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD--YQHENVVEMYNSYLV-GDELWVVMEFLEGGALTDIVTH-TRMNEE  170 (346)
T ss_dssp             TTTCCEEEEEEEEGG-GCSSGGGGHHHHHHHHH--CCCTTBCCEEEEEEE-TTEEEEEECCCTTEEHHHHHHH-SCCCHH
T ss_pred             CCCCCEEEEEEEecC-chhHHHHHHHHHHHHHh--CCCCCCCcEEEEEEE-CCEEEEEEeCCCCCcHHHHHHc-CCCCHH
Confidence            346888999998643 33455677888887776  468899988876654 4579999999999999998865 458999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +++.++.|++.|+.|+|+.+|+||    +||||+.+|.+||+|||+|+....   ..++.+||+.|||||++.+..|+.+
T Consensus       171 ~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~  250 (346)
T 4fih_A          171 QIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPE  250 (346)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccccCCHHHEEECCCCCEEEecCcCceecCCCCCcccccccCcCcCCHHHHCCCCCCcH
Confidence            999999999999999999999999    999999999999999999987643   3456799999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|++||.+.+      ..+.+..+.....  +                                  
T Consensus       251 ~DiWSlGvilyeml~G~~PF~~~~------~~~~~~~i~~~~~--~----------------------------------  288 (346)
T 4fih_A          251 VDIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRDNLP--P----------------------------------  288 (346)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHSSC--C----------------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHcCCC--C----------------------------------
Confidence            999999999999999999997544      3444443332110  0                                  


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                         ....+..+++++.+||.+||+.||++|||++|+|+||||+...
T Consensus       289 ---~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~Hp~~~~~~  331 (346)
T 4fih_A          289 ---RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKAG  331 (346)
T ss_dssp             ---CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGCC
T ss_pred             ---CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhcCCC
Confidence               1122344578999999999999999999999999999998653

>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...

Probab=100.00  E-value=5.6e-49  Score=353.82  Aligned_cols=228  Identities=18%  Similarity=0.204  Sum_probs=190.7

Q ss_pred             cccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..+|+|++....  ..+..+++.+|.+...+  +.|++|+.+++.... ...+|||||||+||+|.+++.....++
T Consensus        54 ~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~-~~~~yivmEy~~gG~L~~~i~~~~~l~  130 (311)
T 4aw0_A           54 LATSREYAIKILEKRHIIKENKVPYVTRERDVMSR--LDHPFFVKLYFTFQD-DEKLYFGLSYAKNGELLKYIRKIGSFD  130 (311)
T ss_dssp             TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHHHSSCC
T ss_pred             CCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEEe-CCEEEEEEecCCCCCHHHHHHHcCCCC
Confidence            3567889999997643  33455678888887776  468899988877654 457899999999999999999888999


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +.+++.++.|++.|+.|+|+.+|+||    +|||++.++.+||+|||+|+....     ...+.+||+.|||||++.+..
T Consensus       131 e~~~~~~~~qi~~al~ylH~~~IiHRDlKPeNILl~~~g~vKl~DFGla~~~~~~~~~~~~~~~~GTp~YmAPEvl~~~~  210 (311)
T 4aw0_A          131 ETCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKS  210 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTTTCCCBCCCCSCGGGCCHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEEcCCCCEEEEEcCCceecCCCCCcccccCcccCcccCCHHHHcCCC
Confidence            99999999999999999999999999    999999999999999999987542     245669999999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      |+.++||||+||++|+|++|++||.+.+      ....+..+.                                     
T Consensus       211 y~~~~DiWSlGvilyeml~G~~PF~~~~------~~~~~~~i~-------------------------------------  247 (311)
T 4aw0_A          211 ACKSSDLWALGCIIYQLVAGLPPFRAGN------EGLIFAKII-------------------------------------  247 (311)
T ss_dssp             BCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH-------------------------------------
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHH-------------------------------------
Confidence            9999999999999999999999997644      333333332                                     


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHH------HhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ------CLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~e------lL~hpwf~~~~  297 (358)
                           ...+.++..+++++.+||.+||+.||++|||++|      +++||||++-.
T Consensus       248 -----~~~~~~p~~~s~~~~dli~~lL~~dp~~R~t~~e~~~~~~i~~Hp~F~~id  298 (311)
T 4aw0_A          248 -----KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESVT  298 (311)
T ss_dssp             -----HTCCCCCTTCCHHHHHHHHHHSCSSGGGSTTSGGGTCHHHHHTSGGGTTCC
T ss_pred             -----cCCCCCCcccCHHHHHHHHHHccCCHhHCcChHHHcCCHHHHCCCCcCCCC
Confidence                 1233455566889999999999999999999988      58999998743

>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*

Probab=100.00  E-value=3e-48  Score=354.64  Aligned_cols=228  Identities=18%  Similarity=0.250  Sum_probs=188.7

Q ss_pred             cccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--cccc
Q 045353           19 TESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~   95 (358)
                      ..+|..||+|++.. .++...+.++++|++...++  .|++|+.+++.... ...+|||||||+||+|.+++..  ...+
T Consensus        46 ~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l--~HpnIV~~~~~~~~-~~~~yiVmEy~~gg~L~~~i~~~~~~~~  122 (350)
T 4b9d_A           46 TEDGRQYVIKEINISRMSSKEREESRREVAVLANM--KHPNIVQYRESFEE-NGSLYIVMDYCEGGDLFKRINAQKGVLF  122 (350)
T ss_dssp             TTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEEE-TTEEEEEEECCTTCBHHHHHHHTTTCCC
T ss_pred             CCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHC--CCCCCCcEEEEEEE-CCEEEEEEeCCCCCcHHHHHHHcCCCCC
Confidence            35688999999865 45566778888888888774  68899988877653 5679999999999999999864  3456


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++.+++.++.|++.|+.|+|+.+|+||    +||||+.+|.+||+|||+|+.....   .++.+||+.|||||++.+..|
T Consensus       123 ~e~~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~l~~~~y  202 (350)
T 4b9d_A          123 QEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQLGDFGIARVLNSTVELARACIGTPYYLSPEICENKPY  202 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCEETTCCGGGEEECTTCCEEECSTTEESCCCHHHHHHHHHHSCCTTCCHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeeeccCCHHHEEECCCCCEEEcccccceeecCCcccccccCCCccccCHHHHCCCCC
Confidence            888999999999999999999999999    9999999999999999999876532   345689999999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|++||.+.+      ..+.+..+..  +..|                               
T Consensus       203 ~~~~DiwSlGvilyemltG~~PF~~~~------~~~~~~~i~~--~~~~-------------------------------  243 (350)
T 4b9d_A          203 NNKSDIWALGCVLYELCTLKHAFEAGS------MKNLVLKIIS--GSFP-------------------------------  243 (350)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH--TCCC-------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHc--CCCC-------------------------------
Confidence            999999999999999999999997654      3333333321  1111                               


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ..+..+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       244 --------~~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~~  283 (350)
T 4b9d_A          244 --------PVSLHYSYDLRSLVSQLFKRNPRDRPSVNSILEKGFIAKR  283 (350)
T ss_dssp             --------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHTT
T ss_pred             --------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCHHhhcC
Confidence                    1233457889999999999999999999999999999753

>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}

Probab=100.00  E-value=1.2e-47  Score=358.51  Aligned_cols=228  Identities=18%  Similarity=0.218  Sum_probs=187.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+|..||+|.+... ....+..+.+|.+....  +.|++|+.+++.... ...+|||||||+||+|.+++.. ..+.+.
T Consensus       173 ~~tg~~vAiK~i~~~-~~~~~~~~~~Ei~il~~--l~HpnIV~l~~~~~~-~~~~~iVmEy~~gG~L~~~i~~-~~l~e~  247 (423)
T 4fie_A          173 RSSGKLVAVKKMDLR-KQQRRELLFNEVVIMRD--YQHENVVEMYNSYLV-GDELWVVMEFLEGGALTDIVTH-TRMNEE  247 (423)
T ss_dssp             TTTCCEEEEEEEEST-TCSSGGGHHHHHHHHHH--CCCTTBCCEEEEEEE-TTEEEEEEECCTTEEHHHHHHH-SCCCHH
T ss_pred             CCCCCEEEEEEEecc-chhHHHHHHHHHHHHHh--CCCCCCCceEEEEEE-CCEEEEEEeCCCCCcHHHHHhc-cCCCHH
Confidence            356888999998643 34455677888887776  468899988877654 4579999999999999998864 458899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +++.++.|++.|+.|+|+.+|+||    +||||+.+|.+||+|||+|+....   ..++.+||+.|||||++.+..|+.+
T Consensus       248 ~~~~~~~qil~aL~ylH~~~IiHRDiKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GTp~YmAPEvl~~~~y~~~  327 (423)
T 4fie_A          248 QIAAVCLAVLQALSVLHAQGVIHRDIKSDSILLTHDGRVKLSDFGFCAQVSKEVPRRKSLVGTPYWMAPELISRLPYGPE  327 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSTTTEEECTTCCEEECCCTTCEECCSSCCCBCCCEECTTTCCHHHHTTCCBCTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEecCccceECCCCCccccccccCcCcCCHHHHCCCCCCcH
Confidence            999999999999999999999999    999999999999999999987643   3456799999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|++||.+.+      ....+..+....   +.                                 
T Consensus       328 ~DiWSlGvilyeml~G~~PF~~~~------~~~~~~~i~~~~---~~---------------------------------  365 (423)
T 4fie_A          328 VDIWSLGIMVIEMVDGEPPYFNEP------PLKAMKMIRDNL---PP---------------------------------  365 (423)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHSC---CC---------------------------------
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHcCC---CC---------------------------------
Confidence            999999999999999999997544      344443332211   10                                 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         ....+..+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       366 ---~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~ell~Hp~~~~~  407 (423)
T 4fie_A          366 ---RLKNLHKVSPSLKGFLDRLLVRDPAQRATAAELLKHPFLAKA  407 (423)
T ss_dssp             ---CCSCTTSSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             ---CCcccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHHhcCC
Confidence               011233457899999999999999999999999999999864

>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}

Probab=100.00  E-value=1.1e-47  Score=343.54  Aligned_cols=228  Identities=15%  Similarity=0.180  Sum_probs=183.6

Q ss_pred             cccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC---CCCCCCcccccCCCCCcccccccccc
Q 045353           19 TESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP---SSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        19 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      ..+|..||+|.+.. ..+...+.+++++++...++  .|++|+.+.+....   ....+|||||||+||+|.+++.....
T Consensus        48 ~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l--~HpnIV~~~~~~~~~~~~~~~~~lvmEy~~gg~L~~~l~~~~~  125 (290)
T 3fpq_A           48 TETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL--QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKV  125 (290)
T ss_dssp             TTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTC--CCTTBCCEEEEEEEEETTEEEEEEEEECCCSCBHHHHHHHHSS
T ss_pred             CCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhC--CCCCCCcEEEEEeeccCCCcEEEEEEeCCCCCCHHHHHHhcCC
Confidence            35677899998864 45667778888988888774  68899998876432   34568999999999999999998888


Q ss_pred             cChhhhhHHHHhhhhccccccCCC--CCCc----ccccccC-CCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAV-DVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~-~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +++..+..++.|++.|+.|+|+.+  |+||    +|||+++ ++.+||+|||+|+..... ..+.+||+.|||||++.+ 
T Consensus       126 l~~~~~~~~~~qi~~aL~ylH~~~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~~~~~~~~~~~~GTp~YmAPE~~~~-  204 (290)
T 3fpq_A          126 MKIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-  204 (290)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTSSSCCCCCCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCEEecccChhheeEECCCCCEEEEeCcCCEeCCCCccCCcccCccccCHHHcCC-
Confidence            999999999999999999999988  9999    9999985 799999999999765433 445689999999999875 


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhC-CCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .|+.++|||||||++|+|++|++||.+..      ....+...  +.. ..|.                           
T Consensus       205 ~y~~~~DiwSlGvilyelltg~~Pf~~~~------~~~~~~~~--i~~~~~~~---------------------------  249 (290)
T 3fpq_A          205 KYDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYRR--VTSGVKPA---------------------------  249 (290)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHHH--HTTTCCCG---------------------------
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCCCCCC------cHHHHHHH--HHcCCCCC---------------------------
Confidence            69999999999999999999999996543      22222111  111 1110                           


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                 .++...++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       250 -----------~~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~Hp~~~~  288 (290)
T 3fpq_A          250 -----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQE  288 (290)
T ss_dssp             -----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC-
T ss_pred             -----------CCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccC
Confidence                       122334678999999999999999999999999999985

>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*

Probab=100.00  E-value=3.5e-48  Score=348.49  Aligned_cols=226  Identities=17%  Similarity=0.197  Sum_probs=182.3

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .++..+|+|++.... ....+.++.++++...+  +.|++|+.+.+.... ...+|||||||+||+|.+++.....+++.
T Consensus        50 ~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~-~~~~~ivmEy~~gg~L~~~l~~~~~l~e~  126 (304)
T 3ubd_A           50 DARQLYAMKVLKKATLKVRDRVRTKMERDILVE--VNHPFIVKLHYAFQT-EGKLYLILDFLRGGDLFTRLSKEVMFTEE  126 (304)
T ss_dssp             TTTCEEEEEEEESEEEEEEECC------CCCCC--CCCTTEECEEEEEEE-TTEEEEEECCCTTCEEHHHHHHHCCCCHH
T ss_pred             CCCEEEEEEEEehHHcChHHHHHHHHHHHHHHH--CCCCCCCeEEEEEEE-CCEEEEEEEcCCCCCHHHHHHhcCCCCHH
Confidence            456789999997643 34445566666555554  578899998876654 46789999999999999999988889999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +++.++.|++.|+.|+|+.+|+||    +|||++.+|.+||+|||+|+...   ....+.+||+.|||||++.+..|+.+
T Consensus       127 ~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~vKl~DFGla~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~  206 (304)
T 3ubd_A          127 DVKFYLAELALALDHLHSLGIIYRDLKPENILLDEEGHIKLTDFGLSKESIDHEKKAYSFCGTVEYMAPEVVNRRGHTQS  206 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTSCEEEESSEEEEC-----CCCCSCCCCGGGCCHHHHHTSCCCTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcCCCCCHHHeEEcCCCCEEecccccceeccCCCccccccccCcccCCHHHhccCCCCCC
Confidence            999999999999999999999999    99999999999999999997643   23456799999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|++||.+.+      ..+.+..+.+                                        
T Consensus       207 ~DiwSlGvilyemltG~~PF~~~~------~~~~~~~i~~----------------------------------------  240 (304)
T 3ubd_A          207 ADWWSFGVLMFEMLTGTLPFQGKD------RKETMTMILK----------------------------------------  240 (304)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH----------------------------------------
T ss_pred             CcccchHHHHHHHHhCCCCCCCcC------HHHHHHHHHc----------------------------------------
Confidence            999999999999999999997654      3333333321                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                        ..+.++..+++++.+||.+||+.||++|||     ++|+++||||++-
T Consensus       241 --~~~~~p~~~s~~~~~li~~~L~~dP~~R~ta~~~~~~eil~Hp~f~~i  288 (304)
T 3ubd_A          241 --AKLGMPQFLSPEAQSLLRMLFKRNPANRLGAGPDGVEEIKRHSFFSTI  288 (304)
T ss_dssp             --CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSTTTHHHHHTSGGGTTC
T ss_pred             --CCCCCCCcCCHHHHHHHHHHcccCHHHCCCCCcCCHHHHHcCccccCC
Confidence              122345556889999999999999999998     5899999999863

>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.9e-46  Score=347.80  Aligned_cols=258  Identities=20%  Similarity=0.231  Sum_probs=201.9

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..||+|.+.... .....+++.|+.+....+  .|++|+.+.+....     ....+|||||||+ |+|.+++...
T Consensus        76 ~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l--~HpnIv~l~~~~~~~~~~~~~~~~~ivmE~~~-g~L~~~i~~~  152 (398)
T 4b99_A           76 RLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHF--KHDNIIAIKDILRPTVPYGEFKSVYVVLDLME-SDLHQIIHSS  152 (398)
T ss_dssp             TTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHC--CCTTBCCEEEECCCSSCTTTCCCEEEEEECCS-EEHHHHHTSS
T ss_pred             CCCCCEEEEEEECccccchHHHHHHHHHHHHHHhc--CCCCcceEeeeeecccccccCCEEEEEEeCCC-CCHHHHHHhc
Confidence            3578899999987644 345567788888877764  68888888775433     3467899999996 6799999888


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-------CCCCCCccCCCcchhH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-------KQFTNDIQTRQYRCPE  161 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-------~~~~~~~gt~~Y~aPE  161 (358)
                      ..+++.+++.++.|++.|+.|+|+.+|+||    +|||++.++.+||+|||+|+...       ...++.+||++|||||
T Consensus       153 ~~l~~~~~~~~~~qil~al~ylH~~~iiHRDlKP~NIl~~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~Y~APE  232 (398)
T 4b99_A          153 QPLTLEHVRYFLYQLLRGLKYMHSAQVIHRDLKPSNLLVNENCELKIGDFGMARGLCTSPAEHQYFMTEYVATRWYRAPE  232 (398)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCC-------CCCCCSSCCCCTTCCHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCcCcCCCcCccccccCCCCCEEEeecceeeecccCccccccccccceeChHhcCHH
Confidence            899999999999999999999999999999    99999999999999999997642       2245679999999999


Q ss_pred             HHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh--hhhccCCch
Q 045353          162 VLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD--FFNRHGDLR  238 (358)
Q Consensus       162 ~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~~~~~~  238 (358)
                      ++.+.. |+.++||||+||++|+|++|++||.+.+      ..+++..|....|.++...+........  +....... 
T Consensus       233 v~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~------~~~~l~~I~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~-  305 (398)
T 4b99_A          233 LMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKN------YVHQLQLIMMVLGTPSPAVIQAVGAERVRAYIQSLPPR-  305 (398)
T ss_dssp             HHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSS------HHHHHHHHHHHHCCCCGGGTC-----CHHHHHHSSCCC-
T ss_pred             HhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCC------HHHHHHHHHHhcCCCChHHhhhhhhhhhhhhhhcCCCc-
Confidence            999865 6999999999999999999999998766      7899999999999988765433221110  00000000 


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                           ...+.       ....+..++++.+||.+||++||++||||+|+|+||||+....
T Consensus       306 -----~~~~~-------~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~~~  353 (398)
T 4b99_A          306 -----QPVPW-------ETVYPGADRQALSLLGRMLRFEPSARISAAAALRHPFLAKYHD  353 (398)
T ss_dssp             -----CCCCH-------HHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGTTTCC
T ss_pred             -----CCCCH-------HHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhcCHhhCcCCC
Confidence                 00000       0112345788999999999999999999999999999997543

>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A

Probab=100.00  E-value=4.2e-47  Score=336.97  Aligned_cols=225  Identities=16%  Similarity=0.180  Sum_probs=175.9

Q ss_pred             cccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..+|+|++......  +...++.+|.+....+  .|++++.+.+.... ...+|+||||| +|+|.+++.....++
T Consensus        35 ~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l--~HpnIv~~~~~~~~-~~~~~ivmEy~-~g~L~~~l~~~~~l~  110 (275)
T 3hyh_A           35 TTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLL--RHPHIIKLYDVIKS-KDEIIMVIEYA-GNELFDYIVQRDKMS  110 (275)
T ss_dssp             TTTCCEEEEEEEECC------CHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEEECC-CEEHHHHHHHSCSCC
T ss_pred             CCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHC--CCCCCCeEEEEEEE-CCEEEEEEeCC-CCCHHHHHHHcCCCC
Confidence            356889999999765433  3456778888777764  68899988877654 46789999999 689999998888899


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKY-S  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~-~  169 (358)
                      +.+++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....  ...+.+||+.|||||++.+..| +
T Consensus       111 e~~~~~~~~qi~~al~ylH~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~~GT~~Y~APE~~~~~~y~~  190 (275)
T 3hyh_A          111 EQEARRFFQQIISAVEYCHRHKIVHRDLKPENLLLDEHLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVISGKLYAG  190 (275)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTCCEEECCSSCC---------------CTTSCHHHHSSSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccccCChHHeEECCCCCEEEeecCCCeecCCCCccCCeeECcccCChhhhcCCCCCC
Confidence            99999999999999999999999999    999999999999999999976543  3456799999999999999886 6


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|++||.+.+      .......+.                                       
T Consensus       191 ~~~DiwSlGvily~lltg~~PF~~~~------~~~~~~~i~---------------------------------------  225 (275)
T 3hyh_A          191 PEVDVWSCGVILYVMLCRRLPFDDES------IPVLFKNIS---------------------------------------  225 (275)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH---------------------------------------
T ss_pred             ChhhhHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHH---------------------------------------
Confidence            89999999999999999999997543      222222221                                       


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                         ...+.++..+++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       226 ---~~~~~~p~~~s~~~~~li~~~L~~dP~~R~s~~eil~hpw~k~  268 (275)
T 3hyh_A          226 ---NGVYTLPKFLSPGAAGLIKRMLIVNPLNRISIHEIMQDDWFKV  268 (275)
T ss_dssp             ---HTCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHCHHHHT
T ss_pred             ---cCCCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHcCccccc
Confidence               1122344556789999999999999999999999999999975

>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*

Probab=100.00  E-value=6.9e-46  Score=337.55  Aligned_cols=224  Identities=16%  Similarity=0.117  Sum_probs=178.0

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+|..||+|.+....      ...++++...+  +.|++|+.++..... ...+|||||||+||+|.+++.....+++.
T Consensus        80 ~~~g~~vAiK~i~~~~------~~~~E~~il~~--l~HpnIV~l~~~~~~-~~~~~ivmEy~~gg~L~~~l~~~~~l~e~  150 (336)
T 4g3f_A           80 KQTGFQCAVKKVRLEV------FRVEELVACAG--LSSPRIVPLYGAVRE-GPWVNIFMELLEGGSLGQLIKQMGCLPED  150 (336)
T ss_dssp             TTTCCEEEEEEEETTT------CCTHHHHTTTT--CCCTTBCCEEEEEEE-TTEEEEEECCCTTCBHHHHHHHHSSCCHH
T ss_pred             CCCCCEEEEEEECHHH------hHHHHHHHHHh--CCCCCCCcEEEEEEE-CCEEEEEEeccCCCcHHHHHHHcCCCCHH
Confidence            3568899999986432      12345554444  478899998876543 46789999999999999999988889999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCCC--------CCCCccCCCcchhHHHhC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHKQ--------FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~~--------~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++..++.|++.|+.|+|+.+|+||    +||||+.+| .+||+|||+|+.....        ....+||+.|||||++.+
T Consensus       151 ~~~~~~~qi~~aL~ylH~~~IiHRDlKp~NILl~~~g~~vKl~DFGla~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~  230 (336)
T 4g3f_A          151 RALYYLGQALEGLEYLHTRRILHGDVKADNVLLSSDGSRAALCDFGHALCLQPDGLGKSLLTGDYIPGTETHMAPEVVMG  230 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEECTTSCCEEECCCTTCEEC------------CCCCCCGGGCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHCCceecccCHHHEEEeCCCCEEEEeeCCCCeEccCCCcccceecCCccccCccccCHHHHCC
Confidence            999999999999999999999999    999999997 6999999999875421        223589999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..|+.++|||||||++|+|++|++||.+.+...      .+..+.   ...++                           
T Consensus       231 ~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~------~~~~i~---~~~~~---------------------------  274 (336)
T 4g3f_A          231 KPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP------LCLKIA---SEPPP---------------------------  274 (336)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC------CHHHHH---HSCCG---------------------------
T ss_pred             CCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH------HHHHHH---cCCCC---------------------------
Confidence            999999999999999999999999997654322      111111   11110                           


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHH-------------hcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC-------------LSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~el-------------L~hpwf~~~  296 (358)
                               ...+++.+++.+.+||.+||+.||.+|||+.|+             |+|||+..-
T Consensus       275 ---------~~~~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~~l~hPw~~~~  329 (336)
T 4g3f_A          275 ---------IREIPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVGGLKSPWKGEY  329 (336)
T ss_dssp             ---------GGGSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTTSSCSCSSSSC
T ss_pred             ---------chhcCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhhhccCCCcCCC
Confidence                     112455668899999999999999999999997             679999864

>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*

Probab=100.00  E-value=1.5e-45  Score=340.78  Aligned_cols=263  Identities=21%  Similarity=0.184  Sum_probs=186.6

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++..||+|.+...   +...++.++.+..... .+|++++.+.+.... ...+|+|||||+||+|.+++..   +++.++
T Consensus        48 ~~~~vAiK~i~~~---~~~~~~~~E~~~l~~~-~~h~nIv~l~~~~~~-~~~~~lvmE~~~g~~L~~~~~~---l~~~~~  119 (361)
T 4f9c_A           48 PEEKIALKHLIPT---SHPIRIAAELQCLTVA-GGQDNVMGVKYCFRK-NDHVVIAMPYLEHESFLDILNS---LSFQEV  119 (361)
T ss_dssp             CEEEEEEEEECTT---SCHHHHHHHHHHHHHT-CSBTTBCCCSEEEEE-TTEEEEEEECCCCCCHHHHHTT---CCHHHH
T ss_pred             CCCEEEEEEEccc---cCHHHHHHHHHHHHHh-cCCCCCceEEEEEEE-CCEEEEEEeCCCcccHHHHHcC---CCHHHH
Confidence            4667899987653   3345666776665554 367788887765543 4678999999999999999854   788999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecCC-----------------------------
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTHK-----------------------------  146 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~~-----------------------------  146 (358)
                      +.++.|++.|+.|+|+.||+||    +|||++.+ +.+||+|||+|+....                             
T Consensus       120 ~~~~~qll~al~ylH~~gIiHRDiKPeNiLl~~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (361)
T 4f9c_A          120 REYMLNLFKALKRIHQFGIVHRDVKPSNFLYNRRLKKYALVDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSR  199 (361)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECTTCSCGGGGGC--------------------
T ss_pred             HHHHHHHHHHHHHHHHCCeEeCcCCHHHeEEeCCCCeEEECcCCCCcccCCccccccccccccccccccccccccccccc
Confidence            9999999999999999999999    99999877 8999999999975432                             


Q ss_pred             --CCCCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcC
Q 045353          147 --QFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG  223 (358)
Q Consensus       147 --~~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  223 (358)
                        ..++.+||++|||||++.+.. |+.++||||+||++|+|++|++||.+.+     .+.+++..|..++|.++......
T Consensus       200 ~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~ell~G~~Pf~~~~-----~~~~~l~~I~~~~G~~~~~~~~~  274 (361)
T 4f9c_A          200 RQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLSLLSGRYPFYKAS-----DDLTALAQIMTIRGSRETIQAAK  274 (361)
T ss_dssp             ------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             cccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHHHHHCCCCCCCCC-----CHHHHHHHHHHhcCCccchhhhh
Confidence              123458999999999999875 8999999999999999999999996544     27889999999999754432211


Q ss_pred             CCCChhhhhcc---CCchhhh----hcc-----CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          224 GRYSRDFFNRH---GDLRHIR----RLR-----FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       224 ~~~~~~~~~~~---~~~~~~~----~~~-----~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                      ...........   .......    ...     ..................++++.|||.+||++||++|+||+|+|+||
T Consensus       275 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~is~~a~DLl~~lL~~dP~~R~ta~eaL~Hp  354 (361)
T 4f9c_A          275 TFGKSILCSKEVPAQDLRKLCERLRGMDSSTPKLTSDIQGHATNLEGWNEVPDEAYDLLDKLLDLNPASRITAEEALLHP  354 (361)
T ss_dssp             HTTEEEEESSCCCCCCHHHHHHHHC----------------------CTTCCHHHHHHHHHHTCSCTTTSCCHHHHHTSG
T ss_pred             hccccccccccCcchhhhHHHHhhccccccccccccccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCc
Confidence            00000000000   0000000    000     00000000011123345678999999999999999999999999999


Q ss_pred             CcCCC
Q 045353          292 WMSAG  296 (358)
Q Consensus       292 wf~~~  296 (358)
                      ||++-
T Consensus       355 ~f~~i  359 (361)
T 4f9c_A          355 FFKDM  359 (361)
T ss_dssp             GGTTC
T ss_pred             ccCCC
Confidence            99863

>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*

Probab=100.00  E-value=1.7e-44  Score=325.28  Aligned_cols=225  Identities=16%  Similarity=0.166  Sum_probs=171.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----------CCCCCCcccccCCCCCcccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----------SSPDNFSVDTIPNGVSVEER   88 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~iv~e~~~gg~L~~~   88 (358)
                      .+|..+|+|.+...-.+..++++.+|.+...++  .|++|+..++....           ....+|||||||+||+|.++
T Consensus        28 ~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l--~HpnIV~~~~~~~~~~~~~~~~~~~~~~~l~ivmE~~~gg~L~~~  105 (299)
T 4g31_A           28 VDDCNYAIKRIRLPNRELAREKVMREVKALAKL--EHPGIVRYFNAWLEKNTTEKLQPSSPKVYLYIQMQLCRKENLKDW  105 (299)
T ss_dssp             TTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEEEEC----------CEEEEEEEECCCSCCHHHH
T ss_pred             CCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhC--CCCCCCeEEEEEEecCccccccccCCCcEEEEEEecCCCCcHHHH
Confidence            467889999987666667778888888888774  68888888765432           22347999999999999999


Q ss_pred             cccccccCh---hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------------
Q 045353           89 QNDSVVNNE---SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------------  147 (358)
Q Consensus        89 ~~~~~~~~~---~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------------  147 (358)
                      +.......+   ..+..++.|++.|+.|+|+.+|+||    +|||++.++.+||+|||+|+.....              
T Consensus       106 l~~~~~~~~~~~~~~~~i~~qi~~al~ylH~~~IiHRDlKp~NILl~~~~~vKl~DFGla~~~~~~~~~~~~~~~~~~~~  185 (299)
T 4g31_A          106 MNGRCTIEERERSVCLHIFLQIAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYA  185 (299)
T ss_dssp             HHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCCCC--------------------
T ss_pred             HHhcCCCChhHHHHHHHHHHHHHHHHHHHHHCcCccccCcHHHeEECCCCcEEEccCccceecCCCcccccccccccccc
Confidence            986654433   4578899999999999999999999    9999999999999999999765321              


Q ss_pred             -CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCC-CchhhhcCCC
Q 045353          148 -FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGM-MPRKIALGGR  225 (358)
Q Consensus       148 -~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~-~p~~~~~~~~  225 (358)
                       .++.+||+.|||||++.+..|+.++|||||||++|+|++   ||.+        ..+....+..+... .|+       
T Consensus       186 ~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~--------~~~~~~~~~~~~~~~~p~-------  247 (299)
T 4g31_A          186 RHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFST--------QMERVRTLTDVRNLKFPP-------  247 (299)
T ss_dssp             ------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSS--------HHHHHHHHHHHHTTCCCH-------
T ss_pred             ccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCC--------ccHHHHHHHHHhcCCCCC-------
Confidence             234589999999999999999999999999999999996   6742        22333333332211 111       


Q ss_pred             CChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                                      .....++.+.+||.+||+.||++|||+.|+|+||||++-
T Consensus       248 --------------------------------~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~h~~~~~~  286 (299)
T 4g31_A          248 --------------------------------LFTQKYPCEYVMVQDMLSPSPMERPEAINIIENAVFEDL  286 (299)
T ss_dssp             --------------------------------HHHHHCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGCCC
T ss_pred             --------------------------------CCcccCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCCC
Confidence                                            011224567899999999999999999999999999864

>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}

Probab=100.00  E-value=6.2e-43  Score=315.03  Aligned_cols=220  Identities=19%  Similarity=0.181  Sum_probs=171.4

Q ss_pred             ccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhh
Q 045353           24 SKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRD  101 (358)
Q Consensus        24 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~  101 (358)
                      .||+|++.. ..+....+.++++++...+  +.|++++.+.....  .+.+|||||||+||+|.+++.. ...+++.++.
T Consensus        60 ~vAvK~~~~~~~~~~~~~~f~~E~~il~~--l~HpNIV~l~g~~~--~~~~~iVmEy~~gGsL~~~l~~~~~~l~~~~~~  135 (307)
T 3omv_A           60 DVAVKILKVVDPTPEQFQAFRNEVAVLRK--TRHVNILLFMGYMT--KDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLI  135 (307)
T ss_dssp             EEEEEECCCSSCCHHHHHHHHHHHHHHTT--CCCTTBCCEEEEEC--SSSCEEEEECCSSCBHHHHHHTSCCCCCHHHHH
T ss_pred             cEEEEEEEecCCCHHHHHHHHHHHHHHHh--CCCCCEeeEEEEEE--CCeEEEEEEcCCCCCHHHHHhhcCCCCCHHHHH
Confidence            588998864 4556667888888888877  46888988876543  3568999999999999998864 4568999999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCC---CCC
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGS---KYS  169 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~---~~~  169 (358)
                      .++.|++.|+.|+|+.+|+||    +||||++++.+||+|||+|+....     .....+||+.|||||++.+.   +|+
T Consensus       136 ~i~~qia~gL~yLH~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~GT~~ymAPE~l~~~~~~~y~  215 (307)
T 3omv_A          136 DIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATVKSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFS  215 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCBCSCCCSSSEEEETTEEEEECCCSSCBC------------CCCCTTSCCHHHHHCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCccCCccCHHHEEECCCCcEEEeeccCceecccCCcceeecccccCCCccCHHHhhccCCCCCC
Confidence            999999999999999999999    999999999999999999976532     23456899999999999753   589


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|||++|+.||.+.+      ....+..+...--..|.                               
T Consensus       216 ~ksDVwS~Gvvl~Elltg~~Pf~~~~------~~~~~~~~~~~~~~~p~-------------------------------  258 (307)
T 3omv_A          216 FQSDVYSYGIVLYELMTGELPYSHIN------NRDQIIFMVGRGYASPD-------------------------------  258 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHTTCCCCC-------------------------------
T ss_pred             cHHHhHhHHHHHHHHHHCCCCCCCCC------hHHHHHHHHhcCCCCCC-------------------------------
Confidence            99999999999999999999997544      23333222211111110                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+..+++.+.+||.+||+.||++|||+.|+++
T Consensus       259 -----~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~  293 (307)
T 3omv_A          259 -----LSKLYKNCPKAMKRLVADCVKKVKEERPLFPQILS  293 (307)
T ss_dssp             -----STTSCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHH
T ss_pred             -----cccccccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                 01233456788999999999999999999998754

>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A

Probab=100.00  E-value=3.8e-43  Score=342.64  Aligned_cols=231  Identities=17%  Similarity=0.185  Sum_probs=181.5

Q ss_pred             cccCcccccccccCccchh-hh-HHhhHHHHHhhh-hccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           19 TESSASKENKSLYGDLTKN-QK-KKVKKKAKKAAQ-GCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      ..+|..+|+|++....... +. ....+++..... ....|++|+.+...... ...+|+|||||+||+|.+++.....+
T Consensus       211 ~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~-~~~lylVmEy~~GGdL~~~l~~~~~l  289 (689)
T 3v5w_A          211 ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKLSFILDLMNGGDLHYHLSQHGVF  289 (689)
T ss_dssp             TTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHCCC
T ss_pred             CCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE-CCEEEEEEecCCCCcHHHHHHhcCCC
Confidence            3568889999997643322 21 222222222221 12467888888777654 45799999999999999999988899


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhC-CCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLG-SKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~-~~~~  169 (358)
                      ++..++.++.|++.|+.|+|+.+|+||    +||||+.+|++||+|||+|+.... ...+.|||+.|||||++.+ ..|+
T Consensus       290 ~E~~a~~y~~qIl~aL~yLH~~gIiHRDLKPeNILld~~G~vKL~DFGlA~~~~~~~~~t~~GTp~YmAPEvl~~~~~y~  369 (689)
T 3v5w_A          290 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYD  369 (689)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCCCCSCCSCGGGCCHHHHSTTCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCccccCCchHHeEEeCCCCEEecccceeeecCCCCCCCccCCcCccCHHHHhCCCCCC
Confidence            999999999999999999999999999    999999999999999999987653 3556799999999999975 5799


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|.+||.+.+...    ...+  +.                                       
T Consensus       370 ~~vDiWSLGvilYEmLtG~~PF~~~~~~~----~~~i--~~---------------------------------------  404 (689)
T 3v5w_A          370 SSADWFSLGCMLFKLLRGHSPFRQHKTKD----KHEI--DR---------------------------------------  404 (689)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTCGGGCCC----HHHH--HH---------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCChHH----HHHH--HH---------------------------------------
Confidence            99999999999999999999997544211    1111  11                                       


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~  295 (358)
                      .+......++..+++++.+||.+||+.||.+|++     ++||++||||++
T Consensus       405 ~i~~~~~~~p~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~HpfF~~  455 (689)
T 3v5w_A          405 MTLTMAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRS  455 (689)
T ss_dssp             HHHHCCCCCCTTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTTSGGGTT
T ss_pred             hhcCCCCCCCccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhcCccccC
Confidence            1111223455667899999999999999999998     799999999986

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=100.00  E-value=9.3e-43  Score=340.61  Aligned_cols=233  Identities=18%  Similarity=0.241  Sum_probs=188.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+|+|.+.... ...+..++++.+....  +.|++++.+.+.... ...+|||||||+||+|.+++.. ...+++.
T Consensus       180 ~tg~~~AiK~i~~~~-~~~~~~~~~Ei~il~~--l~hpnIv~l~~~~~~-~~~~~iv~E~~~gg~L~~~i~~~~~~l~e~  255 (573)
T 3uto_A          180 ATGNNFAAKFVMTPH-ESDKETVRKEIQTMSV--LRHPTLVNLHDAFED-DNEMVMIYEFMSGGELFEKVADEHNKMSED  255 (573)
T ss_dssp             TTCCEEEEEEEECCS-HHHHHHHHHHHHHHHH--TCCTTBCCEEEEEEC-SSEEEEEEECCCCCBHHHHHTCTTSCEEHH
T ss_pred             CCCCEEEEEEEeccc-hhhHHHHHHHHHHHHh--CCCCCCCeEEEEEEE-CCEEEEEEeecCCCcHHHHHHHhCCCCCHH
Confidence            567889999886543 3445677788777766  468888888776543 5678999999999999998864 4578999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCC--CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD--VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~--~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +++.++.|++.|+.|+|+.+++||    +|||++.+  +.+||+|||+|+.....  ....+||+.|||||++.+..|+.
T Consensus       256 ~~~~~~~qi~~al~ylH~~~iiHRDlKp~Nill~~~~~~~vKl~DFG~a~~~~~~~~~~~~~GT~~y~APEv~~~~~y~~  335 (573)
T 3uto_A          256 EAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGY  335 (573)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCSSCEECCTTSEEEEECSSGGGCCHHHHTTCCBCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeeccCChhhccccCCCCCCEEEeeccceeEccCCCceeeeEECccccCHHHhCCCCCCc
Confidence            999999999999999999999999    99999865  89999999999876533  44568999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|.+||.+.+      ..+.+..+...-..++.                                
T Consensus       336 ~~DiWSlGvilyeml~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------  377 (573)
T 3uto_A          336 YTDMWSVGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDD--------------------------------  377 (573)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCS--------------------------------
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCcC------HHHHHHHHHhCCCCCCc--------------------------------
Confidence            9999999999999999999997654      44444444322111111                                


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                            ..+..+++++.+||.+||++||.+|||+.|+|+||||+....+.
T Consensus       378 ------~~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~Hpw~~~~~~~~  421 (573)
T 3uto_A          378 ------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPG  421 (573)
T ss_dssp             ------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTSCCCCTT
T ss_pred             ------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcCcCCCCCCC
Confidence                  11234578899999999999999999999999999999765433

>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*

Probab=100.00  E-value=7e-43  Score=321.17  Aligned_cols=221  Identities=15%  Similarity=0.142  Sum_probs=181.7

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----------   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----------   92 (358)
                      ..||+|.+.........+.+.++.+...++. ++++|+.+..........+|||||||+||+|.+++...          
T Consensus        95 k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~-hhpnIV~l~g~~~~~~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~  173 (353)
T 4ase_A           95 RTVAVKMLKEGATHSEHRALMSELKILIHIG-HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVA  173 (353)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHHTGGGBCCC---
T ss_pred             eEEEEEEEccccChHHHHHHHHHHHHHHHcC-CCCcEEEEEEEEEecCCEEEEEEEcCCCCCHHHHHHhccccccccccc
Confidence            4689999999888888888999988888763 55788888877666667789999999999999998642          


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..+++.++..++.|++.|+.|+|+.+++||    +|||+++++.+||+|||+|+.....     .+..+||+.|
T Consensus       174 ~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~~~~~~~~~gt~~y  253 (353)
T 4ase_A          174 PEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKW  253 (353)
T ss_dssp             ----CTTCBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEECGGG
T ss_pred             chhhccccCCHHHHHHHHHHHHHHHHhHhhCCeecCccCccceeeCCCCCEEECcchhhhhcccCCCceeeccccccccc
Confidence                  346788999999999999999999999999    9999999999999999999865432     2345789999


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      ||||++.+..|+.++|||||||++|||+| |..||.+.+.     .......+..  |.                     
T Consensus       254 mAPE~l~~~~y~~ksDVwS~Gv~l~El~t~G~~Pf~~~~~-----~~~~~~~i~~--g~---------------------  305 (353)
T 4ase_A          254 MAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEEFCRRLKE--GT---------------------  305 (353)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-----SHHHHHHHHH--TC---------------------
T ss_pred             cCHHHHhcCCCCCcccEeehHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHHc--CC---------------------
Confidence            99999999999999999999999999998 9999976442     2222222211  10                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                        ....+..+++++.+||.+||+.||++|||+.|+++|
T Consensus       306 ------------------~~~~p~~~~~~~~~li~~c~~~dP~~RPt~~eil~~  341 (353)
T 4ase_A          306 ------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  341 (353)
T ss_dssp             ------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------CCCCCccCCHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                              112345567889999999999999999999999987

>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A

Probab=100.00  E-value=1.1e-42  Score=314.42  Aligned_cols=221  Identities=13%  Similarity=0.128  Sum_probs=179.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      +++..||+|.+........++.++++++...+  +.|++++.+...... ...+|||||||+||+|.+++...       
T Consensus        54 ~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~--l~HpNIV~l~g~~~~-~~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~  130 (308)
T 4gt4_A           54 EQTQAVAIKTLKDKAEGPLREEFRHEAMLRAR--LQHPNVVCLLGVVTK-DQPLSMIFSYCSHGDLHEFLVMRSPHSDVG  130 (308)
T ss_dssp             --CEEEEEEECCC-CCC-CHHHHHHHHHHHHH--CCCTTBCCEEEEECS-SSSCEEEEECCSSCBHHHHHHTTCSSCCCC
T ss_pred             CCCeEEEEEEECcccChHHHHHHHHHHHHHHh--CCCCCCCCcceEEEE-CCEEEEEEEcCCCCcHHHHHHhhCcccccc
Confidence            46678999999988888888899999888887  478899998877654 45789999999999999988532       


Q ss_pred             ---------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccC
Q 045353           93 ---------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQT  154 (358)
Q Consensus        93 ---------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt  154 (358)
                               ..+++.++..++.|++.|+.|+|+.+++||    +||||++++.+||+|||+|+....     ..+..+||
T Consensus       131 ~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLK~~NILl~~~~~~Ki~DFGlar~~~~~~~~~~~~~~~gt  210 (308)
T 4gt4_A          131 STDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSHHVVHKDLATRNVLVYDKLNVKISDLGLFREVYAADYYKLLGNSLLP  210 (308)
T ss_dssp             -----CCEECCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCSCCBCGGGGGGCBCSSSSSCBC
T ss_pred             ccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCccccceEECCCCCEEECCcccceeccCCCceeEecccccC
Confidence                     346788899999999999999999999999    999999999999999999976432     23456899


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|||||++.+..|+.++|||||||++|||+| |..||.+.+      ..+.+..+..  +.                  
T Consensus       211 ~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~~------~~~~~~~i~~--~~------------------  264 (308)
T 4gt4_A          211 IRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGYS------NQDVVEMIRN--RQ------------------  264 (308)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTCC------HHHHHHHHHT--TC------------------
T ss_pred             CcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC------------------
Confidence            99999999999999999999999999999998 899997654      3333332221  11                  


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ..+.+..+++.+.+|+.+||+.||++|||+.||+++
T Consensus       265 ---------------------~~~~p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~  300 (308)
T 4gt4_A          265 ---------------------VLPCPDDCPAWVYALMIECWNEFPSRRPRFKDIHSR  300 (308)
T ss_dssp             ---------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                 112345567889999999999999999999999875

>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*

Probab=100.00  E-value=1.6e-42  Score=312.10  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=180.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .+|..||+|.+... +.+.++.+.+|++...++  .|++++.+...... ...+|||||||+||+|.+++...       
T Consensus        41 ~~~~~vAvK~l~~~-~~~~~~~f~~E~~il~~l--~HpnIV~l~g~~~~-~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~  116 (299)
T 4asz_A           41 QDKILVAVKTLKDA-SDNARKDFHREAELLTNL--QHEHIVKFYGVCVE-GDPLIMVFEYMKHGDLNKFLRAHGPDAVLM  116 (299)
T ss_dssp             --CEEEEEEEECSC-CHHHHHHHHHHHHHHTTC--CCTTBCCEEEEECS-SSSEEEEEECCTTCBHHHHHHHTSHHHHHC
T ss_pred             CCCEEEEEEEeCCC-ChHHHHHHHHHHHHHHhC--CCCCCccEEEEEee-CCEEEEEEEcCCCCcHHHHHHhcCcccccc
Confidence            45778999999754 566678889998888774  68899998887654 45789999999999999998643       


Q ss_pred             ------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           93 ------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        93 ------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                            ..+++.++..++.|++.|+.|+|+.+++||    +|||+++++.+||+|||+|+.....     ....+||+.|
T Consensus       117 ~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~~y  196 (299)
T 4asz_A          117 AEGNPPTELTQSQMLHIAQQIAAGMVYLASQHFVHRDLATRNCLVGENLLVKIGDFGMSRDVYSTDYYRVGGHTMLPIRW  196 (299)
T ss_dssp             ----CCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCEEETTTEEECGGG
T ss_pred             cccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccCHhhEEECCCCcEEECCcccceecCCCCceeecCceecChhh
Confidence                  357889999999999999999999999999    9999999999999999999765322     2334789999


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      ||||++.+..|+.++|||||||++|||+| |+.||.+.+      ..+.+..+..  |.                     
T Consensus       197 mAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~~~i~~--~~---------------------  247 (299)
T 4asz_A          197 MPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLS------NNEVIECITQ--GR---------------------  247 (299)
T ss_dssp             CCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHH--TC---------------------
T ss_pred             cCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC---------------------
Confidence            99999999999999999999999999998 899997654      3333333321  11                     


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                        ....|..+++++.+||.+||+.||++|||++|+  |+|++
T Consensus       248 ------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~~i--~~~L~  285 (299)
T 4asz_A          248 ------------------VLQRPRTCPQEVYELMLGCWQREPHMRKNIKGI--HTLLQ  285 (299)
T ss_dssp             ------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHH--HHHHH
T ss_pred             ------------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHH--HHHHH
Confidence                              112345567889999999999999999999999  45664

>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}

Probab=100.00  E-value=4.4e-42  Score=313.35  Aligned_cols=220  Identities=13%  Similarity=0.111  Sum_probs=173.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .+|..||+|.+.. .+.+.++.+.+|++...++  .|++|+.+...... ...+|||||||+||+|.+++...       
T Consensus        69 ~~~~~vAvK~l~~-~~~~~~~~f~~E~~il~~l--~HpnIV~l~g~~~~-~~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~  144 (329)
T 4aoj_A           69 QDKMLVAVKALKE-ASESARQDFQREAELLTML--QHQHIVRFFGVCTE-GRPLLMVFEYMRHGDLNRFLRSHGPDAKLL  144 (329)
T ss_dssp             --CEEEEEEEESC-CSHHHHHHHHHHHHHHTTC--CCTTBCCEEEEECS-SSSEEEEEECCTTCBHHHHHHTSSCC----
T ss_pred             CCCeEEEEEEECc-CCHHHHHHHHHHHHHHHhC--CCCCCCcEEEEEEE-CCEEEEEEEcCCCCcHHHHHHhcCcccccc
Confidence            4577899999975 4566778899998888874  78899998877654 45789999999999999988643       


Q ss_pred             --------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCC
Q 045353           93 --------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTR  155 (358)
Q Consensus        93 --------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~  155 (358)
                              ..+++.++..++.|++.|+.|+|+.+++||    +||||++++.+||+|||+|+.....     .+..+||+
T Consensus       145 ~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~~iiHRDLKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~gt~  224 (329)
T 4aoj_A          145 AGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGLHFVHRDLATRNCLVGQGLVVKIGDFGMSRDIYSTDYYRVGGRTMLPI  224 (329)
T ss_dssp             -------CCSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC----------------CCCCG
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHHHHHHhcCCeecccccHhhEEECCCCcEEEcccccceeccCCCcceecCcccccc
Confidence                    347888999999999999999999999999    9999999999999999999765322     23458999


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      .|||||++.+..|+.++|||||||++|||+| |+.||.+.+      ..+.+..+..  |.                   
T Consensus       225 ~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~------~~~~~~~i~~--g~-------------------  277 (329)
T 4aoj_A          225 RWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLS------NTEAIDCITQ--GR-------------------  277 (329)
T ss_dssp             GGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSC------HHHHHHHHHH--TC-------------------
T ss_pred             cccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCC------HHHHHHHHHc--CC-------------------
Confidence            9999999999999999999999999999998 899997544      3333333321  11                   


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                          ....+..+++++.+||.+||+.||++|||++||+++
T Consensus       278 --------------------~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~  313 (329)
T 4aoj_A          278 --------------------ELERPRACPPEVYAIMRGCWQREPQQRHSIKDVHAR  313 (329)
T ss_dssp             --------------------CCCCCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHH
T ss_pred             --------------------CCCCcccccHHHHHHHHHHcCcChhHCcCHHHHHHH
Confidence                                112345567889999999999999999999999764

>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*

Probab=100.00  E-value=8.4e-40  Score=313.07  Aligned_cols=266  Identities=19%  Similarity=0.247  Sum_probs=190.5

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..||+|.+.... .....+++.++.+....  ..|++++.+.......     ....|+|||||+|+.+. .+.. 
T Consensus        84 ~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~--l~hpnIv~l~~~~~~~~~~~~~~~~~lv~E~~~~~l~~-~~~~-  159 (464)
T 3ttj_A           84 AVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKC--VNHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQ-VIQM-  159 (464)
T ss_dssp             TTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHH--CCCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHH-HHTS-
T ss_pred             CCCCCEEEEEEECccccChHHHHHHHHHHHHHHh--CCCCCCCcEEEEEccCCccccCCeEEEEEeCCCCCHHH-HHhh-
Confidence            3467789999997654 34455677777776665  3677888777664432     24579999999987444 3432 


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~  166 (358)
                       .+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....  .+..+||++|+|||++.+.
T Consensus       160 -~l~~~~~~~~~~qil~aL~~lH~~~iiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~  238 (464)
T 3ttj_A          160 -ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGM  238 (464)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCCC-----CCCC----CCCTTCCHHHHTTC
T ss_pred             -cCCHHHHHHHHHHHHHHHHHHHHCCcccCCCChHhEEEeCCCCEEEEEEEeeeecCCCcccCCCcccccccCHHHHcCC
Confidence             37788999999999999999999999999    9999999999999999999776543  4567899999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh-hccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF-NRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  245 (358)
                      .|+.++|||||||++|+|++|++||.+.+      ..+++..+.+.+|.+++..+.........+ ..............
T Consensus       239 ~~~~~~DiwSlG~il~ell~g~~pF~g~~------~~~~~~~i~~~lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (464)
T 3ttj_A          239 GYKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKL  312 (464)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHcchhhhhHhhcccccCCCChHHh
Confidence            99999999999999999999999998765      788999999999998887665443221111 11111000000000


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .+. .............++++.+||.+||++||++|||++|+|+||||+..
T Consensus       313 ~~~-~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~~~~~  362 (464)
T 3ttj_A          313 FPD-SLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVW  362 (464)
T ss_dssp             SCG-GGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGG
T ss_pred             Ccc-cccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhcChhhhhc
Confidence            000 00000000112236789999999999999999999999999999853

>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*

Probab=100.00  E-value=4.2e-40  Score=308.92  Aligned_cols=275  Identities=38%  Similarity=0.682  Sum_probs=224.9

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhcc------CCCccccccCCCC---CCCCCCCcccccCCCCCccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCA------GTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQ   89 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~   89 (358)
                      ..+|..||+|++...  ......+.++.+....+..      .+++++.+.....   ......|+||||+.|+.+..+.
T Consensus        59 ~~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~  136 (397)
T 1wak_A           59 IQGKKFVAMKVVKSA--EHYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWII  136 (397)
T ss_dssp             TTTTEEEEEEEECSC--HHHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEEETTEEEEEEEECCCCCBHHHHHH
T ss_pred             cCCCeEEEEEEEecC--CcchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeecCCCCceEEEEEeccCccHHHHHH
Confidence            345778999998743  3344556666666555432      1345666555433   2345789999999555554444


Q ss_pred             ccc-cccChhhhhHHHHhhhhccccccCC-CCCCc----ccccccCCC--------------------------------
Q 045353           90 NDS-VVNNESSRDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDV--------------------------------  131 (358)
Q Consensus        90 ~~~-~~~~~~~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~--------------------------------  131 (358)
                      ... ..+++..+..++.|++.|+.|+|+. +++||    +|||++.++                                
T Consensus       137 ~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~givHrDikp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (397)
T 1wak_A          137 KSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRIIHTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPAT  216 (397)
T ss_dssp             HTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECCCCSGGGEEECCCHHHHHHHHHHHC---------------------
T ss_pred             hcccCCCCHHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHeeEeccchhhhhhhhhhHHHhhcCCCCCCCCccccCCcc
Confidence            432 4588899999999999999999998 99999    999999775                                


Q ss_pred             -----------------cEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCC
Q 045353          132 -----------------QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPH  194 (358)
Q Consensus       132 -----------------~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~  194 (358)
                                       .+||+|||+|..........+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~  296 (397)
T 1wak_A          217 AGNFLVNPLEPKNAEKLKVKIADLGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPH  296 (397)
T ss_dssp             CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBCSCSCCSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCC
T ss_pred             cccccccccccccccccceEeccccccccccccCccCCCCCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCC
Confidence                             799999999998887777889999999999999999999999999999999999999999988


Q ss_pred             CCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhcc
Q 045353          195 SGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPIL  274 (358)
Q Consensus       195 ~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  274 (358)
                      +........+++..+.+.+|.+|............++...+.+........+.........+.++...+..+.+||.+||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L  376 (397)
T 1wak_A          297 SGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPML  376 (397)
T ss_dssp             CCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCTTSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGG
T ss_pred             cccccCchHHHHHHHHHhcCCCChHHhhcccccccccCCccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHh
Confidence            77776667889999999999999998888888888888877777766666666666677777888888999999999999


Q ss_pred             ccCCCCCCCHHHHhcCcCcCC
Q 045353          275 DFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       275 ~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ++||++|||++|+|+||||++
T Consensus       377 ~~dP~~Rpt~~e~l~hp~~~~  397 (397)
T 1wak_A          377 ELIPEKRATAAECLRHPWLNS  397 (397)
T ss_dssp             CSSGGGSCCHHHHHTSGGGGC
T ss_pred             ccChhhcCCHHHHhhCccccC
Confidence            999999999999999999973

>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A

Probab=100.00  E-value=2.5e-39  Score=301.42  Aligned_cols=276  Identities=34%  Similarity=0.598  Sum_probs=218.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhcc---------CCCccccccCCCCC---CCCCCCcccccCCCCCccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCA---------GTEAFDESEADSKP---SSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~---~~~~~~iv~e~~~gg~L~~   87 (358)
                      .+|..||+|.+....  .....+.++.+...++..         .+++++.+......   .....++||||+ |++|.+
T Consensus        42 ~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~  118 (373)
T 1q8y_A           42 VNNTHVAMKIVRGDK--VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVL-GENLLA  118 (373)
T ss_dssp             TTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCC-CEEHHH
T ss_pred             CCCcEEEEEEecCCc--cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhhccCCCCceEEEEEecC-CCCHHH
Confidence            567789999987532  233445555544443321         24455555544332   223689999999 999999


Q ss_pred             cccc--ccccChhhhhHHHHhhhhccccccCC-CCCCc----cccccc------CCCcEEEEecCCceecCCCCCCCccC
Q 045353           88 RQND--SVVNNESSRDNEVKNTSQGVKGHRRP-SRATR----KNLLAA------VDVQCKLVDFGNACWTHKQFTNDIQT  154 (358)
Q Consensus        88 ~~~~--~~~~~~~~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~------~~~~vkL~DFG~a~~~~~~~~~~~gt  154 (358)
                      ++..  ...+++..+..++.+++.|+.++|+. +++|+    +|||++      ..+.+||+|||+|..........+||
T Consensus       119 ~~~~~~~~~~~~~~~~~i~~qi~~aL~~lH~~~~ivH~Dikp~NIll~~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~t  198 (373)
T 1q8y_A          119 LIKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQT  198 (373)
T ss_dssp             HHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSC
T ss_pred             HHHHhhccCCcHHHHHHHHHHHHHHHHHHHhcCCEEecCCChHHeEEeccCCCcCcceEEEcccccccccCCCCCCCCCC
Confidence            8864  34478889999999999999999998 99999    999994      44589999999998887777778999


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      +.|+|||++.+..++.++|||||||++|+|++|..||.+..........+.+..+.+.+|.+|..+.........++...
T Consensus       199 ~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  278 (373)
T 1q8y_A          199 REYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSR  278 (373)
T ss_dssp             GGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC-
T ss_pred             ccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCCCcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCc
Confidence            99999999999999999999999999999999999998877666667888999999999999999888888777788877


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      +.+........++........+.++...+..+.+||.+||+.||++|||++|+|+||||+....
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  342 (373)
T 1q8y_A          279 GLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  342 (373)
T ss_dssp             -CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             chhcccccccccchhhhhhhcccCCcchHHHHHHHHHHHhccCccccCCHHHHhhChhhhcccC
Confidence            7777777777777777788888888999999999999999999999999999999999997543

>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.1e-38  Score=294.87  Aligned_cols=256  Identities=22%  Similarity=0.298  Sum_probs=201.3

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..||+|.+.... .....+++.++.+....+  .|++++.+.......     ....|+||||+ |++|.+++.. .
T Consensus        48 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~-~  123 (367)
T 1cm8_A           48 RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM--RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMKH-E  123 (367)
T ss_dssp             TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC--CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHHH-C
T ss_pred             CCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC--CCcCCCCceeeEecCCccccCceEEEEEecC-CCCHHHHHhc-C
Confidence            568889999986654 344556777777777664  577777766554332     24679999999 8899998865 4


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKY  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~  168 (358)
                      .+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+......+..+||++|+|||++.+ ..|
T Consensus       124 ~l~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  203 (367)
T 1cm8_A          124 KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRY  203 (367)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCccccCcCHHHEEEcCCCCEEEEeeecccccccccCcCcCCCCcCCHHHHhCCCCC
Confidence            57888999999999999999999999999    9999999999999999999988777778899999999999998 569


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh--hhhhccCCchhhhhccCC
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR--DFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  246 (358)
                      +.++||||+||++|+|++|++||.+.+      ..+++..+...+|.+|...........  .+.........      .
T Consensus       204 ~~~~DiwslG~il~ell~g~~pf~~~~------~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  271 (367)
T 1cm8_A          204 TQTVDIWSVGCIMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEK------K  271 (367)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHHSCCCCC------C
T ss_pred             ChhhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHHhhhHHHHHHHHhCCCCCC------C
Confidence            999999999999999999999998665      678899999999999887654433211  11111110000      0


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      .       ........++.+.+||.+||++||.+|||++|+|+||||+....
T Consensus       272 ~-------~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~hp~f~~~~~  316 (367)
T 1cm8_A          272 D-------FASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLHD  316 (367)
T ss_dssp             C-------GGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC-
T ss_pred             C-------HHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhcChHHHhhcC
Confidence            0       01122345788999999999999999999999999999997543

>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A

Probab=100.00  E-value=3.1e-39  Score=295.77  Aligned_cols=228  Identities=19%  Similarity=0.246  Sum_probs=186.0

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..||+|.+... ......+++.++.+....+  .|++++.+...... ....|+||||++||+|.+++.....+++.
T Consensus        38 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~l~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~l~~~  114 (328)
T 3fe3_A           38 LTGREVAIKIIDKTQLNPTSLQKLFREVRIMKIL--NHPNIVKLFEVIET-EKTLYLIMEYASGGEVFDYLVAHGRMKEK  114 (328)
T ss_dssp             TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEECCCTTCBHHHHHHHHCCCCHH
T ss_pred             CCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEEE-CCEEEEEEECCCCCcHHHHHHHcCCCCHH
Confidence            57888999998764 3455567777887776664  57778877766543 45789999999999999999887889999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCC-Ccc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKY-STS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~-~~~  171 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|....  ......+||+.|+|||++.+..+ +.+
T Consensus       115 ~~~~~~~qi~~al~~lH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~  194 (328)
T 3fe3_A          115 EARSKFRQIVSAVQYCHQKRIVHRDLKAENLLLDADMNIKIADFGFSNEFTVGGKLDAFCGAPPYAAPELFQGKKYDGPE  194 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTCCGGGSSSCGGGTTSSSGGGCCHHHHHTCCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeccCCCHHHEEEcCCCCEEEeeccCceecCCCCccccccCCcceeCcccccCCCcCCch
Confidence            999999999999999999999999    99999999999999999997543  33556789999999999999886 488


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +||||+||++|+|++|+.||.+.+      .......+.                                         
T Consensus       195 ~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i~-----------------------------------------  227 (328)
T 3fe3_A          195 VDVWSLGVILYTLVSGSLPFDGQN------LKELRERVL-----------------------------------------  227 (328)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH-----------------------------------------
T ss_pred             hhhhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHH-----------------------------------------
Confidence            999999999999999999997543      222222221                                         


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                       ...+..+...++++.+||.+||+.||.+|||++|+|+||||+....
T Consensus       228 -~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~~~  273 (328)
T 3fe3_A          228 -RGKYRIPFYMSTDCENLLKRFLVLNPIKRGTLEQIMKDRWINAGHE  273 (328)
T ss_dssp             -HCCCCCCTTSCHHHHHHHHHHCCSSTTTSCCHHHHTTCTTTTTTCT
T ss_pred             -hCCCCCCCCCCHHHHHHHHHHCCCChhHCcCHHHHhcCHhhcCCCc
Confidence             1122334445788999999999999999999999999999987543

>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}

Probab=100.00  E-value=6.6e-38  Score=299.96  Aligned_cols=263  Identities=21%  Similarity=0.246  Sum_probs=190.9

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCC----CCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP----SSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..||+|.+..... ....+++.++.+....+  .|++++.+......    ....+|+||||+. |+|.+++.....
T Consensus        76 ~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~~~~  152 (458)
T 3rp9_A           76 LEKRVVAIKKILRVFEDLIDCKRILREIAILNRL--NHDHVVKVLDIVIPKDVEKFDELYVVLEIAD-SDFKKLFRTPVY  152 (458)
T ss_dssp             C--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCTTBCCEEEECCCSCTTTCCCEEEEECCCS-EEHHHHHHSSCC
T ss_pred             CCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhC--CCCCCCceEEEEecCCcccCceEEEEEeccc-cchhhhcccCCC
Confidence            4677899998876543 34457777887777664  67888877765532    2357899999985 689998888888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------------------------
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------------------------  146 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------------------------  146 (358)
                      +++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....                        
T Consensus       153 l~~~~~~~~~~qi~~aL~~LH~~~iiHrDlKp~NILl~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (458)
T 3rp9_A          153 LTELHIKTLLYNLLVGVKYVHSAGILHRDLKPANCLVNQDCSVKVCDFGLARTVDYPENGNSQLPISPREDDMNLVTFPH  232 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTCCEEECCCTTCBCTTSCTTCCCCCC---------------
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcCCCCCChhhEEECCCCCEeecccccchhccCccccccccccCccccccccccccc
Confidence            9999999999999999999999999999    999999999999999999976531                        


Q ss_pred             ------CCCCCccCCCcchhHHHh-CCCCCcchhhhhhhHHHHhhhc-----------CCcccCCCCCCCC---------
Q 045353          147 ------QFTNDIQTRQYRCPEVLL-GSKYSTSADLWSFACICFELAT-----------GDVLFDPHSGDNY---------  199 (358)
Q Consensus       147 ------~~~~~~gt~~Y~aPE~l~-~~~~~~~~DiwSlGvil~ell~-----------g~~pf~~~~~~~~---------  199 (358)
                            ..+..+||++|+|||++. +..|+.++|||||||++|+|++           |+++|.+.+....         
T Consensus       233 ~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg~~~~~~~~~~~~p~f~g~~~~~~~~~~~~~~~  312 (458)
T 3rp9_A          233 TKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNMIKENVAYHADRGPLFPGSSCFPLSPDQKAGND  312 (458)
T ss_dssp             ------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTTSTTTCSSGGGCCCSCC----------------
T ss_pred             cccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHhccccccccccccccCCCCcccccccccccccc
Confidence                  234558899999999875 4569999999999999999998           6777765442111         


Q ss_pred             -----CCcHHHHHHHHHHhCCCchhhhcCCCCChh--hhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHh
Q 045353          200 -----DKDEDHLALMMELLGMMPRKIALGGRYSRD--FFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVP  272 (358)
Q Consensus       200 -----~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~  272 (358)
                           ....+++..|..++|.++...+........  +........             ........+..++++.+||.+
T Consensus       313 ~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~s~~~~dLl~~  379 (458)
T 3rp9_A          313 FKFHTRGNRDQLNVIFNILGTPSEEDIEALEKEDAKRYIRIFPKRE-------------GTDLAERFPASSADAIHLLKR  379 (458)
T ss_dssp             ----CHHHHHHHHHHHHHHCCCCHHHHHTSSCHHHHHHHTTSCCCC-------------CCCGGGGSTTSCHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHcCCCCHHHHhhcCCHHHHHHHHhcCCCC-------------CCCHHHHCCCCCHHHHHHHHH
Confidence                 113578899999999998776544322111  000000000             000111223457889999999


Q ss_pred             ccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          273 ILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       273 ~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ||++||++|||++|+|+||||+....
T Consensus       380 mL~~dP~~R~t~~e~L~Hp~f~~~~~  405 (458)
T 3rp9_A          380 MLVFNPNKRITINECLAHPFFKEVRI  405 (458)
T ss_dssp             HSCSSTTTSCCHHHHHHSGGGTTTCC
T ss_pred             HhccCccccCCHHHHhcCHhhhhcCC
Confidence            99999999999999999999997543

>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*

Probab=100.00  E-value=1.5e-39  Score=294.26  Aligned_cols=231  Identities=16%  Similarity=0.107  Sum_probs=161.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC---CCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS---PDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      +|..||+|++...    ..+.+.++++......+.|++++.+.......+   ..+|||||||+||+|.+++... .+++
T Consensus        25 ~g~~VAvK~l~~~----~~~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~~~~~~~~~lV~Ey~~~gsL~~~l~~~-~l~~   99 (303)
T 3hmm_A           25 RGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-TVTV   99 (303)
T ss_dssp             TTEEEEEEEECGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-CBCH
T ss_pred             CCEEEEEEEECcc----chhhHHHHHHHHHHhcCCCCCCCcEEEEEEecCCCceEEEEEecCCCCCcHHHHHHhC-CCCH
Confidence            6888999998643    334444454444433467889998877654333   3579999999999999999754 4677


Q ss_pred             hhhhHHHHhhhhccccccCC--------CCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRRP--------SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~--------~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~  158 (358)
                      .++..++.+++.|+.|+|..        +++||    +||||+.++.+||+|||+|+.....       ....+||+.||
T Consensus       100 ~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~DFGla~~~~~~~~~~~~~~~~~~GT~~ym  179 (303)
T 3hmm_A          100 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM  179 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEESCC-----CCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEeCCCCccccCCCCceeeeccccccccccc
Confidence            88889999999999999976        89999    9999999999999999999765322       23458999999


Q ss_pred             hhHHHhCC------CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCC--------CCcHHHHHHHHHHhCCCchhhhcCC
Q 045353          159 CPEVLLGS------KYSTSADLWSFACICFELATGDVLFDPHSGDNY--------DKDEDHLALMMELLGMMPRKIALGG  224 (358)
Q Consensus       159 aPE~l~~~------~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~--------~~~~~~l~~i~~~~g~~p~~~~~~~  224 (358)
                      |||++.+.      .|+.++|||||||++|||++|.+||........        ......+......-+..|.      
T Consensus       180 APE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~rp~------  253 (303)
T 3hmm_A          180 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCEQKLRPN------  253 (303)
T ss_dssp             CHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTTSCCCCC------
T ss_pred             CHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCccccccccchhcccccchHHHHHHHHhcccCCCC------
Confidence            99999875      367899999999999999999988854332110        0001111100000000000      


Q ss_pred             CCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          225 RYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           .       .........+..+.+|+.+||+.||++|||+.|+++.
T Consensus       254 ---------------------~-------p~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  291 (303)
T 3hmm_A          254 ---------------------I-------PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             ---------------------C-------CGGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ---------------------C-------CccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence                                 0       0000122345678999999999999999999999763

>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.8e-38  Score=294.66  Aligned_cols=269  Identities=20%  Similarity=0.281  Sum_probs=192.9

Q ss_pred             cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..||+|.+...+. ....++..++.+....+. .|++++.+....... ...+|+|||||+ |+|.+++.. ..+.
T Consensus        31 ~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~-~h~niv~l~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~~  107 (388)
T 3oz6_A           31 RRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELS-GHENIVNLLNVLRADNDRDVYLVFDYME-TDLHAVIRA-NILE  107 (388)
T ss_dssp             TTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTT-TCTTBCCEEEEEECTTSSCEEEEEECCS-EEHHHHHHH-TCCC
T ss_pred             CCCCCEEEEEEecccccChHHHHHHHHHHHHHHhcc-CCCCCCeeeeEEecCCCCEEEEEecccC-cCHHHHHHc-CCCC
Confidence            35678899998876543 344455666666665542 577888777765433 356899999998 478887765 4678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------------------------CC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------------------------QF  148 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------------------------~~  148 (358)
                      +..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....                        ..
T Consensus       108 ~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (388)
T 3oz6_A          108 PVHKQYVVYQLIKVIKYLHSGGLLHRDMKPSNILLNAECHVKVADFGLSRSFVNIRRVTNNIPLSINENTENFDDDQPIL  187 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEESSSCCCCCCCGGGCCC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEEeCCCCHHHeEEcCCCCEEecCCcccccccccccccccccccccccccccccccccc
Confidence            88899999999999999999999999    999999999999999999976421                        13


Q ss_pred             CCCccCCCcchhHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC
Q 045353          149 TNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS  227 (358)
Q Consensus       149 ~~~~gt~~Y~aPE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  227 (358)
                      +..+||++|+|||++.+ ..|+.++||||+||++|+|++|++||.+.+      ..+++..+...++.++..........
T Consensus       188 ~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~p~~~~~~~~~~~  261 (388)
T 3oz6_A          188 TDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFPGSS------TMNQLERIIGVIDFPSNEDVESIQSP  261 (388)
T ss_dssp             --CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHTSCCS
T ss_pred             cCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCCHHHHHhccCH
Confidence            44589999999999988 569999999999999999999999998765      78889999999999887655332211


Q ss_pred             --hhhhhccCCchhhhhcc---CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          228 --RDFFNRHGDLRHIRRLR---FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       228 --~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                        ..+..............   ..+...............++++.+||.+||++||++|||++|+|+||||+.-
T Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~~L~~dP~~R~t~~e~l~Hp~~~~~  335 (388)
T 3oz6_A          262 FAKTMIESLKEKVEIRQSNKRDIFTKWKNLLLKINPKADCNEEALDLLDKLLQFNPNKRISANDALKHPFVSIF  335 (388)
T ss_dssp             SHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHCTTCCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSTTTTTT
T ss_pred             HHHHHHHhCcccccccCCCHHHhCcchhhhcccccccccCCHHHHHHHHHhhccCcccCCCHHHHhCCHHHHHh
Confidence              11111000000000000   0000011111122233557889999999999999999999999999999864

>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*

Probab=100.00  E-value=1.8e-37  Score=294.70  Aligned_cols=267  Identities=20%  Similarity=0.226  Sum_probs=194.7

Q ss_pred             cccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCC----CCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS----PDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..||+|.+...+.. ...+++.++.+....+  .|++++.+........    ..+|+||||++| +|.+++....
T Consensus        48 ~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~nIv~l~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~~~~  124 (432)
T 3n9x_A           48 KNTEKNVAIKKVNRMFEDLIDCKRILREITILNRL--KSDYIIRLYDLIIPDDLLKFDELYIVLEIADS-DLKKLFKTPI  124 (432)
T ss_dssp             TTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHC--CCTTBCCEEEECCCSCTTTCCCEEEEEECCSE-EHHHHHHSSC
T ss_pred             CCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHc--CCCCcceEEEEEecCCCCcCCeEEEEEecCCc-CHHHHHhccC
Confidence            345778999998765433 4456777887777764  5777777776654433    678999999885 9999998888


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----------------------
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----------------------  147 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----------------------  147 (358)
                      .+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....                      
T Consensus       125 ~l~~~~~~~i~~qil~aL~~LH~~givHrDlkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (432)
T 3n9x_A          125 FLTEEHIKTILYNLLLGENFIHESGIIHRDLKPANCLLNQDCSVKVCDFGLARTINSEKDTNIVNDLEENEEPGPHNKNL  204 (432)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEEC-------------------------
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHeEECCCCCEEEccCCCcccccccccccccccccccccccccccch
Confidence            89999999999999999999999999999    9999999999999999999765421                      


Q ss_pred             ---CCCCccCCCcchhHHHhC-CCCCcchhhhhhhHHHHhhhcC-----------CcccCCCCCCCC-----------CC
Q 045353          148 ---FTNDIQTRQYRCPEVLLG-SKYSTSADLWSFACICFELATG-----------DVLFDPHSGDNY-----------DK  201 (358)
Q Consensus       148 ---~~~~~gt~~Y~aPE~l~~-~~~~~~~DiwSlGvil~ell~g-----------~~pf~~~~~~~~-----------~~  201 (358)
                         .+..+||++|+|||++.. ..|+.++|||||||++|+|++|           .++|.+.+....           ..
T Consensus       205 ~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~~~~~p~f~g~~~~~~~~~~~~~~~~~~~  284 (432)
T 3n9x_A          205 KKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHINDPTNRFPLFPGSSCFPLSPDRNSKKVHEKS  284 (432)
T ss_dssp             ------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTCSSGGGCCCSCCCSCSCC----------CHHH
T ss_pred             hccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccccccccccccCCCccccccCcccccccccccc
Confidence               356789999999999754 5599999999999999999984           444443321110           01


Q ss_pred             cHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCC
Q 045353          202 DEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR  281 (358)
Q Consensus       202 ~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R  281 (358)
                      ..+++..+.+++|.++.............       .............    .....+..++.+.+||.+||++||++|
T Consensus       285 ~~~ql~~i~~~~g~p~~~~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~s~~~~dLl~~mL~~dP~~R  353 (432)
T 3n9x_A          285 NRDQLNIIFNIIGTPTEDDLKNINKPEVI-------KYIKLFPHRKPIN----LKQKYPSISDDGINLLESMLKFNPNKR  353 (432)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHTCCCHHHH-------HHHHTSCCCCCCC----HHHHSTTSCHHHHHHHHHHSCSSTTTS
T ss_pred             hHHHHHHHHHhcCCCCHHHHHhccCHHHH-------HHHHhCCCCCCCC----HHHHCCCCCHHHHHHHHHHhcCCcccC
Confidence            36889999999999988765433221110       0000000000000    001113457889999999999999999


Q ss_pred             CCHHHHhcCcCcCCCCCC
Q 045353          282 PTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       282 ~ta~elL~hpwf~~~~~~  299 (358)
                      ||++|+|+||||+.-...
T Consensus       354 ~ta~e~L~Hp~f~~~~~~  371 (432)
T 3n9x_A          354 ITIDQALDHPYLKDVRKK  371 (432)
T ss_dssp             CCHHHHHTCGGGTTTCCT
T ss_pred             CCHHHHhcChhhhhccCc
Confidence            999999999999975443

>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...

Probab=100.00  E-value=1.4e-37  Score=289.07  Aligned_cols=257  Identities=23%  Similarity=0.286  Sum_probs=184.3

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-----CCCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-----SPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..||+|.+.... +....+++.++.+....+  .|++++.+.......     ....|+||||+ |++|.+++.. 
T Consensus        51 ~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~-  126 (367)
T 2fst_X           51 TKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM--KHENVIGLLDVFTPARSLEEFNDVYLVTHLM-GADLNNIVKC-  126 (367)
T ss_dssp             TTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEECSCSSGGGCCCCEEEEECC-CEECC------
T ss_pred             CCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhC--CCCCCCcEEEEEecCCccccCCeEEEEeccc-CCCHHHHHhc-
Confidence            4567889999987654 344566777777777664  577777776654322     36689999999 7899988865 


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SK  167 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~  167 (358)
                      ..+++.++..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||+|+......+..+||++|+|||++.+ ..
T Consensus       127 ~~l~~~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~~~~  206 (367)
T 2fst_X          127 QKLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTADEMTGYVATRWYRAPEIMLNWMH  206 (367)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECC---------------CCCTTCCHHHHTTCCS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCHhhEEECCCCCEEEeeccccccccccCCCcCcCcCccChHHHcCCcC
Confidence            458889999999999999999999999999    9999999999999999999887766677899999999999988 56


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh--hhhhccCCchhhhhccC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR--DFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  245 (358)
                      |+.++|||||||++|+|++|++||.+.+      ..+++..+.+.+|.++...........  .+......         
T Consensus       207 ~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~~~~~~~---------  271 (367)
T 2fst_X          207 YNQTVDIWSVGCIMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESARNYIQSLTQ---------  271 (367)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHTTCCCHHHHHHHHTSCC---------
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHHhccCC---------
Confidence            8999999999999999999999998765      688999999999998877654432211  01110000         


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      .+....    .......++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       272 ~~~~~~----~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~hp~~~~~~~  320 (367)
T 2fst_X          272 MPKMNF----ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  320 (367)
T ss_dssp             CCCCCH----HHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             CCCCCH----HHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhcChhhhhccC
Confidence            000000    0111234678999999999999999999999999999997543

>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*

Probab=100.00  E-value=3e-38  Score=287.30  Aligned_cols=259  Identities=23%  Similarity=0.231  Sum_probs=189.3

Q ss_pred             ccccccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-ccc
Q 045353           16 KVVTESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSV   93 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~   93 (358)
                      +....+|..+|+|.+...... .....+.++.+....+  .|++++.+..... .....|+|||||+| +|.+++. ...
T Consensus        39 ~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~  114 (311)
T 3niz_A           39 KAKDSQGRIVALKRIRLDAEDEGIPSTAIREISLLKEL--HHPNIVSLIDVIH-SERCLTLVFEFMEK-DLKKVLDENKT  114 (311)
T ss_dssp             EEEETTSCEEEEEEEC------CHHHHHHHHHHHHHHC--CCTTBCCEEEEEC-CSSCEEEEEECCSE-EHHHHHHTCTT
T ss_pred             EEEECCCCEEEEEEEecccccchhhHHHHHHHHHHHHc--CCCCEeeeeeEEc-cCCEEEEEEcCCCC-CHHHHHHhccC
Confidence            334556888999998765433 3345666777666664  5778887776654 34578999999997 5555544 445


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+++.++..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+.
T Consensus       115 ~~~~~~~~~~~~qi~~~l~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~  194 (311)
T 3niz_A          115 GLQDSQIKIYLYQLLRGVAHCHQHRILHRDLKPQNLLINSDGALKLADFGLARAFGIPVRSYTHEVVTLWYRAPDVLMGS  194 (311)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEETTSCCC---CCCCCCTTCCHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCchHhEEECCCCCEEEccCcCceecCCCcccccCCcccCCcCCHHHhcCC
Confidence            68889999999999999999999999999    999999999999999999987642   34456899999999999874


Q ss_pred             -CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 -~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                       .|+.++||||+||++|+|++|+.||.+..      ..+.+..+...++.++...+........+......         
T Consensus       195 ~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  259 (311)
T 3niz_A          195 KKYSTSVDIWSIGCIFAEMITGKPLFPGVT------DDDQLPKIFSILGTPNPREWPQVQELPLWKQRTFQ---------  259 (311)
T ss_dssp             CSCCTHHHHHHHHHHHHHHHHSSCSCCCSS------TTTHHHHHHHHHCCCCTTTSGGGTTSHHHHSCCCC---------
T ss_pred             CCCCchHHhHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHHCCCChHHhhhhhccchhhhcccc---------
Confidence             58999999999999999999999998665      45677888888887765543322221111110000         


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ......  .....+..++++.+||.+||++||++|||++|+|+||||++-
T Consensus       260 -~~~~~~--~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~  307 (311)
T 3niz_A          260 -VFEKKP--WSSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMNHPYFKDL  307 (311)
T ss_dssp             -CCCCCC--HHHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTS
T ss_pred             -cccCCc--HHHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhcCcccccC
Confidence             000000  001223456789999999999999999999999999999864

>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*

Probab=100.00  E-value=4.2e-38  Score=291.77  Aligned_cols=229  Identities=18%  Similarity=0.226  Sum_probs=184.0

Q ss_pred             ccCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|++.......     ....+.++.....++  .|++++.+...... ....|+|||||+||+|.+++.....
T Consensus        35 ~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l--~hpnIv~l~~~~~~-~~~~~lv~e~~~gg~L~~~l~~~~~  111 (361)
T 2yab_A           35 STGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQV--LHPNIITLHDVYEN-RTDVVLILELVSGGELFDFLAQKES  111 (361)
T ss_dssp             TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTC--CCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHTTCSC
T ss_pred             CCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhC--CCcCCCcEEEEEEe-CCEEEEEEEcCCCCcHHHHHHhcCC
Confidence            357789999987765443     245677777776664  57788877766543 4578999999999999999988888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----cEEEEecCCceecCC--CCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----QCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~  164 (358)
                      +++..+..++.+++.|+.|+|+.+++|+    +|||++.++    .+||+|||+|.....  .....+||+.|+|||++.
T Consensus       112 l~~~~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  191 (361)
T 2yab_A          112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVN  191 (361)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCSSCEECCTTCCCCCCCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEeCCCCCccCEEEEecCCceEcCCCCccccCCCCccEECchHHc
Confidence            9999999999999999999999999999    999998877    799999999987643  345668999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..|+.++|||||||++|+|++|.+||.+.+      ....+..+.......+..                         
T Consensus       192 ~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~------~~~~~~~i~~~~~~~~~~-------------------------  240 (361)
T 2yab_A          192 YEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANITAVSYDFDEE-------------------------  240 (361)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCHH-------------------------
T ss_pred             CCCCCccccHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhcCCCCCch-------------------------
Confidence            9899999999999999999999999997654      333333333211111111                         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                   .+...+..+.+||.+||..||.+|||+.|+|+||||+.
T Consensus       241 -------------~~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~  278 (361)
T 2yab_A          241 -------------FFSQTSELAKDFIRKLLVKETRKRLTIQEALRHPWITP  278 (361)
T ss_dssp             -------------HHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTSC
T ss_pred             -------------hccCCCHHHHHHHHHHCCCChhHCcCHHHHhcCcCcCC
Confidence                         11234678999999999999999999999999999985

>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7

Probab=100.00  E-value=2e-38  Score=289.21  Aligned_cols=226  Identities=16%  Similarity=0.174  Sum_probs=184.0

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  .+...+.++......  ..|++++.+..... ....+|+|||||+||+|.+++.....+++
T Consensus        29 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~Iv~~~~~~~-~~~~~~lv~e~~~gg~L~~~l~~~~~~~~  105 (318)
T 1fot_A           29 HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI--VTHPFIIRMWGTFQ-DAQQIFMIMDYIEGGELFSLLRKSQRFPN  105 (318)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS--CCBTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHHTSSCCH
T ss_pred             CCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhh--CCCCCCceEeEEEE-eCCEEEEEEeCCCCCCHHHHHHHcCCCCH
Confidence            46778999998765432  233445555555444  46778887766544 34578999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.++.++|+.+++||    +|||++.++.+||+|||+|+.........+||+.|+|||++.+..|+.++|
T Consensus       106 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~Dfg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  185 (318)
T 1fot_A          106 PVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSID  185 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccccCCChheEEEcCCCCEEEeecCcceecCCccccccCCccccCHhHhcCCCCCcccc
Confidence            9999999999999999999999999    999999999999999999988777667789999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|..||.+.+      .......+..                                          
T Consensus       186 iwslG~il~ell~g~~pf~~~~------~~~~~~~i~~------------------------------------------  217 (318)
T 1fot_A          186 WWSFGILIYEMLAGYTPFYDSN------TMKTYEKILN------------------------------------------  217 (318)
T ss_dssp             HHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHH------------------------------------------
T ss_pred             hhhhHHHHHHHHhCCCCCCCCC------HHHHHHHHHh------------------------------------------
Confidence            9999999999999999997543      2222222221                                          


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                      ....++...+.++.+||.+||..||++|+     +++++++||||+..
T Consensus       218 ~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~hp~f~~~  265 (318)
T 1fot_A          218 AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  265 (318)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhcCccccCC
Confidence            11233445578899999999999999999     99999999999863

>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}

Probab=100.00  E-value=1.7e-38  Score=297.36  Aligned_cols=234  Identities=18%  Similarity=0.195  Sum_probs=181.7

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.......  ....+.++.....+. ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        75 ~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~-~~hp~Iv~l~~~~~~-~~~~~lV~E~~~gg~L~~~l~~~~~l~~  152 (396)
T 4dc2_A           75 KTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQA-SNHPFLVGLHSCFQT-ESRLFFVIEYVNGGDLMFHMQRQRKLPE  152 (396)
T ss_dssp             TTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHH-TTCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhc-CCCCCcCeeEEEEEE-CCEEEEEEEcCCCCcHHHHHHHcCCCCH
Confidence            456688999988765433  223445555554443 367788877765443 4578999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+..   .......+||+.|+|||++.+..|+.
T Consensus       153 ~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~  232 (396)
T 4dc2_A          153 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGF  232 (396)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCBCGGGCCHHHHTTCCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEECCCCCEEEeecceeeecccCCCccccccCCcccCCchhhcCCCCCh
Confidence            9999999999999999999999999    9999999999999999999752   23355679999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCC--CCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNY--DKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~--~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ++|||||||++|+|++|++||........  ......+.                                         
T Consensus       233 ~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~~~~-----------------------------------------  271 (396)
T 4dc2_A          233 SVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLF-----------------------------------------  271 (396)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSTTTTC------CCHHHHH-----------------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccccccccchhhHHHHH-----------------------------------------
Confidence            99999999999999999999975432111  00111111                                         


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH------HHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA------AQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta------~elL~hpwf~~~  296 (358)
                      ..+......++...+.++.+||.+||+.||.+||++      +|+++||||+.-
T Consensus       272 ~~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~ei~~Hpff~~i  325 (396)
T 4dc2_A          272 QVILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  325 (396)
T ss_dssp             HHHHHCCCCCCTTSCHHHHHHHHHHTCSCTTTSTTCSTTTHHHHHHHSTTTTTC
T ss_pred             HHHhccccCCCCcCCHHHHHHHHHHhcCCHhHcCCCCCCCCHHHHhcCccccCC
Confidence            111122334556678899999999999999999995      799999999864

>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...

Probab=100.00  E-value=1e-38  Score=293.30  Aligned_cols=226  Identities=17%  Similarity=0.203  Sum_probs=182.0

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  ...+...+.++.+....  ..|++++.+...... ...+|+||||++||+|.+++.....+++
T Consensus        28 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~  104 (337)
T 1o6l_A           28 ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN--TRHPFLTALKYAFQT-HDRLCFVMEYANGGELFFHLSRERVFTE  104 (337)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSCCCH
T ss_pred             CCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHh--CCCCcCcceEEEEEe-CCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            467789999987653  33344556666666554  467777777665543 4578999999999999999988788899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus       105 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  184 (337)
T 1o6l_A          105 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  184 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCcCCHHHEEECCCCCEEEeeccchhhcccCCCcccccccChhhCChhhhcCCCCCc
Confidence            9999999999999999999999999    99999999999999999997532   2345668999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      .......+.                                        
T Consensus       185 ~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~~i~----------------------------------------  218 (337)
T 1o6l_A          185 AVDWWGLGVVMYEMMCGRLPFYNQD------HERLFELIL----------------------------------------  218 (337)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH----------------------------------------
T ss_pred             hhhcccchhHHHHHhcCCCCCCCCC------HHHHHHHHH----------------------------------------
Confidence            9999999999999999999997543      222222221                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                        .....++...++++.+||.+||+.||++||     +++|+++||||..-
T Consensus       219 --~~~~~~p~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~h~~f~~~  267 (337)
T 1o6l_A          219 --MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLSI  267 (337)
T ss_dssp             --HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             --cCCCCCCCCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHcCCCcCCC
Confidence              112234455678899999999999999999     99999999999863

>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}

Probab=100.00  E-value=1e-38  Score=295.21  Aligned_cols=227  Identities=17%  Similarity=0.200  Sum_probs=178.2

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  ......+.++.+..... ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        46 ~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~-~~hp~Iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~  123 (353)
T 3txo_A           46 ETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLA-RNHPFLTQLFCCFQT-PDRLFFVMEFVNGGDLMFHIQKSRRFDE  123 (353)
T ss_dssp             TTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHT-TTCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhc-cCCCceeeEEEEEEe-CCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            4577899999876532  22334444554444443 367788877766543 4568999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus       124 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  203 (353)
T 3txo_A          124 ARARFYAAEIISALMFLHDKGIIYRDLKLDNVLLDHEGHCKLADFGMCKEGICNGVTTATFCGTPDYIAPEILQEMLYGP  203 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCC---------CCGGGCCHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCcccCCCHHHEEECCCCCEEEccccceeecccCCccccccCCCcCeEChhhcCCCCcCC
Confidence            9999999999999999999999999    99999999999999999997532   2345568999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|.+||.+.+      ..+....+..                                       
T Consensus       204 ~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~~i~~---------------------------------------  238 (353)
T 3txo_A          204 AVDWWAMGVLLYEMLCGHAPFEAEN------EDDLFEAILN---------------------------------------  238 (353)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH---------------------------------------
T ss_pred             ccCCCcchHHHHHHHhCCCCCCCCC------HHHHHHHHHc---------------------------------------
Confidence            9999999999999999999997654      3333333321                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH------HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA------AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta------~elL~hpwf~~~  296 (358)
                         ....++...+..+.+||.+||+.||.+||++      +|+++||||++-
T Consensus       239 ---~~~~~p~~~~~~~~~li~~lL~~dP~~R~~~~~~~~~~~il~hp~f~~~  287 (353)
T 3txo_A          239 ---DEVVYPTWLHEDATGILKSFMTKNPTMRLGSLTQGGEHAILRHPFFKEI  287 (353)
T ss_dssp             ---CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSGGGTCTHHHHTSGGGTTC
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHhhhCHHHccCCcccCCHHHHhhCCcccCC
Confidence               1223344557889999999999999999998      899999999863

>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-37  Score=282.07  Aligned_cols=254  Identities=21%  Similarity=0.210  Sum_probs=187.6

Q ss_pred             ccCcccccccccCccchh----hhHHhhHHHHHhhhhc-cCCCccccccCCCCCCCC----CCCcccccCCCCCcccccc
Q 045353           20 ESSASKENKSLYGDLTKN----QKKKVKKKAKKAAQGC-AGTEAFDESEADSKPSSP----DNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~iv~e~~~gg~L~~~~~   90 (358)
                      .+|..||+|.+.......    ......++.+....+. ..|++++.+.........    ..|+||||+.| +|.+++.
T Consensus        32 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~~~~~~~~~~lv~e~~~~-~L~~~~~  110 (308)
T 3g33_A           32 HSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATSRTDREIKVTLVFEHVDQ-DLRTYLD  110 (308)
T ss_dssp             TTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEECCSSSEEEEEEEEECCCC-BHHHHHH
T ss_pred             CCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeeccCCCCceeEEEEehhhhc-CHHHHHh
Confidence            567789999886433221    1233444444333321 246777777665433322    47899999985 9988887


Q ss_pred             cccc--cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHH
Q 045353           91 DSVV--NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEV  162 (358)
Q Consensus        91 ~~~~--~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~  162 (358)
                      ....  +++.++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|......  ....+||+.|+|||+
T Consensus       111 ~~~~~~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~  190 (308)
T 3g33_A          111 KAPPPGLPAETIKDLMRQFLRGLDFLHANCIVHRDLKPENILVTSGGTVKLADFGLARIYSYQMALTPVVVTLWYRAPEV  190 (308)
T ss_dssp             TCCTTCSCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCTTTEEECTTSCEEECSCSCTTTSTTCCCSGGGGCCCSSCCHHH
T ss_pred             hccCCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCEEEeeCccccccCCCcccCCccccccccCchH
Confidence            6543  8899999999999999999999999999    9999999999999999999765432  345589999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhhccCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFNRHGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~  241 (358)
                      +.+..|+.++|||||||++|+|++|.+||.+.+      ..+.+..+.+.++.++...+........ .+....      
T Consensus       191 ~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~------  258 (308)
T 3g33_A          191 LLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNS------EADQLGKIFDLIGLPPEDDWPRDVSLPRGAFPPRG------  258 (308)
T ss_dssp             HHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSCSSCSSCGGGSCCCC------
T ss_pred             HcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChhhccchhhccccccCCCC------
Confidence            999999999999999999999999999997655      6788889999999887665432211110 000000      


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         .    .   ......+..+..+.+||.+||++||++|||+.|+|+||||+..
T Consensus       259 ---~----~---~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h~~~~~~  303 (308)
T 3g33_A          259 ---P----R---PVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQHSYLHKD  303 (308)
T ss_dssp             ---C----C---CHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTC---
T ss_pred             ---C----C---cHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhcCccccCC
Confidence               0    0   0011223457789999999999999999999999999999864

>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*

Probab=100.00  E-value=1.1e-37  Score=295.78  Aligned_cols=265  Identities=23%  Similarity=0.323  Sum_probs=195.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhc----cCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC----AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--   93 (358)
                      .+|..||+|.+...-  .....+.++.+....+.    ..+.+++.+...... ....|+||||+. |+|.+++....  
T Consensus       120 ~~~~~vAvK~~~~~~--~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~-~~~~~lv~e~~~-~~L~~~l~~~~~~  195 (429)
T 3kvw_A          120 KVHQHVALKMVRNEK--RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTF-RNHICMTFELLS-MNLYELIKKNKFQ  195 (429)
T ss_dssp             TTTEEEEEEEECSCH--HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEE-TTEEEEEECCCC-CBHHHHHHHTTTC
T ss_pred             CCCcEEEEEEECCcc--chHHHHHHHHHHHHHHhhccccCCcCEEEEEeeccc-CCeEEEEEeccC-CCHHHHHHhccCC
Confidence            457789999987532  22233444443333321    234466665544332 357899999997 58888776543  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCc--EEEEecCCceecCCCCCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ--CKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~--vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+++..+..++.+++.|+.|+|+.+++||    +|||++.++.  +||+|||+|..........+||+.|+|||++.+..
T Consensus       196 ~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NILl~~~~~~~vkL~DFG~a~~~~~~~~~~~gt~~y~aPE~~~~~~  275 (429)
T 3kvw_A          196 GFSLPLVRKFAHSILQCLDALHKNRIIHCDLKPENILLKQQGRSGIKVIDFGSSCYEHQRVYTYIQSRFYRAPEVILGAR  275 (429)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHTEECSCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHHTBC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEccCCCcceEEeecccceecCCcccccCCCCCccChHHHhCCC
Confidence            37888999999999999999999999999    9999999987  99999999988877777889999999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC--
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF--  245 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  245 (358)
                      |+.++|||||||++|+|++|.+||.+.+      ..+++..+.+.+|.++..+.........++...+..........  
T Consensus       276 ~~~~~DiwSlG~il~elltG~~pf~~~~------~~~~l~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  349 (429)
T 3kvw_A          276 YGMPIDMWSLGCILAELLTGYPLLPGED------EGDQLACMIELLGMPSQKLLDASKRAKNFVSSKGYPRYCTVTTLSD  349 (429)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTBTTHHHHBCTTSCBTTSCEECCCC
T ss_pred             CCchHHHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCCHHHHHhhhhhhhccCCCCCccccccccccc
Confidence            9999999999999999999999998765      78899999999999999887666555555443322111000000  


Q ss_pred             -----------------CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 -----------------WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 -----------------~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                       .+.....  ...++...++.+.+||.+||++||++|||++|+|+||||+..
T Consensus       350 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~dli~~~L~~dP~~Rpta~e~L~Hpw~~~~  415 (429)
T 3kvw_A          350 GSVVLNGGRSRRGKLRGPPESREW--GNALKGCDDPLFLDFLKQCLEWDPAVRMTPGQALRHPWLRRR  415 (429)
T ss_dssp             --CEECCEECTTCCEECSTTCSCH--HHHTTTCCCHHHHHHHHHHTCSSTTTSCCHHHHHTSTTTC--
T ss_pred             ccccccccccchhhccCCccchhh--HhhccccchHHHHHHHHHHCCCChhhCCCHHHHhCChhhccC
Confidence                             0000000  001222346789999999999999999999999999999974

>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A

Probab=100.00  E-value=1.4e-37  Score=280.18  Aligned_cols=256  Identities=21%  Similarity=0.181  Sum_probs=192.5

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|.+..... ......+.++.+...++  .|++++.+..... .....|+|||||+|+.+..+......+++.
T Consensus        25 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~l~~~~~~~~~~l~~~  101 (292)
T 3o0g_A           25 ETHEIVALKRVRLDDDDEGVPSSALREICLLKEL--KHKNIVRLHDVLH-SDKKLTLVFEFCDQDLKKYFDSCNGDLDPE  101 (292)
T ss_dssp             TTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTC--CCTTBCCEEEEEE-ETTEEEEEEECCSEEHHHHHHHTTTCCCHH
T ss_pred             CCCceEEEEeeeccCCcCCcchHHHHHHHHHhcC--CCCCEeeEEeEEE-eCCEEEEEEecCCCCHHHHHHhCCCCCCHH
Confidence            4577899998875443 33446667777666664  5777777766543 345789999999987666666656778999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCC-CCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSK-YST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~-~~~  170 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+.. ++.
T Consensus       102 ~~~~~~~ql~~~l~~lH~~~ivH~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  181 (292)
T 3o0g_A          102 IVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYST  181 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHTTCSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEeecccceecCCccccccCCccccCCcChHHHcCCCCcCc
Confidence            999999999999999999999999    999999999999999999987543   234558899999999998876 899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|..||....     ...+.+..+.+.++.++...+........+.             ..+...
T Consensus       182 ~~DiwslG~il~~l~~~~~p~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~  243 (292)
T 3o0g_A          182 SIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK-------------PYPMYP  243 (292)
T ss_dssp             HHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC-------------CCCCCC
T ss_pred             hHHHHHHHHHHHHHHHcCCCCcCCC-----CHHHHHHHHHHHhCCCChhhhhhhccccccc-------------cccccc
Confidence            9999999999999998887754322     2677888899998887765443221111000             000000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .........+..+..+.+||.+||+.||++|||++|+|+||||++-
T Consensus       244 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~  289 (292)
T 3o0g_A          244 ATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSDF  289 (292)
T ss_dssp             TTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             CCcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhcCcccccC
Confidence            0001112334567889999999999999999999999999999863

>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*

Probab=100.00  E-value=8.5e-38  Score=288.23  Aligned_cols=234  Identities=19%  Similarity=0.188  Sum_probs=181.3

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  .....+.++.+...+. ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        32 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~-~~hp~iv~l~~~~~~-~~~~~lv~e~~~gg~L~~~l~~~~~l~~  109 (345)
T 3a8x_A           32 KTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQA-SNHPFLVGLHSCFQT-ESRLFFVIEYVNGGDLMFHMQRQRKLPE  109 (345)
T ss_dssp             TTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHT-TTCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhc-CCCCccCeEEEEEEe-CCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            45778999999866433  3334455555555443 367778877765543 4578999999999999999987778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+|+..   .......+||+.|+|||++.+..|+.
T Consensus       110 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  189 (345)
T 3a8x_A          110 EHARFYSAEISLALNYLHERGIIYRDLKLDNVLLDSEGHIKLTDYGMCKEGLRPGDTTSTFCGTPNYIAPEILRGEDYGF  189 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCGGGCBCSCCTTCCBCCCCSCGGGCCHHHHTTCCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEEeccccccccCCCCcccccCCCccccCccccCCCCCCh
Confidence            9999999999999999999999999    9999999999999999999753   23345668999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCC--CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYD--KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~--~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ++|||||||++|+|++|.+||.........  .....+..                                        
T Consensus       190 ~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~~~~~----------------------------------------  229 (345)
T 3a8x_A          190 SVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTEDYLFQ----------------------------------------  229 (345)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTTTTTC-------CHHHHHH----------------------------------------
T ss_pred             HHhHHHHHHHHHHHHhCCCCcCCcccccccccccHHHHHH----------------------------------------
Confidence            999999999999999999999653321100  01111110                                        


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH------HHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA------AQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta------~elL~hpwf~~~  296 (358)
                       .+......++...+..+.+||.+||+.||.+|||+      +|+++||||+.-
T Consensus       230 -~i~~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~~i~~hp~f~~~  282 (345)
T 3a8x_A          230 -VILEKQIRIPRSLSVKAASVLKSFLNKDPKERLGCHPQTGFADIQGHPFFRNV  282 (345)
T ss_dssp             -HHHHCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCCTTTHHHHHHTSGGGTTC
T ss_pred             -HHHcCCCCCCCCCCHHHHHHHHHHhcCCHhHCCCCCCcCCHHHHhcCCccCCC
Confidence             11111223455667899999999999999999995      899999999864

>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*

Probab=100.00  E-value=1.5e-37  Score=280.82  Aligned_cols=228  Identities=17%  Similarity=0.192  Sum_probs=179.4

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+|..||+|.+..... ..+..+.++.+...+  ..|++++.+...... ....|+|||||+||+|.+++... .+++.
T Consensus        42 ~~~~~~vaiK~~~~~~~-~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~-~~~~~  116 (297)
T 3fxz_A           42 VATGQEVAIRQMNLQQQ-PKKELIINEILVMRE--NKNPNIVNYLDSYLV-GDELWVVMEYLAGGSLTDVVTET-CMDEG  116 (297)
T ss_dssp             TTTCCEEEEEEEEGGGC-SCHHHHHHHHHHHHH--CCCTTBCCEEEEEEE-TTEEEEEEECCTTCBHHHHHHHS-CCCHH
T ss_pred             CCCCcEEEEEEeecccc-cHHHHHHHHHHHHhc--CCCCCCCeEeEEEEE-CCEEEEEEECCCCCCHHHHHhhc-CCCHH
Confidence            35677899998865432 334556666666555  467788877665433 34689999999999999988654 57888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|......   ....+||+.|+|||++.+..|+.+
T Consensus       117 ~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  196 (297)
T 3fxz_A          117 QIAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPK  196 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHHCSCBCTH
T ss_pred             HHHHHHHHHHHHHHHHHhCCceeCCCCHHHEEECCCCCEEEeeCCCceecCCcccccCCccCCcCccChhhhcCCCCCcH
Confidence            999999999999999999999999    9999999999999999999765432   345689999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||.+..      ....+..+......                                    
T Consensus       197 ~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~------------------------------------  234 (297)
T 3fxz_A          197 VDIWSLGIMAIEMIEGEPPYLNEN------PLRALYLIATNGTP------------------------------------  234 (297)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHHCSC------------------------------------
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCC------------------------------------
Confidence            999999999999999999996543      22332222211110                                    


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         ....+...+..+.+||.+||+.||++|||++|+|+||||+..
T Consensus       235 ---~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~h~~~~~~  276 (297)
T 3fxz_A          235 ---ELQNPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQHQFLKIA  276 (297)
T ss_dssp             ---CCSCGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCGGGGGC
T ss_pred             ---CCCCccccCHHHHHHHHHHccCChhHCcCHHHHhhChhhccc
Confidence               112234457789999999999999999999999999999864

>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...

Probab=100.00  E-value=5.5e-38  Score=289.99  Aligned_cols=226  Identities=17%  Similarity=0.152  Sum_probs=184.1

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  ..+...+.++.+....  ..+++++.+...... ...+|+||||++||+|.+++.....+++
T Consensus        64 ~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~-~~~~~lv~e~~~gg~L~~~l~~~~~~~~  140 (350)
T 1rdq_E           64 ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA--VNFPFLVKLEFSFKD-NSNLYMVMEYVAGGEMFSHLRRIGRFSE  140 (350)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHCCCCH
T ss_pred             CCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEEc-CCEEEEEEcCCCCCcHHHHHHHcCCCCH
Confidence            4678899999865432  2334455566655554  367777777655443 4578999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+|+.........+||+.|+|||++.+..|+.++|
T Consensus       141 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~~kL~DFg~a~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  220 (350)
T 1rdq_E          141 PHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVD  220 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccccCccceEEECCCCCEEEcccccceeccCCcccccCCccccCHHHhcCCCCCCcCC
Confidence            9999999999999999999999999    999999999999999999988777667789999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|.+||.+.+      .......+..                                          
T Consensus       221 iwslG~il~ell~g~~Pf~~~~------~~~~~~~i~~------------------------------------------  252 (350)
T 1rdq_E          221 WWALGVLIYEMAAGYPPFFADQ------PIQIYEKIVS------------------------------------------  252 (350)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH------------------------------------------
T ss_pred             EecccHhHhHHhhCCCCCCCCC------HHHHHHHHHc------------------------------------------
Confidence            9999999999999999997543      2222222221                                          


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                      ....++...+..+.+||.+||+.||.+||+     ++++++||||...
T Consensus       253 ~~~~~p~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~h~~f~~~  300 (350)
T 1rdq_E          253 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHhCcCcCCC
Confidence            122334456788999999999999999998     9999999999863

>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*

Probab=100.00  E-value=2.1e-37  Score=282.51  Aligned_cols=260  Identities=23%  Similarity=0.255  Sum_probs=195.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc------c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS------V   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~------~   93 (358)
                      .+|..||+|.+...........+.++.+...++  .+++++.+...... ....|+||||++| +|.+++...      .
T Consensus        28 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~-~L~~~l~~~~~~~~~~  103 (317)
T 2pmi_A           28 TTGVYVALKEVKLDSEEGTPSTAIREISLMKEL--KHENIVRLYDVIHT-ENKLTLVFEFMDN-DLKKYMDSRTVGNTPR  103 (317)
T ss_dssp             SSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTC--CBTTBCCEEEEECC-TTEEEEEEECCCC-BHHHHHHHHHSSSCCC
T ss_pred             CCCcEEEEEEeecccccccHHHHHHHHHHHHhc--CCCCcceEEEEEEE-CCeEEEEEEecCC-CHHHHHHhcccccccc
Confidence            457789999987766665667777787777664  57788877766543 4578999999995 888877543      3


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+.+..+..++.|++.|+.|+|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+.
T Consensus       104 ~~~~~~~~~~~~qi~~aL~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  183 (317)
T 2pmi_A          104 GLELNLVKYFQWQLLQGLAFCHENKILHRDLKPQNLLINKRGQLKLGDFGLARAFGIPVNTFSSEVVTLWYRAPDVLMGS  183 (317)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCSSCEETTSCCCCCCCCCSCCTTCCHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeeeCCCChHHeEEcCCCCEEECcCccceecCCCcccCCCCcccccccCchHhhCC
Confidence            47788899999999999999999999999    999999999999999999987543   23456899999999999875


Q ss_pred             -CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 -KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 -~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                       .|+.++|||||||++|+|++|+.||.+.+      ..+.+..+...+|.++...+........+....      .....
T Consensus       184 ~~~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~  251 (317)
T 2pmi_A          184 RTYSTSIDIWSCGCILAEMITGKPLFPGTN------DEEQLKLIFDIMGTPNESLWPSVTKLPKYNPNI------QQRPP  251 (317)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCTTTCGGGGGCTTCCTTC------CCCCC
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhHhhhhhhhhhccccc------ccccc
Confidence             58999999999999999999999997655      678888899999887765443211111100000      00000


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      .......  ........+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       252 ~~~~~~~--~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~  301 (317)
T 2pmi_A          252 RDLRQVL--QPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALHHPWFAEYY  301 (317)
T ss_dssp             CCSHHHH--GGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             hhHHHhh--cccccccCCHHHHHHHHHHCCCCcccCCCHHHHhCChhhhccc
Confidence            0000100  1122334577899999999999999999999999999998743

>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*

Probab=100.00  E-value=3.9e-38  Score=290.22  Aligned_cols=227  Identities=20%  Similarity=0.212  Sum_probs=181.2

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  .+....+.++....... ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        40 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~-~~hp~iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~  117 (345)
T 1xjd_A           40 KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA-WEHPFLTHMFCTFQT-KENLFFVMEYLNGGDLMYHIQSCHKFDL  117 (345)
T ss_dssp             TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHH-TTCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhc-CCCCCCCcEEEEEEe-CCEEEEEEeCCCCCcHHHHHHHcCCCCH
Confidence            4577899999876532  33344455555444443 367788877765543 4568999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus       118 ~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  197 (345)
T 1xjd_A          118 SRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNH  197 (345)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeCCCChhhEEECCCCCEEEeEChhhhhcccCCCcccCCCCCcccCChhhhcCCCCCC
Confidence            9999999999999999999999999    99999999999999999997532   2345678999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      .......+..                                       
T Consensus       198 ~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~~i~~---------------------------------------  232 (345)
T 1xjd_A          198 SVDWWSFGVLLYEMLIGQSPFHGQD------EEELFHSIRM---------------------------------------  232 (345)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH---------------------------------------
T ss_pred             hhhhHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHh---------------------------------------
Confidence            9999999999999999999997543      2222222211                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH-HHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA-QCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~-elL~hpwf~~~  296 (358)
                         ....++...+..+.+||.+||+.||++|||+. ++++||||++-
T Consensus       233 ---~~~~~p~~~s~~~~~li~~lL~~dp~~R~~~~~~i~~hp~f~~~  276 (345)
T 1xjd_A          233 ---DNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFREI  276 (345)
T ss_dssp             ---CCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTTC
T ss_pred             ---CCCCCCcccCHHHHHHHHHHhcCCHhHcCCChHHHHcCccccCC
Confidence               11123344578899999999999999999998 99999999864

>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*

Probab=100.00  E-value=8.2e-37  Score=285.67  Aligned_cols=267  Identities=19%  Similarity=0.246  Sum_probs=190.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCC----CccccccCCCCCCCCCCCcccccCCCCCcccccccc--c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGT----EAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--V   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~   93 (358)
                      .+|..||+|++...-  .......++.+.........    .+++.+..... .....|+||||++| +|.+++...  .
T Consensus        77 ~~~~~vaiK~~~~~~--~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~-~~~~~~lv~e~~~~-~L~~~l~~~~~~  152 (382)
T 2vx3_A           77 VEQEWVAIKIIKNKK--AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFM-FRNHLCLVFEMLSY-NLYDLLRNTNFR  152 (382)
T ss_dssp             TTTEEEEEEEECSSH--HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEE-ETTEEEEEEECCCC-BHHHHHHHTTTS
T ss_pred             CCCcEEEEEEEeccH--HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeec-cCCceEEEEecCCC-CHHHHHhhcCcC
Confidence            356789999987432  22233334443333322111    12444333322 23578999999975 888888654  3


Q ss_pred             ccChhhhhHHHHhhhhcccccc--CCCCCCc----cccccc--CCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHR--RPSRATR----KNLLAA--VDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h--~~~~~hr----~NILl~--~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~  165 (358)
                      .+++..+..++.+++.++.|+|  +.+++||    +|||++  .++.+||+|||+|+.........+||+.|+|||++.+
T Consensus       153 ~~~~~~~~~i~~qi~~al~~lH~~~~~ivHrDlkp~NIll~~~~~~~~kL~DFG~a~~~~~~~~~~~~t~~y~aPE~~~~  232 (382)
T 2vx3_A          153 GVSLNLTRKFAQQMCTALLFLATPELSIIHCDLKPENILLCNPKRSAIKIVDFGSSCQLGQRIYQYIQSRFYRSPEVLLG  232 (382)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHTSTTTCEECCCCSGGGEEESSTTSCCEEECCCTTCEETTCCCCSSCSCGGGCCHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccCCCCEEcCCCCcccEEEecCCCCcEEEEeccCceecccccccccCCccccChHHHcC
Confidence            4788899999999999999999  5789998    999995  4788999999999988777778899999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh---
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR---  242 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~---  242 (358)
                      ..|+.++|||||||++|+|++|++||.+.+      ..+.+..+...++.+|............++.......+...   
T Consensus       233 ~~~~~~~DiwSlG~il~elltg~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (382)
T 2vx3_A          233 MPYDLAIDMWSLGCILVEMHTGEPLFSGAN------EVDQMNKIVEVLGIPPAHILDQAPKARKFFEKLPDGTWNLKKTK  306 (382)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHTTCTTHHHHEEECTTSCEEECCCC
T ss_pred             CCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhHHHHHHHHhcccccccccccc
Confidence            999999999999999999999999998665      67888999999999998877665544444443322110000   


Q ss_pred             --------ccCCcchhhH-----------HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          243 --------LRFWPMNKVL-----------VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       243 --------~~~~~~~~~~-----------~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ..........           ...........+.+.+||.+||++||++|||++|+|+||||+..
T Consensus       307 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dli~~mL~~dP~~Rpta~e~L~hp~f~~~  379 (382)
T 2vx3_A          307 DGKREYKPPGTRKLHNILGVETGGPGGRRAGESGHTVADYLKFKDLILRMLDYDPKTRIQPYYALQHSFFKKT  379 (382)
T ss_dssp             TTCCCSCCTTCSCHHHHHTTTTTSGGGTTTTCTTCCHHHHHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGCC-
T ss_pred             ccccccCCcchhhHHHHhhccccCCCccccccccccchhhHHHHHHHHHhcCCChhhCCCHHHHhcCcccccC
Confidence                    0000000000           00011122345689999999999999999999999999999864

>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*

Probab=100.00  E-value=8.5e-38  Score=288.86  Aligned_cols=226  Identities=15%  Similarity=0.161  Sum_probs=179.2

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|++.....  ......+.++.+..... ..+++++.+...... ...+|+|||||+||+|.+++.....+++.
T Consensus        44 ~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~-~~hp~iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~~  121 (353)
T 2i0e_A           44 TDELYAVKILKKDVVIQDDDVECTMVEKRVLALP-GKPPFLTQLHSCFQT-MDRLYFVMEYVNGGDLMYHIQQVGRFKEP  121 (353)
T ss_dssp             EEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCT-TCCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSCCHH
T ss_pred             CCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhc-CCCCEEeeEEEEEEc-CCEEEEEEeCCCCCcHHHHHHhcCCCCHH
Confidence            467889999876543  22334444554444443 256677766655443 45789999999999999999877789999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.+
T Consensus       122 ~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  201 (353)
T 2i0e_A          122 HAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGKS  201 (353)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBSTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEeccCCHHHEEEcCCCcEEEEeCCcccccccCCcccccccCCccccChhhhcCCCcCCc
Confidence            999999999999999999999999    99999999999999999997532   23456689999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|++||.+.+      .......+..                                        
T Consensus       202 ~DiwslG~il~ell~G~~Pf~~~~------~~~~~~~i~~----------------------------------------  235 (353)
T 2i0e_A          202 VDWWAFGVLLYEMLAGQAPFEGED------EDELFQSIME----------------------------------------  235 (353)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH----------------------------------------
T ss_pred             ccccchHHHHHHHHcCCCCCCCCC------HHHHHHHHHh----------------------------------------
Confidence            999999999999999999997543      2233322221                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                        ....++...+.++.+||.+||..||.+||+     ++++++||||+.-
T Consensus       236 --~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~~i~~h~~f~~~  283 (353)
T 2i0e_A          236 --HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  283 (353)
T ss_dssp             --CCCCCCTTSCHHHHHHHHHHTCSCTTSCTTCSTTHHHHHHTSGGGTTC
T ss_pred             --CCCCCCCCCCHHHHHHHHHHhhcCHHHcCCCCCCCHHHHhcCccccCC
Confidence              122344556789999999999999999994     7999999999863

>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.4e-37  Score=291.56  Aligned_cols=270  Identities=16%  Similarity=0.178  Sum_probs=184.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND--------   91 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~--------   91 (358)
                      ++..+|+|.+...-.   ...+.++.+....+  .|++++.+..... ......|+||||+.| +|.+++..        
T Consensus        47 ~~~~vaiK~~~~~~~---~~~~~~E~~~l~~l--~hpniv~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~  120 (405)
T 3rgf_A           47 DDKDYALKQIEGTGI---SMSACREIALLREL--KHPNVISLQKVFLSHADRKVWLLFDYAEH-DLWHIIKFHRASKANK  120 (405)
T ss_dssp             CCCCEEEEECSSSSC---CHHHHHHHHHHHHC--CCTTBCCCCEEEEETTTTEEEEEEECCSE-EHHHHHHHHHHHC---
T ss_pred             CCeEEEEEEECCCCC---CHHHHHHHHHHHhc--CCCCeeeEeeEEecCCCCeEEEEEeCCCC-CHHHHHHHhccccccc
Confidence            567899999875432   33566666666663  5778887766542 235678999999986 66665542        


Q ss_pred             -ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccc----cCCCcEEEEecCCceecCC------CCCCCccCCC
Q 045353           92 -SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA----AVDVQCKLVDFGNACWTHK------QFTNDIQTRQ  156 (358)
Q Consensus        92 -~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl----~~~~~vkL~DFG~a~~~~~------~~~~~~gt~~  156 (358)
                       ...+++..+..++.+++.|+.|+|+.+++||    +|||+    +.++.+||+|||+|+....      .....+||+.
T Consensus       121 ~~~~l~~~~~~~i~~qi~~al~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~  200 (405)
T 3rgf_A          121 KPVQLPRGMVKSLLYQILDGIHYLHANWVLHRDLKPANILVMGEGPERGRVKIADMGFARLFNSPLKPLADLDPVVVTFW  200 (405)
T ss_dssp             ----CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECCSSTTTTCEEECCTTCCC----------------CCCT
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHHhCCEeCCCcCHHHeEEecCCCCCCcEEEEECCCceecCCCCcccccCCCceecCc
Confidence             1247888999999999999999999999999    99999    6779999999999976543      2345689999


Q ss_pred             cchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCC---CCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh
Q 045353          157 YRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGD---NYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN  232 (358)
Q Consensus       157 Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~---~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  232 (358)
                      |+|||++.+.. |+.++|||||||++|+|++|.+||.+....   ......+++..+...+|.++...|...........
T Consensus       201 y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~~~~~~~~~~~~l~~i~~~~g~p~~~~~~~~~~~~~~~~  280 (405)
T 3rgf_A          201 YRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCRQEDIKTSNPYHHDQLDRIFNVMGFPADKDWEDIKKMPEHST  280 (405)
T ss_dssp             TCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCCC------CCCCHHHHHHHHHHHCCCCTTTCGGGGGSTTHHH
T ss_pred             ccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCccccccccccchHHHHHHHHHhhCCCChhhcchhhcCcchhh
Confidence            99999999855 899999999999999999999999766532   12234688999999999887765433221111100


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                      .......   .. .................+..+.+||.+||++||.+|||++|+|+||||.+.+.+.
T Consensus       281 ~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~Ll~~~L~~dP~~R~ta~e~L~hp~f~~~~~~~  344 (405)
T 3rgf_A          281 LMKDFRR---NT-YTNCSLIKYMEKHKVKPDSKAFHLLQKLLTMDPIKRITSEQAMQDPYFLEDPLPT  344 (405)
T ss_dssp             HHHHCCG---GG-GTTCCHHHHHHTTTCCTTSHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTSSSCCC
T ss_pred             hhhhccc---cC-CCcchhhhhHhhcCCCCCHHHHHHHHHHccCCcccCCCHHHHhcChhhccCCCCc
Confidence            0000000   00 0000000000111222356789999999999999999999999999999876544

>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}

Probab=100.00  E-value=2.8e-37  Score=282.72  Aligned_cols=230  Identities=18%  Similarity=0.220  Sum_probs=183.1

Q ss_pred             ccCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|.+.......     ....+.++.+....+  .|++++.+...... ....|+|||||+||+|.+++.....
T Consensus        34 ~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~  110 (326)
T 2y0a_A           34 STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI--QHPNVITLHEVYEN-KTDVILILELVAGGELFDFLAEKES  110 (326)
T ss_dssp             TTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHTTSSC
T ss_pred             CCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhC--CCCCCCcEEEEEEe-CCEEEEEEEcCCCCCHHHHHHhcCC
Confidence            457789999887654432     356677777776664  57777777665443 4578999999999999999988888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----cEEEEecCCceecC--CCCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.++..++.+++.++.|+|+.+++|+    +|||++.++    .+||+|||+|....  ......+||+.|+|||++.
T Consensus       111 ~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  190 (326)
T 2y0a_A          111 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVN  190 (326)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSSSSSCCEEECCCTTCEECCTTSCCCCCCSCTTTCCHHHHT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHCCeEcCCCCHHHEEEecCCCCCCCEEEEECCCCeECCCCCccccccCCcCcCCceeec
Confidence            9999999999999999999999999998    999999887    89999999998764  3345668999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..|+.++|||||||++|+|++|..||.+..      ....+..+.......+..                         
T Consensus       191 ~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~~~~~~~~~~~~-------------------------  239 (326)
T 2y0a_A          191 YEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANVSAVNYEFEDE-------------------------  239 (326)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHTCCCCCHH-------------------------
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCcCCCCCCC------HHHHHHHHHhcCCCcCcc-------------------------
Confidence            9899999999999999999999999997543      333333333221111111                         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                   .....+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       240 -------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  278 (326)
T 2y0a_A          240 -------------YFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  278 (326)
T ss_dssp             -------------HHTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTSCC
T ss_pred             -------------ccccCCHHHHHHHHHHccCChhhCCCHHHHhcCCCccCC
Confidence                         112346788999999999999999999999999999853

>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}

Probab=100.00  E-value=3.7e-37  Score=292.80  Aligned_cols=229  Identities=20%  Similarity=0.238  Sum_probs=183.8

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|..... ++.....++.++.+....+  .|++++.+..... .....|+|||||.||+|.+++.....+++.
T Consensus        34 ~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l--~hpnIv~l~~~~~-~~~~~~lv~E~~~gg~L~~~i~~~~~~~e~  110 (444)
T 3soa_A           34 LAGQEYAAMIINTKKLSARDHQKLEREARICRLL--KHPNIVRLHDSIS-EEGHHYLIFDLVTGGELFEDIVAREYYSEA  110 (444)
T ss_dssp             TTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHC--CBTTBCCEEEEEE-CSSEEEEEECCCBCCBHHHHHHHCSCCCHH
T ss_pred             CCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhC--CCcCCCeEEEEEE-ECCEEEEEEEeCCCCCHHHHHHHcCCCCHH
Confidence            46778888887653 4555667778887777664  6788888776554 456789999999999999999888889999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----cccccc---CCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAA---VDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~---~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.|+|+.+++||    +|||++   .++.+||+|||+|......   ....+||+.|+|||++.+..|
T Consensus       111 ~~~~i~~qil~aL~~lH~~givHrDlKp~NIll~~~~~~~~vkL~DFG~a~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~  190 (444)
T 3soa_A          111 DASHCIQQILEAVLHCHQMGVVHRNLKPENLLLASKLKGAAVKLADFGLAIEVEGEQQAWFGFAGTPGYLSPEVLRKDPY  190 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCBCCCCSSTTEEESBSSTTCCEEECCCSSCBCCCTTCCBCCCSCSCGGGCCHHHHTTCCB
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCCHHHEEEeccCCCCcEEEccCceeEEecCCCceeecccCCcccCCHHHhcCCCC
Confidence            999999999999999999999999    999998   4578999999999765432   345689999999999999899


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|.+||.+.+      .......+.......+.                              
T Consensus       191 ~~~~DIwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~~~------------------------------  234 (444)
T 3soa_A          191 GKPVDLWACGVILYILLVGYPPFWDED------QHRLYQQIKAGAYDFPS------------------------------  234 (444)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHTCCCCCT------------------------------
T ss_pred             CCccccHHHHHHHHHHHhCCCCCCCcc------HHHHHHHHHhCCCCCCc------------------------------
Confidence            999999999999999999999997543      33333333221111110                              


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                              ......++.+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       235 --------~~~~~~s~~~~~li~~~L~~dP~~Rpta~e~L~hp~~~~  273 (444)
T 3soa_A          235 --------PEWDTVTPEAKDLINKMLTINPSKRITAAEALKHPWISH  273 (444)
T ss_dssp             --------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSCTTHH
T ss_pred             --------cccccCCHHHHHHHHHHcCCChhHCCCHHHHhcCccccC
Confidence                    111234678999999999999999999999999999974

>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=7.1e-37  Score=283.70  Aligned_cols=264  Identities=22%  Similarity=0.267  Sum_probs=190.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhc---cCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC---AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--V   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~   94 (358)
                      .+|..+|+|++...  .......+++........   ..+++++........ ....|+||||+ |++|.+++....  .
T Consensus        58 ~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~h~~iv~~~~~~~~-~~~~~lv~e~~-~~~L~~~~~~~~~~~  133 (360)
T 3llt_A           58 DNKKYYAVKVVRNI--KKYTRSAKIEADILKKIQNDDINNNNIVKYHGKFMY-YDHMCLIFEPL-GPSLYEIITRNNYNG  133 (360)
T ss_dssp             TTCCEEEEEEECSC--HHHHHHHHHHHHHHHHTCCCSTTGGGBCCEEEEEEE-TTEEEEEECCC-CCBHHHHHHHTTTCC
T ss_pred             CCCeEEEEEEeccc--hhhhhhhHHHHHHHHHhcccCCCCCCeecccceeeE-CCeeEEEEcCC-CCCHHHHHHhcCCCC
Confidence            46778999998742  233334444444443332   236677777665433 35689999999 999999887543  4


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-------------------------CCcEEEEecCCceecC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-------------------------DVQCKLVDFGNACWTH  145 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-------------------------~~~vkL~DFG~a~~~~  145 (358)
                      +++..+..++.|++.|+.|+|+.+++||    +|||++.                         ++.+||+|||+|....
T Consensus       134 ~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~  213 (360)
T 3llt_A          134 FHIEDIKLYCIEILKALNYLRKMSLTHTDLKPENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKS  213 (360)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeeeCCCCcccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecC
Confidence            7888999999999999999999999999    9999975                         7899999999998877


Q ss_pred             CCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          146 KQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       146 ~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                      ......+||+.|+|||++.+..|+.++|||||||++|+|++|+.||.+.+      ..+.+..+....+.+|........
T Consensus       214 ~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~  287 (360)
T 3llt_A          214 DYHGSIINTRQYRAPEVILNLGWDVSSDMWSFGCVLAELYTGSLLFRTHE------HMEHLAMMESIIQPIPKNMLYEAT  287 (360)
T ss_dssp             SCCCSCCSCGGGCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHTCCCCHHHHHHHT
T ss_pred             CCCcCccCcccccCcHHHcCCCCCCccchHHHHHHHHHHHHCCCCCCCCc------HHHHHHHHHHhcCCCCHHHHhhhh
Confidence            77777899999999999999999999999999999999999999997655      678888999999988876543222


Q ss_pred             CChh--hhhccCCchhhhhccCCcchhhH---HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          226 YSRD--FFNRHGDLRHIRRLRFWPMNKVL---VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       226 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                      ....  ++........++... .......   ..........++.+.+||.+||++||++|||++|+|+||||+
T Consensus       288 ~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpta~elL~hp~f~  360 (360)
T 3llt_A          288 KTNGSKYVNKDELKLAWPENA-SSINSIKHVKKCLPLYKIIKHELFCDFLYSILQIDPTLRPSPAELLKHKFLE  360 (360)
T ss_dssp             TSGGGGGEETTTTEECTTTTC-SCHHHHHHHHTCCCHHHHCCCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGC
T ss_pred             hccCccccCcccceecCcccc-cchhhhhhhhhcccccccchHHHHHHHHHHHhcCChhhCCCHHHHhcCcccC
Confidence            1110  111000000000000 0000000   000001112246788999999999999999999999999995

>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...

Probab=100.00  E-value=6e-37  Score=285.51  Aligned_cols=265  Identities=20%  Similarity=0.254  Sum_probs=181.3

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..||+|.+.... .....+++.++.+....  ..|++++.+........     ...|+|||||+| +|.+++..  
T Consensus        48 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~--l~hpniv~~~~~~~~~~~~~~~~~~~lv~e~~~~-~l~~~~~~--  122 (371)
T 2xrw_A           48 ILERNVAIKKLSRPFQNQTHAKRAYRELVLMKC--VNHKNIIGLLNVFTPQKSLEEFQDVYIVMELMDA-NLCQVIQM--  122 (371)
T ss_dssp             TTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHH--CCCTTBCCEEEEECSCCSTTTCCEEEEEEECCSE-EHHHHHHS--
T ss_pred             CCCceEEEEEeccccCChHHHHHHHHHHHHHHh--cCCCCccceEEeeccccccccccceEEEEEcCCC-CHHHHHhh--
Confidence            457789999987654 33445666777766655  35777777665543322     367999999986 56666643  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+++..+..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||+|......  ....+||+.|+|||++.+..
T Consensus       123 ~~~~~~~~~i~~qi~~al~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  202 (371)
T 2xrw_A          123 ELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMG  202 (371)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCC----------------CTTCCHHHHTTCC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHCCeecccCCHHHEEEcCCCCEEEEEeecccccccccccCCceecCCccCHHHhcCCC
Confidence            47788899999999999999999999999    9999999999999999999765433  34568999999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc-cCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR-HGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  246 (358)
                      |+.++|||||||++|+|++|..||.+.+      ..+.+..+.+.++.+++............+.. .............
T Consensus       203 ~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (371)
T 2xrw_A          203 YKENVDIWSVGCIMGEMIKGGVLFPGTD------HIDQWNKVIEQLGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLF  276 (371)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHC-CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHS
T ss_pred             CCchHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHhhhHHHHHHhhCccccccchhhhc
Confidence            9999999999999999999999998655      67788888888888777665443222111111 1100000000000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      + ..............+..+.+||.+||++||++|||++|+|+||||+..
T Consensus       277 ~-~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~hp~~~~~  325 (371)
T 2xrw_A          277 P-DVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQHPYINVW  325 (371)
T ss_dssp             C-GGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             c-cccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCCcchhhh
Confidence            0 000000000112346789999999999999999999999999999864

>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A

Probab=100.00  E-value=5e-37  Score=276.07  Aligned_cols=255  Identities=21%  Similarity=0.220  Sum_probs=186.8

Q ss_pred             ccccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-cccc
Q 045353           18 VTESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVN   95 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~   95 (358)
                      ...+|..+|+|.+..... ......+.++.+....  ..|++++.+...... ....|+||||++| +|.+++.. ...+
T Consensus        22 ~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~-~~~~~lv~e~~~~-~l~~~~~~~~~~~   97 (288)
T 1ob3_A           22 QNNYGETFALKKIRLEKEDEGIPSTTIREISILKE--LKHSNIVKLYDVIHT-KKRLVLVFEHLDQ-DLKKLLDVCEGGL   97 (288)
T ss_dssp             EETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGG--CCCTTBCCEEEEEEC-SSCEEEEEECCSE-EHHHHHHTSTTCC
T ss_pred             EcCCCCEEEEEEEeccccccccchhHHHHHHHHHh--cCCCCEeeeeeEEcc-CCeEEEEEEecCC-CHHHHHHhcccCC
Confidence            345678889998865432 3334566677666655  367778777766543 4578999999997 77777764 3567


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-C
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      ++.++..++.|++.|+.++|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+. .
T Consensus        98 ~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  177 (288)
T 1ob3_A           98 ESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKK  177 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTTCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEeECccccccCccccccccccccccccCchheeCCCC
Confidence            888999999999999999999999999    999999999999999999976542   23455889999999999875 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|.+||.+.+      ..+.+..+.+.++.++...+........+-..   .......    
T Consensus       178 ~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----  244 (288)
T 1ob3_A          178 YSTTIDIWSVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPN---FTVYEPL----  244 (288)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTT---CCCCCCC----
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHHCCCChhhchhhhcccccccc---cccccCc----
Confidence            8999999999999999999999997654      67788888888887665433221110000000   0000000    


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            ....+....++.+.+||.+||+.||++|||++|+|+||||++
T Consensus       245 ------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~  286 (288)
T 1ob3_A          245 ------PWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (288)
T ss_dssp             ------CGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             ------cHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhh
Confidence                  001122345788999999999999999999999999999985

>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B

Probab=100.00  E-value=7.4e-37  Score=283.83  Aligned_cols=229  Identities=20%  Similarity=0.228  Sum_probs=181.7

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|.+... .+.....++.++.+....+  .|++++.+..... .....|+|||||.||+|.+++.....+++.
T Consensus        52 ~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l--~hpnIv~~~~~~~-~~~~~~lv~e~~~gg~L~~~l~~~~~~~~~  128 (362)
T 2bdw_A           52 TTGLEFAAKIINTKKLSARDFQKLEREARICRKL--QHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVAREFYSEA  128 (362)
T ss_dssp             TTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHTTCSCCCHH
T ss_pred             CCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhC--CCCCCCeEEEEEE-eCCEEEEEEecCCCCCHHHHHHHcCCCCHH
Confidence            45778999998754 4455566777777777664  6778887776544 345689999999999999999888888999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..++.+++.++.|+|+.+++|+    +|||++.+   +.+||+|||+|......  ....+||+.|+|||++.+..|+
T Consensus       129 ~~~~~~~qi~~al~~lH~~~ivH~Dlkp~NIll~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  208 (362)
T 2bdw_A          129 DASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYS  208 (362)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEESCSSTTCCEEECCCTTCBCCTTCCSCCCSCSCTTTCCHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEeecCcceEecCCcccccCCCCccccCHHHHccCCCC
Confidence            999999999999999999999999    99999865   45999999999765532  3456899999999999998999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|.+||.+.+      .......+.......|.                               
T Consensus       209 ~~~DiwslG~il~~ll~g~~Pf~~~~------~~~~~~~i~~~~~~~~~-------------------------------  251 (362)
T 2bdw_A          209 KPVDIWACGVILYILLVGYPPFWDED------QHRLYAQIKAGAYDYPS-------------------------------  251 (362)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-------------------------------
T ss_pred             chhhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCc-------------------------------
Confidence            99999999999999999999997543      22333222211111110                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             .....+++.+.+||.+||+.||++|||+.|+|+||||..
T Consensus       252 -------~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~  290 (362)
T 2bdw_A          252 -------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICN  290 (362)
T ss_dssp             -------TGGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTSHHHHT
T ss_pred             -------ccccCCCHHHHHHHHHHcCCChhhCcCHHHHhcCcccCC
Confidence                   011234678999999999999999999999999999975

>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=284.50  Aligned_cols=256  Identities=21%  Similarity=0.256  Sum_probs=186.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+|+|.+...........+.++.+....+  .+++++.+..... .....|+||||++| +|.+++.. ...+++.
T Consensus        25 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~  100 (324)
T 3mtl_A           25 LTDNLVALKEIRLEHEEGAPCTAIREVSLLKDL--KHANIVTLHDIIH-TEKSLTLVFEYLDK-DLKQYLDDCGNIINMH  100 (324)
T ss_dssp             TTCCEEEEEEECC------CCCCCCCHHHHSCC--CCTTBCCEEEEEE-CSSCEEEEEECCSE-EHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEEEEecccccccchhHHHHHHHHHhc--CCCCCCeeeeEEe-eCCEEEEEeccccc-CHHHHHHhcCCCCCHH
Confidence            367789999987766655555666666666653  5677777766543 34578999999995 77776654 3457888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhC-CCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLG-SKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~-~~~~~  170 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+ ..|+.
T Consensus       101 ~~~~~~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  180 (324)
T 3mtl_A          101 NVKLFLFQLLRGLAYCHRQKVLHRDLKPQNLLINERGELKLADFGLARAKSIPTKTYDNEVVTLWYRPPDILLGSTDYST  180 (324)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEEESSCCGGGEEECTTCCEEECSSSEEECC------------CGGGCCHHHHTTCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHCCccCCCcCHHHEEECCCCCEEEccCcccccccCCccccccccCcccccChhhhcCCCCCCc
Confidence            999999999999999999999998    999999999999999999976542   2345588999999999987 45899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|+.||.+.+      ..+.+..+.+.++.++...+........+......        ......
T Consensus       181 ~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~  246 (324)
T 3mtl_A          181 QIDMWGVGCIFYEMATGRPLFPGST------VEEQLHFIFRILGTPTEETWPGILSNEEFKTYNYP--------KYRAEA  246 (324)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGCHHHHHTCCC--------CCCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCChHhchhhhcchhhcccccc--------cccchh
Confidence            9999999999999999999998665      67889999999998877655433222211110000        000000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                          .....+..++++.+||.+||++||.+|||++|+|+||||....
T Consensus       247 ----~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  289 (324)
T 3mtl_A          247 ----LLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMKHPFFLSLG  289 (324)
T ss_dssp             ----HHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGGGGC
T ss_pred             ----hhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhcChhhhhcc
Confidence                0112234567899999999999999999999999999998753

>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A

Probab=100.00  E-value=3.5e-36  Score=280.33  Aligned_cols=257  Identities=24%  Similarity=0.278  Sum_probs=190.0

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCcccccccc
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      ..+|..||+|.+.... ++...+++.++.+....+  .+++++.+........     ...|+||||+. |+|.+++.. 
T Consensus        64 ~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~-  139 (371)
T 4exu_A           64 KRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM--QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGM-  139 (371)
T ss_dssp             TTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEECSCSSSTTCCCCEEEEECCC-EEHHHHTTS-
T ss_pred             CCCCCEEEEEEecccccchhHHHHHHHHHHHHHhc--CCCCchhhhhheeccCCcccceeEEEEEcccc-ccHHHHhhc-
Confidence            3467789999987654 333456667776666653  5777777666544332     23499999999 577777644 


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SK  167 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~  167 (358)
                       .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|..........+||+.|+|||++.+ ..
T Consensus       140 -~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~  218 (371)
T 4exu_A          140 -EFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMH  218 (371)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSTTCC--------CTTCCCTTSCHHHHSCCSC
T ss_pred             -CCCHHHHHHHHHHHHHHHHHHHHCCCcCCCcCHHHeEECCCCCEEEEecCcccccccCcCCcccCccccCHHHhcCCCC
Confidence             37889999999999999999999999999    9999999999999999999887777777899999999999988 56


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||.+.+      ..+.+..+....+.++.............       .........+
T Consensus       219 ~~~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~  285 (371)
T 4exu_A          219 YNQTVDIWSVGCIMAEMLTGKTLFKGKD------YLDQLTQILKVTGVPGTEFVQKLNDKAAK-------SYIQSLPQTP  285 (371)
T ss_dssp             CCTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHTTCSCHHHH-------HHHHHSCCCC
T ss_pred             CCcHHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCcHHHHHHhhhhhhh-------hhhhccCCCc
Confidence            8999999999999999999999997655      67888999999999887765543221110       0000000000


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ...    .....+..++.+.+||.+||++||++|||+.|+|+||||+...
T Consensus       286 ~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  331 (371)
T 4exu_A          286 RKD----FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFR  331 (371)
T ss_dssp             CCC----HHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTC
T ss_pred             chh----HHHhccccChHHHHHHHHHCCCChhhcCCHHHHhcCcccccCC
Confidence            000    0012234578899999999999999999999999999998643

>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...

Probab=100.00  E-value=1.8e-36  Score=281.51  Aligned_cols=256  Identities=20%  Similarity=0.208  Sum_probs=196.0

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC----CCCCCcccccCCCCCcccccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS----SPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      ..+|..||+|.+..........++.++.+...++  .|++++.+.......    ....|+||||++| +|.+++.. ..
T Consensus        49 ~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~~~~~~iv~e~~~~-~L~~~l~~-~~  124 (364)
T 3qyz_A           49 NLNKVRVAIKKISPFEHQTYCQRTLREIKILLRF--RHENIIGINDIIRAPTIEQMKDVYIVQDLMET-DLYKLLKT-QH  124 (364)
T ss_dssp             TTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHC--CCTTBCCCCEEECCSSTTTCCCEEEEEECCSE-EHHHHHHH-CC
T ss_pred             CCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhc--CCCCCccceeEEecCCccccceEEEEEcccCc-CHHHHHHh-CC
Confidence            3467789999998766666667888888777764  577777766554332    2568999999995 88887764 34


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|......      ....+||+.|+|||++.
T Consensus       125 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  204 (364)
T 3qyz_A          125 LSNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIML  204 (364)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCeecCCCChHhEEECCCCCEEEEeCcceEecCCCCCccccccccccccCCCCCHHhc
Confidence            7888999999999999999999999999    9999999999999999999765432      34558999999999987


Q ss_pred             CCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh--hhccCCchhhh
Q 045353          165 GSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF--FNRHGDLRHIR  241 (358)
Q Consensus       165 ~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~--~~~~~~~~~~~  241 (358)
                      +.. ++.++|||||||++|+|++|++||.+.+      ..+.+..+...++.++...+.........  ......     
T Consensus       205 ~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  273 (364)
T 3qyz_A          205 NSKGYTKSIDIWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPH-----  273 (364)
T ss_dssp             TBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSS------GGGHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCC-----
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHHHhhhhhHHHHHHhcCC-----
Confidence            654 8999999999999999999999997665      66788889999998887655432211110  000000     


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                       ....+       ........+..+.+||.+||++||++|||+.|+|+||||+...
T Consensus       274 -~~~~~-------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~~~~~~  321 (364)
T 3qyz_A          274 -KNKVP-------WNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYY  321 (364)
T ss_dssp             -CCCCC-------HHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTTC
T ss_pred             -ccCCC-------HHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhcCcchhhcc
Confidence             00000       0011234567899999999999999999999999999999753

>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*

Probab=100.00  E-value=3.3e-37  Score=282.60  Aligned_cols=257  Identities=24%  Similarity=0.258  Sum_probs=185.4

Q ss_pred             cccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|..+|+|.+...... .....+.++.+...++  .+++++.+..... .....|+|||||+| +|.+++.....+++
T Consensus        56 ~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~L~~~~~~~~~~~~  131 (329)
T 3gbz_A           56 TVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKEL--QHRNIIELKSVIH-HNHRLHLIFEYAEN-DLKKYMDKNPDVSM  131 (329)
T ss_dssp             TTTTEEEEEEECCCCC--------CHHHHHHGGGC--CCTTBCCEEEEEE-ETTEEEEEEECCSE-EHHHHHHHCTTCCH
T ss_pred             CCCCceEEEEEEcccccccccchhHHHHHHHHHHc--CCCCcceEEEEEe-cCCEEEEEEecCCC-CHHHHHhhcCCCCH
Confidence            346778999998765433 3345666776666664  5777777766543 34578999999995 99998887777899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----cccccc-----CCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-----VDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-----~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..+..++.+++.++.|+|+.+++|+    +|||++     .++.+||+|||+|....   ......+||+.|+|||++.+
T Consensus       132 ~~~~~i~~ql~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~  211 (329)
T 3gbz_A          132 RVIKSFLYQLINGVNFCHSRRCLHRDLKPQNLLLSVSDASETPVLKIGDFGLARAFGIPIRQFTHEIITLWYRPPEILLG  211 (329)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEEC-----CCEEEECCTTHHHHHC-----------CCTTCCHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEECCCCCHHHEEEecCCCCccceEEECcCCCccccCCcccccCCCcCCccccCHHHhcC
Confidence            9999999999999999999999999    999994     45669999999997654   23445688999999999998


Q ss_pred             CC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      .. |+.++|||||||++|+|++|.+||.+..      ..+.+..+...++.++...+........+.......      .
T Consensus       212 ~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  279 (329)
T 3gbz_A          212 SRHYSTSVDIWSIACIWAEMLMKTPLFPGDS------EIDQLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKF------R  279 (329)
T ss_dssp             CCCCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCC------C
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHCCCCcCCCC------HHHHHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhh------c
Confidence            55 8999999999999999999999997655      678888888888887765443221111111100000      0


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ....      ....+...+.++.+||.+||++||++|||++|+|+||||+...
T Consensus       280 ~~~~------~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  326 (329)
T 3gbz_A          280 GKTL------KRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALEHPYFSHND  326 (329)
T ss_dssp             CCCH------HHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSSC
T ss_pred             cccH------hhhcccccCHHHHHHHHHHccCChhhCCCHHHHhCCcccCCCC
Confidence            0000      0011233567899999999999999999999999999999753

>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*

Probab=100.00  E-value=7.9e-37  Score=282.45  Aligned_cols=264  Identities=19%  Similarity=0.188  Sum_probs=191.0

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-------CCCCCcccccCCCCCccccccc
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-------SPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+|..+|+|.+..... ......+.++.+....+  .+++++.+.......       .+..|+|||||+|+.+..+...
T Consensus        40 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~l~~~  117 (351)
T 3mi9_A           40 KTGQKVALKKVLMENEKEGFPITALREIKILQLL--KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSNV  117 (351)
T ss_dssp             TTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHC--CCTTBCCEEEEEEEC--------CEEEEEEECCSEEHHHHHHCT
T ss_pred             CCCCEEEEEEEecccccccchHHHHHHHHHHHhc--cCCCcccHhheeeccccccccCCceEEEEEeccCCCHHHHHhhc
Confidence            5677899998765433 33345666676666654  567777665543322       4568999999997444444444


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-------CCCCCCccCCCcchh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-------KQFTNDIQTRQYRCP  160 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-------~~~~~~~gt~~Y~aP  160 (358)
                      ...+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|....       ......+||+.|+||
T Consensus       118 ~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aP  197 (351)
T 3mi9_A          118 LVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPP  197 (351)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCCCSSSSCCCCCSSCSCGGGCCH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCeeCCCCCHHHEEEcCCCCEEEccchhcccccccccccccccCCcccccCccCc
Confidence            4568899999999999999999999999999    99999999999999999997653       223455889999999


Q ss_pred             HHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+. .|+.++|||||||++|+|++|.+||.+.+      ....+..+...++.++...+........+ ......  
T Consensus       198 E~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~--  268 (351)
T 3mi9_A          198 ELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITPEVWPNVDNYELY-EKLELV--  268 (351)
T ss_dssp             HHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGCGGG-TSSCCC--
T ss_pred             hhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCChhhccccccchhh-cccccc--
Confidence            999875 48999999999999999999999998655      77888899999998877654432211111 000000  


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE  301 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~  301 (358)
                       .... ........     ....++.+.+||.+||++||++|||++|+|+||||...+.+..
T Consensus       269 -~~~~-~~~~~~~~-----~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~~~~~  323 (351)
T 3mi9_A          269 -KGQK-RKVKDRLK-----AYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMPSD  323 (351)
T ss_dssp             -SSCC-CCHHHHHH-----HHHCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGSSSCCCC
T ss_pred             -cccc-cCHHHHhh-----hccCChHHHHHHHHHhcCChhhCCCHHHHhCCCCcCCCCCccc
Confidence             0000 00000000     0112567899999999999999999999999999998665443

>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*

Probab=100.00  E-value=2.9e-37  Score=287.26  Aligned_cols=227  Identities=15%  Similarity=0.115  Sum_probs=174.3

Q ss_pred             ccCcccccccccCccchhhh--HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQK--KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++........+  ..+.++..... ....|++++.+...... ...+|+|||||+||+|.+++.....+.+
T Consensus        61 ~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll-~~~~hp~Iv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~~~  138 (373)
T 2r5t_A           61 AEEVFYAVKVLQKKAILKKKEEKHIMSERNVLL-KNVKHPFLVGLHFSFQT-ADKLYFVLDYINGGELFYHLQRERCFLE  138 (373)
T ss_dssp             TTCCEEEEEEEEGGGBC-------------CCB-CCCCCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHH-HhCCCCCCCCEEEEEEe-CCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            35667899998765443322  22223222211 22467788877665543 4578999999999999999988788899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceec---CCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWT---HKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~---~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+..   .......+||+.|+|||++.+..|+.
T Consensus       139 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~ikL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  218 (373)
T 2r5t_A          139 PRARFYAAEIASALGYLHSLNIVYRDLKPENILLDSQGHIVLTDFGLCKENIEHNSTTSTFCGTPEYLAPEVLHKQPYDR  218 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCBCGGGBCCCCCCCSBSCCCCCCCHHHHTTCCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceecCCCHHHEEECCCCCEEEeeCccccccccCCCccccccCCccccCHHHhCCCCCCc
Confidence            9999999999999999999999999    9999999999999999999753   22345668999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|.+||.+.+      .......+..                                       
T Consensus       219 ~~DiwslG~il~ell~G~~Pf~~~~------~~~~~~~i~~---------------------------------------  253 (373)
T 2r5t_A          219 TVDWWCLGAVLYEMLYGLPPFYSRN------TAEMYDNILN---------------------------------------  253 (373)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCSB------HHHHHHHHHH---------------------------------------
T ss_pred             hhhhHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHh---------------------------------------
Confidence            9999999999999999999997543      2222222221                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH----HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA----AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta----~elL~hpwf~~~  296 (358)
                         ....++...+..+.+||.+||+.||.+||++    .++++||||+.-
T Consensus       254 ---~~~~~~~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~i~~h~~f~~~  300 (373)
T 2r5t_A          254 ---KPLQLKPNITNSARHLLEGLLQKDRTKRLGAKDDFMEIKSHVFFSLI  300 (373)
T ss_dssp             ---SCCCCCSSSCHHHHHHHHHHTCSSGGGSTTTTTTHHHHHTSGGGTTC
T ss_pred             ---cccCCCCCCCHHHHHHHHHHcccCHHhCCCCCCCHHHHhCCccccCC
Confidence               1223344567889999999999999999986    699999999863

>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-38  Score=287.16  Aligned_cols=225  Identities=17%  Similarity=0.203  Sum_probs=180.3

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..||+|.+.......  ...++.++.+....  ..|++++.+...... ....|+||||+ +|+|.+++.....+++
T Consensus        32 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hpnIv~l~~~~~~-~~~~~lv~E~~-~g~l~~~l~~~~~l~~  107 (336)
T 3h4j_B           32 KTQQKVALKFISRQLLKKSDMHMRVEREISYLKL--LRHPHIIKLYDVITT-PTDIVMVIEYA-GGELFDYIVEKKRMTE  107 (336)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEECCC-CEEHHHHHHHHCSCCH
T ss_pred             CCCCEEEEEEEehHHccchhHHHHHHHHHHHHHh--CCCCCCCeEEEEEEe-CCEEEEEEECC-CCcHHHHHHHcCCCCH
Confidence            567789999987654332  23566777766665  457788877766544 35689999999 7899998887778999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCC-Cc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKY-ST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~-~~  170 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....  .....+||+.|+|||++.+..+ +.
T Consensus       108 ~~~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~DFG~s~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  187 (336)
T 3h4j_B          108 DEGRRFFQQIICAIEYCHRHKIVHRDLKPENLLLDDNLNVKIADFGLSNIMTDGNFLKTSCGSPNYAAPEVINGKLYAGP  187 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCSTTTEEECTTCCEEECCSSCTBTTTTSBTTCCCTTSTTTSCGGGSCCSGGGCH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEecCCchhhEEEcCCCCEEEEEeccceeccCCcccccccCCcCcCCHHHHcCCCCCCC
Confidence            9999999999999999999999999    999999999999999999976543  2456689999999999998876 78


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+......                                                ...
T Consensus       188 ~~DiwslG~il~~ll~g~~Pf~~~~~~~~------------------------------------------------~~~  219 (336)
T 3h4j_B          188 EVDVWSCGIVLYVMLVGRLPFDDEFIPNL------------------------------------------------FKK  219 (336)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSBCSSSTTC------------------------------------------------BCC
T ss_pred             ccchhHHHHHHHHHHhCCCCCCCccHHHH------------------------------------------------HHH
Confidence            99999999999999999999975432111                                                000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .....+..+...++.+.+||.+||+.||.+|||++|+++||||+..
T Consensus       220 i~~~~~~~p~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  265 (336)
T 3h4j_B          220 VNSCVYVMPDFLSPGAQSLIRRMIVADPMQRITIQEIRRDPWFNVN  265 (336)
T ss_dssp             CCSSCCCCCTTSCHHHHHHHHTTSCSSGGGSCCHHHHTTCHHHHTT
T ss_pred             HHcCCCCCcccCCHHHHHHHHHHcCCChhHCcCHHHHHhChhhccC
Confidence            0011223445567889999999999999999999999999999864

>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*

Probab=100.00  E-value=1e-36  Score=278.60  Aligned_cols=229  Identities=16%  Similarity=0.136  Sum_probs=177.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+...-.......++++.+....  +.+++++.+..... .....|+|||||+||+|.+++.....+++.+
T Consensus        30 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~--l~hpnIv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  106 (323)
T 3tki_A           30 VTEEAVAVKIVDMKRAVDCPENIKKEICINKM--LNHENVVKFYGHRR-EGNIQYLFLEYCSGGELFDRIEPDIGMPEPD  106 (323)
T ss_dssp             TTCCEEEEEEEECC-------CHHHHHHHHHH--CCCTTBCCEEEEEE-CSSEEEEEEECCTTEEGGGGSBTTTBCCHHH
T ss_pred             CCCcEEEEEEEEcccccchHHHHHHHHHHHHh--CCCCCCCeEEEEEe-cCCeEEEEEEcCCCCcHHHHHhhcCCCCHHH
Confidence            36778999998766655556677777766665  36777887766544 3456799999999999999999888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC-----CCCCCCccCCCcchhHHHhCCCC-C
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH-----KQFTNDIQTRQYRCPEVLLGSKY-S  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-----~~~~~~~gt~~Y~aPE~l~~~~~-~  169 (358)
                      +..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|....     ......+||+.|+|||++.+..+ +
T Consensus       107 ~~~i~~qi~~aL~~LH~~givH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  186 (323)
T 3tki_A          107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA  186 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCSCCSCGGGSCHHHHHCSSBCH
T ss_pred             HHHHHHHHHHHHHHHHHCCccccccchHHEEEeCCCCEEEEEeeccceeccCCcccccCCCccCcCccCcHHhccCCCCC
Confidence            99999999999999999999999    99999999999999999997543     12345689999999999998775 7


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.......     .....+... ..                                  
T Consensus       187 ~~~DiwslG~il~~ll~g~~pf~~~~~~~-----~~~~~~~~~-~~----------------------------------  226 (323)
T 3tki_A          187 EPVDVWSCGIVLTAMLAGELPWDQPSDSC-----QEYSDWKEK-KT----------------------------------  226 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCSSSCTTS-----HHHHHHHTT-CT----------------------------------
T ss_pred             CcccHHHHHHHHHHHHhCCCCCCCCchHH-----HHHHHHhcc-cc----------------------------------
Confidence            88999999999999999999997544211     111110000 00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                           ........+..+.+||.+||+.||++|||+.|+++||||+..
T Consensus       227 -----~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~eil~h~~~~~~  268 (323)
T 3tki_A          227 -----YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (323)
T ss_dssp             -----TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             -----cCCccccCCHHHHHHHHHHccCChhhCcCHHHHhhChhhccc
Confidence                 001123346788999999999999999999999999999864

>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*

Probab=100.00  E-value=7.4e-37  Score=280.05  Aligned_cols=226  Identities=15%  Similarity=0.160  Sum_probs=173.8

Q ss_pred             ccCcccccccccCccch---hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTK---NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++......   .....++++.+...+  +.|++++.+...... ...+|+|||||+||+|.+++.....+.
T Consensus        43 ~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~  119 (327)
T 3a62_A           43 NTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEE--VKHPFIVDLIYAFQT-GGKLYLILEYLSGGELFMQLEREGIFM  119 (327)
T ss_dssp             TTTCEEEEEEECCC--------------HHHHHHH--CCCTTBCCEEEEEEC-SSCEEEEEECCTTEEHHHHHHHHSSCC
T ss_pred             CCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHh--CCCCCccceeEEEEc-CCEEEEEEeCCCCCcHHHHHHhCCCCC
Confidence            56788999999876432   233445566665555  357777777655433 467899999999999999998877888


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..+..++.+++.++.|+|+.+++||    +|||++.++.+||+|||+++...   ......+||+.|+|||++.+..++
T Consensus       120 ~~~~~~~~~qi~~al~~lH~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  199 (327)
T 3a62_A          120 EDTACFYLAEISMALGHLHQKGIIYRDLKPENIMLNHQGHVKLTDFGLCKESIHDGTVTHTFCGTIEYMAPEILMRSGHN  199 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTEEECTTSCEEECCCSCC----------CTTSSCCTTSCHHHHTTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEEcccCCHHHeEECCCCcEEEEeCCcccccccCCccccccCCCcCccCHhhCcCCCCC
Confidence            99999999999999999999999999    99999999999999999997532   223456899999999999998999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+.+      ....+..+...                                     
T Consensus       200 ~~~DiwslG~il~el~~g~~pf~~~~------~~~~~~~i~~~-------------------------------------  236 (327)
T 3a62_A          200 RAVDWWSLGALMYDMLTGAPPFTGEN------RKKTIDKILKC-------------------------------------  236 (327)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHT-------------------------------------
T ss_pred             CcccchhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhC-------------------------------------
Confidence            99999999999999999999997543      23333332211                                     


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                           ...++...+..+.+||.+||..||.+||     |+.|+++||||+..
T Consensus       237 -----~~~~p~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~hp~f~~~  283 (327)
T 3a62_A          237 -----KLNLPPYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHI  283 (327)
T ss_dssp             -----CCCCCTTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHHSGGGSSC
T ss_pred             -----CCCCCCCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHcCCcccCC
Confidence                 1223445578899999999999999999     89999999999863

>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=4.5e-37  Score=280.76  Aligned_cols=228  Identities=19%  Similarity=0.212  Sum_probs=179.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .+|..+|+|.+...  ......++++.+....  ..|++++.+...... ....|+|||||+||+|.+++... ..+++.
T Consensus        28 ~~~~~~a~K~~~~~--~~~~~~~~~E~~~l~~--l~hpnIv~~~~~~~~-~~~~~lv~e~~~g~~L~~~l~~~~~~~~~~  102 (321)
T 1tki_A           28 SSKKTYMAKFVKVK--GTDQVLVKKEISILNI--ARHRNILHLHESFES-MEELVMIFEFISGLDIFERINTSAFELNER  102 (321)
T ss_dssp             TTTEEEEEEEECCC--THHHHHHHHHHHHHHH--SCCTTBCCEEEEEEE-TTEEEEEECCCCCCBHHHHHTSSSCCCCHH
T ss_pred             CCCcEEEEEEEecC--cccHHHHHHHHHHHHh--CCCCCCCeEeEEEec-CCEEEEEEEeCCCCCHHHHHHhcCCCCCHH
Confidence            35677888887643  3445566777766665  467788877665533 45789999999999999998765 368899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccC--CCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV--DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~--~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.+++.++.|+|+.+++|+    +|||++.  ++.+||+|||+|......  ....+||+.|+|||++.+..++.
T Consensus       103 ~~~~i~~qi~~al~~lH~~givH~Dlkp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (321)
T 1tki_A          103 EIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVST  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEccCCCCCEEEEECCCCeECCCCCccccccCChhhcCcHHhcCCCCCc
Confidence            999999999999999999999999    9999987  789999999999876432  34457999999999999988999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|.+||.+.+      ....+..+.......+..                               
T Consensus       183 ~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~~-------------------------------  225 (321)
T 1tki_A          183 ATDMWSLGTLVYVLLSGINPFLAET------NQQIIENIMNAEYTFDEE-------------------------------  225 (321)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCCCHH-------------------------------
T ss_pred             hhhHHHHHHHHHHHHhCCCCCcCCC------HHHHHHHHHcCCCCCChh-------------------------------
Confidence            9999999999999999999997544      333343333221111111                               


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             .....+.++.+||.+||..||.+|||+.|+|+||||+..
T Consensus       226 -------~~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~  264 (321)
T 1tki_A          226 -------AFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             -------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             -------hhccCCHHHHHHHHHHcCCChhHCcCHHHHhcChhhccC
Confidence                   012346789999999999999999999999999999864

>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*

Probab=100.00  E-value=1.1e-36  Score=279.31  Aligned_cols=266  Identities=20%  Similarity=0.255  Sum_probs=192.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCC----CccccccCCCCCCCCCCCcccccCCCCCccccccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGT----EAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--   93 (358)
                      .+|..||+|++...  ......++++.+....+...+    ..++....... .....|+||||+ +++|.+++....  
T Consensus        38 ~~~~~vavK~~~~~--~~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~-~~~~~~lv~e~~-~~~l~~~l~~~~~~  113 (339)
T 1z57_A           38 AGGRHVAVKIVKNV--DRYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFE-HHGHICIVFELL-GLSTYDFIKENGFL  113 (339)
T ss_dssp             TTTEEEEEEEECSS--HHHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEE-ETTEEEEEEECC-CCBHHHHHHHTTTC
T ss_pred             CCCcEEEEEEEecC--CchhHHHHHHHHHHHHhhhcCCCCceeeEeeecccc-cCCcEEEEEcCC-CCCHHHHHHhcCCC
Confidence            35778999998653  233455566665555433221    12343333222 245789999999 889999887554  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-------------------CCcEEEEecCCceecCCCCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-------------------DVQCKLVDFGNACWTHKQFTN  150 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-------------------~~~vkL~DFG~a~~~~~~~~~  150 (358)
                      .+++.++..++.|++.|+.++|+.+++|+    +|||++.                   ++.+||+|||+|.........
T Consensus       114 ~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~  193 (339)
T 1z57_A          114 PFRLDHIRKMAYQICKSVNFLHSNKLTHTDLKPENILFVQSDYTEAYNPKIKRDERTLINPDIKVVDFGSATYDDEHHST  193 (339)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCCCEEEEEC----CEEEEESCCCEEECCCSSCEETTSCCCS
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeccccccccCCccccccccccCCCceEeeCcccccCcccccc
Confidence            56788999999999999999999999999    9999987                   668999999999887777777


Q ss_pred             CccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh
Q 045353          151 DIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF  230 (358)
Q Consensus       151 ~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  230 (358)
                      .+||+.|+|||++.+..++.++|||||||++|+|++|..||.+.+      ..+.+..+...++.+|..+.........+
T Consensus       194 ~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  267 (339)
T 1z57_A          194 LVSTRHYRAPEVILALGWSQPCDVWSIGCILIEYYLGFTVFPTHD------SKEHLAMMERILGPLPKHMIQKTRKRKYF  267 (339)
T ss_dssp             SCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSC------HHHHHHHHHHHHCSCCHHHHHHCSCGGGE
T ss_pred             ccCCccccChHHhhCCCCCcchhhHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHHHhCCCCHHHHhhccchhHH
Confidence            799999999999999999999999999999999999999997654      67788889999999988766544332222


Q ss_pred             hhccCCchhhhhccC--CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          231 FNRHGDLRHIRRLRF--WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       231 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ......+........  .................++.+.+||.+||+.||.+|||+.|+|+||||+.
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~  334 (339)
T 1z57_A          268 HHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLFDLIQKMLEYDPAKRITLREALKHPFFDL  334 (339)
T ss_dssp             ETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGG
T ss_pred             hhccccccccccccchhhhcCcchhhhcccchhhHHHHHHHHHHHhCcCcccccCHHHHhcCHHHHH
Confidence            111111000000000  00000000111233456788999999999999999999999999999985

>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*

Probab=100.00  E-value=4.8e-37  Score=292.98  Aligned_cols=226  Identities=17%  Similarity=0.197  Sum_probs=173.0

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..||+|++.....  .....++.++.+....  ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus       171 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~l~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~  247 (446)
T 4ejn_A          171 ATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQN--SRHPFLTALKYSFQT-HDRLCFVMEYANGGELFFHLSRERVFSE  247 (446)
T ss_dssp             TTCCEEEEEEEEHHHHC-------------CCCC--CSCTTSCCEEEEEEE-TTEEEEEECCCSSCBHHHHHHHHSCCCH
T ss_pred             CCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHh--CCCCeEeeEEEEEee-CCEEEEEEeeCCCCcHHHHHHhcCCCCH
Confidence            4677899999876432  2233344444444333  456777777655443 3568999999999999999988788899


Q ss_pred             hhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.|+.|+|+ .+++||    +|||++.++.+||+|||+|+...   ......+||+.|+|||++.+..|+
T Consensus       248 ~~~~~~~~qi~~aL~~LH~~~giiHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  327 (446)
T 4ejn_A          248 DRARFYGAEIVSALDYLHSEKNVVYRDLKLENLMLDKDGHIKITDFGLCKEGIKDGATMKTFCGTPEYLAPEVLEDNDYG  327 (446)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCCCCGGGEEECSSSCEEECCCCCCCTTCC-----CCSSSCGGGCCHHHHHTSCCC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEECCCCHHHEEECCCCCEEEccCCCceeccCCCcccccccCCccccCHhhcCCCCCC
Confidence            9999999999999999998 999999    99999999999999999997532   234567899999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||.+.+      .......+..                                      
T Consensus       328 ~~~DiwslG~il~ell~g~~Pf~~~~------~~~~~~~i~~--------------------------------------  363 (446)
T 4ejn_A          328 RAVDWWGLGVVMYEMMCGRLPFYNQD------HEKLFELILM--------------------------------------  363 (446)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--------------------------------------
T ss_pred             CccchhhhHHHHHHHhhCCCCCCCCC------HHHHHHHHHh--------------------------------------
Confidence            99999999999999999999997543      2222222211                                      


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                          ....++...++.+.+||.+||+.||.+||     |++|+|+||||++.
T Consensus       364 ----~~~~~p~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~hp~f~~~  411 (446)
T 4ejn_A          364 ----EEIRFPRTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQHRFFAGI  411 (446)
T ss_dssp             ----CCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTTC
T ss_pred             ----CCCCCCccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHhCccccCC
Confidence                12233445678899999999999999999     99999999999874

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=100.00  E-value=5.9e-37  Score=305.58  Aligned_cols=227  Identities=15%  Similarity=0.162  Sum_probs=180.5

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  ......+.++....... ..+++++.+..... ....+|+||||++||+|.+++.....+++
T Consensus       364 ~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~-~~~~~i~~l~~~~~-~~~~~~lV~E~~~gg~L~~~l~~~~~~~~  441 (674)
T 3pfq_A          364 GTDELYAVKILKKDVVIQDDDVECTMVEKRVLALP-GKPPFLTQLHSCFQ-TMDRLYFVMEYVNGGDLMYHIQQVGRFKE  441 (674)
T ss_dssp             SSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCT-TCCTTBCCEEEECB-CSSEEEEEEECCCSCBHHHHHHHHSSCCH
T ss_pred             CCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhc-cCCCeEEEEEEEEE-eCCEEEEEEeCcCCCcHHHHHHhcCCCCH
Confidence            3566789999876532  22334444454444443 25566666655544 34578999999999999999988788999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..+..++.+++.|+.|+|+.+|+||    +||||+.++.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus       442 ~~~~~~~~qi~~aL~~LH~~gIiHrDLKp~NILl~~~g~ikL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~~  521 (674)
T 3pfq_A          442 PHAVFYAAEIAIGLFFLQSKGIIYRDLKLDNVMLDSEGHIKIADFGMCKENIWDGVTTKTFCGTPDYIAPEIIAYQPYGK  521 (674)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSEECCCCCSTTEEECSSSCEEECCCTTCEECCCTTCCBCCCCSCSSSCCHHHHTCCCBST
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEeccCChhhEEEcCCCcEEEeecceeeccccCCcccccccCCCcccCHhhhcCCCCCc
Confidence            9999999999999999999999999    99999999999999999997532   3345678999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|++||.+.+      ..+....|..                                       
T Consensus       522 ~~DvwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~---------------------------------------  556 (674)
T 3pfq_A          522 SVDWWAFGVLLYEMLAGQAPFEGED------EDELFQSIME---------------------------------------  556 (674)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHS---------------------------------------
T ss_pred             cceEechHHHHHHHHcCCCCCCCCC------HHHHHHHHHh---------------------------------------
Confidence            9999999999999999999997644      3333333321                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCH-----HHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTA-----AQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta-----~elL~hpwf~~~  296 (358)
                         ....++..+++++.+||.+||+.||++|+++     +||++||||+.-
T Consensus       557 ---~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~~~ei~~h~ff~~i  604 (674)
T 3pfq_A          557 ---HNVAYPKSMSKEAVAICKGLMTKHPGKRLGCGPEGERDIKEHAFFRYI  604 (674)
T ss_dssp             ---SCCCCCTTSCHHHHHHHHHHSCSSSTTCTTCSTTHHHHHHSSGGGSSC
T ss_pred             ---CCCCCCccCCHHHHHHHHHHccCCHHHCCCCCCCcHHHHhcCccccCC
Confidence               1223455668899999999999999999997     999999999864

>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}

Probab=100.00  E-value=8.1e-36  Score=276.42  Aligned_cols=260  Identities=20%  Similarity=0.218  Sum_probs=186.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC------CCCCCCCcccccCCCCCcc---cccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK------PSSPDNFSVDTIPNGVSVE---ERQN   90 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~iv~e~~~gg~L~---~~~~   90 (358)
                      .+|..||+|.+...-  ....++.++.+....  ..|++++.+.....      ......|+||||++|+.+.   .+..
T Consensus        46 ~~~~~vavK~~~~~~--~~~~~~~~~~~~l~~--l~h~niv~~~~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~  121 (360)
T 3e3p_A           46 STGMSVAIKKVIQDP--RFRNRELQIMQDLAV--LHHPNIVQLQSYFYTLGERDRRDIYLNVVMEYVPDTLHRCCRNYYR  121 (360)
T ss_dssp             TTCCEEEEEEEECCT--TCCCHHHHHHHHHHH--HCCTTBCCEEEEEEEECSSCTTCEEEEEEEECCSCBHHHHHHHHHT
T ss_pred             CCCCEEEEEEEecCc--cccHHHHHHHHHHHh--cCCCCcccHHHhhhccccccccceeEEEEeecccccHHHHHHHHhh
Confidence            457789999875432  222334444444443  35677776654432      1223378999999987443   3334


Q ss_pred             cccccChhhhhHHHHhhhhcccccc--CCCCCCc----ccccccC-CCcEEEEecCCceecCCC--CCCCccCCCcchhH
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHR--RPSRATR----KNLLAAV-DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPE  161 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h--~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE  161 (358)
                      ......+..+..++.+++.++.++|  +.+++|+    +|||++. ++.+||+|||+|......  ....+||+.|+|||
T Consensus       122 ~~~~~~~~~~~~~~~qi~~al~~lH~~~~~ivH~Dlkp~NIll~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE  201 (360)
T 3e3p_A          122 RQVAPPPILIKVFLFQLIRSIGCLHLPSVNVCHRDIKPHNVLVNEADGTLKLCDFGSAKKLSPSEPNVAYICSRYYRAPE  201 (360)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHTSTTTCCBCSCCCGGGEEEETTTTEEEECCCTTCBCCCTTSCCCSTTSCGGGCCHH
T ss_pred             cccCCCHHHHHHHHHHHHHHHHHHhCCCCCeecCcCCHHHEEEeCCCCcEEEeeCCCceecCCCCCcccccCCcceeCHH
Confidence            5667788899999999999999999  9999999    9999997 899999999999765432  34568999999999


Q ss_pred             HHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+.. ++.++|||||||++|+|++|..||.+.+      ....+..+.+.++.++...+.........+..       
T Consensus       202 ~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  268 (360)
T 3e3p_A          202 LIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDN------SAGQLHEIVRVLGCPSREVLRKLNPSHTDVDL-------  268 (360)
T ss_dssp             HHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCTTCCCGGG-------
T ss_pred             HHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCC------hHHHHHHHHHHcCCCCHHHHHhcccchhhccc-------
Confidence            998765 8999999999999999999999998655      67888899999998887654322211110000       


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      ......+   ............+..+.+||.+||++||.+|||+.|+|+||||+....+
T Consensus       269 ~~~~~~~---~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~~~~  324 (360)
T 3e3p_A          269 YNSKGIP---WSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALCHPYFDELHDP  324 (360)
T ss_dssp             GCCCCCC---HHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTTSGGGGGGGCT
T ss_pred             cccccCC---cccccchhhccccHHHHHHHHHHhccCccccCCHHHHhcCccccccCCc
Confidence            0000000   0000112233467899999999999999999999999999999975443

>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C

Probab=100.00  E-value=3.3e-37  Score=289.90  Aligned_cols=230  Identities=21%  Similarity=0.226  Sum_probs=167.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCccccccccc--c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDSV--V   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~~--~   94 (358)
                      .+|..+|+|.+..      ..+.+++....... ..|++++.+.....   .....+|+|||||+||+|.+++....  .
T Consensus        85 ~~~~~vAiK~~~~------~~~~~~E~~~~~~~-~~hp~iv~l~~~~~~~~~~~~~~~lv~E~~~gg~L~~~l~~~~~~~  157 (400)
T 1nxk_A           85 RTQEKFALKMLQD------CPKARREVELHWRA-SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA  157 (400)
T ss_dssp             TTCCEEEEEEEEC------SHHHHHHHHHHHHH-TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHCC---C
T ss_pred             CCCCEEEEEEeCc------chhHHHHHHHHHHh-cCCCCcceEeEEEeecccCCcEEEEEEEeCCCCcHHHHHHHhCCCC
Confidence            4577889998853      23445555444333 35677777665433   23456899999999999999987643  5


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~  165 (358)
                      +++.++..++.+++.|+.|+|+.+++||    +|||++.   ++.+||+|||+|+....  .....+||+.|+|||++.+
T Consensus       158 l~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  237 (400)
T 1nxk_A          158 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGP  237 (400)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSTTCCEEECCCTTCEECC-----------CTTCCGGGSCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCccccCcCcceEEEecCCCCccEEEEecccccccCCCCccccCCCCCCccCHhhcCC
Confidence            8899999999999999999999999999    9999998   78999999999987543  3456689999999999998


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..|+.++|||||||++|+|++|..||.+.........  ....+..  +...                           .
T Consensus       238 ~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~--~~~~i~~--~~~~---------------------------~  286 (400)
T 1nxk_A          238 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPG--MKTRIRM--GQYE---------------------------F  286 (400)
T ss_dssp             CCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCS--HHHHHHH--TCCC---------------------------C
T ss_pred             CCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHH--HHHHHHc--Cccc---------------------------C
Confidence            8999999999999999999999999976543221111  1111110  0000                           0


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                               .......++.++.+||.+||+.||++|||+.|+|+||||...
T Consensus       287 ---------~~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~hp~~~~~  328 (400)
T 1nxk_A          287 ---------PNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  328 (400)
T ss_dssp             ---------CTTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             ---------CCcccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCccccCC
Confidence                     000113457889999999999999999999999999999864

>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}

Probab=100.00  E-value=4.1e-35  Score=271.24  Aligned_cols=254  Identities=24%  Similarity=0.284  Sum_probs=190.5

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..||+|.+.... .....+++.++.+....+  .|++++.+........     ...|+||||+. |+|.+++..  
T Consensus        47 ~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~--  121 (353)
T 3coi_A           47 RSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHM--QHENVIGLLDVFTPASSLRNFYDFYLVMPFMQ-TDLQKIMGL--  121 (353)
T ss_dssp             TTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEECSCSSGGGCCCCEEEEECCS-EEGGGTTTS--
T ss_pred             CCCCEEEEEEecccccchHHHHHHHHHHHHHHhc--CCCCcccHhheEecccccccceeEEEEecccc-CCHHHHhcC--
Confidence            467889999987654 334456677777666653  5777777766544332     34699999998 588887754  


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC-CCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SKY  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~~  168 (358)
                      .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..........+||+.|+|||++.+ ..+
T Consensus       122 ~~~~~~~~~i~~qi~~al~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  201 (353)
T 3coi_A          122 KFSEEKIQYLVYQMLKGLKYIHSAGVVHRDLKPGNLAVNEDCELKILDFGLARHADAEMTGYVVTRWYRAPEVILSWMHY  201 (353)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECTTCCEEECSTTCTTC--------CCSBCCSCHHHHSCCSCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEeECCCCcEEEeecccccCCCCCccccccCcCcCCHHHHhCcCCC
Confidence            37888999999999999999999999999    9999999999999999999877666667789999999999988 568


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh--hhhccCCchhhhhccCC
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD--FFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  246 (358)
                      +.++|||||||++|+|++|..||.+.+      ..+.+..+...+|.++..+.........  +.....         ..
T Consensus       202 ~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~  266 (353)
T 3coi_A          202 NQTVDIWSVGCIMAEMLTGKTLFKGKD------YLDQLTQILKVTGVPGTEFVQKLNDKAAKSYIQSLP---------QT  266 (353)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSBSSC------HHHHHHHHHHHHCBCCHHHHTTCSCHHHHHHHHTSC---------BC
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHHHhhHHHHHHHHhCc---------CC
Confidence            999999999999999999999998655      6778888999999888776544332111  000000         00


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      +..    .........++.+.+||.+||+.||++|||++|+|+||||+...
T Consensus       267 ~~~----~~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp~f~~~~  313 (353)
T 3coi_A          267 PRK----DFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALTHPFFEPFR  313 (353)
T ss_dssp             SSC----CTTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHTSGGGTTTC
T ss_pred             CCc----cHHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhcCcchhhcc
Confidence            000    00112335578899999999999999999999999999998643

>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*

Probab=100.00  E-value=4.8e-36  Score=278.33  Aligned_cols=263  Identities=16%  Similarity=0.213  Sum_probs=185.2

Q ss_pred             ccccccCcccccccccCccchhh----------hHHhhHHHHHhhhhccCCCccccccCCCC----CCCCCCCcccccCC
Q 045353           16 KVVTESSASKENKSLYGDLTKNQ----------KKKVKKKAKKAAQGCAGTEAFDESEADSK----PSSPDNFSVDTIPN   81 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~e~~~   81 (358)
                      +....+|..||+|.+........          .+++.++.+...++  .|++++.+.....    .....+|+||||++
T Consensus        40 ~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~  117 (362)
T 3pg1_A           40 AGVDSEGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHF--HHPNILGLRDIFVHFEEPAMHKLYLVTELMR  117 (362)
T ss_dssp             EEECTTSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEEEECCTTTCCEEEEEEECCS
T ss_pred             EEECCCCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhC--CCcCccceeeeEEeccCCCcceEEEEEccCC
Confidence            33455688899998876554432          26677777777664  5777777655432    23346799999999


Q ss_pred             CCCcccccc-cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccC
Q 045353           82 GVSVEERQN-DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQT  154 (358)
Q Consensus        82 gg~L~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt  154 (358)
                      | +|.+++. ....+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|.....  .....+||
T Consensus       118 ~-~l~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t  196 (362)
T 3pg1_A          118 T-DLAQVIHDQRIVISPQHIQYFMYHILLGLHVLHEAGVVHRDLHPGNILLADNNDITICDFNLAREDTADANKTHYVTH  196 (362)
T ss_dssp             E-EHHHHHHCTTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCTTC---------------C
T ss_pred             C-CHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHCcCEecCCChHHEEEcCCCCEEEEecCcccccccccccceeccc
Confidence            5 5555554 44568889999999999999999999999999    999999999999999999975432  24456899


Q ss_pred             CCcchhHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhh
Q 045353          155 RQYRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFN  232 (358)
Q Consensus       155 ~~Y~aPE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~  232 (358)
                      +.|+|||++.+ ..++.++|||||||++|+|++|+.||.+.+      ....+..+....+.++............ .+.
T Consensus       197 ~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  270 (362)
T 3pg1_A          197 RWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALFRGST------FYNQLNKIVEVVGTPKIEDVVMFSSPSARDYL  270 (362)
T ss_dssp             GGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHHTSCHHHHHHT
T ss_pred             ceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCChHHhhhccchhhhHHH
Confidence            99999999988 568999999999999999999999997655      6788888888888876554321111000 000


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      .. ....      .+..    ......+..++.+.+||.+||++||.+|||+.|+|+||||+....
T Consensus       271 ~~-~~~~------~~~~----~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~~  325 (362)
T 3pg1_A          271 RN-SLSN------VPAR----AWTAVVPTADPVALDLIAKMLEFNPQRRISTEQALRHPYFESLFD  325 (362)
T ss_dssp             TT-CCCC------CCCC----CHHHHSTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             Hh-hccc------CChh----hHHhhCCCCCHHHHHHHHHHhcCChhhCCCHHHHHcCchhhhccC
Confidence            00 0000      0000    001123345678999999999999999999999999999997543

>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}

Probab=100.00  E-value=1e-36  Score=284.31  Aligned_cols=228  Identities=17%  Similarity=0.211  Sum_probs=181.2

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  .......+.++.+....  +.|++++.+...... ...+|+|||||.||+|.+++.....+++
T Consensus        38 ~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~--l~hp~Iv~l~~~~~~-~~~~~lv~e~~~gg~L~~~l~~~~~l~~  114 (384)
T 4fr4_A           38 DTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQG--LEHPFLVNLWYSFQD-EEDMFMVVDLLLGGDLRYHLQQNVHFKE  114 (384)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT--CCCTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHTTCCCCH
T ss_pred             CCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHh--CCCCCCCcEEEEEEe-CCEEEEEEecCCCCcHHHHHHhcCCCCH
Confidence            456678999886543  23344566667666665  367788877665543 4568999999999999999998888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhC---CCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG---SKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~---~~~  168 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....  .....+||+.|+|||++.+   ..|
T Consensus       115 ~~~~~~~~qi~~aL~~LH~~givHrDlkp~NIll~~~g~vkL~DFG~a~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~  194 (384)
T 4fr4_A          115 ETVKLFICELVMALDYLQNQRIIHRDMKPDNILLDEHGHVHITDFNIAAMLPRETQITTMAGTKPYMAPEMFSSRKGAGY  194 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCCCCSCGGGCCGGGTCCCSSCCB
T ss_pred             HHHHHHHHHHHHHHHHHHHCCceeccCcHHHeEECCCCCEEEeccceeeeccCCCceeccCCCccccCCeeeccCCCCCC
Confidence            9999999999999999999999999    999999999999999999987543  3456789999999999974   458


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||...+...   .......+.                                      
T Consensus       195 ~~~~DiwSlG~il~elltG~~Pf~~~~~~~---~~~~~~~~~--------------------------------------  233 (384)
T 4fr4_A          195 SFAVDWWSLGVTAYELLRGRRPYHIRSSTS---SKEIVHTFE--------------------------------------  233 (384)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCCTTSC---HHHHHHHHH--------------------------------------
T ss_pred             CccceeechHHHHHHHHhCCCCCCCCCCcc---HHHHHHHHh--------------------------------------
Confidence            999999999999999999999997554221   111111111                                      


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-HHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-AAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-a~elL~hpwf~~  295 (358)
                          .....++...+..+.+||.+||+.||.+||+ ++++++||||..
T Consensus       234 ----~~~~~~p~~~s~~~~~li~~lL~~dP~~R~s~~~~l~~hp~f~~  277 (384)
T 4fr4_A          234 ----TTVVTYPSAWSQEMVSLLKKLLEPNPDQRFSQLSDVQNFPYMND  277 (384)
T ss_dssp             ----HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCSHHHHHTSGGGTT
T ss_pred             ----hcccCCCCcCCHHHHHHHHHHhcCCHhHhcccHHHHHcChhhhc
Confidence                1112344556789999999999999999998 999999999986

>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*

Probab=100.00  E-value=6.3e-37  Score=288.15  Aligned_cols=229  Identities=16%  Similarity=0.126  Sum_probs=177.3

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  ..+...+++++.....  ..|++++.+...... ...+|+|||||+||+|.+++.. ..+++
T Consensus        92 ~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~--l~hp~Iv~l~~~~~~-~~~~~lV~E~~~gg~L~~~l~~-~~~~e  167 (410)
T 3v8s_A           92 STRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAF--ANSPWVVQLFYAFQD-DRYLYMVMEYMPGGDLVNLMSN-YDVPE  167 (410)
T ss_dssp             TTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHH--CCCTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHH-CCCCH
T ss_pred             CCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHh--CCCCCCCeEEEEEEE-CCEEEEEEeCCCCCcHHHHHHc-CCCCH
Confidence            3566789999865322  2233345555555544  467888887765543 4578999999999999998865 35788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC--
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK--  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~--  167 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    ....+||+.|+|||++.+..  
T Consensus       168 ~~~~~~~~qi~~aL~~LH~~givHrDLKp~NILl~~~g~ikL~DFG~a~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~  247 (410)
T 3v8s_A          168 KWARFYTAEVVLALDAIHSMGFIHRDVKPDNMLLDKSGHLKLADFGTCMKMNKEGMVRCDTAVGTPDYISPEVLKSQGGD  247 (410)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSEEECCSCCSCGGGCCHHHHHTTTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeEeccCCHHHeeECCCCCEEEeccceeEeeccCCcccccCCcCCccccCHHHhhccCCC
Confidence            8999999999999999999999999    9999999999999999999776432    34678999999999999765  


Q ss_pred             --CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          168 --YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       168 --~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                        |+.++|||||||++|+|++|++||.+.+      .......+......                              
T Consensus       248 ~~~~~~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~------------------------------  291 (410)
T 3v8s_A          248 GYYGRECDWWSVGVFLYEMLVGDTPFYADS------LVGTYSKIMNHKNS------------------------------  291 (410)
T ss_dssp             CEEETHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHHHH------------------------------
T ss_pred             cCCCCcceEecchHHHHHHHhCCCCCCCCC------hhhHHHHHHhcccc------------------------------
Confidence              8899999999999999999999997554      33333333221000                              


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                              ..++....++.++.+||.+||+.+|.+  |+|++|+++||||++.
T Consensus       292 --------~~~p~~~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~Hp~f~~~  336 (410)
T 3v8s_A          292 --------LTFPDDNDISKEAKNLICAFLTDREVRLGRNGVEEIKRHLFFKND  336 (410)
T ss_dssp             --------CCCCTTCCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHTSGGGCCS
T ss_pred             --------ccCCCcccccHHHHHHHHHHccChhhhCCCCCHHHHhcCccccCC
Confidence                    001112245788999999999999988  9999999999999874

>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A

Probab=100.00  E-value=8.5e-37  Score=279.39  Aligned_cols=235  Identities=19%  Similarity=0.232  Sum_probs=158.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+...    ......++.+..... ..|++++.+..... .....|+|||||+||+|.+++.....+++.+
T Consensus        34 ~~~~~vavK~~~~~----~~~~~~~e~~~l~~l-~~h~niv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  107 (325)
T 3kn6_A           34 KSNQAFAVKIISKR----MEANTQKEITALKLC-EGHPNIVKLHEVFH-DQLHTFLVMELLNGGELFERIKKKKHFSETE  107 (325)
T ss_dssp             TTCCEEEEEEEEGG----GHHHHHHHHHHHHHT-TTCTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHHCSCCCHHH
T ss_pred             CCCCEEEEEEEChh----hhhhHHHHHHHHHHh-cCCCCeeEEEEEEE-cCCEEEEEEEccCCCcHHHHHHhcCCCCHHH
Confidence            45778999998543    334455555554443 35778887776654 3456899999999999999998888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..++.+++.++.|+|+.+++|+    +|||++.++   .+||+|||+|.....   .....+||+.|+|||++.+..|+
T Consensus       108 ~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~  187 (325)
T 3kn6_A          108 ASYIMRKLVSAVSHMHDVGVVHRDLKPENLLFTDENDNLEIKIIDFGFARLKPPDNQPLKTPCFTLHYAAPELLNQNGYD  187 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEC----CEEEECCCTTCEECCC----------------------CCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCCeecCCCHHHEEEecCCCcccEEEeccccceecCCCCCcccccCCCcCccCHHHhcCCCCC
Confidence            99999999999999999999999    999998765   899999999976543   24556889999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCc-HHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKD-EDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~-~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++|..||.+......... .+.+..+.......+                               
T Consensus       188 ~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i~~~~~~~~-------------------------------  236 (325)
T 3kn6_A          188 ESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKIKKGDFSFE-------------------------------  236 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHHTTTCCCCC-------------------------------
T ss_pred             CccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHHHcCCCCCC-------------------------------
Confidence            999999999999999999999976542211111 111111110000000                               


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                             .......++++.+||.+||+.||.+|||++|+++||||+....
T Consensus       237 -------~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~h~w~~~~~~  279 (325)
T 3kn6_A          237 -------GEAWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRYNEWLQDGSQ  279 (325)
T ss_dssp             -------SHHHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTTCGGGCTTCC
T ss_pred             -------cccccCCCHHHHHHHHHHCCCChhHCCCHHHHhcChhhccCcc
Confidence                   0011234678999999999999999999999999999997543

>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}

Probab=100.00  E-value=2.2e-36  Score=274.68  Aligned_cols=258  Identities=21%  Similarity=0.201  Sum_probs=187.4

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|.+..... ...++.+.++.+...++  .|++++.+..... .....|+|||||+|++|.+++.....+++.
T Consensus        26 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~  102 (311)
T 4agu_A           26 DTGQIVAIKKFLESEDDPVIKKIALREIRMLKQL--KHPNLVNLLEVFR-RKRRLHLVFEYCDHTVLHELDRYQRGVPEH  102 (311)
T ss_dssp             TTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-ETTEEEEEEECCSEEHHHHHHHTSSCCCHH
T ss_pred             CCCcEEEEEEeeccccchHHHHHHHHHHHHHHhC--CCCCccchhheee-cCCeEEEEEEeCCCchHHHHHhhhcCCCHH
Confidence            3577899997755433 33456666777666664  5677777666543 345689999999999999998877778999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC-CCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG-SKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~-~~~~~  170 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......   ....+||+.|+|||++.+ ..++.
T Consensus       103 ~~~~i~~~l~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  182 (311)
T 4agu_A          103 LVKSITWQTLQAVNFCHKHNCIHRDVKPENILITKHSVIKLCDFGFARLLTGPSDYYDDEVATRWYRSPELLVGDTQYGP  182 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECC------------GGGCCHHHHHTCSCCCT
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcCCCCChhhEEEcCCCCEEEeeCCCchhccCcccccCCCcCCccccChHHHhcCCCCCc
Confidence            999999999999999999999998    9999999999999999999775432   345589999999999987 45899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|.+||.+.+      ..+.+..+...++..++.......... ++.... .   .....  ...
T Consensus       183 ~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~---~~~~~--~~~  249 (311)
T 4agu_A          183 PVDVWAIGCVFAELLSGVPLWPGKS------DVDQLYLIRKTLGDLIPRHQQVFSTNQ-YFSGVK-I---PDPED--MEP  249 (311)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHHHHTCG-GGTTCC-C---CCCSS--CCC
T ss_pred             chhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhccccccccccccccc-ccccCc-C---CCccc--cch
Confidence            9999999999999999999997655      677778888888776654321111000 000000 0   00000  000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                          .....+..+..+.+||.+||+.||++|||++|+|+||||+...
T Consensus       250 ----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~f~~~~  292 (311)
T 4agu_A          250 ----LELKFPNISYPALGLLKGCLHMDPTERLTCEQLLHHPYFENIR  292 (311)
T ss_dssp             ----HHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             ----hhhhcccccHHHHHHHHHHccCChhhcCCHHHHhcChHHHhcc
Confidence                0001124567899999999999999999999999999999753

>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=8.1e-36  Score=275.26  Aligned_cols=256  Identities=22%  Similarity=0.225  Sum_probs=187.8

Q ss_pred             ccCcccccccccCccchhh----hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccc
Q 045353           20 ESSASKENKSLYGDLTKNQ----KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~   94 (358)
                      .+|..+|+|.+........    ..++.++.+...+  +.|++++....... .....|+||||++| +|.+++.. ...
T Consensus        33 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~~~~~~~~  108 (346)
T 1ua2_A           33 NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE--LSHPNIIGLLDAFG-HKSNISLVFDFMET-DLEVIIKDNSLV  108 (346)
T ss_dssp             SCCSEEEEEEC------------CTHHHHHHHHHHH--CCCTTBCCEEEEEC-CTTCCEEEEECCSE-EHHHHHTTCCSS
T ss_pred             CCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhh--CCCCCCCeEEEEEe-eCCceEEEEEcCCC-CHHHHHHhcCcC
Confidence            3577899999876543332    2345566665555  35777777766544 34678999999997 67766654 346


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +++.++..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+|.....   .....+||+.|+|||++.+..
T Consensus       109 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~t~~y~aPE~~~~~~  188 (346)
T 1ua2_A          109 LTPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGAR  188 (346)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHEEEcCCCCEEEEecccceeccCCcccCCcccccccccCchHhhCCC
Confidence            7889999999999999999999999999    999999999999999999976542   245568999999999998754


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       |+.++|||||||++|+|++|.+||.+.+      ..+.+..+...++.++...+........+....       .....
T Consensus       189 ~~~~~~DiwslG~il~ell~g~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~  255 (346)
T 1ua2_A          189 MYGVGVDMWAVGCILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFK-------SFPGI  255 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCCCC-------CCCCC
T ss_pred             CCCchhhhHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHHHcCCCChhhhhhhccCccccccc-------ccCCC
Confidence             8999999999999999999999997655      677888888888887765543322211110000       00000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                      +       ........+..+.+||.+||+.||++|||++|+|+||||+..+.+
T Consensus       256 ~-------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h~~f~~~~~~  301 (346)
T 1ua2_A          256 P-------LHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP  301 (346)
T ss_dssp             C-------HHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCC
T ss_pred             C-------hHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcChhhhcCCCC
Confidence            0       001123456789999999999999999999999999999976543

>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*

Probab=100.00  E-value=1.2e-36  Score=288.36  Aligned_cols=227  Identities=14%  Similarity=0.174  Sum_probs=176.4

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      +|..+|+|++.....  ......++++......  ..+++++.+...... ...+|+|||||+||+|.+++.. ...+++
T Consensus        98 ~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~--~~hp~Iv~l~~~~~~-~~~~~lV~Ey~~gg~L~~~l~~~~~~l~e  174 (437)
T 4aw2_A           98 ADKVFAMKILNKWEMLKRAETACFREERDVLVN--GDSKWITTLHYAFQD-DNNLYLVMDYYVGGDLLTLLSKFEDRLPE  174 (437)
T ss_dssp             TTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHH--SCTTTBCCEEEEEEC-SSEEEEEECCCTTCBHHHHHHTTTTCCCH
T ss_pred             CCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHh--CCCCCEEEEEEEEee-CCEEEEEEecCCCCcHHHHHHHccCCCCH
Confidence            466789999875322  2222335555555544  467777777665443 4578999999999999999976 567899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHh-----
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLL-----  164 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~-----  164 (358)
                      ..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    ....+||+.|+|||++.     
T Consensus       175 ~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~~  254 (437)
T 4aw2_A          175 EMARFYLAEMVIAIDSVHQLHYVHRDIKPDNILMDMNGHIRLADFGSCLKLMEDGTVQSSVAVGTPDYISPEILQAMEGG  254 (437)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECCSCCSCGGGCCHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeEecccCHHHeeEcCCCCEEEcchhhhhhcccCCCcccccccCCcCeeChHHHhhcccC
Confidence            9999999999999999999999999    9999999999999999999765432    23468999999999998     


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..|+.++|||||||++|+|++|++||.+.+      ..+....+.....                              
T Consensus       255 ~~~~~~~~DvwSlGvil~elltG~~Pf~~~~------~~~~~~~i~~~~~------------------------------  298 (437)
T 4aw2_A          255 KGRYGPECDWWSLGVCMYEMLYGETPFYAES------LVETYGKIMNHKE------------------------------  298 (437)
T ss_dssp             CCEECTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHHH------------------------------
T ss_pred             CCCCCCcCeeHHHHHHHHHHHhCCCCCCCCC------hhHHHHhhhhccc------------------------------
Confidence            4558999999999999999999999997654      3334333332110                              


Q ss_pred             CCcchhhHHhhhcCC---hhhHHHHHHHHHhccccCCCC--CCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFN---ERDAKDMADFLVPILDFVPEK--RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~---~~~~~~~~~li~~~L~~dP~~--R~ta~elL~hpwf~~~  296 (358)
                                .+.++   ..+++++.+||.+||+.+|++  |++++|+++||||++-
T Consensus       299 ----------~~~~p~~~~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~Hpff~~i  345 (437)
T 4aw2_A          299 ----------RFQFPTQVTDVSENAKDLIRRLICSREHRLGQNGIEDFKKHPFFSGI  345 (437)
T ss_dssp             ----------HCCCCSSCCCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHTSGGGTTC
T ss_pred             ----------cccCCcccccCCHHHHHHHHHHhcccccccCCCCHHHHhCCCccCCC
Confidence                      01111   235788999999999999888  9999999999999864

>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*

Probab=100.00  E-value=1.8e-36  Score=283.93  Aligned_cols=267  Identities=13%  Similarity=0.097  Sum_probs=176.0

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      +|..||+|.+.... +......++++.+....+  .|++++.+..... .....|+|||||+||+|.+++...  ..+++
T Consensus        51 ~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  127 (389)
T 3gni_B           51 TGEYVTVRRINLEACSNEMVTFLQGELHVSKLF--NHPNIVPYRATFI-ADNELWVVTSFMAYGSAKDLICTHFMDGMNE  127 (389)
T ss_dssp             TCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-ETTEEEEEEECCTTCBHHHHHHHTCTTCCCH
T ss_pred             CCCEEEEEEecccccChHHHHHHHHHHHHHHhC--CCCCCCcEeEEEE-ECCEEEEEEEccCCCCHHHHHhhhcccCCCH
Confidence            57789999987654 344456667777766663  5778887766544 345789999999999999998754  56888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC----------CCCCCCccCCCcchhHHH
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH----------KQFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~----------~~~~~~~gt~~Y~aPE~l  163 (358)
                      ..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||.+....          ......+||+.|+|||++
T Consensus       128 ~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~  207 (389)
T 3gni_B          128 LAIAYILQGVLKALDYIHHMGYVHRSVKASHILISVDGKVYLSGLRSNLSMISHGQRQRVVHDFPKYSVKVLPWLSPEVL  207 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCGGGCEECEETTEECSCBCCCCTTCTTTGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEcccccceeeccccccccccccccccccccccccCHHHH
Confidence            9999999999999999999999999    99999999999999999885421          112334899999999999


Q ss_pred             hC--CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh------ccC
Q 045353          164 LG--SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN------RHG  235 (358)
Q Consensus       164 ~~--~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~------~~~  235 (358)
                      .+  ..|+.++|||||||++|+|++|+.||.+.+...      .+..+.  .+..+............+..      ...
T Consensus       208 ~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~------~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (389)
T 3gni_B          208 QQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQ------MLLEKL--NGTVPCLLDTSTIPAEELTMSPSRSVANS  279 (389)
T ss_dssp             STTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTT------HHHHC--------------------------------
T ss_pred             hccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHH------HHHHHh--cCCCCcccccccccccccccccccccccc
Confidence            98  569999999999999999999999997654221      111110  01111000000000000000      000


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      .......................+..+++.+.+||.+||++||++|||+.|+|+||||+....
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~Rpta~ell~hp~f~~~~~  342 (389)
T 3gni_B          280 GLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDARPSASTLLNHSFFKQIKR  342 (389)
T ss_dssp             --------------------------CCHHHHHHHHHHTCSCTTTSCCHHHHTTSGGGGGC--
T ss_pred             ccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCcccCCCHHHHhcCHHHHHHhh
Confidence            000000000000000000111244556788999999999999999999999999999987543

>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*

Probab=100.00  E-value=2.9e-36  Score=278.45  Aligned_cols=264  Identities=19%  Similarity=0.235  Sum_probs=186.9

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCC----ccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTE----AFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      ..||+|++...  ......++++.+....+...+.    .++..... ....+..|+||||+. |+|.+++...  ..++
T Consensus        46 ~~vavK~~~~~--~~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~-~~~~~~~~lv~e~~~-~~l~~~l~~~~~~~~~  121 (355)
T 2eu9_A           46 SQVALKIIRNV--GKYREAARLEINVLKKIKEKDKENKFLCVLMSDW-FNFHGHMCIAFELLG-KNTFEFLKENNFQPYP  121 (355)
T ss_dssp             EEEEEEEECSC--HHHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEE-EEETTEEEEEEECCC-CBHHHHHHHTTTCCCC
T ss_pred             eEEEEEEEccc--ccchhHHHHHHHHHHHHhhcCCCCceeEEEeeee-eeeCCeEEEEEeccC-CChHHHHHhccCCCCC
Confidence            57899998753  2334555555555444321111    13332222 223457899999995 5555554432  3578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccc-------------------cCCCcEEEEecCCceecCCCCCCCcc
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA-------------------AVDVQCKLVDFGNACWTHKQFTNDIQ  153 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl-------------------~~~~~vkL~DFG~a~~~~~~~~~~~g  153 (358)
                      +.++..++.|++.|+.++|+.+++|+    +|||+                   +.++.+||+|||+|..........+|
T Consensus       122 ~~~~~~i~~qi~~~L~~lH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g  201 (355)
T 2eu9_A          122 LPHVRHMAYQLCHALRFLHENQLTHTDLKPENILFVNSEFETLYNEHKSCEEKSVKNTSIRVADFGSATFDHEHHTTIVA  201 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEESCCCEEEEECCC-CCCEEEESCCCEEECCCTTCEETTSCCCSSCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEecccccccccccccccccccCCCcEEEeecCccccccccccCCcC
Confidence            88999999999999999999999999    99999                   56789999999999887777777899


Q ss_pred             CCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          154 TRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       154 t~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      |+.|+|||++.+..++.++|||||||++|+|++|..||.+..      ....+..+...++.+|..+.........++..
T Consensus       202 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  275 (355)
T 2eu9_A          202 TRHYRPPEVILELGWAQPCDVWSIGCILFEYYRGFTLFQTHE------NREHLVMMEKILGPIPSHMIHRTRKQKYFYKG  275 (355)
T ss_dssp             CGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHHHCSCGGGEETT
T ss_pred             CCcccCCeeeecCCCCCccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHcCCCcHHHhhhccchhhhccc
Confidence            999999999999999999999999999999999999997655      67788889999999998776544333322221


Q ss_pred             cCCchhhhhccCC--cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          234 HGDLRHIRRLRFW--PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       234 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...+.........  ................+..+.+||.+||+.||++|||+.|+|+||||+..
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~hp~f~~~  340 (355)
T 2eu9_A          276 GLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLFDLMRRMLEFDPAQRITLAEALLHPFFAGL  340 (355)
T ss_dssp             EECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHHHHHHHHTCSSTTTSCCHHHHTTSGGGGGC
T ss_pred             ccccccccchhccccccCCcccccccccchhHHHHHHHHHHHhcCChhhCcCHHHHhcChhhcCC
Confidence            1110000000000  00000000112233457789999999999999999999999999999963

>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}

Probab=100.00  E-value=7.2e-37  Score=292.79  Aligned_cols=226  Identities=18%  Similarity=0.228  Sum_probs=182.5

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..||+|.+......  +...+++++.+....  ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        39 ~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~--l~HpnIv~l~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~l~~  115 (476)
T 2y94_A           39 LTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKL--FRHPHIIKLYQVIST-PSDIFMVMEYVSGGELFDYICKNGRLDE  115 (476)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEEECCSSEEHHHHTTSSSSCCH
T ss_pred             CCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHh--CCCCCCCcEEEEEEE-CCEEEEEEeCCCCCcHHHHHHhcCCCCH
Confidence            46888999998764322  234567777766655  467788887766544 3578999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCC-Cc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKY-ST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~-~~  170 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....  .....+||+.|+|||++.+..+ +.
T Consensus       116 ~~~~~i~~qi~~aL~~LH~~givHrDLkp~NIll~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  195 (476)
T 2y94_A          116 KESRRLFQQILSGVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP  195 (476)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEECTTCCEEECCCSSCEECCTTCCBCCCCSCSTTCCHHHHTTCCBCSH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCcccccHHHEEEecCCCeEEEeccchhhccccccccccCCCcCeEChhhccCCCCCCC
Confidence            9999999999999999999999999    999999999999999999987643  3456689999999999999875 78


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+..      .......+..                                       
T Consensus       196 ~~DiwSlGvil~elltG~~Pf~~~~------~~~~~~~i~~---------------------------------------  230 (476)
T 2y94_A          196 EVDIWSSGVILYALLCGTLPFDDDH------VPTLFKKICD---------------------------------------  230 (476)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------SHHHHHHHHT---------------------------------------
T ss_pred             cceehhhHHHHHHHhhCCCCCCCCC------HHHHHHHHhc---------------------------------------
Confidence            9999999999999999999997543      2222222211                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         ..+..+...++.+.+||.+||+.||.+|||+.|+++||||+..
T Consensus       231 ---~~~~~p~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~hp~~~~~  273 (476)
T 2y94_A          231 ---GIFYTPQYLNPSVISLLKHMLQVDPMKRATIKDIREHEWFKQD  273 (476)
T ss_dssp             ---TCCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHTT
T ss_pred             ---CCcCCCccCCHHHHHHHHHHcCCCchhCcCHHHHHhCHHhhhc
Confidence               1112334456789999999999999999999999999999864

>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*

Probab=100.00  E-value=1.9e-35  Score=273.20  Aligned_cols=259  Identities=22%  Similarity=0.244  Sum_probs=191.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC----CCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS----SPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..||+|.+...-......++.++.+....+  .|++++.........    ....|+||||+. |+|.+++.. ..+
T Consensus        34 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~~~~-~~~  109 (353)
T 2b9h_A           34 PTGEIVAIKKIEPFDKPLFALRTLREIKILKHF--KHENIITIFNIQRPDSFENFNEVYIIQELMQ-TDLHRVIST-QML  109 (353)
T ss_dssp             TTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHC--CCTTBCCEEEECCCSCSTTCCCEEEEECCCS-EEHHHHHHH-CCC
T ss_pred             CCCcEEEEEeecccccchHHHHHHHHHHHHHhC--cCCCcCCeeeeecccccCccceEEEEEeccC-ccHHHHHhh-cCC
Confidence            457789999997665566666777777776664  577777776544332    367899999998 588887765 457


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------------CCCCccCCCcc
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------------FTNDIQTRQYR  158 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------------~~~~~gt~~Y~  158 (358)
                      ++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......             ....+||+.|+
T Consensus       110 ~~~~~~~~~~qi~~~L~~LH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~  189 (353)
T 2b9h_A          110 SDDHIQYFIYQTLRAVKVLHGSNVIHRDLKPSNLLINSNCDLKVCDFGLARIIDESAADNSEPTGQQSGMVEFVATRWYR  189 (353)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECC----------------CCCCCCGGGC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHeEEcCCCcEEEEecccccccccccccccCccccccchhhcccccccc
Confidence            888999999999999999999999999    9999999999999999999765421             22357899999


Q ss_pred             hhHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          159 CPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       159 aPE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      |||++.+ ..++.++|||||||++|+|++|.+||.+.+      ....+..+...+|.++...............     
T Consensus       190 aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  258 (353)
T 2b9h_A          190 APEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRD------YRHQLLLIFGIIGTPHSDNDLRCIESPRARE-----  258 (353)
T ss_dssp             CHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCSTTTTTTCCCHHHHH-----
T ss_pred             CCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCchhccccccccchhhH-----
Confidence            9999876 568999999999999999999999998665      6677888888888776432211111110000     


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                       ........+...    .....+..++.+.+||.+||+.||++|||+.|+|+||||+....
T Consensus       259 -~~~~~~~~~~~~----~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  314 (353)
T 2b9h_A          259 -YIKSLPMYPAAP----LEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALEHPYLQTYHD  314 (353)
T ss_dssp             -HHHTSCCCCCCC----HHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             -HhhcccCCCCcc----hhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhcCccccccCC
Confidence             000000000000    00112345788999999999999999999999999999987544

>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7

Probab=100.00  E-value=4.5e-36  Score=280.58  Aligned_cols=230  Identities=17%  Similarity=0.201  Sum_probs=180.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~   98 (358)
                      .+|..+|+|.+..... ..+..++++.+...++  .|++++.+...... ....|+|||||.||+|.+++.... .+++.
T Consensus        74 ~~~~~~a~K~~~~~~~-~~~~~~~~E~~il~~l--~hpnIv~~~~~~~~-~~~~~lv~E~~~gg~L~~~l~~~~~~l~~~  149 (387)
T 1kob_A           74 ATGRVFVAKFINTPYP-LDKYTVKNEISIMNQL--HHPKLINLHDAFED-KYEMVLILEFLSGGELFDRIAAEDYKMSEA  149 (387)
T ss_dssp             TTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTC--CSTTBCCEEEEEEC-SSEEEEEEECCCCCBHHHHTTCTTCCBCHH
T ss_pred             CCCCEEEEEEecccch-hhHHHHHHHHHHHHhC--CCcCCCeEEEEEEe-CCEEEEEEEcCCCCcHHHHHHhhcCCCCHH
Confidence            4577889998876543 3345677777776663  67777777665443 467899999999999999887653 68899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccC--CCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV--DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~--~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.+++.|+.|+|+.+++|+    +|||++.  ++.+||+|||+|......  ....+||+.|+|||++.+..++.
T Consensus       150 ~~~~i~~qi~~aL~~LH~~givHrDlkp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  229 (387)
T 1kob_A          150 EVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGF  229 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCH
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeecccchHHeEEecCCCCceEEEecccceecCCCcceeeeccCCCccCchhccCCCCCC
Confidence            999999999999999999999999    9999974  478999999999876532  23457999999999999989999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      ....+..+....-..+                                 
T Consensus       230 ~~DiwSlG~il~elltg~~Pf~~~~------~~~~~~~i~~~~~~~~---------------------------------  270 (387)
T 1kob_A          230 YTDMWAIGVLGYVLLSGLSPFAGED------DLETLQNVKRCDWEFD---------------------------------  270 (387)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHCCCCCC---------------------------------
T ss_pred             cccEeeHhHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCC---------------------------------
Confidence            9999999999999999999997543      3333333322110000                                 


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                           .......++.+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       271 -----~~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~  312 (387)
T 1kob_A          271 -----EDAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGDH  312 (387)
T ss_dssp             -----SSTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSCC
T ss_pred             -----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCccccCCc
Confidence                 011233467899999999999999999999999999998753

>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}

Probab=100.00  E-value=2.5e-36  Score=281.27  Aligned_cols=228  Identities=20%  Similarity=0.204  Sum_probs=180.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+|+|.+..... ..+..++++.+...++  .+++++.+...... ....|+|||||+||+|.+++.. ...+++.
T Consensus       112 ~~g~~vavK~~~~~~~-~~~~~~~~E~~~l~~l--~hpnIv~~~~~~~~-~~~~~lv~E~~~~~~L~~~l~~~~~~l~~~  187 (373)
T 2x4f_A          112 ATGLKLAAKIIKTRGM-KDKEEVKNEISVMNQL--DHANLIQLYDAFES-KNDIVLVMEYVDGGELFDRIIDESYNLTEL  187 (373)
T ss_dssp             TTCCEEEEEEEECCSH-HHHHHHHHHHHHHTTC--CCTTBCCEEEEEEC-SSEEEEEEECCTTCEEHHHHHHTGGGCCHH
T ss_pred             CCCcEEEEEEEccccc-ccHHHHHHHHHHHHhC--CCCCCCeEEEEEEE-CCEEEEEEeCCCCCcHHHHHHhcCCCCCHH
Confidence            4677899998876543 3456677777777664  67778777665443 4568999999999999987764 3467888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccc--cCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLA--AVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl--~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .+..++.+++.++.|+|+.+++|+    +|||+  +.++.+||+|||++.....  .....+||+.|+|||++.+..++.
T Consensus       188 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  267 (373)
T 2x4f_A          188 DTILFMKQICEGIRHMHQMYILHLDLKPENILCVNRDAKQIKIIDFGLARRYKPREKLKVNFGTPEFLAPEVVNYDFVSF  267 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEETTTTEEEECCCSSCEECCTTCBCCCCCSSCTTCCHHHHTTCBCCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCcccccCCHHHEEEecCCCCcEEEEeCCCceecCCccccccccCCCcEeChhhccCCCCCc
Confidence            999999999999999999999998    99999  5678999999999987643  244557999999999999888999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      ....+..+......++.                                
T Consensus       268 ~~DiwslG~il~elltg~~pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------  309 (373)
T 2x4f_A          268 PTDMWSVGVIAYMLLSGLSPFLGDN------DAETLNNILACRWDLED--------------------------------  309 (373)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCSCS--------------------------------
T ss_pred             HHhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhccCCCCh--------------------------------
Confidence            9999999999999999999997654      34444444332111110                                


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            ......++.+.+||.+||+.||.+|||+.|+|+||||..
T Consensus       310 ------~~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~hp~~~~  348 (373)
T 2x4f_A          310 ------EEFQDISEEAKEFISKLLIKEKSWRISASEALKHPWLSD  348 (373)
T ss_dssp             ------GGGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHC
T ss_pred             ------hhhccCCHHHHHHHHHHcCCChhhCCCHHHHhcCcCcCC
Confidence                  011234678999999999999999999999999999985

>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*

Probab=100.00  E-value=6.2e-36  Score=273.91  Aligned_cols=232  Identities=18%  Similarity=0.197  Sum_probs=178.3

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      .+|..+|+|.+...... ..+..+.++.+..... ..+++++.+..... .....|+|||||.||+|.+++...  ..++
T Consensus        52 ~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l-~~~~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  129 (327)
T 3lm5_A           52 STGQEYAAKFLKKRRRGQDCRAEILHEIAVLELA-KSCPRVINLHEVYE-NTSEIILILEYAAGGEIFSLCLPELAEMVS  129 (327)
T ss_dssp             TTCCEEEEEEEESEETTEECHHHHHHHHHHHHHT-TTCTTBCCEEEEEE-CSSEEEEEEECCTTEEGGGGGSSCC-CCCC
T ss_pred             CCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhc-cCCCCEEEEEEEEE-eCCeEEEEEEecCCCcHHHHHHHhcccCCC
Confidence            45778999988765433 3356666666666554 35567776665543 345689999999999999998643  5688


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||++.   ++.+||+|||++......  ....+||+.|+|||++.+..
T Consensus       130 ~~~~~~i~~ql~~~L~~LH~~givH~Dikp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~  209 (327)
T 3lm5_A          130 ENDVIRLIKQILEGVYYLHQNNIVHLDLKPQNILLSSIYPLGDIKIVDFGMSRKIGHACELREIMGTPEYLAPEILNYDP  209 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESCBTTBCCEEECCGGGCEEC---------CCCGGGCCHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCcCChHHEEEecCCCCCcEEEeeCccccccCCccccccccCCcCccCCeeecCCC
Confidence            89999999999999999999999998    9999988   789999999999876533  34568999999999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||.+..      .......+.......+.                             
T Consensus       210 ~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-----------------------------  254 (327)
T 3lm5_A          210 ITTATDMWNIGIIAYMLLTHTSPFVGED------NQETYLNISQVNVDYSE-----------------------------  254 (327)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-----------------------------
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCCCCCC------chHHHHHHHhcccccCc-----------------------------
Confidence            9999999999999999999999997544      33333333332222111                             


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                               ......+..+.+||.+||+.||.+|||++|+|+||||+...
T Consensus       255 ---------~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~h~~~~~~~  295 (327)
T 3lm5_A          255 ---------ETFSSVSQLATDFIQSLLVKNPEKRPTAEICLSHSWLQQWD  295 (327)
T ss_dssp             ---------TTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTCGGGCCCC
T ss_pred             ---------hhhcccCHHHHHHHHHHcCCChhhCcCHHHHhCCHhhcccc
Confidence                     11233467899999999999999999999999999998753

>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}

Probab=100.00  E-value=4.3e-36  Score=277.42  Aligned_cols=227  Identities=22%  Similarity=0.258  Sum_probs=163.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++..||+|++....   .++.++++.+....+  .|++++.+...... ....|+||||++||+|.+++.....+++.++
T Consensus        77 ~~~~vavK~~~~~~---~~~~~~~E~~~l~~l--~h~niv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  150 (349)
T 2w4o_A           77 TQKPYALKVLKKTV---DKKIVRTEIGVLLRL--SHPNIIKLKEIFET-PTEISLVLELVTGGELFDRIVEKGYYSERDA  150 (349)
T ss_dssp             TCCEEEEEEEEC-------------CHHHHHC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHTTCSSCCHHHH
T ss_pred             CCcEEEEEEeccch---hHHHHHHHHHHHHhC--CCCCCcceeeeEec-CCeEEEEEEeCCCCCHHHHHHhcCCCCHHHH
Confidence            46678999987653   344566666666553  57777777665443 4568999999999999999988888899999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ..++.+++.|+.|+|+.+++|+    +|||++.   ++.+||+|||++......  ....+||+.|+|||++.+..++.+
T Consensus       151 ~~i~~qi~~~L~~LH~~~ivH~Dikp~NIll~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  230 (349)
T 2w4o_A          151 ADAVKQILEAVAYLHENGIVHRDLKPENLLYATPAPDAPLKIADFGLSKIVEHQVLMKTVCGTPGYCAPEILRGCAYGPE  230 (349)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESSSSTTCCEEECCCC----------------CGGGSCHHHHTTCCCCTH
T ss_pred             HHHHHHHHHHHHHHHHCCeEecCCCcccEEEecCCCCCCEEEccCccccccCcccccccccCCCCccCHHHhcCCCCCcc
Confidence            9999999999999999999999    9999975   899999999999765432  345689999999999999899999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||.....     ....+..+.......+                                  
T Consensus       231 ~DiwslG~il~ell~g~~pf~~~~~-----~~~~~~~i~~~~~~~~----------------------------------  271 (349)
T 2w4o_A          231 VDMWSVGIITYILLCGFEPFYDERG-----DQFMFRRILNCEYYFI----------------------------------  271 (349)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCTTC-----HHHHHHHHHTTCCCCC----------------------------------
T ss_pred             cchHHHHHHHHHHHhCCCCCCCCcc-----cHHHHHHHHhCCCccC----------------------------------
Confidence            9999999999999999999965431     1212222211100000                                  


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          .......+..+.+||.+||+.||++|||+.|+|+||||...
T Consensus       272 ----~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~  312 (349)
T 2w4o_A          272 ----SPWWDEVSLNAKDLVRKLIVLDPKKRLTTFQALQHPWVTGK  312 (349)
T ss_dssp             ----TTTTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTTST
T ss_pred             ----CchhhhCCHHHHHHHHHHccCChhhCcCHHHHhcCcccCCC
Confidence                01123456789999999999999999999999999999864

>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A

Probab=100.00  E-value=1.3e-36  Score=281.06  Aligned_cols=228  Identities=18%  Similarity=0.179  Sum_probs=175.4

Q ss_pred             ccCcccccccccCccc----hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---
Q 045353           20 ESSASKENKSLYGDLT----KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---   92 (358)
                      .+|..+|+|++...-.    ......++++.+....+  .|++++.+...... ...+|+|||||+||+|.+++...   
T Consensus        47 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~~~~~~~~-~~~~~lv~e~~~g~~L~~~l~~~~~~  123 (351)
T 3c0i_A           47 ETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHML--KHPHIVELLETYSS-DGMLYMVFEFMDGADLCFEIVKRADA  123 (351)
T ss_dssp             TTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHC--CCTTBCCEEEEEEE-TTEEEEEEECCSSCBHHHHHHHHHHT
T ss_pred             CCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhC--CCCCCCcEEEEEEe-CCEEEEEEeCCCCCCHHHHHHHhccc
Confidence            4677899998754321    12356677777776664  67888877765443 46789999999999998877532   


Q ss_pred             -cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecCCC---CCCCccCCCcchhH
Q 045353           93 -VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTHKQ---FTNDIQTRQYRCPE  161 (358)
Q Consensus        93 -~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE  161 (358)
                       ..+++..+..++.|++.++.|+|+.+++||    +|||++.++.   +||+|||++......   ....+||+.|+|||
T Consensus       124 ~~~~~~~~~~~i~~qi~~al~~lH~~~ivHrDlkp~NIl~~~~~~~~~vkl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE  203 (351)
T 3c0i_A          124 GFVYSEAVASHYMRQILEALRYCHDNNIIHRDVKPHCVLLASKENSAPVKLGGFGVAIQLGESGLVAGGRVGTPHFMAPE  203 (351)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECSSSTTCCEEECCCTTCEECCTTSCBCCCCCSCGGGCCHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCChHHeEEecCCCCCcEEEecCcceeEecCCCeeecCCcCCcCccCHH
Confidence             247888999999999999999999999999    9999987654   999999999776533   34568999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..|+.++|||||||++|+|++|..||.+..       ......+.......+..                      
T Consensus       204 ~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~-------~~~~~~i~~~~~~~~~~----------------------  254 (351)
T 3c0i_A          204 VVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK-------ERLFEGIIKGKYKMNPR----------------------  254 (351)
T ss_dssp             HHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH-------HHHHHHHHHTCCCCCHH----------------------
T ss_pred             HHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH-------HHHHHHHHcCCCCCCcc----------------------
Confidence            9999999999999999999999999999996421       22222222111001000                      


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                      .....+..+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       255 ----------------~~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~hp~~~~  292 (351)
T 3c0i_A          255 ----------------QWSHISESAKDLVRRMLMLDPAERITVYEALNHPWLKE  292 (351)
T ss_dssp             ----------------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHT
T ss_pred             ----------------ccccCCHHHHHHHHHHCCCChhHCcCHHHHhcChhhcC
Confidence                            01234678999999999999999999999999999985

>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A

Probab=100.00  E-value=3.1e-36  Score=279.57  Aligned_cols=230  Identities=16%  Similarity=0.155  Sum_probs=166.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..||+|.+.....  ....++++......  +.|++++.+...... ....|+|||||+||+|.+++.....+++..
T Consensus        43 ~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~--l~hpniv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  117 (361)
T 3uc3_A           43 LTKELVAVKYIERGAA--IDENVQREIINHRS--LRHPNIVRFKEVILT-PTHLAIIMEYASGGELYERICNAGRFSEDE  117 (361)
T ss_dssp             TTCCEEEEEEEESSTT--SCHHHHHHHHHHHH--CCCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSCCHHH
T ss_pred             CCCcEEEEEEEecCcc--ccHHHHHHHHHHHh--CCCCCCCcEEEEEee-CCEEEEEEEeCCCCCHHHHHHhcCCCCHHH
Confidence            3677899999876433  23456666666555  357788877666543 456899999999999999998777899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCc--EEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ--CKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~--vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.  +||+|||+|+...  ......+||+.|+|||++.+..++.+
T Consensus       118 ~~~i~~ql~~~L~~LH~~~ivH~Dlkp~Nill~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  197 (361)
T 3uc3_A          118 ARFFFQQLLSGVSYCHSMQICHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLRQEYDGK  197 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCCCGGGEEECSSSSCCEEECCCCCC---------------CTTSCHHHHHCSSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCcccCCCCHHHEEEcCCCCceEEEeecCccccccccCCCCCCcCCCCcCChhhhcCCCCCCC
Confidence            99999999999999999999999    9999987765  9999999997432  33455689999999999999887655


Q ss_pred             -hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 -ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 -~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                       +|||||||++|+|++|+.||.+......     ....+..+.....                                 
T Consensus       198 ~~DiwslG~il~ell~g~~Pf~~~~~~~~-----~~~~~~~~~~~~~---------------------------------  239 (361)
T 3uc3_A          198 IADVWSCGVTLYVMLVGAYPFEDPEEPRD-----YRKTIQRILSVKY---------------------------------  239 (361)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCC----CCC-----HHHHHHHHHTTCC---------------------------------
T ss_pred             eeeeehhHHHHHHHHhCCCCCCCCccHHH-----HHHHHHHHhcCCC---------------------------------
Confidence             8999999999999999999975442111     1111111111100                                 


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          ........++.+.+||.+||+.||++|||+.|+++||||...
T Consensus       240 ----~~~~~~~~s~~~~~li~~~L~~dP~~Rps~~ell~hp~f~~~  281 (361)
T 3uc3_A          240 ----SIPDDIRISPECCHLISRIFVADPATRISIPEIKTHSWFLKN  281 (361)
T ss_dssp             ----CCCTTSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTSHHHHTT
T ss_pred             ----CCCCcCCCCHHHHHHHHHHccCChhHCcCHHHHHhCcchhcC
Confidence                001111346789999999999999999999999999999654

>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*

Probab=100.00  E-value=8.6e-36  Score=272.25  Aligned_cols=226  Identities=19%  Similarity=0.221  Sum_probs=177.1

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      +|..||+|++.... ......+.++.+....  ..|++++........ ....|+||||++||+|.+++.. ..+++.++
T Consensus        69 ~g~~vavK~~~~~~-~~~~~~~~~E~~~l~~--l~h~niv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~-~~l~~~~~  143 (321)
T 2c30_A           69 SGRQVAVKMMDLRK-QQRRELLFNEVVIMRD--YQHFNVVEMYKSYLV-GEELWVLMEFLQGGALTDIVSQ-VRLNEEQI  143 (321)
T ss_dssp             TCCEEEEEEEETTT-CCSHHHHHHHHHHHTT--CCCTTBCCEEEEEEE-TTEEEEEECCCCSCBHHHHHTT-CCCCHHHH
T ss_pred             CCcEEEEEEEeccc-hhHHHHHHHHHHHHHh--CCCCCcceEEEEEEE-CCEEEEEEecCCCCCHHHHHHh-cCCCHHHH
Confidence            68899999986543 3344556677666665  357777776655433 3568999999999999998865 45788999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   ....+||+.|+|||++.+..++.++|
T Consensus       144 ~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  223 (321)
T 2c30_A          144 ATVCEAVLQALAYLHAQGVIHRDIKSDSILLTLDGRVKLSDFGFCAQISKDVPKRKSLVGTPYWMAPEVISRSLYATEVD  223 (321)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSSSCCBCCCCSCGGGCCHHHHTTCCBCTHHH
T ss_pred             HHHHHHHHHHHHHHHHCCeecCCCCHHHEEECCCCcEEEeeeeeeeecccCccccccccCCccccCHhhhcCCCCCchhh
Confidence            9999999999999999999998    9999999999999999999765432   34568999999999999988999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|+.||.+..      ....+..+..   ..++                                   
T Consensus       224 v~slG~il~el~~g~~pf~~~~------~~~~~~~~~~---~~~~-----------------------------------  259 (321)
T 2c30_A          224 IWSLGIMVIEMVDGEPPYFSDS------PVQAMKRLRD---SPPP-----------------------------------  259 (321)
T ss_dssp             HHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH---SSCC-----------------------------------
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhc---CCCC-----------------------------------
Confidence            9999999999999999997543      2222222211   1100                                   


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       ........++.+.+||.+||+.||++|||+.|+|+||||...
T Consensus       260 -~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~~  301 (321)
T 2c30_A          260 -KLKNSHKVSPVLRDFLERMLVRDPQERATAQELLDHPFLLQT  301 (321)
T ss_dssp             -CCTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGGGC
T ss_pred             -CcCccccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhccC
Confidence             001122346788999999999999999999999999999853

>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}

Probab=100.00  E-value=9.7e-36  Score=272.43  Aligned_cols=224  Identities=15%  Similarity=0.154  Sum_probs=172.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC--------------------------------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK--------------------------------   67 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------   67 (358)
                      .+|..||+|++...-......++.++.+....+  .|++++.+.....                                
T Consensus        29 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (332)
T 3qd2_B           29 VDDCNYAIKRIRLPNRELAREKVMREVKALAKL--EHPGIVRYFNAWLETPPEKWQEEMDEIWLKDESTDWPLSSPSPMD  106 (332)
T ss_dssp             TTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSC--CCTTBCCEEEEEEECCSCHHHHHHHC-------------------
T ss_pred             CCCcEEEEEEeecCCchhHHHHHHHHHHHHHhC--CCCCEeeEEEEEEEeccchhhhhhhhhhhccccccccccCCCccc
Confidence            367889999998766677778888888888775  5777777654321                                


Q ss_pred             ------------------------CCCCCCCcccccCCCCCccccccccccc---ChhhhhHHHHhhhhccccccCCCCC
Q 045353           68 ------------------------PSSPDNFSVDTIPNGVSVEERQNDSVVN---NESSRDNEVKNTSQGVKGHRRPSRA  120 (358)
Q Consensus        68 ------------------------~~~~~~~iv~e~~~gg~L~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~h~~~~~  120 (358)
                                              ......|+|||||+||+|.+++......   .+..+..++.|++.|+.|+|+.+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~iv  186 (332)
T 3qd2_B          107 APSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSLEDREHGVCLHIFIQIAEAVEFLHSKGLM  186 (332)
T ss_dssp             -------------------------CCCEEEEEEECCCSSCHHHHHHTCCSGGGSCHHHHHHHHHHHHHHHHHHHHTTEE
T ss_pred             ccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCccchhhHHHHHHHHHHHHHHHHHHhCCee
Confidence                                    1123379999999999999998765433   3345788999999999999999999


Q ss_pred             Cc----ccccccCCCcEEEEecCCceecCCC---------------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHH
Q 045353          121 TR----KNLLAAVDVQCKLVDFGNACWTHKQ---------------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC  181 (358)
Q Consensus       121 hr----~NILl~~~~~vkL~DFG~a~~~~~~---------------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil  181 (358)
                      |+    +|||++.++.+||+|||+|......               ....+||+.|+|||++.+..++.++|||||||++
T Consensus       187 H~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il  266 (332)
T 3qd2_B          187 HRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVGTKLYMSPEQIHGNNYSHKVDIFSLGLIL  266 (332)
T ss_dssp             CCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-CGGGSCHHHHHCCCCCTHHHHHHHHHHH
T ss_pred             ecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCCCcCccChHHhcCCCCcchhhHHHHHHHH
Confidence            99    9999999999999999999765432               2345799999999999999999999999999999


Q ss_pred             HhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhC-CCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCCh
Q 045353          182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNE  260 (358)
Q Consensus       182 ~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (358)
                      |+|++|..|+.           .....+..... ..|.                                       ...
T Consensus       267 ~el~~~~~~~~-----------~~~~~~~~~~~~~~~~---------------------------------------~~~  296 (332)
T 3qd2_B          267 FELLYSFSTQM-----------ERVRIITDVRNLKFPL---------------------------------------LFT  296 (332)
T ss_dssp             HHHHSCCCCHH-----------HHHHHHHHHHTTCCCH---------------------------------------HHH
T ss_pred             HHHHHcCCChh-----------HHHHHHHHhhccCCCc---------------------------------------ccc
Confidence            99999876652           11111111111 1110                                       012


Q ss_pred             hhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          261 RDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       261 ~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ..++.+.+||.+||+.||++|||+.|+|+||||++
T Consensus       297 ~~~~~~~~li~~~l~~~p~~Rps~~~~l~~~~f~~  331 (332)
T 3qd2_B          297 QKYPQEHMMVQDMLSPSPTERPEATDIIENAIFEN  331 (332)
T ss_dssp             HHCHHHHHHHHHHHCSSGGGSCCHHHHHHSTTCCC
T ss_pred             cCChhHHHHHHHHccCCCCcCCCHHHHhhchhhhc
Confidence            23467789999999999999999999999999975

>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...

Probab=100.00  E-value=1.1e-35  Score=272.27  Aligned_cols=257  Identities=18%  Similarity=0.190  Sum_probs=185.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      ..+|..+|+|.+..    ..++++.++.+...++. ++++++.+....... ....++||||++|++|.+++..   +.+
T Consensus        58 ~~~~~~vavK~~~~----~~~~~~~~E~~~l~~l~-~~~~i~~~~~~~~~~~~~~~~lv~e~~~~~~l~~~~~~---~~~  129 (330)
T 3nsz_A           58 ITNNEKVVVKILKP----VKKKKIKREIKILENLR-GGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQT---LTD  129 (330)
T ss_dssp             TTTCCEEEEEEECS----CCHHHHHHHHHHHHHHT-TSTTBCCEEEEEECTTTCCEEEEEECCCCCCHHHHGGG---CCH
T ss_pred             CCCCcEEEEEEecc----cchHHHHHHHHHHHHcC-CCCCEEEeeeeeccCCCCceEEEEeccCchhHHHHHHh---CCH
Confidence            35677889998864    33566777777776653 466777766654432 4667999999999999998854   788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCC--CCCCCccCCCcchhHHHhC-CCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG-SKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~-~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++ .+||+|||+|.....  .....+||+.|+|||++.+ ..++
T Consensus       130 ~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  209 (330)
T 3nsz_A          130 YDIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYD  209 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEEcCCCCEEEEEeCCCceEcCCCCccccccccccccChhhhcCCCcCC
Confidence            8999999999999999999999999    999999776 899999999976543  3455689999999999988 5689


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhh--cCC-CCChhhhhccCCchhhhhccCC
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA--LGG-RYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++|||||||++|+|++|..||....     ...+.+..+...++.......  ... .....+......      ....
T Consensus       210 ~~~DiwslG~il~~ll~g~~p~~~~~-----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~  278 (330)
T 3nsz_A          210 YSLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGR------HSRK  278 (330)
T ss_dssp             THHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCTHHHHHHCC------CCCC
T ss_pred             chhhHHHHHHHHHHHHhCCCCcccCC-----chHHHHHHHHHhcCCchhhhHHHHhccccccchhhhhhh------cccc
Confidence            99999999999999999999995433     256777777777764322110  000 000000000000      0000


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ....  ......+...++.+.+||.+||++||++|||++|+|+||||++-
T Consensus       279 ~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~hp~f~~~  326 (330)
T 3nsz_A          279 RWER--FVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV  326 (330)
T ss_dssp             CGGG--GCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             chhh--hccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhcCccHhhh
Confidence            0000  00111223457889999999999999999999999999999863

>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A

Probab=100.00  E-value=9.3e-36  Score=271.97  Aligned_cols=229  Identities=18%  Similarity=0.225  Sum_probs=181.5

Q ss_pred             ccCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|.+.......     .+..+.++.+...++  .|++++........ ....|+||||++||+|.+++.....
T Consensus        35 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~  111 (321)
T 2a2a_A           35 STGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQV--LHHNVITLHDVYEN-RTDVVLILELVSGGELFDFLAQKES  111 (321)
T ss_dssp             TTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHTCSC
T ss_pred             CCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhC--CCCCcceEEEEEec-CCEEEEEEEcCCCCcHHHHHHhcCC
Confidence            357788999887655433     356677777776664  56777776655433 4568999999999999999988777


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----cEEEEecCCceecCCC--CCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----QCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~  164 (358)
                      +++..+..++.+++.++.++|+.+++|+    +|||++.++    .+||+|||++......  .....||+.|+|||++.
T Consensus       112 ~~~~~~~~i~~qi~~aL~~lH~~~ivH~dikp~NIl~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~  191 (321)
T 2a2a_A          112 LSEEEATSFIKQILDGVNYLHTKKIAHFDLKPENIMLLDKNIPIPHIKLIDFGLAHEIEDGVEFKNIFGTPEFVAPEIVN  191 (321)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCTTSSSCCEEECCCTTCEECCTTCCCCCCCSCGGGCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCChHHEEEecCCCCcCCEEEccCccceecCccccccccCCCCCccCccccc
Confidence            8899999999999999999999999998    999999887    7999999999776533  34568999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++|||||||++|+|++|..||.+.+      ..+.+..+.......+..                         
T Consensus       192 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~-------------------------  240 (321)
T 2a2a_A          192 YEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANITSVSYDFDEE-------------------------  240 (321)
T ss_dssp             TCCCCTHHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHTTCCCCCHH-------------------------
T ss_pred             CCCCCCccccHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhcccccChh-------------------------
Confidence            9899999999999999999999999997543      333333332211111110                         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                   .....+..+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       241 -------------~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~hp~~~~  278 (321)
T 2a2a_A          241 -------------FFSHTSELAKDFIRKLLVKETRKRLTIQEALRHPWITP  278 (321)
T ss_dssp             -------------HHTTCCHHHHHHHHTTSCSSTTTSCCHHHHHHSTTTSC
T ss_pred             -------------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhcCccccC
Confidence                         11234678899999999999999999999999999985

>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}

Probab=100.00  E-value=4.5e-36  Score=282.52  Aligned_cols=230  Identities=14%  Similarity=0.154  Sum_probs=174.9

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccC
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~   96 (358)
                      .+|..+|+|++....  .......++++......  ..+++++.+...... ...+|+|||||+||+|.+++... ..++
T Consensus        84 ~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~--~~hp~Iv~l~~~~~~-~~~~~lVmE~~~gg~L~~~l~~~~~~l~  160 (412)
T 2vd5_A           84 QTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVN--GDRRWITQLHFAFQD-ENYLYLVMEYYVGGDLLTLLSKFGERIP  160 (412)
T ss_dssp             TTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHH--SCTTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHSSCCC
T ss_pred             CCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHh--cCCCCeeeEEEEEee-CCEEEEEEcCCCCCcHHHHHHhcCCCCC
Confidence            467889999987532  22233445555555544  356777777665443 45789999999999999999764 3688


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHh----
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLL----  164 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~----  164 (358)
                      +..+..++.+++.|+.|+|+.+++||    +|||++.++++||+|||+|+.....    ....+||+.|+|||++.    
T Consensus       161 ~~~~~~~~~qi~~aL~~LH~~giiHrDLKp~NILld~~g~vkL~DFGla~~~~~~~~~~~~~~~Gt~~Y~APE~l~~~~~  240 (412)
T 2vd5_A          161 AEMARFYLAEIVMAIDSVHRLGYVHRDIKPDNILLDRCGHIRLADFGSCLKLRADGTVRSLVAVGTPDYLSPEILQAVGG  240 (412)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECCTTSCEECSSCCSCGGGCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeecccCHHHeeecCCCCEEEeechhheeccCCCccccceeccccCcCCHHHHhhccc
Confidence            89999999999999999999999999    9999999999999999999775432    23458999999999998    


Q ss_pred             ---CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          165 ---GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       165 ---~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                         +..|+.++|||||||++|+|++|++||.+.+      .......+........                        
T Consensus       241 ~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~~------------------------  290 (412)
T 2vd5_A          241 GPGTGSYGPECDWWALGVFAYEMFYGQTPFYADS------TAETYGKIVHYKEHLS------------------------  290 (412)
T ss_dssp             CTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTHHHHCC------------------------
T ss_pred             CcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCCC------HHHHHHHHHhcccCcC------------------------
Confidence               3458999999999999999999999997654      3333333321100000                        


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCC---CCHHHHhcCcCcCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR---PTAAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R---~ta~elL~hpwf~~~  296 (358)
                                   ....+..+++++.+||.+||+ +|.+|   ++++|+++||||++-
T Consensus       291 -------------~p~~~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~Hpff~~i  334 (412)
T 2vd5_A          291 -------------LPLVDEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRTHPFFFGL  334 (412)
T ss_dssp             -------------CC----CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHTSGGGTTC
T ss_pred             -------------CCccccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhcCCCcCCC
Confidence                         000123457889999999999 99998   599999999999874

>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=4.5e-36  Score=280.78  Aligned_cols=250  Identities=21%  Similarity=0.237  Sum_probs=185.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-------------------------------
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-------------------------------   67 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------   67 (358)
                      ..+|..||+|.+..+     .....++.+....  +.|++++.+.....                               
T Consensus        29 ~~~~~~vAiK~~~~~-----~~~~~~E~~il~~--l~hpnIv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (383)
T 3eb0_A           29 IESGKRFALKKVLQD-----PRYKNRELDIMKV--LDHVNIIKLVDYFYTTGDEEPKPPQPPDDHNKLGGKNNGVNNHHK  101 (383)
T ss_dssp             TTTCCEEEEEEEECC-----TTSCCHHHHHHTT--CCCTTBCCEEEEEEEC-----------------------------
T ss_pred             CCCCCEEEEEEEecC-----cchHHHHHHHHHH--cCCCCccchhheeeecCcccccccccccccccccccccccccccc
Confidence            357788999987543     2223456666555  35677776654321                               


Q ss_pred             ------CCCCCCCcccccCCCCCccccc----ccccccChhhhhHHHHhhhhccccccCCCCCCc----cccccc-CCCc
Q 045353           68 ------PSSPDNFSVDTIPNGVSVEERQ----NDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-VDVQ  132 (358)
Q Consensus        68 ------~~~~~~~iv~e~~~gg~L~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-~~~~  132 (358)
                            .....+|+|||||+| +|.+.+    .....+++..+..++.|++.|+.|+|+.+++||    +|||++ .++.
T Consensus       102 ~~~~~~~~~~~~~lv~e~~~~-~L~~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~gi~H~Dikp~Nil~~~~~~~  180 (383)
T 3eb0_A          102 SVIVNPSQNKYLNVIMEYVPD-TLHKVLKSFIRSGRSIPMNLISIYIYQLFRAVGFIHSLGICHRDIKPQNLLVNSKDNT  180 (383)
T ss_dssp             --------CCEEEEEECCCSE-EHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCCGGGEEEETTTTE
T ss_pred             cccccCCCceEEEEEEecCCc-cHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHCcCccCccCHHHEEEcCCCCc
Confidence                  223447899999996 655544    345678889999999999999999999999999    999998 6899


Q ss_pred             EEEEecCCceecC--CCCCCCccCCCcchhHHHhCCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHH
Q 045353          133 CKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALM  209 (358)
Q Consensus       133 vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i  209 (358)
                      +||+|||+|+...  ......+||+.|+|||++.+.. |+.++||||+||++|+|++|++||.+.+      ..+++..+
T Consensus       181 ~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~------~~~~~~~i  254 (383)
T 3eb0_A          181 LKLCDFGSAKKLIPSEPSVAYICSRFYRAPELMLGATEYTPSIDLWSIGCVFGELILGKPLFSGET------SIDQLVRI  254 (383)
T ss_dssp             EEECCCTTCEECCTTSCCCCCCCCSSCCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHH
T ss_pred             EEEEECCCCcccCCCCCCcCcccCCCccCHHHhcCCCCCCcchhhhhHHHHHHHHHhCCCCCCCCC------hHHHHHHH
Confidence            9999999998653  3345668999999999999865 8999999999999999999999998765      78899999


Q ss_pred             HHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          210 MELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       210 ~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      .+.+|.++..........         ....   .+ +..........++...++.+.+||.+||++||.+|||+.|+|+
T Consensus       255 ~~~~g~p~~~~~~~~~~~---------~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~  321 (383)
T 3eb0_A          255 IQIMGTPTKEQMIRMNPH---------YTEV---RF-PTLKAKDWRKILPEGTPSLAIDLLEQILRYEPDLRINPYEAMA  321 (383)
T ss_dssp             HHHHCCCCHHHHHHHCTT---------C--C---CC-CCCCCCCHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred             HHHhCCCCHHHHHHhCcc---------cccc---cC-CccCcccHHhhCCCCCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence            999999877644221110         0000   00 0000000011234556788999999999999999999999999


Q ss_pred             CcCcCC
Q 045353          290 HPWMSA  295 (358)
Q Consensus       290 hpwf~~  295 (358)
                      ||||+.
T Consensus       322 hp~f~~  327 (383)
T 3eb0_A          322 HPFFDH  327 (383)
T ss_dssp             SGGGHH
T ss_pred             CHHHHH
Confidence            999975

>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*

Probab=100.00  E-value=2.9e-36  Score=292.96  Aligned_cols=229  Identities=16%  Similarity=0.203  Sum_probs=179.4

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--cc
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~   95 (358)
                      .+|..+|+|.+......  .....+.++.+....  ..|++++.+...... ...+|+|||||+||+|.+++....  .+
T Consensus       207 ~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~--l~hp~Iv~l~~~~~~-~~~l~lVmEy~~gg~L~~~l~~~~~~~l  283 (576)
T 2acx_A          207 ATGKMYACKKLEKKRIKKRKGEAMALNEKQILEK--VNSRFVVSLAYAYET-KDALCLVLTLMNGGDLKFHIYHMGQAGF  283 (576)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH--CCCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHSSSSCCC
T ss_pred             CCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHH--cCCCCEeeEEEEEee-CCEEEEEEEcCCCCcHHHHHHhcCCCCC
Confidence            46888999998764322  233445556555555  367778777665443 457899999999999999887544  38


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....  .....+||+.|+|||++.+..|+
T Consensus       284 ~e~~~~~i~~qIl~aL~yLH~~gIvHrDLKPeNILld~~g~vKL~DFGla~~~~~~~~~~~~~GT~~Y~APEvl~~~~~~  363 (576)
T 2acx_A          284 PEARAVFYAAEICCGLEDLHRERIVYRDLKPENILLDDHGHIRISDLGLAVHVPEGQTIKGRVGTVGYMAPEVVKNERYT  363 (576)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCEECCCSCGGGCCHHHHTTCEES
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEeccCCchheEEEeCCCCeEEEecccceecccCccccccCCCccccCHHHHcCCCCC
Confidence            899999999999999999999999999    999999999999999999987643  23456999999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|.+||.+.....   ....+.....                                      
T Consensus       364 ~~~DiwSLGvilyeLltG~~PF~~~~~~~---~~~~i~~~i~--------------------------------------  402 (576)
T 2acx_A          364 FSPDWWALGCLLYEMIAGQSPFQQRKKKI---KREEVERLVK--------------------------------------  402 (576)
T ss_dssp             SHHHHHHHHHHHHHHHHSSCSSSCSSSCC---CHHHHHHHHH--------------------------------------
T ss_pred             ccchHHHHHHHHHHHHhCCCCCcccccch---hHHHHHHHhh--------------------------------------
Confidence            99999999999999999999997654221   1111111110                                      


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~  295 (358)
                         .....++..+++.+.+||.+||+.||.+||     |++|+++||||+.
T Consensus       403 ---~~~~~~p~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~HpfF~~  450 (576)
T 2acx_A          403 ---EVPEEYSERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKEHPLFKK  450 (576)
T ss_dssp             ---HCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHTSGGGTT
T ss_pred             ---cccccCCccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHhChhhcc
Confidence               011223445678999999999999999999     8999999999986

>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}

Probab=100.00  E-value=6.4e-36  Score=270.07  Aligned_cols=226  Identities=17%  Similarity=0.166  Sum_probs=171.4

Q ss_pred             ccCcccccccccCccchh-------------------------hhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCC
Q 045353           20 ESSASKENKSLYGDLTKN-------------------------QKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDN   73 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~   73 (358)
                      .+|..||+|++.......                         ...++.++.+...++  .|++++.+...... .....
T Consensus        36 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~  113 (298)
T 2zv2_A           36 NDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILKKL--DHPNVVKLVEVLDDPNEDHL  113 (298)
T ss_dssp             TTTEEEEEEEEECC-------------------------------CHHHHHHHHHHTC--CCTTBCCEEEEEECSSSSEE
T ss_pred             CCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHHhC--CCCCCCeEEEEEEcCCCCEE
Confidence            457788999886543221                         234566666666653  67778777766443 34678


Q ss_pred             CcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--
Q 045353           74 FSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--  147 (358)
Q Consensus        74 ~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--  147 (358)
                      |+||||++||+|.+++.. ..+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......  
T Consensus       114 ~lv~e~~~~~~l~~~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~  192 (298)
T 2zv2_A          114 YMVFELVNQGPVMEVPTL-KPLSEDQARFYFQDLIKGIEYLHYQKIIHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSDA  192 (298)
T ss_dssp             EEEEECCTTCBSCCSSCS-SCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECSSSSC
T ss_pred             EEEEecCCCCcHHHHhhc-CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEECCCCCEEEecCCCccccccccc
Confidence            999999999999987654 457889999999999999999999999998    9999999999999999999775432  


Q ss_pred             -CCCCccCCCcchhHHHhCCC---CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcC
Q 045353          148 -FTNDIQTRQYRCPEVLLGSK---YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG  223 (358)
Q Consensus       148 -~~~~~gt~~Y~aPE~l~~~~---~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~  223 (358)
                       ....+||+.|+|||++.+..   ++.++|||||||++|+|++|..||.+..      .......+.....         
T Consensus       193 ~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~---------  257 (298)
T 2zv2_A          193 LLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTLYCFVFGQCPFMDER------IMCLHSKIKSQAL---------  257 (298)
T ss_dssp             EECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCC---------
T ss_pred             cccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCcc------HHHHHHHHhcccC---------
Confidence             34568999999999998765   3788999999999999999999996432      1111111111000         


Q ss_pred             CCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          224 GRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                                     .+......++.+.+||.+||+.||++|||+.|+|+||||+
T Consensus       258 -------------------------------~~~~~~~~~~~l~~li~~~l~~dp~~R~s~~e~l~hp~~~  297 (298)
T 2zv2_A          258 -------------------------------EFPDQPDIAEDLKDLITRMLDKNPESRIVVPEIKLHPWVT  297 (298)
T ss_dssp             -------------------------------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTCHHHH
T ss_pred             -------------------------------CCCCccccCHHHHHHHHHHhhcChhhCCCHHHHhcCcccc
Confidence                                           0011223467899999999999999999999999999995

>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A

Probab=100.00  E-value=6.7e-36  Score=272.05  Aligned_cols=236  Identities=21%  Similarity=0.245  Sum_probs=172.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+.... .....++.++.+...+. ..|++++.+...... ....|+|||||+||+|.+++.....+++..
T Consensus        36 ~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~~-~~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  112 (316)
T 2ac3_A           36 ITSQEYAVKIIEKQP-GHIRSRVFREVEMLYQC-QGHRNVLELIEFFEE-EDRFYLVFEKMRGGSILSHIHKRRHFNELE  112 (316)
T ss_dssp             SSCCEEEEEEEECCS-SCCHHHHHHHHHHHHHT-CCCTTBCCEEEEEEE-TTEEEEEEECCTTCBHHHHHHHHSSCCHHH
T ss_pred             CCCcEEEEEEEeeCc-chhHHHHHHHHHHHHHh-cCCCCeeeEEEEEee-CCEEEEEEEcCCCCcHHHHHhccCCCCHHH
Confidence            467789999987653 34456666776666553 367777777665443 457899999999999999998777789999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecCC----------CCCCCccCCCcchhHH
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTHK----------QFTNDIQTRQYRCPEV  162 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~~----------~~~~~~gt~~Y~aPE~  162 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.   +||+|||++.....          .....+||+.|+|||+
T Consensus       113 ~~~i~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  192 (316)
T 2ac3_A          113 ASVVVQDVASALDFLHNKGIAHRDLKPENILCEHPNQVSPVKICDFDLGSGIKLNGDCSPISTPELLTPCGSAEYMAPEV  192 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEESCSSSSCSEEECCTTCCC-------------------CCSGGGCCHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCceeCCCCHHHEEEccCCCcCceEEEEccCccccccCCccccccccccccccCCcCccChHH
Confidence            99999999999999999999999    9999998776   99999999865421          1234479999999999


Q ss_pred             HhC-----CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcH-----HHHHHHHHHhCCCchhhhcCCCCChhhhh
Q 045353          163 LLG-----SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDE-----DHLALMMELLGMMPRKIALGGRYSRDFFN  232 (358)
Q Consensus       163 l~~-----~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~-----~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  232 (358)
                      +.+     ..|+.++|||||||++|+|++|..||.+..........     .....+..                     
T Consensus       193 ~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  251 (316)
T 2ac3_A          193 VEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGWDRGEACPACQNMLFE---------------------  251 (316)
T ss_dssp             HHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC----CCHHHHHHHHH---------------------
T ss_pred             hhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccccccccchhHHHHHHH---------------------
Confidence            986     45889999999999999999999999765432211000     00000000                     


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCC----hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFN----ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                       .+....+.++    ...+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       252 -----------------~i~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~~  302 (316)
T 2ac3_A          252 -----------------SIQEGKYEFPDKDWAHISCAAKDLISKLLVRDAKQRLSAAQVLQHPWVQGC  302 (316)
T ss_dssp             -----------------HHHHCCCCCCHHHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSTTCC--
T ss_pred             -----------------HHhccCcccCchhcccCCHHHHHHHHHHhhCChhhCCCHHHHhcChhhcCC
Confidence                             0000011111    2346789999999999999999999999999999864

>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*

Probab=100.00  E-value=7.5e-36  Score=279.78  Aligned_cols=235  Identities=17%  Similarity=0.208  Sum_probs=178.4

Q ss_pred             cccccccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc
Q 045353           15 DKVVTESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      -+.....|..+|+|.+... ........++++.+....+...+++++.+...... ...+|+||| +.+|+|.+++....
T Consensus        73 y~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~-~~~~~lv~E-~~~~~L~~~l~~~~  150 (390)
T 2zmd_A           73 FQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-DQYIYMVME-CGNIDLNSWLKKKK  150 (390)
T ss_dssp             EEEECTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-SSEEEEEEE-CCSEEHHHHHHHCS
T ss_pred             EEEEcCCCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEec-CCEEEEEEe-cCCCCHHHHHHhcC
Confidence            3344556788999988654 34555677888888777765446777777655443 345899999 78899999998777


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~  164 (358)
                      .+++.++..++.+++.++.|+|+.+++||    +|||++ ++.+||+|||+|+.....     ....+||+.|+|||++.
T Consensus       151 ~~~~~~~~~i~~qi~~aL~~lH~~~ivHrDlkp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  229 (390)
T 2zmd_A          151 SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGAVNYMPPEAIK  229 (390)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGEEES-SSCEEECCCSSSCCC---------CCSCCCGGGCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCeeecCCCHHHEEEE-CCeEEEEecCccccccCCCccccCCCCCcCCCccChHHhh
Confidence            78888999999999999999999999999    999995 589999999999765432     34568999999999998


Q ss_pred             C-----------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          165 G-----------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       165 ~-----------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +           ..|+.++|||||||++|+|++|..||.....     ...   .+..++....                
T Consensus       230 ~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~-----~~~---~~~~~~~~~~----------------  285 (390)
T 2zmd_A          230 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-----QIS---KLHAIIDPNH----------------  285 (390)
T ss_dssp             CC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC-----HHH---HHHHHHCTTS----------------
T ss_pred             hccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH-----HHH---HHHHHhCccc----------------
Confidence            6           3589999999999999999999999964321     111   1222221100                


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                           ...++...+..+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       286 ---------------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~~~~~~  328 (390)
T 2zmd_A          286 ---------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  328 (390)
T ss_dssp             ---------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             ---------------------cCCCCccchHHHHHHHHHHcccChhhCCCHHHHhhCcCccccC
Confidence                                 0112333357889999999999999999999999999998643

>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A

Probab=100.00  E-value=2.3e-36  Score=278.26  Aligned_cols=228  Identities=17%  Similarity=0.201  Sum_probs=173.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+.....     ...++.+..... ..|++++.+..... .....|+|||||+||+|.+++.....+++.+
T Consensus        45 ~~~~~~avK~~~~~~~-----~~~~E~~~l~~~-~~hp~iv~~~~~~~-~~~~~~lv~E~~~gg~L~~~i~~~~~~~~~~  117 (342)
T 2qr7_A           45 ATNMEFAVKIIDKSKR-----DPTEEIEILLRY-GQHPNIITLKDVYD-DGKYVYVVTELMKGGELLDKILRQKFFSERE  117 (342)
T ss_dssp             TTTEEEEEEEEETTTC-----CCHHHHHHHHHH-TTSTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHTCTTCCHHH
T ss_pred             CCCCEEEEEEEEcccC-----ChHHHHHHHHHh-cCCCCcCeEEEEEE-cCCEEEEEEeCCCCCcHHHHHHHcCCCCHHH
Confidence            3567889998865432     233344443333 36777877766554 3457899999999999999998888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCC----CcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD----VQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~----~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +..++.+++.++.|+|+.+++||    +|||+.++    +.+||+|||+|.....   .....+||+.|+|||++.+..|
T Consensus       118 ~~~~~~qi~~al~~lH~~givHrDlkp~NIl~~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  197 (342)
T 2qr7_A          118 ASAVLFTITKTVEYLHAQGVVHRDLKPSNILYVDESGNPESIRICDFGFAKQLRAENGLLMTPCYTANFVAPEVLERQGY  197 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSCSGGGEEECCCTTCEECBCTTCCBCCSSCCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCcEeccCCHHHEEEecCCCCcCeEEEEECCCcccCcCCCCceeccCCCccccCHHHhcCCCC
Confidence            99999999999999999999999    99998543    3599999999976532   2456689999999999998889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|.+||.+....   .....+..+....-..                                
T Consensus       198 ~~~~DiwslG~il~ell~g~~Pf~~~~~~---~~~~~~~~i~~~~~~~--------------------------------  242 (342)
T 2qr7_A          198 DAACDIWSLGVLLYTMLTGYTPFANGPDD---TPEEILARIGSGKFSL--------------------------------  242 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSSCSSTTS---CHHHHHHHHHHCCCCC--------------------------------
T ss_pred             CCccCeeeHhHHHHHHhcCCCCCCCCCcC---CHHHHHHHHccCCccc--------------------------------
Confidence            99999999999999999999999754321   1222222222100000                                


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            ....+...+..+.+||.+||..||++|||+.++|+||||..
T Consensus       243 ------~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~il~hp~~~~  283 (342)
T 2qr7_A          243 ------SGGYWNSVSDTAKDLVSKMLHVDPHQRLTAALVLRHPWIVH  283 (342)
T ss_dssp             ------CSTTTTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHT
T ss_pred             ------CccccccCCHHHHHHHHHHCCCChhHCcCHHHHhcCCeecC
Confidence                  00112345788999999999999999999999999999975

>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}

Probab=100.00  E-value=1.6e-35  Score=277.99  Aligned_cols=251  Identities=22%  Similarity=0.251  Sum_probs=182.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-----CCCCCCCcccccCCCCCccccc---ccc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-----PSSPDNFSVDTIPNGVSVEERQ---NDS   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~iv~e~~~gg~L~~~~---~~~   92 (358)
                      .+..+|+|.....     +....++.+....  +.|++++.+.....     .....+|+|||||+++.+....   ...
T Consensus        63 ~~~~~aikk~~~~-----~~~~~~E~~il~~--l~h~niv~l~~~~~~~~~~~~~~~~~lv~e~~~~~l~~~~~~~~~~~  135 (394)
T 4e7w_A           63 ESDEVAIKKVLQD-----KRFKNRELQIMRI--VKHPNVVDLKAFFYSNGDKKDEVFLNLVLEYVPETVYRASRHYAKLK  135 (394)
T ss_dssp             TTEEEEEEEEECC-----TTSCCHHHHHHHT--CCCTTBCCEEEEEEEESSSSSCEEEEEEEECCSEEHHHHHHHHHHTT
T ss_pred             CCCeEEEEEEecC-----cchHHHHHHHHHh--CCCCCcceEEEEEEecCCCCCceEEEEEeeccCccHHHHHHHHHhhc
Confidence            3344666655432     1222355555555  35777777655432     2223378999999997655433   234


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----cccccc-CCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-VDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..+++..+..++.|++.|+.|+|+.+++||    +|||++ .++.+||+|||+|+...  ......+||+.|+|||++.+
T Consensus       136 ~~~~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~Nill~~~~~~~kL~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~  215 (394)
T 4e7w_A          136 QTMPMLLIKLYMYQLLRSLAYIHSIGICHRDIKPQNLLLDPPSGVLKLIDFGSAKILIAGEPNVSYICSRYYRAPELIFG  215 (394)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSSCSCGGGCCHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCccCCCCCHHHEEEcCCCCcEEEeeCCCcccccCCCCCcccccCcCccCHHHHcC
Confidence            567888999999999999999999999999    999999 78999999999997653  33456689999999999988


Q ss_pred             CC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      .. |+.++||||+||++|+|++|++||.+.+      ..+++..+.+.+|.++..........   +...    ......
T Consensus       216 ~~~~~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~l~~i~~~~g~p~~~~~~~~~~~---~~~~----~~~~~~  282 (394)
T 4e7w_A          216 ATNYTTNIDIWSTGCVMAELMQGQPLFPGES------GIDQLVEIIKVLGTPSREQIKTMNPN---YMEH----KFPQIR  282 (394)
T ss_dssp             CSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCGG---GSSS----CCCCCC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhChh---hhhh----cccccc
Confidence            64 8999999999999999999999998765      67889999999999887643211100   0000    000000


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ..+      ....++...++++.+||.+||++||.+|||+.|+|+||||+...
T Consensus       283 ~~~------~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~hp~f~~~~  329 (394)
T 4e7w_A          283 PHP------FSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALCHPFFDELR  329 (394)
T ss_dssp             CCC------HHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGSTTT
T ss_pred             CCc------HHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhcChhhhhhc
Confidence            000      01123344678999999999999999999999999999998753

>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B

Probab=100.00  E-value=9e-36  Score=288.61  Aligned_cols=229  Identities=17%  Similarity=0.168  Sum_probs=178.7

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----c
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----V   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----~   93 (358)
                      .+|..+|+|++.......  ....+.++.+....  ..+++++.+...... ...+|+|||||+||+|.+++...    .
T Consensus       208 ~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~--l~hp~Iv~l~~~~~~-~~~l~lVmE~~~gg~L~~~l~~~~~~~~  284 (543)
T 3c4z_A          208 ATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAK--VHSRFIVSLAYAFET-KTDLCLVMTIMNGGDIRYHIYNVDEDNP  284 (543)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH--CCCTTBCCEEEEEEC-SSEEEEEECCCTTCBHHHHHHTSSTTSC
T ss_pred             CCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHh--cCCCCEeeEEEEEee-CCEEEEEEEeccCCCHHHHHHHhhcccc
Confidence            468889999987654332  23455566665555  367777777665443 45689999999999999887653    3


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+++..+..++.+++.|+.|+|+.+++||    +|||++.+|.+||+|||+|+.....   ....+||+.|+|||++.+.
T Consensus       285 ~l~e~~~~~~~~qi~~aL~~LH~~gIvHrDLKP~NILl~~~g~vkL~DFGla~~~~~~~~~~~~~~GT~~Y~APE~l~~~  364 (543)
T 3c4z_A          285 GFQEPRAIFYTAQIVSGLEHLHQRNIIYRDLKPENVLLDDDGNVRISDLGLAVELKAGQTKTKGYAGTPGFMAPELLLGE  364 (543)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCTTCCCBCCCCSCTTTSCHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHcCCcccCCChHHEEEeCCCCEEEeecceeeeccCCCcccccccCCccccChhhhcCC
Confidence            58889999999999999999999999999    9999999999999999999875432   2345899999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .|+.++|||||||++|+|++|.+||.+.+...  ........+.                                    
T Consensus       365 ~~~~~~DiwSlGvilyelltG~~PF~~~~~~~--~~~~~~~~i~------------------------------------  406 (543)
T 3c4z_A          365 EYDFSVDYFALGVTLYEMIAARGPFRARGEKV--ENKELKQRVL------------------------------------  406 (543)
T ss_dssp             CBCTHHHHHHHHHHHHHHHHSSCSSCCTTCCC--CHHHHHHHHH------------------------------------
T ss_pred             CCChHHhcCcchHHHHHHHhCCCCCCCCccch--hHHHHHHHHh------------------------------------
Confidence            99999999999999999999999997654211  0111111111                                    


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~  295 (358)
                            .....++..+++.+.+||.+||+.||++||+     ++++++||||+.
T Consensus       407 ------~~~~~~p~~~s~~~~~li~~lL~~dP~~R~~~~~~~a~ei~~Hpff~~  454 (543)
T 3c4z_A          407 ------EQAVTYPDKFSPASKDFCEALLQKDPEKRLGFRDGSCDGLRTHPLFRD  454 (543)
T ss_dssp             ------HCCCCCCTTSCHHHHHHHHHHSCSSGGGSCCCBTTBSHHHHTSGGGTT
T ss_pred             ------hcccCCCcccCHHHHHHHHHhccCCHhHCCCCcccCHHHHHcCccccC
Confidence                  1122344556789999999999999999996     589999999986

>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A

Probab=100.00  E-value=2.6e-35  Score=273.83  Aligned_cols=229  Identities=21%  Similarity=0.252  Sum_probs=175.3

Q ss_pred             ccCcccccccccCccch---h----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           20 ESSASKENKSLYGDLTK---N----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      .+|..||+|++......   .    .+..++++.....++ ..+++++....... .....|+||||++||+|.+++...
T Consensus       117 ~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~hp~iv~~~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~  194 (365)
T 2y7j_A          117 ATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQV-AGHPHIITLIDSYE-SSSFMFLVFDLMRKGELFDYLTEK  194 (365)
T ss_dssp             TTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHH-TTCTTBCCEEEEEE-BSSEEEEEECCCTTCBHHHHHHHH
T ss_pred             CCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHh-cCCCCEeEEEEEEe-eCCEEEEEEEeCCCCcHHHHHHhc
Confidence            36889999988765422   2    234455555555443 25667776655443 346789999999999999999877


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ..+++..+..++.+++.++.++|+.|++|+    +|||++.++.+||+|||++.....  .....+||+.|+|||++.+.
T Consensus       195 ~~l~~~~~~~i~~qi~~~L~~LH~~gi~H~Dlkp~NIl~~~~~~ikl~DfG~~~~~~~~~~~~~~~gt~~y~aPE~~~~~  274 (365)
T 2y7j_A          195 VALSEKETRSIMRSLLEAVSFLHANNIVHRDLKPENILLDDNMQIRLSDFGFSCHLEPGEKLRELCGTPGYLAPEILKCS  274 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEECCCCCEEEEecCcccccCCCcccccCCCCCCccChhhcccc
Confidence            778999999999999999999999999988    999999999999999999976543  34566899999999999743


Q ss_pred             ------CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          167 ------KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       167 ------~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                            .|+.++|||||||++|+|++|..||.+..      ....+..+.......+..                     
T Consensus       275 ~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~---------------------  327 (365)
T 2y7j_A          275 MDETHPGYGKEVDLWACGVILFTLLAGSPPFWHRR------QILMLRMIMEGQYQFSSP---------------------  327 (365)
T ss_dssp             TCTTSCCBCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCHH---------------------
T ss_pred             ccccCcCCCchhhHHhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCCc---------------------
Confidence                  58899999999999999999999996543      233333322211111000                     


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                       .+...+..+.+||.+||+.||++|||+.|+|+||||+
T Consensus       328 -----------------~~~~~~~~~~~li~~~L~~dP~~Rps~~ell~hp~f~  364 (365)
T 2y7j_A          328 -----------------EWDDRSSTVKDLISRLLQVDPEARLTAEQALQHPFFE  364 (365)
T ss_dssp             -----------------HHSSSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGC
T ss_pred             -----------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCcccC
Confidence                             0112356789999999999999999999999999997

>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*

Probab=100.00  E-value=2.7e-35  Score=263.89  Aligned_cols=231  Identities=19%  Similarity=0.226  Sum_probs=181.1

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|.+... .+.....++.++.+...++  .+++++.+..... .....|+||||+.||+|.+.+.....+++.
T Consensus        29 ~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~l~~~~~~~~~~~~~  105 (284)
T 3kk8_A           29 TTGLEFAAKIINTKKLSARDFQKLEREARICRKL--QHPNIVRLHDSIQ-EESFHYLVFDLVTGGELFEDIVAREFYSEA  105 (284)
T ss_dssp             TTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHHHSSCCHH
T ss_pred             CCCceEEEEEeecccCCHHHHHHHHHHHHHHHHc--CCCCcCeEEEEEE-cCCEEEEEEecCCCCCHHHHHHhcCCCCHH
Confidence            45778999988764 3455556777777766664  5777777766543 345679999999999999988877788999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.   +||+|||++......  .....||+.|+|||++.+..++
T Consensus       106 ~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  185 (284)
T 3kk8_A          106 DASHCIQQILESIAYCHSNGIVHRNLKPENLLLASKAKGAAVKLADFGLAIEVNDSEAWHGFAGTPGYLSPEVLKKDPYS  185 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEESSSSTTCCEEECCCTTCEECCSSCBCCCSCSCGGGCCHHHHTTCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHCCcCcCCCCHHHEEEecCCCCCcEEEeeceeeEEcccCccccCCCCCcCCcCchhhcCCCCC
Confidence            999999999999999999999999    9999987655   999999999766533  3456899999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+..      .......+.......|.                               
T Consensus       186 ~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~-------------------------------  228 (284)
T 3kk8_A          186 KPVDIWACGVILYILLVGYPPFWDED------QHRLYAQIKAGAYDYPS-------------------------------  228 (284)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCT-------------------------------
T ss_pred             cccchHHHHHHHHHHHHCCCCCCCCc------hhHHHHHHHhccccCCc-------------------------------
Confidence            99999999999999999999996543      22333222211111110                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                             ......++.+.+||.+||+.||++|||+.|+|+||||....
T Consensus       229 -------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~  269 (284)
T 3kk8_A          229 -------PEWDTVTPEAKSLIDSMLTVNPKKRITADQALKVPWICNRE  269 (284)
T ss_dssp             -------TTTTTSCHHHHHHHHHHSCSSTTTSCCHHHHTTSHHHHSCC
T ss_pred             -------hhhcccCHHHHHHHHHHcccChhhCCCHHHHhcCccccCCh
Confidence                   11123467899999999999999999999999999998753

>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...

Probab=100.00  E-value=2.6e-36  Score=279.96  Aligned_cols=262  Identities=19%  Similarity=0.172  Sum_probs=181.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+..........++.++.+....+  .|++++.+..... .....|+||||++||+|.+++.....+++..
T Consensus        56 ~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  132 (360)
T 3eqc_A           56 PSGLVMARKLIHLEIKPAIRNQIIRELQVLHEC--NSPYIVGFYGAFY-SDGEISICMEHMDGGSLDQVLKKAGRIPEQI  132 (360)
T ss_dssp             TTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGC--CCTTBCCEEEEEE-ETTEEEEEECCCTTCBHHHHHHHHSSCCHHH
T ss_pred             CCCcEEEEEEeccccCHHHHHHHHHHHHHHHHC--CCCCEEEEeEEEE-ECCEEEEEEECCCCCCHHHHHHHcCCCCHHH
Confidence            357789999998887777777888887766663  6777777766543 3456899999999999999998877888999


Q ss_pred             hhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecC-CCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTH-KQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~-~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.+++.++.++|+. +++|+    +|||++.++.+||+|||+|.... ......+||+.|+|||++.+..++.++|
T Consensus       133 ~~~i~~~i~~~l~~lh~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~D  212 (360)
T 3eqc_A          133 LGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSD  212 (360)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHC----CCCCTTCCHHHHTTCCCSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEcCCccHHHEEECCCCCEEEEECCCCcccccccccCCCCCCCeECHHHHcCCCCCchhh
Confidence            999999999999999985 89998    99999999999999999996543 2334568999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH--HhCCCchhhh---cCCCCChhhhhccCCchhhhhccCCcc
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME--LLGMMPRKIA---LGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~--~~g~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ||||||++|+|++|..||....       ...+..+..  ..+..+....   ........+.............    .
T Consensus       213 i~slG~il~~l~~g~~pf~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~  281 (360)
T 3eqc_A          213 IWSMGLSLVEMAVGRYPIPPPD-------AKELELMFGCQVEGDAAETPPRPRTPGRPLNKFGMDSRPPMAIFEL----L  281 (360)
T ss_dssp             HHHHHHHHHHHHHTSCCSSCCC-------HHHHHHHHC------------------------------CCCHHHH----H
T ss_pred             HHHHHHHHHHHHhCCCCCCCCC-------HHHHHHHhcccccccCCCCCCCcccCCCcccccccCCCCcccchhh----h
Confidence            9999999999999999997543       222222211  1111111000   0000000000000000000000    0


Q ss_pred             hhhHHhhh--cCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          249 NKVLVEKY--DFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~--~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ........  ......+..+.+||.+||++||++|||++|+|+||||+.
T Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~  330 (360)
T 3eqc_A          282 DYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  330 (360)
T ss_dssp             HHHHHSCCCCCCTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHH
T ss_pred             hHHhccCCCCCCcccccHHHHHHHHHHhhcChhhCCCHHHHhhChHhhc
Confidence            00000000  112235778999999999999999999999999999985

>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A

Probab=100.00  E-value=7.7e-37  Score=285.37  Aligned_cols=222  Identities=11%  Similarity=0.062  Sum_probs=167.5

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhc-cCCCccccccC-------CCCCC-----------C-----CCC
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGC-AGTEAFDESEA-------DSKPS-----------S-----PDN   73 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-------~~~~~-----------~-----~~~   73 (358)
                      .+|..||+|++....  .....+.++++.+....+. ..|++++....       .....           .     ...
T Consensus        96 ~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  175 (377)
T 3byv_A           96 ETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSR  175 (377)
T ss_dssp             CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEEEECTTSCSEEEC------CEEESE
T ss_pred             CCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhhhhccCCccccccccCCCceEEEEE
Confidence            568899999987542  3334566777764433322 35666665441       11111           1     137


Q ss_pred             CcccccCCCCCcccccccccccCh-------hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCce
Q 045353           74 FSVDTIPNGVSVEERQNDSVVNNE-------SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus        74 ~iv~e~~~gg~L~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~  142 (358)
                      |+||||| +|+|.+++.....+.+       ..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+
T Consensus       176 ~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~  254 (377)
T 3byv_A          176 FFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHLV  254 (377)
T ss_dssp             EEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGCE
T ss_pred             EEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEcCCCCEEEEechhhe
Confidence            8999999 6899999886554554       6777899999999999999999999    99999999999999999998


Q ss_pred             ecCCCCCCCccCCCcchhHHHhCC-----------CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH
Q 045353          143 WTHKQFTNDIQTRQYRCPEVLLGS-----------KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME  211 (358)
Q Consensus       143 ~~~~~~~~~~gt~~Y~aPE~l~~~-----------~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~  211 (358)
                      .........+| +.|+|||++.+.           .|+.++|||||||++|+|++|+.||.+......            
T Consensus       255 ~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DvwSlG~il~elltg~~Pf~~~~~~~~------------  321 (377)
T 3byv_A          255 RDGARVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFDAWALGLVIYWIWCADLPITKDAALGG------------  321 (377)
T ss_dssp             ETTCEEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHHHHHHHHHHHHHHHSSCCC------CC------------
T ss_pred             ecCCcccCCCC-cCccChhhhcccccccccccccccCChhhhHHHHHHHHHHHHHCCCCCcccccccc------------
Confidence            87766677788 999999999987           799999999999999999999999964431110            


Q ss_pred             HhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          212 LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       212 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                                               ..           .    .......+++.+.+||.+||+.||++|||+.|+|+||
T Consensus       322 -------------------------~~-----------~----~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~hp  361 (377)
T 3byv_A          322 -------------------------SE-----------W----IFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETP  361 (377)
T ss_dssp             -------------------------SG-----------G----GGSSCCCCCHHHHHHHHHHTCSSGGGCCCHHHHHTSH
T ss_pred             -------------------------hh-----------h----hhhhccCCCHHHHHHHHHHcCCCchhCCCHHHHhhCh
Confidence                                     00           0    0011134467899999999999999999999999999


Q ss_pred             CcCC
Q 045353          292 WMSA  295 (358)
Q Consensus       292 wf~~  295 (358)
                      ||+.
T Consensus       362 ~f~~  365 (377)
T 3byv_A          362 EYEQ  365 (377)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*

Probab=100.00  E-value=6.8e-36  Score=287.95  Aligned_cols=229  Identities=19%  Similarity=0.244  Sum_probs=182.3

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  ......+.++.+...++  .|++++.+...... ....|+|||||.||+|.+++.....+++
T Consensus        49 ~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~  125 (484)
T 3nyv_A           49 ITGQECAVKVISKRQVKQKTDKESLLREVQLLKQL--DHPNIMKLYEFFED-KGYFYLVGEVYTGGELFDEIISRKRFSE  125 (484)
T ss_dssp             TTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHTCSCCBH
T ss_pred             CCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhC--CCCCCCcEEEEEEe-CCEEEEEEecCCCCCHHHHHHhcCCCCH
Confidence            4677899999865543  34566777887777664  67888877765543 5678999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .++..++.+++.++.|+|+.+++||    +|||+   +.++.+||+|||+|......  ....+||+.|+|||++.+ .|
T Consensus       126 ~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~  204 (484)
T 3nyv_A          126 VDAARIIRQVLSGITYMHKNKIVHRDLKPENLLLESKSKDANIRIIDFGLSTHFEASKKMKDKIGTAYYIAPEVLHG-TY  204 (484)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCTTHHHHBCCCCSHHHHTTGGGTCCHHHHHT-CC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeCCCCHHHEEEecCCCCCcEEEEeeeeeEEcccccccccCCCCccccCceeecC-CC
Confidence            9999999999999999999999999    99999   56789999999999765432  334589999999999987 69


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|.+||.+.+      ..+.+..+.......+                               
T Consensus       205 ~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~-------------------------------  247 (484)
T 3nyv_A          205 DEKCDVWSTGVILYILLSGCPPFNGAN------EYDILKKVEKGKYTFE-------------------------------  247 (484)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCC-------------------------------
T ss_pred             CCcceeHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHcCCCCCC-------------------------------
Confidence            999999999999999999999997654      3333333322111100                               


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ...+...++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       248 -------~~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h~~~~~~  288 (484)
T 3nyv_A          248 -------LPQWKKVSESAKDLIRKMLTYVPSMRISARDALDHEWIQTY  288 (484)
T ss_dssp             -------SGGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTSHHHHHH
T ss_pred             -------CcccccCCHHHHHHHHHHCCCChhHCcCHHHHhhChhhccc
Confidence                   01123457789999999999999999999999999999853

>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*

Probab=100.00  E-value=1.4e-36  Score=282.94  Aligned_cols=236  Identities=9%  Similarity=-0.010  Sum_probs=164.0

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCC----------CC-------------CCCCCC
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADS----------KP-------------SSPDNF   74 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-------------~~~~~~   74 (358)
                      .+|..+|+|++.....  ......++++++....+...|++++......          ..             .....|
T Consensus        85 ~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (371)
T 3q60_A           85 ERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAVAVQSQPPFAQLSPGQDDYAVANYL  164 (371)
T ss_dssp             TTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEEEETTSCSSSBCSCC---CCEEEEE
T ss_pred             CCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehheecCCCCCeeeccCCcccceeeeEE
Confidence            4677899999988663  4455666666554444432355533311110          00             013379


Q ss_pred             cccccCCCCCcccccccccccChhh-h------hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCcee
Q 045353           75 SVDTIPNGVSVEERQNDSVVNNESS-R------DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus        75 iv~e~~~gg~L~~~~~~~~~~~~~~-~------~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~  143 (358)
                      +|||||+ |+|.+++.......... .      ..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.
T Consensus       165 lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~vk~~i~~qi~~aL~~LH~~~ivHrDikp~NIll~~~~~~kL~DFG~a~~  243 (371)
T 3q60_A          165 LLMPAAS-VDLELLFSTLDFVYVFRGDEGILALHILTAQLIRLAANLQSKGLVHGHFTPDNLFIMPDGRLMLGDVSALWK  243 (371)
T ss_dssp             EEECCCS-EEHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEECTTSCEEECCGGGEEE
T ss_pred             EEecCCC-CCHHHHHHHhccccchhhhhhhhhHHHHHHHHHHHHHHHHHCCCccCcCCHHHEEECCCCCEEEEecceeee
Confidence            9999999 89999988643322333 3      4556999999999999999999    999999999999999999988


Q ss_pred             cCCCCCCCccCCCcchhHHHhC--CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhh
Q 045353          144 THKQFTNDIQTRQYRCPEVLLG--SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIA  221 (358)
Q Consensus       144 ~~~~~~~~~gt~~Y~aPE~l~~--~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~  221 (358)
                      .........||+.|+|||++.+  ..|+.++|||||||++|+|++|+.||.+.......                     
T Consensus       244 ~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~~~~~---------------------  302 (371)
T 3q60_A          244 VGTRGPASSVPVTYAPREFLNASTATFTHALNAWQLGLSIYRVWCLFLPFGLVTPGIKG---------------------  302 (371)
T ss_dssp             TTCEEEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHHHHHHHHHHSSCSTTBCCTTCTT---------------------
T ss_pred             cCCCccCccCCcCCcChhhccCCCCCcCccccHHHHHHHHHHHHhCCCCCCCcCccccc---------------------
Confidence            7665545677899999999987  56999999999999999999999999755321100                     


Q ss_pred             cCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          222 LGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                              .+...   ....       .......+......++.+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       303 --------~~~~~---~~~~-------~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~f~~  358 (371)
T 3q60_A          303 --------SWKRP---SLRV-------PGTDSLAFGSCTPLPDFVKTLIGRFLNFDRRRRLLPLEAMETPEFLQ  358 (371)
T ss_dssp             --------CCCBC---CTTS-------CCCCSCCCTTSSCCCHHHHHHHHHHTCSSTTTCCCHHHHTTSHHHHH
T ss_pred             --------chhhh---hhhh-------ccccccchhhccCCCHHHHHHHHHHcCCChhhCCCHHHHhcCHHHHH
Confidence                    00000   0000       00000011122355788999999999999999999999999999974

>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.2e-35  Score=273.69  Aligned_cols=235  Identities=18%  Similarity=0.222  Sum_probs=176.7

Q ss_pred             cccccccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc
Q 045353           15 DKVVTESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      -+....+|..+|+|.+... ........++++.+....+...+++++.+..... .....|+||| +.+|+|.+++....
T Consensus        26 y~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~-~~~~~~lv~e-~~~~~L~~~l~~~~  103 (343)
T 3dbq_A           26 FQVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEI-TDQYIYMVME-CGNIDLNSWLKKKK  103 (343)
T ss_dssp             EEEECTTSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEE-CSSEEEEEEC-CCSEEHHHHHHHSC
T ss_pred             EEEEeCCCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEe-eCCEEEEEEe-CCCCCHHHHHHhcC
Confidence            3444566788999988654 3444557778888777776544467777766544 3457899999 67889999998888


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~  164 (358)
                      .+++.++..++.+++.|+.|+|+.+++||    +|||++ ++.+||+|||+|......     ....+||+.|+|||++.
T Consensus       104 ~~~~~~~~~i~~qi~~al~~lH~~~iiHrDikp~NIll~-~~~~kl~DFG~a~~~~~~~~~~~~~~~~gt~~y~aPE~~~  182 (343)
T 3dbq_A          104 SIDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIK  182 (343)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCCC------------CCCCSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEEE-CCcEEEeecccccccCcccccccCCCCcCCcCcCCHHHHh
Confidence            88999999999999999999999999999    999997 688999999999765432     23458999999999997


Q ss_pred             C-----------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          165 G-----------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       165 ~-----------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +           ..|+.++|||||||++|+|++|+.||.....        ....+..+.....                
T Consensus       183 ~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~--------~~~~~~~~~~~~~----------------  238 (343)
T 3dbq_A          183 DMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN--------QISKLHAIIDPNH----------------  238 (343)
T ss_dssp             HCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCCS--------HHHHHHHHHCTTS----------------
T ss_pred             hccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhhh--------HHHHHHHHhcCCc----------------
Confidence            5           5689999999999999999999999964321        1112222211100                


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                           ...++...+..+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       239 ---------------------~~~~~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~hp~~~~~~  281 (343)
T 3dbq_A          239 ---------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  281 (343)
T ss_dssp             ---------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHSCC
T ss_pred             ---------------------ccCCcccCCHHHHHHHHHHcCCChhHCCCHHHHHhCccccccC
Confidence                                 1122333457889999999999999999999999999998643

>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A

Probab=100.00  E-value=1.2e-35  Score=281.11  Aligned_cols=230  Identities=16%  Similarity=0.174  Sum_probs=167.4

Q ss_pred             cccCcccccccccCccc-------hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           19 TESSASKENKSLYGDLT-------KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      ..+|..+|+|.+.....       ......+.++.+...++  .|++++.+.....  ....|+|||||+||+|.+++..
T Consensus       157 ~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~l~~~~~--~~~~~lv~e~~~~g~L~~~l~~  232 (419)
T 3i6u_A          157 RKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKL--NHPCIIKIKNFFD--AEDYYIVLELMEGGELFDKVVG  232 (419)
T ss_dssp             TTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHC--CCTTBCCCCEEEE--SSEEEEEEECCTTCBGGGGTSS
T ss_pred             CCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhC--CCCCEeeEEEEEe--cCceEEEEEcCCCCcHHHHHhc
Confidence            34567889998875431       22233466676666664  6778887766543  3457999999999999999988


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC--CCCCccCCCcchhHH
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEV  162 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~  162 (358)
                      ...+++.++..++.|++.|+.|+|+.+++||    +|||++.+   +.+||+|||+|+.....  ....+||+.|+|||+
T Consensus       233 ~~~~~~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~NIll~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~  312 (419)
T 3i6u_A          233 NKRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEV  312 (419)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSSSCCEEECCSSTTTSCC-----------CTTCCTTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCCCcceEEEeecccceecCCCccccccCCCCCccCcee
Confidence            8889999999999999999999999999999    99999754   45999999999776533  345689999999999


Q ss_pred             HhC---CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          163 LLG---SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       163 l~~---~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      +.+   ..|+.++|||||||++|+|++|.+||........     ....+.......++                     
T Consensus       313 ~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~~~~~-----~~~~i~~~~~~~~~---------------------  366 (419)
T 3i6u_A          313 LVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQVS-----LKDQITSGKYNFIP---------------------  366 (419)
T ss_dssp             TC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCSSSCC-----HHHHHHTTCCCCCH---------------------
T ss_pred             eecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCcchHH-----HHHHHhcCCCCCCc---------------------
Confidence            864   4588999999999999999999999975432110     11111000000000                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                       ......+..+.+||.+||+.||++|||++|+|+||||+.
T Consensus       367 -----------------~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~~~~  405 (419)
T 3i6u_A          367 -----------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  405 (419)
T ss_dssp             -----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGCC
T ss_pred             -----------------hhhcccCHHHHHHHHHHccCChhHCcCHHHHhCCcccCC
Confidence                             011234678999999999999999999999999999985

>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}

Probab=100.00  E-value=1.4e-35  Score=270.46  Aligned_cols=252  Identities=17%  Similarity=0.144  Sum_probs=185.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccc---c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVV---N   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~---~   95 (358)
                      .+|..||+|++...........+.++.+....+  .+++++.+....... ....|+||||++||+|.+++.....   +
T Consensus        32 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  109 (319)
T 4euu_A           32 KTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL--NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGL  109 (319)
T ss_dssp             TTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC--CCTTBCCEEEEEECTTTCCEEEEEECCTTCBHHHHHHSGGGTTCC
T ss_pred             CCCcEEEEEEeccccccchHHHHHHHHHHHHhc--CCCCcceEEEEeecCCCceEEEEEeCCCCCCHHHHHHHhccccCC
Confidence            357789999998776666677777777777664  577888777654333 3467999999999999999876543   7


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccc----cCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHh-
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA----AVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLL-  164 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl----~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~-  164 (358)
                      ++.++..++.+++.++.|+|+.+++|+    +|||+    +.++.+||+|||+|+....  .....+||+.|+|||++. 
T Consensus       110 ~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~  189 (319)
T 4euu_A          110 PESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYER  189 (319)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEECTTSCEEEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEEeccCCCCceEEEccCCCceecCCCCceeecccCCCccCHHHhhh
Confidence            889999999999999999999999999    99999    7888899999999987543  344568999999999997 


Q ss_pred             -------CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          165 -------GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       165 -------~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                             +..++.++|||||||++|+|++|..||.+....     ......+..++...|...+.......     ....
T Consensus       190 ~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~  259 (319)
T 4euu_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP-----RRNKEVMYKIITGKPSGAISGVQKAE-----NGPI  259 (319)
T ss_dssp             HTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCG-----GGCHHHHHHHHHHCCTTCCEEEECST-----TCCE
T ss_pred             ccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc-----chhHHHHHHHhcCCCcccchhhhccc-----CCcc
Confidence                   467899999999999999999999999755431     22233334444333322211100000     0000


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                      ...         ........+....+..+.+||.+||++||++|||++|+|+||=
T Consensus       260 ~~~---------~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~  305 (319)
T 4euu_A          260 DWS---------GDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETS  305 (319)
T ss_dssp             EEE---------SSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHH
T ss_pred             ccC---------ccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccH
Confidence            000         0000112345667889999999999999999999999999973

>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...

Probab=100.00  E-value=6.3e-36  Score=267.51  Aligned_cols=227  Identities=17%  Similarity=0.279  Sum_probs=176.0

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .++..+|+|++.......  ....++++.+....  ..+++++.+...... ....|+||||++||+|.+++.....+++
T Consensus        32 ~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~l~~~~~~~~  108 (279)
T 3fdn_A           32 QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH--LRHPNILRLYGYFHD-ATRVYLILEYAPLGTVYRELQKLSKFDE  108 (279)
T ss_dssp             TTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHHHSSCCH
T ss_pred             cCCcEEEEEEEeccccchhhHHHHHHHHHHHHHc--CCCCCCcchhheEec-CCEEEEEEecCCCCcHHHHHHhcCCCCH
Confidence            345578999886544332  24456666655555  356777776665433 3568999999999999999987777899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcch
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..... ......||+.|+|||++.+..++.++
T Consensus       109 ~~~~~~~~qi~~~l~~LH~~~i~H~dlkp~Nili~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  188 (279)
T 3fdn_A          109 QRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTDLCGTLDYLPPEMIEGRMHDEKV  188 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCEECCCCGGGEEECTTSCEEECSCCEESCC--------CCCCTTCCHHHHTTCCCCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecccCChHhEEEcCCCCEEEEeccccccCCcccccccCCCCCccCHhHhccCCCCccc
Confidence            9999999999999999999999998    999999999999999999865443 23456899999999999998899999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|..||....      .......+...                                        
T Consensus       189 Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~----------------------------------------  222 (279)
T 3fdn_A          189 DLWSLGVLCYEFLVGKPPFEANT------YQETYKRISRV----------------------------------------  222 (279)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHT----------------------------------------
T ss_pred             hhHhHHHHHHHHHHCCCCCCCCc------HHHHHHHHHhC----------------------------------------
Confidence            99999999999999999997543      22222222211                                        


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                        ...++...+..+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       223 --~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h~~~~~~~  265 (279)
T 3fdn_A          223 --EFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITANS  265 (279)
T ss_dssp             --CCCCCTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHCHHHHHHC
T ss_pred             --CCCCCCcCCHHHHHHHHHHhccChhhCCCHHHHhhCccccCCc
Confidence              1223344567899999999999999999999999999998743

>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*

Probab=100.00  E-value=8.3e-36  Score=273.44  Aligned_cols=256  Identities=21%  Similarity=0.245  Sum_probs=187.1

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..||+|.+.... ....++.+.++.+...++  .|++++.+..... .....|+||||++|++|.++......+++.
T Consensus        48 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~l~~~~~~~~~~~~~  124 (331)
T 4aaa_A           48 DTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQL--RHENLVNLLEVCK-KKKRWYLVFEFVDHTILDDLELFPNGLDYQ  124 (331)
T ss_dssp             TTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-ETTEEEEEEECCSEEHHHHHHHSTTCCCHH
T ss_pred             CCCceEEEEEEecCCCchHHHHHHHHHHHHHhhC--CCCCEeeEEEEee-cCCEEEEEEecCCcchHHHHHhhccCCCHH
Confidence            347788999875543 333455566676666664  5777777766544 345689999999999999988777778999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-CCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-KYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~~~~  170 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   .....+||+.|+|||++.+. .++.
T Consensus       125 ~~~~~~~qi~~~l~~LH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  204 (331)
T 4aaa_A          125 VVQKYLFQIINGIGFCHSHNIIHRDIKPENILVSQSGVVKLCDFGFARTLAAPGEVYDDEVATRWYRAPELLVGDVKYGK  204 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCTTC------------CCCCCTTCCHHHHTTCTTCCT
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEccCcChheEEEcCCCcEEEEeCCCceeecCCccccCCCcCCccccCcccccCCCCcch
Confidence            999999999999999999999998    999999999999999999976532   23456899999999999886 5899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|.+||.+.+      ..+.+..+....+..++.....       +............... ...
T Consensus       205 ~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~~  270 (331)
T 4aaa_A          205 AVDVWAIGCLVTEMFMGEPLFPGDS------DIDQLYHIMMCLGNLIPRHQEL-------FNKNPVFAGVRLPEIK-ERE  270 (331)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHH-------HHHCGGGTTCCCCCCS-SCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCC------cHHHHHHHHHHhCCCChhhhhH-------hhhccccccccCcccc-ccc
Confidence            9999999999999999999997655      6777778888877765543211       1111000000000000 000


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      .   .....+..++.+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       271 ~---~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~f~~  312 (331)
T 4aaa_A          271 P---LERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHHDFFQM  312 (331)
T ss_dssp             C---HHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHG
T ss_pred             h---hhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcCchhcc
Confidence            0   00112345788999999999999999999999999999985

>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}

Probab=100.00  E-value=3.4e-35  Score=263.73  Aligned_cols=227  Identities=20%  Similarity=0.191  Sum_probs=172.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----ccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----VVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----~~~   95 (358)
                      .+|..+++|.+...........+.++.+...++  .+++++.+..... .....|+||||++||+|.+++...    ..+
T Consensus        45 ~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  121 (285)
T 3is5_A           45 SSGLERVIKTINKDRSQVPMEQIEAEIEVLKSL--DHPNIIKIFEVFE-DYHNMYIVMETCEGGELLERIVSAQARGKAL  121 (285)
T ss_dssp             TTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTC--CCTTBCCEEEEEE-CSSEEEEEECCCSCCBHHHHHHHHHHHTCCC
T ss_pred             cCCceEEEEEeeccccchhHHHHHHHHHHHHhC--CCchHHhHHHhee-cCCeEEEEEEeCCCCcHHHHHHhhhhcccCC
Confidence            457788999988877777778888888877764  5677777766544 345689999999999999988532    568


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ++..+..++.+++.++.++|+.+++|+    +|||+   +.++.+||+|||+|.....  .....+||+.|+|||++. .
T Consensus       122 ~~~~~~~i~~qi~~~L~~LH~~~ivH~dikp~NIl~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~t~~y~aPE~~~-~  200 (285)
T 3is5_A          122 SEGYVAELMKQMMNALAYFHSQHVVHKDLKPENILFQDTSPHSPIKIIDFGLAELFKSDEHSTNAAGTALYMAPEVFK-R  200 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEESSSSTTCCEEECCCCCCCC----------CTTGGGCCHHHHT-T
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEEECCCCHHHEEEecCCCCCCEEEEeeecceecCCcccCcCcccccCcCChHHhc-c
Confidence            888999999999999999999999999    99999   4568899999999976443  244568999999999986 4


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||.+.+      .......+. ......                             
T Consensus       201 ~~~~~~Di~slG~il~~ll~g~~pf~~~~------~~~~~~~~~-~~~~~~-----------------------------  244 (285)
T 3is5_A          201 DVTFKCDIWSAGVVMYFLLTGCLPFTGTS------LEEVQQKAT-YKEPNY-----------------------------  244 (285)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH-HCCCCC-----------------------------
T ss_pred             CCCcccCeehHHHHHHHHHhCCCCCCCCC------HHHHHhhhc-cCCccc-----------------------------
Confidence            68999999999999999999999997543      111111111 000000                             


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                               .......++.+.+||.+||+.||++|||+.|+|+||||+.
T Consensus       245 ---------~~~~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~hp~f~~  284 (285)
T 3is5_A          245 ---------AVECRPLTPQAVDLLKQMLTKDPERRPSAAQVLHHEWFKQ  284 (285)
T ss_dssp             ---------CC--CCCCHHHHHHHHHHTCSCTTTSCCHHHHHTSGGGGC
T ss_pred             ---------ccccCcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHhhc
Confidence                     0001123578889999999999999999999999999985

>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A

Probab=100.00  E-value=3.6e-35  Score=264.05  Aligned_cols=229  Identities=14%  Similarity=0.153  Sum_probs=176.0

Q ss_pred             ccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCC---CCCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS---KPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .++..+|+|.+.. ..+...+.++.++.+...++  .|++++......   ......+|+||||++||+|.+++.....+
T Consensus        49 ~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~  126 (290)
T 1t4h_A           49 ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGL--QHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVM  126 (290)
T ss_dssp             TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSC
T ss_pred             CCceEEEEEEecchhhCHHHHHHHHHHHHHHHhC--CCCCeeeeeeeeccccCCCceEEEEEEecCCCCHHHHHHHccCC
Confidence            4566788888765 34566677788887777764  577777766542   22345689999999999999999877778


Q ss_pred             ChhhhhHHHHhhhhccccccCCC--CCCc----cccccc-CCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAA-VDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~-~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      ++..+..++.+++.++.++|+.+  ++|+    +|||++ .++.+||+|||+|...... .....||+.|+|||++.+ .
T Consensus       127 ~~~~~~~~~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~-~  205 (290)
T 1t4h_A          127 KIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-K  205 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-C
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCEEECCCCHHHEEEECCCCCEEEeeCCCcccccccccccccCCcCcCCHHHHhc-c
Confidence            89999999999999999999999  9998    999998 7899999999999765433 334579999999998875 5


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||....      ....+...  +.....                              
T Consensus       206 ~~~~~Di~slG~~l~~l~~g~~pf~~~~------~~~~~~~~--~~~~~~------------------------------  247 (290)
T 1t4h_A          206 YDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYRR--VTSGVK------------------------------  247 (290)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHHH--HTTTCC------------------------------
T ss_pred             CCCcchHHHHHHHHHHHHhCCCCCCCcC------cHHHHHHH--HhccCC------------------------------
Confidence            8999999999999999999999996543      11111111  110000                              


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ...++...++.+.+||.+||+.||.+|||+.|+|+||||++.
T Consensus       248 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~f~~~  289 (290)
T 1t4h_A          248 -------PASFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQEE  289 (290)
T ss_dssp             -------CGGGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC--
T ss_pred             -------ccccCCCCCHHHHHHHHHHccCChhhCCCHHHHhhCcccccC
Confidence                   001222335689999999999999999999999999999863

>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...

Probab=100.00  E-value=3e-35  Score=278.30  Aligned_cols=250  Identities=20%  Similarity=0.225  Sum_probs=182.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC-----CCCCCCCCcccccCCCCCcccccc----
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS-----KPSSPDNFSVDTIPNGVSVEERQN----   90 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv~e~~~gg~L~~~~~----   90 (358)
                      .+|..||+|.+...     +....++.+....  +.|++++.+....     ......+++||||++++ |.+.+.    
T Consensus        77 ~~~~~vaiK~~~~~-----~~~~~~E~~il~~--l~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~  148 (420)
T 1j1b_A           77 DSGELVAIKKVLQD-----KRFKNRELQIMRK--LDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPET-VYRVARHYSR  148 (420)
T ss_dssp             TTCCEEEEEEEECC-----TTSCCHHHHHHHT--CCCTTBCCEEEEEEEEETTTTEEEEEEEEECCCEE-HHHHHHHHHH
T ss_pred             CCCcEEEEEEeccc-----chhHHHHHHHHHH--cCCCCccceeeEEeccCCCCcceeEEeehhccccc-HHHHHHHHhh
Confidence            45778999987543     2233456655555  3677777764432     12233467999999974 443332    


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-CcEEEEecCCceecC--CCCCCCccCCCcchhHHH
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-VQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVL  163 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l  163 (358)
                      ....+.+..+..++.|++.|+.|+|+.+++||    +|||++.+ +.+||+|||+|+...  ......+||+.|+|||++
T Consensus       149 ~~~~l~~~~~~~~~~qi~~aL~~LH~~~ivHrDlkp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~  228 (420)
T 1j1b_A          149 AKQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELI  228 (420)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHTTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCTTCCCCSCCSCTTSCCHHHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEeCCCCeEEeccchhhhhcccCCCceeeeeCCCcCCHHHH
Confidence            34567888999999999999999999999999    99999965 678999999998653  234556899999999999


Q ss_pred             hCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+. .|+.++|||||||++|+|++|++||.+.+      ..+++..+.+.+|.++...+......   +..   . .+..
T Consensus       229 ~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~------~~~~l~~i~~~lg~p~~~~~~~~~~~---~~~---~-~~p~  295 (420)
T 1j1b_A          229 FGATDYTSSIDVWSAGCVLAELLLGQPIFPGDS------GVDQLVEIIKVLGTPTREQIREMNPN---YTE---F-KFPQ  295 (420)
T ss_dssp             TTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCSCCHHHHHHHCSC---CCC---C-CCCC
T ss_pred             cCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHHhCCCCHHHHHhhChh---hhh---h-ccCc
Confidence            876 69999999999999999999999998755      67889999999998876544221100   000   0 0000


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ....+.      ...++...++++.+||.+||++||.+|||+.|+|+||||...
T Consensus       296 ~~~~~~------~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~hp~f~~~  343 (420)
T 1j1b_A          296 IKAHPW------TKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  343 (420)
T ss_dssp             CCCCCH------HHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             cCCCCH------HHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhCCHhhccc
Confidence            000000      011334457889999999999999999999999999999864

>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*

Probab=100.00  E-value=2.6e-35  Score=284.57  Aligned_cols=228  Identities=20%  Similarity=0.251  Sum_probs=178.7

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|++.... ......++.++.+....  +.|++++.+...... ....|+|||||.||+|.+++.....+++.
T Consensus        60 ~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~--l~hpniv~~~~~~~~-~~~~~lv~e~~~~g~L~~~~~~~~~~~~~  136 (494)
T 3lij_A           60 VTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKL--LDHPNIMKLYDFFED-KRNYYLVMECYKGGELFDEIIHRMKFNEV  136 (494)
T ss_dssp             TTCCEEEEEEEEC-----CTTHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSCCHH
T ss_pred             CCCcEEEEEEEeccccCchHHHHHHHHHHHHHh--CCCCCCCeEEEEEEe-CCEEEEEEecCCCCcHHHHHHHcCCCCHH
Confidence            367788999887644 34456677777777666  467888877766543 45689999999999999988877788999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..++.+++.|+.|+|+.+++||    +|||++..   +.+||+|||+|.....  .....+||+.|+|||++.+ .|+
T Consensus       137 ~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE~l~~-~~~  215 (494)
T 3lij_A          137 DAAVIIKQVLSGVTYLHKHNIVHRDLKPENLLLESKEKDALIKIVDFGLSAVFENQKKMKERLGTAYYIAPEVLRK-KYD  215 (494)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEECBTTBCBCCCCSCTTTCCHHHHTT-CBC
T ss_pred             HHHHHHHHHHHHHHHHHHCCceeccCChhhEEEeCCCCCCcEEEEECCCCeECCCCccccccCCCcCeeCHHHHcc-cCC
Confidence            999999999999999999999999    99999764   5599999999976543  3456689999999999864 699


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|.+||.+.+      ..+.+..+.......+.                               
T Consensus       216 ~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~-------------------------------  258 (494)
T 3lij_A          216 EKCDVWSIGVILFILLAGYPPFGGQT------DQEILRKVEKGKYTFDS-------------------------------  258 (494)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCCS-------------------------------
T ss_pred             CchhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCc-------------------------------
Confidence            99999999999999999999997654      33444333321111110                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ......++.+.+||.+||+.||.+|||+.|+|+||||+.
T Consensus       259 -------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~hp~~~~  297 (494)
T 3lij_A          259 -------PEWKNVSEGAKDLIKQMLQFDSQRRISAQQALEHPWIKE  297 (494)
T ss_dssp             -------GGGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTCHHHHH
T ss_pred             -------hhcccCCHHHHHHHHHHCCCChhhCccHHHHhcCccccc
Confidence                   011234678999999999999999999999999999975

>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B

Probab=100.00  E-value=1e-34  Score=265.29  Aligned_cols=255  Identities=21%  Similarity=0.175  Sum_probs=189.4

Q ss_pred             ccCcccccccccCccch-hhhHHhhHHHHHhhhhc-cCCCccccccCCCC----CCCCCCCcccccCCCCCcccccccc-
Q 045353           20 ESSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGC-AGTEAFDESEADSK----PSSPDNFSVDTIPNGVSVEERQNDS-   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~iv~e~~~gg~L~~~~~~~-   92 (358)
                      .+|..||+|.+...... .....+.++.+....+. ..|++++.+.....    ......|+||||++ |+|.+++... 
T Consensus        35 ~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~  113 (326)
T 1blx_A           35 NGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVD-QDLTTYLDKVP  113 (326)
T ss_dssp             TTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCS-CBHHHHHHHSC
T ss_pred             CCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeecccCCCceEEEEEecCC-CCHHHHHHhcc
Confidence            35678899988654432 22334444444433321 36777777765433    23467899999999 5898887643 


Q ss_pred             -cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhC
Q 045353           93 -VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 -~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~  165 (358)
                       ..+++..+..++.+++.++.++|..+++|+    +|||++.++.+||+|||++.....  ......||+.|+|||++.+
T Consensus       114 ~~~~~~~~~~~~~~qi~~~l~~lH~~gi~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  193 (326)
T 1blx_A          114 EPGVPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQ  193 (326)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCceeccCCHHHeEEcCCCCEEEecCcccccccCCCCccccccccceeCHHHHhc
Confidence             347888999999999999999999999999    999999999999999999976543  2455689999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChh-hhhccCCchhhhhcc
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD-FFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~  244 (358)
                      ..++.++|||||||++|+|++|..||.+..      ....+..+...++.++...+........ .+....         
T Consensus       194 ~~~~~~~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  258 (326)
T 1blx_A          194 SSYATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKS---------  258 (326)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCC---------
T ss_pred             CCCCcchhHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHHHcCCCCcccCccccccchhhhcccC---------
Confidence            999999999999999999999999997655      6777888888888776654432211100 000000         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ..       ....+....+..+.+||.+||..||.+|||+.|+|+||||+...
T Consensus       259 ~~-------~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~hp~~~~~~  304 (326)
T 1blx_A          259 AQ-------PIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDLE  304 (326)
T ss_dssp             CC-------CGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTCC
T ss_pred             cc-------hhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhcCccccccc
Confidence            00       01123344578899999999999999999999999999998754

>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*

Probab=100.00  E-value=4.3e-35  Score=261.74  Aligned_cols=226  Identities=21%  Similarity=0.254  Sum_probs=177.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESSR  100 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~  100 (358)
                      ++..+++|.+...... ...+++++.+...++  .|++++.+..... .....|+||||++|++|.+++.....+++..+
T Consensus        33 ~~~~~a~k~~~~~~~~-~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~~  108 (277)
T 3f3z_A           33 TRIRRAAKKIPKYFVE-DVDRFKQEIEIMKSL--DHPNIIRLYETFE-DNTDIYLVMELCTGGELFERVVHKRVFRESDA  108 (277)
T ss_dssp             TCCEEEEEEEEGGGCS-CHHHHHHHHHHHHTC--CCTTBCCEEEEEE-CSSEEEEEEECCCSCBHHHHHHHHCSCCHHHH
T ss_pred             CCcEEEEEeehhhccc-hHHHHHHHHHHHHhC--CCCCEeeEEEEEe-cCCeEEEEEeccCCCcHHHHHHHcCCCCHHHH
Confidence            4557788887765443 355677777776664  6777777766544 34568999999999999999887778899999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCCcc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ..++.+++.++.++|+.+++|+    +|||+   +.++.+||+|||++.....  ......||+.|+|||++.+. ++.+
T Consensus       109 ~~i~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~-~~~~  187 (277)
T 3f3z_A          109 ARIMKDVLSAVAYCHKLNVAHRDLKPENFLFLTDSPDSPLKLIDFGLAARFKPGKMMRTKVGTPYYVSPQVLEGL-YGPE  187 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECCTTSCBCCCCSCTTTCCHHHHTTC-BCTT
T ss_pred             HHHHHHHHHHHHHHHHCCccCCCCCHHHEEEecCCCCCcEEEEecccceeccCccchhccCCCCCccChHHhccc-CCch
Confidence            9999999999999999999998    99999   7889999999999976543  34456899999999998764 8999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||.+..      .......+.......|...                               
T Consensus       188 ~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~~~-------------------------------  230 (277)
T 3f3z_A          188 CDEWSAGVMMYVLLCGYPPFSAPT------DSEVMLKIREGTFTFPEKD-------------------------------  230 (277)
T ss_dssp             HHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCCHHH-------------------------------
T ss_pred             hhehhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHhCCCCCCchh-------------------------------
Confidence            999999999999999999997543      3333333332211111111                               


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ....++.+.+||.+||+.||.+|||+.++|+||||+.
T Consensus       231 -------~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~h~~~~~  267 (277)
T 3f3z_A          231 -------WLNVSPQAESLIRRLLTKSPKQRITSLQALEHEWFEK  267 (277)
T ss_dssp             -------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTTSHHHHH
T ss_pred             -------hhcCCHHHHHHHHHHccCChhhCcCHHHHhcCHHHhc
Confidence                   0123678899999999999999999999999999975

>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=1.5e-35  Score=272.98  Aligned_cols=230  Identities=20%  Similarity=0.207  Sum_probs=172.5

Q ss_pred             ccCcccccccccCcc----chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----
Q 045353           20 ESSASKENKSLYGDL----TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----   91 (358)
                      .++..+|+|.+....    ......++.++.+...++  .+++++.+...... ....|+|||||+||+|.+++..    
T Consensus        49 ~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~-~~~~~lv~e~~~gg~L~~~l~~~~~~  125 (345)
T 3hko_A           49 QTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKL--HHPNIARLYEVYED-EQYICLVMELCHGGHLLDKLNVFIDD  125 (345)
T ss_dssp             TTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHEEEEEET
T ss_pred             CCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhC--CCCCcceeehhhcc-CCeEEEEEeCCCCCcHHHHHHHhhcc
Confidence            556678999886543    345556777777777664  57788877766543 4578999999999999998852    


Q ss_pred             ------------------------------------ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC
Q 045353           92 ------------------------------------SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV  131 (358)
Q Consensus        92 ------------------------------------~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~  131 (358)
                                                          .....+..+..++.+++.++.++|+.+++|+    +|||++.++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIll~~~~  205 (345)
T 3hko_A          126 STGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMRQIFSALHYLHNQGICHRDIKPENFLFSTNK  205 (345)
T ss_dssp             TTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESCSS
T ss_pred             cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHCCccccCCChhhEEEecCC
Confidence                                                1123566788899999999999999999999    999998776


Q ss_pred             --cEEEEecCCceecCC-------CCCCCccCCCcchhHHHhC--CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCC
Q 045353          132 --QCKLVDFGNACWTHK-------QFTNDIQTRQYRCPEVLLG--SKYSTSADLWSFACICFELATGDVLFDPHSGDNYD  200 (358)
Q Consensus       132 --~vkL~DFG~a~~~~~-------~~~~~~gt~~Y~aPE~l~~--~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~  200 (358)
                        .+||+|||+|.....       ......||+.|+|||++.+  ..++.++|||||||++|+|++|..||.+.+     
T Consensus       206 ~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~-----  280 (345)
T 3hko_A          206 SFEIKLVDFGLSKEFYKLNNGEYYGMTTKAGTPYFVAPEVLNTTNESYGPKCDAWSAGVLLHLLLMGAVPFPGVN-----  280 (345)
T ss_dssp             SCCEEECCCTTCEEGGGTTCC--------CCCGGGCCHHHHTCSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----
T ss_pred             CceEEEeeccccccccccCccccccccccCCCccccCchhhccCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCC-----
Confidence              899999999976432       1345689999999999986  568999999999999999999999997554     


Q ss_pred             CcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCC
Q 045353          201 KDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEK  280 (358)
Q Consensus       201 ~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~  280 (358)
                       ..+.+..+.......+                                      .......++.+.+||.+||+.||.+
T Consensus       281 -~~~~~~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~~li~~~l~~~p~~  321 (345)
T 3hko_A          281 -DADTISQVLNKKLCFE--------------------------------------NPNYNVLSPLARDLLSNLLNRNVDE  321 (345)
T ss_dssp             -HHHHHHHHHHCCCCTT--------------------------------------SGGGGGSCHHHHHHHHHHSCSCTTT
T ss_pred             -hHHHHHHHHhcccccC--------------------------------------CcccccCCHHHHHHHHHHcCCChhH
Confidence             3333333222111000                                      0111234678999999999999999


Q ss_pred             CCCHHHHhcCcCcCCC
Q 045353          281 RPTAAQCLSHPWMSAG  296 (358)
Q Consensus       281 R~ta~elL~hpwf~~~  296 (358)
                      |||+.|+|+||||+.-
T Consensus       322 Rps~~~~l~hp~~~~~  337 (345)
T 3hko_A          322 RFDAMRALQHPWISQF  337 (345)
T ss_dssp             SCCHHHHHHSHHHHTT
T ss_pred             CCCHHHHhcChhhccC
Confidence            9999999999999864

>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*

Probab=100.00  E-value=2.2e-35  Score=284.47  Aligned_cols=229  Identities=21%  Similarity=0.271  Sum_probs=179.1

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..+|+|++..... ......+.++.+...++  .|++++.+...... ....|+|||||.||+|.+++.....+++.
T Consensus        45 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  121 (486)
T 3mwu_A           45 ITQQEYAVKVINKASAKNKDTSTILREVELLKKL--DHPNIMKLFEILED-SSSFYIVGELYTGGELFDEIIKRKRFSEH  121 (486)
T ss_dssp             TTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHSSCCHH
T ss_pred             CCCCEEEEEEEecccccchHHHHHHHHHHHHHhC--CCCCcCeEEEEEEc-CCEEEEEEEcCCCCcHHHHHHhcCCCCHH
Confidence            4677899999865432 33456677777776664  67788877765443 46789999999999999998877788999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----cccccc---CCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAA---VDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~---~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ++..++.+++.++.|+|+.+++||    +|||++   .++.+||+|||+|.....  .....+||+.|+|||++.+ .|+
T Consensus       122 ~~~~i~~qi~~al~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~  200 (486)
T 3mwu_A          122 DAARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRG-TYD  200 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEESSSSTTCCEEECSCSCTTTBCCC----CCTTGGGGCCGGGGGS-CCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCeEeccCchHHEEEecCCCCCCEEEEECCcCeECCCCCccCCCcCCCCCCCHHHhCC-CCC
Confidence            999999999999999999999999    999995   456799999999976543  3456689999999999987 599


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|.+||.+.+      ..+.+..+.......+                                
T Consensus       201 ~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~--------------------------------  242 (486)
T 3mwu_A          201 EKCDVWSAGVILYILLSGTPPFYGKN------EYDILKRVETGKYAFD--------------------------------  242 (486)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCSC--------------------------------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCC--------------------------------
Confidence            99999999999999999999997654      3333333322111000                                


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            ...+...++.+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       243 ------~~~~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~hp~~~~~  283 (486)
T 3mwu_A          243 ------LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQKY  283 (486)
T ss_dssp             ------SGGGGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHCHHHHHT
T ss_pred             ------CcccCCCCHHHHHHHHHHcCCChhhCcCHHHHhcCHhhccC
Confidence                  01123457789999999999999999999999999999864

>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...

Probab=100.00  E-value=5.2e-35  Score=260.88  Aligned_cols=229  Identities=16%  Similarity=0.123  Sum_probs=179.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+...-.......++++.+.....  .+++++....... .....|+||||++||+|.+++.....+++..
T Consensus        30 ~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  106 (276)
T 2yex_A           30 VTEEAVAVKIVDMKRAVDCPENIKKEICINKML--NHENVVKFYGHRR-EGNIQYLFLEYCSGGELFDRIEPDIGMPEPD  106 (276)
T ss_dssp             TTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTC--CCTTBCCEEEEEE-ETTEEEEEEECCTTEEGGGGSBTTTBCCHHH
T ss_pred             CCCcEEEEEEeeeccchhhhHHHHHHHHHHHhc--CCCCceeeeeEEE-cCCEEEEEEEecCCCcHHHHHhhccCCCHHH
Confidence            367789999987666666667777777766653  5677777665543 3456799999999999999998877889999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCCCC-C
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGSKY-S  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~~~-~  169 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....     .....+||+.|+|||++.+..+ +
T Consensus       107 ~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  186 (276)
T 2yex_A          107 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA  186 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGCCGGGGTCSSBCH
T ss_pred             HHHHHHHHHHHHHHHHhCCeeccCCChHHEEEccCCCEEEeeCCCccccCCCcchhcccCCccccCccChHHHhcCCCCC
Confidence            99999999999999999999998    999999999999999999975431     2345689999999999998775 7


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.......     .....+.....                                   
T Consensus       187 ~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~~~~~~~~~~~-----------------------------------  226 (276)
T 2yex_A          187 EPVDVWSCGIVLTAMLAGELPWDQPSDSC-----QEYSDWKEKKT-----------------------------------  226 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCCCSCSCTTS-----HHHHHHHTTCT-----------------------------------
T ss_pred             CcchHHHHHHHHHHHHhCCCCCCCCchHH-----HHHHHhhhccc-----------------------------------
Confidence            88999999999999999999997544211     11111100000                                   


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                           ........+..+.+||.+||+.||++|||++|+++||||+..
T Consensus       227 -----~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~~~~~~~  268 (276)
T 2yex_A          227 -----YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNKP  268 (276)
T ss_dssp             -----TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTCC
T ss_pred             -----ccCchhhcCHHHHHHHHHHCCCCchhCCCHHHHhcCccccCh
Confidence                 001122346788999999999999999999999999999864

>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-35  Score=272.67  Aligned_cols=221  Identities=18%  Similarity=0.196  Sum_probs=178.6

Q ss_pred             cccCcccccccccCccc-------hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCC-Ccccccc
Q 045353           19 TESSASKENKSLYGDLT-------KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGV-SVEERQN   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg-~L~~~~~   90 (358)
                      ..+|..||+|.+.....       .....++.++.+...++  .+++++.+..... .....|+||||+.+| +|.+++.
T Consensus        46 ~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~Iv~~~~~~~-~~~~~~lv~e~~~~g~~l~~~~~  122 (335)
T 3dls_A           46 KEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRV--EHANIIKVLDIFE-NQGFFQLVMEKHGSGLDLFAFID  122 (335)
T ss_dssp             TTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTC--CCTTBCCEEEEEE-CSSEEEEEEECCTTSCBHHHHHH
T ss_pred             CCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhC--CCCCEeeEEEEEe-eCCEEEEEEEeCCCCccHHHHHH
Confidence            45677899998876542       23456777787777764  5777777766543 345788999999777 9999998


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHh
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~  164 (358)
                      ....+++..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......  ....+||+.|+|||++.
T Consensus       123 ~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~gt~~y~aPE~~~  202 (335)
T 3dls_A          123 RHPRLDEPLASYIFRQLVSAVGYLRLKDIIHRDIKDENIVIAEDFTIKLIDFGSAAYLERGKLFYTFCGTIEYCAPEVLM  202 (335)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECCTTCCBCEECSCGGGCCHHHHT
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHHHHhCCeEEeccCHHHEEEcCCCcEEEeecccceECCCCCceeccCCCccccChhhhc
Confidence            88889999999999999999999999999998    9999999999999999999876533  34457999999999999


Q ss_pred             CCCC-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          165 GSKY-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       165 ~~~~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +..+ +.++|||||||++|+|++|..||......                                              
T Consensus       203 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~----------------------------------------------  236 (335)
T 3dls_A          203 GNPYRGPELEMWSLGVTLYTLVFEENPFCELEET----------------------------------------------  236 (335)
T ss_dssp             TCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGGG----------------------------------------------
T ss_pred             CCCCCCCcccchhHHHHHHHHHhCCCchhhHHHH----------------------------------------------
Confidence            9886 88999999999999999999999532100                                              


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              .......+...++.+.+||.+||+.||++|||+.++|+||||+..
T Consensus       237 --------~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ell~hp~~~~~  281 (335)
T 3dls_A          237 --------VEAAIHPPYLVSKELMSLVSGLLQPVPERRTTLEKLVTDPWVTQP  281 (335)
T ss_dssp             --------TTTCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHHCTTTTCC
T ss_pred             --------HhhccCCCcccCHHHHHHHHHHccCChhhCcCHHHHhcCccccCC
Confidence                    000111223346789999999999999999999999999999864

>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}

Probab=100.00  E-value=4e-35  Score=283.92  Aligned_cols=229  Identities=18%  Similarity=0.206  Sum_probs=178.6

Q ss_pred             ccCcccccccccCccch------------hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccc
Q 045353           20 ESSASKENKSLYGDLTK------------NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~   87 (358)
                      .+|..+|+|++......            .....+.++.+...++  .|++++.+...... ....|+|||||+||+|.+
T Consensus        59 ~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~-~~~~~lv~e~~~gg~L~~  135 (504)
T 3q5i_A           59 NGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSL--DHPNIIKLFDVFED-KKYFYLVTEFYEGGELFE  135 (504)
T ss_dssp             TTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTC--CCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHH
T ss_pred             CCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhC--CCCCCCeEEEEEEc-CCEEEEEEecCCCCcHHH
Confidence            45678899998765433            2345566666666664  67788877766543 457899999999999999


Q ss_pred             ccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCceecCC--CCCCCccCCCcc
Q 045353           88 RQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNACWTHK--QFTNDIQTRQYR  158 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a~~~~~--~~~~~~gt~~Y~  158 (358)
                      ++.....+++..+..++.+++.++.|+|+.+++|+    +|||++.++   .+||+|||+|.....  .....+||+.|+
T Consensus       136 ~l~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~gt~~y~  215 (504)
T 3q5i_A          136 QIINRHKFDECDAANIMKQILSGICYLHKHNIVHRDIKPENILLENKNSLLNIKIVDFGLSSFFSKDYKLRDRLGTAYYI  215 (504)
T ss_dssp             HHHHHSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESSTTCCSSEEECCCTTCEECCTTSCBCCCCSCTTTC
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHCCeEeCCCcHHHEEEecCCCCccEEEEECCCCEEcCCCCccccccCCcCCC
Confidence            99887789999999999999999999999999999    999998876   699999999987653  345668999999


Q ss_pred             hhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          159 CPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       159 aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      |||++.+ .|+.++||||+||++|+|++|.+||.+.+      ....+..+....-..+.                    
T Consensus       216 aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~~~~~~i~~~~~~~~~--------------------  268 (504)
T 3q5i_A          216 APEVLKK-KYNEKCDVWSCGVIMYILLCGYPPFGGQN------DQDIIKKVEKGKYYFDF--------------------  268 (504)
T ss_dssp             CHHHHTT-CBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCCH--------------------
T ss_pred             CHHHhcc-CCCchHHHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCCCCc--------------------
Confidence            9999874 69999999999999999999999997654      33344333321111110                    


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                        ..+...++.+.+||.+||++||.+|||+.|+|+||||+..
T Consensus       269 ------------------~~~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h~~~~~~  308 (504)
T 3q5i_A          269 ------------------NDWKNISDEAKELIKLMLTYDYNKRCTAEEALNSRWIKKY  308 (504)
T ss_dssp             ------------------HHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHHT
T ss_pred             ------------------cccCCCCHHHHHHHHHHcCCChhHCCCHHHHhcCHhhhhc
Confidence                              0112346789999999999999999999999999999864

>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...

Probab=100.00  E-value=2.2e-35  Score=264.66  Aligned_cols=227  Identities=15%  Similarity=0.222  Sum_probs=179.3

Q ss_pred             cCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ++..+|+|.+......  ....+++++.+....+  .|++++........ ....|+||||++||+|.+++.....+++.
T Consensus        38 ~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  114 (284)
T 2vgo_A           38 NKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHL--RHPNILRMYNYFHD-RKRIYLMLEFAPRGELYKELQKHGRFDEQ  114 (284)
T ss_dssp             TTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTC--CCTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHHHSSCCHH
T ss_pred             CCcEEEEEEEcccccchHHHHHHHHHHHHHHhcC--CCCCEeeEEEEEEc-CCEEEEEEEeCCCCcHHHHHHhcCCCCHH
Confidence            4667899988654332  2345666666666553  56777776655433 45789999999999999999877778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++..... ......||+.|+|||++.+..++.++|
T Consensus       115 ~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~D  194 (284)
T 2vgo_A          115 RSATFMEELADALHYCHERKVIHRDIKPENLLMGYKGELKIADFGWSVHAPSLRRRTMCGTLDYLPPEMIEGKTHDEKVD  194 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECTTCCEEECCCTTCEECSSSCBCCCCSCGGGCCHHHHTTCCBCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCceecCCCHHHEEEcCCCCEEEecccccccCcccccccccCCCCcCCHHHhccCCCCcccc
Confidence            999999999999999999999998    999999999999999999976543 234568999999999999988999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|..||...+      .......+..                                          
T Consensus       195 i~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~------------------------------------------  226 (284)
T 2vgo_A          195 LWCAGVLCYEFLVGMPPFDSPS------HTETHRRIVN------------------------------------------  226 (284)
T ss_dssp             HHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHT------------------------------------------
T ss_pred             hhhHHHHHHHHHHCCCCCCCCC------HhHHHHHHhc------------------------------------------
Confidence            9999999999999999996543      2222222111                                          


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ....++...+..+.+||.+||+.||.+|||++++++||||+....
T Consensus       227 ~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~h~~~~~~~~  271 (284)
T 2vgo_A          227 VDLKFPPFLSDGSKDLISKLLRYHPPQRLPLKGVMEHPWVKANSR  271 (284)
T ss_dssp             TCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTCHHHHHHCC
T ss_pred             cccCCCCcCCHHHHHHHHHHhhcCHhhCCCHHHHhhCHHHHhhcc
Confidence            011233445778999999999999999999999999999986443

>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7

Probab=100.00  E-value=2.7e-35  Score=272.70  Aligned_cols=231  Identities=14%  Similarity=0.126  Sum_probs=176.1

Q ss_pred             ccCcccccccccCccc---hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLT---KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|++.....   ......++++.+....+. .+++++.+..... .....|+|||||+||+|.+++.....++
T Consensus        80 ~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~-~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~  157 (355)
T 1vzo_A           80 DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-QSPFLVTLHYAFQ-TETKLHLILDYINGGELFTHLSQRERFT  157 (355)
T ss_dssp             TTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-TCTTBCCEEEEEE-ETTEEEEEECCCCSCBHHHHHHHHSCCC
T ss_pred             CCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHcc-CCCceeEEEEEEe-eCceEEEEeecCCCCCHHHHHHHcCCCC
Confidence            4778899999876432   233455566666555542 5666666655433 2456899999999999999998777889


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----CCCCCccCCCcchhHHHhCC--
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----QFTNDIQTRQYRCPEVLLGS--  166 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----~~~~~~gt~~Y~aPE~l~~~--  166 (358)
                      +..+..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|+....    .....+||+.|+|||++.+.  
T Consensus       158 ~~~~~~~~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  237 (355)
T 1vzo_A          158 EHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS  237 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCcEEEeeCCCCeecccCCCCcccCcccCcCccChhhhcCCCC
Confidence            99999999999999999999999999    999999999999999999976532    23345899999999999974  


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||........  .......+.   .                                
T Consensus       238 ~~~~~~DvwslG~il~ell~g~~pf~~~~~~~~--~~~~~~~~~---~--------------------------------  280 (355)
T 1vzo_A          238 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKNS--QAEISRRIL---K--------------------------------  280 (355)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCCC--HHHHHHHHH---H--------------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCccCCccch--HHHHHHHHh---c--------------------------------
Confidence            378999999999999999999999975432211  111111111   0                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                             ....++...+..+.+||.+||..||.+||     |++|+++||||...
T Consensus       281 -------~~~~~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h~~f~~~  328 (355)
T 1vzo_A          281 -------SEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQKI  328 (355)
T ss_dssp             -------CCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTTC
T ss_pred             -------cCCCCCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcCcchhcC
Confidence                   11123445577899999999999999999     99999999999863

>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*

Probab=100.00  E-value=1.3e-35  Score=269.69  Aligned_cols=230  Identities=19%  Similarity=0.235  Sum_probs=172.7

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCCC---CCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPSS---PDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|++......+.  ..+++++.+...+  +.|++++.+........   ...|+||||++||+|.+++.....
T Consensus        35 ~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~~~~~~~~~~lv~e~~~g~~L~~~l~~~~~  112 (311)
T 3ork_A           35 RDHRDVAVKVLRADLARDPSFYLRFRREAQNAAA--LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP  112 (311)
T ss_dssp             TTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCC--CCCTTBCCEEEEEEEEETTEEEEEEEEECCCEEEHHHHHHHHCS
T ss_pred             CCCceEEEEEeCccccCCHHHHHHHHHHHHHHHc--CCCCCcceEEEeeeccCCCCcccEEEEecCCCCCHHHHHHhcCC
Confidence            5677899999987665443  3455555554444  46778887766543322   234999999999999999987778


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.++..++.+++.++.|+|+.+++|+    +|||++.++.+||+|||++......      ....+||+.|+|||++.
T Consensus       113 ~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~gt~~y~aPE~~~  192 (311)
T 3ork_A          113 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR  192 (311)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEETTSCEEECCCSCC------------------CCTTCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCHHHEEEcCCCCEEEeeccCcccccccccccccccccCcCcccCCHHHhc
Confidence            8999999999999999999999999999    9999999999999999999764322      23347899999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++|||||||++|+|++|+.||.+..      .......+... ...+..                         
T Consensus       193 ~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~------~~~~~~~~~~~-~~~~~~-------------------------  240 (311)
T 3ork_A          193 GDSVDARSDVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVRE-DPIPPS-------------------------  240 (311)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHC-CCCCHH-------------------------
T ss_pred             CCCCCchHhHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHhcC-CCCCcc-------------------------
Confidence            9999999999999999999999999997543      22222222111 111100                         


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                  ......+..+.+||.+||+.||.+||++.++|.|+|++.
T Consensus       241 ------------~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~  279 (311)
T 3ork_A          241 ------------ARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV  279 (311)
T ss_dssp             ------------HHSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred             ------------cccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence                        112234678999999999999999999999999999975

>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}

Probab=100.00  E-value=3.2e-35  Score=267.24  Aligned_cols=223  Identities=17%  Similarity=0.186  Sum_probs=164.7

Q ss_pred             ccCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      .+|..||+|.+....... ...+..++....... ..+++++.+..... .....|+||||| +|+|.+++.. ...+++
T Consensus        80 ~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~-~~h~~iv~l~~~~~-~~~~~~lv~e~~-~~~L~~~~~~~~~~l~~  156 (311)
T 3p1a_A           80 EDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKV-GQHPCCVRLEQAWE-EGGILYLQTELC-GPSLQQHCEAWGASLPE  156 (311)
T ss_dssp             TTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHH-CCCTTBCCEEEEEE-ETTEEEEEEECC-CCBHHHHHHHHCSCCCH
T ss_pred             CCCeEEEEEEecccccChHHHHHHHHHHHHHHHh-cCCCcEEEEEEEEE-eCCEEEEEEecc-CCCHHHHHHhcCCCCCH
Confidence            367889999876654332 223333333333332 36777777665543 346789999999 6677776654 345889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+|......  .....||+.|+|||++.+ .++.+
T Consensus       157 ~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~  235 (311)
T 3p1a_A          157 AQVWGYLRDTLLALAHLHSQGLVHLDVKPANIFLGPRGRCKLGDFGLLVELGTAGAGEVQEGDPRYMAPELLQG-SYGTA  235 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECGGGCEEECCCTTCEECC------CCCCCGGGCCGGGGGT-CCSTH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCEecCCCCHHHEEECCCCCEEEccceeeeecccCCCCcccCCCccccCHhHhcC-CCCch
Confidence            9999999999999999999999998    9999999999999999999776533  344579999999999887 79999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..+|.+.         .....+..  +..+.                                 
T Consensus       236 ~DiwslG~il~el~~g~~~~~~~---------~~~~~~~~--~~~~~---------------------------------  271 (311)
T 3p1a_A          236 ADVFSLGLTILEVACNMELPHGG---------EGWQQLRQ--GYLPP---------------------------------  271 (311)
T ss_dssp             HHHHHHHHHHHHHHHTCCCCSSH---------HHHHHHTT--TCCCH---------------------------------
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCc---------cHHHHHhc--cCCCc---------------------------------
Confidence            99999999999999997666421         11111110  00100                                 


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                           .++...++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       272 -----~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~hp~~~~  310 (311)
T 3p1a_A          272 -----EFTAGLSSELRSVLVMMLEPDPKLRATAEALLALPVLRQ  310 (311)
T ss_dssp             -----HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGSC
T ss_pred             -----ccccCCCHHHHHHHHHHcCCChhhCcCHHHHHhCccccC
Confidence                 112334678999999999999999999999999999975

>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}

Probab=100.00  E-value=2.1e-35  Score=263.83  Aligned_cols=226  Identities=19%  Similarity=0.234  Sum_probs=155.0

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccC
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~   96 (358)
                      .+|..+|+|.+......  ....++.++.+...+  ..|++++........ ....|+||||++||+|.+++... ..++
T Consensus        34 ~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~  110 (278)
T 3cok_A           34 HTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQ--LKHPSILELYNYFED-SNYVYLVLEMCHNGEMNRYLKNRVKPFS  110 (278)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT--BCCTTBCCEEEEEEC-SSEEEEEEECCTTEEHHHHHHTCSSCCC
T ss_pred             cCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHh--CCCCCeEeEEEEEcc-CCeEEEEEecCCCCcHHHHHhhccCCCC
Confidence            46778999998654322  223566666666655  356777776655433 45789999999999999988764 5678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   .....+||+.|+|||++.+..++
T Consensus       111 ~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  190 (278)
T 3cok_A          111 ENEARHFMHQIITGMLYLHSHGILHRDLTLSNLLLTRNMNIKIADFGLATQLKMPHEKHYTLCGTPNYISPEIATRSAHG  190 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSSCCGGGEEECTTCCEEECCCTTCEECC---------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeecCCCCHHHEEEcCCCCEEEEeecceeeccCCCCcceeccCCCCcCCcchhcCCCCC
Confidence            89999999999999999999999998    999999999999999999976542   23345799999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||........      +..                                         
T Consensus       191 ~~~Di~slG~il~~l~~g~~p~~~~~~~~~------~~~-----------------------------------------  223 (278)
T 3cok_A          191 LESDVWSLGCMFYTLLIGRPPFDTDTVKNT------LNK-----------------------------------------  223 (278)
T ss_dssp             -CTHHHHHHHHHHHHHHSSCSSCCCSCC----------------------------------------------------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCChhHHHH------HHH-----------------------------------------
Confidence            999999999999999999999975432110      000                                         


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                       .....+..+...+..+.+||.+||+.||++|||++++|+||||...
T Consensus       224 -~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  269 (278)
T 3cok_A          224 -VVLADYEMPSFLSIEAKDLIHQLLRRNPADRLSLSSVLDHPFMSRN  269 (278)
T ss_dssp             -CCSSCCCCCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTTSTTTC--
T ss_pred             -HhhcccCCccccCHHHHHHHHHHcccCHhhCCCHHHHhcCccccCC
Confidence             0000112334456789999999999999999999999999999864

>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*

Probab=100.00  E-value=8e-35  Score=267.41  Aligned_cols=228  Identities=19%  Similarity=0.210  Sum_probs=181.1

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|.+.....  ...+..+.++......  +.|++++.+...... ....|+||||++|++|.+++.....+++.
T Consensus        65 ~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~l~~~  141 (335)
T 2owb_A           65 TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS--LAHQHVVGFHGFFED-NDFVFVVLELCRRRSLLELHKRRKALTEP  141 (335)
T ss_dssp             TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT--CCCTTBCCEEEEEEC-SSEEEEEECCCTTCBHHHHHHHHCSCCHH
T ss_pred             CCCEEEEEEechhhhcCHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEec-CCeEEEEEecCCCCCHHHHHhccCCCCHH
Confidence            456788888776543  3455666666666555  467777777665443 45789999999999999998877778999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   .....+||+.|+|||++.+..++.+
T Consensus       142 ~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  221 (335)
T 2owb_A          142 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFE  221 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHHTSCBCTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCEecCCCchhEEEcCCCCEEEeeccCceecccCcccccccCCCccccCHHHhccCCCCch
Confidence            999999999999999999999999    999999999999999999976542   2345579999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||....      ..+....+..                                        
T Consensus       222 ~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~~~~----------------------------------------  255 (335)
T 2owb_A          222 VDVWSIGCIMYTLLVGKPPFETSC------LKETYLRIKK----------------------------------------  255 (335)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHH----------------------------------------
T ss_pred             hhHHHHHHHHHHHHHCcCCCCCCC------HHHHHHHHhc----------------------------------------
Confidence            999999999999999999996543      1222211111                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                        ..+.++...+..+.+||.+||+.||++|||+.|+|+||||.....+
T Consensus       256 --~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~~~~~~~~~~~  301 (335)
T 2owb_A          256 --NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIP  301 (335)
T ss_dssp             --TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCCC
T ss_pred             --CCCCCCccCCHHHHHHHHHHccCChhHCcCHHHHhcCccccCCCcc
Confidence              1112334456788999999999999999999999999999976543

>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*

Probab=100.00  E-value=1e-34  Score=268.88  Aligned_cols=224  Identities=14%  Similarity=0.123  Sum_probs=179.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc-----
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV-----   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~-----   94 (358)
                      .+|..||+|.+.........+++.++.+...++. .|++++.........+...|+|||||+||+|.+++.....     
T Consensus        50 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hpniv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~  128 (359)
T 3vhe_A           50 ATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY  128 (359)
T ss_dssp             TCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSTTSCCEEEEECCTTEEHHHHHHTTTTSBCSC
T ss_pred             ccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhc-CCcceeeeeeeeecCCCceEEEEEecCCCcHHHHHHhcccccccc
Confidence            4556899999998888888888888888887753 6788888887766666779999999999999998865332     


Q ss_pred             -------------------------------------------------------------cChhhhhHHHHhhhhcccc
Q 045353           95 -------------------------------------------------------------NNESSRDNEVKNTSQGVKG  113 (358)
Q Consensus        95 -------------------------------------------------------------~~~~~~~~~l~~~~~~~~~  113 (358)
                                                                                   +++..+..++.+++.++.|
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~  208 (359)
T 3vhe_A          129 KTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGFVEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEF  208 (359)
T ss_dssp             C------------------------------------------------------CTTTTCBCHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhhcccccccccchhhhccccccCccccccccccccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHH
Confidence                                                                         7788899999999999999


Q ss_pred             ccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhh
Q 045353          114 HRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFEL  184 (358)
Q Consensus       114 ~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~el  184 (358)
                      +|+.+++|+    +|||++.++.+||+|||+|......     .....||+.|+|||++.+..|+.++|||||||++|+|
T Consensus       209 LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el  288 (359)
T 3vhe_A          209 LASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEI  288 (359)
T ss_dssp             HHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTSCTTCEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHCCcccCCCChhhEEEcCCCcEEEEeccceeeecccccchhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHH
Confidence            999999999    9999999999999999999765322     3345788999999999999999999999999999999


Q ss_pred             hc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhH
Q 045353          185 AT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDA  263 (358)
Q Consensus       185 l~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (358)
                      ++ |..||.+...     .......+.. ..                                        ....+...+
T Consensus       289 lt~g~~p~~~~~~-----~~~~~~~~~~-~~----------------------------------------~~~~~~~~~  322 (359)
T 3vhe_A          289 FSLGASPYPGVKI-----DEEFCRRLKE-GT----------------------------------------RMRAPDYTT  322 (359)
T ss_dssp             TTTSCCSSTTCCC-----SHHHHHHHHH-TC----------------------------------------CCCCCTTCC
T ss_pred             HhcCCCCCCccch-----hHHHHHHHHc-CC----------------------------------------CCCCCCCCC
Confidence            98 9999975542     1111111111 00                                        112233456


Q ss_pred             HHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          264 KDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       264 ~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                      +.+.+||.+||+.||.+|||+.|+++|
T Consensus       323 ~~l~~li~~~l~~dP~~Rps~~ell~~  349 (359)
T 3vhe_A          323 PEMYQTMLDCWHGEPSQRPTFSELVEH  349 (359)
T ss_dssp             HHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             HHHHHHHHHHccCChhhCCCHHHHHHH
Confidence            789999999999999999999999876

>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A

Probab=100.00  E-value=4.9e-35  Score=265.05  Aligned_cols=229  Identities=20%  Similarity=0.248  Sum_probs=176.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+..... .....+.++.+....+  .+++++....... .....|+||||++||+|.+++.....+++..
T Consensus        32 ~~~~~vaiK~~~~~~~-~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  107 (304)
T 2jam_A           32 LTGKLFALKCIKKSPA-FRDSSLENEIAVLKKI--KHENIVTLEDIYE-STTHYYLVMQLVSGGELFDRILERGVYTEKD  107 (304)
T ss_dssp             TTCCEEEEEEEECC-------HHHHHHHHHHHC--CCTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHHHSCCCHHH
T ss_pred             CCCCEEEEEEEecccc-cchHHHHHHHHHHHhC--CCCCeeehhhhcc-cCCEEEEEEEcCCCccHHHHHHHcCCCCHHH
Confidence            3677899998875432 2334566666666553  5677777665443 3456899999999999999988777788999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +|||+   +.++.+||+|||++...... ....+||+.|+|||++.+..++.+
T Consensus       108 ~~~~~~qi~~~l~~lH~~~i~H~dikp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  187 (304)
T 2jam_A          108 ASLVIQQVLSAVKYLHENGIVHRDLKPENLLYLTPEENSKIMITDFGLSKMEQNGIMSTACGTPGYVAPEVLAQKPYSKA  187 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCSCCGGGCEESSSSTTCCEEBCSCSTTCCCCCBTTHHHHSCCCBCCTTTBSSCSCCHH
T ss_pred             HHHHHHHHHHHHHHHHHCCccccCCCHHHEEEecCCCCCCEEEccCCcceecCCCccccccCCCCccChHHhccCCCCch
Confidence            99999999999999999999998    99999   77899999999999765432 233478999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||.+..      .......+.......+                                  
T Consensus       188 ~Di~slG~il~~l~~g~~pf~~~~------~~~~~~~i~~~~~~~~----------------------------------  227 (304)
T 2jam_A          188 VDCWSIGVITYILLCGYPPFYEET------ESKLFEKIKEGYYEFE----------------------------------  227 (304)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHCCCCCC----------------------------------
T ss_pred             hhHHHHHHHHHHHHHCCCCCCCCC------HHHHHHHHHcCCCCCC----------------------------------
Confidence            999999999999999999997543      2333333322111100                                  


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          .......+..+.+||.+||..||++|||+.|+|+||||...
T Consensus       228 ----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~  268 (304)
T 2jam_A          228 ----SPFWDDISESAKDFICHLLEKDPNERYTCEKALSHPWIDGN  268 (304)
T ss_dssp             ----TTTTTTSCHHHHHHHHHHHCSSTTTSCCHHHHHTSHHHHSS
T ss_pred             ----ccccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCccccCC
Confidence                01223446789999999999999999999999999999864

>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*

Probab=100.00  E-value=2.6e-34  Score=259.29  Aligned_cols=231  Identities=18%  Similarity=0.205  Sum_probs=176.3

Q ss_pred             ccCcccccccccCcc----ch----hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           20 ESSASKENKSLYGDL----TK----NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+|..+|+|.+...-    +.    ..+..+.++.+...++ ..|++++.+..... .....|+||||++||+|.+++..
T Consensus        40 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l-~~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~  117 (298)
T 1phk_A           40 PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV-SGHPNIIQLKDTYE-TNTFFFLVFDLMKKGELFDYLTE  117 (298)
T ss_dssp             TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHH-TTCTTBCCEEEEEE-CSSEEEEEEECCTTCBHHHHHHH
T ss_pred             CcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHh-cCCCCEeeeeeeec-cCCeEEEEEeccCCCcHHHHHhc
Confidence            367788999886542    22    2234444555554443 25777777766543 34678999999999999999988


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHh-
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLL-  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~-  164 (358)
                      ...+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....  ......||+.|+|||++. 
T Consensus       118 ~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  197 (298)
T 1phk_A          118 KVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIEC  197 (298)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCcccCCCCcceEEEcCCCcEEEecccchhhcCCCcccccccCCccccCHHHhcc
Confidence            7788999999999999999999999999998    999999999999999999976543  344568999999999986 


Q ss_pred             -----CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          165 -----GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       165 -----~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                           ...++.++|||||||++|+|++|..||...+      .......+.......+                      
T Consensus       198 ~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~----------------------  249 (298)
T 1phk_A          198 SMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNYQFG----------------------  249 (298)
T ss_dssp             HHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCCC----------------------
T ss_pred             ccccccccCCcccccHhHHHHHHHHHHCCCCCcCcc------HHHHHHHHhcCCcccC----------------------
Confidence                 3458999999999999999999999996543      2222222221110000                      


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                      .......+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       250 ----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  290 (298)
T 1phk_A          250 ----------------SPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQY  290 (298)
T ss_dssp             ----------------TTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCTT
T ss_pred             ----------------cccccccCHHHHHHHHHHccCCcccCCCHHHHHhChHhhhc
Confidence                            01112346789999999999999999999999999999863

>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*

Probab=100.00  E-value=3.2e-34  Score=260.43  Aligned_cols=228  Identities=17%  Similarity=0.139  Sum_probs=170.7

Q ss_pred             ccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc---c
Q 045353           20 ESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV---N   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~---~   95 (358)
                      .+|..+|+|.+.... ......++.++.+...++  .+++++........ ....|+||||++||+|.+++.....   +
T Consensus        58 ~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  134 (309)
T 3p86_A           58 WHGSDVAVKILMEQDFHAERVNEFLREVAIMKRL--RHPNIVLFMGAVTQ-PPNLSIVTEYLSRGSLYRLLHKSGAREQL  134 (309)
T ss_dssp             ETTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHC--CCTTBCCEEEEECS-TTCCEEEEECCTTCBHHHHHHSTTHHHHS
T ss_pred             ECCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEEE-CCceEEEEecCCCCcHHHHHhhcCCCCCC
Confidence            467789999987644 444556777787777764  57777777665543 4568999999999999999876553   7


Q ss_pred             ChhhhhHHHHhhhhccccccCCC--CCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ++..+..++.+++.++.++|+.+  ++|+    +|||++.++.+||+|||+|+.....   ....+||+.|+|||++.+.
T Consensus       135 ~~~~~~~i~~qi~~aL~~LH~~~~~ivH~Dikp~NIll~~~~~~kL~Dfg~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~  214 (309)
T 3p86_A          135 DERRRLSMAYDVAKGMNYLHNRNPPIVHRNLKSPNLLVDKKYTVKVCDFGLSRLKASTFLSSKSAAGTPEWMAPEVLRDE  214 (309)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSSSCCCCTTCCGGGEEECTTCCEEECCCC-----------------CCTTSCHHHHTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCCEECCCCChhhEEEeCCCcEEECCCCCCccccccccccccCCCCccccChhhhcCC
Confidence            88899999999999999999999  9999    9999999999999999999765433   3455899999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||.+.+      .......+.. ..                                
T Consensus       215 ~~~~~~DiwslG~il~elltg~~Pf~~~~------~~~~~~~~~~-~~--------------------------------  255 (309)
T 3p86_A          215 PSNEKSDVYSFGVILWELATLQQPWGNLN------PAQVVAAVGF-KC--------------------------------  255 (309)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHCCCTTTTSC------HHHHHHHHHH-SC--------------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHh-cC--------------------------------
Confidence            99999999999999999999999997543      2222222111 00                                


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc--CcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~--hpwf~~~  296 (358)
                             .....+..+++.+.+||.+||+.||.+|||+.++++  ++|+...
T Consensus       256 -------~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~  300 (309)
T 3p86_A          256 -------KRLEIPRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA  300 (309)
T ss_dssp             -------CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred             -------CCCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence                   011234456788999999999999999999999988  6777653

>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*

Probab=100.00  E-value=1.4e-34  Score=260.63  Aligned_cols=229  Identities=19%  Similarity=0.208  Sum_probs=180.9

Q ss_pred             cCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           21 SSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      +|..+|+|.+.....  ...+.++.++.+....  ..|++++.+...... ....|+||||++|++|.+++.....+++.
T Consensus        39 ~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  115 (294)
T 2rku_A           39 TKEVFAGKIVPKSLLLKPHQREKMSMEISIHRS--LAHQHVVGFHGFFED-NDFVFVVLELCRRRSLLELHKRRKALTEP  115 (294)
T ss_dssp             TCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHT--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHCSCCHH
T ss_pred             CCceEEEEEechhhccCHHHHHHHHHHHHHHHh--CCCCCEeeeeeeecc-CCEEEEEEecCCCCCHHHHHHhcCCCCHH
Confidence            456788888766543  3455666666666655  367777777665433 45689999999999999998877778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....   ......||+.|+|||++.+..++.+
T Consensus       116 ~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  195 (294)
T 2rku_A          116 EARYYLRQIVLGCQYLHRNRVIHRDLKLGNLFLNEDLEVKIGDFGLATKVEYDGERKKVLCGTPNYIAPEVLSKKGHSFE  195 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCCSSCCHHHHTTSCBCTH
T ss_pred             HHHHHHHHHHHHHHHHHHCCccccCCChHhEEEcCCCCEEEEeccCceecccCccccccccCCCCcCCcchhccCCCCch
Confidence            999999999999999999999998    999999999999999999976542   2344579999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||....      ..+....+..                                        
T Consensus       196 ~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~----------------------------------------  229 (294)
T 2rku_A          196 VDVWSIGCIMYTLLVGKPPFETSC------LKETYLRIKK----------------------------------------  229 (294)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHT----------------------------------------
T ss_pred             hhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHhh----------------------------------------
Confidence            999999999999999999996543      1221111110                                        


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                        .....+...+..+.+||.+||+.||++|||++|+++||||.....+.
T Consensus       230 --~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~~~~  276 (294)
T 2rku_A          230 --NEYSIPKHINPVAASLIQKMLQTDPTARPTINELLNDEFFTSGYIPA  276 (294)
T ss_dssp             --TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGSHHHHTSCCCS
T ss_pred             --ccCCCccccCHHHHHHHHHHcccChhhCcCHHHHhhChheecCCcCC
Confidence              01123344567889999999999999999999999999999765443

>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...

Probab=100.00  E-value=1.6e-34  Score=258.77  Aligned_cols=228  Identities=18%  Similarity=0.223  Sum_probs=175.5

Q ss_pred             cCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           21 SSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      +|..+|+|.+.......     ....+.++.+...++  .|++++........ ....|+||||++|++|.+++.....+
T Consensus        29 ~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~  105 (283)
T 3bhy_A           29 TGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREI--RHPNIITLHDIFEN-KTDVVLILELVSGGELFDFLAEKESL  105 (283)
T ss_dssp             TCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSSC
T ss_pred             CCCeeehHHhhhccccccccchHHHHHHHHHHHHHhC--CCCCeeehhheecC-CCeEEEEEeecCCCcHHHHHHhcCCC
Confidence            57788988876543322     356677777766664  56777776655433 45689999999999999999877778


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----cEEEEecCCceecCC--CCCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----QCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++.++..++.+++.++.++|+.+++|+    +|||++.++    .+||+|||++.....  ......||+.|+|||++.+
T Consensus       106 ~~~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~  185 (283)
T 3bhy_A          106 TEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKIEAGNEFKNIFGTPEFVAPEIVNY  185 (283)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSSSSCCEEECCCTTCEECC--------CCCGGGCCHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCccCCCCChHHEEEecCCCCCCceEEEecccceeccCCCcccccCCCcCccCcceecC
Confidence            999999999999999999999999998    999998877    899999999976543  2345579999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..++.++|||||||++|+|++|..||.+.+      ....+..+.......+.                           
T Consensus       186 ~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~~---------------------------  232 (283)
T 3bhy_A          186 EPLGLEADMWSIGVITYILLSGASPFLGET------KQETLTNISAVNYDFDE---------------------------  232 (283)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHTTCCCCCH---------------------------
T ss_pred             CCCCcchhhhhHHHHHHHHHHCCCCCCCcc------hHHHHHHhHhcccCCcc---------------------------
Confidence            899999999999999999999999997543      23333222211111110                           


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                 ......+..+.+||.+||..||++|||+.|+|+||||+.
T Consensus       233 -----------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~  271 (283)
T 3bhy_A          233 -----------EYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKA  271 (283)
T ss_dssp             -----------HHHTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHH
T ss_pred             -----------hhcccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHH
Confidence                       011233678899999999999999999999999999985

>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*

Probab=100.00  E-value=2.1e-34  Score=265.86  Aligned_cols=226  Identities=18%  Similarity=0.173  Sum_probs=173.8

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .+|..||+|.+....  +.....++.++.+....+  .|++++....... .....|+|||||.| +|.+++. ....++
T Consensus        77 ~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~-~~~~~~lv~e~~~g-~l~~~l~~~~~~l~  152 (348)
T 1u5q_A           77 RNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKL--RHPNTIQYRGCYL-REHTAWLVMEYCLG-SASDLLEVHKKPLQ  152 (348)
T ss_dssp             TTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE-ETTEEEEEEECCSE-EHHHHHHHHTSCCC
T ss_pred             cCCeEEEEEEEccccccchHHHHHHHHHHHHHHhC--CCCCEeeEEEEEE-ECCeEEEEEecCCC-CHHHHHHHhcCCCC
Confidence            567889999987543  333445677777776664  5777777665443 24578999999984 6666654 445688


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHh---CCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLL---GSKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~---~~~~~  169 (358)
                      +..+..++.+++.|+.++|..+++|+    +|||++.++.+||+|||+|..... ....+||+.|+|||++.   +..|+
T Consensus       153 ~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~-~~~~~gt~~y~aPE~~~~~~~~~~~  231 (348)
T 1u5q_A          153 EVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAP-ANSFVGTPYWMAPEVILAMDEGQYD  231 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSS-BCCCCSCGGGCCHHHHHTTSSCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeeCCCCHHHEEECCCCCEEEeeccCceecCC-CCcccCCcceeCHhhhccccCCCCC
Confidence            89999999999999999999999999    999999999999999999976654 34568999999999996   45689


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+.+      ....+..+..  +..|.                               
T Consensus       232 ~~~DiwslG~il~ell~g~~p~~~~~------~~~~~~~~~~--~~~~~-------------------------------  272 (348)
T 1u5q_A          232 GKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESPA-------------------------------  272 (348)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCCC-------------------------------
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHHh--cCCCC-------------------------------
Confidence            99999999999999999999996543      2222222221  11000                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ..+...+..+.+||.+||+.||++|||++++|+||||...
T Consensus       273 -------~~~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h~~~~~~  312 (348)
T 1u5q_A          273 -------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLRE  312 (348)
T ss_dssp             -------CCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHSC
T ss_pred             -------CCCCCCCHHHHHHHHHHcccChhhCcCHHHHhhChhhhcc
Confidence                   0112336788999999999999999999999999999753

>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=263.72  Aligned_cols=228  Identities=18%  Similarity=0.216  Sum_probs=168.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCcccccccc--
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDS--   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~--   92 (358)
                      .+|..||+|.+...  ......+.++.+...++. .|++++........     .....|+||||++||+|.+++...  
T Consensus        47 ~~~~~vaiK~~~~~--~~~~~~~~~e~~~l~~l~-~h~~i~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~  123 (326)
T 2x7f_A           47 KTGQLAAIKVMDVT--GDEEEEIKQEINMLKKYS-HHRNIATYYGAFIKKNPPGMDDQLWLVMEFCGAGSVTDLIKNTKG  123 (326)
T ss_dssp             TTCCEEEEEEEECC--SSTTHHHHHHHHHHHHHC-CSTTBCCEEEEEEECC--CCCCEEEEEEECCTTEEHHHHHHHSGG
T ss_pred             CCCCeEEEEEEecC--cccHHHHHHHHHHHHhcc-CCCCeeeeeeEEeeccCccccceEEEEEEcCCCCcHHHHHHhccc
Confidence            46778999988643  334556667766665542 56666666554322     246789999999999999998753  


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh-
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL-  164 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~-  164 (358)
                      ..+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   ....+||+.|+|||++. 
T Consensus       124 ~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~  203 (326)
T 2x7f_A          124 NTLKEEWIAYICREILRGLSHLHQHKVIHRDIKGQNVLLTENAEVKLVDFGVSAQLDRTVGRRNTFIGTPYWMAPEVIAC  203 (326)
T ss_dssp             GCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCTTTC-------------CCGGGCCHHHHC-
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCccccCCcHHHEEEcCCCCEEEeeCcCceecCcCccccccccCCccccChhhhcc
Confidence            457788899999999999999999999998    9999999999999999999765432   34457999999999997 


Q ss_pred             ----CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          165 ----GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       165 ----~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                          +..++.++|||||||++|+|++|..||.+..      ....+..+..  +..+.                      
T Consensus       204 ~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~~----------------------  253 (326)
T 2x7f_A          204 DENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMH------PMRALFLIPR--NPAPR----------------------  253 (326)
T ss_dssp             -------CCTTHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCCC----------------------
T ss_pred             ccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHhhc--Ccccc----------------------
Confidence                4568999999999999999999999996443      2222221111  00000                      


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                      ......+..+.+||.+||..||.+|||+.++++||||+..
T Consensus       254 ----------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  293 (326)
T 2x7f_A          254 ----------------LKSKKWSKKFQSFIESCLVKNHSQRPATEQLMKHPFIRDQ  293 (326)
T ss_dssp             ----------------CSCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHTSHHHHCC
T ss_pred             ----------------CCccccCHHHHHHHHHHhccChhhCCCHHHHhhChHHhhC
Confidence                            0122346788999999999999999999999999999864

>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*

Probab=100.00  E-value=2.3e-34  Score=257.90  Aligned_cols=223  Identities=14%  Similarity=0.128  Sum_probs=169.3

Q ss_pred             cCcccccccccCccchh-hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----ccc
Q 045353           21 SSASKENKSLYGDLTKN-QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----VVN   95 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----~~~   95 (358)
                      +|..+|+|.+....... ...++.++....... ..|++++....... .....|+||||++||+|.+++...    ..+
T Consensus        35 ~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  112 (289)
T 1x8b_A           35 DGCIYAIKRSKKPLAGSVDEQNALREVYAHAVL-GQHSHVVRYFSAWA-EDDHMLIQNEYCNGGSLADAISENYRIMSYF  112 (289)
T ss_dssp             TCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHS-CSCTTBCCEEEEEE-ETTEEEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred             CCceEEEEEecccccccHHHHHHHHHHHHHHHh-CCCCCeeeeeeeee-cCCeEEEEEEecCCCcHHHHHHhhcccccCC
Confidence            67889999988754433 345555555555543 26777777766543 345789999999999999998754    457


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-------------------CcEEEEecCCceecCCCCCCCc
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-------------------VQCKLVDFGNACWTHKQFTNDI  152 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-------------------~~vkL~DFG~a~~~~~~~~~~~  152 (358)
                      ++.++..++.+++.++.++|+.+++|+    +|||++.+                   ..+||+|||++...... ....
T Consensus       113 ~~~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~~~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~  191 (289)
T 1x8b_A          113 KEAELKDLLLQVGRGLRYIHSMSLVHMDIKPSNIFISRTSIPNAASEEGDEDDWASNKVMFKIGDLGHVTRISSP-QVEE  191 (289)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEC--------------------CCCEEECCCTTCEETTCS-CCCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHhCCEeecCCCHHHEEEcCCCCCcccccccccccccCCceEEEEcccccccccCCc-cccC
Confidence            889999999999999999999999999    99999844                   47999999999876543 3457


Q ss_pred             cCCCcchhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh
Q 045353          153 QTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF  231 (358)
Q Consensus       153 gt~~Y~aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  231 (358)
                      ||+.|+|||++.+. .++.++|||||||++|+|++|.+++...         .....+..  +.                
T Consensus       192 gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~---------~~~~~~~~--~~----------------  244 (289)
T 1x8b_A          192 GDSRFLANEVLQENYTHLPKADIFALALTVVCAAGAEPLPRNG---------DQWHEIRQ--GR----------------  244 (289)
T ss_dssp             CCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTCCCCCSSS---------HHHHHHHT--TC----------------
T ss_pred             CCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcCCCCCcch---------hHHHHHHc--CC----------------
Confidence            99999999999886 4678999999999999999998876421         11111110  00                


Q ss_pred             hccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                             ....+...+..+.+||.+||+.||++|||+.|+|+||||...
T Consensus       245 -----------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  286 (289)
T 1x8b_A          245 -----------------------LPRIPQVLSQEFTELLKVMIHPDPERRPSAMALVKHSVLLSA  286 (289)
T ss_dssp             -----------------------CCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTCTTC---
T ss_pred             -----------------------CCCCCcccCHHHHHHHHHHhCCCcccCCCHHHHhhChHhhhh
Confidence                                   012233457789999999999999999999999999999864

>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*

Probab=100.00  E-value=2.5e-34  Score=262.49  Aligned_cols=229  Identities=17%  Similarity=0.178  Sum_probs=169.9

Q ss_pred             ccCcccccccccCccc-------hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           20 ESSASKENKSLYGDLT-------KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      .+|..||+|.+.....       ......+.++.+...++  .|++++.+......  ...|+||||++||+|.+++...
T Consensus        33 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~--~~~~lv~e~~~~~~L~~~~~~~  108 (322)
T 2ycf_A           33 KTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKL--NHPCIIKIKNFFDA--EDYYIVLELMEGGELFDKVVGN  108 (322)
T ss_dssp             TTTEEEEEEEECC---------------CHHHHHHHHHHC--CCTTBCCEEEEEES--SSEEEEEECCTTEETHHHHSTT
T ss_pred             CCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhC--CCCCCceEeeEEcC--CceEEEEecCCCCcHHHHHhcc
Confidence            4567899998875432       22334566666666653  67777776655433  3489999999999999999887


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecCCC--CCCCccCCCcchhHHH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l  163 (358)
                      ..+++..+..++.+++.++.++|+.+++|+    +|||++.++.   +||+|||++......  ....+||+.|+|||++
T Consensus       109 ~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~  188 (322)
T 2ycf_A          109 KRLKEATCKLYFYQMLLAVQYLHENGIIHRDLKPENVLLSSQEEDCLIKITDFGHSKILGETSLMRTLCGTPTYLAPEVL  188 (322)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSSSCCEEECCCTTCEECCCCHHHHHHHSCCTTCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCeeccCCCHHHEEEecCCCCCeEEEccCccceecccccccccccCCcCccCchhh
Confidence            888999999999999999999999999998    9999987654   999999999876533  2334789999999998


Q ss_pred             h---CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          164 L---GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       164 ~---~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .   +..++.++|||||||++|+|++|..||.......     .....+........+                      
T Consensus       189 ~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~~~~~~~~~~~~~~----------------------  241 (322)
T 2ycf_A          189 VSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRTQV-----SLKDQITSGKYNFIP----------------------  241 (322)
T ss_dssp             HHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTCSS-----CHHHHHHHTCCCCCH----------------------
T ss_pred             ccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchHH-----HHHHHHHhCccccCc----------------------
Confidence            5   3568999999999999999999999997543211     011111110000000                      


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                      ..+...+..+.+||.+||..||++|||+.++|+||||+.
T Consensus       242 ----------------~~~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~h~~~~~  280 (322)
T 2ycf_A          242 ----------------EVWAEVSEKALDLVKKLLVVDPKARFTTEEALRHPWLQD  280 (322)
T ss_dssp             ----------------HHHTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGCC
T ss_pred             ----------------hhhhhcCHHHHHHHHHHcccCHhhCCCHHHHhhCcCcCC
Confidence                            011234678899999999999999999999999999984

>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*

Probab=100.00  E-value=9.5e-35  Score=267.98  Aligned_cols=245  Identities=16%  Similarity=0.150  Sum_probs=178.8

Q ss_pred             cCcccccccccCccchhhh----------------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCC
Q 045353           21 SSASKENKSLYGDLTKNQK----------------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVS   84 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~   84 (358)
                      +|..+|+|.+.........                ..+.++.+...++  .|++++........ ....|+||||++||+
T Consensus        53 ~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~  129 (348)
T 2pml_X           53 DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDI--KNEYCLTCEGIITN-YDEVYIIYEYMENDS  129 (348)
T ss_dssp             TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTC--CCTTBCCCSEEEES-SSEEEEEEECCTTCB
T ss_pred             CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhC--CCCCcceEEEEEee-CCeEEEEEeccCCCc
Confidence            7888999988765443322                6777777777664  57777776665433 457899999999999


Q ss_pred             cccc------ccc--ccccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecC-CCCCC
Q 045353           85 VEER------QND--SVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTH-KQFTN  150 (358)
Q Consensus        85 L~~~------~~~--~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~-~~~~~  150 (358)
                      |.++      +..  ...+++..+..++.+++.++.++|+ .+++|+    +|||++.++.+||+|||++.... .....
T Consensus       130 L~~~~~~~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~  209 (348)
T 2pml_X          130 ILKFDEYFFVLDKNYTCFIPIQVIKCIIKSVLNSFSYIHNEKNICHRDVKPSNILMDKNGRVKLSDFGESEYMVDKKIKG  209 (348)
T ss_dssp             SSEESSSEESSCSSSCCCCCHHHHHHHHHHHHHHHHHHHHTSCEECCCCCGGGEEECTTSCEEECCCTTCEECBTTEECS
T ss_pred             HHHHHHHhhhhhhccccCCCHHHHHHHHHHHHHHHHHHhccCCEeecCCChHhEEEcCCCcEEEeccccccccccccccC
Confidence            9998      665  5678889999999999999999998 999998    99999999999999999997653 33456


Q ss_pred             CccCCCcchhHHHhCC-CCCc-chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCCh
Q 045353          151 DIQTRQYRCPEVLLGS-KYST-SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSR  228 (358)
Q Consensus       151 ~~gt~~Y~aPE~l~~~-~~~~-~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~  228 (358)
                      ..||+.|+|||++.+. .++. ++|||||||++|+|++|..||.+...     .......+.......|....       
T Consensus       210 ~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~i~~~~~~~~~~~~-------  277 (348)
T 2pml_X          210 SRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVMFYNVVPFSLKIS-----LVELFNNIRTKNIEYPLDRN-------  277 (348)
T ss_dssp             SCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHHHHSSCSSCCSSC-----SHHHHHHHTSCCCCCCCSSS-------
T ss_pred             CCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHHHhCCCCCCCCCc-----HHHHHHHHhccCcCCccchh-------
Confidence            6899999999999987 5666 99999999999999999999975542     12222222111001110000       


Q ss_pred             hhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          229 DFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      .+....              ..  ..........+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       278 ~~~~~~--------------~~--~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~e~l~hp~f~~~  329 (348)
T 2pml_X          278 HFLYPL--------------TN--KKSTCSNNFLSNEDIDFLKLFLRKNPAERITSEDALKHEWLADT  329 (348)
T ss_dssp             SSTTTT--------------CC----------CCCHHHHHHHHHHCCSSGGGSCCHHHHHTSGGGTTC
T ss_pred             hhhccc--------------cc--cccccchhhcCHHHHHHHHHHccCChhhCCCHHHHhcCccccCC
Confidence            000000              00  00001123456789999999999999999999999999999863

>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A

Probab=100.00  E-value=2.1e-34  Score=258.82  Aligned_cols=228  Identities=17%  Similarity=0.189  Sum_probs=160.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc----ccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN----DSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~----~~~~~   95 (358)
                      .+|..+|+|.+..........+..++....... ..+++++....... .....|+||||++| +|.+++.    ....+
T Consensus        30 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~iv~~~~~~~-~~~~~~lv~e~~~~-~l~~~l~~~~~~~~~~  106 (290)
T 3fme_A           30 PSGQIMAVKRIRATVNSQEQKRLLMDLDISMRT-VDCPFTVTFYGALF-REGDVWICMELMDT-SLDKFYKQVIDKGQTI  106 (290)
T ss_dssp             TTTEEEEEEEEC---CHHHHHHHHHHHHHHHTT-CCCTTBCCEEEEEE-CSSSEEEEEECCSE-EHHHHHHHHHHTTCCC
T ss_pred             CCCeEEEEEEeecccCcHHHHHHHHHHHHHHHh-CCCCeEEEEeeeee-ccCCEEEEEehhcc-chHHHHHHHHhcCCCC
Confidence            467789999998776555554444444433333 46777777766544 34578999999985 7666554    34568


Q ss_pred             ChhhhhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHH----h
Q 045353           96 NESSRDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVL----L  164 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l----~  164 (358)
                      ++..+..++.+++.++.++|+. +++|+    +|||++.++.+||+|||+|......  .....||+.|+|||++    .
T Consensus       107 ~~~~~~~i~~qi~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  186 (290)
T 3fme_A          107 PEDILGKIAVSIVKALEHLHSKLSVIHRDVKPSNVLINALGQVKMCDFGISGYLVDDVAKDIDAGCKPYMAPERINPELN  186 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSCCCCCCCSGGGCEECTTCCEEBCCC---------------CCCCCCSCHHHHSCCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHhhcCCeecCCCCHHHEEECCCCCEEEeecCCcccccccccccccCCCccccChhhcChhhc
Confidence            8899999999999999999998 99999    9999999999999999999765433  2334799999999997    4


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..++.++||||+||++|+|++|..||.....     ....+..+...  ..+                           
T Consensus       187 ~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~--~~~---------------------------  232 (290)
T 3fme_A          187 QKGYSVKSDIWSLGITMIELAILRFPYDSWGT-----PFQQLKQVVEE--PSP---------------------------  232 (290)
T ss_dssp             C--CCHHHHHHHHHHHHHHHHHTSCSSCCCSC-----HHHHHHHHHHS--CCC---------------------------
T ss_pred             CcCCCcHHHHHHHHHHHHHHHHCCCCccccCc-----hHHHHHHHhcc--CCC---------------------------
Confidence            45689999999999999999999999964331     22222222111  000                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                 .......++.+.+||.+||+.||++|||+.|+++||||+.
T Consensus       233 -----------~~~~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~hp~f~~  272 (290)
T 3fme_A          233 -----------QLPADKFSAEFVDFTSQCLKKNSKERPTYPELMQHPFFTL  272 (290)
T ss_dssp             -----------CCCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             -----------CcccccCCHHHHHHHHHHhhcChhhCcCHHHHHhCccccc
Confidence                       0011234678999999999999999999999999999975

>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*

Probab=100.00  E-value=1.1e-34  Score=262.18  Aligned_cols=236  Identities=22%  Similarity=0.263  Sum_probs=159.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--------   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--------   91 (358)
                      .+|..||+|.+..........++.++.+...+  ..|++++........ ....|+||||++||+|.+++..        
T Consensus        38 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  114 (303)
T 2vwi_A           38 PKKEKVAIKRINLEKCQTSMDELLKEIQAMSQ--CHHPNIVSYYTSFVV-KDELWLVMKLLSGGSVLDIIKHIVAKGEHK  114 (303)
T ss_dssp             ---CEEEEECCC----------------CCCC--CCCTTBCCEEEEEES-SSCEEEEEECCTTCBHHHHHHHHHHTTTTT
T ss_pred             CCCcEEEEEEEEhhhcchhHHHHHHHHHHHhh--cCCCCEeeEEEEEee-cCCcEEEehhccCCchHHHHHHHhhccccc
Confidence            36778999998776655555666666555544  357777776654433 3468999999999999998863        


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------CCCCccCCCcch
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------FTNDIQTRQYRC  159 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------~~~~~gt~~Y~a  159 (358)
                      ...+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......        .....||+.|+|
T Consensus       115 ~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~y~a  194 (303)
T 2vwi_A          115 SGVLDESTIATILREVLEGLEYLHKNGQIHRDVKAGNILLGEDGSVQIADFGVSAFLATGGDITRNKVRKTFVGTPCWMA  194 (303)
T ss_dssp             TCSSCHHHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTCCEEECCCHHHHHCC---------------CCCTTCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhCCCCCCCCChhhEEEcCCCCEEEEeccchheeccCCCccchhhhcccCCCccccC
Confidence            4457889999999999999999999999999    9999999999999999998654321        234579999999


Q ss_pred             hHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          160 PEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       160 PE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      ||++.+ ..++.++|||||||++|+|++|..||.....      ...+..  ...+..+. ..                 
T Consensus       195 PE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~------~~~~~~--~~~~~~~~-~~-----------------  248 (303)
T 2vwi_A          195 PEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPP------MKVLML--TLQNDPPS-LE-----------------  248 (303)
T ss_dssp             HHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCG------GGHHHH--HHTSSCCC-TT-----------------
T ss_pred             HHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCch------hhHHHH--HhccCCCc-cc-----------------
Confidence            999986 4689999999999999999999999975431      111111  11111100 00                 


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                  ............+..+.+||.+||+.||.+|||+.++++||||+..
T Consensus       249 ------------~~~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  294 (303)
T 2vwi_A          249 ------------TGVQDKEMLKKYGKSFRKMISLCLQKDPEKRPTAAELLRHKFFQKA  294 (303)
T ss_dssp             ------------C-----CCCCCCCHHHHHHHHHHCCSSGGGSCCHHHHHTSTTC---
T ss_pred             ------------cccccchhhhhhhHHHHHHHHHHccCChhhCcCHHHHhhChhhhcC
Confidence                        0000111223446789999999999999999999999999999864

>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A

Probab=100.00  E-value=7.4e-34  Score=264.42  Aligned_cols=222  Identities=17%  Similarity=0.194  Sum_probs=175.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      .++..||+|.+..........++.++.+....+. .|++++.+...... ...+|+||||++||+|.+++....      
T Consensus       111 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hpnIv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~  188 (370)
T 2psq_A          111 KEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-KHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLRARRPPGMEY  188 (370)
T ss_dssp             TCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSC-CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHTCCC----
T ss_pred             CcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhc-CCCCEeeEEEEEcc-CCCEEEEEEcCCCCCHHHHHHhhCCccccc
Confidence            3455799999998877777778888877776642 67788887765443 467899999999999999886432      


Q ss_pred             ----------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           94 ----------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        94 ----------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                                .++..++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....     .....+|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~t  268 (370)
T 2psq_A          189 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP  268 (370)
T ss_dssp             -------CCCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCSSCEETTCCCTTCTTTTTTSC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeccccchhhEEECCCCCEEEccccCCcccCcccceecccCCCcc
Confidence                      36778889999999999999999999999    9999999999999999999865432     2334678


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+..|+.++|||||||++|+|++ |..||.+...      ......+..  +.                  
T Consensus       269 ~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p~~~~~~------~~~~~~~~~--~~------------------  322 (370)
T 2psq_A          269 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPV------EELFKLLKE--GH------------------  322 (370)
T ss_dssp             GGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHT--TC------------------
T ss_pred             cceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCCCCCCH------HHHHHHHhc--CC------------------
Confidence            89999999999999999999999999999999 9999975431      111111110  00                  


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ....+..++..+.+||.+||+.||.+|||+.|++++
T Consensus       323 ---------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~  358 (370)
T 2psq_A          323 ---------------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  358 (370)
T ss_dssp             ---------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                 112334557789999999999999999999999864

>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*

Probab=100.00  E-value=1.1e-34  Score=258.76  Aligned_cols=226  Identities=19%  Similarity=0.226  Sum_probs=169.4

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+++|.+.....  .....++.++.+....  ..|++++.+...... ....|+||||++|++|.+++.....+++
T Consensus        34 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~  110 (276)
T 2h6d_A           34 LTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKL--FRHPHIIKLYQVIST-PTDFFMVMEYVSGGELFDYICKHGRVEE  110 (276)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT--CCCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHCSCCH
T ss_pred             CCCceEEEEEeccccccchhHHHHHHHHHHHHhc--CCCCCEeEEEEEEec-CCeEEEEEeccCCCcHHHHHhccCCCCH
Confidence            3677899998865432  2334566666666655  356777776655433 4578999999999999999987777889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCC-Cc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKY-ST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~-~~  170 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......  .....||+.|+|||++.+..+ +.
T Consensus       111 ~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~l~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  190 (276)
T 2h6d_A          111 MEARRLFQQILSAVDYCHRHMVVHRDLKPENVLLDAHMNAKIADFGLSNMMSDGEFLRTSCGSPNYAAPEVISGRLYAGP  190 (276)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSSCCCCCGGGEEECTTSCEEECCCCGGGCCCC-------------CCTGGGTTSCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCChhhEEECCCCCEEEeecccccccCCCcceecccCCccccCHHHHcCCCCCCc
Confidence            9999999999999999999999998    9999999999999999999765432  345578999999999998775 68


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||....      .......+..                                       
T Consensus       191 ~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~---------------------------------------  225 (276)
T 2h6d_A          191 EVDIWSCGVILYALLCGTLPFDDEH------VPTLFKKIRG---------------------------------------  225 (276)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH---------------------------------------
T ss_pred             cchHHHHHHHHHHHHhCCCCCCCCc------HHHHHHHhhc---------------------------------------
Confidence            9999999999999999999996432      1222211111                                       


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         .....+...+..+.+||.+||+.||.+|||+.++++||||+..
T Consensus       226 ---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h~~~~~~  268 (276)
T 2h6d_A          226 ---GVFYIPEYLNRSVATLLMHMLQVDPLKRATIKDIREHEWFKQD  268 (276)
T ss_dssp             ---CCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHTT
T ss_pred             ---CcccCchhcCHHHHHHHHHHccCChhhCCCHHHHHhChhhccC
Confidence               0112233446788999999999999999999999999999864

>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*

Probab=100.00  E-value=4.6e-34  Score=258.43  Aligned_cols=226  Identities=18%  Similarity=0.209  Sum_probs=180.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|.+..........++.++.+.....  .+++++....... .....|+||||++|++|.+++.. ..+++..
T Consensus        45 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~~~~-~~~~~~~  120 (303)
T 3a7i_A           45 RTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQC--DSPYVTKYYGSYL-KDTKLWIIMEYLGGGSALDLLEP-GPLDETQ  120 (303)
T ss_dssp             TTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHC--CCTTBCCEEEEEE-ETTEEEEEEECCTTEEHHHHHTT-SCCCHHH
T ss_pred             CCCcEEEEEEecccccHHHHHHHHHHHHHHHhC--CCCCEeEEEEEEe-cCCeEEEEEEeCCCCcHHHHHhc-CCCCHHH
Confidence            467789999998777667777888887777663  5666766665443 24568999999999999998865 4578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..++.+++.++.++|..+++|+    +|||++.++.+||+|||++......   .....||+.|+|||++.+..++.++
T Consensus       121 ~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  200 (303)
T 3a7i_A          121 IATILREILKGLDYLHSEKKIHRDIKAANVLLSEHGEVKLADFGVAGQLTDTQIKRNTFVGTPFWMAPEVIKQSAYDSKA  200 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECBTTBCCBCCCCSCGGGCCHHHHTTCCBCTHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCccCCCChheEEECCCCCEEEeecccceecCccccccCccCCCcCccCHHHHhcCCCCchh
Confidence            99999999999999999999998    9999999999999999999765432   3455799999999999998999999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|..||....      .......+..  +..                                    
T Consensus       201 Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~------------------------------------  236 (303)
T 3a7i_A          201 DIWSLGITAIELARGEPPHSELH------PMKVLFLIPK--NNP------------------------------------  236 (303)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCC------------------------------------
T ss_pred             hhHHHHHHHHHHccCCCCCCCcC------HHHHHHHhhc--CCC------------------------------------
Confidence            99999999999999999996433      2222211111  000                                    


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                         ...+...+..+.+||.+||..||.+|||+.++++||||...
T Consensus       237 ---~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~  277 (303)
T 3a7i_A          237 ---PTLEGNYSKPLKEFVEACLNKEPSFRPTAKELLKHKFILRN  277 (303)
T ss_dssp             ---CCCCSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCHHHHHH
T ss_pred             ---CCCccccCHHHHHHHHHHcCCChhhCcCHHHHhhChhhhcC
Confidence               01223446789999999999999999999999999999753

>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}

Probab=100.00  E-value=5e-34  Score=259.46  Aligned_cols=227  Identities=21%  Similarity=0.226  Sum_probs=175.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~   98 (358)
                      .+|..+|+|.+....   ...++.++.+...++  .+++++........ ....|+||||++||+|.+++. ....+++.
T Consensus        52 ~~~~~vaiK~~~~~~---~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~~  125 (314)
T 3com_A           52 ETGQIVAIKQVPVES---DLQEIIKEISIMQQC--DSPHVVKYYGSYFK-NTDLWIVMEYCGAGSVSDIIRLRNKTLTED  125 (314)
T ss_dssp             TTCCEEEEEEEETTS---CCHHHHHHHHHHHTC--CCTTBCCEEEEEEE-TTEEEEEEECCTTEEHHHHHHHHTCCCCHH
T ss_pred             CCCCEEEEEecCchH---HHHHHHHHHHHHHhC--CCCCCccEEEEEEe-CCEEEEEeecCCCCCHHHHHHhcCCCCCHH
Confidence            457789999886532   345566666666653  56777766654432 456899999999999999886 34568889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCCCCcc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....||+.|+|||++.+..++.+
T Consensus       126 ~~~~i~~~i~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  205 (314)
T 3com_A          126 EIATILQSTLKGLEYLHFMRKIHRDIKAGNILLNTEGHAKLADFGVAGQLTDTMAKRNTVIGTPFWMAPEVIQEIGYNCV  205 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECBTTBSCBCCCCSCGGGCCHHHHSSSCBCTT
T ss_pred             HHHHHHHHHHHHHHHHHhCCCcCCCcCHHHEEECCCCCEEEeecccchhhhhhccccCccCCCCCccChhhcCCCCCCcc
Confidence            999999999999999999999988    9999999999999999999765432   345579999999999999889999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|+|++|..||....      ....+..+..  +..+                                  
T Consensus       206 ~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~----------------------------------  243 (314)
T 3com_A          206 ADIWSLGITAIEMAEGKPPYADIH------PMRAIFMIPT--NPPP----------------------------------  243 (314)
T ss_dssp             HHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCC----------------------------------
T ss_pred             ccHHHHHHHHHHHHhCCCCCCCCC------hHHHHHHHhc--CCCc----------------------------------
Confidence            999999999999999999996433      1221111110  0000                                  


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                         .+..+...+..+.+||.+||..||.+|||+.++|+||||+...
T Consensus       244 ---~~~~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~~~~~~~~~  286 (314)
T 3com_A          244 ---TFRKPELWSDNFTDFVKQCLVKSPEQRATATQLLQHPFVRSAK  286 (314)
T ss_dssp             ---CCSSGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHTCC
T ss_pred             ---ccCCcccCCHHHHHHHHHHccCChhhCcCHHHHHhCHHHhcCC
Confidence               0112233467899999999999999999999999999998653

>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}

Probab=100.00  E-value=5.8e-34  Score=260.56  Aligned_cols=220  Identities=15%  Similarity=0.183  Sum_probs=176.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      +.+..||+|.+....+...++++.++.+...++  .|++++.+..... .....|+||||++||+|.+++... ..+++.
T Consensus        75 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  151 (325)
T 3kul_A           75 QRDVPVAIKALKAGYTERQRRDFLSEASIMGQF--DHPNIIRLEGVVT-RGRLAMIVTEYMENGSLDTFLRTHDGQFTIM  151 (325)
T ss_dssp             SCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEC-GGGCCEEEEECCTTCBHHHHHHTTTTCSCHH
T ss_pred             CCCceEEEEecCCCCCHHHHHHHHHHHHHHHhC--CCCCCCcEEEEEE-eCCccEEEeeCCCCCcHHHHHHhcccCCCHH
Confidence            345569999999988888888999988887774  5778887776654 345789999999999999998643 568889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|+.....      .....+|+.|+|||++.+..+
T Consensus       152 ~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~  231 (325)
T 3kul_A          152 QLVGMLRGVGAGMRYLSDLGYVHRDLAARNVLVDSNLVCKVSDFGLSRVLEDDPDAAYTTTGGKIPIRWTAPEAIAFRTF  231 (325)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCSSCEECC----CCEECC---CCGGGSCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEECCCCCEEECCCCcccccccCccceeeccCCCCcccccCHhHhcCCCC
Confidence            999999999999999999999999    9999999999999999999875432      223356778999999999889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||.+..      .......+....                                  
T Consensus       232 ~~~~Di~slG~il~ell~~g~~p~~~~~------~~~~~~~~~~~~----------------------------------  271 (325)
T 3kul_A          232 SSASDVWSFGVVMWEVLAYGERPYWNMT------NRDVISSVEEGY----------------------------------  271 (325)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTSC------HHHHHHHHHTTC----------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999999 999996543      222222222110                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+..++..+.+||.+||..||.+|||+.++++
T Consensus       272 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~  306 (325)
T 3kul_A          272 -------RLPAPMGCPHALHQLMLDCWHKDRAQRPRFSQIVS  306 (325)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------CCCCCCCcCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                   11223445778999999999999999999999976

>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}

Probab=100.00  E-value=1.1e-33  Score=257.32  Aligned_cols=255  Identities=21%  Similarity=0.247  Sum_probs=180.6

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-------------CCCCCCCcccccCCCCCccc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-------------PSSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~iv~e~~~gg~L~~   87 (358)
                      +|..||+|.+... .....+++.++.+...++  .|++++.......             ......|+||||++ |+|.+
T Consensus        35 ~~~~vaiK~~~~~-~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~  110 (320)
T 2i6l_A           35 CDKRVAIKKIVLT-DPQSVKHALREIKIIRRL--DHDNIVKVFEILGPSGSQLTDDVGSLTELNSVYIVQEYME-TDLAN  110 (320)
T ss_dssp             TTEEEEEEEEECC-SHHHHHHHHHHHHHHHTC--CCTTBCCEEEEECTTSCBCCC----CCSCSEEEEEEECCS-EEHHH
T ss_pred             CCeEEEEEEEecC-ChHHHHHHHHHHHHHHhc--CCCCeeEEEEeccccccccccccccccccCceeEEeeccC-CCHHH
Confidence            4778999987643 344456667777666664  5677776654321             23466799999998 58998


Q ss_pred             ccccccccChhhhhHHHHhhhhccccccCCCCCCc----cccccc-CCCcEEEEecCCceecCC------CCCCCccCCC
Q 045353           88 RQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-VDVQCKLVDFGNACWTHK------QFTNDIQTRQ  156 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-~~~~vkL~DFG~a~~~~~------~~~~~~gt~~  156 (358)
                      ++.. ..+++..+..++.+++.++.++|+.+++|+    +|||++ .++.+||+|||++.....      ......+|+.
T Consensus       111 ~~~~-~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~  189 (320)
T 2i6l_A          111 VLEQ-GPLLEEHARLFMYQLLRGLKYIHSANVLHRDLKPANLFINTEDLVLKIGDFGLARIMDPHYSHKGHLSEGLVTKW  189 (320)
T ss_dssp             HHTT-CCCCHHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTTEEEECCCTTCBCC--------CCCGGGSCCT
T ss_pred             Hhhc-CCccHHHHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEEcCCCCeEEEccCccccccCCCccccccccccccccc
Confidence            8865 457788899999999999999999999999    999997 567999999999976532      1234467999


Q ss_pred             cchhHHHhC-CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          157 YRCPEVLLG-SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       157 Y~aPE~l~~-~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      |+|||++.+ ..++.++|||||||++|+|++|+.||.+..      ....+..+....+................+    
T Consensus       190 y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----  259 (320)
T 2i6l_A          190 YRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAH------ELEQMQLILESIPVVHEEDRQELLSVIPVY----  259 (320)
T ss_dssp             TCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHSCCCCHHHHHHHHTTSCHH----
T ss_pred             ccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCchhhhhhhhhcCccc----
Confidence            999999987 568999999999999999999999997654      455666666655544432211000000000    


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                          .......+..    .........+..+.+||.+||+.||++|||++|+|+||||+....
T Consensus       260 ----~~~~~~~~~~----~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~~~  314 (320)
T 2i6l_A          260 ----IRNDMTEPHK----PLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALSHPYMSIYSF  314 (320)
T ss_dssp             ----HHHHTTSCCC----CHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHTSHHHHTTCC
T ss_pred             ----ccccccCCCC----ChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhCCcccccccC
Confidence                0000000000    000122345788999999999999999999999999999987544

>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}

Probab=100.00  E-value=9.2e-34  Score=255.23  Aligned_cols=228  Identities=17%  Similarity=0.182  Sum_probs=171.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc---cccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS---VVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~---~~~~   96 (358)
                      .+|..||+|.+...- ......+.++.+....+  .|++++....... .....|+||||++||+|.+++...   ....
T Consensus        45 ~~~~~vaiK~~~~~~-~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  120 (295)
T 2clq_A           45 SNQVRIAIKEIPERD-SRYSQPLHEEIALHKHL--KHKNIVQYLGSFS-ENGFIKIFMEQVPGGSLSALLRSKWGPLKDN  120 (295)
T ss_dssp             TTCCEEEEEEEECCC-C---HHHHHHHHHHHTC--CCTTBCCEEEEEE-ETTEEEEEEECCSEEEHHHHHHHTTCCCTTC
T ss_pred             CCCeEEEEEEccCCc-hHHHHHHHHHHHHHHhC--CCCCEeeEeeEEE-eCCcEEEEEEeCCCCCHHHHHHhhccCCCcc
Confidence            456788999887653 33445666776666653  5777777665443 345789999999999999988753   2456


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCCC-
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +..+..++.+++.++.++|+.+++|+    +|||++. ++.+||+|||++......   .....||+.|+|||++.+.. 
T Consensus       121 ~~~~~~~~~qi~~~l~~lH~~~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  200 (295)
T 2clq_A          121 EQTIGFYTKQILEGLKYLHDNQIVHRDIKGDNVLINTYSGVLKISDFGTSKRLAGINPCTETFTGTLQYMAPEIIDKGPR  200 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTCCEEECCTTTCEESCC-----CCCCCCGGGCCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEEccCCChhhEEEECCCCCEEEeecccccccCCCCCcccccCCCccccChhhhcCCCC
Confidence            77888899999999999999999998    9999987 899999999999765432   34557999999999998754 


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++|||||||++|+|++|..||.....     ....... ......                               
T Consensus       201 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~-~~~~~~-------------------------------  243 (295)
T 2clq_A          201 GYGKAADIWSLGCTIIEMATGKPPFYELGE-----PQAAMFK-VGMFKV-------------------------------  243 (295)
T ss_dssp             GCSHHHHHHHHHHHHHHHHHTSCTTGGGSS-----HHHHHHH-HHHHCC-------------------------------
T ss_pred             CCCcHHHHHHHHHHHHHHHHCCCCccCCCc-----hhHHHHh-hccccc-------------------------------
Confidence             89999999999999999999999964321     1111111 011110                               


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ....+...+..+.+||.+||+.||++|||+.++|+||||+..
T Consensus       244 --------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~~~~~~~~  285 (295)
T 2clq_A          244 --------HPEIPESMSAEAKAFILKCFEPDPDKRACANDLLVDEFLKVS  285 (295)
T ss_dssp             --------CCCCCTTSCHHHHHHHHHTTCSSTTTSCCHHHHHTSGGGCC-
T ss_pred             --------cccccccCCHHHHHHHHHHccCChhhCCCHHHHhcChhhhhc
Confidence                    112334457789999999999999999999999999999864

>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*

Probab=100.00  E-value=6.4e-35  Score=268.17  Aligned_cols=230  Identities=21%  Similarity=0.220  Sum_probs=147.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC---CCCCCCcccccCCCCCccccccccc--c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP---SSPDNFSVDTIPNGVSVEERQNDSV--V   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~e~~~gg~L~~~~~~~~--~   94 (358)
                      .+|..+|+|.+...      .+..++.....+. ..+++++.+......   ....+|+|||||+||+|.+++....  .
T Consensus        52 ~~~~~vavK~~~~~------~~~~~e~~~~~~~-~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~gg~L~~~l~~~~~~~  124 (336)
T 3fhr_A           52 RTGQKCALKLLYDS------PKARQEVDHHWQA-SGGPHIVCILDVYENMHHGKRCLLIIMECMEGGELFSRIQERGDQA  124 (336)
T ss_dssp             TTCCEEEEEEEESS------HHHHHHHHHHHHH-TTSTTBCCEEEEEEEEETTEEEEEEEEECCTTEEHHHHHHTC-CCC
T ss_pred             CCCCEEEEEEecCc------HHHHHHHHHHHHh-cCCCChHHHHHHHhhccCCCceEEEEEeccCCCCHHHHHHhcCCCC
Confidence            35778999988542      1222222222222 355666655554332   3445899999999999999987653  5


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +++.++..++.+++.++.++|+.+++|+    +|||++.   ++.+||+|||++..... .....+||+.|+|||++.+.
T Consensus       125 l~~~~~~~i~~ql~~~l~~LH~~~ivH~dlkp~NIll~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~t~~y~aPE~~~~~  204 (336)
T 3fhr_A          125 FTEREAAEIMRDIGTAIQFLHSHNIAHRDVKPENLLYTSKEKDAVLKLTDFGFAKETTQNALQTPCYTPYYVAPEVLGPE  204 (336)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEESCSSTTCCEEECCCTTCEEC----------------------C
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCeecCCCCHHHEEEEecCCCceEEEeccccceeccccccccCCCCcCccChhhhCCC
Confidence            8899999999999999999999999999    9999986   45599999999976543 34556889999999999888


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||.+........  .....+.......                              
T Consensus       205 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~--~~~~~~~~~~~~~------------------------------  252 (336)
T 3fhr_A          205 KYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISP--GMKRRIRLGQYGF------------------------------  252 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCC-----------------------CC------------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhh--hHHHhhhcccccc------------------------------
Confidence            89999999999999999999999997544221100  0000000000000                              


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                              ........+..+.+||.+||+.||.+|||+.|+|+||||+..
T Consensus       253 --------~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~hp~~~~~  294 (336)
T 3fhr_A          253 --------PNPEWSEVSEDAKQLIRLLLKTDPTERLTITQFMNHPWINQS  294 (336)
T ss_dssp             --------CTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHSHHHHTG
T ss_pred             --------CchhhccCCHHHHHHHHHHCCCChhHCcCHHHHhcCcccccc
Confidence                    001123457789999999999999999999999999999864

>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*

Probab=100.00  E-value=9.7e-34  Score=256.04  Aligned_cols=227  Identities=19%  Similarity=0.191  Sum_probs=169.0

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      +|..+++|.+... +.....++.++.+....  ..|++++.+...... ....|+||||++||+|.+++.. ...+++..
T Consensus        43 ~~~~~aiK~~~~~-~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~l~~~~~~~~~~~~~~~  118 (302)
T 2j7t_A           43 TGALAAAKVIETK-SEEELEDYIVEIEILAT--CDHPYIVKLLGAYYH-DGKLWIMIEFCPGGAVDAIMLELDRGLTEPQ  118 (302)
T ss_dssp             TCCEEEEEEEC-----CCHHHHHHHHHHHHH--CCCTTBCCEEEEEEC-C-CEEEEEECCTTEEHHHHHHHHTSCCCHHH
T ss_pred             CCcEEEEEEecCC-CHHHHHHHHHHHHHHhc--CCCCCEeeeeeeeee-CCeEEEEEEeCCCCcHHHHHHhhccCCCHHH
Confidence            4778899988754 23345566677666655  367777776655433 4578999999999999998764 45588899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHh-----CCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLL-----GSK  167 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~-----~~~  167 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++....   .......||+.|+|||++.     +..
T Consensus       119 ~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  198 (302)
T 2j7t_A          119 IQVVCRQMLEALNFLHSKRIIHRDLKAGNVLMTLEGDIRLADFGVSAKNLKTLQKRDSFIGTPYWMAPEVVMCETMKDTP  198 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEECTTSCEEECCCHHHHHHHHHHHC-----CCGGGCCHHHHHHHHTTSTT
T ss_pred             HHHHHHHHHHHHHHHhcCCcccCCCCHHHEEECCCCCEEEEECCCCccccccccccccccCChhhcCCeeeccccCCCCC
Confidence            99999999999999999999999    99999999999999999875422   1234457999999999994     566


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||...+      ....+..+..  +..+                              
T Consensus       199 ~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~~~~--~~~~------------------------------  240 (302)
T 2j7t_A          199 YDYKADIWSLGITLIEMAQIEPPHHELN------PMRVLLKIAK--SDPP------------------------------  240 (302)
T ss_dssp             TTTHHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCC------------------------------
T ss_pred             CchhhhHHHHHHHHHHHhcCCCCCccCC------HHHHHHHHhc--cCCc------------------------------
Confidence            8999999999999999999999997543      2222222111  1000                              


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             ....+...+..+.+||.+||..||.+|||+.++++||||+..
T Consensus       241 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~~  282 (302)
T 2j7t_A          241 -------TLLTPSKWSVEFRDFLKIALDKNPETRPSAAQLLEHPFVSSI  282 (302)
T ss_dssp             -------CCSSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTTSTTTTTC
T ss_pred             -------ccCCccccCHHHHHHHHHHcccChhhCCCHHHHhcChHHhhh
Confidence                   001123446789999999999999999999999999999863

>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...

Probab=100.00  E-value=2.1e-34  Score=262.98  Aligned_cols=223  Identities=18%  Similarity=0.242  Sum_probs=176.8

Q ss_pred             cccCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCC-CCcccccccc
Q 045353           19 TESSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNG-VSVEERQNDS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~g-g~L~~~~~~~   92 (358)
                      ..+|..||+|.+.......     ...++.++.+....+...+++++........ ....++||||+.+ ++|.+++...
T Consensus        65 ~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~-~~~~~lv~e~~~~~~~L~~~l~~~  143 (320)
T 3a99_A           65 VSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER-PDSFVLILERPEPVQDLFDFITER  143 (320)
T ss_dssp             TTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-SSEEEEEEECCSSEEEHHHHHHHH
T ss_pred             CCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec-CCcEEEEEEcCCCCccHHHHHhcc
Confidence            3467789999987654332     3456667777776665456667666655443 3568899999987 9999999877


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----cccccc-CCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-VDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ..+++..+..++.+++.++.++|+.+++|+    +|||++ +++.+||+|||++...... .....||+.|+|||++.+.
T Consensus       144 ~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~kL~Dfg~~~~~~~~~~~~~~gt~~y~aPE~~~~~  223 (320)
T 3a99_A          144 GALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYH  223 (320)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHCCcEeCCCCHHHEEEeCCCCCEEEeeCccccccccccccCCCCCccCCChHHhccC
Confidence            788999999999999999999999999999    999999 7899999999999876543 4456899999999999887


Q ss_pred             CC-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KY-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .+ +.++|||||||++|+|++|..||....        .    +.                                   
T Consensus       224 ~~~~~~~Di~slG~il~el~~g~~pf~~~~--------~----~~-----------------------------------  256 (320)
T 3a99_A          224 RYHGRSAAVWSLGILLYDMVCGDIPFEHDE--------E----II-----------------------------------  256 (320)
T ss_dssp             CBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--------H----HH-----------------------------------
T ss_pred             CCCCccchHHhHHHHHHHHHHCCCCCCChh--------h----hh-----------------------------------
Confidence            75 788999999999999999999995211        0    00                                   


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             .....++...++.+.+||.+||+.||++|||++|+++||||+..
T Consensus       257 -------~~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~hp~~~~~  300 (320)
T 3a99_A          257 -------RGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  300 (320)
T ss_dssp             -------HCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             -------cccccccccCCHHHHHHHHHHccCChhhCcCHHHHhcCHhhcCc
Confidence                   00111233446789999999999999999999999999999864

>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=254.72  Aligned_cols=230  Identities=16%  Similarity=0.143  Sum_probs=173.7

Q ss_pred             ccCcccccccccCccc---hhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc--cc
Q 045353           20 ESSASKENKSLYGDLT---KNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND--SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~--~~   93 (358)
                      .+|..+|+|++.....   .....++.++.+...++  .|++++....... ......|+||||+.+| |.+++..  ..
T Consensus        28 ~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~-l~~~~~~~~~~  104 (305)
T 2wtk_C           28 ETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRL--RHKNVIQLVDVLYNEEKQKMYMVMEYCVCG-MQEMLDSVPEK  104 (305)
T ss_dssp             TTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTC--CCTTBCCEEEEEECC---CEEEEEECCSEE-HHHHHHHSTTC
T ss_pred             CCCcEEEEEEeccccccccchhHHHHHHHHHHHHhc--CCCCeeEEEEEEEcCCCCeEEEEehhccCC-HHHHHHhCccc
Confidence            4667889998876432   23456677777766664  5777777766542 3346789999999998 5555543  34


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~  164 (358)
                      .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....     ......||+.|+|||++.
T Consensus       105 ~~~~~~~~~~~~qi~~al~~LH~~~i~H~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~  184 (305)
T 2wtk_C          105 RFPVCQAHGYFCQLIDGLEYLHSQGIVHKDIKPGNLLLTTGGTLKISALGVAEALHPFAADDTCRTSQGSPAFQPPEIAN  184 (305)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCSSCEECCCCSCGGGCCHHHHT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHCCeeecCCCcccEEEcCCCcEEeeccccccccCccccccccccCCCCCCCcChhhcc
Confidence            57888999999999999999999999999    999999999999999999976542     223457999999999998


Q ss_pred             CCC--CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          165 GSK--YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       165 ~~~--~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +..  ++.++|||||||++|+|++|..||.+..      .......+..                               
T Consensus       185 ~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~i~~-------------------------------  227 (305)
T 2wtk_C          185 GLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN------IYKLFENIGK-------------------------------  227 (305)
T ss_dssp             CCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH-------------------------------
T ss_pred             CcccCCcchhhHHHHHHHHHHHHhCCCCCCCch------HHHHHHHHhc-------------------------------
Confidence            754  4789999999999999999999997543      2222222111                               


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR  300 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~  300 (358)
                                 ..+.++...+..+.+||.+||..||.+|||+.|+++||||+......
T Consensus       228 -----------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~~~~~~~~~~  274 (305)
T 2wtk_C          228 -----------GSYAIPGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQHSWFRKKHPPA  274 (305)
T ss_dssp             -----------CCCCCCSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHSHHHHSCCCC-
T ss_pred             -----------CCCCCCCccCHHHHHHHHHHccCChhhCCCHHHHhcCcccccCCCCc
Confidence                       11123344567889999999999999999999999999998754433

>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*

Probab=100.00  E-value=4.2e-34  Score=255.49  Aligned_cols=229  Identities=17%  Similarity=0.199  Sum_probs=176.4

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccccc----
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQNDSV----   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~~~----   93 (358)
                      .+|..+++|.+... .+...+..+.++.+...++  .|++++....... ......|+||||++||+|.+++....    
T Consensus        29 ~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~  106 (279)
T 2w5a_A           29 SDGKILVWKELDYGSMTEAEKQMLVSEVNLLREL--KHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ  106 (279)
T ss_dssp             TTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEEEGGGTEEEEEEECCTTEEHHHHHHHHHHTTC
T ss_pred             CCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhc--CCCCCCeEEEEEecCCCceEEEEEeCCCCCCHHHHHHhhcccCC
Confidence            35778898988754 4556677788887777764  5777777765332 23457899999999999999887533    


Q ss_pred             ccChhhhhHHHHhhhhccccccCCC-----CCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPS-----RATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~-----~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE  161 (358)
                      .+++..+..++.+++.++.++|..+     ++|+    +|||++.++.+||+|||++......   .....||+.|+|||
T Consensus       107 ~~~~~~~~~i~~~i~~~l~~lH~~~~~~~~ivH~dl~p~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~y~aPE  186 (279)
T 2w5a_A          107 YLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKTFVGTPYYMSPE  186 (279)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCSGGGEEECSSSCEEECCCCHHHHC---CHHHHHHHSCCTTCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcccCCCCeeEEeccchhhEEEcCCCCEEEecCchheeeccccccccccCCCccccChH
Confidence            3788899999999999999999998     9998    9999999999999999999765432   12347899999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..++.++|||||||++|+|++|..||...+      .......+..  +..                         
T Consensus       187 ~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~------~~~~~~~i~~--~~~-------------------------  233 (279)
T 2w5a_A          187 QMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GKF-------------------------  233 (279)
T ss_dssp             HHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH--TCC-------------------------
T ss_pred             HhccCCCCchhhHHHHHHHHHHHHHCCCCCcccC------HHHHHHHHhh--ccc-------------------------
Confidence            9999899999999999999999999999997543      2222222211  000                         


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                    ...+...+..+.+||.+||+.||.+|||+.|+|+|+|+.+..
T Consensus       234 --------------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~~~~~~~  275 (279)
T 2w5a_A          234 --------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLILEHH  275 (279)
T ss_dssp             --------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTCCGGG
T ss_pred             --------------ccCCcccCHHHHHHHHHHcCCCcccCCCHHHHHhChhhhhhc
Confidence                          012334467899999999999999999999999999998743

>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...

Probab=100.00  E-value=1.5e-33  Score=256.26  Aligned_cols=224  Identities=14%  Similarity=0.123  Sum_probs=179.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc-----
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV-----   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~-----   94 (358)
                      .+|..+|+|.+.........+++.++.+...++. .|++++.+...........|+||||++||+|.+++.....     
T Consensus        55 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hp~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  133 (316)
T 2xir_A           55 ATCRTVAVKMLKEGATHSEHRALMSELKILIHIG-HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPY  133 (316)
T ss_dssp             TCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECCTTSCCEEEEECCTTEEHHHHHHTCTTSEECC
T ss_pred             ccceEEEEEecccCCCcHHHHHHHHHHHHHHhcc-cCCCeeeEEEEEecCCCceEEEEEcCCCCcHHHHHHhcccccccc
Confidence            4567899999998887777788888887777653 5678888877666666779999999999999998876443     


Q ss_pred             -----------cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           95 -----------NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        95 -----------~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                                 +++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....||
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~t  213 (316)
T 2xir_A          134 KVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLP  213 (316)
T ss_dssp             -------CTTCEEHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCGGGSCTTTCTTSEEETTEEEC
T ss_pred             cccchhhhccccCHHHHHHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEECCCccccccccCccceeccCCCcc
Confidence                       6788999999999999999999999999    9999999999999999999765432     2234678


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+...     .......+....                    
T Consensus       214 ~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~-----~~~~~~~~~~~~--------------------  268 (316)
T 2xir_A          214 LKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEEFCRRLKEGT--------------------  268 (316)
T ss_dssp             GGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-----SHHHHHHHHHTC--------------------
T ss_pred             eeecCchhhccccccchhHHHHHHHHHHHHHhCCCCCCcccch-----hHHHHHHhccCc--------------------
Confidence            89999999999999999999999999999998 9999975442     122221111100                    


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ....+...++.+.+||.+||+.||.+|||+.|+++|
T Consensus       269 ---------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  304 (316)
T 2xir_A          269 ---------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  304 (316)
T ss_dssp             ---------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------cCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                 011233446789999999999999999999999876

>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=261.14  Aligned_cols=221  Identities=18%  Similarity=0.194  Sum_probs=177.0

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      .+..||+|.+..........++.++.+....+. .+++++.+...... ....|+||||++||+|.+++...        
T Consensus       100 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hpnIv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  177 (382)
T 3tt0_A          100 RVTKVAVKMLKSDATEKDLSDLISEMEMMKMIG-KHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLQARRPPGLEYS  177 (382)
T ss_dssp             CEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHTCCSSSSSC
T ss_pred             cceEEEEEeeccccCHHHHHHHHHHHHHHHHhc-CCchhhhheeeecc-CCceEEEEEecCCCcHHHHHHHhcccccccc
Confidence            345689999998888777788888888777753 67778877766543 45689999999999999988643        


Q ss_pred             --------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCC
Q 045353           93 --------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTR  155 (358)
Q Consensus        93 --------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~  155 (358)
                              ..+++.++..++.+++.|+.++|+.+++|+    +|||++.++.+||+|||+|+....     ......||+
T Consensus       178 ~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~  257 (382)
T 3tt0_A          178 YNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPV  257 (382)
T ss_dssp             CCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECSCSCCCCSSCCCTTCCCTTCCCGG
T ss_pred             cccccccccccCHHHHHHHHHHHHHHHHHHHhCCEecCCCCcceEEEcCCCcEEEcccCcccccccccccccccCCCCCc
Confidence                    247889999999999999999999999999    999999999999999999976542     233446788


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      .|+|||++.+..++.++|||||||++|+|++ |..||.+..      ..+....+....                     
T Consensus       258 ~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~---------------------  310 (382)
T 3tt0_A          258 KWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------VEELFKLLKEGH---------------------  310 (382)
T ss_dssp             GGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTTC---------------------
T ss_pred             ceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC---------------------
Confidence            9999999999999999999999999999999 999996543      222222211100                     


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                          ....+..++..+.+||.+||+.||++|||+.|++++
T Consensus       311 --------------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  346 (382)
T 3tt0_A          311 --------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED  346 (382)
T ss_dssp             --------------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                                112233456789999999999999999999999875

>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}

Probab=100.00  E-value=7.4e-34  Score=264.18  Aligned_cols=225  Identities=15%  Similarity=0.138  Sum_probs=178.0

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------c
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------V   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------~   93 (358)
                      ++..||+|.+....+.....++.++++...++  .|++++.+...... ....|+|||||+||+|.+++...       .
T Consensus       100 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  176 (367)
T 3l9p_A          100 SPLQVAVKTLPEVCSEQDELDFLMEALIISKF--NHQNIVRCIGVSLQ-SLPRFILLELMAGGDLKSFLRETRPRPSQPS  176 (367)
T ss_dssp             CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHHHSCCSSSCC
T ss_pred             cceeEEEEecccccChhhHHHHHHHHHHHHhC--CCCCCCeEEEEEec-CCCCEEEEEeCCCCCHHHHHHhhccccCccc
Confidence            45679999998888888888888888777664  67788877766543 45679999999999999988643       3


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC---cEEEEecCCceecC-----CCCCCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV---QCKLVDFGNACWTH-----KQFTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~---~vkL~DFG~a~~~~-----~~~~~~~gt~~Y~aPE  161 (358)
                      .+...++..++.+++.|+.|+|+.+++||    +|||++.++   .+||+|||+|+...     .......||+.|+|||
T Consensus       177 ~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~t~~y~aPE  256 (367)
T 3l9p_A          177 SLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRAGYYRKGGCAMLPVKWMPPE  256 (367)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHHHSSCTTCCGGGSCGGGCCHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEEecCCCCceEEECCCccccccccccccccCCCcCCcccEECHH
Confidence            47788899999999999999999999999    999999555   59999999996432     1223346799999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..|+.++|||||||++|+|++ |..||.+..      ....+..+....                           
T Consensus       257 ~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~------~~~~~~~i~~~~---------------------------  303 (367)
T 3l9p_A          257 AFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEFVTSGG---------------------------  303 (367)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTTC---------------------------
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC---------------------------
Confidence            9999999999999999999999998 999997543      222222221100                           


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                    ....+..++..+.+||.+||+.||.+|||+.++++|.|+..
T Consensus       304 --------------~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~  344 (367)
T 3l9p_A          304 --------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  344 (367)
T ss_dssp             --------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             --------------CCCCCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHh
Confidence                          01123345678999999999999999999999999988753

>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*

Probab=99.98  E-value=1.5e-33  Score=256.31  Aligned_cols=234  Identities=18%  Similarity=0.222  Sum_probs=173.5

Q ss_pred             ccccccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           16 KVVTESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      +....+|..+|+|.+... .......+++++.+...++...+++++.+...... ....|+||| +.+|+|.+++.....
T Consensus        46 ~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~-~~~~~lv~e-~~~~~L~~~l~~~~~  123 (313)
T 3cek_A           46 QVLNEKKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEIT-DQYIYMVME-CGNIDLNSWLKKKKS  123 (313)
T ss_dssp             EEECTTCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEEC-SSEEEEEEC-CCSEEHHHHHHHCSS
T ss_pred             EEEcCCCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeec-CCEEEEEEe-cCCCcHHHHHHhcCC
Confidence            344556778999998654 34455677778877777765445667766654433 456899999 788999999987777


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~  165 (358)
                      +++.++..++.+++.++.++|+.+++|+    +|||++ ++.+||+|||++......     ....+||+.|+|||++.+
T Consensus       124 ~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~-~~~~kL~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~  202 (313)
T 3cek_A          124 IDPWERKSYWKNMLEAVHTIHQHGIVHSDLKPANFLIV-DGMLKLIDFGIANQMQPDTTSVVKDSQVGTVNYMPPEAIKD  202 (313)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEE-TTEEEECCCSSSCC--------------CCGGGCCHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCceecCCCcccEEEE-CCeEEEeeccccccccCccccccccCCCCCCCcCCHHHHhh
Confidence            8889999999999999999999999999    999996 489999999999765432     234578999999999986


Q ss_pred             -----------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          166 -----------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       166 -----------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                                 ..++.++|||||||++|+|++|..||.....     ....   +........                 
T Consensus       203 ~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~-----~~~~---~~~~~~~~~-----------------  257 (313)
T 3cek_A          203 MSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN-----QISK---LHAIIDPNH-----------------  257 (313)
T ss_dssp             CC----------CCCHHHHHHHHHHHHHHHHHSSCTTTTCCS-----HHHH---HHHHHCTTS-----------------
T ss_pred             cccccccccccccCCchHHHHHHHHHHHHHHhCCCchhhHHH-----HHHH---HHHHHhccc-----------------
Confidence                       3688999999999999999999999964321     1111   111111100                 


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                                          ...++...+..+.+||.+||+.||.+|||+.|+|+||||+...
T Consensus       258 --------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h~~~~~~~  300 (313)
T 3cek_A          258 --------------------EIEFPDIPEKDLQDVLKCCLKRDPKQRISIPELLAHPYVQIQT  300 (313)
T ss_dssp             --------------------CCCCCCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHCC-
T ss_pred             --------------------ccCCcccchHHHHHHHHHHccCCcccCcCHHHHhcCccccCCC
Confidence                                0122333467889999999999999999999999999998643

>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A

Probab=99.98  E-value=2.2e-33  Score=253.30  Aligned_cols=226  Identities=18%  Similarity=0.203  Sum_probs=162.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC------------CCCCCCCCcccccCCCCCccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS------------KPSSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~iv~e~~~gg~L~~   87 (358)
                      .+|..+|+|.+..  .......+.++.+...++  .|++++......            .......|+||||++||+|.+
T Consensus        29 ~~~~~vaiK~~~~--~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~  104 (303)
T 1zy4_A           29 LDSRYYAIKKIRH--TEEKLSTILSEVMLLASL--NHQYVVRYYAAWLERRNFVKPMTAVKKKSTLFIQMEYCENGTLYD  104 (303)
T ss_dssp             TTCCEEEEEEEEE--EHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEEECCCCCC------CEEEEEEEEECCCSCBHHH
T ss_pred             CCCeEEEEEEEec--cHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHhhcchhhhhcccccCCceEEEEecCCCCCHHH
Confidence            4677899998854  344556667777666664  567676654421            123467899999999999999


Q ss_pred             ccccc-cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC----------------
Q 045353           88 RQNDS-VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK----------------  146 (358)
Q Consensus        88 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~----------------  146 (358)
                      ++... ...++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....                
T Consensus       105 ~l~~~~~~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~  184 (303)
T 1zy4_A          105 LIHSENLNQQRDEYWRLFRQILEALSYIHSQGIIHRDLKPMNIFIDESRNVKIGDFGLAKNVHRSLDILKLDSQNLPGSS  184 (303)
T ss_dssp             HHHHSCGGGCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCCCCCSCTTC----------------
T ss_pred             hhhccccccchHHHHHHHHHHHHHHHHHHhCCeecccCCHHhEEEcCCCCEEEeeCcchhhcccccchhccccccccccc
Confidence            98743 356778889999999999999999999999    999999999999999999976432                


Q ss_pred             -CCCCCccCCCcchhHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCC
Q 045353          147 -QFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG  224 (358)
Q Consensus       147 -~~~~~~gt~~Y~aPE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  224 (358)
                       .....+||+.|+|||++.+. .++.++|||||||++|+|++   ||...        ......+..+......      
T Consensus       185 ~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~--------~~~~~~~~~~~~~~~~------  247 (303)
T 1zy4_A          185 DNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTG--------MERVNILKKLRSVSIE------  247 (303)
T ss_dssp             ---------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSH--------HHHHHHHHHHHSTTCC------
T ss_pred             cccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCc--------hhHHHHHHhccccccc------
Confidence             12345789999999999875 58999999999999999998   44311        1111111111110000      


Q ss_pred             CCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          225 RYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                                   ....++...+..+.+||.+||+.||.+|||+.++++||||..
T Consensus       248 -----------------------------~~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~h~~~~~  289 (303)
T 1zy4_A          248 -----------------------------FPPDFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLNSGWLPV  289 (303)
T ss_dssp             -----------------------------CCTTCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHHSSCSCC
T ss_pred             -----------------------------cCccccccchHHHHHHHHHHHhcCcccCcCHHHHhCCCCcCC
Confidence                                         001123344677899999999999999999999999999974

>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}

Probab=99.98  E-value=1.7e-33  Score=255.81  Aligned_cols=223  Identities=16%  Similarity=0.214  Sum_probs=170.2

Q ss_pred             ccCcccccccccCccch-----hhhHHhhHHHHHhhhhc--cCCCccccccCCCCCCCCCCCccccc-CCCCCccccccc
Q 045353           20 ESSASKENKSLYGDLTK-----NQKKKVKKKAKKAAQGC--AGTEAFDESEADSKPSSPDNFSVDTI-PNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~iv~e~-~~gg~L~~~~~~   91 (358)
                      .+|..+|+|.+...-..     .....+.++.+...+..  ..|++++.+...... ....|+|||| +.|++|.+++..
T Consensus        54 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~~~~-~~~~~~v~e~~~~~~~L~~~l~~  132 (312)
T 2iwi_A           54 TDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDWFET-QEGFMLVLERPLPAQDLFDYITE  132 (312)
T ss_dssp             TTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEEC------CEEEEECCSSEEEHHHHHHH
T ss_pred             cCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEEEec-CCeEEEEEEecCCCCCHHHHHHh
Confidence            45778999998664332     23334445555544432  156777777665543 3567899999 899999999987


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----cccccc-CCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhC
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAA-VDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~-~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ...+++..+..++.+++.++.++|+.+++|+    +|||++ .++.+||+|||++..... ......||+.|+|||++.+
T Consensus       133 ~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~y~aPE~~~~  212 (312)
T 2iwi_A          133 KGPLGEGPSRCFFGQVVAAIQHCHSRGVVHRDIKDENILIDLRRGCAKLIDFGSGALLHDEPYTDFDGTRVYSPPEWISR  212 (312)
T ss_dssp             HCSCCHHHHHHHHHHHHHHHHHHHHHTEECCCCSGGGEEEETTTTEEEECCCSSCEECCSSCBCCCCSCTTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHCCeeecCCChhhEEEeCCCCeEEEEEcchhhhcccCcccccCCcccccCceeeec
Confidence            7778999999999999999999999999998    999999 889999999999977653 3455689999999999988


Q ss_pred             CCC-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 SKY-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      ..+ +.++|||||||++|+|++|+.||....        .    +.                                  
T Consensus       213 ~~~~~~~~Di~slG~il~~l~~g~~pf~~~~--------~----~~----------------------------------  246 (312)
T 2iwi_A          213 HQYHALPATVWSLGILLYDMVCGDIPFERDQ--------E----IL----------------------------------  246 (312)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHHSSCSCCSHH--------H----HH----------------------------------
T ss_pred             CCCCCccchHHHHHHHHHHHHHCCCCCCChH--------H----Hh----------------------------------
Confidence            775 558999999999999999999995211        0    00                                  


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                              .....++...+..+.+||.+||+.||++|||+.|+++||||+...
T Consensus       247 --------~~~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~~~~~~~~  291 (312)
T 2iwi_A          247 --------EAELHFPAHVSPDCCALIRRCLAPKPSSRPSLEEILLDPWMQTPA  291 (312)
T ss_dssp             --------HTCCCCCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHHSTTTCC--
T ss_pred             --------hhccCCcccCCHHHHHHHHHHccCChhhCcCHHHHhcChhhcCch
Confidence                    001123344567899999999999999999999999999999753

>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*

Probab=99.98  E-value=1.3e-32  Score=250.96  Aligned_cols=241  Identities=14%  Similarity=0.081  Sum_probs=177.0

Q ss_pred             ccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--
Q 045353           16 KVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--   93 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--   93 (358)
                      +....+|..||+|...... .....++.++.+....  ..|++++.+..... .....|+||||++||+|.+++....  
T Consensus        57 ~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~  132 (321)
T 2qkw_B           57 KGVLRDGAKVALKRRTPES-SQGIEEFETEIETLSF--CRHPHLVSLIGFCD-ERNEMILIYKYMENGNLKRHLYGSDLP  132 (321)
T ss_dssp             EEECTTCCEEEEEECCSCC-SSHHHHHHHHHHGGGS--CCCTTBCCEEEECC-CTTCCEEEEECCTTCBTGGGSSSSCCC
T ss_pred             EEEECCCCEEEEEEecccC-hHHHHHHHHHHHHHHh--CCCCCEeeEEEEEc-CCCeEEEEEEcCCCCcHHHHHhccCCC
Confidence            3345568889999887653 3345566777666655  35777887776654 3467899999999999999886543  


Q ss_pred             --ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHH
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEV  162 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~  162 (358)
                        .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....||+.|+|||+
T Consensus       133 ~~~~~~~~~~~i~~~i~~~l~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~  212 (321)
T 2qkw_B          133 TMSMSWEQRLEICIGAARGLHYLHTRAIIHRDVKSINILLDENFVPKITDFGISKKGTELDQTHLSTVVKGTLGYIDPEY  212 (321)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCSTTEEECTTCCEEECCCTTCEECSSSSCCCCBCCCEEETTTCCHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHhcCCCeecCCCCHHHEEECCCCCEEEeecccccccccccccccccccCCCccccCHHH
Confidence              47788999999999999999999999998    9999999999999999999764322     233468999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +.+..++.++|||||||++|+|++|+.||.+................ ...+.                     +.....
T Consensus       213 ~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~~~~~-~~~~~---------------------~~~~~~  270 (321)
T 2qkw_B          213 FIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVES-HNNGQ---------------------LEQIVD  270 (321)
T ss_dssp             HHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHHTHHH-HTTTC---------------------CCSSSS
T ss_pred             hcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHHhhhc-ccccc---------------------HHHhcC
Confidence            99989999999999999999999999999765433221111110000 00000                     000000


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                      .         ......+...+..+.+|+.+||+.||++|||+.|+++|.
T Consensus       271 ~---------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L  310 (321)
T 2qkw_B          271 P---------NLADKIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKL  310 (321)
T ss_dssp             S---------SCTTCSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             h---------hhccccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHH
Confidence            0         001123456688999999999999999999999999864

>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}

Probab=99.98  E-value=1.7e-33  Score=253.85  Aligned_cols=229  Identities=14%  Similarity=0.159  Sum_probs=171.7

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+.....  ....+++.++.+...++  .|++++.+..... .....|+||||++||+|.+++.....+++
T Consensus        34 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l--~hp~iv~~~~~~~-~~~~~~lv~e~~~g~~L~~~l~~~~~~~~  110 (294)
T 4eqm_A           34 ILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQL--SHQNIVSMIDVDE-EDDCYYLVMEYIEGPTLSEYIESHGPLSV  110 (294)
T ss_dssp             TTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTC--CBTTBCCEEEEEE-CSSEEEEEEECCCSCBHHHHHHHHCSCCH
T ss_pred             CCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcC--CCCCCceEEEeee-eCCeEEEEEeCCCCCCHHHHHHhcCCCCH
Confidence            4577889998755433  33446677777766664  5777777766543 34578999999999999999988778899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......    ....+||+.|+|||++.+..++
T Consensus       111 ~~~~~~~~qi~~~l~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  190 (294)
T 4eqm_A          111 DTAINFTNQILDGIKHAHDMRIVHRDIKPQNILIDSNKTLKIFDFGIAKALSETSLTQTNHVLGTVQYFSPEQAKGEATD  190 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCSSSTTC-------------CCSSCCHHHHHTCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCCCCHHHEEECCCCCEEEEeCCCccccccccccccCccccCccccCHhHhcCCCCC
Confidence            9999999999999999999999999    9999999999999999999765432    2345799999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||.+.+      .....  +..+....+..                              
T Consensus       191 ~~~Di~slG~~l~~ll~g~~pf~~~~------~~~~~--~~~~~~~~~~~------------------------------  232 (294)
T 4eqm_A          191 ECTDIYSIGIVLYEMLVGEPPFNGET------AVSIA--IKHIQDSVPNV------------------------------  232 (294)
T ss_dssp             TTHHHHHHHHHHHHHHHSSCSSCSSC------HHHHH--HHHHSSCCCCH------------------------------
T ss_pred             chHhHHHHHHHHHHHHhCCCCCCCCC------hHHHH--HHHhhccCCCc------------------------------
Confidence            99999999999999999999997544      11111  11111111110                              


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                           ........++.+.++|.+||+.||.+||+..+.+.+.|..
T Consensus       233 -----~~~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~  272 (294)
T 4eqm_A          233 -----TTDVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSS  272 (294)
T ss_dssp             -----HHHSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHT
T ss_pred             -----chhcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHH
Confidence                 1122344577899999999999999999666666666654

>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*

Probab=99.98  E-value=2.7e-33  Score=266.06  Aligned_cols=227  Identities=17%  Similarity=0.240  Sum_probs=160.8

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc---
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN---   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~---   95 (358)
                      ..+|..||+|.+.....    ....++.+...+. ..|++++....... ....+|+|||||+ |+|.+++......   
T Consensus        36 ~~~g~~vAvK~~~~~~~----~~~~~E~~~l~~l-~~HpnIv~~~~~~~-~~~~~~lv~E~~~-gsL~~~l~~~~~~~~~  108 (434)
T 2rio_A           36 SFQGRPVAVKRMLIDFC----DIALMEIKLLTES-DDHPNVIRYYCSET-TDRFLYIALELCN-LNLQDLVESKNVSDEN  108 (434)
T ss_dssp             ESSSSEEEEEEEEGGGH----HHHHHHHHHHHHH-TTSTTBCCEEEEEE-CSSEEEEEECCCS-EEHHHHHHTC------
T ss_pred             EECCeEEEEEEEcHHHH----HHHHHHHHHHHhc-cCCCCcCeEEEEEe-cCCeEEEEEecCC-CCHHHHHhccCCCchh
Confidence            45688999998865432    3344555554443 36788888765543 3467899999996 5999988754332   


Q ss_pred             ----ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCC-------------CcEEEEecCCceecCCC-------
Q 045353           96 ----NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD-------------VQCKLVDFGNACWTHKQ-------  147 (358)
Q Consensus        96 ----~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~-------------~~vkL~DFG~a~~~~~~-------  147 (358)
                          .+..+..++.|++.|+.|+|+.+++||    +|||++.+             +.+||+|||+|......       
T Consensus       109 ~~~~~~~~~~~i~~qi~~aL~~LH~~~ivHrDLkp~NILl~~~~~~~~~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~  188 (434)
T 2rio_A          109 LKLQKEYNPISLLRQIASGVAHLHSLKIIHRDLKPQNILVSTSSRFTADQQTGAENLRILISDFGLCKKLDSGQSSFRTN  188 (434)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEECCHHHHSCCTTCCCSCEEEECCCTTCEECCC--------
T ss_pred             hhhccchhHHHHHHHHHHHHHHHHHCCccccCCChHhEEEecCcccccccccCCCceEEEEcccccceecCCCCccceee
Confidence                334567899999999999999999999    99999754             48999999999875432       


Q ss_pred             CCCCccCCCcchhHHHhC-------CCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchh
Q 045353          148 FTNDIQTRQYRCPEVLLG-------SKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRK  219 (358)
Q Consensus       148 ~~~~~gt~~Y~aPE~l~~-------~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~  219 (358)
                      ....+||+.|+|||++.+       ..++.++|||||||++|+|++ |..||.....      ..  ..+....-..+. 
T Consensus       189 ~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~------~~--~~i~~~~~~~~~-  259 (434)
T 2rio_A          189 LNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKHPFGDKYS------RE--SNIIRGIFSLDE-  259 (434)
T ss_dssp             ------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCCTTCSTTT------HH--HHHHHTCCCCCC-
T ss_pred             ecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCCCCCCchh------hH--HHHhcCCCCccc-
Confidence            234589999999999976       558999999999999999999 9999964321      11  111110000000 


Q ss_pred             hhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          220 IALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                       .                 ........+.++.+||.+||+.||.+|||+.++++||||..
T Consensus       260 -----------------~-----------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~hp~f~~  301 (434)
T 2rio_A          260 -----------------M-----------------KCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLRHPLFWP  301 (434)
T ss_dssp             -----------------C-----------------TTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSC
T ss_pred             -----------------c-----------------cccccccchHHHHHHHHHHhhCChhhCCCHHHHHhCCccCC
Confidence                             0                 00112345788999999999999999999999999999974

>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...

Probab=99.98  E-value=6.1e-33  Score=258.51  Aligned_cols=220  Identities=16%  Similarity=0.176  Sum_probs=167.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~   98 (358)
                      .++..||+|.+........++.+.++.+...++  .|++++.+...... ....|+|||||+||+|.+++.... .+++.
T Consensus        71 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~~~~~~~~-~~~~~lv~e~~~~~sL~~~l~~~~~~~~~~  147 (373)
T 2qol_A           71 KKEISVAIKTLKVGYTEKQRRDFLGEASIMGQF--DHPNIIRLEGVVTK-SKPVMIVTEYMENGSLDSFLRKHDAQFTVI  147 (373)
T ss_dssp             SCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTTTTCSCHH
T ss_pred             CCceeEEEEEecCccCHHHHHHHHHHHHHHHhC--CCCCCCeEEEEEee-CCceEEEEeCCCCCcHHHHHHhCCCCCCHH
Confidence            467789999999888888888899998888774  67788877766543 467899999999999999987643 57888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC------CCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF------TNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~------~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+|+......      ....+|+.|+|||++.+..+
T Consensus       148 ~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  227 (373)
T 2qol_A          148 QLVGMLRGIASGMKYLSDMGYVHRDLAARNILINSNLVCKVSDFGLGRVLEDDPEAAYTTRGGKIPIRWTSPEAIAYRKF  227 (373)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC----------------------CTTSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeCCCCCcceEEEcCCCCEEECcCccccccccCCccceeccCCCcCCCccChhhhccCCc
Confidence            999999999999999999999999    99999999999999999997654321      12245778999999999999


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||...+      ..+....+....                                  
T Consensus       228 ~~~~Dv~SlG~il~ellt~g~~P~~~~~------~~~~~~~i~~~~----------------------------------  267 (373)
T 2qol_A          228 TSASDVWSYGIVLWEVMSYGERPYWEMS------NQDVIKAVDEGY----------------------------------  267 (373)
T ss_dssp             CHHHHHHHHHHHHHHHHTTC-CTTTTCC------HHHHHHHHHTTE----------------------------------
T ss_pred             CchhcHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999997 999996543      222222221100                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+..++..+.+||.+||+.||.+|||+.++++
T Consensus       268 -------~~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~  302 (373)
T 2qol_A          268 -------RLPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVS  302 (373)
T ss_dssp             -------ECCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------CCCCCccccHHHHHHHHHHhCcChhhCcCHHHHHH
Confidence                   01122344678999999999999999999999875

>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*

Probab=99.98  E-value=5.8e-33  Score=272.68  Aligned_cols=249  Identities=18%  Similarity=0.177  Sum_probs=181.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc-
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV-   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~-   93 (358)
                      .+|..||+|.+....+.....++.++.+....+  .|++++.+......     .....|+|||||+||+|.+++.... 
T Consensus        37 ~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L--~HpnIV~l~~v~~~~~~~~~~~~~~LVmEy~~ggsL~~~L~~~~~  114 (676)
T 3qa8_A           37 DTGEQVAIKQCRQELSPKNRERWCLEIQIMKKL--NHPNVVSAREVPDGLQKLAPNDLPLLAMEYCEGGDLRKYLNQFEN  114 (676)
T ss_dssp             TTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHC--CBTTBCCEEECCTTTCCCCTTSSCCCEEECCSSCBHHHHHHSSSC
T ss_pred             CCCcEEEEEEecccCCHHHHHHHHHHHHHHHhC--CCCCCCceeeeecccccccCCCeEEEEEEeCCCCCHHHHHHhccc
Confidence            568899999999988888888898888888774  57777766554322     3577899999999999999887543 


Q ss_pred             --ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCc---EEEEecCCceecCCC--CCCCccCCCcchhHH
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ---CKLVDFGNACWTHKQ--FTNDIQTRQYRCPEV  162 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~---vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~  162 (358)
                        .+++..+..++.+++.|+.|+|+.+++|+    +|||++.++.   +||+|||++......  ....+||+.|+|||+
T Consensus       115 ~~~lse~~i~~I~~QLl~aL~yLHs~gIVHrDLKP~NILl~~~g~~~~vKL~DFG~a~~~~~~~~~~~~~gt~~Y~APE~  194 (676)
T 3qa8_A          115 CCGLKEGPIRTLLSDISSALRYLHENRIIHRDLKPENIVLQPGPQRLIHKIIDLGYAKELDQGELCTEFVGTLQYLAPEL  194 (676)
T ss_dssp             TTCCCSSHHHHHHHHHHHHHHHHHHTTBCCCCCCSTTEEEECCSSSCEEEECSCCCCCBTTSCCCCCCCCSCCTTCSSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHCCCccCCCCHHHeEeecCCCceeEEEcccccccccccccccccccCCcccCChHH
Confidence              57888999999999999999999999999    9999997664   899999999875433  345689999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc-cCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR-HGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~-~~~~~~~~  241 (358)
                      +.+..++.++|||||||++|+|++|..||.+...      ..      .+.+........    ....+.. .+...   
T Consensus       195 l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~------~~------~~~~~i~~~~~~----~~~~~~~l~g~~~---  255 (676)
T 3qa8_A          195 LEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ------PV------QWHGKVREKSNE----HIVVYDDLTGAVK---  255 (676)
T ss_dssp             SCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH------HH------HSSTTCC----------CCSCCCCSSSCC---
T ss_pred             hccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc------hh------hhhhhhhcccch----hhhhhhhhccccc---
Confidence            9998999999999999999999999999965320      00      000000000000    0000000 00000   


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                            ...............+..+.+||.+||.+||++|||+.|+++||||..
T Consensus       256 ------~~~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~elL~hp~F~~  303 (676)
T 3qa8_A          256 ------FSSVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQNPNVGCFQA  303 (676)
T ss_dssp             ------CCSSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTCCCCTTHHH
T ss_pred             ------cccccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHHhcCHHHHH
Confidence                  000000112344557889999999999999999999999999999975

>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}

Probab=99.98  E-value=3.1e-33  Score=255.29  Aligned_cols=224  Identities=14%  Similarity=0.124  Sum_probs=159.4

Q ss_pred             ccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC-----CCCCcccccCCCCCccccccccc----
Q 045353           24 SKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS-----PDNFSVDTIPNGVSVEERQNDSV----   93 (358)
Q Consensus        24 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~iv~e~~~gg~L~~~~~~~~----   93 (358)
                      .||+|.+.... ......++.++.+...++  .+++++..........     ...|+||||+.||+|.+++....    
T Consensus        53 ~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~  130 (323)
T 3qup_A           53 KVAVKMLKADIIASSDIEEFLREAACMKEF--DHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDLHAFLLASRIGEN  130 (323)
T ss_dssp             EEEEEEC------CHHHHHHHHHHHHHTTC--CCTTBCCCCEEEECC-------CEEEEEECCTTCBHHHHHHHHHC---
T ss_pred             eEEEEEecccccCHHHHHHHHHHHHHHHHC--CCCceehhhceeeccccccCCCccEEEEEeccCCcHHHHHHhhhcccc
Confidence            68999987754 445567777777777664  6777777766543322     23489999999999999886432    


Q ss_pred             --ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHH
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEV  162 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~  162 (358)
                        .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......     .....+|+.|+|||+
T Consensus       131 ~~~~~~~~~~~i~~qi~~al~~LH~~~ivH~Dikp~NIli~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~  210 (323)
T 3qup_A          131 PFNLPLQTLVRFMVDIACGMEYLSSRNFIHRDLAARNCMLAEDMTVCVADFGLSRKIYSGDYYRQGCASKLPVKWLALES  210 (323)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC-----------------CCGGGCCHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHHcCCcccCCCCcceEEEcCCCCEEEeeccccccccccccccccccccCcccccCchh
Confidence              47888999999999999999999999999    9999999999999999999765322     223356788999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      +.+..++.++|||||||++|+|++ |..||.+...      ......+..   .                          
T Consensus       211 ~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~------~~~~~~~~~---~--------------------------  255 (323)
T 3qup_A          211 LADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIEN------AEIYNYLIG---G--------------------------  255 (323)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCG------GGHHHHHHT---T--------------------------
T ss_pred             hcCCCCCCccchhhHHHHHHHHHhCCCCCccccCh------HHHHHHHhc---C--------------------------
Confidence            999999999999999999999999 9999975441      111111110   0                          


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-------HHHHhcCcCcCCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-------AAQCLSHPWMSAG  296 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-------a~elL~hpwf~~~  296 (358)
                                  .....+...+..+.+||.+||+.||++|||       ++++++|||+...
T Consensus       256 ------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~~~~~~~  305 (323)
T 3qup_A          256 ------------NRLKQPPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGHLSVLST  305 (323)
T ss_dssp             ------------CCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC------
T ss_pred             ------------CCCCCCCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhhhcCC
Confidence                        011233445678999999999999999999       6778899999874

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.98  E-value=2.9e-33  Score=267.04  Aligned_cols=217  Identities=17%  Similarity=0.149  Sum_probs=171.6

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~~~   98 (358)
                      +|..||+|.+....   ..+.+.++++...++  .|++++............+|+|||||+||+|.+++....  .++..
T Consensus       215 ~~~~vavK~~~~~~---~~~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~  289 (450)
T 1k9a_A          215 RGNKVAVKCIKNDA---TAQAFLAEASVMTQL--RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGGD  289 (450)
T ss_dssp             TTEEEEEEEESSCT---TSHHHHHHHHHHHTC--CCTTBCCEEEEEECTTSCEEEEEECCTTCBHHHHHHHHCTTTCCHH
T ss_pred             cCCeEEEEEeCCch---HHHHHHHHHHHHHhc--cCCCEEEEEEEEEcCCCceEEEEEecCCCcHHHHHHhcCCCCCCHH
Confidence            46789999998653   456677787777764  678888887765555567899999999999999998644  36788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhh
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      .+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+..........+|+.|+|||++.+..++.++||
T Consensus       290 ~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~sDv  369 (450)
T 1k9a_A          290 CLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDV  369 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTSCEEECCCTTCEECC------CCCTTTSCHHHHHSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEECCCCCEEEeeCCCcccccccccCCCCCcceeCHHHhcCCCCCcHHHH
Confidence            899999999999999999999999    9999999999999999999876554445578899999999999999999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++|+|++ |..||.+....      +....+..  |.                                      
T Consensus       370 wslG~~l~el~t~g~~P~~~~~~~------~~~~~i~~--~~--------------------------------------  403 (450)
T 1k9a_A          370 WSFGILLWEIYSFGRVPYPRIPLK------DVVPRVEK--GY--------------------------------------  403 (450)
T ss_dssp             HHHHHHHHHHHTTTCCSSTTSCTT------THHHHHHT--TC--------------------------------------
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCHH------HHHHHHHc--CC--------------------------------------
Confidence            999999999998 99999754421      11111110  00                                      


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       ....+..+++.+.+||.+||..||.+|||+.++++
T Consensus       404 -~~~~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~  438 (450)
T 1k9a_A          404 -KMDAPDGCPPAVYDVMKNCWHLDAATRPTFLQLRE  438 (450)
T ss_dssp             -CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence             11234456788999999999999999999999874

>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*

Probab=99.98  E-value=2.3e-33  Score=251.15  Aligned_cols=219  Identities=12%  Similarity=0.115  Sum_probs=165.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~   99 (358)
                      .+..||+|......+...+.++.++.+...++  .|++++.+....  .+...|+||||++||+|.+++.... .+++..
T Consensus        42 ~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  117 (281)
T 1mp8_A           42 PALAVAIKTCKNCTSDSVREKFLQEALTMRQF--DHPHIVKLIGVI--TENPVWIIMELCTLGELRSFLQVRKYSLDLAS  117 (281)
T ss_dssp             CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC--CCTTBCCEEEEE--CSSSCEEEEECCTTEEHHHHHHHTTTTSCHHH
T ss_pred             CceEEEEEeccccCCHHHHHHHHHHHHHHHhC--CCCccceEEEEE--ccCccEEEEecCCCCCHHHHHHhcCCCCCHHH
Confidence            34568999998877777788888888777764  577777776654  3457899999999999999987543 578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......    .....+|+.|+|||++.+..++.+
T Consensus       118 ~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  197 (281)
T 1mp8_A          118 LILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA  197 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHhCCeecccccHHHEEECCCCCEEECccccccccCcccccccccCCCcccccChhhcccCCCCCc
Confidence            99999999999999999999999    9999999999999999999765432    223356789999999999899999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||.+...      .+.+..+...                                      
T Consensus       198 ~Di~slG~~l~ell~~g~~pf~~~~~------~~~~~~i~~~--------------------------------------  233 (281)
T 1mp8_A          198 SDVWMFGVCMWEILMHGVKPFQGVKN------NDVIGRIENG--------------------------------------  233 (281)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTTCCG------GGHHHHHHTT--------------------------------------
T ss_pred             cCchHHHHHHHHHHhcCCCCCCcCCH------HHHHHHHHcC--------------------------------------
Confidence            999999999999996 9999975441      1222111100                                      


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                         .....+..+++.+.+||.+||..||++|||+.|++++
T Consensus       234 ---~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  270 (281)
T 1mp8_A          234 ---ERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  270 (281)
T ss_dssp             ---CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence               0112334557889999999999999999999999864

>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}

Probab=99.98  E-value=4e-32  Score=246.40  Aligned_cols=223  Identities=18%  Similarity=0.209  Sum_probs=163.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc---ccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV---VNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~---~~~~   97 (358)
                      ++..+|+|.+..   ...++.+.++.+....+  .|++++.......   ...|+||||++||+|.+++....   ....
T Consensus        30 ~~~~vavK~~~~---~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~---~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  101 (307)
T 2eva_A           30 RAKDVAIKQIES---ESERKAFIVELRQLSRV--NHPNIVKLYGACL---NPVCLVMEYAEGGSLYNVLHGAEPLPYYTA  101 (307)
T ss_dssp             TTEEEEEEECSS---TTHHHHHHHHHHHHHHC--CCTTBCCEEEBCT---TTTEEEEECCTTCBHHHHHHCSSSEECCCH
T ss_pred             CCeeEEEEEecC---hhHHHHHHHHHHHHhcC--CCCCcCeEEEEEc---CCcEEEEEcCCCCCHHHHHhccCCCCccCH
Confidence            467789998864   34556677777766663  6778887776554   35899999999999999987544   3567


Q ss_pred             hhhhHHHHhhhhccccccC---CCCCCc----ccccccCCCc-EEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRR---PSRATR----KNLLAAVDVQ-CKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~---~~~~hr----~NILl~~~~~-vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.|+|+   .+++|+    +|||++.++. +||+|||++...........||+.|+|||++.+..++
T Consensus       102 ~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~  181 (307)
T 2eva_A          102 AHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGTACDIQTHMTNNKGSAAWMAPEVFEGSNYS  181 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC------------CCTTSSCHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEcccccccccccccccCCCCCceEChhhhCCCCCC
Confidence            7888999999999999999   889999    9999998886 7999999998776666667899999999999998999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||......    .......+  ..+..                                 
T Consensus       182 ~~~Di~slG~il~el~~g~~p~~~~~~~----~~~~~~~~--~~~~~---------------------------------  222 (307)
T 2eva_A          182 EKCDVFSWGIILWEVITRRKPFDEIGGP----AFRIMWAV--HNGTR---------------------------------  222 (307)
T ss_dssp             THHHHHHHHHHHHHHHHTCCTTTTTCSS----HHHHHHHH--HTTCC---------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHCCCCchhhCcc----HHHHHHHH--hcCCC---------------------------------
Confidence            9999999999999999999999644311    11111000  00110                                 


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc-----CcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS-----HPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~-----hpwf~~~  296 (358)
                            ...+...+..+.+||.+||+.||++|||++++++     ..+|...
T Consensus       223 ------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~~  268 (307)
T 2eva_A          223 ------PPLIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPGA  268 (307)
T ss_dssp             ------CCCBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCCT
T ss_pred             ------CCcccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccCC
Confidence                  1122344678899999999999999999999987     3566543

>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}

Probab=99.98  E-value=4.9e-33  Score=252.56  Aligned_cols=221  Identities=15%  Similarity=0.076  Sum_probs=172.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+|+|.+.. ......+.+.++.+...++  .|++++.+..... .....|+||||++||+|.+++.. ...+++.
T Consensus        33 ~~~~~va~K~~~~-~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  108 (310)
T 3s95_A           33 ETGEVMVMKELIR-FDEETQRTFLKEVKVMRCL--EHPNVLKFIGVLY-KDKRLNFITEYIKGGTLRGIIKSMDSQYPWS  108 (310)
T ss_dssp             TTCCEEEEEEESC-CCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEE-ETTEEEEEEECCTTCBHHHHHHHCCTTSCHH
T ss_pred             CCCcEEEEEEecc-CCHHHHHHHHHHHHHHHhC--CCcCcccEEEEEe-cCCeeEEEEEecCCCcHHHHHHhccCCCCHH
Confidence            4577889998754 3556667788887777664  5777777766544 34568999999999999999876 4568889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----------------CCCccCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----------------TNDIQTRQY  157 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----------------~~~~gt~~Y  157 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.......                 ...+||+.|
T Consensus       109 ~~~~i~~qi~~al~~lH~~~ivH~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y  188 (310)
T 3s95_A          109 QRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVRENKNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYW  188 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEECTTSCEEECCCTTCEECC--------------------CCCCSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCCCCCcCeEEECCCCCEEEeecccceecccccccccccccccccccccccccCCCcce
Confidence            999999999999999999999999    99999999999999999997653221                 145799999


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                      +|||++.+..++.++|||||||++|+|++|..||...........                                   
T Consensus       189 ~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~-----------------------------------  233 (310)
T 3s95_A          189 MAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFG-----------------------------------  233 (310)
T ss_dssp             CCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSS-----------------------------------
T ss_pred             eCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHh-----------------------------------
Confidence            999999999999999999999999999999999864432111000                                   


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                ...........+..+++.+.+||.+||+.||++|||+.++++
T Consensus       234 ----------~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~  275 (310)
T 3s95_A          234 ----------LNVRGFLDRYCPPNCPPSFFPITVRCCDLDPEKRPSFVKLEH  275 (310)
T ss_dssp             ----------BCHHHHHHHTCCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----------hhhhccccccCCCCCCHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                      000000011234455678899999999999999999999976

>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7

Probab=99.97  E-value=4.8e-33  Score=255.98  Aligned_cols=221  Identities=14%  Similarity=0.131  Sum_probs=175.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..||+|.+...........+.++.+...++  .|++++........ ....|+||||++||+|.+++...       
T Consensus        75 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  151 (343)
T 1luf_A           75 EPFTMVAVKMLKEEASADMQADFQREAALMAEF--DNPNIVKLLGVCAV-GKPMCLLFEYMAYGDLNEFLRSMSPHTVCS  151 (343)
T ss_dssp             SSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHTCC-----
T ss_pred             CCceeEEEEEeccccCHHHHHHHHHHHHHHHhC--CCCCEEEEEEEEcc-CCceEEEEecCCCCcHHHHHHHhCcccccc
Confidence            445789999999888877888888888887774  67777777665443 46789999999999999988652       


Q ss_pred             -----------------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----
Q 045353           93 -----------------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----  147 (358)
Q Consensus        93 -----------------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----  147 (358)
                                       ..+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    
T Consensus       152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~  231 (343)
T 1luf_A          152 LSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK  231 (343)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC
T ss_pred             cccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCeecCCCCcceEEECCCCeEEEeecCCCcccccCcccc
Confidence                             457788999999999999999999999999    9999999999999999999654321    


Q ss_pred             -CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          148 -FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       148 -~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                       .....||+.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+..  +.          
T Consensus       232 ~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~------~~~~~~~~~~--~~----------  293 (343)
T 1luf_A          232 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA------HEEVIYYVRD--GN----------  293 (343)
T ss_dssp             ----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHT--TC----------
T ss_pred             ccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHHhcCCCcCCCCC------hHHHHHHHhC--CC----------
Confidence             234578899999999999899999999999999999999 999997543      2222222110  00          


Q ss_pred             CChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                                   ....+..++..+.+||.+||+.||.+|||+.+++++
T Consensus       294 -----------------------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~~~~~  329 (343)
T 1luf_A          294 -----------------------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHRI  329 (343)
T ss_dssp             -----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------------cCCCCCCCCHHHHHHHHHHcccCcccCCCHHHHHHH
Confidence                                         011234456789999999999999999999999763

>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*

Probab=99.97  E-value=3.5e-33  Score=260.58  Aligned_cols=219  Identities=16%  Similarity=0.157  Sum_probs=175.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~   99 (358)
                      +|..||+|.+........+.++.++++...++  .|++++.+...... ....|+|||||+||+|.+++.... .++..+
T Consensus       138 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~hpniv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  214 (377)
T 3cbl_A          138 DNTLVAVKSCRETLPPDLKAKFLQEARILKQY--SHPNIVRLIGVCTQ-KQPIYIVMELVQGGDFLTFLRTEGARLRVKT  214 (377)
T ss_dssp             TCCEEEEEECCTTSCHHHHTTTTHHHHHHTTC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHHGGGCCHHH
T ss_pred             CCeEEEEEEccccCCHHHHHHHHHHHHHHHhC--CCCCEEEEEEEEec-CCCcEEEEEcCCCCCHHHHHHhcCCCCCHHH
Confidence            67789999999888888888888998887774  67788887766543 456899999999999999987543 578889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC-----CCCccCCCcchhHHHhCCCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF-----TNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~-----~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+......     ....+++.|+|||++.+..|+.
T Consensus       215 ~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nil~~~~~~~kl~DfG~s~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  294 (377)
T 3cbl_A          215 LLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSS  294 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECTTSEEECCSSCCEEEGGGSCHHHHHHCEEEH
T ss_pred             HHHHHHHHHHHHHHHHHCCcCCcccCHHHEEEcCCCcEEECcCCCceecCCCceeecCCCCCCCcCcCCHhHhccCCCCc
Confidence            99999999999999999999999    99999999999999999997654321     1223577899999999888999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |..||.+.+      .......+.. ..                                   
T Consensus       295 ~~DvwslG~il~el~t~g~~p~~~~~------~~~~~~~~~~-~~-----------------------------------  332 (377)
T 3cbl_A          295 ESDVWSFGILLWETFSLGASPYPNLS------NQQTREFVEK-GG-----------------------------------  332 (377)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTSC------HHHHHHHHHT-TC-----------------------------------
T ss_pred             hhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHc-CC-----------------------------------
Confidence            9999999999999998 999997543      2222111110 00                                   


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+..++..+.+||.+||+.||++|||+.++++
T Consensus       333 -----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  367 (377)
T 3cbl_A          333 -----RLPCPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQ  367 (377)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHH
Confidence                 11223445678999999999999999999999975

>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*

Probab=99.97  E-value=6.5e-33  Score=253.49  Aligned_cols=247  Identities=16%  Similarity=0.134  Sum_probs=176.8

Q ss_pred             ccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--
Q 045353           16 KVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--   93 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--   93 (358)
                      +....+|..||+|.+..........++.++.+....  ..|++++.+...... ....|+||||+.||+|.+++....  
T Consensus        48 ~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~  124 (326)
T 3uim_A           48 KGRLADGTLVAVKRLKEERTQGGELQFQTEVEMISM--AVHRNLLRLRGFCMT-PTERLLVYPYMANGSVASCLRERPES  124 (326)
T ss_dssp             EECCSSSCCEEEEECCC-----CCCHHHHHHHGGGT--CCCTTBCCCCEEECC-SSCCEEEEECCTTCBHHHHHHCCSTT
T ss_pred             EEEecCCCEEEEEEeccccCchHHHHHHHHHHHHHh--ccCCCccceEEEEec-CCceEEEEEeccCCCHHHHHHhcccc
Confidence            333456889999999887776666677777776655  357778777766543 456789999999999999887543  


Q ss_pred             --ccChhhhhHHHHhhhhccccccCC---CCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchh
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRP---SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCP  160 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~---~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aP  160 (358)
                        .+++..+..++.+++.++.++|+.   +++|+    +|||++.++.+||+|||+|......    .....||+.|+||
T Consensus       125 ~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~gt~~y~aP  204 (326)
T 3uim_A          125 QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAP  204 (326)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEECTTCCEEECCCSSCEECCSSSSCEECCCCSCGGGCCH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEECCCCCEEeccCccccccCcccccccccccCCcCccCH
Confidence              377889999999999999999999   99998    9999999999999999999865422    3344699999999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      |++.+..++.++|||||||++|+|++|..||......... .......+   .+....                ......
T Consensus       205 E~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~-~~~~~~~~---~~~~~~----------------~~~~~~  264 (326)
T 3uim_A          205 EYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDD-DVMLLDWV---KGLLKE----------------KKLEAL  264 (326)
T ss_dssp             HHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHHTTTS-CSBHHHHH---TTTTSS----------------CCSTTS
T ss_pred             HHhccCCCCccccchhHHHHHHHHHhCCCccccccccccc-chhHHHHH---HHHhhc----------------hhhhhh
Confidence            9999888999999999999999999999999521100000 00000000   000000                000000


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                      ..         ......++...+..+.+|+.+||+.||.+|||+.|+++|-+-.
T Consensus       265 ~~---------~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~~  309 (326)
T 3uim_A          265 VD---------VDLQGNYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEGD  309 (326)
T ss_dssp             SC---------TTCTTSCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHTS
T ss_pred             cC---------hhhccccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcCc
Confidence            00         0001134456678999999999999999999999999987643

>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*

Probab=99.97  E-value=5e-33  Score=252.63  Aligned_cols=220  Identities=16%  Similarity=0.167  Sum_probs=175.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      +|..+|+|.+.........+++.++.+...++  .|++++........ ....|+||||+.||+|.+++....       
T Consensus        52 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~  128 (314)
T 2ivs_A           52 GYTTVAVKMLKENASPSELRDLLSEFNVLKQV--NHPHVIKLYGACSQ-DGPLLLIVEYAKYGSLRGFLRESRKVGPGYL  128 (314)
T ss_dssp             SEEEEEEEECCTTCCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC
T ss_pred             CcceEEEEeccCCCCHHHHHHHHHHHHHHhhC--CCCceeeEEEEEec-CCceEEEEeecCCCCHHHHHHHHhhccCCcc
Confidence            45689999999888777888888888877774  67778777665443 457899999999999999887533       


Q ss_pred             -----------------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----
Q 045353           94 -----------------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----  147 (358)
Q Consensus        94 -----------------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----  147 (358)
                                       .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~  208 (314)
T 2ivs_A          129 GSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEMKLVHRDLAARNILVAEGRKMKISDFGLSRDVYEEDSYVK  208 (314)
T ss_dssp             ----------------CEECHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTEEEECCCTTCEECTTTSCEEC
T ss_pred             cccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHCCCcccccchheEEEcCCCCEEEcccccccccccccccee
Confidence                             36788999999999999999999999999    9999999999999999999765432     


Q ss_pred             CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCC
Q 045353          148 FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRY  226 (358)
Q Consensus       148 ~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~  226 (358)
                      .....+|+.|+|||++.+..++.++|||||||++|+|++ |..||.+...      ......+..  +.           
T Consensus       209 ~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~------~~~~~~~~~--~~-----------  269 (314)
T 2ivs_A          209 RSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIVTLGGNPYPGIPP------ERLFNLLKT--GH-----------  269 (314)
T ss_dssp             SSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHT--TC-----------
T ss_pred             ccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHhhc--CC-----------
Confidence            234467889999999999889999999999999999999 9999975431      111111110  00           


Q ss_pred             ChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                                  ....+...++.+.+||.+||+.||++|||+.+++++
T Consensus       270 ----------------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~~l~~~  305 (314)
T 2ivs_A          270 ----------------------------RMERPDNCSEEMYRLMLQCWKQEPDKRPVFADISKD  305 (314)
T ss_dssp             ----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------------------------cCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                        012234457889999999999999999999999875

>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}

Probab=99.97  E-value=1.7e-33  Score=264.33  Aligned_cols=249  Identities=16%  Similarity=0.151  Sum_probs=182.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccc---c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVV---N   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~---~   95 (358)
                      .+|..||+|++...........+.++.+....+  .+++++.+....... ....|+|||||+||+|.+++.....   +
T Consensus        32 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~hpnIv~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~l  109 (396)
T 4eut_A           32 KTGDLFAIKVFNNISFLRPVDVQMREFEVLKKL--NHKNIVKLFAIEEETTTRHKVLIMEFCPCGSLYTVLEEPSNAYGL  109 (396)
T ss_dssp             TTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHC--CCTTBCCEEEEEECTTTCCEEEEECCCTTEEHHHHTTSGGGTTCC
T ss_pred             CCCcEEEEEEeccccccchHHHHHHHHHHHHhc--CCCCCCeEEEeeccCCCCeeEEEEecCCCCCHHHHHHhhhcccCC
Confidence            457889999998776666677777777777664  577888877654433 3467999999999999999986543   8


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccc----cCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLA----AVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl----~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++..+..++.+++.|+.|+|+.+++|+    +|||+    +.++.+||+|||+|+.....  ....+||+.|+|||++.+
T Consensus       110 ~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  189 (396)
T 4eut_A          110 PESEFLIVLRDVVGGMNHLRENGIVHRNIKPGNIMRVIGEDGQSVYKLTDFGAARELEDDEQFVSLYGTEEYLHPDMYER  189 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEEEECTTSCEEEEECCGGGCEECCCGGGSSCSSSCCTTCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCEEECCcCHHHEEEeecCCCceeEEEecCCCceEccCCCccccccCCccccCHHHhhc
Confidence            889999999999999999999999999    99999    77888999999999775432  456689999999999975


Q ss_pred             --------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCc
Q 045353          166 --------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL  237 (358)
Q Consensus       166 --------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~  237 (358)
                              ..|+.++|||||||++|+|++|+.||.+.....     .....+..++...|...+.......     .+..
T Consensus       190 ~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~-----~~~~  259 (396)
T 4eut_A          190 AVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGPR-----RNKEVMYKIITGKPSGAISGVQKAE-----NGPI  259 (396)
T ss_dssp             HCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCTT-----TCHHHHHHHHHSCCTTCCEEEECST-----TCCE
T ss_pred             cccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCccc-----chHHHHHHHhcCCCcccchhheecc-----CCCc
Confidence                    457889999999999999999999997654322     1223344444443332211100000     0000


Q ss_pred             hhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      .+...         ......+....+..+.+||.+||++||++|||++|+++
T Consensus       260 ~~~~~---------~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~  302 (396)
T 4eut_A          260 DWSGD---------MPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFA  302 (396)
T ss_dssp             EEESS---------CCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHH
T ss_pred             ccCcc---------CCcccccchHHHhhchHHHHHhhccChhhhccHHHHHH
Confidence            00000         00112344667889999999999999999999999854

>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*

Probab=99.97  E-value=5.1e-33  Score=253.97  Aligned_cols=240  Identities=15%  Similarity=0.107  Sum_probs=163.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC---CCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..|..||+|.+...  ........++.+...+  +.|++++.+.......   ...+|+|||||+||+|.+++... .++
T Consensus        45 ~~~~~vavK~~~~~--~~~~~~~~~E~~~l~~--l~hpniv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~  119 (322)
T 3soc_A           45 LLNEYVAVKIFPIQ--DKQSWQNEYEVYSLPG--MKHENILQFIGAEKRGTSVDVDLWLITAFHEKGSLSDFLKAN-VVS  119 (322)
T ss_dssp             ETTEEEEEEEECGG--GHHHHHHHHHHHTSTT--CCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-CBC
T ss_pred             ECCCEEEEEEeecC--chHHHHHHHHHHHHhc--CCCCCchhhcceeccCCCCCceEEEEEecCCCCCHHHHHHhc-CCC
Confidence            34678999998543  2222233333333333  4677888777664432   34479999999999999998654 378


Q ss_pred             hhhhhHHHHhhhhccccccCC----------CCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCc
Q 045353           97 ESSRDNEVKNTSQGVKGHRRP----------SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQY  157 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~----------~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y  157 (358)
                      +..+..++.+++.++.|+|+.          +++|+    +|||++.++.+||+|||+|+.....     ....+||+.|
T Consensus       120 ~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~kL~DFg~a~~~~~~~~~~~~~~~~gt~~y  199 (322)
T 3soc_A          120 WNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTACIADFGLALKFEAGKSAGDTHGQVGTRRY  199 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEEECCCTTCEEECTTSCCCCCTTCCCCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEEEccCCcccccccccCccccccCccCccc
Confidence            889999999999999999999          99999    9999999999999999999765432     2345899999


Q ss_pred             chhHHHhCC-----CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhh
Q 045353          158 RCPEVLLGS-----KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFN  232 (358)
Q Consensus       158 ~aPE~l~~~-----~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~  232 (358)
                      +|||++.+.     .++.++|||||||++|+|++|+.||.+........-..      .....+...             
T Consensus       200 ~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~~~~~~~------~~~~~~~~~-------------  260 (322)
T 3soc_A          200 MAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEYMLPFEE------EIGQHPSLE-------------  260 (322)
T ss_dssp             CCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCCCCTTHH------HHCSSCCHH-------------
T ss_pred             cCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchhccchhh------hhccCCchh-------------
Confidence            999999874     35678899999999999999999998655322111100      000000000             


Q ss_pred             ccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          233 RHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ........................+..+.+||.+||+.||++|||+.|+++
T Consensus       261 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~  311 (322)
T 3soc_A          261 ------DMQEVVVHKKKRPVLRDYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGE  311 (322)
T ss_dssp             ------HHHHHHTTSCCCCCCCGGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------hhhhhhhcccCCCCccccccccchHHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                  000000000000000000112234677999999999999999999999975

>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*

Probab=99.97  E-value=5.3e-33  Score=249.59  Aligned_cols=227  Identities=20%  Similarity=0.279  Sum_probs=175.0

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      +|..+|+|.+..... .....++.++.+...++  .+++++.+...... ....|+||||+.|++|.+++.....+++.+
T Consensus        46 ~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  122 (287)
T 2wei_A           46 TQQEYAVKVINKASAKNKDTSTILREVELLKKL--DHPNIMKLFEILED-SSSFYIVGELYTGGELFDEIIKRKRFSEHD  122 (287)
T ss_dssp             TCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHSSCCHHH
T ss_pred             CCcEEEEEEecccccchHHHHHHHHHHHHHHhc--cCCCccEEEEEEeC-CCeEEEEEEccCCCCHHHHHHhcCCCCHHH
Confidence            677889998865443 34456777777776664  66777776655433 457899999999999999887777788999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCC---CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD---VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~---~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.+   +.+||+|||++......  .....||+.|+|||++.+. ++.
T Consensus       123 ~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIlv~~~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~-~~~  201 (287)
T 2wei_A          123 AARIIKQVFSGITYMHKHNIVHRDLKPENILLESKEKDCDIKIIDFGLSTCFQQNTKMKDRIGTAYYIAPEVLRGT-YDE  201 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECSTTGGGTBCCCSSCSCHHHHHTTCCHHHHTTC-CCT
T ss_pred             HHHHHHHHHHHHHHHHHCCeeccCCChhhEEEecCCCcccEEEeccCcceeecCCCccccccCcccccChHHhcCC-CCC
Confidence            99999999999999999999998    99999764   47999999999765432  3344789999999998764 899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|..||.+.+      ..+.+..+.......+                                 
T Consensus       202 ~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~~~~~~~~---------------------------------  242 (287)
T 2wei_A          202 KCDVWSAGVILYILLSGTPPFYGKN------EYDILKRVETGKYAFD---------------------------------  242 (287)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHCCCCCC---------------------------------
T ss_pred             chhhHhHHHHHHHHHhCCCCCCCCC------HHHHHHHHHcCCCCCC---------------------------------
Confidence            9999999999999999999997543      2333322221100000                                 


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                           .......+..+.+||.+||..||++|||+.|+|+||||+.
T Consensus       243 -----~~~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~hp~~~~  282 (287)
T 2wei_A          243 -----LPQWRTISDDAKDLIRKMLTFHPSLRITATQCLEHPWIQK  282 (287)
T ss_dssp             -----SGGGTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHSHHHHH
T ss_pred             -----chhhhhcCHHHHHHHHHHcccChhhCcCHHHHhcCHHHhc
Confidence                 0011234678999999999999999999999999999975

>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5e-33  Score=256.16  Aligned_cols=224  Identities=17%  Similarity=0.112  Sum_probs=171.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-------   93 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-------   93 (358)
                      ++..||+|.+..........++.++.+...++. .|++++.+...... ....|+||||++||+|.+++....       
T Consensus        74 ~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hp~iv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~  151 (344)
T 1rjb_A           74 VSIQVAVKMLKEKADSSEREALMSELKMMTQLG-SHENIVNLLGACTL-SGPIYLIFEYCCYGDLLNYLRSKREKFSEDE  151 (344)
T ss_dssp             CEEEEEEEEECC------CHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTTTTCC----
T ss_pred             cceEEEEEecccccCHHHHHHHHHHHHHHHhhc-CCCCeeeEEEEEee-CCccEEEEecCCCCcHHHHHhhccccccccc
Confidence            455789999988777777788888888777752 67777777665543 457899999999999999887542       


Q ss_pred             ----------------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----C
Q 045353           94 ----------------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----F  148 (358)
Q Consensus        94 ----------------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~  148 (358)
                                      .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .
T Consensus       152 ~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~ivH~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~  231 (344)
T 1rjb_A          152 IEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVR  231 (344)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEE
T ss_pred             cchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCChhhEEEcCCCcEEeCCCccCcccccCccceec
Confidence                            26788899999999999999999999998    9999999999999999999765322     2


Q ss_pred             CCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC
Q 045353          149 TNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS  227 (358)
Q Consensus       149 ~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  227 (358)
                      ....||+.|+|||++.+..++.++|||||||++|+|++ |..||.+...     .......+...  .            
T Consensus       232 ~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-----~~~~~~~~~~~--~------------  292 (344)
T 1rjb_A          232 GNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV-----DANFYKLIQNG--F------------  292 (344)
T ss_dssp             TTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC-----SHHHHHHHHTT--C------------
T ss_pred             cCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHHcCCCCCcccCCc-----HHHHHHHHhcC--C------------
Confidence            23467889999999999899999999999999999998 9999975542     11111111100  0            


Q ss_pred             hhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                                                 ....+...++.+.+||.+||+.||.+|||+.++++|..
T Consensus       293 ---------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~  330 (344)
T 1rjb_A          293 ---------------------------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSFLG  330 (344)
T ss_dssp             ---------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred             ---------------------------CCCCCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence                                       01223344678999999999999999999999998754

>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*

Probab=99.97  E-value=5.2e-33  Score=251.01  Aligned_cols=228  Identities=18%  Similarity=0.179  Sum_probs=164.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC---CCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS---KPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      +|..||+|.+...    ....+.++.+........|++++......   .......|+||||++||+|.+++.. ..+++
T Consensus        30 ~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~-~~~~~  104 (301)
T 3q4u_A           30 QGENVAVKIFSSR----DEKSWFRETELYNTVMLRHENILGFIASDMTSRHSSTQLWLITHYHEMGSLYDYLQL-TTLDT  104 (301)
T ss_dssp             TTEEEEEEEECGG----GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEEETTEEEEEEEECCCTTCBHHHHHTT-CCBCH
T ss_pred             CCEEEEEEEeccc----cchhhHHHHHHHHHhhccCcCeeeEEEeeccccCCCceeEEehhhccCCCHHHHHhh-cccCH
Confidence            6778999987543    33444455555544445778777776542   2224568999999999999999964 45788


Q ss_pred             hhhhHHHHhhhhcccccc--------CCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHR--------RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h--------~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~  158 (358)
                      ..+..++.+++.|+.|+|        +.+++|+    +|||++.++.+||+|||+|+.....       ....+||+.|+
T Consensus       105 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~  184 (301)
T 3q4u_A          105 VSCLRIVLSIASGLAHLHIEIFGTQGKPAIAHRDLKSKNILVKKNGQCCIADLGLAVMHSQSTNQLDVGNNPRVGTKRYM  184 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEEECCCCCCCCCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCeecCCCChHhEEEcCCCCEEEeeCCCeeeccccccccccccccccccccee
Confidence            899999999999999999        9999998    9999999999999999999764322       23448999999


Q ss_pred             hhHHHhCC------CCCcchhhhhhhHHHHhhhcC----------CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          159 CPEVLLGS------KYSTSADLWSFACICFELATG----------DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       159 aPE~l~~~------~~~~~~DiwSlGvil~ell~g----------~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                      |||++.+.      .++.++|||||||++|+|++|          ..||........  ....+..+....+..+.    
T Consensus       185 aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~~~~~~pf~~~~~~~~--~~~~~~~~~~~~~~~~~----  258 (301)
T 3q4u_A          185 APEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIVEDYKPPFYDVVPNDP--SFEDMRKVVCVDQQRPN----  258 (301)
T ss_dssp             CHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC--CHHHHHHHHTTSCCCCC----
T ss_pred             ChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCccccccccccccccCCCCc--chhhhhHHHhccCCCCC----
Confidence            99999987      445789999999999999999          777754332111  11222111111110000    


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                    ..........+..+.+||.+||+.||++|||+.|+++
T Consensus       259 ------------------------------~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~  295 (301)
T 3q4u_A          259 ------------------------------IPNRWFSDPTLTSLAKLMKECWYQNPSARLTALRIKK  295 (301)
T ss_dssp             ------------------------------CCGGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHHHH
T ss_pred             ------------------------------CChhhccCccHHHHHHHHHHHhhcChhhCCCHHHHHH
Confidence                                          0000122345788999999999999999999999975

>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*

Probab=99.97  E-value=1.5e-32  Score=249.43  Aligned_cols=223  Identities=15%  Similarity=0.132  Sum_probs=175.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      .++..||+|.+........+..+.++.+...++. .|++++.+...... ....|+||||++||+|.+++....      
T Consensus        51 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  128 (313)
T 1t46_A           51 DAAMTVAVKMLKPSAHLTEREALMSELKVLSYLG-NHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS  128 (313)
T ss_dssp             TCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHHTTTTC---
T ss_pred             chhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcc-cCCCeeeEEEEEec-CCCcEEEEecCCCCCHHHHHHhcccccccc
Confidence            4566899999988877777788888888777652 67777777665443 457899999999999999887543      


Q ss_pred             ------------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCc
Q 045353           94 ------------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDI  152 (358)
Q Consensus        94 ------------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~  152 (358)
                                  .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~  208 (313)
T 1t46_A          129 KTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNAR  208 (313)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSE
T ss_pred             cccccccccccccCCHHHHHHHHHHHHHHHHHHHHCCeecCCCccceEEEcCCCCEEEccccccccccccccceeccCCC
Confidence                        37888999999999999999999999999    9999999999999999999765433     22346


Q ss_pred             cCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh
Q 045353          153 QTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF  231 (358)
Q Consensus       153 gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  231 (358)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |..||.+...     .......+....                  
T Consensus       209 ~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~-----~~~~~~~~~~~~------------------  265 (313)
T 1t46_A          209 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV-----DSKFYKMIKEGF------------------  265 (313)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS-----SHHHHHHHHHTC------------------
T ss_pred             CcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCCcccc-----hhHHHHHhccCC------------------
Confidence            7889999999999899999999999999999998 9999975442     111111111100                  


Q ss_pred             hccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                             ....+...+..+.+||.+||+.||.+|||+.|++++
T Consensus       266 -----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  301 (313)
T 1t46_A          266 -----------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQL  301 (313)
T ss_dssp             -----------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----------------------CCCCcccCCHHHHHHHHHHcCCCchhCcCHHHHHHH
Confidence                                   001223446789999999999999999999999864

>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=1.3e-32  Score=244.62  Aligned_cols=223  Identities=13%  Similarity=0.136  Sum_probs=173.0

Q ss_pred             ccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccc
Q 045353           16 KVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVV   94 (358)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~   94 (358)
                      +....++..+|+|.+......  ..++.++.+...++  .|++++.+...... ....|+||||++||+|.+++.. ...
T Consensus        28 ~~~~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~  102 (269)
T 4hcu_A           28 LGYWLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKL--SHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRTQRGL  102 (269)
T ss_dssp             EEEETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTC--CCTTBCCEEEEECS-SSSEEEEEECCTTCBHHHHHHTTTTC
T ss_pred             EEEecCCCeEEEEEecccccC--HHHHHHHHHHHHhC--CCCCEeeEEEEEec-CCceEEEEEeCCCCcHHHHHHhcCcc
Confidence            333446777999998865433  34577777776664  56777777665443 4568999999999999999864 345


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+.
T Consensus       103 ~~~~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  182 (269)
T 4hcu_A          103 FAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFS  182 (269)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHC
T ss_pred             cCHHHHHHHHHHHHHHHHHHHhCCeecCCcchheEEEcCCCCEEeccccccccccccccccccCcccccccCCHHHhcCC
Confidence            7888999999999999999999999998    9999999999999999999765432    3445678889999999998


Q ss_pred             CCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .++.++||||+||++|+|++ |..||.+..      .......+....                                
T Consensus       183 ~~~~~~Di~slG~~l~~ll~~g~~p~~~~~------~~~~~~~~~~~~--------------------------------  224 (269)
T 4hcu_A          183 RYSSKSDVWSFGVLMWEVFSEGKIPYENRS------NSEVVEDISTGF--------------------------------  224 (269)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTTC--------------------------------
T ss_pred             CCCchhhhHHHHHHHHHHhcCCCCCCCCCC------HHHHHHHHhcCc--------------------------------
Confidence            99999999999999999999 999997543      222222221110                                


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                               ....+...+..+.+||.+||+.||++|||+.++++|
T Consensus       225 ---------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~  260 (269)
T 4hcu_A          225 ---------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  260 (269)
T ss_dssp             ---------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------cCCCCCcCCHHHHHHHHHHccCCcccCcCHHHHHHH
Confidence                     011233346789999999999999999999999875

>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=6.8e-33  Score=258.07  Aligned_cols=219  Identities=15%  Similarity=0.090  Sum_probs=164.7

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~  101 (358)
                      ..+|+|.+..........++.++.+...+  +.|++++.........++..|+||||++||+|.+++... ...++.++.
T Consensus       118 ~~vavK~~~~~~~~~~~~~~~~E~~il~~--l~hpnIv~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~  195 (373)
T 3c1x_A          118 IHCAVKSLNRITDIGEVSQFLTEGIIMKD--FSHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLI  195 (373)
T ss_dssp             EEEEEEECCSCSCSHHHHHHHHHHTTSTT--CCCTTBCCCCEEECCCSSCCEEEEECCTTCBHHHHHHCTTCCCBHHHHH
T ss_pred             EEEEEEEcCCCCCHHHHHHHHHHHHHHHh--CCCCCcceEEEEEEcCCCCeEEEEECCCCCCHHHHHhhcccCCCHHHHH
Confidence            46799999877666777777777776665  468888888876555567889999999999999998754 346778889


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCCCCc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....       .....+|+.|+|||++.+..++.
T Consensus       196 ~i~~qi~~aL~~LH~~~ivHrDlkp~NIll~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  275 (373)
T 3c1x_A          196 GFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTT  275 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC---------------------CCGGGSCHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHHHHHCCEecCccchheEEECCCCCEEEeeccccccccccccccccccCCCCCcccccChHHhcCCCCCc
Confidence            999999999999999999999    9999999999999999999754321       23346788999999999999999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |.+||...+...      ....+..  +.                                  
T Consensus       276 ~~DvwSlG~il~ellt~~~~p~~~~~~~~------~~~~~~~--~~----------------------------------  313 (373)
T 3c1x_A          276 KSDVWSFGVLLWELMTRGAPPYPDVNTFD------ITVYLLQ--GR----------------------------------  313 (373)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSCTTSCSSC------HHHHHHT--TC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCcCCCCCCCCHHH------HHHHHHc--CC----------------------------------
Confidence            9999999999999999 678886543211      1111100  00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                           ....+..++..+.+||.+||+.||++|||+.|++++
T Consensus       314 -----~~~~p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~  349 (373)
T 3c1x_A          314 -----RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  349 (373)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 011233456789999999999999999999999864

>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=7.5e-33  Score=248.60  Aligned_cols=222  Identities=14%  Similarity=0.141  Sum_probs=177.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .++..||+|.+..........++.++.+...++  .+++++......  .....|+||||+.||+|.+++... ..+++.
T Consensus        35 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  110 (287)
T 1u59_A           35 KKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL--DNPYIVRLIGVC--QAEALMLVMEMAGGGPLHKFLVGKREEIPVS  110 (287)
T ss_dssp             -CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHTTCTTTSCHH
T ss_pred             CCcceEEEEecCCccchhHHHHHHHHHHHHHhC--CCCCEeEEEEEe--cCCCcEEEEEeCCCCCHHHHHHhCCccCCHH
Confidence            356789999999887777788888888877774  577777776665  345689999999999999988643 458889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....||+.|+|||++.+..+
T Consensus       111 ~~~~~~~qi~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  190 (287)
T 1u59_A          111 NVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF  190 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeeCCCchheEEEcCCCCEEECcccceeeeccCcceeeccccccccccccCHHHhccCCC
Confidence            999999999999999999999998    9999999999999999999765422      223356889999999998889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||....      ..+....+..  +.                                
T Consensus       191 ~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~i~~--~~--------------------------------  230 (287)
T 1u59_A          191 SSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK--------------------------------  230 (287)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--TC--------------------------------
T ss_pred             CchhhHHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHhc--CC--------------------------------
Confidence            999999999999999998 999997543      2222222111  00                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW  292 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpw  292 (358)
                             ....+...++.+.+||.+||..||++|||+.++++|.+
T Consensus       231 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~  268 (287)
T 1u59_A          231 -------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMR  268 (287)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHH
T ss_pred             -------cCCCCCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHH
Confidence                   01233455788999999999999999999999998753

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.97  E-value=1.9e-32  Score=261.68  Aligned_cols=223  Identities=14%  Similarity=0.170  Sum_probs=174.3

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      ...+..||+|.+....  .....+.++++...++  .|++++.+.....  ...+|+|||||.||+|.+++....  ..+
T Consensus       209 ~~~~~~vavK~~~~~~--~~~~~~~~E~~~l~~l--~h~~iv~l~~~~~--~~~~~lv~e~~~~g~L~~~l~~~~~~~~~  282 (454)
T 1qcf_A          209 YNKHTKVAVKTMKPGS--MSVEAFLAEANVMKTL--QHDKLVKLHAVVT--KEPIYIITEFMAKGSLLDFLKSDEGSKQP  282 (454)
T ss_dssp             ETTTEEEEEEEECTTS--BCHHHHHHHHHHHTTC--CCTTBCCEEEEEC--SSSCEEEECCCTTCBHHHHHHSHHHHTCC
T ss_pred             ECCccEEEEEEecCCC--ccHHHHHHHHHHHhhC--CCCCEeeEEEEEe--CCccEEEEeecCCCcHHHHHHhccCCCCC
Confidence            3456679999987643  3456777777777664  6778888776654  457899999999999999987542  567


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ...+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....+|..|+|||++.+..|
T Consensus       283 ~~~~~~~~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  362 (454)
T 1qcf_A          283 LPKLIDFSAQIAEGMAFIEQRNYIHRDLRAANILVSASLVCKIADFGLARVIEDNEYTAREGAKFPIKWTAPEAINFGSF  362 (454)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTCCEEECSTTGGGGBCCHHHHTTCSSSSCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEECCCCcEEEeeCCCceEcCCCceeccCCCcccccccCHHHhccCCC
Confidence            78889999999999999999999999    9999999999999999999765432    233456788999999998899


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |+.||.+.+      ..+.+..+....                                  
T Consensus       363 ~~~~DvwslG~~l~el~t~g~~P~~~~~------~~~~~~~i~~~~----------------------------------  402 (454)
T 1qcf_A          363 TIKSDVWSFGILLMEIVTYGRIPYPGMS------NPEVIRALERGY----------------------------------  402 (454)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHHTC----------------------------------
T ss_pred             CcHHHHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999999 999997543      233333222111                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc--CcCcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMS  294 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~--hpwf~  294 (358)
                             ....+..+++.+.+||.+||..||++|||++++++  ..++.
T Consensus       403 -------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~  444 (454)
T 1qcf_A          403 -------RMPRPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYT  444 (454)
T ss_dssp             -------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSS
T ss_pred             -------CCCCCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHh
Confidence                   01123445678999999999999999999999975  34444

>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*

Probab=99.97  E-value=4.3e-32  Score=243.50  Aligned_cols=221  Identities=16%  Similarity=0.130  Sum_probs=169.4

Q ss_pred             ccCcccccccccCccchhhh------HHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-
Q 045353           20 ESSASKENKSLYGDLTKNQK------KKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-   92 (358)
                      .+|..+|+|.+.........      +++.++.+...++  .|++++.+......   ..++||||++||+|.+++... 
T Consensus        42 ~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~---~~~lv~e~~~~~~L~~~l~~~~  116 (287)
T 4f0f_A           42 KDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNL--NHPNIVKLYGLMHN---PPRMVMEFVPCGDLYHRLLDKA  116 (287)
T ss_dssp             TTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTC--CCTTBCCEEEEETT---TTEEEEECCTTCBHHHHHHCTT
T ss_pred             CCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhC--CCCCchhhheeecC---CCeEEEEecCCCCHHHHHhccc
Confidence            46778999988765444332      4566666666664  57777777765543   347999999999998877543 


Q ss_pred             cccChhhhhHHHHhhhhccccccCCC--CCCc----ccccccCCCc-----EEEEecCCceecCCCCCCCccCCCcchhH
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAVDVQ-----CKLVDFGNACWTHKQFTNDIQTRQYRCPE  161 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~~~~-----vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE  161 (358)
                      ..+++..+..++.+++.++.++|+.+  ++|+    +|||++.++.     +||+|||+|...........||+.|+|||
T Consensus       117 ~~~~~~~~~~~~~~l~~~l~~lH~~~~~ivH~dikp~Nil~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~g~~~y~aPE  196 (287)
T 4f0f_A          117 HPIKWSVKLRLMLDIALGIEYMQNQNPPIVHRDLRSPNIFLQSLDENAPVCAKVADFGLSQQSVHSVSGLLGNFQWMAPE  196 (287)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHTSSSCCBCSCCSGGGEEESCCCTTCSCCEEECCCTTCBCCSSCEECCCCCCTTSCGG
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCCCCeecCCCCcceEEEeccCCCCceeEEeCCCCccccccccccccCCCccccCch
Confidence            46788899999999999999999999  9998    9999988776     99999999987766666778999999999


Q ss_pred             HHhC--CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          162 VLLG--SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       162 ~l~~--~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ++.+  ..++.++|||||||++|+|++|..||......    ....... ....+..                       
T Consensus       197 ~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~~~-~~~~~~~-----------------------  248 (287)
T 4f0f_A          197 TIGAEEESYTEKADTYSFAMILYTILTGEGPFDEYSYG----KIKFINM-IREEGLR-----------------------  248 (287)
T ss_dssp             GSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTCCCC----HHHHHHH-HHHSCCC-----------------------
T ss_pred             hhccCCCCcCchhhHHHHHHHHHHHHcCCCCCcccccc----HHHHHHH-HhccCCC-----------------------
Confidence            9953  44789999999999999999999999754421    1111111 1111111                       


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                      ...+..+++.+.+||.+||+.||.+|||++|+++
T Consensus       249 ----------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  282 (287)
T 4f0f_A          249 ----------------PTIPEDCPPRLRNVIELCWSGDPKKRPHFSYIVK  282 (287)
T ss_dssp             ----------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----------------CCCCcccCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                            1233455788999999999999999999999985

>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...

Probab=99.97  E-value=2.7e-32  Score=250.36  Aligned_cols=222  Identities=17%  Similarity=0.178  Sum_probs=174.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV------   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~------   93 (358)
                      .++..||+|.+..........++.++.+...++. .+++++.+...... ....|+||||++||+|.+++....      
T Consensus        65 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  142 (334)
T 2pvf_A           65 KEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIG-KHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLRARRPPGMEY  142 (334)
T ss_dssp             ---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSCCEEEEECCTTCBHHHHHHTTSCTTCCS
T ss_pred             ccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhh-cCCCEeeEEEEEcc-CCceEEEEECCCCCcHHHHHHHhccccccc
Confidence            4567899999998877777778888887777652 66777777665443 457899999999999999887543      


Q ss_pred             ----------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           94 ----------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        94 ----------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                                .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....+|
T Consensus       143 ~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~  222 (334)
T 2pvf_A          143 SYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLP  222 (334)
T ss_dssp             CC--------CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECTTTSSEECCSCCCCC
T ss_pred             cccccccccccCCHHHHHHHHHHHHHHHHHHHhCCeeCCCCccceEEEcCCCCEEEccccccccccccccccccCCCCcc
Confidence                      36778899999999999999999999999    9999999999999999999765432     2344678


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+..++.++|||||||++|+|++ |..||.+..      .......+....                    
T Consensus       223 ~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~--------------------  276 (334)
T 2pvf_A          223 VKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIP------VEELFKLLKEGH--------------------  276 (334)
T ss_dssp             GGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHHTC--------------------
T ss_pred             cceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCCCcCcCC------HHHHHHHHhcCC--------------------
Confidence            89999999999889999999999999999999 999997543      222222221100                    


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                           ....+..++..+.+||.+||..||.+|||+.|++++
T Consensus       277 ---------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  312 (334)
T 2pvf_A          277 ---------------------RMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVED  312 (334)
T ss_dssp             ---------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---------------------CCCCCccCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                                 011233456789999999999999999999999875

>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...

Probab=99.97  E-value=7.8e-33  Score=252.43  Aligned_cols=226  Identities=16%  Similarity=0.189  Sum_probs=176.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..+|+|.+..........++.++.+....+  .+++++........ ....|+||||++||+|.+++...       
T Consensus        53 ~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  129 (322)
T 1p4o_A           53 EPETRVAIKTVNEAASMRERIEFLNEASVMKEF--NCHHVVRLLGVVSQ-GQPTLVIMELMTRGDLKSYLRSLRPAMANN  129 (322)
T ss_dssp             EEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEEecccccCHHHHHHHHHHHHHHHhc--CCCCEeeeEEEEcc-CCccEEEEEeCCCCcHHHHHHHhchhhccC
Confidence            346789999998877777777788887777664  56677776665433 45789999999999999988642       


Q ss_pred             ---cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           93 ---VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        93 ---~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                         ...+...+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....||+.|+||
T Consensus       130 ~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  209 (322)
T 1p4o_A          130 PVLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSP  209 (322)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCH
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHCCCccCCCccceEEEcCCCeEEECcCccccccccccccccccCCCCCCCccCh
Confidence               234778899999999999999999999999    9999999999999999999754322     2334678899999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |..||.+.+      .......+..  +.                        
T Consensus       210 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~--~~------------------------  257 (322)
T 1p4o_A          210 ESLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVME--GG------------------------  257 (322)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHHT--TC------------------------
T ss_pred             hhhccCCCCchhhHHHHHHHHHHHHhcCCCccccCC------HHHHHHHHHc--CC------------------------
Confidence            99999899999999999999999999 889996543      2222222111  00                        


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC------cCcCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH------PWMSA  295 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h------pwf~~  295 (358)
                                     ....+...+..+.+||.+||+.||.+|||+.|+++|      +||+.
T Consensus       258 ---------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~~~~~~~~  304 (322)
T 1p4o_A          258 ---------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFRE  304 (322)
T ss_dssp             ---------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHHH
T ss_pred             ---------------cCCCCCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHhhccCCcc
Confidence                           011233456789999999999999999999999876      66654

>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}

Probab=99.97  E-value=7.9e-33  Score=262.38  Aligned_cols=225  Identities=14%  Similarity=0.197  Sum_probs=161.3

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~   97 (358)
                      ..+|..||+|.+......    ...++.+...+. ..|++++.+..... .....|+|||||.| +|.+++.... ...+
T Consensus        45 ~~~~~~vAvK~~~~~~~~----~~~~E~~~l~~l-~~HpnIv~l~~~~~-~~~~~~lv~E~~~g-~L~~~l~~~~~~~~~  117 (432)
T 3p23_A           45 MFDNRDVAVKRILPECFS----FADREVQLLRES-DEHPNVIRYFCTEK-DRQFQYIAIELCAA-TLQEYVEQKDFAHLG  117 (432)
T ss_dssp             ESSSSEEEEEEECTTTEE----ECHHHHHHHHHS-CCCTTBCCEEEEEE-ETTEEEEEEECCSE-EHHHHHHSSSCCCCS
T ss_pred             EeCCeEEEEEEECHHHHH----HHHHHHHHHHhc-cCCCCcCeEEEEEe-cCCEEEEEEECCCC-CHHHHHHhcCCCccc
Confidence            456788999988664433    234455444443 36788888765543 34567999999974 8888876543 4556


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccC-----CCcEEEEecCCceecCC------CCCCCccCCCcchhHH
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-----DVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEV  162 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-----~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~  162 (358)
                      ..+..++.|++.|+.|+|+.+++||    +|||++.     ...+||+|||+|+....      .....+||+.|+|||+
T Consensus       118 ~~~~~i~~qi~~aL~~LH~~~ivHrDlKp~NIll~~~~~~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~gt~~y~APE~  197 (432)
T 3p23_A          118 LEPITLLQQTTSGLAHLHSLNIVHRDLKPHNILISMPNAHGKIKAMISDFGLCKKLAVGRHSFSRRSGVPGTEGWIAPEM  197 (432)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTTCCCCCCSTTSEEECCCBTTTBCCEEECCTTEEECC------------CCSCTTSCCGGG
T ss_pred             hhHHHHHHHHHHHHHHHHHCcCEeCCCCHHHEEEecCCCCCceeEEEecccceeeccCCCcceeeccccCCCcCccChhh
Confidence            6778999999999999999999999    9999953     23578999999976542      2344689999999999


Q ss_pred             HhC---CCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          163 LLG---SKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       163 l~~---~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      +.+   ..++.++|||||||++|+|++ |..||....       ......   ..+.....                   
T Consensus       198 l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~-------~~~~~~---~~~~~~~~-------------------  248 (432)
T 3p23_A          198 LSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSL-------QRQANI---LLGACSLD-------------------  248 (432)
T ss_dssp             TSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTT-------THHHHH---HTTCCCCT-------------------
T ss_pred             hhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhh-------HHHHHH---HhccCCcc-------------------
Confidence            984   457889999999999999999 899995332       111111   11111000                   


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                      ........+..+.+||.+||+.||.+|||+.|+|+||||..
T Consensus       249 ----------------~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~hp~f~~  289 (432)
T 3p23_A          249 ----------------CLHPEKHEDVIARELIEKMIAMDPQKRPSAKHVLKHPFFWS  289 (432)
T ss_dssp             ----------------TSCTTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHTSTTTCC
T ss_pred             ----------------ccCccccccHHHHHHHHHHHhCCHhhCCCHHHHHhCccccC
Confidence                            00112234667889999999999999999999999999975

>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*

Probab=99.97  E-value=8.5e-33  Score=252.78  Aligned_cols=215  Identities=14%  Similarity=0.066  Sum_probs=167.1

Q ss_pred             cccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhhhHH
Q 045353           25 KENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSRDNE  103 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~~~  103 (358)
                      |++|.+..........++.++.+...++  .|++++.+.....  +...|+||||+.||+|.+++... ..+++..+..+
T Consensus        45 v~~K~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~  120 (325)
T 3kex_A           45 VCIKVIEDKSGRQSFQAVTDHMLAIGSL--DHAHIVRLLGLCP--GSSLQLVTQYLPLGSLLDHVRQHRGALGPQLLLNW  120 (325)
T ss_dssp             EEEEEECCTTSCSCBCSCCHHHHHHHTC--CCTTBCCEEEEEC--BSSEEEEEECCTTCBSHHHHHSSGGGSCTTHHHHH
T ss_pred             EEEEeccccccHHHHHHHHHHHHHHhcC--CCCCcCeEEEEEc--CCccEEEEEeCCCCCHHHHHHHccccCCHHHHHHH
Confidence            6777776666566667777777776663  6778888776554  45689999999999999988764 57888999999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|+.....     .....||+.|+|||++.+..++.++||
T Consensus       121 ~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di  200 (325)
T 3kex_A          121 GVQIAKGMYYLEEHGMVHRNLAARNVLLKSPSQVQVADFGVADLLPPDDKQLLYSEAKTPIKWMALESIHFGKYTHQSDV  200 (325)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCSSTTEEESSSSCEEECSCSGGGGSCCCTTCCC-----CCTTTSCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCccchheEEECCCCeEEECCCCcccccCcccccccccCCCCcccccChHHhccCCCChhhHh
Confidence            9999999999999999999    9999999999999999999765432     234467889999999999899999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++|+|++ |..||.+...      ......+... .                                       
T Consensus       201 ~slG~~l~el~~~g~~p~~~~~~------~~~~~~~~~~-~---------------------------------------  234 (325)
T 3kex_A          201 WSYGVTVWELMTFGAEPYAGLRL------AEVPDLLEKG-E---------------------------------------  234 (325)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTSCT------THHHHHHHTT-C---------------------------------------
T ss_pred             HHhHHHHHHHHhCCCCCccccCH------HHHHHHHHcC-C---------------------------------------
Confidence            999999999999 9999975441      1111111100 0                                       


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                       ....+..++..+.+||.+||..||.+|||+.++++|
T Consensus       235 -~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~el~~~  270 (325)
T 3kex_A          235 -RLAQPQICTIDVYMVMVKCWMIDENIRPTFKELANE  270 (325)
T ss_dssp             -BCCCCTTBCTTTTHHHHHHTCSCTTTSCCHHHHHHH
T ss_pred             -CCCCCCcCcHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             111223345677899999999999999999999886

>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A

Probab=99.97  E-value=2e-32  Score=245.22  Aligned_cols=220  Identities=14%  Similarity=0.150  Sum_probs=171.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      ..++..+|+|.+......  ...+.++.+...++  .+++++.+..... .....|+||||++||+|.+++.. ...+++
T Consensus        45 ~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  119 (283)
T 3gen_A           45 WRGQYDVAIKMIKEGSMS--EDEFIEEAKVMMNL--SHEKLVQLYGVCT-KQRPIFIITEYMANGCLLNYLREMRHRFQT  119 (283)
T ss_dssp             ETTTEEEEEEEECTTSBC--HHHHHHHHHHHHTC--CCTTBCCEEEEEC-SSSSEEEEECCCTTCBHHHHHHCGGGCCCH
T ss_pred             EcCCCeEEEEEecCCCCC--HHHHHHHHHHHhcC--CCCCEeeEEEEEe-cCCCeEEEEeccCCCcHHHHHHHhccCCCH
Confidence            445667899998765433  34566777766664  4677777766543 34568999999999999999876 456888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+..++
T Consensus       120 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  199 (283)
T 3gen_A          120 QQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFS  199 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCSGGGEEECTTSCEEECSTTGGGGBCCHHHHSTTSTTSCGGGCCHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCccCCCCccceEEEcCCCCEEEccccccccccccccccccCCccCcccCCHHHhccCCCC
Confidence            9999999999999999999999998    9999999999999999999765422    3344678889999999998999


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++||||+||++|+|++ |+.||....      .......+.....                                  
T Consensus       200 ~~~Dv~slG~~l~~l~t~g~~p~~~~~------~~~~~~~~~~~~~----------------------------------  239 (283)
T 3gen_A          200 SKSDIWAFGVLMWEIYSLGKMPYERFT------NSETAEHIAQGLR----------------------------------  239 (283)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHTTCC----------------------------------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCccccC------hhHHHHHHhcccC----------------------------------
Confidence            99999999999999998 999997544      2222222221110                                  


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                             ...+...++.+.+||.+||+.||.+|||+.++++|
T Consensus       240 -------~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  274 (283)
T 3gen_A          240 -------LYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  274 (283)
T ss_dssp             -------CCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             -------CCCCCcCCHHHHHHHHHHccCChhHCcCHHHHHHH
Confidence                   11223346788999999999999999999999876

>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*

Probab=99.97  E-value=1.6e-32  Score=245.65  Aligned_cols=218  Identities=14%  Similarity=0.117  Sum_probs=171.6

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      +..||+|.+..........++.++.+....+  .|++++.......  +...|+||||+.||+|.+++... ..++...+
T Consensus        40 ~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~  115 (281)
T 3cc6_A           40 KINVAVKTCKKDCTLDNKEKFMSEAVIMKNL--DHPHIVKLIGIIE--EEPTWIIMELYPYGELGHYLERNKNSLKVLTL  115 (281)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHHHHHHHH--CCTTBCCEEEEEC--SSSCEEEEECCTTCBHHHHHHHHTTTCCHHHH
T ss_pred             cceEEEEecccccCchHHHHHHHHHHHHHhC--CCCCcceEEEEEc--CCCCEEEEecCCCCCHHHHHHhccccCCHHHH
Confidence            3458999999888888888888888877775  5777777766543  34579999999999999998754 34788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCcch
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+..++.++
T Consensus       116 ~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  195 (281)
T 3cc6_A          116 VLYSLQICKAMAYLESINCVHRDIAVRNILVASPECVKLGDFGLSRYIEDEDYYKASVTRLPIKWMSPESINFRRFTTAS  195 (281)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEEETTEEEECCCCGGGCC---------CCCCCGGGCCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHCCcccCCCccceEEECCCCcEEeCccCCCcccccccccccccCCCCcceeCchhhccCCCCchh
Confidence            9999999999999999999998    9999999999999999999765432    2334678899999999988999999


Q ss_pred             hhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          173 DLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       173 DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      |||||||++|+|++ |+.||.....      ......+... .                                     
T Consensus       196 Di~slG~il~~llt~g~~p~~~~~~------~~~~~~~~~~-~-------------------------------------  231 (281)
T 3cc6_A          196 DVWMFAVCMWEILSFGKQPFFWLEN------KDVIGVLEKG-D-------------------------------------  231 (281)
T ss_dssp             HHHHHHHHHHHHHTTTCCTTTTSCG------GGHHHHHHHT-C-------------------------------------
T ss_pred             ccHHHHHHHHHHHhCCCCCcccCCh------HHHHHHHhcC-C-------------------------------------
Confidence            99999999999998 9999964431      1111111110 0                                     


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                         ....+...++.+.+||.+||..||++|||+.|++++
T Consensus       232 ---~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~  267 (281)
T 3cc6_A          232 ---RLPKPDLCPPVLYTLMTRCWDYDPSDRPRFTELVCS  267 (281)
T ss_dssp             ---CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ---CCCCCCCCCHHHHHHHHHHccCCchhCcCHHHHHHH
Confidence               011233456789999999999999999999999864

>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*

Probab=99.97  E-value=4.4e-33  Score=254.77  Aligned_cols=231  Identities=18%  Similarity=0.198  Sum_probs=153.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-----ccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-----SVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-----~~~   94 (358)
                      .+|..||+|.+..........++.++.....+. ..+++++........ ....|+||||+.| +|.+++..     ...
T Consensus        45 ~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~-~~h~niv~~~~~~~~-~~~~~lv~e~~~~-~l~~~~~~~~~~~~~~  121 (327)
T 3aln_A           45 PSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRS-SDCPYIVQFYGALFR-EGDCWICMELMST-SFDKFYKYVYSVLDDV  121 (327)
T ss_dssp             TTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSS-CCCTTBCCEEEEEEC-SSEEEEEECCCSE-EHHHHHHHHHHTTCCC
T ss_pred             CCCCEEEEEEeecccCchHHHHHHHHHHHHHHc-CCCCcEeeeeeEEEe-CCceEEEEeecCC-ChHHHHHHHHhhhccc
Confidence            467889999998776655555555555544333 467777777665443 3578999999997 66665542     456


Q ss_pred             cChhhhhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhHHH----
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVL----  163 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l----  163 (358)
                      +++..+..++.+++.++.++|.. +++|+    +|||++.++.+||+|||++......  .....||+.|+|||++    
T Consensus       122 ~~~~~~~~i~~~i~~~l~~lH~~~~ivH~dlkp~NIll~~~~~~kl~Dfg~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~  201 (327)
T 3aln_A          122 IPEEILGKITLATVKALNHLKENLKIIHRDIKPSNILLDRSGNIKLCDFGISGQLVDSIAKTRDAGCRPYMAPERIDPSA  201 (327)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHSCCCSCCCGGGEEEETTTEEEECCCSSSCC--------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHhccCCEeECCCCHHHEEEcCCCCEEEccCCCceecccccccccCCCCccccCceeecccc
Confidence            78889999999999999999998 99999    9999999999999999999765432  2334799999999999    


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          164 LGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      .+..++.++|||||||++|+|++|..||.+.....     +.   +..+....+.                    ..   
T Consensus       202 ~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-----~~---~~~~~~~~~~--------------------~~---  250 (327)
T 3aln_A          202 SRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF-----DQ---LTQVVKGDPP--------------------QL---  250 (327)
T ss_dssp             ----CCSHHHHHHHHHHHHHHHHSCCCSSCC---------------CCCCCSCCC--------------------CC---
T ss_pred             CcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH-----HH---HHHHhcCCCC--------------------CC---
Confidence            45568999999999999999999999997533110     00   0000000000                    00   


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                 ........++.+.+||.+||+.||++|||+.++++||||..
T Consensus       251 -----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~hp~~~~  291 (327)
T 3aln_A          251 -----------SNSEEREFSPSFINFVNLCLTKDESKRPKYKELLKHPFILM  291 (327)
T ss_dssp             -----------CCCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSHHHHH
T ss_pred             -----------CCcccccCCHHHHHHHHHHhhCChhhCcCHHHHHhChHHHH
Confidence                       00112234678999999999999999999999999999974

>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*

Probab=99.97  E-value=1.4e-32  Score=245.55  Aligned_cols=219  Identities=15%  Similarity=0.111  Sum_probs=162.6

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc--cC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV--NN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~--~~   96 (358)
                      ..+|..+|+|.+....   ..+++.++.+...++  .|++++.............|+||||++||+|.+++.....  ++
T Consensus        41 ~~~~~~vavK~~~~~~---~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  115 (278)
T 1byg_A           41 DYRGNKVAVKCIKNDA---TAQAFLAEASVMTQL--RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLG  115 (278)
T ss_dssp             EETTEEEEEEECCCCC-----HHHHHTHHHHTTC--CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCC
T ss_pred             EEcCCEEEEEEecchh---HHHHHHHHHHHHHhC--CCCCEeeEEEEEEcCCCceEEEEecCCCCCHHHHHHhcccccCC
Confidence            3457789999987543   445666776666653  5777887777655555678999999999999999875443  67


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcch
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++...........+|+.|+|||++.+..++.++
T Consensus       116 ~~~~~~~~~~i~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~  195 (278)
T 1byg_A          116 GDCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKS  195 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCccccCCCcceEEEeCCCcEEEeeccccccccccccCCCccccccCHHHhCCCCCCchh
Confidence            88899999999999999999999998    99999999999999999998766555566789999999999998999999


Q ss_pred             hhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          173 DLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       173 DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      |||||||++|+|++ |..||.....      .+....+..   .                                    
T Consensus       196 Di~slG~il~~l~t~g~~p~~~~~~------~~~~~~~~~---~------------------------------------  230 (278)
T 1byg_A          196 DVWSFGILLWEIYSFGRVPYPRIPL------KDVVPRVEK---G------------------------------------  230 (278)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCTTSCG------GGHHHHHTT---T------------------------------------
T ss_pred             cHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHHhc---C------------------------------------
Confidence            99999999999998 9999965431      111111100   0                                    


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                        .....+...++.+.+||.+||..||.+|||+.|+++
T Consensus       231 --~~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  266 (278)
T 1byg_A          231 --YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLRE  266 (278)
T ss_dssp             --CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             --CCCCCcccCCHHHHHHHHHHhcCChhhCCCHHHHHH
Confidence              011223445788999999999999999999999875

>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}

Probab=99.97  E-value=3.6e-32  Score=268.56  Aligned_cols=224  Identities=15%  Similarity=0.145  Sum_probs=176.4

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      ++..||+|++...........+.++++...++  .|++++.+......  ..+|+|||||.||+|.+++... ..+++.+
T Consensus       362 ~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l--~hpniv~l~~~~~~--~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~  437 (613)
T 2ozo_A          362 KQIDVAIKVLKQGTEKADTEEMMREAQIMHQL--DNPYIVRLIGVCQA--EALMLVMEMAGGGPLHKFLVGKREEIPVSN  437 (613)
T ss_dssp             CEEEEEEEECCCCCSSTTHHHHHHHHHHHTTC--CCTTBCCEEEEEES--SSEEEEEECCTTCBHHHHHTTCTTTSCHHH
T ss_pred             CcEEEEEEEcCCCCChHHHHHHHHHHHHHHhC--CCCCEeeEEEEecc--CCeEEEEEeCCCCcHHHHHhhccCCCCHHH
Confidence            45579999999887777788888888888774  67888888776543  4589999999999999988643 4578899


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....      .....+|+.|+|||++.+..|+
T Consensus       438 ~~~i~~qi~~~L~~LH~~~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~y~APE~~~~~~~~  517 (613)
T 2ozo_A          438 VAELLHQVSMGMKYLEEKNFVHRNLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFS  517 (613)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCSTTTTCC--------------CCTTSCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCEEcCcCCHHHEEEcCCCcEEEeeccCcccccCCCceeeeccCCCCccceeCHhhhcCCCCC
Confidence            99999999999999999999999    9999999999999999999765322      1122456899999999998999


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |+.||.+.+      ..+....+..  +.                                 
T Consensus       518 ~~sDvwSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~--~~---------------------------------  556 (613)
T 2ozo_A          518 SRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK---------------------------------  556 (613)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCC------SHHHHHHHHT--TC---------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHCCCCCCCCCC------HHHHHHHHHc--CC---------------------------------
Confidence            99999999999999998 999997654      2222222211  00                                 


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh---cCcCcCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL---SHPWMSA  295 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL---~hpwf~~  295 (358)
                            ....+..+++.+.+||.+||..||++|||+.+++   ++.|+..
T Consensus       557 ------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~  600 (613)
T 2ozo_A          557 ------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSL  600 (613)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHH
T ss_pred             ------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence                  1123445678899999999999999999999984   5566554

>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}

Probab=99.97  E-value=2.2e-32  Score=250.97  Aligned_cols=250  Identities=14%  Similarity=0.124  Sum_probs=164.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCC----CCCCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEAD----SKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..||+|++...    .+..+.++..........+++++.....    ........|+|||||+||+|.+++.... .
T Consensus        34 ~~~~~vavK~~~~~----~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~~-~  108 (336)
T 3g2f_A           34 LDERPVAVKVFSFA----NRQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRMEYLLVMEYYPNGSLXKYLSLHT-S  108 (336)
T ss_dssp             ETTEEEEEEEEEGG----GHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEEEEEEECCCTTCBHHHHHHHCC-B
T ss_pred             ECCeEEEEEEeecc----chhhHHHHHHHHHHHhccCcchhhheecccccccCCCceEEEEEecCCCCcHHHHHhhcc-c
Confidence            36778999988532    2333333433333333567777776531    2223345789999999999999986544 3


Q ss_pred             ChhhhhHHHHhhhhccccccCC---------CCCCc----ccccccCCCcEEEEecCCceecCCC-----------CCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRP---------SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----------FTND  151 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~---------~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----------~~~~  151 (358)
                      .+..+..++.+++.|+.|+|+.         +++|+    +|||++.++.+||+|||+|......           ....
T Consensus       109 ~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kL~DFG~a~~~~~~~~~~~~~~~~~~~~~  188 (336)
T 3g2f_A          109 DWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTCVISDFGLSMRLTGNRLVRPGEEDNAAISE  188 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCEEECCCTTCEECSSSSCC---------CCT
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcEEEeeccceeecccccccCccccccccccC
Confidence            7788889999999999999999         99999    9999999999999999999765321           2345


Q ss_pred             ccCCCcchhHHHhC-------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCC
Q 045353          152 IQTRQYRCPEVLLG-------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGG  224 (358)
Q Consensus       152 ~gt~~Y~aPE~l~~-------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~  224 (358)
                      +||+.|+|||++.+       ..++.++|||||||++|+|++|..||...........     .+....+..|.....  
T Consensus       189 ~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~--  261 (336)
T 3g2f_A          189 VGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGESVPEYQM-----AFQTEVGNHPTFEDM--  261 (336)
T ss_dssp             TSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTSCCCCCCC-----TTHHHHCSSCCHHHH--
T ss_pred             CCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCccchhHHHH-----hhhcccCCCchHHHH--
Confidence            79999999999987       3467789999999999999999776643332111000     000001111100000  


Q ss_pred             CCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHH------hcCcCcCCC
Q 045353          225 RYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC------LSHPWMSAG  296 (358)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~el------L~hpwf~~~  296 (358)
                         ........            ........+......++.+.+||.+||+.||++|||+.|+      +.++|-+..
T Consensus       262 ---~~~~~~~~------------~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ll~~~~~~~  324 (336)
T 3g2f_A          262 ---QVLVSREK------------QRPKFPEAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAELMMIWERNK  324 (336)
T ss_dssp             ---HHHHTTSC------------CCCCCCTTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHCCCC--
T ss_pred             ---Hhhhcccc------------cCCCCCcccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHHHHHHHHhcc
Confidence               00000000            0000000111223457789999999999999999999999      457888764

>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*

Probab=99.97  E-value=5e-32  Score=248.20  Aligned_cols=223  Identities=13%  Similarity=0.008  Sum_probs=167.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..||+|++.....   ...+.++.+...++ ..+++++.+...... ....|+||||+ ||+|.+++.. ...+++.
T Consensus        32 ~~~~~vavK~~~~~~~---~~~~~~E~~~l~~l-~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~  105 (330)
T 2izr_A           32 YTNEYVAIKLEPMKSR---APQLHLEYRFYKQL-GSGDGIPQVYYFGPC-GKYNAMVLELL-GPSLEDLFDLCDRTFSLK  105 (330)
T ss_dssp             TTTEEEEEEEEETTCS---SCCHHHHHHHHHHH-CSCTTSCCEEEEEEE-TTEEEEEEECC-CCBHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEEEeccccc---hHHHHHHHHHHHHh-hCCCCCCEEEEEEec-CCccEEEEEeC-CCCHHHHHHHcCCCCCHH
Confidence            5678899998865432   23456666666554 256666666554433 45679999999 9999998875 3568899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCc-----EEEEecCCceecCCC----------CCCCccCCCcch
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ-----CKLVDFGNACWTHKQ----------FTNDIQTRQYRC  159 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~-----vkL~DFG~a~~~~~~----------~~~~~gt~~Y~a  159 (358)
                      .+..++.+++.|+.|+|+.+++||    +|||++.++.     +||+|||+|+.....          ....+||+.|+|
T Consensus       106 ~~~~i~~qi~~~l~~LH~~~iiHrDlkp~Nill~~~~~~~~~~~kl~DFg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~a  185 (330)
T 2izr_A          106 TVLMIAIQLISRMEYVHSKNLIYRDVKPENFLIGRPGNKTQQVIHIIDFALAKEYIDPETKKHIPYREHKSLTGTARYMS  185 (330)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTCTTSEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeccCCCHHHeeeccCCCCCCceEEEEEcccceeeecCCCCccccccccCCcCCCccccC
Confidence            999999999999999999999999    9999999887     999999999764322          235689999999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ||++.+..++.++|||||||++|+|++|..||.+.+...   .......+.......+..                    
T Consensus       186 PE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~~---~~~~~~~i~~~~~~~~~~--------------------  242 (330)
T 2izr_A          186 INTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADT---LKERYQKIGDTKRATPIE--------------------  242 (330)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCSS---HHHHHHHHHHHHHHSCHH--------------------
T ss_pred             hHHHcCCCCCchhHHHHHHHHHHHHhcCCCCcccccccc---HHHHHHHHHhhhccCCHH--------------------
Confidence            999999999999999999999999999999997654221   122222221111111100                    


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                       ......+ .+.+||..||..||.+|||++++++
T Consensus       243 -----------------~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~  274 (330)
T 2izr_A          243 -----------------VLCENFP-EMATYLRYVRRLDFFEKPDYDYLRK  274 (330)
T ss_dssp             -----------------HHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             -----------------HHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHH
Confidence                             0011234 8999999999999999999998865

>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}

Probab=99.97  E-value=2.2e-32  Score=248.88  Aligned_cols=229  Identities=18%  Similarity=0.175  Sum_probs=160.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..||+|.+..........+..++.....+. ..|++++........ ....|+||||+ |+.+..+... ...+++.
T Consensus        48 ~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~i~~~~~~~~~-~~~~~lv~e~~-~~~~~~l~~~~~~~~~~~  124 (318)
T 2dyl_A           48 KTGHVIAVKQMRRSGNKEENKRILMDLDVVLKS-HDCPYIVQCFGTFIT-NTDVFIAMELM-GTCAEKLKKRMQGPIPER  124 (318)
T ss_dssp             TTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHT-TTCTTBCCEEEEEEC-SSEEEEEECCC-SEEHHHHHHHHTSCCCHH
T ss_pred             cCCeEEEEEEecccccchHHHHHHHHHHHHHHh-cCCCceeeEEEEEec-CCcEEEEEecc-CCcHHHHHHHhccCCCHH
Confidence            368889999998765544444444443333332 366777777665433 35789999999 5555554432 4567888


Q ss_pred             hhhHHHHhhhhccccccCC-CCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHh-----CC
Q 045353           99 SRDNEVKNTSQGVKGHRRP-SRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLL-----GS  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~-~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~-----~~  166 (358)
                      .+..++.+++.++.++|.. +++|+    +|||++.++.+||+|||++.....  ......||+.|+|||++.     +.
T Consensus       125 ~~~~~~~~i~~~l~~lH~~~~i~H~dlkp~Nil~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~  204 (318)
T 2dyl_A          125 ILGKMTVAIVKALYYLKEKHGVIHRDVKPSNILLDERGQIKLCDFGISGRLVDDKAKDRSAGCAAYMAPERIDPPDPTKP  204 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCCCCCCGGGEEECTTSCEEECCCTTC--------------CCTTCCHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHHHhhCCEEeCCCCHHHEEECCCCCEEEEECCCchhccCCccccccCCCccccChhhccccccccc
Confidence            9999999999999999995 99998    999999999999999999965432  234457999999999995     44


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||.....     ....+..+..  +..+                             
T Consensus       205 ~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~~~~~--~~~~-----------------------------  248 (318)
T 2dyl_A          205 DYDIRADVWSLGISLVELATGQFPYKNCKT-----DFEVLTKVLQ--EEPP-----------------------------  248 (318)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSSCTTTTCCS-----HHHHHHHHHH--SCCC-----------------------------
T ss_pred             CCccccchhhHHHHHHHHHhCCCCCCCCCc-----cHHHHHHHhc--cCCC-----------------------------
Confidence            589999999999999999999999964321     2222222221  1100                             


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                              ........+..+.+||.+||+.||.+|||++++++||||+.
T Consensus       249 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h~~~~~  289 (318)
T 2dyl_A          249 --------LLPGHMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEHSFIKR  289 (318)
T ss_dssp             --------CCCSSSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTSHHHHH
T ss_pred             --------CCCccCCCCHHHHHHHHHHccCChhHCcCHHHHhhCHHHHh
Confidence                    00111234678999999999999999999999999999974

>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...

Probab=99.97  E-value=1.1e-32  Score=252.37  Aligned_cols=215  Identities=14%  Similarity=0.101  Sum_probs=164.4

Q ss_pred             cccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhHH
Q 045353           25 KENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDNE  103 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~  103 (358)
                      ||+|.+....+....+++.++.+...++  .|++++.+......  ...++||||+.+|+|.+++.. ...+++..+..+
T Consensus        47 vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~--~~~~~v~e~~~~g~L~~~l~~~~~~~~~~~~~~~  122 (327)
T 3poz_A           47 VAIKELREATSPKANKEILDEAYVMASV--DNPHVCRLLGICLT--STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW  122 (327)
T ss_dssp             EEEEEC-------CHHHHHHHHHHHHHC--CBTTBCCEEEEEES--SSEEEEEECCTTCBHHHHHHHSTTSCCHHHHHHH
T ss_pred             EEEeecccccCHHHHHHHHHHHHHHHhC--CCCCEeEEEEEEec--CCeEEEEEecCCCcHHHHHHhcCCCCCHHHHHHH
Confidence            5788887777777778888888877774  57788877766543  347899999999999998875 456788899999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....     .....||+.|+|||++.+..|+.++||
T Consensus       123 ~~qi~~~l~~LH~~~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di  202 (327)
T 3poz_A          123 CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDV  202 (327)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTHHHHHTTTCC-------CCCGGGSCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHhhCCeeCCCCChheEEECCCCCEEEccCcceeEccCCcccccccCCCccccccChHHhccCCCCchhhh
Confidence            9999999999999999999    9999999999999999999765432     223356889999999999999999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++|+|++ |..||.+...      ......+. ...                                       
T Consensus       203 ~slG~il~ellt~g~~p~~~~~~------~~~~~~~~-~~~---------------------------------------  236 (327)
T 3poz_A          203 WSYGVTVWELMTFGSKPYDGIPA------SEISSILE-KGE---------------------------------------  236 (327)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCCG------GGHHHHHH-TTC---------------------------------------
T ss_pred             hhhHHHHHHHHhcCCCCccCCCH------HHHHHHHH-cCC---------------------------------------
Confidence            999999999999 9999975441      11111111 000                                       


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                       ....+...+..+.+|+.+||+.||.+|||+.|++++
T Consensus       237 -~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~  272 (327)
T 3poz_A          237 -RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIE  272 (327)
T ss_dssp             -CCCCCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHH
T ss_pred             -CCCCCccCCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence             112234456789999999999999999999999875

>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...

Probab=99.97  E-value=5e-32  Score=244.41  Aligned_cols=218  Identities=16%  Similarity=0.092  Sum_probs=170.9

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~  101 (358)
                      ..+|+|.+..........++.++.+...++  .|++++.............|+||||++||+|.+++.. ....+...+.
T Consensus        54 ~~~avk~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~  131 (298)
T 3f66_A           54 IHCAVKSLNRITDIGEVSQFLTEGIIMKDF--SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLI  131 (298)
T ss_dssp             EEEEEEEETTCCSHHHHHHHHHHHHHHHTC--CCTTBCCCCEEECCSSSCCEEEEECCTTCBHHHHHHCTTCCCCHHHHH
T ss_pred             eEEEEEecccCCCHHHHHHHHHHHHHHHhC--CCCCEeeeeeEEEcCCCceEEEEeCCCCCCHHHHHHhcccCCCHHHHH
Confidence            357999998877777778888888777764  5788888877655566788999999999999999875 3457788899


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCCCCc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......       .....||+.|+|||++.+..++.
T Consensus       132 ~i~~ql~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  211 (298)
T 3f66_A          132 GFGLQVAKGMKYLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEYYSVHNKTGAKLPVKWMALESLQTQKFTT  211 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSCGGGCCCSCGGGCBC-----CCBCGGGSCHHHHHHCCCCH
T ss_pred             HHHHHHHHHHHHHHhCCccCCCCchheEEECCCCCEEECcccccccccccchhccccccCCCCCccccChHHhcCCCCCh
Confidence            999999999999999999999    9999999999999999999754321       23446788999999999999999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |.+||.+....      +....+..  +.                                  
T Consensus       212 ~~Di~slG~il~~l~~~~~~~~~~~~~~------~~~~~~~~--~~----------------------------------  249 (298)
T 3f66_A          212 KSDVWSFGVLLWELMTRGAPPYPDVNTF------DITVYLLQ--GR----------------------------------  249 (298)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTSCTT------THHHHHHT--TC----------------------------------
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCccCCHH------HHHHHHhc--CC----------------------------------
Confidence            9999999999999999 56667544321      11111110  00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+...+..+.+||.+||+.||.+|||+.|+++
T Consensus       250 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  284 (298)
T 3f66_A          250 -----RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVS  284 (298)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCccCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                 01122334678999999999999999999999976

>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...

Probab=99.97  E-value=7.5e-32  Score=242.38  Aligned_cols=221  Identities=19%  Similarity=0.213  Sum_probs=160.2

Q ss_pred             cccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhh
Q 045353           23 ASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~  100 (358)
                      ..+|+|.+.... +.....+++++.+...++  .+++++......  .....++|||||+||+|.+++.. ...+++..+
T Consensus        47 ~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  122 (289)
T 3og7_A           47 GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKT--RHVNILLFMGYS--TAPQLAIVTQWCEGSSLYHHLHASETKFEMKKL  122 (289)
T ss_dssp             SEEEEEEESCSSCCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEE--CSSSCEEEEECCCEEEHHHHHTTC---CCHHHH
T ss_pred             CceEEEEEeccCCCHHHHHHHHHHHHHHHhC--CCCcEEEEEeec--cCCccEEEEEecCCCcHHHHHhhccCCCCHHHH
Confidence            358888886544 445567777887777663  567777666543  34568999999999999998853 456788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHh---CCCC
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLL---GSKY  168 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~---~~~~  168 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++.....     ......||+.|+|||++.   +..+
T Consensus       123 ~~i~~qi~~~L~~lH~~~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~  202 (289)
T 3og7_A          123 IDIARQTARGMDYLHAKSIIHRDLKSNNIFLHEDNTVKIGDFGLATEKSRWSGSHQFEQLSGSILWMAPEVIRMQDSNPY  202 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTTEEEECCCC------------------CCCTTCCHHHHC----CCS
T ss_pred             HHHHHHHHHHHHHHHhCCcccccCccceEEECCCCCEEEccceeccccccccccccccccCCCccccCchhhcccCCCCC
Confidence            9999999999999999999999    999999999999999999975432     234457999999999997   5568


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||.+..      ....+..+.......+.                              
T Consensus       203 ~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~~~~~~~~------------------------------  246 (289)
T 3og7_A          203 SFQSDVYAFGIVLYELMTGQLPYSNIN------NRDQIIEMVGRGSLSPD------------------------------  246 (289)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTSSCC------CHHHHHHHHHHTSCCCC------------------------------
T ss_pred             CcccchHHHHHHHHHHHHCCCCccccc------hHHHHHHHhcccccCcc------------------------------
Confidence            999999999999999999999997544      23333332222111110                              


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            .......+++.+.+||.+||..||.+|||+.++++
T Consensus       247 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~  281 (289)
T 3og7_A          247 ------LSKVRSNCPKRMKRLMAECLKKKRDERPSFPRILA  281 (289)
T ss_dssp             ------TTSSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------hhhccccCCHHHHHHHHHHccCChhhCCCHHHHHH
Confidence                  00122345678999999999999999999999985

>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=5.1e-32  Score=248.51  Aligned_cols=219  Identities=15%  Similarity=0.183  Sum_probs=169.3

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      +..||+|.+........+..+.++.+...++  .+++++........ ....|+||||++||+|.+++... ..+++.++
T Consensus        73 ~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  149 (333)
T 1mqb_A           73 EVPVAIKTLKAGYTEKQRVDFLGEAGIMGQF--SHHNIIRLEGVISK-YKPMMIITEYMENGALDKFLREKDGEFSVLQL  149 (333)
T ss_dssp             EEEEEEEEECTTCCHHHHHHHHHHHHHHHTC--CCTTBCCEEEEECS-SSSEEEEEECCTTEEHHHHHHHTTTCSCHHHH
T ss_pred             cccEEEEEcCCCCCHHHHHHHHHHHHHHHhC--CCCCCCcEEEEEec-CCCcEEEEeCCCCCcHHHHHHhCCCCCCHHHH
Confidence            3458999999888888888888888877764  67777777665443 46789999999999999998753 56888999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCCc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....+|+.|+|||++.+..++.
T Consensus       150 ~~i~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  229 (333)
T 1mqb_A          150 VGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTS  229 (333)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCH
T ss_pred             HHHHHHHHHHHHHHHhCCeeCCCCChheEEECCCCcEEECCCCcchhhccccccccccCCCCccccccCchhcccCCCCc
Confidence            9999999999999999999999    9999999999999999999765432      12235678899999999999999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |..||.+..      .......+....                                    
T Consensus       230 ~~Di~slG~il~ellt~g~~pf~~~~------~~~~~~~~~~~~------------------------------------  267 (333)
T 1mqb_A          230 ASDVWSFGIVMWEVMTYGERPYWELS------NHEVMKAINDGF------------------------------------  267 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTTC------------------------------------
T ss_pred             hhhhHHHHHHHHHHHcCCCCCcccCC------HHHHHHHHHCCC------------------------------------
Confidence            9999999999999998 999996543      222222221100                                    


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                           ....+...+..+.+||.+||+.||++|||+.+++++
T Consensus       268 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~  303 (333)
T 1mqb_A          268 -----RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSI  303 (333)
T ss_dssp             -----CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             -----cCCCcccCCHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                 011223446788999999999999999999998764

>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*

Probab=99.97  E-value=2.1e-32  Score=243.13  Aligned_cols=220  Identities=15%  Similarity=0.151  Sum_probs=169.8

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~   97 (358)
                      ..++..+|+|.+......  ...+.++.+...++  .+++++....... .....|+||||++||+|.+++.... .+++
T Consensus        29 ~~~~~~vavK~~~~~~~~--~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  103 (268)
T 3sxs_A           29 WKGQYDVAVKMIKEGSMS--EDEFFQEAQTMMKL--SHPKLVKFYGVCS-KEYPIYIVTEYISNGCLLNYLRSHGKGLEP  103 (268)
T ss_dssp             ETTTEEEEEEEECBTTBC--HHHHHHHHHHHHHC--CCTTBCCEEEEEC-SSSSEEEEEECCTTCBHHHHHHHHGGGCCH
T ss_pred             ecCceeEEEEEeccCCCc--HHHHHHHHHHHHhC--CCCCEeeEEEEEc-cCCceEEEEEccCCCcHHHHHHHcCCCCCH
Confidence            445567899988764433  34566776666664  5677777766543 3456899999999999999987654 4888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+..++
T Consensus       104 ~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  183 (268)
T 3sxs_A          104 SQLLEMCYDVCEGMAFLESHQFIHRDLAARNCLVDRDLCVKVSDFGMTRYVLDDQYVSSVGTKFPVKWSAPEVFHYFKYS  183 (268)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEEESSCSGGGEEECTTCCEEECCTTCEEECCTTCEEECCSCCCCGGGCCHHHHHHSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeecCCcCcceEEECCCCCEEEccCccceecchhhhhcccCCCcCcccCCHHHHhccCCc
Confidence            9999999999999999999999998    9999999999999999999765432    2334567789999999998899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||....      .......+....                                   
T Consensus       184 ~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~~~-----------------------------------  222 (268)
T 3sxs_A          184 SKSDVWAFGILMWEVFSLGKMPYDLYT------NSEVVLKVSQGH-----------------------------------  222 (268)
T ss_dssp             TTHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHTTC-----------------------------------
T ss_pred             hhhhhHHHHHHHHHHHcCCCCCccccC------hHHHHHHHHcCC-----------------------------------
Confidence            99999999999999999 999996543      222222221100                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                            ....+...++.+.+||.+||+.||++|||+.++++|
T Consensus       223 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (268)
T 3sxs_A          223 ------RLYRPHLASDTIYQIMYSCWHELPEKRPTFQQLLSS  258 (268)
T ss_dssp             ------CCCCCTTSCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ------CCCCCCcChHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                  011223346788999999999999999999999976

>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=6.9e-32  Score=247.54  Aligned_cols=229  Identities=15%  Similarity=0.146  Sum_probs=162.2

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC---CCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS---PDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      +|..||+|++..    .......++..........|++++..........   ...|+|||||+||+|.+++... .+++
T Consensus        59 ~~~~vavK~~~~----~~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~  133 (337)
T 3mdy_A           59 RGEKVAVKVFFT----TEEASWFRETEIYQTVLMRHENILGFIAADIKGTGSWTQLYLITDYHENGSLYDYLKST-TLDA  133 (337)
T ss_dssp             TTEEEEEEEEEG----GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEESCGGGCEEEEEECCCTTCBHHHHHHHC-CBCH
T ss_pred             CCceEEEEEEec----cccchhhhHHHHHHHHhhcCCCeeeEEEEEccCCCCCCceEEEEeccCCCcHHHHhhcc-CCCH
Confidence            477899998743    2333444444444444457777777765543322   5789999999999999998654 5788


Q ss_pred             hhhhHHHHhhhhccccccCC--------CCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHRRP--------SRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~--------~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~  158 (358)
                      ..+..++.+++.++.++|..        +++|+    +|||++.++.+||+|||+|......       ....+||+.|+
T Consensus       134 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~gt~~y~  213 (337)
T 3mdy_A          134 KSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVKFISDTNEVDIPPNTRVGTKRYM  213 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSCEEECCCTTCEECC---------CCSSCSCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCCEEEEeCCCceeeccccccccCCCCCCccCccee
Confidence            89999999999999999998        99999    9999999999999999999765322       12458999999


Q ss_pred             hhHHHhCCCCCcc------hhhhhhhHHHHhhhcCC----------cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          159 CPEVLLGSKYSTS------ADLWSFACICFELATGD----------VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       159 aPE~l~~~~~~~~------~DiwSlGvil~ell~g~----------~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                      |||++.+..++..      +|||||||++|+|++|.          .||........  ....+..........+.    
T Consensus       214 aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~----  287 (337)
T 3mdy_A          214 PPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVEEYQLPYHDLVPSDP--SYEDMREIVCIKKLRPS----  287 (337)
T ss_dssp             CHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC--CHHHHHHHHTTSCCCCC----
T ss_pred             ChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccccccccHhhhcCCCC--chhhhHHHHhhhccCcc----
Confidence            9999998776554      99999999999999994          44433221110  11111111100000000    


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                                    .........++..+.+||.+||+.||++|||+.|+++|
T Consensus       288 ------------------------------~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  325 (337)
T 3mdy_A          288 ------------------------------FPNRWSSDECLRQMGKLMTECWAHNPASRLTALRVKKT  325 (337)
T ss_dssp             ------------------------------CCGGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             ------------------------------ccccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHHHH
Confidence                                          00001123567889999999999999999999999875

>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}

Probab=99.97  E-value=2.6e-32  Score=251.63  Aligned_cols=229  Identities=14%  Similarity=0.083  Sum_probs=166.5

Q ss_pred             cCcccccccccCccchhhh----------HHhhHHHHHhhhhccCCCccccccCCCCC---CCCCCCcccccCCCCCccc
Q 045353           21 SSASKENKSLYGDLTKNQK----------KKVKKKAKKAAQGCAGTEAFDESEADSKP---SSPDNFSVDTIPNGVSVEE   87 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~iv~e~~~gg~L~~   87 (358)
                      ++..+|+|.....-....+          ..+.++......  ..+++++.+......   .....|+||||| ||+|.+
T Consensus        64 ~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~--l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~-~~~L~~  140 (345)
T 2v62_A           64 KDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQ--LDYLGIPLFYGSGLTEFKGRSYRFMVMERL-GIDLQK  140 (345)
T ss_dssp             GGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHT--CSCCCCCCEEEEEEEESSSCEEEEEEEECE-EEEHHH
T ss_pred             ccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhcc--ccccCcceeecccccccCCCcEEEEEEecc-CCCHHH
Confidence            6677888888765322111          111122222222  466777766655332   256789999999 999999


Q ss_pred             ccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC--cEEEEecCCceecCCC----------CCCC
Q 045353           88 RQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV--QCKLVDFGNACWTHKQ----------FTND  151 (358)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~--~vkL~DFG~a~~~~~~----------~~~~  151 (358)
                      ++.....+++.++..++.+++.|+.|+|+.+++|+    +|||++.++  .+||+|||+|+.....          ....
T Consensus       141 ~l~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~Dlkp~NIll~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~  220 (345)
T 2v62_A          141 ISGQNGTFKKSTVLQLGIRMLDVLEYIHENEYVHGDIKAANLLLGYKNPDQVYLADYGLSYRYCPNGNHKQYQENPRKGH  220 (345)
T ss_dssp             HCBGGGBCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEESSSTTSEEECCCTTCEESSGGGCCCCCCCCGGGCS
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHHHhCCeeCCCcCHHHEEEccCCCCcEEEEeCCCceecccccccccchhcccccc
Confidence            99887788999999999999999999999999999    999999887  9999999999765321          1445


Q ss_pred             ccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh
Q 045353          152 IQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF  231 (358)
Q Consensus       152 ~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  231 (358)
                      .||+.|+|||++.+..++.++|||||||++|+|++|+.||.+...    ................|....          
T Consensus       221 ~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~----~~~~~~~~~~~~~~~~~~~~~----------  286 (345)
T 2v62_A          221 NGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQNLK----DPVAVQTAKTNLLDELPQSVL----------  286 (345)
T ss_dssp             CSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGGTT----CHHHHHHHHHHHHHTTTHHHH----------
T ss_pred             CCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccccc----ccHHHHHHHHhhcccccHHHH----------
Confidence            899999999999999999999999999999999999999964321    122222222222222222110          


Q ss_pred             hccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                             ........+..+.+||.+||..||++|||++++++
T Consensus       287 -----------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  321 (345)
T 2v62_A          287 -----------------------KWAPSGSSCCEIAQFLVCAHSLAYDEKPNYQALKK  321 (345)
T ss_dssp             -----------------------HHSCTTSCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -----------------------hhccccccHHHHHHHHHHHhhcCcccCCCHHHHHH
Confidence                                   00011144678999999999999999999999876

>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...

Probab=99.97  E-value=3.7e-32  Score=244.96  Aligned_cols=236  Identities=13%  Similarity=0.083  Sum_probs=169.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCccccccccc-ccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQNDSV-VNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~   97 (358)
                      .+|..||+|.+... .....+++.++.+...++  .|++++........ .....|+|||||+||+|.+++.... .+++
T Consensus        37 ~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  113 (295)
T 3ugc_A           37 NTGEVVAVKKLQHS-TEEHLRDFEREIEILKSL--QHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERIDH  113 (295)
T ss_dssp             SCCEEEEEEEESCC-CHHHHHHHHHHHHHHHTC--CCTTBCCEEEEECHHHHTSCEEEEECCTTCBHHHHHHHCGGGCCH
T ss_pred             CCCcEEEEEEcccC-CHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEecCCCCceEEEEEeCCCCCHHHHHHhcccccCH
Confidence            46778999998754 344556777777777664  57777777654332 2356899999999999999987543 4888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......      .....+|..|+|||++.+..
T Consensus       114 ~~~~~~~~qi~~~l~~lH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  193 (295)
T 3ugc_A          114 IKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEFFKVKEPGESPIFWYAPESLTESK  193 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCSCC-------------CTTCGGGGCCHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCcccCCCCHhhEEEcCCCeEEEccCcccccccCCcceeeeccCCCCccceeCcHHhcCCC
Confidence            8999999999999999999999999    9999999999999999999765432      22345778899999999999


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||....           .......+..+....        ...     ....      
T Consensus       194 ~~~~~Di~slG~~l~~l~~g~~~~~~~~-----------~~~~~~~~~~~~~~~--------~~~-----~~~~------  243 (295)
T 3ugc_A          194 FSVASDVWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQM--------IVF-----HLIE------  243 (295)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCTTCSHH-----------HHHHHHHCTTCCTHH--------HHH-----HHHH------
T ss_pred             CChHHHHHHHHHHHHHHHhcccccCCCh-----------HHHHhhhcCccccch--------hHH-----HHHH------
Confidence            9999999999999999999999885321           011111111110000        000     0000      


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       ..........+..+++.+.+||.+||+.||++|||+.|+++
T Consensus       244 -~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~  284 (295)
T 3ugc_A          244 -LLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  284 (295)
T ss_dssp             -HHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -HHhccCcCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHH
Confidence             00000012334566789999999999999999999999975

>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*

Probab=99.97  E-value=2.1e-32  Score=250.37  Aligned_cols=226  Identities=15%  Similarity=0.141  Sum_probs=175.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .+|..||+|.+....+.....++.++.+...++  .|++++........ ....|+||||++||+|.+++...       
T Consensus        58 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~  134 (327)
T 2yfx_A           58 PSPLQVAVKTLPEVCSEQDELDFLMEALIISKF--NHQNIVRCIGVSLQ-SLPRFILMELMAGGDLKSFLRETRPRPSQP  134 (327)
T ss_dssp             --CCEEEEEECCSSCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHHTSCCSSST
T ss_pred             CccceEEEEEeccccchhhHHHHHHHHHHHhhC--CCCCCCeEEEEEcC-CCCcEEEEecCCCCcHHHHHHhhccccccc
Confidence            456689999998887777778888887777664  67777777665543 45679999999999999988754       


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCC-----CCCCCccCCCcchh
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCP  160 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aP  160 (358)
                      ..++..++..++.+++.++.++|+.+++|+    +|||++.   +..+||+|||++.....     ......||+.|+||
T Consensus       135 ~~~~~~~~~~i~~qi~~al~~LH~~~i~H~dlkp~NIli~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  214 (327)
T 2yfx_A          135 SSLAMLDLLHVARDIACGCQYLEENHFIHRDIAARNCLLTCPGPGRVAKIGDFGMARDIYRASYYRKGGCAMLPVKWMPP  214 (327)
T ss_dssp             TSCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESCSSTTCCEEECCCHHHHHHHC------CCGGGSCGGGCCH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhCCeecCcCCHhHEEEecCCCcceEEECccccccccccccccccCCCcCCCcceeCH
Confidence            346778899999999999999999999999    9999984   45699999999864321     12334678999999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |..||....      .......+....                          
T Consensus       215 E~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~------~~~~~~~~~~~~--------------------------  262 (327)
T 2yfx_A          215 EAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKS------NQEVLEFVTSGG--------------------------  262 (327)
T ss_dssp             HHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHHTTC--------------------------
T ss_pred             hHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcC------HHHHHHHHhcCC--------------------------
Confidence            99999899999999999999999998 999996543      222222221100                          


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                     ....+..++..+.+||.+||+.||.+|||+.++++|.|+..
T Consensus       263 ---------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~  303 (327)
T 2yfx_A          263 ---------------RMDPPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCT  303 (327)
T ss_dssp             ---------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHH
T ss_pred             ---------------CCCCCCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHh
Confidence                           01123344678899999999999999999999999998753

>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7

Probab=99.97  E-value=1.2e-31  Score=241.69  Aligned_cols=220  Identities=14%  Similarity=0.051  Sum_probs=172.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~   99 (358)
                      ++..+|+|.+..........++.++.+....+  .|++++.........+...|+||||+.||+|.+++.. ....++.+
T Consensus        48 ~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~~  125 (298)
T 3pls_A           48 NRIQCAIKSLSRITEMQQVEAFLREGLLMRGL--NHPNVLALIGIMLPPEGLPHVLLPYMCHGDLLQFIRSPQRNPTVKD  125 (298)
T ss_dssp             CEEEEEEEEETTCCSHHHHHHHHHHHHHHHTC--CCTTBCCCCEEECCSSSCCEEEECCCTTCBHHHHHHCTTCCCBHHH
T ss_pred             ceeeeeeeeccccccHHHHHHHHHHHHHHHhC--CCCCeeeEEEEEecCCCCcEEEEecccCCCHHHHHhccccCCCHHH
Confidence            33468999998877777778888887777764  6888888887776666777999999999999999876 44577889


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-------CCCCCccCCCcchhHHHhCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------QFTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------~~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|.....       ......+|+.|+|||++.+..+
T Consensus       126 ~~~i~~qi~~~l~~LH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  205 (298)
T 3pls_A          126 LISFGLQVARGMEYLAEQKFVHRDLAARNCMLDESFTVKVADFGLARDILDREYYSVQQHRHARLPVKWTALESLQTYRF  205 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECCTTSSCTTTTGGGGCSCCSSCTTCGGGGSCHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEeCcCCCcccccCCcccccccCcCCCCCccccChhhhccCCC
Confidence            99999999999999999999999    999999999999999999975432       2334577899999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcc-cCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELATGDVL-FDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~p-f~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++|..| |....      .......+....                                  
T Consensus       206 ~~~~Di~slG~il~~l~~g~~~~~~~~~------~~~~~~~~~~~~----------------------------------  245 (298)
T 3pls_A          206 TTKSDVWSFGVLLWELLTRGAPPYRHID------PFDLTHFLAQGR----------------------------------  245 (298)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCCTTTTSC------GGGHHHHHHTTC----------------------------------
T ss_pred             ChhhchhhHHHHHHHHhhCCCCCCccCC------HHHHHHHhhcCC----------------------------------
Confidence            9999999999999999995554 43222      111111111000                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+..+.+||.+||+.||.+|||+.++++
T Consensus       246 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~  280 (298)
T 3pls_A          246 -------RLPQPEYCPDSLYQVMQQCWEADPAVRPTFRVLVG  280 (298)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------CCCCCccchHHHHHHHHHHccCChhhCcCHHHHHH
Confidence                   11223345678999999999999999999999875

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.97  E-value=6.9e-32  Score=257.66  Aligned_cols=225  Identities=16%  Similarity=0.188  Sum_probs=171.0

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      ...+..||+|.+.....  ....+.++++...++  .|++++.+......  ...|+|||||+||+|.+++...  ..++
T Consensus       205 ~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~--~~~~iv~e~~~~gsL~~~l~~~~~~~~~  278 (452)
T 1fmk_A          205 WNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKL--RHEKLVQLYAVVSE--EPIYIVTEYMSKGSLLDFLKGETGKYLR  278 (452)
T ss_dssp             ETTTEEEEEEECCTTSS--CHHHHHHHHHHHHHC--CCTTBCCEEEEECS--SSCEEEECCCTTCBHHHHHSHHHHTTCC
T ss_pred             ECCCceEEEEEeccCCC--CHHHHHHHHHHHHhC--CCCCEeeEEEEEcC--CceEEEehhhcCCCHHHHHHhcCCCCCC
Confidence            34455799999886542  345677777777664  57778877765443  5689999999999999999743  3478


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ..++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....+|..|+|||++.+..+
T Consensus       279 ~~~~~~i~~qi~~~l~~LH~~~ivHrDlkp~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  358 (452)
T 1fmk_A          279 LPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  358 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeCCCCChhhEEECCCCCEEECCCccceecCCCceecccCCcccccccCHhHHhcCCC
Confidence            88999999999999999999999999    9999999999999999999765432    223356788999999999899


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||.+..      ..+.+..+....                                  
T Consensus       359 ~~~sDvwslG~~l~el~t~g~~P~~~~~------~~~~~~~i~~~~----------------------------------  398 (452)
T 1fmk_A          359 TIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVERGY----------------------------------  398 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHTTC----------------------------------
T ss_pred             CccccHHhHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999999 999997543      223222221100                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc--CcCcCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSAG  296 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~--hpwf~~~  296 (358)
                             ....+..++..+.+||.+||+.||++|||++++++  ..+|...
T Consensus       399 -------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~~  442 (452)
T 1fmk_A          399 -------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST  442 (452)
T ss_dssp             -------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCS
T ss_pred             -------CCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhccC
Confidence                   01223445778999999999999999999999987  4676653

>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A

Probab=99.97  E-value=3.4e-32  Score=244.94  Aligned_cols=224  Identities=14%  Similarity=0.013  Sum_probs=161.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..||+|.......   ..++.++.+......  +.+++.............|+||||+ ||+|.+++.. ...+++.
T Consensus        32 ~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~--~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~  105 (296)
T 4hgt_A           32 AAGEEVAIKLECVKTK---HPQLHIESKIYKMMQ--GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLK  105 (296)
T ss_dssp             TTTEEEEEEEEEC------CCCHHHHHHHHHHHT--TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTSCCCHH
T ss_pred             CCCceEEEEeeccccc---chHHHHHHHHHHHhc--CCCCCCeeeeecCCCCceEEEEEcc-CCCHHHHHHHhcCCCCHH
Confidence            5677889997554332   234555555555432  3333333333333456779999999 9999998873 4468889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCCC----------CCCCccCCCcchhH
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCPE  161 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aPE  161 (358)
                      ++..++.+++.|+.++|+.+++|+    +|||+   +.++.+||+|||+|......          .....||+.|+|||
T Consensus       106 ~~~~i~~qi~~~l~~LH~~~ivH~Dlkp~NIl~~~~~~~~~~kL~Dfg~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  185 (296)
T 4hgt_A          106 TVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASIN  185 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCGGGCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeecCCCCHHHeeeeccCCCCeEEEecCccceeccCcccCccCCCCcccccCCCccccchH
Confidence            999999999999999999999999    99999   78899999999999765432          23458999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..++.++|||||||++|+|++|+.||.+.........   +..+....-..|                        
T Consensus       186 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~---~~~~~~~~~~~~------------------------  238 (296)
T 4hgt_A          186 THLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQK---YERISEKKMSTP------------------------  238 (296)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSH---HHHHHHHHHHSC------------------------
T ss_pred             HhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhh---hhhhhcccccch------------------------
Confidence            99999999999999999999999999999976543322111   111111000000                        


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                   ........++.+.+||.+||+.||++|||++++++
T Consensus       239 -------------~~~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  273 (296)
T 4hgt_A          239 -------------IEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             -------------HHHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             -------------hhhhhccCCHHHHHHHHHHHhcCCCCCCCHHHHHH
Confidence                         00111334678999999999999999999999875

>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*

Probab=99.97  E-value=1.4e-31  Score=237.83  Aligned_cols=219  Identities=14%  Similarity=0.128  Sum_probs=169.2

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCccccccccc--ccC
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      +|..+|+|++.... +....+++.++.+...+  ..|++++.+....... ....|+||||++||+|.+++....  .++
T Consensus        32 ~~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~--l~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  109 (271)
T 3kmu_A           32 QGNDIVVKVLKVRDWSTRKSRDFNEECPRLRI--FSHPNVLPVLGACQSPPAPHPTLITHWMPYGSLYNVLHEGTNFVVD  109 (271)
T ss_dssp             TTEEEEEEEECCTTCCHHHHHHHHHHGGGGCC--CSCTTEECEEEEECTTTSSSCEEEEECCTTCBHHHHHHSCSSCCCC
T ss_pred             CCeeEEEEEecccccCHHHHHHHHHHHHHHHh--cCCCchhheEEEEccCCCCCeEeeecccCCCcHHHHHhhcccCCCC
Confidence            47788999987643 44555666666655555  3677888877765443 467899999999999999998655  478


Q ss_pred             hhhhhHHHHhhhhccccccCCC--CCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCc
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +.++..++.+++.++.|+|+.+  ++|+    +|||++.++.++|+|||++....  .....||+.|+|||++.+..++.
T Consensus       110 ~~~~~~i~~qi~~~l~~lH~~~~~i~H~dikp~Nil~~~~~~~~l~~~~~~~~~~--~~~~~~t~~y~aPE~~~~~~~~~  187 (271)
T 3kmu_A          110 QSQAVKFALDMARGMAFLHTLEPLIPRHALNSRSVMIDEDMTARISMADVKFSFQ--SPGRMYAPAWVAPEALQKKPEDT  187 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCCTTCCCSGGGEEECTTSCEEEEGGGSCCTTS--CTTCBSCGGGSCHHHHHSCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCceecCCCccceEEEcCCcceeEEeccceeeec--ccCccCCccccChhhhccCCCCC
Confidence            8999999999999999999999  9998    99999999999999999875432  24558899999999999876444


Q ss_pred             ---chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          171 ---SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       171 ---~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                         ++|||||||++|+|++|..||.+.+      .......+.. .+.                                
T Consensus       188 ~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~-~~~--------------------------------  228 (271)
T 3kmu_A          188 NRRSADMWSFAVLLWELVTREVPFADLS------NMEIGMKVAL-EGL--------------------------------  228 (271)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCSCTTTTSC------HHHHHHHHHH-SCC--------------------------------
T ss_pred             CCchhhHHHHHHHHHHHHhCCCCccccC------hHHHHHHHHh-cCC--------------------------------
Confidence               7999999999999999999997543      2222211111 000                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...++.+.+||.+||+.||++|||++++++
T Consensus       229 -------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~~il~  263 (271)
T 3kmu_A          229 -------RPTIPPGISPHVSKLMKICMNEDPAKRPKFDMIVP  263 (271)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                   11233445778999999999999999999999985

>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A

Probab=99.97  E-value=6.6e-32  Score=243.20  Aligned_cols=223  Identities=13%  Similarity=0.014  Sum_probs=163.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~   98 (358)
                      .+|..+|+|++.....   ...+.++.+....+.  +.+++.............|+||||+ ||+|.+++. ....+++.
T Consensus        32 ~~~~~vavK~~~~~~~---~~~~~~e~~~l~~l~--~~~~i~~~~~~~~~~~~~~lv~e~~-~~~L~~~~~~~~~~~~~~  105 (296)
T 3uzp_A           32 AAGEEVAIKLECVKTK---HPQLHIESKIYKMMQ--GGVGIPTIRWCGAEGDYNVMVMELL-GPSLEDLFNFCSRKFSLK  105 (296)
T ss_dssp             TTTEEEEEEEEESCSS---CCHHHHHHHHHHHHT--TSTTCCCEEEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEEEecCCcc---hhHHHHHHHHHHHhh--cCCCCCccccccCCCCceEEEEEec-CCCHHHHHHhhccCCCHH
Confidence            5677899998765433   234556665555543  2222222222223456679999999 999999887 34568889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCCC----------CCCCccCCCcchhH
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCPE  161 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aPE  161 (358)
                      ++..++.+++.++.++|+.+++|+    +|||+   +.++.+||+|||+|......          .....||+.|+|||
T Consensus       106 ~~~~i~~qi~~~l~~lH~~~ivH~dlkp~NIl~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE  185 (296)
T 3uzp_A          106 TVLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASIN  185 (296)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCSCCCCSCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCeeeCCCCHHHeEEecCCCCCeEEEeeCCCcccccccccccccccccccccccccccCChh
Confidence            999999999999999999999999    99999   47899999999999765432          23458999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH-HhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME-LLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++|+.||.+.......   ..+..+.. ....+.                       
T Consensus       186 ~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~---~~~~~~~~~~~~~~~-----------------------  239 (296)
T 3uzp_A          186 THLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKR---QKYERISEKKMSTPI-----------------------  239 (296)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSS---SHHHHHHHHHHHSCH-----------------------
T ss_pred             hhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhh---hhhhhhcccccCCch-----------------------
Confidence            999999999999999999999999999999765432211   11111111 000000                       


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                     .......++.+.+||.+||+.||++|||+.++++
T Consensus       240 ---------------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  273 (296)
T 3uzp_A          240 ---------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQ  273 (296)
T ss_dssp             ---------------HHHTTTSCHHHHHHHHHHHTSCTTCCCCHHHHHH
T ss_pred             ---------------HHHHhhCCHHHHHHHHHHHhcCcCcCCCHHHHHH
Confidence                           0112334678999999999999999999999875

>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*

Probab=99.97  E-value=4.6e-32  Score=244.48  Aligned_cols=224  Identities=13%  Similarity=0.070  Sum_probs=164.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~   98 (358)
                      .+|..||+|.+....   ....++++.+....+. .+.+++.+.... ......|+||||+ ||+|.+++.... .+++.
T Consensus        33 ~~~~~vavK~~~~~~---~~~~~~~e~~~~~~l~-~~~~i~~~~~~~-~~~~~~~lv~e~~-~~~L~~~l~~~~~~~~~~  106 (298)
T 1csn_A           33 LNNQQVAIKFEPRRS---DAPQLRDEYRTYKLLA-GCTGIPNVYYFG-QEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVK  106 (298)
T ss_dssp             TTTEEEEEEEEECCT---TSCCHHHHHHHHHHTT-TCTTCCCEEEEE-EETTEEEEEEECC-CCBHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEEEeccCC---ccHHHHHHHHHHHHHh-cCCCCCeEEeec-CCCceeEEEEEec-CCCHHHHHHHhccCCCHH
Confidence            567889999876543   2334555555554432 344444443332 2345679999999 999999987543 48889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCc-----EEEEecCCceecCCC----------CCCCccCCCcch
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ-----CKLVDFGNACWTHKQ----------FTNDIQTRQYRC  159 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~-----vkL~DFG~a~~~~~~----------~~~~~gt~~Y~a  159 (358)
                      ++..++.+++.|+.++|+.+++|+    +|||++.++.     +||+|||+|......          .....||+.|+|
T Consensus       107 ~~~~i~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~gt~~y~a  186 (298)
T 1csn_A          107 TVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS  186 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHhCCEecCCCCHHHEEeccCCCCCCCeEEEEECccccccccccccccccccCccCCCCCcccCC
Confidence            999999999999999999999999    9999987776     999999999765432          234579999999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      ||++.+..++.++|||||||++|+|++|+.||.+.....   ....+..+.......+.                     
T Consensus       187 PE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~---~~~~~~~~~~~~~~~~~---------------------  242 (298)
T 1csn_A          187 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT---NKQKYERIGEKKQSTPL---------------------  242 (298)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC---HHHHHHHHHHHHHHSCH---------------------
T ss_pred             chhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccc---cHHHHHHHHhhccCccH---------------------
Confidence            999999999999999999999999999999997654221   22222222221111110                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                      ......+++.+.+||.+||+.||++|||++++++
T Consensus       243 ----------------~~~~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~  276 (298)
T 1csn_A          243 ----------------RELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  276 (298)
T ss_dssp             ----------------HHHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ----------------HHHHhhCcHHHHHHHHHHhcCCcccCCCHHHHHH
Confidence                            0112234678999999999999999999999865

>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*

Probab=99.97  E-value=2.5e-32  Score=248.98  Aligned_cols=233  Identities=15%  Similarity=0.122  Sum_probs=175.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..||+|.+...........+.++.+....+  .+++++.+....... ...+|+||||++||+|.+++.... +++.
T Consensus        58 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~-~~~~  134 (318)
T 3lxp_A           58 GTGEMVAVKALKADAGPQHRSGWKQEIDILRTL--YHEHIIKYKGCCEDAGAASLQLVMEYVPLGSLRDYLPRHS-IGLA  134 (318)
T ss_dssp             -CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEEETTTTEEEEEECCCTTCBHHHHGGGSC-CCHH
T ss_pred             CCCcEEEEEEeccccChHHHHHHHHHHHHHHhC--CCcchhhEEEEEecCCCceEEEEEecccCCcHHHHHhhCC-CCHH
Confidence            367789999999888778888888888887774  477777766654433 456789999999999999987654 7888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....||+.|+|||++.+..+
T Consensus       135 ~~~~i~~~l~~~l~~LH~~~ivH~Dikp~Nil~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  214 (318)
T 3lxp_A          135 QLLLFAQQICEGMAYLHAQHYIHRDLAARNVLLDNDRLVKIGDFGLAKAVPEGHEYYRVREDGDSPVFWYAPECLKEYKF  214 (318)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCGGGCEECCTTCSEEEC---CCCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCccCCCCchheEEEcCCCCEEECCccccccccccccccccccCCCCCceeeChHHhcCCCC
Confidence            999999999999999999999998    9999999999999999999776432      234468889999999999889


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|+|++|..||....        .   ......+.......        .       ..        .
T Consensus       215 ~~~~Di~slG~il~~ll~g~~p~~~~~--------~---~~~~~~~~~~~~~~--------~-------~~--------~  260 (318)
T 3lxp_A          215 YYASDVWSFGVTLYELLTHCDSSQSPP--------T---KFLELIGIAQGQMT--------V-------LR--------L  260 (318)
T ss_dssp             EHHHHHHHHHHHHHHHHTTTCGGGSHH--------H---HHHHHHCSCCHHHH--------H-------HH--------H
T ss_pred             CcHHHHHHHHHHHHHHHhCCCcccccc--------h---hhhhhhcccccchh--------H-------HH--------H
Confidence            999999999999999999999995321        0   00001110000000        0       00        0


Q ss_pred             hhhH--HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVL--VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      ....  ......+..++..+.+||.+||+.||.+|||+.|+++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~  303 (318)
T 3lxp_A          261 TELLERGERLPRPDKCPAEVYHLMKNCWETEASFRPTFENLIP  303 (318)
T ss_dssp             HHHHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             HHHHhcccCCCCCccccHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence            0000  0012334556789999999999999999999999975

>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*

Probab=99.97  E-value=1.2e-32  Score=248.95  Aligned_cols=236  Identities=16%  Similarity=0.143  Sum_probs=172.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC-CCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS-SPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      .+|..+|+|.+..........++.++.+....+  .|++++......... ....|+||||++||+|.+++.. ...+++
T Consensus        48 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  125 (302)
T 4e5w_A           48 NTGEQVAVKSLKPESGGNHIADLKKEIEILRNL--YHENIVKYKGICTEDGGNGIKLIMEFLPSGSLKEYLPKNKNKINL  125 (302)
T ss_dssp             SCSEEEEEEEEC-----CCHHHHHHHHHHHHTC--CCTTBCCEEEEEEC---CCEEEEEECCTTCBHHHHHHHHTTTCCH
T ss_pred             ccCeEEEEEEecccccchhHHHHHHHHHHHHhC--CCCCeeeeeeEEecCCCceEEEEEEeCCCCcHHHHHHhccccCCH
Confidence            467789999998877777778888888777764  577777776654433 3567899999999999999853 456888


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......      .....||..|+|||++.+..
T Consensus       126 ~~~~~~~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  205 (302)
T 4e5w_A          126 KQQLKYAVQICKGMDYLGSRQYVHRDLAARNVLVESEHQVKIGDFGLTKAIETDKEYYTVKDDRDSPVFWYAPECLMQSK  205 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCCEEECCCCTTCCGGGCCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHhhcCCcccCCCchheEEEcCCCCEEECcccccccccCCCcceeccCCCCCCccccCCeeecCCC
Confidence            9999999999999999999999998    9999999999999999999775432      33457888999999999988


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..|+...           ...+....+........               ....      
T Consensus       206 ~~~~~Di~slG~il~~l~~g~~p~~~~-----------~~~~~~~~~~~~~~~~~---------------~~~~------  253 (302)
T 4e5w_A          206 FYIASDVWSFGVTLHELLTYCDSDSSP-----------MALFLKMIGPTHGQMTV---------------TRLV------  253 (302)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTCGGGSH-----------HHHHHHHHCSCCGGGHH---------------HHHH------
T ss_pred             CCcchhHHHHHHHHHHHHHccCCCcch-----------hhHHhhccCCcccccCH---------------HHHH------
Confidence            999999999999999999999887421           11122222221110000               0000      


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                      ...........+..+++.+.+||.+||+.||.+|||+.++++
T Consensus       254 ~~~~~~~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~  295 (302)
T 4e5w_A          254 NTLKEGKRLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIE  295 (302)
T ss_dssp             HHHHTTCCCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHH
T ss_pred             HHHhccCCCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHH
Confidence            000000012344566789999999999999999999999975

>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*

Probab=99.97  E-value=3.9e-32  Score=269.11  Aligned_cols=218  Identities=16%  Similarity=0.152  Sum_probs=172.3

Q ss_pred             cCcccccccccCccch-hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLTK-NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+..||+|.+...... ..+..+.++++...++  .|++++.+.....  ....++|||||+||+|.+++.....+.+.+
T Consensus       395 ~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l--~hpnIv~l~~~~~--~~~~~lv~E~~~~g~L~~~l~~~~~l~~~~  470 (635)
T 4fl3_A          395 VVKTVAVKILKNEANDPALKDELLAEANVMQQL--DNPYIVRMIGICE--AESWMLVMEMAELGPLNKYLQQNRHVKDKN  470 (635)
T ss_dssp             CEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHC--CCTTBCCEEEEEE--SSSEEEEEECCTTEEHHHHHHHCTTCCHHH
T ss_pred             cceEEEEEEeccccCCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEe--cCCEEEEEEccCCCCHHHHHhhCCCCCHHH
Confidence            4567899998875443 3467788888777774  5788888877654  345789999999999999998877889999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....      .....||+.|+|||++.+..|+
T Consensus       471 ~~~i~~qi~~~L~yLH~~~iiHrDLkp~NILl~~~~~~kL~DFGla~~~~~~~~~~~~~~~~~~t~~y~APE~~~~~~~~  550 (635)
T 4fl3_A          471 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFS  550 (635)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCTTHHHHTTC-------------CGGGSCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHCCEeCCCCChHhEEEeCCCCEEEEEcCCccccccCccccccccCCCCceeeeChhhhcCCCCC
Confidence            99999999999999999999999    9999999999999999999765322      2233567889999999999999


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |+.||.+..      ..+....+....                                   
T Consensus       551 ~~sDvwSlGv~l~ellt~G~~Pf~~~~------~~~~~~~i~~~~-----------------------------------  589 (635)
T 4fl3_A          551 SKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEKGE-----------------------------------  589 (635)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHTTC-----------------------------------
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC-----------------------------------
Confidence            99999999999999998 999997654      222222221100                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+..++.++.+||.+||+.||++|||++++++
T Consensus       590 ------~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~  624 (635)
T 4fl3_A          590 ------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  624 (635)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ------CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                  11234455788999999999999999999999875

>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*

Probab=99.97  E-value=4.8e-32  Score=243.81  Aligned_cols=219  Identities=16%  Similarity=0.168  Sum_probs=169.5

Q ss_pred             ccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      ..+..+|+|.+..... ....+++.++.+...++  .+++++......  .....|+||||+.||+|.+++.....+++.
T Consensus        42 ~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~--~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  117 (291)
T 1xbb_A           42 KVVKTVAVKILKNEANDPALKDELLAEANVMQQL--DNPYIVRMIGIC--EAESWMLVMEMAELGPLNKYLQQNRHVKDK  117 (291)
T ss_dssp             SSEEEEEEEEEC-----CHHHHHHHHHHHHHHTC--CCTTBCCEEEEE--ESSSEEEEEECCTTEEHHHHHHHCTTCCHH
T ss_pred             CceeeEEEEeecccccCHHHHHHHHHHHHHHHhC--CCCCEEEEEEEE--CCCCcEEEEEeCCCCCHHHHHHhCcCCCHH
Confidence            3456789999876543 33466777777777664  577777776655  346689999999999999999887778899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....+|+.|+|||++.+..+
T Consensus       118 ~~~~i~~qi~~~l~~LH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  197 (291)
T 1xbb_A          118 NIIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKF  197 (291)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCeEcCCCCcceEEEeCCCcEEEccCCcceeeccCCCcccccccCCCCceeeChHHhccCCC
Confidence            999999999999999999999998    9999999999999999999765432      223356788999999998889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||.+..      .......+..  +.                                
T Consensus       198 ~~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~--~~--------------------------------  237 (291)
T 1xbb_A          198 SSKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--GE--------------------------------  237 (291)
T ss_dssp             EHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--TC--------------------------------
T ss_pred             ChhhhHHHHHHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CC--------------------------------
Confidence            999999999999999999 999997543      2222211110  00                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+..+.+||.+||+.||.+|||+.++++
T Consensus       238 -------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  272 (291)
T 1xbb_A          238 -------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVEL  272 (291)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             -------CCCCCCCCCHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence                   01223445778999999999999999999999975

>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*

Probab=99.97  E-value=6.2e-32  Score=247.69  Aligned_cols=219  Identities=14%  Similarity=0.103  Sum_probs=171.4

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc----------
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS----------   92 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~----------   92 (358)
                      ..||+|.+..........++.++.+...++. .|++++.+...... ....|+||||++||+|.+++...          
T Consensus        77 ~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~-~h~~iv~~~~~~~~-~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~  154 (333)
T 2i1m_A           77 LKVAVKMLKSTAHADEKEALMSELKIMSHLG-QHENIVNLLGACTH-GGPVLVITEYCCYGDLLNFLRRKSRVLETDPAF  154 (333)
T ss_dssp             CEEEEEEECTTCCHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHHHHHHHSCC---
T ss_pred             hHHHHHhcccccChHHHHHHHHHHHHHHhhc-CCCCeeeEEEEEec-CCceEEEEecCCCCcHHHHHHHhcccccccccc
Confidence            3689999988877777888888888777652 57777777665543 45789999999999999988642          


Q ss_pred             ----cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcch
Q 045353           93 ----VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRC  159 (358)
Q Consensus        93 ----~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~a  159 (358)
                          ..+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......     .....||+.|+|
T Consensus       155 ~~~~~~~~~~~~~~~~~qi~~~l~~lH~~~ivH~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~a  234 (333)
T 2i1m_A          155 AIANSTASTRDLLHFSSQVAQGMAFLASKNCIHRDVAARNVLLTNGHVAKIGDFGLARDIMNDSNYIVKGNARLPVKWMA  234 (333)
T ss_dssp             ----CCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGCEEEGGGEEEBCCCGGGCCGGGCTTSEECSSCEECGGGSC
T ss_pred             cccccccCHHHHHHHHHHHHHHHHHHhcCCcccCCcccceEEECCCCeEEECccccccccccccceeecCCCCCCccccC
Confidence                245788899999999999999999999998    9999999999999999999754322     233467889999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      ||++.+..++.++|||||||++|+|++ |..||.+...     . ..+..+.....                        
T Consensus       235 PE~~~~~~~~~~~Di~slG~il~el~t~g~~p~~~~~~-----~-~~~~~~~~~~~------------------------  284 (333)
T 2i1m_A          235 PESIFDCVYTVQSDVWSYGILLWEIFSLGLNPYPGILV-----N-SKFYKLVKDGY------------------------  284 (333)
T ss_dssp             HHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCS-----S-HHHHHHHHHTC------------------------
T ss_pred             HHHhccCCCChHHHHHHHHHHHHHHHcCCCCCCcccch-----h-HHHHHHHhcCC------------------------
Confidence            999999899999999999999999998 9999975431     1 11111111000                        


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                      ....+...+..+.+||.+||+.||.+|||+.|+++
T Consensus       285 ----------------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  319 (333)
T 2i1m_A          285 ----------------QMAQPAFAPKNIYSIMQACWALEPTHRPTFQQICS  319 (333)
T ss_dssp             ----------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----------------CCCCCCCCCHHHHHHHHHHhccChhhCcCHHHHHH
Confidence                            01122334678899999999999999999999986

>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}

Probab=99.97  E-value=2.3e-32  Score=257.97  Aligned_cols=223  Identities=11%  Similarity=0.028  Sum_probs=159.1

Q ss_pred             cccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCC-c-------------cccc---------cCCCC-CCCCC
Q 045353           19 TESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTE-A-------------FDES---------EADSK-PSSPD   72 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~-------------~~~~---------~~~~~-~~~~~   72 (358)
                      ..+|..||+|++.......  ..++++++......+..... .             ++..         ..... .....
T Consensus       100 ~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (413)
T 3dzo_A          100 QETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLS  179 (413)
T ss_dssp             TTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEEEECCC---------------CCS
T ss_pred             cCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhhcccCCCCccccccCCCccccccc
Confidence            4568899999988443333  35667777766654421110 0             0000         00000 01123


Q ss_pred             CCcccccCCCCCcccccc-------cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCc
Q 045353           73 NFSVDTIPNGVSVEERQN-------DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNA  141 (358)
Q Consensus        73 ~~iv~e~~~gg~L~~~~~-------~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a  141 (358)
                      .+++|++ .+|+|.+++.       ....+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|
T Consensus       180 ~~~~~~~-~~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~~iiHrDiKp~NILl~~~~~~kL~DFG~a  258 (413)
T 3dzo_A          180 RFFLYPR-MQSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLTGFEHL  258 (413)
T ss_dssp             EEEEEEC-CSEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCGGGC
T ss_pred             eEEEeeh-hcCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhCCcccCCcccceEEEecCCeEEEEeccce
Confidence            4555554 5688988874       13345667888888999999999999999999    9999999999999999999


Q ss_pred             eecCCCCCCCccCCCcchhHHH----------hCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH
Q 045353          142 CWTHKQFTNDIQTRQYRCPEVL----------LGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME  211 (358)
Q Consensus       142 ~~~~~~~~~~~gt~~Y~aPE~l----------~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~  211 (358)
                      +.........+| +.|+|||++          .+..|+.++|||||||++|+|++|+.||.+.+....            
T Consensus       259 ~~~~~~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~DvwSlGvil~elltg~~Pf~~~~~~~~------------  325 (413)
T 3dzo_A          259 VRDGASAVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDTWTLGLAIYWIWCADLPNTDDAALGG------------  325 (413)
T ss_dssp             EETTEEECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHHHHHHHHHHHHHHSSCCCCTTGGGSC------------
T ss_pred             eecCCccccCCC-CceeCchhhhccccccccccCcCCCchhhHHHHHHHHHHHHHCCCCCCCcchhhh------------
Confidence            888777777788 999999999          444588999999999999999999999964431100            


Q ss_pred             HhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          212 LLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       212 ~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                                               .           ..    .+.....+++.+.+||.+||+.||++|||+.++|+||
T Consensus       326 -------------------------~-----------~~----~~~~~~~~~~~~~~li~~~l~~dP~~Rpt~~~~l~~~  365 (413)
T 3dzo_A          326 -------------------------S-----------EW----IFRSCKNIPQPVRALLEGFLRYPKEDRLLPLQAMETP  365 (413)
T ss_dssp             -------------------------S-----------GG----GGSSCCCCCHHHHHHHHHHTCSSGGGSCCHHHHTTSH
T ss_pred             -------------------------H-----------HH----HHhhcccCCHHHHHHHHHHccCChhhCcCHHHHHhCH
Confidence                                     0           00    0011123457899999999999999999999999999


Q ss_pred             CcCC
Q 045353          292 WMSA  295 (358)
Q Consensus       292 wf~~  295 (358)
                      ||+.
T Consensus       366 ~~~~  369 (413)
T 3dzo_A          366 EYEQ  369 (413)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9974

>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*

Probab=99.97  E-value=1.6e-32  Score=251.06  Aligned_cols=236  Identities=15%  Similarity=0.111  Sum_probs=172.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc-ccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND-SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~   97 (358)
                      .+|..||+|.+... .....++++++.+...++  .+++++....... ......|+||||++||+|.+++.. ...+++
T Consensus        50 ~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~  126 (327)
T 3lxl_A           50 NTGALVAVKQLQHS-GPDQQRDFQREIQILKAL--HSDFIVKYRGVSYGPGRQSLRLVMEYLPSGCLRDFLQRHRARLDA  126 (327)
T ss_dssp             SCSEEEEEEEESSC-CHHHHHHHHHHHHHHHTC--CCTTBCCEEEEEECSSSCEEEEEEECCTTCBHHHHHHHHGGGCCH
T ss_pred             CcceEEEEEEeccC-CHHHHHHHHHHHHHHHhc--CCCceeEEEEEEecCCCceEEEEEeecCCCCHHHHHHhcccCCCH
Confidence            46778999998765 344556677887777664  6677777655432 234568899999999999999875 345889


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....||+.|+|||++.+..
T Consensus       127 ~~~~~i~~qi~~al~~lH~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~  206 (327)
T 3lxl_A          127 SRLLLYSSQICKGMEYLGSRRCVHRDLAARNILVESEAHVKIADFGLAKLLPLDKDYYVVREPGQSPIFWYAPESLSDNI  206 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCGGGCEECCTTCSEEECSSCCCSCGGGSCHHHHHHCE
T ss_pred             HHHHHHHHHHHHHHHHHHhCCccCCCCChhhEEECCCCCEEEcccccceecccCCccceeeccCCccccccCHHHhccCC
Confidence            9999999999999999999999998    9999999999999999999765432      23446888999999999988


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      ++.++|||||||++|+|++|..||....       .... .........+..                  .....     
T Consensus       207 ~~~~~Di~slG~il~~ll~g~~p~~~~~-------~~~~-~~~~~~~~~~~~------------------~~~~~-----  255 (327)
T 3lxl_A          207 FSRQSDVWSFGVVLYELFTYCDKSCSPS-------AEFL-RMMGCERDVPAL------------------SRLLE-----  255 (327)
T ss_dssp             EEHHHHHHHHHHHHHHHHTTTCGGGSHH-------HHHH-HHCC----CCHH------------------HHHHH-----
T ss_pred             CChHHhHHHHHHHHHHHHhCCCCCcccc-------chhh-hhcccccccccH------------------HHHHH-----
Confidence            9999999999999999999999985321       0000 000000000000                  00000     


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                       ..........+..+++.+.+||.+||+.||.+|||+.|++++
T Consensus       256 -~~~~~~~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~  297 (327)
T 3lxl_A          256 -LLEEGQRLPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQ  297 (327)
T ss_dssp             -HHHTTCCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -HhhcccCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence             000000123345567899999999999999999999999653

>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}

Probab=99.97  E-value=9e-32  Score=246.24  Aligned_cols=214  Identities=14%  Similarity=0.098  Sum_probs=164.0

Q ss_pred             cccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhHH
Q 045353           25 KENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDNE  103 (358)
Q Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~~  103 (358)
                      +++|.+....+....+++.++.+...++  .|++++.+......  ...++||||+.+|+|.+++.. ...+++..+..+
T Consensus        47 v~iK~~~~~~~~~~~~~~~~E~~~l~~l--~hp~iv~~~~~~~~--~~~~~v~~~~~~g~L~~~l~~~~~~~~~~~~~~i  122 (327)
T 3lzb_A           47 VAIKELREATSPKANKEILDEAYVMASV--DNPHVCRLLGICLT--STVQLITQLMPFGCLLDYVREHKDNIGSQYLLNW  122 (327)
T ss_dssp             EEEEEECCCSSCCCHHHHHHHHHHHTTC--CBTTBCCCCEEEES--SSEEEEECCCSSCBHHHHHHHTTTCCCHHHHHHH
T ss_pred             EEEEeeccccCHHHHHHHHHHHHHHHhC--CCCCeeEEEEEEec--CCceEEEEecCCCcHHHHHHhcCCCCCHHHHHHH
Confidence            4677776666777778888888877764  57778777765543  347899999999999998875 456788899999


Q ss_pred             HHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchhh
Q 045353          104 VKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSADL  174 (358)
Q Consensus       104 l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~Di  174 (358)
                      +.+++.++.|+|+.+++|+    +|||++.++.+||+|||+|+.....     .....||+.|+|||++.+..|+.++||
T Consensus       123 ~~qi~~aL~~LH~~~ivH~Dikp~NIl~~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di  202 (327)
T 3lzb_A          123 CVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDV  202 (327)
T ss_dssp             HHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCTTC----------------CCCGGGSCHHHHHHCCCCHHHHH
T ss_pred             HHHHHHHHHHHhhCCCcCCCCCHHHEEEcCCCCEEEccCcceeEccCccccccccCCCccccccCHHHHcCCCCChHHHH
Confidence            9999999999999999999    9999999999999999999765322     223456889999999999999999999


Q ss_pred             hhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          175 WSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       175 wSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      |||||++|+|++ |..||.+...      ......+.. ..                                       
T Consensus       203 ~slG~il~ell~~g~~p~~~~~~------~~~~~~~~~-~~---------------------------------------  236 (327)
T 3lzb_A          203 WSYGVTVWELMTFGSKPYDGIPA------SEISSILEK-GE---------------------------------------  236 (327)
T ss_dssp             HHHHHHHHHHHTTSCCTTTTCCG------GGHHHHHHT-TC---------------------------------------
T ss_pred             HHHHHHHHHHHHCCCCCCCCCCH------HHHHHHHHc-CC---------------------------------------
Confidence            999999999999 9999975441      111111110 00                                       


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       ....+...+..+.+||.+||..||.+|||+.|+++
T Consensus       237 -~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~  271 (327)
T 3lzb_A          237 -RLPQPPICTIDVYMIMRKCWMIDADSRPKFRELII  271 (327)
T ss_dssp             -CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence             11223445678999999999999999999999986

>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*

Probab=99.97  E-value=2.2e-31  Score=241.88  Aligned_cols=221  Identities=13%  Similarity=0.092  Sum_probs=161.8

Q ss_pred             cCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC----CCCCcccccCCCCCcccccc-----
Q 045353           21 SSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS----PDNFSVDTIPNGVSVEERQN-----   90 (358)
Q Consensus        21 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~iv~e~~~gg~L~~~~~-----   90 (358)
                      ++..+|+|.+.... +.....++.++.+...++  .|++++..........    ...|+||||++||+|.+++.     
T Consensus        61 ~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~~~v~e~~~~~~L~~~l~~~~~~  138 (313)
T 3brb_A           61 TSLKVAVKTMKLDNSSQREIEEFLSEAACMKDF--SHPNVIRLLGVCIEMSSQGIPKPMVILPFMKYGDLHTYLLYSRLE  138 (313)
T ss_dssp             CEEEEEEEEC---CCCHHHHHHHHHHHHHHHTC--CCTTBCCCCEEEEC-------CEEEEEECCTTCBHHHHHHHTTBT
T ss_pred             ceeEEEEEEEeccccchhHHHHHHHHHHHHhcC--CCCCeeeeeEEEeeccccCCcccEEEEecccCCCHHHHHHHhhhh
Confidence            44578999987553 444556677777766664  5777777766543322    35699999999999999873     


Q ss_pred             -cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchh
Q 045353           91 -DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCP  160 (358)
Q Consensus        91 -~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aP  160 (358)
                       ....+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....+++.|+||
T Consensus       139 ~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~y~aP  218 (313)
T 3brb_A          139 TGPKHIPLQTLLKFMVDIALGMEYLSNRNFLHRDLAARNCMLRDDMTVCVADFGLSKKIYSGDYYRQGRIAKMPVKWIAI  218 (313)
T ss_dssp             TSCCCCCHHHHHHHHHHHHHHHHHHHTTTCCCCCCSGGGEEECTTSCEEECSCSCC----------------CCGGGSCH
T ss_pred             cCCccCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCcceEEEcCCCcEEEeecCcceecccccccCcccccCCCccccCc
Confidence             34567889999999999999999999999999    9999999999999999999765322     2234678899999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                      |++.+..++.++|||||||++|+|++ |..||.+...      ......+..  +.                        
T Consensus       219 E~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~------~~~~~~~~~--~~------------------------  266 (313)
T 3brb_A          219 ESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQN------HEMYDYLLH--GH------------------------  266 (313)
T ss_dssp             HHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHT--TC------------------------
T ss_pred             hhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCH------HHHHHHHHc--CC------------------------
Confidence            99999999999999999999999999 8899965431      111111110  00                        


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                     ....+...+..+.+||.+||..||.+|||+.+++++
T Consensus       267 ---------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~  302 (313)
T 3brb_A          267 ---------------RLKQPEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQ  302 (313)
T ss_dssp             ---------------CCCCBTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ---------------CCCCCccccHHHHHHHHHHcCCChhhCcCHHHHHHH
Confidence                           112234456789999999999999999999999864

>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...

Probab=99.97  E-value=2.2e-31  Score=237.83  Aligned_cols=218  Identities=15%  Similarity=0.150  Sum_probs=169.1

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc--ccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV--VNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~--~~~   96 (358)
                      ...+..+|+|.+.....  ....+.++.+...++  .|++++.......  +...|+||||+.||+|.+++....  .++
T Consensus        34 ~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l--~h~~i~~~~~~~~--~~~~~~v~e~~~~~~L~~~l~~~~~~~~~  107 (279)
T 1qpc_A           34 YNGHTKVAVKSLKQGSM--SPDAFLAEANLMKQL--QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPSGIKLT  107 (279)
T ss_dssp             ETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHC--CCTTBCCEEEEEC--SSSCEEEEECCTTCBHHHHTTSHHHHTCC
T ss_pred             EcCCcEEEEEEecCCcc--cHHHHHHHHHHHHhC--CCcCcceEEEEEc--CCCcEEEEecCCCCCHHHHHhcCCCCCCC
Confidence            44566789998876432  345677777766664  5677777765543  456899999999999999997643  578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+..+
T Consensus       108 ~~~~~~i~~qi~~~l~~lH~~~i~H~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  187 (279)
T 1qpc_A          108 INKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTF  187 (279)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCeeccCCCHhhEEEcCCCCEEECCCcccccccCcccccccCCCCccCccChhhhccCCC
Confidence            88999999999999999999999998    9999999999999999999775432    233457889999999998889


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||.+..      ..+....+....                                  
T Consensus       188 ~~~~Di~slG~il~el~~~g~~p~~~~~------~~~~~~~~~~~~----------------------------------  227 (279)
T 1qpc_A          188 TIKSDVWSFGILLTEIVTHGRIPYPGMT------NPEVIQNLERGY----------------------------------  227 (279)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHTTC----------------------------------
T ss_pred             CchhhhHHHHHHHHHHHhCCCCCCcccC------HHHHHHHHhccc----------------------------------
Confidence            999999999999999999 999997543      222222221100                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                             ....+...+..+.+||.+||..||++|||++++++
T Consensus       228 -------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  262 (279)
T 1qpc_A          228 -------RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRS  262 (279)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -------CCCCcccccHHHHHHHHHHhccChhhCCCHHHHHH
Confidence                   01122344678999999999999999999999976

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.97  E-value=1.6e-31  Score=260.18  Aligned_cols=224  Identities=17%  Similarity=0.189  Sum_probs=174.5

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~   96 (358)
                      ...+..||+|.+.....  ....+.++++...++  .|++++.+......  ...|||||||.||+|.+++...  ..+.
T Consensus       288 ~~~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l--~hpniv~~~~~~~~--~~~~lv~e~~~~gsL~~~l~~~~~~~l~  361 (535)
T 2h8h_A          288 WNGTTRVAIKTLKPGTM--SPEAFLQEAQVMKKL--RHEKLVQLYAVVSE--EPIYIVTEYMSKGSLLDFLKGETGKYLR  361 (535)
T ss_dssp             ETTTEEEEEEEECTTSS--CHHHHHHHHHHHHHC--CCTTBCCEEEEECS--SSCEEEECCCTTEEHHHHHSHHHHTTCC
T ss_pred             ECCCceEEEEEeCCCCC--CHHHHHHHHHHHHhC--CCCCEeeEEEEEee--ccceEeeehhcCCcHHHHHhhcCCCCCC
Confidence            33445689999886542  345677777777764  57778877765443  6789999999999999999743  3478


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +.++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+++.....    .....+|..|+|||++.+..|
T Consensus       362 ~~~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~  441 (535)
T 2h8h_A          362 LPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRF  441 (535)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCTTSTTTCCCHHHHTTCSTTSCGGGSCHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeeCCCCCHhhEEEcCCCcEEEcccccceecCCCceecccCCcCcccccCHHHhccCCC
Confidence            88999999999999999999999999    9999999999999999999765422    233456789999999999899


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|+|++ |..||.+..      ..+.+..+....                                  
T Consensus       442 ~~~sDvwSlGv~l~el~t~g~~P~~~~~------~~~~~~~i~~~~----------------------------------  481 (535)
T 2h8h_A          442 TIKSDVWSFGILLTELTTKGRVPYPGMV------NREVLDQVERGY----------------------------------  481 (535)
T ss_dssp             CHHHHHHHHHHHHHHHTTTTCCSSTTCC------HHHHHHHHHTTC----------------------------------
T ss_pred             CchhhHHHHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC----------------------------------
Confidence            999999999999999999 999997543      223332221100                                  


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC--cCcCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH--PWMSA  295 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h--pwf~~  295 (358)
                             ....+..++..+.+||.+||+.||++|||++++++.  .+|..
T Consensus       482 -------~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~~  524 (535)
T 2h8h_A          482 -------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS  524 (535)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSCC
T ss_pred             -------CCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhhc
Confidence                   012234456789999999999999999999999873  56654

>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*

Probab=99.97  E-value=3.6e-32  Score=248.77  Aligned_cols=218  Identities=13%  Similarity=0.104  Sum_probs=164.8

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV----------   93 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~----------   93 (358)
                      .+++|.+..........++.++.+...++. .+++++....... .....|+||||++||+|.+++....          
T Consensus        54 ~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~-~hp~iv~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~  131 (327)
T 1fvr_A           54 DAAIKRMKEYASKDDHRDFAGELEVLCKLG-HHPNIINLLGACE-HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI  131 (327)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHTTCC-CCTTBCCEEEEEE-ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHH
T ss_pred             ceeeeeeccccchHHHHHHHHHHHHHHhcc-CCCchhhhceeee-eCCceEEEEecCCCCCHHHHHHhcccccccccccc
Confidence            348898887777777777888877776642 6677777666543 3456899999999999999887543          


Q ss_pred             ------ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCCcchhH
Q 045353           94 ------VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ------~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE  161 (358)
                            .+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......  .....+|+.|+|||
T Consensus       132 ~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~~ivH~dlkp~NIl~~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~y~aPE  211 (327)
T 1fvr_A          132 ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE  211 (327)
T ss_dssp             HTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHH
T ss_pred             cccccccCCHHHHHHHHHHHHHHHHHHHhCCccCCCCccceEEEcCCCeEEEcccCcCccccccccccCCCCCccccChh
Confidence                  57888999999999999999999999999    9999999999999999999754322  23346788999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      ++.+..++.++|||||||++|+|++ |..||.+..      .......+..   .                         
T Consensus       212 ~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~------~~~~~~~~~~---~-------------------------  257 (327)
T 1fvr_A          212 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ---G-------------------------  257 (327)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHGGG---T-------------------------
T ss_pred             hhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc------HHHHHHHhhc---C-------------------------
Confidence            9998889999999999999999998 999996543      1111111100   0                         


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                   .....+...+..+.+||.+||..||.+|||+.|+++|
T Consensus       258 -------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~  294 (327)
T 1fvr_A          258 -------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  294 (327)
T ss_dssp             -------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------CCCCCCCCCCHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                         0012233456789999999999999999999999875

>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*

Probab=99.97  E-value=5.1e-32  Score=243.16  Aligned_cols=215  Identities=14%  Similarity=0.128  Sum_probs=163.2

Q ss_pred             CcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc-cChhhh
Q 045353           22 SASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV-NNESSR  100 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~-~~~~~~  100 (358)
                      +..+|+|.+... ......++.++.+...++  .|++++........ ....|+||||++||+|.+++..... +++..+
T Consensus        40 ~~~va~K~~~~~-~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~  115 (289)
T 4fvq_A           40 ETEVLLKVLDKA-HRNYSESFFEAASMMSKL--SHKHLVLNYGVCVC-GDENILVQEFVKFGSLDTYLKKNKNCINILWK  115 (289)
T ss_dssp             EEEEEEEEECGG-GGGGHHHHHHHHHHHHTS--CCTTBCCEEEEECC-TTCCEEEEECCTTCBHHHHHHHTGGGCCHHHH
T ss_pred             chhhhhhhcccc-cHHHHHHHHHHHHHHHhC--CCCCEeEEEEEEEe-CCCCEEEEECCCCCCHHHHHHhCCCCCCHHHH
Confidence            346888888653 344556677777766664  57778777666543 4567999999999999999876544 888899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCc--------EEEEecCCceecCCCCCCCccCCCcchhHHHhC-CC
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQ--------CKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG-SK  167 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~--------vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~-~~  167 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.        +||+|||++...... ....||+.|+|||++.+ ..
T Consensus       116 ~~i~~qi~~~L~~LH~~~ivH~Dlkp~NIll~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-~~~~~~~~y~aPE~~~~~~~  194 (289)
T 4fvq_A          116 LEVAKQLAAAMHFLEENTLIHGNVCAKNILLIREEDRKTGNPPFIKLSDPGISITVLPK-DILQERIPWVPPECIENPKN  194 (289)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCGGGEEEEECCBGGGTBCCEEEECCCCSCTTTSCH-HHHHHTTTTSCHHHHHCGGG
T ss_pred             HHHHHHHHHHHHHHhhCCeECCCcCcceEEEecCCcccccccceeeeccCcccccccCc-cccCCcCcccCHHHhCCCCC
Confidence            9999999999999999999999    9999998887        999999998654332 23467899999999998 56


Q ss_pred             CCcchhhhhhhHHHHhhhcCC-cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      ++.++|||||||++|+|++|. +||....       ......+...                                  
T Consensus       195 ~~~~~DiwslG~il~el~~g~~~~~~~~~-------~~~~~~~~~~----------------------------------  233 (289)
T 4fvq_A          195 LNLATDKWSFGTTLWEICSGGDKPLSALD-------SQRKLQFYED----------------------------------  233 (289)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTTCCTTTTSC-------HHHHHHHHHT----------------------------------
T ss_pred             CCchhHHHHHHHHHHHHHcCCCCCccccc-------hHHHHHHhhc----------------------------------
Confidence            999999999999999999965 4443221       1111111110                                  


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                              ....+...+..+.+||.+||+.||.+|||+.++++|
T Consensus       234 --------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~  269 (289)
T 4fvq_A          234 --------RHQLPAPKAAELANLINNCMDYEPDHRPSFRAIIRD  269 (289)
T ss_dssp             --------TCCCCCCSSCTTHHHHHHHSCSSGGGSCCHHHHHHH
T ss_pred             --------cCCCCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                    111222335568899999999999999999999986

>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*

Probab=99.97  E-value=1.9e-31  Score=236.61  Aligned_cols=220  Identities=14%  Similarity=0.155  Sum_probs=170.2

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccCh
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNE   97 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~   97 (358)
                      ..++..+|+|.+......  ...+.++.+...++  .+++++........ ....|+||||++||+|.+++... ..+++
T Consensus        29 ~~~~~~vaiK~~~~~~~~--~~~~~~e~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~~~~~~~~  103 (267)
T 3t9t_A           29 WLNKDKVAIKTIREGAMS--EEDFIEEAEVMMKL--SHPKLVQLYGVCLE-QAPICLVTEFMEHGCLSDYLRTQRGLFAA  103 (267)
T ss_dssp             ETTTEEEEEEEECTTTBC--HHHHHHHHHHHHTC--CCTTBCCEEEEECS-SSSCEEEECCCTTCBHHHHHHHTTTCCCH
T ss_pred             ecCCCeEEEEEccccCCC--HHHHHHHHHHHHhC--CCCCEeeEEEEEcc-CCCeEEEEeCCCCCcHHHHHhhCcccCCH
Confidence            446678899998765433  34566776666664  57777776665443 45789999999999999988754 45788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....+|+.|+|||++.+..++
T Consensus       104 ~~~~~~~~~i~~~l~~lH~~~i~H~dl~p~Nili~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  183 (267)
T 3t9t_A          104 ETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYS  183 (267)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSSCCGGGEEECGGGCEEECCTTGGGGBCCHHHHSTTSTTCCGGGCCHHHHHHCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcccCCCchheEEECCCCCEEEcccccccccccccccccccccccccccChhhhcCCCcc
Confidence            8999999999999999999999998    9999999999999999999765322    3345678899999999988899


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||....      .......+....                                   
T Consensus       184 ~~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~i~~~~-----------------------------------  222 (267)
T 3t9t_A          184 SKSDVWSFGVLMWEVFSEGKIPYENRS------NSEVVEDISTGF-----------------------------------  222 (267)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTTC-----------------------------------
T ss_pred             chhchhhhHHHHHHHhccCCCCCCCCC------HHHHHHHHhcCC-----------------------------------
Confidence            99999999999999999 899996543      222222221100                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                            ....+...+..+.+||.+||+.||++|||+.+++++
T Consensus       223 ------~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~  258 (267)
T 3t9t_A          223 ------RLYKPRLASTHVYQIMNHCWRERPEDRPAFSRLLRQ  258 (267)
T ss_dssp             ------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------cCCCCccCcHHHHHHHHHHccCChhhCcCHHHHHHH
Confidence                  001223346788999999999999999999999864

>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0

Probab=99.97  E-value=1.2e-31  Score=238.51  Aligned_cols=221  Identities=18%  Similarity=0.177  Sum_probs=157.9

Q ss_pred             ccCcccccccccCccchh---hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKN---QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|+........   ....++++.+....  ..|++++.+...... ....|+||||++||+|.+++.. ..++
T Consensus        28 ~~~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~~~~-~~~~  103 (271)
T 3dtc_A           28 WIGDEVAVKAARHDPDEDISQTIENVRQEAKLFAM--LKHPNIIALRGVCLK-EPNLCLVMEFARGGPLNRVLSG-KRIP  103 (271)
T ss_dssp             ETTEEEEEEEC----------CHHHHHHHHHHHHH--CCCTTBCCEEEEECC-C--CEEEEECCTTEEHHHHHTS-SCCC
T ss_pred             EcCCeEEEEEEecCCcccHHHHHHHHHHHHHHHHh--cCCCCEeeEEEEEec-CCceEEEEEcCCCCCHHHHhhc-CCCC
Confidence            347789999987655443   23556666666555  357777777665443 4568999999999999998864 4678


Q ss_pred             hhhhhHHHHhhhhccccccCCC---CCCc----ccccccC--------CCcEEEEecCCceecCCC-CCCCccCCCcchh
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPS---RATR----KNLLAAV--------DVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCP  160 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~---~~hr----~NILl~~--------~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aP  160 (358)
                      +..+..++.+++.++.++|+.+   ++|+    +|||++.        ++.+||+|||++...... .....||+.|+||
T Consensus       104 ~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~y~aP  183 (271)
T 3dtc_A          104 PDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLSNKILKITDFGLAREWHRTTKMSAAGAYAWMAP  183 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCSSCCEEECCCCC-------------CCGGGSCH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEecccccccccCcceEEccCCcccccccccccCCCCccceeCH
Confidence            8899999999999999999998   7788    9999986        678999999999765432 3355899999999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      |++.+..++.++|||||||++|+|++|+.||.+..      .......+.  ....                        
T Consensus       184 E~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~------~~~~~~~~~--~~~~------------------------  231 (271)
T 3dtc_A          184 EVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGID------GLAVAYGVA--MNKL------------------------  231 (271)
T ss_dssp             HHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSC------HHHHHHHHH--TSCC------------------------
T ss_pred             HHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHhhh--cCCC------------------------
Confidence            99999899999999999999999999999997543      111111110  0000                        


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                    ....+...++.+.+||.+||+.||.+|||+.|+++|
T Consensus       232 --------------~~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~  267 (271)
T 3dtc_A          232 --------------ALPIPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQ  267 (271)
T ss_dssp             --------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------CCCCCcccCHHHHHHHHHHhcCCcccCcCHHHHHHH
Confidence                          112234456789999999999999999999999875

>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}

Probab=99.97  E-value=5.6e-32  Score=251.29  Aligned_cols=170  Identities=11%  Similarity=0.018  Sum_probs=134.8

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhc-cCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-----cc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC-AGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-----DS   92 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-----~~   92 (358)
                      ..+|..+|+|++....    ...+.++.+....+. ..+++++....... .....|+|||||+||+|.+++.     ..
T Consensus        92 ~~~~~~vavK~~~~~~----~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~-~~~~~~lv~e~~~~g~L~~~l~~~~~~~~  166 (365)
T 3e7e_A           92 AKNKQKFVLKVQKPAN----PWEFYIGTQLMERLKPSMQHMFMKFYSAHL-FQNGSVLVGELYSYGTLLNAINLYKNTPE  166 (365)
T ss_dssp             --CCCCEEEEEESSCC----HHHHHHHHHHHHHSCGGGGGGBCCEEEEEE-CSSCEEEEECCCCSCBHHHHHHHHHTSTT
T ss_pred             cccCcEEEEEEeCCCC----hhHHHHHHHHHHHhhhhhhhhhhhhheeee-cCCCcEEEEeccCCCcHHHHHHHhhcccc
Confidence            4567788999987653    233444444443332 12455665555433 2456799999999999999987     35


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-----------CCcEEEEecCCceecC-----CCCCCCc
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-----------DVQCKLVDFGNACWTH-----KQFTNDI  152 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-----------~~~vkL~DFG~a~~~~-----~~~~~~~  152 (358)
                      ..+++..+..++.|++.|+.|+|+.+++||    +|||++.           ++.+||+|||+|+...     ......+
T Consensus       167 ~~l~~~~~~~i~~qi~~~L~~lH~~~ivHrDiKp~NIll~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~  246 (365)
T 3e7e_A          167 KVMPQGLVISFAMRMLYMIEQVHDCEIIHGDIKPDNFILGNGFLEQDDEDDLSAGLALIDLGQSIDMKLFPKGTIFTAKC  246 (365)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHTTTEECCCCSGGGEEECGGGTCC------CTTEEECCCTTCEEGGGSCTTEEECCSS
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHhhCCeecCCCCHHHEEecccccCccccccccCCEEEeeCchhhhhhccCCCceeeeec
Confidence            568889999999999999999999999999    9999998           8999999999996542     2345678


Q ss_pred             cCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCC
Q 045353          153 QTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP  193 (358)
Q Consensus       153 gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~  193 (358)
                      ||+.|+|||++.+..|+.++|||||||++|+|++|+.||..
T Consensus       247 gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~  287 (365)
T 3e7e_A          247 ETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYMKVK  287 (365)
T ss_dssp             CTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCCCEE
T ss_pred             CCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCcccc
Confidence            99999999999999999999999999999999999999953

>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}

Probab=99.97  E-value=4.5e-32  Score=250.74  Aligned_cols=223  Identities=13%  Similarity=0.044  Sum_probs=161.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCcccc---------------ccCCCCCCCCCCCcccccCCCCCc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDE---------------SEADSKPSSPDNFSVDTIPNGVSV   85 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~iv~e~~~gg~L   85 (358)
                      .|..+|+|.+...      .++.++.+...++  .+++++.               ........+...|+||||+ ||+|
T Consensus        74 ~~~~vavK~~~~~------~~~~~E~~~l~~l--~h~niv~~~~~~~~~~~~~i~~~~~~~~~~~~~~~lv~e~~-~~~L  144 (352)
T 2jii_A           74 QKQKFSLKLDAKD------GRLFNEQNFFQRA--AKPLQVNKWKKLYSTPLLAIPTCMGFGVHQDKYRFLVLPSL-GRSL  144 (352)
T ss_dssp             ---CEEEEEEETT------STHHHHHHHHHHH--CCHHHHHHHHHHTTCTTCSCCCCCEEEEETTTEEEEEEECC-CEEH
T ss_pred             cCceEEEEEeccc------chHHHHHHHHHHh--cccchhhhhhhhccCCccCccchhhccccCCcEEEEEecCC-CcCH
Confidence            4778999988654      3455555555543  3444433               2222222356789999999 9999


Q ss_pred             ccccccc--cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC--cEEEEecCCceecCCC----------
Q 045353           86 EERQNDS--VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV--QCKLVDFGNACWTHKQ----------  147 (358)
Q Consensus        86 ~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~--~vkL~DFG~a~~~~~~----------  147 (358)
                      .+++...  ..+++.++..++.+++.|+.|+|+.+++|+    +|||++.++  .+||+|||+|+.....          
T Consensus       145 ~~~l~~~~~~~l~~~~~~~i~~qi~~~L~~LH~~~ivH~Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~~~~~~  224 (352)
T 2jii_A          145 QSALDVSPKHVLSERSVLQVACRLLDALEFLHENEYVHGNVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVAYVEGS  224 (352)
T ss_dssp             HHHHHHSGGGCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCCCCTTS
T ss_pred             HHHHHhCCcCCCCHHHHHHHHHHHHHHHHHHHhCCccCCCCCHHHEEEcCCCCceEEEecCcceeeccCCCccccccccc
Confidence            9999865  678999999999999999999999999999    999999998  8999999999764321          


Q ss_pred             CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCC
Q 045353          148 FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYS  227 (358)
Q Consensus       148 ~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~  227 (358)
                      .....||+.|+|||++.+..++.++|||||||++|+|++|+.||.+....    ..............++....      
T Consensus       225 ~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~----~~~~~~~~~~~~~~~~~~~~------  294 (352)
T 2jii_A          225 RSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWLYGFLPWTNCLPN----TEDIMKQKQKFVDKPGPFVG------  294 (352)
T ss_dssp             SCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGGGTTC----HHHHHHHHHHHHHSCCCEEC------
T ss_pred             cccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHHhCCCCcccCCcC----HHHHHHHHHhccCChhhhhh------
Confidence            23448999999999999989999999999999999999999999754311    12222222222111110000      


Q ss_pred             hhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          228 RDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                 ........+..+.+||.+||+.||++|||++++++
T Consensus       295 ---------------------------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~  329 (352)
T 2jii_A          295 ---------------------------PCGHWIRPSETLQKYLKVVMALTYEEKPPYAMLRN  329 (352)
T ss_dssp             ---------------------------TTSCEECCCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             ---------------------------hccccCCCcHHHHHHHHHHHhCChhhCCCHHHHHH
Confidence                                       00011234678999999999999999999999875

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.97  E-value=1.5e-31  Score=258.02  Aligned_cols=217  Identities=15%  Similarity=0.165  Sum_probs=170.3

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccChh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNES   98 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~~   98 (358)
                      ++..||+|.+.....  ....+.++++...++  .|++++.+...... ...+|+|||||.||+|.+++..  ...+.+.
T Consensus       244 ~~~~vavK~~~~~~~--~~~~~~~E~~~l~~l--~hpniv~l~~~~~~-~~~~~lv~E~~~~g~L~~~l~~~~~~~~~~~  318 (495)
T 1opk_A          244 YSLTVAVKTLKEDTM--EVEEFLKEAAVMKEI--KHPNLVQLLGVCTR-EPPFYIITEFMTYGNLLDYLRECNRQEVSAV  318 (495)
T ss_dssp             GTEEEEEEECCSSSS--CHHHHHHHHHHHHHC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHSCTTTSCHH
T ss_pred             CCeEEEEEEecCccc--chHHHHHHHHHHHhc--CCCCEeeEEEEEec-CCcEEEEEEccCCCCHHHHHHhcCcCCCCHH
Confidence            467899999976533  356677777777664  67888887766543 4578999999999999999874  3447788


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .+..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....+|..|+|||++.+..|+.
T Consensus       319 ~~~~i~~qi~~~L~~LH~~~ivHrDlkp~NIll~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  398 (495)
T 1opk_A          319 VLLYMATQISSAMEYLEKKNFIHRNLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSI  398 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEECCTTCCEECCTTCCCCGGGCCHHHHHHCEECH
T ss_pred             HHHHHHHHHHHHHHHHHhCCcccCCCChhhEEECCCCcEEEeecccceeccCCceeecCCCcCCcceeCHhHHhcCCCCc
Confidence            899999999999999999999999    9999999999999999999875432    22335678899999999988999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |..||.+.+.      ......+....                                    
T Consensus       399 ~sDvwSlG~~l~el~t~g~~p~~~~~~------~~~~~~~~~~~------------------------------------  436 (495)
T 1opk_A          399 KSDVWAFGVLLWEIATYGMSPYPGIDL------SQVYELLEKDY------------------------------------  436 (495)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHTTC------------------------------------
T ss_pred             HHhHHhHHHHHHHHHhCCCCCCCCCCH------HHHHHHHHcCC------------------------------------
Confidence            9999999999999999 9999975431      11111111000                                    


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+..++..+.+||.+||+.||++|||+.++++
T Consensus       437 -----~~~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~  471 (495)
T 1opk_A          437 -----RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  471 (495)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHH
Confidence                 11234455788999999999999999999999976

>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*

Probab=99.97  E-value=3.5e-31  Score=263.15  Aligned_cols=218  Identities=12%  Similarity=0.111  Sum_probs=172.6

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~   99 (358)
                      .+..||+|.+....+...+.++.++.....++  .|++++.+....  .++..|+||||++||+|.+++... ..+++..
T Consensus       417 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l--~HpnIv~l~~~~--~~~~~~lv~E~~~~g~L~~~l~~~~~~l~~~~  492 (656)
T 2j0j_A          417 PAMAVAIKTCKNCTSDSVREKFLQEALTMRQF--DHPHIVKLIGVI--TENPVWIIMELCTLGELRSFLQVRKFSLDLAS  492 (656)
T ss_dssp             CCEEEEEEECSSTTCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEE--CSSSCEEEEECCTTCBHHHHHHHTTTTCCHHH
T ss_pred             ccEEEEEEEecccCCHHHHHHHHHHHHHHHhC--CCCCCCeEEEEE--ecCceEEEEEcCCCCcHHHHHHhccCCCCHHH
Confidence            34568999988877777778888888777764  678888877654  345689999999999999988744 3578888


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCcc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      +..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....+|+.|+|||++.+..|+.+
T Consensus       493 ~~~i~~qi~~aL~~LH~~givHrDikp~NILl~~~~~vkL~DFG~a~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  572 (656)
T 2j0j_A          493 LILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSA  572 (656)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECCCCCCCSCCC----------CCGGGCCHHHHHHCCCCHH
T ss_pred             HHHHHHHHHHHHHHHHhCCccccccchHhEEEeCCCCEEEEecCCCeecCCCcceeccCCCCCcceeCHHHhcCCCCCch
Confidence            99999999999999999999999    9999999999999999999765432    223456789999999999899999


Q ss_pred             hhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          172 ADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       172 ~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      +|||||||++|+|++ |..||.+..      ..+.+..+....                                     
T Consensus       573 ~DiwSlG~il~ellt~g~~Pf~~~~------~~~~~~~i~~~~-------------------------------------  609 (656)
T 2j0j_A          573 SDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIENGE-------------------------------------  609 (656)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHHTC-------------------------------------
T ss_pred             hhHHHHHHHHHHHHHcCCCCCCCCC------HHHHHHHHHcCC-------------------------------------
Confidence            999999999999997 999997543      233332222110                                     


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                          ....+..+++.+.+||.+||..||.+|||+.++++
T Consensus       610 ----~~~~~~~~~~~l~~li~~~l~~dP~~RPs~~el~~  644 (656)
T 2j0j_A          610 ----RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKA  644 (656)
T ss_dssp             ----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ----CCCCCccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                11233455778999999999999999999999975

>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*

Probab=99.97  E-value=4.5e-32  Score=242.74  Aligned_cols=217  Identities=16%  Similarity=0.101  Sum_probs=167.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---------------CCCCCCCcccccCCCCC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---------------PSSPDNFSVDTIPNGVS   84 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~iv~e~~~gg~   84 (358)
                      .+|..+|+|.+....     .++.++.+....+  .|++++.......               ......|+||||++||+
T Consensus        34 ~~~~~vavK~~~~~~-----~~~~~e~~~l~~l--~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~  106 (284)
T 2a19_B           34 IDGKTYVIKRVKYNN-----EKAEREVKALAKL--DHVNIVHYNGCWDGFDYDPETSSKNSSRSKTKCLFIQMEFCDKGT  106 (284)
T ss_dssp             TTCCEEEEEEEECCS-----GGGHHHHHHHHHC--CCTTBCCEEEEEEEEEEC---------CCEEEEEEEEECCCCSCB
T ss_pred             CCCeEEEEEEecccc-----HHHHHHHHHHHhC--CCCCEEEEeeeEeccccCcccccccccccCcceEEEEEeccCCCC
Confidence            367788999886542     3455666665553  5666666544221               12345799999999999


Q ss_pred             cccccccc--cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--CCCCccCCC
Q 045353           85 VEERQNDS--VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--FTNDIQTRQ  156 (358)
Q Consensus        85 L~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--~~~~~gt~~  156 (358)
                      |.+++...  ..+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......  .....||+.
T Consensus       107 L~~~l~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~  186 (284)
T 2a19_B          107 LEQWIEKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKIGDFGLVTSLKNDGKRTRSKGTLR  186 (284)
T ss_dssp             HHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEESSCCSCCCCCCSCCT
T ss_pred             HHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCCHHHEEEcCCCCEEECcchhheeccccccccccCCccc
Confidence            99998643  467888999999999999999999999998    9999999999999999999775432  345579999


Q ss_pred             cchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCC
Q 045353          157 YRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD  236 (358)
Q Consensus       157 Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~  236 (358)
                      |+|||++.+..++.++|||||||++|+|++|..||..         ...  ....+.                       
T Consensus       187 y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~---------~~~--~~~~~~-----------------------  232 (284)
T 2a19_B          187 YMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFE---------TSK--FFTDLR-----------------------  232 (284)
T ss_dssp             TSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHH---------HHH--HHHHHH-----------------------
T ss_pred             ccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchh---------HHH--HHHHhh-----------------------
Confidence            9999999999999999999999999999999888731         100  000000                       


Q ss_pred             chhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                        ....+...+..+.+||.+||..||.+|||+.|+++|.|.-.
T Consensus       233 ------------------~~~~~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~  273 (284)
T 2a19_B          233 ------------------DGIISDIFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWK  273 (284)
T ss_dssp             ------------------TTCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHT
T ss_pred             ------------------cccccccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHh
Confidence                              00112334677889999999999999999999999988754

>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}

Probab=99.97  E-value=2.1e-31  Score=241.85  Aligned_cols=222  Identities=17%  Similarity=0.189  Sum_probs=162.1

Q ss_pred             ccCcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|.+......+  ...++.++.+....+  .+++++........ ....|+||||++|++|.+++.....+++
T Consensus        57 ~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l--~hp~iv~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~~  133 (309)
T 2h34_A           57 VRERIVALKLMSETLSSDPVFRTRMQREARTAGRL--QEPHVVPIHDFGEI-DGQLYVDMRLINGVDLAAMLRRQGPLAP  133 (309)
T ss_dssp             TTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEEE-TTEEEEEEECCCCEEHHHHHHHHCSCCH
T ss_pred             CCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhc--CCCCeeEEEEEEee-CCeEEEEEEecCCCCHHHHHHhcCCCCH
Confidence            357789999988765443  346666776666653  56777776655433 4578999999999999999987777899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      .++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......    .....||+.|+|||++.+..++
T Consensus       134 ~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  213 (309)
T 2h34_A          134 PRAVAIVRQIGSALDAAHAAGATHRDVKPENILVSADDFAYLVDFGIASATTDEKLTQLGNTVGTLYYMAPERFSESHAT  213 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSCCC----------------CCGGGCCGGGTCC----
T ss_pred             HHHHHHHHHHHHHHHHHHHCcCCcCCCChHHEEEcCCCCEEEecCccCccccccccccccccCCCcCccCHHHHcCCCCC
Confidence            9999999999999999999999998    9999999999999999999765432    2345799999999999998899


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+..       ...+....  ....+.                               
T Consensus       214 ~~~Di~slG~il~~l~~g~~pf~~~~-------~~~~~~~~--~~~~~~-------------------------------  253 (309)
T 2h34_A          214 YRADIYALTCVLYECLTGSPPYQGDQ-------LSVMGAHI--NQAIPR-------------------------------  253 (309)
T ss_dssp             CCCHHHHHHHHHHHHHHSSCSSCSCH-------HHHHHHHH--HSCCCC-------------------------------
T ss_pred             chHhHHHHHHHHHHHHHCCCCCCCch-------HHHHHHHh--ccCCCC-------------------------------
Confidence            99999999999999999999996432       11111111  111100                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-CHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-TAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-ta~elL~  289 (358)
                           ....+..++..+.+||.+||..||++|| |++++++
T Consensus       254 -----~~~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~  289 (309)
T 2h34_A          254 -----PSTVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSA  289 (309)
T ss_dssp             -----GGGTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHH
T ss_pred             -----ccccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHH
Confidence                 0112344567889999999999999999 8888775

>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A

Probab=99.97  E-value=1.2e-31  Score=249.03  Aligned_cols=198  Identities=11%  Similarity=0.001  Sum_probs=148.8

Q ss_pred             cCCCccccccCCCCCC---CCCCCcccccCCCCCcccccccc-cccChhhhhHHHHhhhhccccccCCCCCCc----ccc
Q 045353           54 AGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDS-VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNL  125 (358)
Q Consensus        54 ~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NI  125 (358)
                      +.|++++.+.......   ....|+||||| ||+|.+++... ..+++.++..++.+++.|+.|+|+.+++||    +||
T Consensus       105 l~h~~iv~~~~~~~~~~~~~~~~~lv~e~~-g~~L~~~~~~~~~~l~~~~~~~i~~qi~~~l~~lH~~~iiHrDlkp~Ni  183 (364)
T 3op5_A          105 LKYLGVPKYWGSGLHDKNGKSYRFMIMDRF-GSDLQKIYEANAKRFSRKTVLQLSLRILDILEYIHEHEYVHGDIKASNL  183 (364)
T ss_dssp             CSCCCSCCEEEEEEEEETTEEEEEEEEECE-EEEHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGE
T ss_pred             ccCCCCCeEEeeeeeccCCcceEEEEEeCC-CCCHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHCCeEEecCCHHHE
Confidence            4567777766544322   24579999999 99999998764 568899999999999999999999999999    999


Q ss_pred             ccc--CCCcEEEEecCCceecCCC----------CCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCC
Q 045353          126 LAA--VDVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDP  193 (358)
Q Consensus       126 Ll~--~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~  193 (358)
                      |++  .++.+||+|||+|+.....          ....+||+.|+|||++.+..++.++|||||||++|+|++|+.||.+
T Consensus       184 ll~~~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf~~  263 (364)
T 3op5_A          184 LLNYKNPDQVYLVDYGLAYRYCPEGVHKAYAADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPWED  263 (364)
T ss_dssp             EEESSCTTCEEECCCTTCEESSGGGCCCCSSCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTTGG
T ss_pred             EEecCCCCeEEEEECCcceecccCCcccccccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCccc
Confidence            999  8899999999999764322          1334699999999999999999999999999999999999999975


Q ss_pred             CCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhc
Q 045353          194 HSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPI  273 (358)
Q Consensus       194 ~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~  273 (358)
                      ...     +..........+.....                               ... .........+..+.+||..|
T Consensus       264 ~~~-----~~~~~~~~~~~~~~~~~-------------------------------~~~-~~~~~~~~~~~~~~~li~~c  306 (364)
T 3op5_A          264 NLK-----DPKYVRDSKIRYRENIA-------------------------------SLM-DKCFPAANAPGEIAKYMETV  306 (364)
T ss_dssp             GTT-----CHHHHHHHHHHHHHCHH-------------------------------HHH-HHHSCTTCCCHHHHHHHHHH
T ss_pred             ccc-----CHHHHHHHHHHhhhhHH-------------------------------HHH-HHhcccccCHHHHHHHHHHH
Confidence            331     12222111111100000                               000 00011134467899999999


Q ss_pred             cccCCCCCCCHHHHhc
Q 045353          274 LDFVPEKRPTAAQCLS  289 (358)
Q Consensus       274 L~~dP~~R~ta~elL~  289 (358)
                      |..||.+|||+.++++
T Consensus       307 l~~~p~~RP~~~~l~~  322 (364)
T 3op5_A          307 KLLDYTEKPLYENLRD  322 (364)
T ss_dssp             HTCCTTCCCCHHHHHH
T ss_pred             hcCCCCCCCCHHHHHH
Confidence            9999999999999865

>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*

Probab=99.97  E-value=1.2e-30  Score=236.31  Aligned_cols=234  Identities=19%  Similarity=0.161  Sum_probs=171.4

Q ss_pred             ccCcccccccccCcc---chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc---cc
Q 045353           20 ESSASKENKSLYGDL---TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND---SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~---~~   93 (358)
                      .+|..+|+|.+....   .+..+.++.++.+...++  .|++++........ ....|+||||++||+|.+++..   ..
T Consensus        52 ~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~~-~~~~~lv~e~~~~~~L~~~l~~~~~~~  128 (307)
T 2nru_A           52 VNNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKC--QHENLVELLGFSSD-GDDLCLVYVYMPNGSLLDRLSCLDGTP  128 (307)
T ss_dssp             SSSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHC--CCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTGGGCC
T ss_pred             ECCceEEEEEEecccCcchHHHHHHHHHHHHHHHhc--CCCCeEEEEEEEec-CCceEEEEEecCCCcHHHHHHhccCCC
Confidence            367788999887643   344567777777777664  57777777665443 4578999999999999998863   23


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHh
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~  164 (358)
                      .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......     .....||+.|+|||++.
T Consensus       129 ~~~~~~~~~i~~~i~~~l~~lH~~~i~H~dlkp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~  208 (307)
T 2nru_A          129 PLSWHMRCKIAQGAANGINFLHENHHIHRDIKSANILLDEAFTAKISDFGLARASEKFAQTVMTSRIVGTTAYMAPEALR  208 (307)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECCSCSSCEECSSCCSCGGGCCHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCeecCCCCHHHEEEcCCCcEEEeecccccccccccccccccccCCCcCcCChHHhc
Confidence            47788899999999999999999999998    9999999999999999999765432     23457999999999987


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      + .++.++|||||||++|+|++|.+||..........  .....+.   ...+                  .+.....  
T Consensus       209 ~-~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~~~~~--~~~~~~~---~~~~------------------~~~~~~~--  262 (307)
T 2nru_A          209 G-EITPKSDIYSFGVVLLEIITGLPAVDEHREPQLLL--DIKEEIE---DEEK------------------TIEDYID--  262 (307)
T ss_dssp             T-EECTHHHHHHHHHHHHHHHHCCCSBCTTBSSSBTT--HHHHHHH---TTSC------------------CHHHHSC--
T ss_pred             C-CCCccchhHHHHHHHHHHHHCCCCcccCcchHHHH--HHHHHhh---hhhh------------------hhhhhcc--
Confidence            6 48899999999999999999999997654322110  1111100   0000                  0000000  


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                              ......+...+..+.+|+.+||+.||.+|||+.+++++
T Consensus       263 --------~~~~~~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~~  300 (307)
T 2nru_A          263 --------KKMNDADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQL  300 (307)
T ss_dssp             --------SSCSCCCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             --------ccccccchHHHHHHHHHHHHHcCCCcccCcCHHHHHHH
Confidence                    00012344567889999999999999999999999864

>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*

Probab=99.97  E-value=2.5e-31  Score=244.44  Aligned_cols=229  Identities=16%  Similarity=0.124  Sum_probs=164.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC---CCCCcccccCCCCCcccccccccccCh
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS---PDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      +|..||+|.+...    ....+.++.+........|++++..........   ...|+||||++||+|.+++... .+++
T Consensus        64 ~~~~vavK~~~~~----~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~~~~~~~~lv~e~~~~g~L~~~l~~~-~~~~  138 (342)
T 1b6c_B           64 RGEEVAVKIFSSR----EERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-TVTV  138 (342)
T ss_dssp             TTEEEEEEEECGG----GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCCSSCCCEEEEECCCTTCBHHHHHHHC-CBCH
T ss_pred             cCccEEEEEeCch----hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccCCccceeEEEEeecCCCcHHHHHhcc-CccH
Confidence            5778999988543    334555565555554457777777766554433   4789999999999999998653 5788


Q ss_pred             hhhhHHHHhhhhcccccc--------CCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcc
Q 045353           98 SSRDNEVKNTSQGVKGHR--------RPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYR  158 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h--------~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~  158 (358)
                      .++..++.+++.++.++|        +.+++|+    +|||++.++.+||+|||++......       .....||+.|+
T Consensus       139 ~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dlkp~NIll~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~gt~~y~  218 (342)
T 1b6c_B          139 EGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYM  218 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCSGGGEEECTTSCEEECCCTTCEEEETTTTEEEECCCSCCCCGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccCCeeeCCCCHHHEEECCCCCEEEEECCCceeccccccccccccccCCcCcccC
Confidence            899999999999999999        8899998    9999999999999999999765432       34558999999


Q ss_pred             hhHHHhCCC------CCcchhhhhhhHHHHhhhcC----------CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhc
Q 045353          159 CPEVLLGSK------YSTSADLWSFACICFELATG----------DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIAL  222 (358)
Q Consensus       159 aPE~l~~~~------~~~~~DiwSlGvil~ell~g----------~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~  222 (358)
                      |||++.+..      ++.++|||||||++|+|++|          ..||........  ....+......-...+.    
T Consensus       219 aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~~~~p~~~~~~~~~--~~~~~~~~~~~~~~~~~----  292 (342)
T 1b6c_B          219 APEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDP--SVEEMRKVVCEQKLRPN----  292 (342)
T ss_dssp             CHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBCCCCCCTTTTTSCSSC--CHHHHHHHHTTSCCCCC----
T ss_pred             CHhhhcccccccccccCCcccHHHHHHHHHHHHhccCcCCcccccccCccccCcCcc--cHHHHHHHHHHHHhCCC----
Confidence            999998763      34689999999999999999          566654322111  11111111100000000    


Q ss_pred             CCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          223 GGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                               ..     ........+..+.+||.+||+.||++|||+.++++|
T Consensus       293 -------------------------~~-----~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~~i~~~  330 (342)
T 1b6c_B          293 -------------------------IP-----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  330 (342)
T ss_dssp             -------------------------CC-----GGGGTSHHHHHHHHHHHHHCCSSGGGSCCHHHHHHH
T ss_pred             -------------------------Cc-----ccccchhHHHHHHHHHHHHhccChhhCCCHHHHHHH
Confidence                                     00     000123456789999999999999999999999875

>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...

Probab=99.97  E-value=2.5e-31  Score=238.52  Aligned_cols=218  Identities=15%  Similarity=0.165  Sum_probs=168.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~   97 (358)
                      .+|..+|+|.+...-  .....+.++.+...++  .|++++....... .....|+||||++||+|.+++..  ...+++
T Consensus        36 ~~~~~vaiK~~~~~~--~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~~v~e~~~~~~L~~~~~~~~~~~~~~  110 (288)
T 3kfa_A           36 KYSLTVAVKTLKEDT--MEVEEFLKEAAVMKEI--KHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSA  110 (288)
T ss_dssp             GGTEEEEEEEECSCS--THHHHHHHHHHHHHHC--CCTTBCCEEEEEC-SSSSEEEEEECCTTEEHHHHHHHCCTTTSCH
T ss_pred             CCCEEEEEEecCcCH--HHHHHHHHHHHHHHhC--CCCCEeeEEEEEc-cCCCEEEEEEcCCCCcHHHHHHhcccCCccH
Confidence            346788999887543  3456677777766664  5777777766543 34568999999999999999875  344788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||+|......    .....+|+.|+|||++.+..++
T Consensus       111 ~~~~~i~~~i~~~l~~lH~~~i~H~dikp~Nil~~~~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~  190 (288)
T 3kfa_A          111 VVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS  190 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCSCCSGGGEEECGGGCEEECCCCGGGTSCSSSSEEETTEEECGGGCCHHHHHHCCCC
T ss_pred             hHHHHHHHHHHHHHHHHHHCCccCCCCCcceEEEcCCCCEEEccCccceeccCCccccccCCccccCcCChhhhccCCCC
Confidence            8999999999999999999999998    9999999999999999999765432    2234568889999999999999


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|+|++ |..||.+...      ......+....                                   
T Consensus       191 ~~~Di~slG~il~~ll~~g~~p~~~~~~------~~~~~~~~~~~-----------------------------------  229 (288)
T 3kfa_A          191 IKSDVWAFGVLLWEIATYGMSPYPGIDL------SQVYELLEKDY-----------------------------------  229 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTCCG------GGHHHHHHTTC-----------------------------------
T ss_pred             chhhHHHHHHHHHHHHhCCCCCCCCCCH------HHHHHHHhccC-----------------------------------
Confidence            99999999999999999 9999965431      11111111000                                   


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                            ....+...++.+.+||.+||..||.+|||+.++++
T Consensus       230 ------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~  264 (288)
T 3kfa_A          230 ------RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  264 (288)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ------CCCCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHH
Confidence                  11223445678999999999999999999999976

>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}

Probab=99.96  E-value=5.8e-31  Score=252.34  Aligned_cols=224  Identities=15%  Similarity=0.035  Sum_probs=162.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..||+|++.......   .+.++.+....+. ++..+..+ ..........|+||||+ |++|.+++.. ...+++.
T Consensus        30 ~~~~~vAvK~~~~~~~~~---~~~~E~~il~~L~-~~~~i~~i-~~~~~~~~~~~lvme~~-g~sL~~ll~~~~~~l~~~  103 (483)
T 3sv0_A           30 QTNEEVAIKLENVKTKHP---QLLYESKIYRILQ-GGTGIPNV-RWFGVEGDYNVLVMDLL-GPSLEDLFNFCSRKLSLK  103 (483)
T ss_dssp             TTCCEEEEEEEETTCSSC---CHHHHHHHHHHTT-TSTTCCCE-EEEEEETTEEEEEEECC-CCBHHHHHHHTTTCCCHH
T ss_pred             CCCcEEEEEEeccccccH---HHHHHHHHHHHhc-CCCCCCeE-EEEEeeCCEEEEEEECC-CCCHHHHHHhhcCCCCHH
Confidence            567789999876544332   3455555554432 22222222 22222345679999999 9999998874 4568889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccc---cCCCcEEEEecCCceecCCCC----------CCCccCCCcchhH
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLA---AVDVQCKLVDFGNACWTHKQF----------TNDIQTRQYRCPE  161 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl---~~~~~vkL~DFG~a~~~~~~~----------~~~~gt~~Y~aPE  161 (358)
                      .+..++.+++.++.|+|+.+++||    +|||+   +.++.+||+|||+|+......          ...+||+.|+|||
T Consensus       104 ~~~~i~~qi~~aL~yLH~~gIvHrDIKP~NILl~~~~~~~~vkL~DFGla~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE  183 (483)
T 3sv0_A          104 TVLMLADQMINRVEFVHSKSFLHRDIKPDNFLMGLGRRANQVYIIDFGLAKKYRDTSTHQHIPYRENKNLTGTARYASVN  183 (483)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECCGGGTTCEEECCCTTCEECBCTTTCCBCCCCCCCCCCSCTTTCCHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCEeecccCcceEEEecCCCCCeEEEEeCCcceeccCCccccccccccccccCCCccccCHH
Confidence            999999999999999999999999    99999   688999999999997654321          2558999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..++.++|||||||++|+|++|+.||.+.....   ....+..+....-..+                        
T Consensus       184 ~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~---~~~~~~~i~~~~~~~~------------------------  236 (483)
T 3sv0_A          184 THLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGT---KKQKYEKISEKKVATS------------------------  236 (483)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSS---HHHHHHHHHHHHHHSC------------------------
T ss_pred             HhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchh---HHHHHHHHhhcccccc------------------------
Confidence            9999999999999999999999999999997654221   1222222211100000                        


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                   ...+...++.++.+||..||..||++||++.+|++
T Consensus       237 -------------~~~l~~~~p~~l~~li~~cl~~dP~~RPs~~el~~  271 (483)
T 3sv0_A          237 -------------IEALCRGYPTEFASYFHYCRSLRFDDKPDYSYLKR  271 (483)
T ss_dssp             -------------HHHHHTTSCHHHHHHHHHHHTCCTTCCCCHHHHHH
T ss_pred             -------------HHHHhcCCcHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                         00111234678999999999999999999988753

>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*

Probab=99.96  E-value=9.9e-31  Score=237.29  Aligned_cols=224  Identities=14%  Similarity=0.122  Sum_probs=160.2

Q ss_pred             ccCcccccccccCc--cchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc----cc
Q 045353           20 ESSASKENKSLYGD--LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND----SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~----~~   93 (358)
                      .+|..+|+|.+...  .......++.++.+....+  .+++++....... .....|+||||++||+|.+++..    ..
T Consensus        55 ~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l--~h~~i~~~~~~~~-~~~~~~lv~e~~~~~~L~~~l~~~~~~~~  131 (310)
T 2wqm_A           55 LDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQL--NHPNVIKYYASFI-EDNELNIVLELADAGDLSRMIKHFKKQKR  131 (310)
T ss_dssp             TTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTC--CCTTBCCEEEEEE-ETTEEEEEEECCCSCBHHHHHHHHHHTTC
T ss_pred             CCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEE-cCCcEEEEEecCCCCCHHHHHHHhccccc
Confidence            46788999988752  3344556677777666664  5677777665443 24578999999999999998863    44


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~~  166 (358)
                      .+++..+..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......   .....||+.|+|||++.+.
T Consensus       132 ~~~~~~~~~i~~qi~~~l~~LH~~~i~H~dl~p~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  211 (310)
T 2wqm_A          132 LIPERTVWKYFVQLCSALEHMHSRRVMHRDIKPANVFITATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHEN  211 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCC------------------CCSSCCHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhhCCeeCCCCcHHHEEEcCCCCEEEEeccceeeecCCCccccccCCCeeEeChHHhCCC
Confidence            57888999999999999999999999999    9999999999999999999765432   2345789999999999998


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||.+...     ....+.........++                             
T Consensus       212 ~~~~~~Dv~slG~il~~l~~g~~p~~~~~~-----~~~~~~~~~~~~~~~~-----------------------------  257 (310)
T 2wqm_A          212 GYNFKSDIWSLGCLLYEMAALQSPFYGDKM-----NLYSLCKKIEQCDYPP-----------------------------  257 (310)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSSCTTC---C-----CHHHHHHHHHTTCSCC-----------------------------
T ss_pred             CCCchhhHHHHHHHHHHHHhCCCCCcccch-----hHHHHHHHhhcccCCC-----------------------------
Confidence            999999999999999999999999964331     1111111111000000                             


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                ......+..+.+||.+||..||.+|||+.+++++
T Consensus       258 ----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~  291 (310)
T 2wqm_A          258 ----------LPSDHYSEELRQLVNMCINPDPEKRPDVTYVYDV  291 (310)
T ss_dssp             ----------CCTTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----------CcccccCHHHHHHHHHHcCCChhhCCCHHHHHHH
Confidence                      0112346789999999999999999999999863

>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*

Probab=99.96  E-value=3.5e-31  Score=237.81  Aligned_cols=216  Identities=17%  Similarity=0.118  Sum_probs=162.8

Q ss_pred             ccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhh
Q 045353           24 SKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSR  100 (358)
Q Consensus        24 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~  100 (358)
                      .||+|++.....  ....+++.++.+...++  .|++++........  ...++||||+.+|+|.+++... ..+++..+
T Consensus        48 ~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l--~h~~i~~~~~~~~~--~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~  123 (291)
T 1u46_A           48 SVAVKCLKPDVLSQPEAMDDFIREVNAMHSL--DHRNLIRLYGVVLT--PPMKMVTELAPLGSLLDRLRKHQGHFLLGTL  123 (291)
T ss_dssp             EEEEEC--------CHHHHHHHHHHHHHHHC--CCTTBCCEEEEECS--SSCEEEEECCTTCBHHHHHHHHGGGSCHHHH
T ss_pred             EEEEEEEccCccCCHHHHHHHHHHHHHHHhC--CCCCcccEEEEEcc--CCceeeEecccCCCHHHHHHhccCCcCHHHH
Confidence            589999876543  34456677777776664  57777777766554  3489999999999999988753 56788899


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCCc
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....+|+.|+|||++.+..++.
T Consensus       124 ~~~~~~i~~~l~~lH~~~i~H~dikp~Nili~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~  203 (291)
T 1u46_A          124 SRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSH  203 (291)
T ss_dssp             HHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEEEH
T ss_pred             HHHHHHHHHHHHHHHhCCcccCCCchheEEEcCCCCEEEccccccccccccccchhhhccCCCCceeeCchhhcCCCCCc
Confidence            9999999999999999999998    9999999999999999999775432      22346788999999999888999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|+|++ |..||.+..      ....+..+.....                                   
T Consensus       204 ~~Di~slG~il~~l~~~g~~p~~~~~------~~~~~~~~~~~~~-----------------------------------  242 (291)
T 1u46_A          204 ASDTWMFGVTLWEMFTYGQEPWIGLN------GSQILHKIDKEGE-----------------------------------  242 (291)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTSCC-----------------------------------
T ss_pred             hhhHHHHHHHHHHHHhCCCCCcccCC------HHHHHHHHHccCC-----------------------------------
Confidence            9999999999999999 999997543      2222222211000                                   


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+...+..+.+||.+||..||.+|||+.++++
T Consensus       243 -----~~~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~  277 (291)
T 1u46_A          243 -----RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRD  277 (291)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCcCcCHHHHHHHHHHccCCcccCcCHHHHHH
Confidence                 01122345678999999999999999999999987

>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*

Probab=99.96  E-value=1.4e-31  Score=241.75  Aligned_cols=208  Identities=20%  Similarity=0.254  Sum_probs=152.5

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCccccccccc--c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDSV--V   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~~--~   94 (358)
                      .+|..+|+|.+..      .....++.....+. ..+++++.......   ......|+||||++||+|.+++....  .
T Consensus        41 ~~~~~vaiK~~~~------~~~~~~e~~~~~~~-~~h~~i~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~  113 (299)
T 3m2w_A           41 RTQEKFALKMLQD------CPKARREVELHWRA-SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA  113 (299)
T ss_dssp             TTCCEEEEEEEEC------SHHHHHHHHHHHHH-TTSTTBCCEEEEEEEEETTEEEEEEEECCCCSCBHHHHHHHCTTCC
T ss_pred             CCCcEEEEEEecc------cHHHHHHHHHHHHh-ccCCCchhHHhhhhhhcCCCceEEEEEeecCCCcHHHHHHhccCCC
Confidence            4677899998853      23444555444333 35667766655433   23566899999999999999987543  5


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      +++.++..++.+++.|+.++|+.+++|+    +|||++.   ++.+||+|||+|.....                   ..
T Consensus       114 ~~~~~~~~i~~qi~~~l~~lH~~~i~H~dlkp~Nil~~~~~~~~~~kl~Dfg~a~~~~~-------------------~~  174 (299)
T 3m2w_A          114 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTG-------------------EK  174 (299)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESSSSTTCCEEECCCTTCEECTT-------------------CG
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEecCCCCCcEEEecccccccccc-------------------cc
Confidence            8899999999999999999999999999    9999998   78999999999865432                   34


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      |+.++|||||||++|+|++|..||.+......             .....                              
T Consensus       175 ~~~~~DiwslG~il~el~tg~~pf~~~~~~~~-------------~~~~~------------------------------  211 (299)
T 3m2w_A          175 YDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI-------------SPGMK------------------------------  211 (299)
T ss_dssp             GGGHHHHHHHHHHHHHHHHSSCSCCC--------------------CCSC------------------------------
T ss_pred             CCchhhHHHHHHHHHHHHHCCCCCCCCcchhh-------------hHHHH------------------------------
Confidence            78899999999999999999999965432110             00000                              


Q ss_pred             chhhHHhhhcCC----hhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          248 MNKVLVEKYDFN----ERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       248 ~~~~~~~~~~~~----~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                       .........++    ...++.+.+||.+||+.||.+|||+.|+|+||||....
T Consensus       212 -~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~hp~~~~~~  264 (299)
T 3m2w_A          212 -TRIRMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQST  264 (299)
T ss_dssp             -CSSCTTCCSSCHHHHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHTGG
T ss_pred             -HHHhhccccCCchhcccCCHHHHHHHHHHcccChhhCCCHHHHhcChhhcccc
Confidence             00000000111    23477899999999999999999999999999998653

>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}

Probab=99.96  E-value=4e-31  Score=242.23  Aligned_cols=221  Identities=15%  Similarity=0.171  Sum_probs=148.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC-------CCCCCCCCcccccCCCCCccccccc-
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS-------KPSSPDNFSVDTIPNGVSVEERQND-   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~iv~e~~~gg~L~~~~~~-   91 (358)
                      .+|..+|+|.+... .......+.++.+...++. .|++++.+....       .......|+||||++ |+|.+++.. 
T Consensus        51 ~~~~~vavK~~~~~-~~~~~~~~~~e~~~l~~l~-~h~~iv~~~~~~~~~~~~~~~~~~~~~lv~e~~~-g~L~~~l~~~  127 (337)
T 3ll6_A           51 GSGREYALKRLLSN-EEEKNRAIIQEVCFMKKLS-GHPNIVQFCSAASIGKEESDTGQAEFLLLTELCK-GQLVEFLKKM  127 (337)
T ss_dssp             TTCCEEEEEEEEES-SHHHHHHHHHHHHHHHHHT-TSTTBCCEEEEEEECTTTSTTSSEEEEEEEECCS-EEHHHHHHHH
T ss_pred             CCCcEEEEEEecCC-chHHHHHHHHHHHHHHHhc-cCCChhhccccccccccccccCCceEEEEEEecC-CCHHHHHHHh
Confidence            36778999988544 2334455666666665542 577777665433       234456899999997 688777653 


Q ss_pred             --ccccChhhhhHHHHhhhhccccccCCC--CCCc----ccccccCCCcEEEEecCCceecCCCC---------------
Q 045353           92 --SVVNNESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAAVDVQCKLVDFGNACWTHKQF---------------  148 (358)
Q Consensus        92 --~~~~~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~---------------  148 (358)
                        ...+++..+..++.+++.++.++|..+  ++|+    +|||++.++.+||+|||++.......               
T Consensus       128 ~~~~~~~~~~~~~i~~qi~~~l~~LH~~~~~ivH~Dikp~NIl~~~~~~~kl~Dfg~~~~~~~~~~~~~~~~~~~~~~~~  207 (337)
T 3ll6_A          128 ESRGPLSCDTVLKIFYQTCRAVQHMHRQKPPIIHRDLKVENLLLSNQGTIKLCDFGSATTISHYPDYSWSAQRRALVEEE  207 (337)
T ss_dssp             HTTCSCCHHHHHHHHHHHHHHHHHHHTSSSCCBCCCCCGGGCEECTTSCEEBCCCTTCBCCSSCC---------------
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHhCCCCEEEccCCcccEEECCCCCEEEecCccceeccccCcccccccccccchhh
Confidence              455888999999999999999999999  9999    99999999999999999997654321               


Q ss_pred             CCCccCCCcchhHHH---hCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          149 TNDIQTRQYRCPEVL---LGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       149 ~~~~gt~~Y~aPE~l---~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                      ...+||+.|+|||++   .+..++.++|||||||++|+|++|..||......         ..+.....           
T Consensus       208 ~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~---------~~~~~~~~-----------  267 (337)
T 3ll6_A          208 ITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL---------RIVNGKYS-----------  267 (337)
T ss_dssp             ----------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC---------------------CC-----------
T ss_pred             ccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH---------HhhcCccc-----------
Confidence            144689999999999   4566899999999999999999999999643210         00000000           


Q ss_pred             CChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                                    .......+..+.+||.+||+.||.+|||+.|+++|-+-
T Consensus       268 ------------------------------~~~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~  305 (337)
T 3ll6_A          268 ------------------------------IPPHDTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQE  305 (337)
T ss_dssp             ------------------------------CCTTCCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred             ------------------------------CCcccccchHHHHHHHHHccCChhhCcCHHHHHHHHHH
Confidence                                          00111223457899999999999999999999998654

>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.1e-30  Score=237.01  Aligned_cols=235  Identities=14%  Similarity=0.112  Sum_probs=170.4

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCcccccccc-cccC
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQNDS-VVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~~-~~~~   96 (358)
                      ..+|..||+|.+... .....+++.++.+....+  .+++++........ .....|+||||++||+|.+++... ..++
T Consensus        67 ~~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~~  143 (326)
T 2w1i_A           67 DNTGEVVAVKKLQHS-TEEHLRDFEREIEILKSL--QHDNIVKYKGVCYSAGRRNLKLIMEYLPYGSLRDYLQKHKERID  143 (326)
T ss_dssp             SSCCEEEEEEEESSC-CSHHHHHHHHHHHHHHTC--CCTTBCCEEEEECC----CCEEEECCCTTCBHHHHHHHSTTSSC
T ss_pred             CCCceEEEEEEeccC-CHHHHHHHHHHHHHHHhC--CCCCeeeEEEEEEecCCCceEEEEECCCCCCHHHHHHhcccCCC
Confidence            346778999998764 345556777777777664  57777776654332 235789999999999999998754 4578


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~  166 (358)
                      +.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......      .....+|..|+|||++.+.
T Consensus       144 ~~~~~~i~~qi~~aL~~LH~~~ivH~dikp~NIli~~~~~~kL~Dfg~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~  223 (326)
T 2w1i_A          144 HIKLLQYTSQICKGMEYLGTKRYIHRDLATRNILVENENRVKIGDFGLTKVLPQDKEYYKVKEPGESPIFWYAPESLTES  223 (326)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCSSCSEEECSSCCSCCGGGCCHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEEcCCCcEEEecCcchhhccccccccccccCCCCceeEECchhhcCC
Confidence            88999999999999999999999998    9999999999999999999776432      2234677889999999998


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .++.++|||||||++|+|++|..||....           ....+..+..+....        ..      ..       
T Consensus       224 ~~~~~~Di~slG~il~el~tg~~~~~~~~-----------~~~~~~~~~~~~~~~--------~~------~~-------  271 (326)
T 2w1i_A          224 KFSVASDVWSFGVVLYELFTYIEKSKSPP-----------AEFMRMIGNDKQGQM--------IV------FH-------  271 (326)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHTTCGGGSHH-----------HHHHHHHCTTCCTHH--------HH------HH-------
T ss_pred             CCCchhhHHHHHHHHHHHHhcCCCCCCCH-----------HHHHHhhccccchhh--------hH------HH-------
Confidence            89999999999999999999999885211           111111111110000        00      00       


Q ss_pred             cchhhHH--hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          247 PMNKVLV--EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       247 ~~~~~~~--~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                       ......  .....+..++..+.+||.+||..||++|||+.|+++
T Consensus       272 -~~~~~~~~~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~  315 (326)
T 2w1i_A          272 -LIELLKNNGRLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLAL  315 (326)
T ss_dssp             -HHHHHHTTCCCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred             -HHHHhhcCCCCCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHH
Confidence             000000  011234456788999999999999999999999975

>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A

Probab=99.96  E-value=4.7e-31  Score=242.32  Aligned_cols=175  Identities=11%  Similarity=0.077  Sum_probs=134.2

Q ss_pred             CCCCCcccccCCCCCcccccccccccChhhhhHHHHhhhhcccccc-CCCCCCc----ccccccCCC-------------
Q 045353           70 SPDNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHR-RPSRATR----KNLLAAVDV-------------  131 (358)
Q Consensus        70 ~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h-~~~~~hr----~NILl~~~~-------------  131 (358)
                      ...+|+|||||+||++.+.+.. ..+++.++..++.|++.|+.|+| +.+++||    +|||++.++             
T Consensus       134 ~~~~~lv~E~~~~g~ll~~~~~-~~~~~~~~~~i~~qi~~aL~~lH~~~~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~  212 (336)
T 2vuw_A          134 DDQLFIVLEFEFGGIDLEQMRT-KLSSLATAKSILHQLTASLAVAEASLRFEHRDLHWGNVLLKKTSLKKLHYTLNGKSS  212 (336)
T ss_dssp             TTCEEEEEEEECCCEETGGGTT-TCCCHHHHHHHHHHHHHHHHHHHHHHCCBCSCCCGGGEEEEECSCSEEEEEETTEEE
T ss_pred             cCeEEEEEEecCCCccHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHhCCEeECCCCHHHEEEeccCCcceeeeccCccc
Confidence            5789999999999987776644 45788999999999999999999 9999999    999999887             


Q ss_pred             -------cEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchhhhhhhHH-HHhhhcCCcccCCCCCCCCCCcH
Q 045353          132 -------QCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI-CFELATGDVLFDPHSGDNYDKDE  203 (358)
Q Consensus       132 -------~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvi-l~ell~g~~pf~~~~~~~~~~~~  203 (358)
                             .+||+|||+|+.....  ..+||+.|+|||++.+.. +.++||||++++ .+++++|..||.         ..
T Consensus       213 ~~~~~~~~vkL~DFG~a~~~~~~--~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~---------~~  280 (336)
T 2vuw_A          213 TIPSCGLQVSIIDYTLSRLERDG--IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYS---------NV  280 (336)
T ss_dssp             EEECTTEEEEECCCTTCBEEETT--EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHH---------HH
T ss_pred             cccCCCceEEEeeccccEecCCC--cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCc---------ch
Confidence                   8999999999876543  448999999999999876 899999998777 788899999984         11


Q ss_pred             HHHHHHH-HHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC
Q 045353          204 DHLALMM-ELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP  282 (358)
Q Consensus       204 ~~l~~i~-~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~  282 (358)
                      ..+..+. .+......                         ...       .....+...++++.+||.+||++|     
T Consensus       281 ~~~~~~~~~~~~~~~~-------------------------~~~-------~~~~~~~~~s~~~~dli~~~L~~d-----  323 (336)
T 2vuw_A          281 LWLHYLTDKMLKQMTF-------------------------KTK-------CNTPAMKQIKRKIQEFHRTMLNFS-----  323 (336)
T ss_dssp             HHHHHHHHHHHHTCCC-------------------------SSC-------CCSHHHHHHHHHHHHHHHHGGGSS-----
T ss_pred             hhhhHHHHhhhhhhcc-------------------------Ccc-------cchhhhhhcCHHHHHHHHHHhccC-----
Confidence            1111111 11100000                         000       000122356889999999999987     


Q ss_pred             CHHHHh-cCcCcC
Q 045353          283 TAAQCL-SHPWMS  294 (358)
Q Consensus       283 ta~elL-~hpwf~  294 (358)
                      |++|+| +||||+
T Consensus       324 sa~e~l~~Hp~f~  336 (336)
T 2vuw_A          324 SATDLLCQHSLFK  336 (336)
T ss_dssp             SHHHHHHHCGGGC
T ss_pred             CHHHHHhcCCCcC
Confidence            999999 999995

>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}

Probab=99.96  E-value=7e-31  Score=238.95  Aligned_cols=224  Identities=15%  Similarity=0.168  Sum_probs=167.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCccccccc----c
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQND----S   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~----~   92 (358)
                      .+|..+|+|.+... .......+.++.+....+  .+++++.+.....   ......|+||||+.||+|.+++..    .
T Consensus        52 ~~~~~vavK~~~~~-~~~~~~~~~~E~~~l~~l--~h~~iv~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~~~  128 (317)
T 2buj_A           52 HDGHFYALKRILCH-EQQDREEAQREADMHRLF--NHPNILRLVAYCLRERGAKHEAWLLLPFFKRGTLWNEIERLKDKG  128 (317)
T ss_dssp             TTCCEEEEEEEEES-SHHHHHHHHHHHHHHHTC--CCTTBCCCCEEEEEEETTEEEEEEEEECCTTCBHHHHHHHHHTTT
T ss_pred             CCCcEEEEEEEecC-CHHHHHHHHHHHHHHhhc--CCCCeeeEEEEEEeccCCCceeEEEEEeCCCCcHHHHHHHHHhcC
Confidence            56778999987553 344556677777666653  6777777665543   234578999999999999998874    4


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------------CCCCccCCC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------------FTNDIQTRQ  156 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------------~~~~~gt~~  156 (358)
                      ..+++.++..++.+++.++.++|+.+++|+    +|||++.++.+||+|||++......            .....||+.
T Consensus       129 ~~~~~~~~~~i~~qi~~~L~~LH~~~ivH~dlkp~NIl~~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~gt~~  208 (317)
T 2buj_A          129 NFLTEDQILWLLLGICRGLEAIHAKGYAHRDLKPTNILLGDEGQPVLMDLGSMNQACIHVEGSRQALTLQDWAAQRCTIS  208 (317)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCSSCEESCEEEESHHHHHHHHHHHHHHSCGG
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHhCCcccCCCCHHHEEEcCCCCEEEEecCcchhcccccccccccccccccccccCCcc
Confidence            568889999999999999999999999999    9999999999999999998764321            122357999


Q ss_pred             cchhHHHhCCC---CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          157 YRCPEVLLGSK---YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       157 Y~aPE~l~~~~---~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      |+|||++.+..   ++.++|||||||++|+|++|..||........     .+....  ...                  
T Consensus       209 y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~-----~~~~~~--~~~------------------  263 (317)
T 2buj_A          209 YRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGD-----SVALAV--QNQ------------------  263 (317)
T ss_dssp             GCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTS-----CHHHHH--HCC------------------
T ss_pred             cCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccc-----hhhHHh--hcc------------------
Confidence            99999998654   68999999999999999999999942110000     000000  000                  


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                                          .........+..+.+||.+||+.||.+|||+.+++++-
T Consensus       264 --------------------~~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L  301 (317)
T 2buj_A          264 --------------------LSIPQSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQL  301 (317)
T ss_dssp             ----------------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --------------------CCCCccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHh
Confidence                                01112234567899999999999999999999999864

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.96  E-value=1.4e-30  Score=260.79  Aligned_cols=213  Identities=13%  Similarity=0.064  Sum_probs=165.8

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCC----CCCcccccCCCCCcccccccccccC
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSP----DNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      +|..|++|.+...........+.++.+...+  +.|++++.+.......+.    ..|+||||++|++|.+++..  .++
T Consensus       105 ~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~--l~hp~iv~~~~~~~~~~~~~~~~~~lv~E~~~g~~L~~~~~~--~l~  180 (681)
T 2pzi_A          105 NGRPVVLKGLVHSGDAEAQAMAMAERQFLAE--VVHPSIVQIFNFVEHTDRHGDPVGYIVMEYVGGQSLKRSKGQ--KLP  180 (681)
T ss_dssp             TTEEEEEEESCSSCCHHHHHHHHHHHGGGGG--CCCTTBCCEEEEEEEECTTSCEEEEEEEECCCCEECC----C--CCC
T ss_pred             CCcEEEEEEeCccCCHHHHHHHHHHHHHHHh--cCCCCcCeEeeeEeecCCCCCceeEEEEEeCCCCcHHHHHhC--CCC
Confidence            5788999998876656666667777666665  467788877765443322    26999999999999998765  678


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcch
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      +.++..++.+++.++.|+|+.+++||    +|||++.+ .+||+|||+++..... ...+||+.|+|||++.+. ++.++
T Consensus       181 ~~~~~~~~~qi~~aL~~lH~~giiHrDlkp~NIll~~~-~~kl~DFG~a~~~~~~-~~~~gt~~y~aPE~~~~~-~~~~s  257 (681)
T 2pzi_A          181 VAEAIAYLLEILPALSYLHSIGLVYNDLKPENIMLTEE-QLKLIDLGAVSRINSF-GYLYGTPGFQAPEIVRTG-PTVAT  257 (681)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSS-CEEECCCTTCEETTCC-SCCCCCTTTSCTTHHHHC-SCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCeecccChHHeEEeCC-cEEEEecccchhcccC-CccCCCccccCHHHHcCC-CCCce
Confidence            89999999999999999999999999    99999885 8999999999876554 566899999999999875 48899


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|.+||.+......                 +.                                  
T Consensus       258 Di~slG~~l~~l~~g~~~~~~~~~~~~-----------------~~----------------------------------  286 (681)
T 2pzi_A          258 DIYTVGRTLAALTLDLPTRNGRYVDGL-----------------PE----------------------------------  286 (681)
T ss_dssp             HHHHHHHHHHHHHSCCCEETTEECSSC-----------------CT----------------------------------
T ss_pred             ehhhhHHHHHHHHhCCCCCcccccccc-----------------cc----------------------------------
Confidence            999999999999999988864221100                 00                                  


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                         .......++.+.+||.+||+.||.+||++.+++.|+|+.
T Consensus       287 ---~~~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~  325 (681)
T 2pzi_A          287 ---DDPVLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTG  325 (681)
T ss_dssp             ---TCHHHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHH
T ss_pred             ---cccccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHH
Confidence               000011246788999999999999999999999999875

>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}

Probab=99.96  E-value=4.3e-30  Score=233.86  Aligned_cols=217  Identities=17%  Similarity=0.183  Sum_probs=158.7

Q ss_pred             cccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhh
Q 045353           23 ASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~  100 (358)
                      ..+++|.+.... .....++++++.+...+  ..|++++........ ....|+||||++|++|.+++.... .+++..+
T Consensus        56 ~~~avk~~~~~~~~~~~~~~~~~e~~~l~~--l~h~~iv~~~~~~~~-~~~~~iv~e~~~~~~L~~~l~~~~~~~~~~~~  132 (319)
T 2y4i_B           56 GEVAIRLIDIERDNEDQLKAFKREVMAYRQ--TRHENVVLFMGACMS-PPHLAIITSLCKGRTLYSVVRDAKIVLDVNKT  132 (319)
T ss_dssp             SSEEEEECCCCSCCCCCCCCCCTTGGGGTT--CCCTTBCCCCEEEEC-SSCEEEECBCCCSEEHHHHTTSSCCCCCSHHH
T ss_pred             CeEEEEEeecCCCCHHHHHHHHHHHHHHhc--CCCCCEeEEEEEEec-CCceEEEeecccCCcHHHHHHhcCCCCCHHHH
Confidence            357777776432 33344556666655555  356777776665443 356899999999999999998654 6788999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--------CCCCCCccCCCcchhHHHhC---
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--------KQFTNDIQTRQYRCPEVLLG---  165 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--------~~~~~~~gt~~Y~aPE~l~~---  165 (358)
                      ..++.+++.++.++|+.+++|+    +|||++ ++.+||+|||++....        .......||+.|+|||++.+   
T Consensus       133 ~~i~~qi~~al~~lH~~~i~H~dlkp~NIl~~-~~~~~l~Dfg~~~~~~~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~  211 (319)
T 2y4i_B          133 RQIAQEIVKGMGYLHAKGILHKDLKSKNVFYD-NGKVVITDFGLFSISGVLQAGRREDKLRIQNGWLCHLAPEIIRQLSP  211 (319)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCCCCSTTEEEC---CCEECCCSCCC----------CCSCBCCSGGGGTSCHHHHSCBSC
T ss_pred             HHHHHHHHHHHHHHHhCCccccCCChhhEEEe-CCCEEEeecCCccccccccccccccccccCCCcccccChHHhhhccc
Confidence            9999999999999999999999    999998 6899999999986542        12334468999999999985   


Q ss_pred             ------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          166 ------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       166 ------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                            ..++.++|||||||++|+|++|..||....      .......+..  +..+.                     
T Consensus       212 ~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~------~~~~~~~~~~--~~~~~---------------------  262 (319)
T 2y4i_B          212 DTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQP------AEAIIWQMGT--GMKPN---------------------  262 (319)
T ss_dssp             C--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCC------HHHHHHHHHT--TCCCC---------------------
T ss_pred             cccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCC------HHHHHHHhcc--CCCCC---------------------
Confidence                  347899999999999999999999997543      2222222111  10000                     


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                       ......+..+.+||.+||..||.+|||+.++++
T Consensus       263 -----------------~~~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~  295 (319)
T 2y4i_B          263 -----------------LSQIGMGKEISDILLFCWAFEQEERPTFTKLMD  295 (319)
T ss_dssp             -----------------CCCSSCCTTHHHHHHHHHCSSTTTSCCHHHHHH
T ss_pred             -----------------CCcCCCCHHHHHHHHHHhcCChhhCcCHHHHHH
Confidence                             001123567889999999999999999999986

>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A

Probab=99.93  E-value=9.2e-27  Score=208.90  Aligned_cols=200  Identities=9%  Similarity=-0.013  Sum_probs=148.0

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..||+|++......  ....++.++.+...+  ..|++++.+.+.... .+..|+||||++|++|.+++...  ...
T Consensus        54 ~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~--l~hp~iv~~~~~~~~-~~~~~lv~e~~~g~~L~~~l~~~--~~~  128 (286)
T 3uqc_A           54 ALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSR--IDKPGVARVLDVVHT-RAGGLVVAEWIRGGSLQEVADTS--PSP  128 (286)
T ss_dssp             TTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHT--CCCTTBCCEEEEEEE-TTEEEEEEECCCEEEHHHHHTTC--CCH
T ss_pred             CCCceEEEEEECcccccCHHHHHHHHHHHHHHhc--CCCCCcceeeEEEEE-CCcEEEEEEecCCCCHHHHHhcC--CCh
Confidence            34788999999887664  344667777776655  467778877766543 35689999999999999998653  355


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++..++.+++.++.|+|+.+++|+    +|||++.++.+||+++|                 |++       +++.++|
T Consensus       129 ~~~~~i~~ql~~aL~~lH~~givH~Dikp~NIll~~~g~~kl~~~~-----------------~~~-------~~~~~~D  184 (286)
T 3uqc_A          129 VGAIRAMQSLAAAADAAHRAGVALSIDHPSRVRVSIDGDVVLAYPA-----------------TMP-------DANPQDD  184 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCSGGGEEEETTSCEEECSCC-----------------CCT-------TCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCccCCCCcccEEEcCCCCEEEEecc-----------------ccC-------CCCchhH
Confidence            5788899999999999999999998    99999999999998554                 333       3789999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|+.||.+.+......                           ...      ...        .....
T Consensus       185 i~slG~il~elltg~~Pf~~~~~~~~~~---------------------------~~~------~~~--------~~~~~  223 (286)
T 3uqc_A          185 IRGIGASLYALLVNRWPLPEAGVRSGLA---------------------------PAE------RDT--------AGQPI  223 (286)
T ss_dssp             HHHHHHHHHHHHHSEECSCCCSBCCCSE---------------------------ECC------BCT--------TSCBC
T ss_pred             HHHHHHHHHHHHHCCCCCCcCCcchhhH---------------------------HHH------HHh--------ccCCC
Confidence            9999999999999999997654211000                           000      000        00000


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                      ........+++.+.+||.+||+.||.+| |+.|+++.
T Consensus       224 ~~~~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~  259 (286)
T 3uqc_A          224 EPADIDRDIPFQISAVAARSVQGDGGIR-SASTLLNL  259 (286)
T ss_dssp             CHHHHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHH
T ss_pred             ChhhcccCCCHHHHHHHHHHcccCCccC-CHHHHHHH
Confidence            0011233457789999999999999999 99999863

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.92  E-value=2e-27  Score=232.27  Aligned_cols=165  Identities=14%  Similarity=0.059  Sum_probs=115.2

Q ss_pred             cCcccccccccCcc---------chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           21 SSASKENKSLYGDL---------TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        21 ~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .|..+++|++..+.         ++..++.++++.+...+. ..+.+++.+....+ .+..+|||||||+||+|.+++..
T Consensus       258 fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~-~~~~~i~~~~~~~e-d~~~~yLVMEyv~G~~L~d~i~~  335 (569)
T 4azs_A          258 FGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQP-PAGFDAPAVLAHGE-NAQSGWLVMEKLPGRLLSDMLAA  335 (569)
T ss_dssp             ECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSC-CTTCCCCCEEEEEE-CSSEEEEEEECCCSEEHHHHHHT
T ss_pred             ccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhc-CCCCCeeEEEEEEE-ECCEEEEEEecCCCCcHHHHHHh
Confidence            46667778776542         233344566666666654 25667777766554 46789999999999999999988


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~  164 (358)
                      ...+++.   .++.|++.|+.|+|+.||+||    +|||++.+|.+||+|||+|+.....   .++.+||+.|||||++.
T Consensus       336 ~~~l~~~---~I~~QIl~AL~ylH~~GIIHRDIKPeNILL~~dg~vKL~DFGlAr~~~~~~~~~~t~vGTp~YmAPE~l~  412 (569)
T 4azs_A          336 GEEIDRE---KILGSLLRSLAALEKQGFWHDDVRPWNVMVDARQHARLIDFGSIVTTPQDCSWPTNLVQSFFVFVNELFA  412 (569)
T ss_dssp             TCCCCHH---HHHHHHHHHHHHHHHTTCEESCCCGGGEEECTTSCEEECCCTTEESCC---CCSHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHH---HHHHHHHHHHHHHHHCCceeccCchHhEEECCCCCEEEeecccCeeCCCCCccccCceechhhccHHHhC
Confidence            7766554   578999999999999999999    9999999999999999999876533   33458999999999998


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCccc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLF  191 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf  191 (358)
                      +. +..++|+||+|++++.+.++..+|
T Consensus       413 g~-~~~~~d~~s~g~~~~~l~~~~~~~  438 (569)
T 4azs_A          413 EN-KSWNGFWRSAPVHPFNLPQPWSNW  438 (569)
T ss_dssp             -----------------CCCCTTHHHH
T ss_pred             CC-CCCcccccccccchhhhccccchh
Confidence            74 667899999999999988775554

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=99.70  E-value=9.1e-19  Score=170.07  Aligned_cols=156  Identities=11%  Similarity=0.028  Sum_probs=120.1

Q ss_pred             cCcccccccccCccch-------hhhHHhhHHHHHhhhhccCCCccc--cccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           21 SSASKENKSLYGDLTK-------NQKKKVKKKAKKAAQGCAGTEAFD--ESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+..+++|........       ..++++.++.+...++  .|++++  .....   .....|+|||||+||+|.+++..
T Consensus       358 ~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l--~h~nIv~~~~~~~---~~~~~~lVmE~~~ggsL~~~l~~  432 (540)
T 3en9_A          358 LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALV--KDFGIPAPYIFDV---DLDNKRIMMSYINGKLAKDVIED  432 (540)
T ss_dssp             SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHG--GGGTCCCCCEEEE---ETTTTEEEEECCCSEEHHHHSTT
T ss_pred             CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhc--CCCCcCceEEEEE---eCCccEEEEECCCCCCHHHHHHH
Confidence            4556666654443221       1245567777776664  566666  33333   34567999999999999999876


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----------CCCCccCCCc
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----------FTNDIQTRQY  157 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y  157 (358)
                              +..++.|++.++.|+|+.+++||    +|||++.  .+||+|||+|+.....          ....+||+.|
T Consensus       433 --------~~~i~~qi~~aL~~LH~~gIiHrDiKp~NILl~~--~~kL~DFGla~~~~~~~~~~~~~~~~~~~~~GT~~y  502 (540)
T 3en9_A          433 --------NLDIAYKIGEIVGKLHKNDVIHNDLTTSNFIFDK--DLYIIDFGLGKISNLDEDKAVDLIVFKKAVLSTHHE  502 (540)
T ss_dssp             --------CTHHHHHHHHHHHHHHHTTEECTTCCTTSEEESS--SEEECCCTTCEECCCHHHHHHHHHHHHHHHHHHCGG
T ss_pred             --------HHHHHHHHHHHHHHHHHCcCccCCCCHHHEEECC--eEEEEECccCEECCCccccccchhhhhhhhcCCCCc
Confidence                    56899999999999999999999    8999998  9999999999887542          1345899999


Q ss_pred             chhHHHhC--CCCCcchhhhhhhHHHHhhhcCCccc
Q 045353          158 RCPEVLLG--SKYSTSADLWSFACICFELATGDVLF  191 (358)
Q Consensus       158 ~aPE~l~~--~~~~~~~DiwSlGvil~ell~g~~pf  191 (358)
                      ||||++.+  ..|+..+|+||..+-..+.+.++.+|
T Consensus       503 ~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY  538 (540)
T 3en9_A          503 KFDEIWERFLEGYKSVYDRWEIILELMKDVERRARY  538 (540)
T ss_dssp             GHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCC
T ss_pred             CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence            99999987  56888899999999888887776655

>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*

Probab=99.48  E-value=4.8e-15  Score=132.15  Aligned_cols=134  Identities=13%  Similarity=0.038  Sum_probs=95.7

Q ss_pred             ccccCcccccccccCccch-----------------hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccC
Q 045353           18 VTESSASKENKSLYGDLTK-----------------NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIP   80 (358)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~   80 (358)
                      ...+|..+|+|.+...-..                 ..+.++.++......+.  +..+....     ..+..|+|||||
T Consensus       110 ~~~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l~--~~~v~~~~-----~~~~~~lvmE~~  182 (282)
T 1zar_A          110 YSEKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKLQ--GLAVPKVY-----AWEGNAVLMELI  182 (282)
T ss_dssp             EETTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHTT--TSSSCCEE-----EEETTEEEEECC
T ss_pred             EeCCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhcc--CCCcCeEE-----eccceEEEEEec
Confidence            3456889999998653321                 23556677776666654  23222222     235679999999


Q ss_pred             CCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCC
Q 045353           81 NGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ  156 (358)
Q Consensus        81 ~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~  156 (358)
                      +||+|.+ +.      ......++.+++.++.++|+.+++|+    +|||++ ++.+||+|||+|+          .+..
T Consensus       183 ~g~~L~~-l~------~~~~~~i~~qi~~~l~~lH~~giiHrDlkp~NILl~-~~~vkl~DFG~a~----------~~~~  244 (282)
T 1zar_A          183 DAKELYR-VR------VENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVS-EEGIWIIDFPQSV----------EVGE  244 (282)
T ss_dssp             CCEEGGG-CC------CSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEE-TTEEEECCCTTCE----------ETTS
T ss_pred             CCCcHHH-cc------hhhHHHHHHHHHHHHHHHHHCCCEeCCCCHHHEEEE-CCcEEEEECCCCe----------ECCC
Confidence            9999998 32      13455799999999999999999999    999999 9999999999985          3456


Q ss_pred             cchhHHHhC----------CCCCcchhhhh
Q 045353          157 YRCPEVLLG----------SKYSTSADLWS  176 (358)
Q Consensus       157 Y~aPE~l~~----------~~~~~~~DiwS  176 (358)
                      |+|||++..          ..|+..+|+|.
T Consensus       245 ~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~  274 (282)
T 1zar_A          245 EGWREILERDVRNIITYFSRTYRTEKDINS  274 (282)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence            899999864          23455556654

>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*

Probab=98.90  E-value=3.1e-10  Score=99.57  Aligned_cols=69  Identities=13%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             CCCCcccccCCC-C----CcccccccccccChhhhhHHHHhhhhcccccc-CCCCCCc----ccccccCCCcEEEEecCC
Q 045353           71 PDNFSVDTIPNG-V----SVEERQNDSVVNNESSRDNEVKNTSQGVKGHR-RPSRATR----KNLLAAVDVQCKLVDFGN  140 (358)
Q Consensus        71 ~~~~iv~e~~~g-g----~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h-~~~~~hr----~NILl~~~~~vkL~DFG~  140 (358)
                      ...++||||+.+ |    +|.++...   ..+..+..++.+++.++.++| ..+++|+    +|||++.  .++|+|||+
T Consensus       141 ~~~~lVmE~~g~~g~~~~~L~~~~~~---~~~~~~~~i~~qi~~~l~~lH~~~givHrDlkp~NILl~~--~~~liDFG~  215 (258)
T 1zth_A          141 MKNVLLMEFIGEDELPAPTLVELGRE---LKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID--KVYFIDMGQ  215 (258)
T ss_dssp             ETTEEEEECCEETTEECCBHHHHGGG---GGGSCHHHHHHHHHHHHHHHHHTSCEECSSCSTTSEEESS--SEEECCCTT
T ss_pred             CCCEEEEEecCCCCCccccHHHHhhc---cChHHHHHHHHHHHHHHHHHHHHCCEEeCCCCHHHEEEcC--cEEEEECcc
Confidence            367899999942 4    45544322   235577889999999999999 9999998    9999998  899999999


Q ss_pred             ceec
Q 045353          141 ACWT  144 (358)
Q Consensus       141 a~~~  144 (358)
                      |...
T Consensus       216 a~~~  219 (258)
T 1zth_A          216 AVTL  219 (258)
T ss_dssp             CEET
T ss_pred             cccC
Confidence            9654

>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A

Probab=98.53  E-value=1.1e-08  Score=94.17  Aligned_cols=67  Identities=6%  Similarity=-0.006  Sum_probs=55.0

Q ss_pred             CCCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----------cEEEEe
Q 045353           72 DNFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----------QCKLVD  137 (358)
Q Consensus        72 ~~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----------~vkL~D  137 (358)
                      ..+|||||++|++|..+...      .....++.+++.++.++|..|++||    .|||+++++          .+.|+|
T Consensus       185 ~~~LVME~i~G~~L~~l~~~------~~~~~l~~qll~~l~~lH~~gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID  258 (397)
T 4gyi_A          185 RHTIVMSLVDALPMRQVSSV------PDPASLYADLIALILRLAKHGLIHGDFNEFNILIREEKDAEDPSSITLTPIIIX  258 (397)
T ss_dssp             TTEEEEECCSCEEGGGCCCC------SCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEEEEECSSCTTSEEEEEEECC
T ss_pred             CceEEEEecCCccHhhhccc------HHHHHHHHHHHHHHHHHHHCCCcCCCCCHHHEEEeCCCCcccccccccceEEEE
Confidence            44799999999999876532      3456788999999999999999999    899998877          389999


Q ss_pred             cCCceec
Q 045353          138 FGNACWT  144 (358)
Q Consensus       138 FG~a~~~  144 (358)
                      |+-+...
T Consensus       259 ~~Q~V~~  265 (397)
T 4gyi_A          259 FPQMVSM  265 (397)
T ss_dssp             CTTCEET
T ss_pred             eCCcccC
Confidence            9977543

>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*

Probab=97.45  E-value=2.1e-05  Score=68.38  Aligned_cols=66  Identities=8%  Similarity=-0.106  Sum_probs=38.9

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccc
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQ   89 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~   89 (358)
                      .|..+.+|....... ....+++++++....+.. +.++..+..... ..+..|+||||++|.+|.+..
T Consensus        36 ~~~~~vlK~~~~~~~-~~~~~~~~E~~~l~~l~~-~~~vP~v~~~~~-~~~~~~lv~e~i~G~~l~~~~  101 (263)
T 3tm0_A           36 ENENLYLKMTDSRYK-GTTYDVEREKDMMLWLEG-KLPVPKVLHFER-HDGWSNLLMSEADGVLCSEEY  101 (263)
T ss_dssp             SSCEEEEEEECGGGT-TSTTCHHHHHHHHHHHTT-TSCCCCEEEEEE-ETTEEEEEEECCSSEEHHHHC
T ss_pred             CCCcEEEEeCCcccC-CCHHHHHHHHHHHHHHhc-CCCCCeEEEEEe-cCCceEEEEEecCCeehhhcc
Confidence            356778888775432 223456777766655432 222222222221 235679999999999998753

>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}

Probab=97.20  E-value=0.00022  Score=65.10  Aligned_cols=23  Identities=13%  Similarity=0.115  Sum_probs=18.2

Q ss_pred             CcccccccCCCc--EEEEecCCcee
Q 045353          121 TRKNLLAAVDVQ--CKLVDFGNACW  143 (358)
Q Consensus       121 hr~NILl~~~~~--vkL~DFG~a~~  143 (358)
                      |+.|||++.++.  +.|+||+.|..
T Consensus       224 ~~~Nil~~~~~~~v~~viDwe~a~~  248 (359)
T 3dxp_A          224 RLDNLMFHPTEPRVLAVLDWELSTL  248 (359)
T ss_dssp             SGGGEEECSSSSCEEEECCCTTCEE
T ss_pred             CCCcEEEeCCCCcEEEEECcccccc
Confidence            338999997753  69999999864

>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A

Probab=97.19  E-value=9.3e-05  Score=65.91  Aligned_cols=71  Identities=20%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             CCcccccccC--CCcEEEEecCCceecCCCCCCCccCCCc---chhHHHhC--CCC------------CcchhhhhhhHH
Q 045353          120 ATRKNLLAAV--DVQCKLVDFGNACWTHKQFTNDIQTRQY---RCPEVLLG--SKY------------STSADLWSFACI  180 (358)
Q Consensus       120 ~hr~NILl~~--~~~vkL~DFG~a~~~~~~~~~~~gt~~Y---~aPE~l~~--~~~------------~~~~DiwSlGvi  180 (358)
                      .|+.|||++.  ...+.|+||+.+...+... .......+   ..|+....  ..|            ..-.+.|+++.+
T Consensus       198 ~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~-Dl~~~~~~~~~~~~~~~~~~l~~Y~~~~~~~~~~r~~~~~~~~~l~~~  276 (304)
T 3sg8_A          198 FSSDHILFDTEKNTICGIIDFGDAAISDPDN-DFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKI  276 (304)
T ss_dssp             CCGGGEEEETTTTEEEEECCCTTCEEECTTH-HHHTTCCTTTSCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccEEEeCCCCCEEEEEeCCCCccCChHH-HHHHHHhhccccCHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            3558999998  4567999999987644320 00000011   22322111  001            122589999999


Q ss_pred             HHhhhcCCccc
Q 045353          181 CFELATGDVLF  191 (358)
Q Consensus       181 l~ell~g~~pf  191 (358)
                      +|.+.+|..+|
T Consensus       277 ~~~~~~g~~~~  287 (304)
T 3sg8_A          277 IYGKEYGYMDW  287 (304)
T ss_dssp             HHHHHTTCHHH
T ss_pred             HHHHHcCCHHH
Confidence            99999998877

>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6

Probab=97.15  E-value=0.00014  Score=62.75  Aligned_cols=23  Identities=17%  Similarity=0.199  Sum_probs=18.4

Q ss_pred             CCcccccccCCCcEEEEecCCce
Q 045353          120 ATRKNLLAAVDVQCKLVDFGNAC  142 (358)
Q Consensus       120 ~hr~NILl~~~~~vkL~DFG~a~  142 (358)
                      .|+.|||+++++.+.|+|||.|.
T Consensus       191 l~~~Nil~~~~~~~~liD~~~a~  213 (264)
T 1nd4_A          191 ACLPNIMVENGRFSGFIDCGRLG  213 (264)
T ss_dssp             CCGGGEEEETTEEEEECCCTTCE
T ss_pred             CCCCcEEEECCcEEEEEcchhcc
Confidence            35589999877667799999874

>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A

Probab=96.40  E-value=0.003  Score=52.64  Aligned_cols=92  Identities=12%  Similarity=-0.011  Sum_probs=58.9

Q ss_pred             Cccccccc-ccccChhhhhHHHHhhhhccccc-----cCCCCCCcccccccCCCcEEEEecCCceecCCCCCCCccCCCc
Q 045353           84 SVEERQND-SVVNNESSRDNEVKNTSQGVKGH-----RRPSRATRKNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQY  157 (358)
Q Consensus        84 ~L~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-----h~~~~~hr~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y  157 (358)
                      ||.+.+.. ...+++.++..++.|....+.-+     +...++.+..|++..+|.|-+.+ +.+.         .....+
T Consensus        34 SL~eIL~~~~~PlsEEqaWALc~Qc~~~L~~~~~~~~~~~~i~~~~~i~l~~dG~V~f~~-~~s~---------~~~~~~  103 (229)
T 2yle_A           34 SLEEILRLYNQPINEEQAWAVCYQCCGSLRAAARRRQPRHRVRSAAQIRVWRDGAVTLAP-AADD---------AGEPPP  103 (229)
T ss_dssp             EHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSGGGEEEETTSCEEECC-C------------------
T ss_pred             cHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhhcccCCceecCCcceEEecCCceeccc-cccc---------ccccCC
Confidence            45555553 45688999999999988887665     33445566889999999887764 2211         122345


Q ss_pred             chhHHHhCCCCCcchhhhhhhHHHHhhhc
Q 045353          158 RCPEVLLGSKYSTSADLWSFACICFELAT  186 (358)
Q Consensus       158 ~aPE~l~~~~~~~~~DiwSlGvil~ell~  186 (358)
                      .+||... ...+.+.=|||||+++|..+-
T Consensus       104 ~~pe~~~-~~~te~~~IysLG~tLY~ALD  131 (229)
T 2yle_A          104 VAGKLGY-SQCMETEVIESLGIIIYKALD  131 (229)
T ss_dssp             ---CCSS-SSSCHHHHHHHHHHHHHHHHT
T ss_pred             CChhhcc-ccchHHHHHHHHHHHHHHHhh
Confidence            6777653 234677889999999999875

>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*

Probab=91.07  E-value=0.11  Score=45.95  Aligned_cols=27  Identities=19%  Similarity=0.450  Sum_probs=19.8

Q ss_pred             CCCcccccccC---CCcE-EEEecCCceecC
Q 045353          119 RATRKNLLAAV---DVQC-KLVDFGNACWTH  145 (358)
Q Consensus       119 ~~hr~NILl~~---~~~v-kL~DFG~a~~~~  145 (358)
                      -.|+.|||++.   ++.+ .|+||+.+...+
T Consensus       196 D~~~~N~l~~~~~~~~~~~~~iD~~~a~~gd  226 (306)
T 3tdw_A          196 DLSPDHFLTNLNSRQTPLTGIIDFGDAAISD  226 (306)
T ss_dssp             CCSGGGEEECTTCSSCCEEEECCCTTCEEEC
T ss_pred             CCCcccEEEecCCCCCceEEEEehhhcCCCC
Confidence            34558999987   4554 899999886543

>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*

Probab=86.85  E-value=0.31  Score=43.70  Aligned_cols=24  Identities=17%  Similarity=0.075  Sum_probs=18.4

Q ss_pred             CCcccccccCCCcEEEEecCCcee
Q 045353          120 ATRKNLLAAVDVQCKLVDFGNACW  143 (358)
Q Consensus       120 ~hr~NILl~~~~~vkL~DFG~a~~  143 (358)
                      .|+.|||++++..+.|+||+.|..
T Consensus       229 l~~~Nil~~~~~~~~vIDwe~a~~  252 (357)
T 3ats_A          229 ARVGNVLYRDFQPVAVLDWEMVAL  252 (357)
T ss_dssp             CSGGGEEEETTEEEEECCGGGCEE
T ss_pred             CCCCeEEEeCCcEEEEEccccccc
Confidence            344899999655579999998753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	358
d1q8ya_	362	d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces	1e-42
d1s9ja_	322	d.144.1.7 (A:) Dual specificity mitogen-activated	9e-26
d2b1pa1	355	d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3	9e-25
d3blha1	318	d.144.1.7 (A:8-325) Cell division protein kinase 9	3e-22
d1ua2a_	299	d.144.1.7 (A:) Cell division protein kinase 7, CDK	4e-22
d1blxa_	305	d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (H	4e-21
d2gfsa1	348	d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sa	7e-20
d1ob3a_	286	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmod	7e-20
d3bqca1	328	d.144.1.7 (A:3-330) Protein kinase CK2, alpha subu	1e-19
d1unla_	292	d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (H	2e-19
d2j4za1	263	d.144.1.7 (A:126-388) Aurora-related kinase 1 (aur	2e-19
d1pmea_	345	d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapien	6e-19
d1q5ka_	350	d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gs	1e-18
d1gz8a_	298	d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (H	1e-18
d1cm8a_	346	d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo s	4e-18
d1t4ha_	270	d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sa	2e-17
d1yhwa1	293	d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [	6e-17
d2java1	269	d.144.1.7 (A:3-271) Serine/threonine-protein kinas	3e-16
d2jfla1	288	d.144.1.7 (A:21-308) STE20-like serine/threonine-p	4e-16
d1koaa2	350	d.144.1.7 (A:5915-6264) Twitchin, kinase domain {C	4e-16
d2ozaa1	335	d.144.1.7 (A:51-385) MAP kinase activated protein	4e-16
d1jksa_	293	d.144.1.7 (A:) Death-associated protein kinase, Da	3e-15
d1a06a_	307	d.144.1.7 (A:) Calmodulin-dependent protein kinase	1e-14
d1u5ra_	309	d.144.1.7 (A:) Serine/threonine protein kinase TAO	1e-14
d1xwsa_	273	d.144.1.7 (A:) Proto-oncogene serine/threonine-pro	1e-14
d1tkia_	321	d.144.1.7 (A:) Titin, kinase domain {Human (Homo s	2e-14
d1koba_	352	d.144.1.7 (A:) Twitchin, kinase domain {California	2e-14
d1uu3a_	288	d.144.1.7 (A:) 3-phosphoinositide dependent protei	3e-14
d1nvra_	271	d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {	8e-14
d1xjda_	320	d.144.1.7 (A:) Protein kinase C, theta type {Human	9e-14
d1phka_	277	d.144.1.7 (A:) gamma-subunit of glycogen phosphory	1e-13
d1fota_	316	d.144.1.7 (A:) cAMP-dependent PK, catalytic subuni	2e-13
d1uwha_	276	d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens)	2e-12
d1byga_	262	d.144.1.7 (A:) Carboxyl-terminal src kinase (csk)	4e-12
d1o6la_	337	d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sap	4e-11
d1vjya_	303	d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human	7e-11
d1omwa3	364	d.144.1.7 (A:186-549) G-protein coupled receptor k	1e-10
d1rdqe_	350	d.144.1.7 (E:) cAMP-dependent PK, catalytic subuni	2e-10
d1fmka3	285	d.144.1.7 (A:249-533) c-src tyrosine kinase {Human	4e-10
d1ckia_	299	d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus n	1e-09
d1csna_	293	d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast	2e-09
d1r0pa_	311	d.144.1.7 (A:) Hepatocyte growth factor receptor,	3e-09
d1k2pa_	258	d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Hum	5e-09
d1o6ya_	277	d.144.1.7 (A:) Mycobacterial protein kinase PknB,	5e-09
d1sm2a_	263	d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Hu	1e-08
d1vzoa_	322	d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5	1e-08
d1xkka_	317	d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-	2e-08
d1lufa_	301	d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus n	3e-08
d1fvra_	309	d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [	3e-08
d1rjba_	325	d.144.1.7 (A:) Fl cytokine receptor {Human (Homo s	3e-08
d1xbba_	277	d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human	9e-08
d1u46a_	273	d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Hum	4e-07
d1opja_	287	d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mou	1e-06
d1ywna1	299	d.144.1.7 (A:818-1166) Vascular endothelial growth	2e-06
d1qpca_	272	d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Hom	2e-06
d1p4oa_	308	d.144.1.7 (A:) Insulin-like growth factor 1 recept	2e-06
d1mqba_	283	d.144.1.7 (A:) epha2 receptor tyrosine kinase {Hum	2e-06
d1u59a_	285	d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Hum	3e-06
d1jpaa_	299	d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mou	3e-06
d1fgka_	299	d.144.1.7 (A:) Fibroblast growth factor receptor 1	6e-06
d1mp8a_	273	d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Huma	2e-05
d1t46a_	311	d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens	1e-04

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 362

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  149 bits (377), Expect = 1e-42
 Identities = 87/189 (46%), Positives = 123/189 (65%)

Query: 130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGDV 189
            +Q K+ D GNACW  + +TN IQTR+YR PEVLLG+ +   AD+WS AC+ FEL TGD 
Sbjct: 168 LIQIKIADLGNACWYDEHYTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDF 227

Query: 190 LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN 249
           LF+P  G +Y KD+DH+A ++ELLG +P  +   G+Y+R FFN  G LR+I +L+FWP+ 
Sbjct: 228 LFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLE 287

Query: 250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGEP 309
            VL EKY F++ +AK+++DFL P+L   P KR  A   ++HPW+     + E  +   E 
Sbjct: 288 DVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLGMEEIRVPDREL 347

Query: 310 RETEGSIPE 318
             +   IP 
Sbjct: 348 YGSGSDIPG 356

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  103 bits (257), Expect = 9e-26
 Identities = 39/172 (22%), Positives = 58/172 (33%), Gaps = 7/172 (4%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTND-IQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
           N+L     + KL DFG +        N  + TR Y  PE L G+ YS  +D+WS      
Sbjct: 135 NILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLV 194

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E+A G     P      D  E  L    ++ G             R   +   D R    
Sbjct: 195 EMAVGRYPIPPP-----DAKELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMA 249

Query: 243 LRFWPMNKVLVEKYDFNERD-AKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           +       V            + +  DF+   L   P +R    Q + H ++
Sbjct: 250 IFELLDYIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFI 301

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (251), Expect = 9e-25
 Identities = 47/203 (23%), Positives = 78/203 (38%), Gaps = 10/203 (4%)

Query: 130 DVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           D   K++DFG A    T    T  + TR YR PEV+LG  Y  + D+WS  CI  E+   
Sbjct: 155 DCTLKILDFGLARTAGTSFMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRH 214

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
            +LF            D    ++E LG    +     + +   +  +             
Sbjct: 215 KILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLF 268

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAG 307
            + +     + N+  A    D L  +L   P KR +    L HP+++      E      
Sbjct: 269 PDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWYDPAEVEAPP- 327

Query: 308 EPRETEGSIPERKRREQEEREAM 330
            P+  +  + ER+   +E +E +
Sbjct: 328 -PQIYDKQLDEREHTIEEWKELI 349

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]} Length = 318

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.8 bits (232), Expect = 3e-22
 Identities = 42/183 (22%), Positives = 70/183 (38%), Gaps = 24/183 (13%)

Query: 123 KNLLAAVDVQCKLVDFGNA-------CWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADL 174
            N+L   D   KL DFG A            ++TN + T  YR PE+LLG + Y    DL
Sbjct: 146 ANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRPPELLLGERDYGPPIDL 205

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           W   CI  E+ T   +   ++      ++  LAL+ +L G +  ++          +   
Sbjct: 206 WGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITPEV----------WPNV 249

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            +     +L      K  V+             D +  +L   P +R  +   L+H +  
Sbjct: 250 DNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFW 309

Query: 295 AGP 297
           + P
Sbjct: 310 SDP 312

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.6 bits (229), Expect = 4e-22
 Identities = 45/185 (24%), Positives = 63/185 (34%), Gaps = 24/185 (12%)

Query: 124 NLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           NLL   +   KL DFG A      ++ +T+ + TR YR PE+L G++ Y    D+W+  C
Sbjct: 130 NLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGC 189

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  EL          S      D D L  + E LG    +         D+         
Sbjct: 190 ILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVTFKSFPGI 243

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
                F                   D+ D +  +  F P  R TA Q L   + S  P  
Sbjct: 244 PLHHIFSAAGD--------------DLLDLIQGLFLFNPCARITATQALKMKYFSNRPGP 289

Query: 300 REPSM 304
                
Sbjct: 290 TPGCQ 294

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]} Length = 305

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.9 bits (222), Expect = 4e-21
 Identities = 50/172 (29%), Positives = 67/172 (38%), Gaps = 23/172 (13%)

Query: 124 NLLAAVDVQCKLVDFG--NACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N+L     Q KL DFG           T+ + T  YR PEVLL S Y+T  DLWS  CI 
Sbjct: 146 NILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIF 205

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
            E+     LF   S      D D L  +++++G+                      R + 
Sbjct: 206 AEMFRRKPLFRGSS------DVDQLGKILDVIGL---------------PGEEDWPRDVA 244

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
             R    +K       F     +   D L+  L F P KR +A   LSHP+ 
Sbjct: 245 LPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYF 296

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (215), Expect = 7e-20
 Identities = 53/211 (25%), Positives = 82/211 (38%), Gaps = 19/211 (9%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACIC 181
            NL    D + K++DFG A  T  + T  + TR YR PE++L    Y+ + D+WS  CI 
Sbjct: 150 SNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIM 209

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
            EL TG  LF            D L L++ L+G    ++ L    S    N    L  + 
Sbjct: 210 AELLTGRTLFPGTD------HIDQLKLILRLVGTPGAEL-LKKISSESARNYIQSLTQMP 262

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL-R 300
           ++ F  +                   D L  +L    +KR TAAQ L+H + +       
Sbjct: 263 KMNFANVFIGANP----------LAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHDPDD 312

Query: 301 EPSMAAGEPRETEGSIPERKRREQEEREAME 331
           EP     +       +   + +     E + 
Sbjct: 313 EPVADPYDQSFESRDLLIDEWKSLTYDEVIS 343

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]} Length = 286

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

 Score = 86.1 bits (212), Expect = 7e-20
 Identities = 45/168 (26%), Positives = 67/168 (39%), Gaps = 23/168 (13%)

Query: 130 DVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELA 185
           + + K+ DFG A       +++T++I T  YR P+VL+GS KYST+ D+WS  CI  E+ 
Sbjct: 136 EGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMV 195

Query: 186 TGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF 245
            G  LF   S      + D L  +  +LG    K          +         +    F
Sbjct: 196 NGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYEPLPWESF 249

Query: 246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                             +   D L  +L   P +R TA Q L H + 
Sbjct: 250 LK-------------GLDESGIDLLSKMLKLDPNQRITAKQALEHAYF 284

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]} Length = 328

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

 Score = 86.4 bits (213), Expect = 1e-19
 Identities = 33/172 (19%), Positives = 72/172 (41%), Gaps = 13/172 (7%)

Query: 124 NLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFACI 180
            ++     + +L+D+G A + H  +++   + +R ++ PE+L+  + Y  S D+WS  C+
Sbjct: 160 VMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCM 219

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
              +      F          + D L  + ++LG          +Y+ +   R  D+   
Sbjct: 220 LASMIFRKEPFFHG-----HDNYDQLVRIAKVLGT-EDLYDYIDKYNIELDPRFNDILGR 273

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
              + W        ++  +     +  DFL  +L +  + R TA + + HP+
Sbjct: 274 HSRKRWERFVHSENQHLVSP----EALDFLDKLLRYDHQSRLTAREAMEHPY 321

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]} Length = 292

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.0 bits (209), Expect = 2e-19
 Identities = 48/175 (27%), Positives = 72/175 (41%), Gaps = 22/175 (12%)

Query: 124 NLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSK-YSTSADLWSFAC 179
           NLL   + + KL +FG A       + ++ ++ T  YR P+VL G+K YSTS D+WS  C
Sbjct: 131 NLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGC 190

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  ELA       P      +  +D L  +  LLG              + +     L  
Sbjct: 191 IFAELANAGRPLFPG-----NDVDDQLKRIFRLLGTPTE----------EQWPSMTKLPD 235

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
            +    +P    LV          +D    L  +L   P +R +A + L HP+ S
Sbjct: 236 YKPYPMYPATTSLVNVVPKLNATGRD---LLQNLLKCNPVQRISAEEALQHPYFS 287

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (208), Expect = 2e-19
 Identities = 32/173 (18%), Positives = 56/173 (32%), Gaps = 49/173 (28%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACICF 182
           NLL     + K+ DFG +          +  T  Y  PE++ G  +    DLWS   +C+
Sbjct: 136 NLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCY 195

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
           E   G   F+ ++               E                               
Sbjct: 196 EFLVGKPPFEANT-------------YQETY----------------------------- 213

Query: 243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
                  ++   ++ F +   +   D +  +L   P +RP   + L HPW++A
Sbjct: 214 ------KRISRVEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA 260

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.5 bits (208), Expect = 6e-19
 Identities = 51/215 (23%), Positives = 80/215 (37%), Gaps = 27/215 (12%)

Query: 123 KNLLAAVDVQCKLVDFGNAC------WTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLW 175
            NLL       K+ DFG A             T  + TR YR PE++L S  Y+ S D+W
Sbjct: 138 SNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIW 197

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S  CI  E+ +   +F            D L  ++ +LG   +          +  N   
Sbjct: 198 SVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQ----------EDLNCII 241

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA 295
           +L+    L   P    +     F   D     D L  +L F P KR    Q L+HP++  
Sbjct: 242 NLKARNYLLSLPHKNKVPWNRLFPNAD-SKALDLLDKMLTFNPHKRIEVEQALAHPYLE- 299

Query: 296 GPQLREPSMAAGEPRETEGSIPERKRREQEEREAM 330
             Q  +PS         +  +      +++ +E +
Sbjct: 300 --QYYDPSDEPIAEAPFKFDMELDDLPKEKLKELI 332

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.1 bits (207), Expect = 1e-18
 Identities = 42/176 (23%), Positives = 71/176 (40%), Gaps = 25/176 (14%)

Query: 132 QCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGD 188
             KL DFG+A    +     + I +R YR PE++ G+  Y++S D+WS  C+  EL  G 
Sbjct: 161 VLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQ 220

Query: 189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM 248
            +F   S        D L  ++++LG   R+       +   F       H     F P 
Sbjct: 221 PIFPGDS------GVDQLVEIIKVLGTPTREQIREMNPNYTEFKFPQIKAHPWTKVFRP- 273

Query: 249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSM 304
                       R   +       +L++ P  R T  +  +H +     +LR+P++
Sbjct: 274 ------------RTPPEAIALCSRLLEYTPTARLTPLEACAHSFFD---ELRDPNV 314

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]} Length = 298

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (204), Expect = 1e-18
 Identities = 50/183 (27%), Positives = 73/183 (39%), Gaps = 26/183 (14%)

Query: 124 NLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLGSKY-STSADLWSFAC 179
           NLL   +   KL DFG A       + +T+++ T  YR PE+LLG KY ST+ D+WS  C
Sbjct: 132 NLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYYSTAVDIWSLGC 191

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           I  E+ T   LF   S      + D L  +   LG     +  G     D+         
Sbjct: 192 IFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSFPKWAR 245

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
               +  P                +D    L  +L + P KR +A   L+HP+      +
Sbjct: 246 QDFSKVVP-------------PLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQ---DV 289

Query: 300 REP 302
            +P
Sbjct: 290 TKP 292

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 346

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.2 bits (202), Expect = 4e-18
 Identities = 45/202 (22%), Positives = 78/202 (38%), Gaps = 22/202 (10%)

Query: 130 DVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS-KYSTSADLWSFACICFELATGD 188
           D + K++DFG A     + T  + TR YR PEV+L   +Y+ + D+WS  CI  E+ TG 
Sbjct: 157 DCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGK 216

Query: 189 VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM 248
            LF            D L  +M++ G  P +     +         G     ++      
Sbjct: 217 TLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKGLPELEKK------ 264

Query: 249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPSMAAGE 308
                +        +    + L  +L    E+R TA + L+HP+      L +      +
Sbjct: 265 -----DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFE---SLHDTEDEP-Q 315

Query: 309 PRETEGSIPERKRREQEEREAM 330
            ++ + S  +  R   E +   
Sbjct: 316 VQKYDDSFDDVDRTLDEWKRVT 337

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 270

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.3 bits (195), Expect = 2e-17
 Identities = 22/170 (12%), Positives = 48/170 (28%), Gaps = 47/170 (27%)

Query: 125 LLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACICFE 183
            +       K+ D G A      F   +  T ++  PE+    KY  S D+++F     E
Sbjct: 146 FITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLE 204

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           +AT +  +                                     +  N     R +   
Sbjct: 205 MATSEYPYS------------------------------------ECQNAAQIYRRVTSG 228

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                         F++    ++ + +   +    ++R +    L+H + 
Sbjct: 229 VKPA---------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFF 269

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.1 bits (192), Expect = 6e-17
 Identities = 36/184 (19%), Positives = 59/184 (32%), Gaps = 48/184 (26%)

Query: 123 KNLLAAVDVQCKLVDFGNAC---WTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
            N+L  +D   KL DFG          + +  + T  +  PEV+    Y    D+WS   
Sbjct: 145 DNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGI 204

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           +  E+  G+  +          +E+ L  +          IA  G               
Sbjct: 205 MAIEMIEGEPPYL---------NENPLRAL--------YLIATNGTP------------- 234

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL 299
                          +    E+ +    DFL   LD   EKR +A + L H ++     L
Sbjct: 235 ---------------ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKIAKPL 279

Query: 300 REPS 303
              +
Sbjct: 280 SSLT 283

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]} Length = 269

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.8 bits (186), Expect = 3e-16
 Identities = 34/172 (19%), Positives = 52/172 (30%), Gaps = 50/172 (29%)

Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQ-TRQYRCPEVLLGSKYSTSADLWSFACI 180
           N+        KL DFG A        F      T  Y  PE +    Y+  +D+WS  C+
Sbjct: 144 NVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSYNEKSDIWSLGCL 203

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
            +EL      F   S               EL G +                R G  R I
Sbjct: 204 LYELCALMPPFTAFS-------------QKELAGKI----------------REGKFRRI 234

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPW 292
                               R + ++ + +  +L+     RP+  + L +P 
Sbjct: 235 ------------------PYRYSDELNEIITRMLNLKDYHRPSVEEILENPL 268

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.4 bits (185), Expect = 4e-16
 Identities = 36/179 (20%), Positives = 65/179 (36%), Gaps = 53/179 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACW---THKQFTNDIQTRQYRCPEVLLG-----SKYSTSADLW 175
           N+L  +D   KL DFG +     T ++  + I T  +  PEV++        Y   AD+W
Sbjct: 140 NILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDRPYDYKADVW 199

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           S      E+A  +             + + + +++++    P  +A   R+S +F     
Sbjct: 200 SLGITLIEMAEIEPPHH---------ELNPMRVLLKIAKSEPPTLAQPSRWSSNF----- 245

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
                                           DFL   L+   + R T +Q L HP+++
Sbjct: 246 -------------------------------KDFLKKCLEKNVDARWTTSQLLQHPFVT 273

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

 Score = 76.3 bits (187), Expect = 4e-16
 Identities = 38/228 (16%), Positives = 66/228 (28%), Gaps = 49/228 (21%)

Query: 125 LLAAVDVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICF 182
                  + KL+DFG        +       T ++  PEV  G       D+WS   + +
Sbjct: 157 FTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSY 216

Query: 183 ELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR 242
            L +G   F   +      D++ L  +      M                          
Sbjct: 217 ILLSGLSPFGGEN------DDETLRNVKSCDWNMDDSA---------------------- 248

Query: 243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREP 302
                               ++D  DF+  +L   P  R T  Q L HPW++ G      
Sbjct: 249 ----------------FSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAPGRD 292

Query: 303 SMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQE 350
           S     P      I +  + + +        +G ++   + +    QE
Sbjct: 293 SQI---PSSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQE 337

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]} Length = 335

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.9 bits (186), Expect = 4e-16
 Identities = 44/207 (21%), Positives = 72/207 (34%), Gaps = 56/207 (27%)

Query: 130 DVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
           +   KL DFG A    +H   T    T  Y  PEVL   KY  S D+WS   I + L  G
Sbjct: 150 NAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCG 209

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F  + G             + +   M  +I +G                        
Sbjct: 210 YPPFYSNHG-------------LAISPGMKTRIRMG------------------------ 232

Query: 248 MNKVLVEKYDFNERDA----KDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
                  +Y+F   +     +++   +  +L   P +R T  + ++HPW      + + +
Sbjct: 233 -------QYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPW------IMQST 279

Query: 304 MAAGEPRETEGSIPERKRREQEEREAM 330
                P  T   + E K R ++ +E M
Sbjct: 280 KVPQTPLHTSRVLKEDKERWEDVKEEM 306

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (179), Expect = 3e-15
 Identities = 31/166 (18%), Positives = 54/166 (32%), Gaps = 46/166 (27%)

Query: 130 DVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
             + K++DFG A       +F N   T ++  PE++        AD+WS   I + L +G
Sbjct: 153 KPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSG 212

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F   +       ++ LA +  +                                   
Sbjct: 213 ASPFLGDT------KQETLANVSAVNYEFED----------------------------- 237

Query: 248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                    ++    +    DF+  +L   P+KR T    L HPW+
Sbjct: 238 ---------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWI 274

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 307

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 37/191 (19%), Positives = 55/191 (28%), Gaps = 46/191 (24%)

Query: 114 HRRPSRATRKNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKYSTS 171
           HR              D +  + DFG +         +    T  Y  PEVL    YS +
Sbjct: 130 HRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSKA 189

Query: 172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF 231
            D WS   I + L  G   F                                       F
Sbjct: 190 VDCWSIGVIAYILLCGYPPFY-------------------------------DENDAKLF 218

Query: 232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP 291
            +     +     +W          D ++       DF+  +++  PEKR T  Q L HP
Sbjct: 219 EQILKAEYEFDSPYWD---------DISD----SAKDFIRHLMEKDPEKRFTCEQALQHP 265

Query: 292 WMSAGPQLREP 302
           W++    L + 
Sbjct: 266 WIAGDTALDKN 276

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 71.6 bits (175), Expect = 1e-14
 Identities = 37/210 (17%), Positives = 69/210 (32%), Gaps = 53/210 (25%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGS---KYSTSADLWSFACI 180
           N+L +     KL DFG+A       +  + T  +  PEV+L     +Y    D+WS    
Sbjct: 145 NILLSEPGLVKLGDFGSASIMAPANSF-VGTPYWMAPEVILAMDEGQYDGKVDVWSLGIT 203

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
           C ELA         +              M  L      IA     +             
Sbjct: 204 CIELAERKPPLFNMN-------------AMSAL----YHIAQNESPALQ----------- 235

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLR 300
                             +   ++   +F+   L  +P+ RPT+   L H ++    + R
Sbjct: 236 ------------------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVL---RER 274

Query: 301 EPSMAAGEPRETEGSIPERKRREQEEREAM 330
            P++     + T+ ++ E    +  + + +
Sbjct: 275 PPTVIMDLIQRTKDAVRELDNLQYRKMKKI 304

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 32/182 (17%), Positives = 56/182 (30%), Gaps = 56/182 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLLGSKY-STSADLWSFACIC 181
            L+     + KL+DFG+          D   TR Y  PE +   +Y   SA +WS   + 
Sbjct: 141 ILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILL 200

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +++                             G +P                        
Sbjct: 201 YDMVC---------------------------GDIP------------------------ 209

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLRE 301
              F    +++  +  F +R + +    +   L   P  RPT  +  +HPWM      +E
Sbjct: 210 ---FEHDEEIIRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDVLLPQE 266

Query: 302 PS 303
            +
Sbjct: 267 TA 268

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 35/226 (15%), Positives = 70/226 (30%), Gaps = 62/226 (27%)

Query: 130 DVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATG 187
               K+++FG A        F       +Y  PEV      ST+ D+WS   + + L +G
Sbjct: 140 SSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSG 199

Query: 188 DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP 247
              F   +                                                    
Sbjct: 200 INPFLAETNQQI------------------------------------------------ 211

Query: 248 MNKVLVEKYDFNERDAKDM----ADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREPS 303
           +  ++  +Y F+E   K++     DF+  +L    + R TA++ L HPW+    +     
Sbjct: 212 IENIMNAEYTFDEEAFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQKIERVSTK 271

Query: 304 MAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQ 349
           +          ++  R+      ++ + + V    I+    + S +
Sbjct: 272 VIR--------TLKHRRYYHTLIKKDLNMVVSAARISCGGAIRSQK 309

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]} Length = 352

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

 Score = 71.2 bits (174), Expect = 2e-14
 Identities = 34/237 (14%), Positives = 65/237 (27%), Gaps = 50/237 (21%)

Query: 116 RPSRATRKNLLAAVDVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGSKYSTSAD 173
              +              K++DFG A      +       T ++  PE++         D
Sbjct: 151 LDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGFYTD 210

Query: 174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR 233
           +W+   + + L +G   F          D + L  +                        
Sbjct: 211 MWAIGVLGYVLLSGLSPFAGED------DLETLQNVKRCDWEFDE--------------- 249

Query: 234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
                                  D     + +  DF+  +L   P KR T    L HPW+
Sbjct: 250 -----------------------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWL 286

Query: 294 SAGPQLREPSMAAGEPRETEGSIPERKRREQEEREAMEVGVGNMAINGASKLSSDQE 350
                     +    P      I ++ + +  +  A +  +G +A   + +    QE
Sbjct: 287 KGDHSNLTSRI----PSSRYNKIRQKIKEKYADWPAPQPAIGRIANFSSLRKHRPQE 339

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (171), Expect = 3e-14
 Identities = 33/183 (18%), Positives = 53/183 (28%), Gaps = 53/183 (28%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQT-----RQYRCPEVLLGSKYSTSADLWSFA 178
           N+L   D+  ++ DFG A     +             QY  PE+L       S+DLW+  
Sbjct: 138 NILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSACKSSDLWALG 197

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
           CI ++L  G     P    N             +                          
Sbjct: 198 CIIYQLVAG---LPPFRAGN----------EYLIF------------------------- 219

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ 298
                      K++  +YDF E+      D +  +L     KR    +   +  + A P 
Sbjct: 220 ----------QKIIKLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPF 269

Query: 299 LRE 301
              
Sbjct: 270 FES 272

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 271

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (167), Expect = 8e-14
 Identities = 26/177 (14%), Positives = 46/177 (25%), Gaps = 51/177 (28%)

Query: 124 NLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYST-SADLWSF 177
           NLL       K+ DFG A         +       T  Y  PE+L   ++     D+WS 
Sbjct: 133 NLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSC 192

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             +   +  G++ +D  S                                    +   + 
Sbjct: 193 GIVLTAMLAGELPWDQPS------------------------------------DSCQEY 216

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS 294
              +  + +          +  ++        L  IL   P  R T        W +
Sbjct: 217 SDWKEKKTYL---------NPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYN 264

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]} Length = 320

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.0 bits (168), Expect = 9e-14
 Identities = 37/176 (21%), Positives = 55/176 (31%), Gaps = 52/176 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
            N+L   D   K+ DFG          +      T  Y  PE+LLG KY+ S D WSF  
Sbjct: 132 DNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGV 191

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           + +E+  G   F       + +DE+ L                                 
Sbjct: 192 LLYEMLIGQSPF-------HGQDEEEL--------------------------------- 211

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA-QCLSHPWMS 294
                    + + ++   +     K+  D LV +    PEKR         HP   
Sbjct: 212 --------FHSIRMDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFR 259

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 68.2 bits (166), Expect = 1e-13
 Identities = 35/183 (19%), Positives = 56/183 (30%), Gaps = 60/183 (32%)

Query: 123 KNLLAAVDVQCKLVDFGNACW--THKQFTNDIQTRQYRCPEVLLGS------KYSTSADL 174
           +N+L   D+  KL DFG +C     ++      T  Y  PE++  S       Y    D+
Sbjct: 139 ENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDM 198

Query: 175 WSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH 234
           WS   I + L  G   F              + +                          
Sbjct: 199 WSTGVIMYTLLAGSPPFW---------HRKQMLM-------------------------- 223

Query: 235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDM----ADFLVPILDFVPEKRPTAAQCLSH 290
                        +  ++   Y F   +  D      D +   L   P+KR TA + L+H
Sbjct: 224 -------------LRMIMSGNYQFGSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAH 270

Query: 291 PWM 293
           P+ 
Sbjct: 271 PFF 273

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.8 bits (165), Expect = 2e-13
 Identities = 32/176 (18%), Positives = 49/176 (27%), Gaps = 53/176 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
           N+L   +   K+ DFG A +          T  Y  PEV+    Y+ S D WSF  + +E
Sbjct: 134 NILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYE 193

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           +  G   F                           K                        
Sbjct: 194 MLAGYTPFY---------------------DSNTMKT----------------------- 209

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR-----PTAAQCLSHPWMS 294
                 K+L  +  F     +D+ D L  ++     +R            +HPW  
Sbjct: 210 ----YEKILNAELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFK 261

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 276

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 31/175 (17%), Positives = 54/175 (30%), Gaps = 50/175 (28%)

Query: 124 NLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLG---SKYSTSADLW 175
           N+    D+  K+ DFG A          QF     +  +  PEV+     + YS  +D++
Sbjct: 134 NIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPYSFQSDVY 193

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           +F  + +EL TG + +                                     +  NR  
Sbjct: 194 AFGIVLYELMTGQLPYS------------------------------------NINNRDQ 217

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
            +  + R    P      +         K M   +   L    ++RP   Q L+ 
Sbjct: 218 IIFMVGRGYLSP------DLSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS 266

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 262

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.5 bits (154), Expect = 4e-12
 Identities = 25/167 (14%), Positives = 50/167 (29%), Gaps = 46/167 (27%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
           N+L + D   K+ DFG                ++  PE L   K+ST +D+WSF  + +E
Sbjct: 133 NVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWE 192

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           + +   +  P+              + +++     ++  G                    
Sbjct: 193 IYSFGRV--PYPRIP----------LKDVV----PRVEKG-------------------- 216

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                      K D  +     + + +          RP+  Q    
Sbjct: 217 ----------YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ 253

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.0 bits (147), Expect = 4e-11
 Identities = 31/179 (17%), Positives = 54/179 (30%), Gaps = 56/179 (31%)

Query: 124 NLLAAVDVQCKLVDFGNA---CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACI 180
           NL+   D   K+ DFG                 T +Y  PEVL  + Y  + D W    +
Sbjct: 135 NLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVV 194

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
            +E+  G + F       Y++D + L                                  
Sbjct: 195 MYEMMCGRLPF-------YNQDHERL---------------------------------- 213

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMS 294
                     +L+E+  F    + +    L  +L   P++R       A + + H +  
Sbjct: 214 -------FELILMEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFL 265

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]} Length = 303

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (145), Expect = 7e-11
 Identities = 26/179 (14%), Positives = 51/179 (28%), Gaps = 39/179 (21%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-------THKQFTNDIQTRQYRCPEVLLGS------KYS 169
           KN+L   +  C + D G A               + + T++Y  PEVL  S      +  
Sbjct: 137 KNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRYMAPEVLDDSINMKHFESF 196

Query: 170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRD 229
             AD+++   + +E+A    +   H                                  D
Sbjct: 197 KRADIYAMGLVFWEIARRCSIGGIHEDYQLPY--------------------------YD 230

Query: 230 FFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL 288
                  +  +R++      +  +     +    + MA  +          R TA +  
Sbjct: 231 LVPSDPSVEEMRKVVCEQKLRPNIPNRWQSCEALRVMAKIMRECWYANGAARLTALRIK 289

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]} Length = 364

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (144), Expect = 1e-10
 Identities = 33/179 (18%), Positives = 52/179 (29%), Gaps = 52/179 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ-TRQYRCPEVLL-GSKYSTSADLWSFACI 180
            N+L       ++ D G AC   K+  +    T  Y  PEVL  G  Y +SAD +S  C+
Sbjct: 136 ANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCM 195

Query: 181 CFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI 240
            F+L  G   F  H                                         D   I
Sbjct: 196 LFKLLRGHSPFRQHK--------------------------------------TKDKHEI 217

Query: 241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMS 294
            R+             +  +  + ++   L  +L     +R       A +    P+  
Sbjct: 218 DRMTLTM-------AVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFR 269

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 350

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.0 bits (142), Expect = 2e-10
 Identities = 28/176 (15%), Positives = 49/176 (27%), Gaps = 53/176 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
           NLL       ++ DFG A     +      T +   PE++L   Y+ + D W+   + +E
Sbjct: 171 NLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYE 230

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
           +A G   F                  +++   +                           
Sbjct: 231 MAAGYPPFFADQ-------------PIQIYEKIVS------------------------- 252

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKR-----PTAAQCLSHPWMS 294
                      K  F    + D+ D L  +L     KR            +H W +
Sbjct: 253 ----------GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFA 298

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (139), Expect = 4e-10
 Identities = 31/187 (16%), Positives = 59/187 (31%), Gaps = 52/187 (27%)

Query: 123 KNLLAAVDVQCKLVDFGNACW----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
            N+L   ++ CK+ DFG A       +          ++  PE  L  +++  +D+WSF 
Sbjct: 142 ANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFG 201

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            +  EL T   +  P                    GM+ R++                L 
Sbjct: 202 ILLTELTTKGRVPYP--------------------GMVNREV----------------LD 225

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSAG 296
            + R            +        + + D +       PE+RPT     +    + ++ 
Sbjct: 226 QVER----------GYRMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTST 275

Query: 297 PQLREPS 303
               +P 
Sbjct: 276 EPQYQPG 282

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.4 bits (135), Expect = 1e-09
 Identities = 20/186 (10%), Positives = 41/186 (22%), Gaps = 53/186 (28%)

Query: 130 DVQCKLVDFGNA----------CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
                ++DFG A             +++  N   T +Y      LG + S   DL S   
Sbjct: 142 GNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINTHLGIEQSRRDDLESLGY 201

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           +      G + +                                                
Sbjct: 202 VLMYFNLGSLPWQGLKAAT----------------------------------------K 221

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA---QCLSHPWMSAG 296
            ++       K+        +    + A +L        + +P  +   Q   + +   G
Sbjct: 222 RQKYERISEKKMSTPIEVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 281

Query: 297 PQLREP 302
                 
Sbjct: 282 FSYDYV 287

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 293

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 56.0 bits (134), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 16/104 (15%)

Query: 134 KLVDFGNA----------CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
            +VDFG               +++  N   T +Y      LG + S   DL +   +   
Sbjct: 146 YVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMY 205

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALM------MELLGMMPRKIA 221
              G + +         +  + +          EL    P +  
Sbjct: 206 FLRGSLPWQGLKAATNKQKYERIGEKKQSTPLRELCAGFPEEFY 249

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.2 bits (132), Expect = 3e-09
 Identities = 27/175 (15%), Positives = 51/175 (29%), Gaps = 53/175 (30%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-------THKQFTNDIQTRQYRCPEVLLGSKYSTSADLW 175
           +N +       K+ DFG A         +    T      ++   E L   K++T +D+W
Sbjct: 159 RNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTTKSDVW 218

Query: 176 SFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG 235
           SF  + +EL T         G     D +   +           +  G R  +       
Sbjct: 219 SFGVLLWELMTR--------GAPPYPDVNTFDIT--------VYLLQGRRLLQP------ 256

Query: 236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                                   E     + + ++       E RP+ ++ +S 
Sbjct: 257 ------------------------EYCPDPLYEVMLKCWHPKAEMRPSFSELVSR 287

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]} Length = 258

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (129), Expect = 5e-09
 Identities = 26/172 (15%), Positives = 54/172 (31%), Gaps = 50/172 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACW----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +N L       K+ DFG + +     +          ++  PEVL+ SK+S+ +D+W+F 
Sbjct: 129 RNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFG 188

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            + +E+ +                                     G+   + F       
Sbjct: 189 VLMWEIYS------------------------------------LGKMPYERFTNSETAE 212

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
           HI +            +       ++ +   +        ++RPT    LS+
Sbjct: 213 HIAQ----------GLRLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN 254

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 54.4 bits (130), Expect = 5e-09
 Identities = 30/176 (17%), Positives = 56/176 (31%), Gaps = 50/176 (28%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGSKYSTSADLWSF 177
           N++ +     K++DFG A        +  Q      T QY  PE   G      +D++S 
Sbjct: 141 NIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSL 200

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
            C+ +E+ TG+  F           +  +++                             
Sbjct: 201 GCVLYEVLTGEPPFT---------GDSPVSVAY--------------------------- 224

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM 293
           +H+R     P           +E  + D+   ++  L   PE R   A  +    +
Sbjct: 225 QHVREDPIPP--------SARHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLV 272

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 1e-08
 Identities = 24/171 (14%), Positives = 47/171 (27%), Gaps = 50/171 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQ----TRQYRCPEVLLGSKYSTSADLWSFAC 179
           N L   +   K+ DFG   +                ++  PEV   S+YS+ +D+WSF  
Sbjct: 131 NCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGV 190

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           + +E+ +                                     G+   +  +    +  
Sbjct: 191 LMWEVFS------------------------------------EGKIPYENRSNSEVVED 214

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
           I              +       +  +   +       PE RP  ++ L  
Sbjct: 215 IST----------GFRLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ 255

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]} Length = 322

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (127), Expect = 1e-08
 Identities = 27/182 (14%), Positives = 50/182 (27%), Gaps = 55/182 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQ----YRCPEVLLGSK--YSTSADLWSF 177
           N+L   +    L DFG +       T           Y  P+++ G    +  + D WS 
Sbjct: 159 NILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSL 218

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             + +EL TG   F           +       E+                         
Sbjct: 219 GVLMYELLTGASPFT---------VDGEKNSQAEI------------------------- 244

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPW 292
                       ++L  +  + +  +    D +  +L   P+KR       A +   H +
Sbjct: 245 ----------SRRILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLF 294

Query: 293 MS 294
             
Sbjct: 295 FQ 296

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 317

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 30/214 (14%), Positives = 55/214 (25%), Gaps = 51/214 (23%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N+L       K+ DFG A                   ++   E +L   Y+  +D+WS+
Sbjct: 140 RNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSDVWSY 199

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
               +EL T      P+ G              E+  ++ +                   
Sbjct: 200 GVTVWELMTFGSK--PYDGIP----------ASEISSILEKG------------------ 229

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                           E+         D+   +V       + RP   + +      A  
Sbjct: 230 ----------------ERLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 273

Query: 298 QLREPSMAAGEPRETEGSIPERKRREQEEREAME 331
             R   +   E             R   + E M+
Sbjct: 274 PQRYLVIQGDERMHLPSPTDSNFYRALMDEEDMD 307

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 301

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.2 bits (124), Expect = 3e-08
 Identities = 18/84 (21%), Positives = 42/84 (50%), Gaps = 7/84 (8%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N L   ++  K+ DFG +        +K   ND    ++  PE +  ++Y+T +D+W++
Sbjct: 169 RNCLVGENMVVKIADFGLSRNIYSADYYKADGNDAIPIRWMPPESIFYNRYTTESDVWAY 228

Query: 178 ACICFELATGDVLFDPHSGDNYDK 201
             + +E+ +      P+ G  +++
Sbjct: 229 GVVLWEIFSYG--LQPYYGMAHEE 250

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 309

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 28/169 (16%), Positives = 55/169 (32%), Gaps = 48/169 (28%)

Query: 124 NLLAAVDVQCKLVDFGNA--CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACIC 181
           N+L   +   K+ DFG +     + + T      ++   E L  S Y+T++D+WS+  + 
Sbjct: 157 NILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLL 216

Query: 182 FELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR 241
           +E+ +      P+ G              EL   +P+                       
Sbjct: 217 WEIVSLGGT--PYCGMT----------CAELYEKLPQG---------------------- 242

Query: 242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                        + +       ++ D +       P +RP+ AQ L  
Sbjct: 243 ------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS 279

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 325

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 28/172 (16%), Positives = 50/172 (29%), Gaps = 50/172 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           N+L       K+ DFG A        +    N     ++  PE L    Y+  +D+WS+ 
Sbjct: 194 NVLVTHGKVVKICDFGLARDIMSDSNYVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYG 253

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            + +E+ +  V   P+ G   D                                   +  
Sbjct: 254 ILLWEIFSLGVN--PYPGIPVDA----------------------------------NFY 277

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
            + +  F         K D      +++   +     F   KRP+     S 
Sbjct: 278 KLIQNGF---------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF 320

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]} Length = 277

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.5 bits (120), Expect = 9e-08
 Identities = 27/172 (15%), Positives = 52/172 (30%), Gaps = 55/172 (31%)

Query: 130 DVQCKLVDFGNA------CWTHKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFE 183
               K+ DFG +         +K  T+     ++  PE +   K+S+ +D+WSF  + +E
Sbjct: 143 QHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWE 202

Query: 184 LATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL 243
             +      P+ G              E+  M+ +                         
Sbjct: 203 AFSYGQK--PYRGMK----------GSEVTAMLEKG------------------------ 226

Query: 244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ---CLSHPW 292
                     E+        ++M D +     +  E RP  A     L + +
Sbjct: 227 ----------ERMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYY 268

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (115), Expect = 4e-07
 Identities = 30/174 (17%), Positives = 49/174 (28%), Gaps = 51/174 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQ------TRQYRCPEVLLGSKYSTSADLWS 176
           +NLL A     K+ DFG      +   + +          +  PE L    +S ++D W 
Sbjct: 140 RNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTFSHASDTWM 199

Query: 177 FACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGD 236
           F    +E+ T         G       +   ++         KI   G            
Sbjct: 200 FGVTLWEMFTY--------GQEPWIGLNGSQIL--------HKIDKEG------------ 231

Query: 237 LRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                            E+    E   +D+ + +V      PE RPT       
Sbjct: 232 -----------------ERLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDF 268

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]} Length = 287

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (111), Expect = 1e-06
 Identities = 27/171 (15%), Positives = 55/171 (32%), Gaps = 50/171 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACW----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +N L   +   K+ DFG +      T+          ++  PE L  +K+S  +D+W+F 
Sbjct: 144 RNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFG 203

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
            + +E+AT  +   P        D   +  ++E                           
Sbjct: 204 VLLWEIATYGMSPYP------GIDLSQVYELLE--------------------------- 230

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS 289
             +  R            +  E   + + + +     + P  RP+ A+   
Sbjct: 231 --KDYRM-----------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ 268

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-06
 Identities = 27/173 (15%), Positives = 56/173 (32%), Gaps = 50/173 (28%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N+L +     K+ DFG A        + +  +     ++  PE +    Y+  +D+WSF
Sbjct: 163 RNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPLKWMAPETIFDRVYTIQSDVWSF 222

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             + +E+ +      P+ G   D+                R++  G R            
Sbjct: 223 GVLLWEIFSLGAS--PYPGVKIDE-------------EFCRRLKEGTR------------ 255

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                                 +    +M   ++      P +RPT ++ + H
Sbjct: 256 ------------------MRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH 290

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]} Length = 272

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 52/178 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACW----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFAC 179
           N+L +  + CK+ DFG A       +          ++  PE +    ++  +D+WSF  
Sbjct: 139 NILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGI 198

Query: 180 ICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH 239
           +  E+ T   +  P   +             E++    + +  G R  R           
Sbjct: 199 LLTEIVTHGRIPYPGMTN------------PEVI----QNLERGYRMVRP---------- 232

Query: 240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSA 295
                               +   +++   +       PE RPT     S    + +A
Sbjct: 233 --------------------DNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA 270

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 308

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 32/186 (17%), Positives = 63/186 (33%), Gaps = 51/186 (27%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N + A D   K+ DFG          +++    +   ++  PE L    ++T +D+WSF
Sbjct: 162 RNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSF 221

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             + +E+AT      P+ G + ++              + R +  GG             
Sbjct: 222 GVVLWEIATLAEQ--PYQGLSNEQ--------------VLRFVMEGGL------------ 253

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP 297
                              D  +     + + +     + P+ RP+  + +S       P
Sbjct: 254 ------------------LDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEP 295

Query: 298 QLREPS 303
             RE S
Sbjct: 296 GFREVS 301

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 283

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 36/81 (44%), Gaps = 6/81 (7%)

Query: 124 NLLAAVDVQCKLVDFGNACW------THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           N+L   ++ CK+ DFG +             +      ++  PE +   K+++++D+WSF
Sbjct: 140 NILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSASDVWSF 199

Query: 178 ACICFELATGDVLFDPHSGDN 198
             + +E+ T          ++
Sbjct: 200 GIVMWEVMTYGERPYWELSNH 220

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 24/180 (13%), Positives = 49/180 (27%), Gaps = 55/180 (30%)

Query: 124 NLLAAVDVQCKLVDFGNACW------THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           N+L       K+ DFG +         +   +      ++  PE +   K+S+ +D+WS+
Sbjct: 139 NVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKFSSRSDVWSY 198

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
               +E  +      P+                E++      I  G R            
Sbjct: 199 GVTMWEALSYGQK--PYKKMK----------GPEVM----AFIEQGKRM----------- 231

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA---QCLSHPWMS 294
                              +       ++   +     +  E RP      Q +   + S
Sbjct: 232 -------------------ECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS 272

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 15/72 (20%), Positives = 37/72 (51%), Gaps = 8/72 (11%)

Query: 123 KNLLAAVDVQCKLVDFGNACW--------THKQFTNDIQTRQYRCPEVLLGSKYSTSADL 174
           +N+L   ++ CK+ DFG + +        T+          ++  PE +   K+++++D+
Sbjct: 157 RNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYRKFTSASDV 216

Query: 175 WSFACICFELAT 186
           WS+  + +E+ +
Sbjct: 217 WSYGIVMWEVMS 228

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 299

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (105), Expect = 6e-06
 Identities = 32/173 (18%), Positives = 55/173 (31%), Gaps = 51/173 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSF 177
           +N+L   D   K+ DFG A        +K+ TN     ++  PE L    Y+  +D+WSF
Sbjct: 164 RNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLPVKWMAPEALFDRIYTHQSDVWSF 223

Query: 178 ACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDL 237
             + +E+ T      P+ G            + EL  ++                     
Sbjct: 224 GVLLWEIFTLGGS--PYPGVP----------VEELFKLLKEG------------------ 253

Query: 238 RHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
                            + D       ++   +      VP +RPT  Q +  
Sbjct: 254 ----------------HRMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVED 290

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]} Length = 273

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 20/172 (11%), Positives = 50/172 (29%), Gaps = 50/172 (29%)

Query: 123 KNLLAAVDVQCKLVDFGNACW----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           +N+L + +   KL DFG + +    T+ + +      ++  PE +   ++++++D+W F 
Sbjct: 137 RNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTSASDVWMFG 196

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
              +E+                                       G         +  + 
Sbjct: 197 VCMWEILM------------------------------------HGVKPFQGVKNNDVIG 220

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH 290
            I             E+          +   +     + P +RP   +  + 
Sbjct: 221 RIEN----------GERLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ 262

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 28/170 (16%), Positives = 45/170 (26%), Gaps = 50/170 (29%)

Query: 124 NLLAAVDVQCKLVDFGNACW-----THKQFTNDIQTRQYRCPEVLLGSKYSTSADLWSFA 178
           N+L       K+ DFG A        +    N     ++  PE +    Y+  +D+WS+ 
Sbjct: 175 NILLTHGRITKICDFGLARDIKNDSNYVVKGNARLPVKWMAPESIFNCVYTFESDVWSYG 234

Query: 179 CICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR 238
              +EL +                                     G              
Sbjct: 235 IFLWELFS------------------------------------LGSSPYPGMPVDSKFY 258

Query: 239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL 288
            + +  F              E    +M D +    D  P KRPT  Q +
Sbjct: 259 KMIKEGFRM---------LSPEHAPAEMYDIMKTCWDADPLKRPTFKQIV 299

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	358
d1nvra_	271	Cell cycle checkpoint kinase chk1 {Human (Homo sap	100.0
d2j4za1	263	Aurora-related kinase 1 (aurora-2) {Human (Homo sa	100.0
d1ua2a_	299	Cell division protein kinase 7, CDK7 {Human (Homo	100.0
d1a06a_	307	Calmodulin-dependent protein kinase {Rat (Rattus n	100.0
d1yhwa1	293	pak1 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1s9ja_	322	Dual specificity mitogen-activated protein kinase	100.0
d1t4ha_	270	Protein kinase wnk1 {Human (Homo sapiens) [TaxId:	100.0
d1uu3a_	288	3-phosphoinositide dependent protein kinase-1 Pdk1	100.0
d2jfla1	288	STE20-like serine/threonine-protein kinase, SLK {H	100.0
d1koaa2	350	Twitchin, kinase domain {Caenorhabditis elegans, p	100.0
d1fota_	316	cAMP-dependent PK, catalytic subunit {Baker's yeas	100.0
d1koba_	352	Twitchin, kinase domain {California sea hare (Aply	100.0
d2java1	269	Serine/threonine-protein kinase Nek2 {Human (Homo	100.0
d1o6la_	337	Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9	100.0
d1jksa_	293	Death-associated protein kinase, Dap {Human (Homo	100.0
d1u5ra_	309	Serine/threonine protein kinase TAO2 {Rat (Rattus	100.0
d1rdqe_	350	cAMP-dependent PK, catalytic subunit {Mouse (Mus m	100.0
d1omwa3	364	G-protein coupled receptor kinase 2 {Cow (Bos taur	100.0
d1xjda_	320	Protein kinase C, theta type {Human (Homo sapiens)	100.0
d1phka_	277	gamma-subunit of glycogen phosphorylase kinase (Ph	100.0
d1blxa_	305	Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [T	100.0
d2ozaa1	335	MAP kinase activated protein kinase 2, mapkap2 {Hu	100.0
d1cm8a_	346	MAP kinase p38-gamma {Human (Homo sapiens) [TaxId:	100.0
d3blha1	318	Cell division protein kinase 9, CDK9 {Human (Homo	100.0
d1ob3a_	286	Cyclin-dependent PK, CDK2 {(Plasmodium falciparum)	100.0
d1uwha_	276	B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xwsa_	273	Proto-oncogene serine/threonine-protein kinase Pim	100.0
d2b1pa1	355	c-jun N-terminal kinase (jnk3s) {Human (Homo sapie	100.0
d1gz8a_	298	Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [T	100.0
d1tkia_	321	Titin, kinase domain {Human (Homo sapiens) [TaxId:	100.0
d1u59a_	285	Tyrosine-protein kinase ZAP-70 {Human (Homo sapien	100.0
d1jpaa_	299	ephb2 receptor tyrosine kinase {Mouse (Mus musculu	100.0
d1ywna1	299	Vascular endothelial growth factor receptor 2 (kdr	100.0
d1xbba_	277	Tyrosine-protein kinase SYK {Human (Homo sapiens)	100.0
d1q5ka_	350	Glycogen synthase kinase-3 beta (Gsk3b) {Human (Ho	100.0
d1qpca_	272	Lymphocyte kinase (lck) {Human (Homo sapiens) [Tax	100.0
d2gfsa1	348	MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]	100.0
d3bqca1	328	Protein kinase CK2, alpha subunit {Rattus norvegic	100.0
d1rjba_	325	Fl cytokine receptor {Human (Homo sapiens) [TaxId:	100.0
d1pmea_	345	MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606	100.0
d1sm2a_	263	Tyrosine-protein kinase Itk/Tsk {Human (Homo sapie	100.0
d1fmka3	285	c-src tyrosine kinase {Human (Homo sapiens) [TaxId	100.0
d1mp8a_	273	Focal adhesion kinase 1 (fak) {Human (Homo sapiens	100.0
d1o6ya_	277	Mycobacterial protein kinase PknB, catalytic domai	100.0
d1opja_	287	Abelsone tyrosine kinase (abl) {Mouse (Mus musculu	100.0
d1k2pa_	258	Bruton's tyrosine kinase (Btk) {Human (Homo sapien	100.0
d1q8ya_	362	Sky1p {Baker's yeast (Saccharomyces cerevisiae) [T	100.0
d1unla_	292	Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [T	100.0
d1vzoa_	322	Ribosomal protein S6 kinase alpha 5, Msk1 {Human (	100.0
d1mqba_	283	epha2 receptor tyrosine kinase {Human (Homo sapien	100.0
d1byga_	262	Carboxyl-terminal src kinase (csk) {Human (Homo sa	100.0
d1fgka_	299	Fibroblast growth factor receptor 1 {Human (Homo s	100.0
d1lufa_	301	Musk tyrosine kinase {Rat (Rattus norvegicus) [Tax	100.0
d1xkka_	317	EGF receptor tyrosine kinase, Erbb-1 {Human (Homo	100.0
d1r0pa_	311	Hepatocyte growth factor receptor, c-MET {Human (H	100.0
d1p4oa_	308	Insulin-like growth factor 1 receptor {Human (Homo	100.0
d1fvra_	309	Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1t46a_	311	c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]	100.0
d1u46a_	273	Activated CDC42 kinase 1, ACK1 {Human (Homo sapien	100.0
d1vjya_	303	Type I TGF-beta receptor R4 {Human (Homo sapiens)	100.0
d1ckia_	299	Casein kinase-1, CK1 {Rat (Rattus norvegicus) [Tax	100.0
d1csna_	293	Casein kinase-1, CK1 {Fission yeast (Schizosacchar	99.97
d1zara2	191	Rio2 serine protein kinase C-terminal domain {Arch	99.24

>d1nvra_ d.144.1.7 (A:) Cell cycle checkpoint kinase chk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell cycle checkpoint kinase chk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-46  Score=331.27  Aligned_cols=228  Identities=16%  Similarity=0.125  Sum_probs=179.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|++......+..+++.++.+...+  +.|++++.+.+.... ....|+|||||+||+|.+++.....+++.+
T Consensus        28 ~~~~~vAiK~i~~~~~~~~~~~~~~Ei~~l~~--l~HpnIv~~~~~~~~-~~~~~ivmEy~~gg~L~~~l~~~~~l~e~~  104 (271)
T d1nvra_          28 VTEEAVAVKIVDMKRAVDCPENIKKEICINKM--LNHENVVKFYGHRRE-GNIQYLFLEYCSGGELFDRIEPDIGMPEPD  104 (271)
T ss_dssp             TTCCEEEEEEEECC-------CHHHHHHHHHT--CCCTTBCCEEEEEEE-TTEEEEEEECCTTEEGGGGSBTTTBCCHHH
T ss_pred             CCCCEEEEEEEehhhcchHHHHHHHHHHHHHh--CCCCCEeeEeeeecc-CceeEEEEeccCCCcHHHHHhcCCCCCHHH
Confidence            56888999999877666667778888877666  468888888776543 457899999999999999999888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCCCC-C
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGSKY-S  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~~~-~  169 (358)
                      +..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....     ..+..+||+.|||||++.+..| +
T Consensus       105 ~~~i~~qi~~al~ylH~~~IiHrDiKp~NILl~~~~~~KL~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~~~  184 (271)
T d1nvra_         105 AQRFFHQLMAGVVYLHGIGITHRDIKPENLLLDERDNLKISDFGLATVFRYNNRERLLNKMCGTLPYVAPELLKRREFHA  184 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECTTCCEEECCCTTCEECEETTEECCBCCCCSCGGGSCTHHHHCSSBCH
T ss_pred             HHHHHHHHHHHHHHHHHcCCccCcccHHHEEECCCCCEEEccchhheeeccCCccccccceeeCcCccCHhHhcCCCCCC
Confidence            99999999999999999999999    999999999999999999986531     2456689999999999999886 6


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++||||+||++|+|++|++||...+...     .....+   .....                                
T Consensus       185 ~~~DiwSlGvilyeml~G~~pf~~~~~~~-----~~~~~~---~~~~~--------------------------------  224 (271)
T d1nvra_         185 EPVDVWSCGIVLTAMLAGELPWDQPSDSC-----QEYSDW---KEKKT--------------------------------  224 (271)
T ss_dssp             HHHHHHHHHHHHHHHHHSSCSCSSSSTTS-----HHHHHH---HTTCT--------------------------------
T ss_pred             CceeeeHhHHHHHHHHhCCCCCCCCChHH-----HHHHHH---hcCCC--------------------------------
Confidence            78999999999999999999997544211     111111   00000                                


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                           .......+++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       225 -----~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hpwf~~  265 (271)
T d1nvra_         225 -----YLNPWKKIDSAPLALLHKILVENPSARITIPDIKKDRWYNK  265 (271)
T ss_dssp             -----TSTTGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTCTTTTC
T ss_pred             -----CCCccccCCHHHHHHHHHHcCCChhHCcCHHHHhcCHhhCc
Confidence                 00112345778999999999999999999999999999985

>d2j4za1 d.144.1.7 (A:126-388) Aurora-related kinase 1 (aurora-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Aurora-related kinase 1 (aurora-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-46  Score=330.86  Aligned_cols=225  Identities=17%  Similarity=0.271  Sum_probs=185.3

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  .....++++.+...+  +.|++++.+.+.... ...+|+|||||+||+|.+++.....+++
T Consensus        29 ~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~il~~--l~hpnIv~~~~~~~~-~~~~~ivmEy~~~g~L~~~l~~~~~l~e  105 (263)
T d2j4za1          29 QSKFILALKVLFKAQLEKAGVEHQLRREVEIQSH--LRHPNILRLYGYFHD-ATRVYLILEYAPLGTVYRELQKLSKFDE  105 (263)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHT--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSSCCH
T ss_pred             CCCcEEEEEEEchHHccChHHHHHHHHHHHHHHh--cCCCCCCeEEEEEEE-CCEEEEEEeecCCCcHHHHHhhcCCCCH
Confidence            46778999988754322  334566677666665  468888888776653 4578999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcch
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|..... .....+||+.|+|||++.+..|+.++
T Consensus       106 ~~~~~i~~qi~~al~~lH~~~ivHrDiKp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~  185 (263)
T d2j4za1         106 QRTATYITELANALSYCHSKRVIHRDIKPENLLLGSAGELKIADFGWSVHAPSSRRTTLCGTLDYLPPEMIEGRMHDEKV  185 (263)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEECCCCSCSCCCCCCCEETTEEGGGCCHHHHTTCCCCTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCeeeeeeccccceecCCCCEeecccceeeecCCCcccccCCCCcccCHHHHcCCCCCchh
Confidence            9999999999999999999999999    999999999999999999976643 34556899999999999999999999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      |||||||++|+|++|++||.+.+      ..+.+..+.+                                         
T Consensus       186 DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~-----------------------------------------  218 (263)
T d2j4za1         186 DLWSLGVLCYEFLVGKPPFEANT------YQETYKRISR-----------------------------------------  218 (263)
T ss_dssp             HHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHT-----------------------------------------
T ss_pred             hhhhHhHHHHHHhcCCCCCCCCC------HHHHHHHHHc-----------------------------------------
Confidence            99999999999999999997544      2333322221                                         


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                       ..+.++...++++.+||.+||+.||++|||++|+|+||||++
T Consensus       219 -~~~~~p~~~s~~~~~li~~~L~~dp~~R~t~~eil~hp~~~~  260 (263)
T d2j4za1         219 -VEFTFPDFVTEGARDLISRLLKHNPSQRPMLREVLEHPWITA  260 (263)
T ss_dssp             -TCCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTCHHHHH
T ss_pred             -CCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHHcCcCcCC
Confidence             122344556789999999999999999999999999999974

>d1ua2a_ d.144.1.7 (A:) Cell division protein kinase 7, CDK7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 7, CDK7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-45  Score=327.58  Aligned_cols=260  Identities=21%  Similarity=0.203  Sum_probs=199.1

Q ss_pred             ccCcccccccccCccchhh----hHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQ----KKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..||+|.+........    .+++.++.+...+  +.|++++.+.+.... ...+|+|||||.||++..+......+
T Consensus        21 ~~~~~vAvK~i~~~~~~~~~~~~~~~~~~Ei~il~~--l~hpnIv~~~~~~~~-~~~~~ivmE~~~~~~~~~~~~~~~~l   97 (299)
T d1ua2a_          21 NTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQE--LSHPNIIGLLDAFGH-KSNISLVFDFMETDLEVIIKDNSLVL   97 (299)
T ss_dssp             SCCSEEEEEEC------------CTHHHHHHHHHHH--CCCTTBCCEEEEECC-TTCCEEEEECCSEEHHHHHTTCCSSC
T ss_pred             CCCcEEEEEEEehhhhhhhhHHHHHHHHHHHHHHHh--CCCCCEeEEEeeecc-CCceeehhhhhcchHHhhhhhcccCC
Confidence            4677899999876543332    3456677766666  467888888776654 45789999999999999888888889


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCC-C
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGS-K  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~-~  167 (358)
                      ++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....   .....+||+.|+|||++.+. .
T Consensus        98 ~~~~~~~~~~qil~aL~~lH~~~iiHrDiKp~NIli~~~~~~KL~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  177 (299)
T d1ua2a_          98 TPSHIKAYMLMTLQGLEYLHQHWILHRDLKPNNLLLDENGVLKLADFGLAKSFGSPNRAYTHQVVTRWYRAPELLFGARM  177 (299)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCCGGGSTTTSCCCCCCCSCCCCTTCCHHHHTTCSC
T ss_pred             CHHHHHHHHHHHHHHHHHhhccceecccCCcceEEecCCCccccccCccccccCCCcccccceecChhhccHHHHccCCC
Confidence            999999999999999999999999999    999999999999999999976543   23456899999999999865 4


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      |+.++||||+||++|+|++|.+||.+.+      +.+++..|.+.+|.++...+........... ..      .....+
T Consensus       178 ~~~~~DiwSlGvil~el~~g~~pf~~~~------~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~  244 (299)
T d1ua2a_         178 YGVGVDMWAVGCILAELLLRVPFLPGDS------DLDQLTRIFETLGTPTEEQWPDMCSLPDYVT-FK------SFPGIP  244 (299)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCTTTSSSTTSSTTCCC-CC------CCCCCC
T ss_pred             CChhhhhhhcchHHHHHHhCcCCCCCCC------HHHHHHHHHHhcCCCChhhccchhccchhhh-hc------cCCCCC
Confidence            8999999999999999999999998665      7889999999999887665433221111100 00      000000


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCCCCC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQLREP  302 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~~~~  302 (358)
                      .       .......++++.+||.+||++||++||||+|+|+||||++.+.+..+
T Consensus       245 ~-------~~~~~~~s~~~~dll~~~L~~dP~~R~sa~e~L~Hp~f~~~p~p~~~  292 (299)
T d1ua2a_         245 L-------HHIFSAAGDDLLDLIQGLFLFNPCARITATQALKMKYFSNRPGPTPG  292 (299)
T ss_dssp             H-------HHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTSGGGTSSSCCCCS
T ss_pred             h-------HHhcccCCHHHHHHHHHHccCChhhCcCHHHHhCCHhhCCCCCCCCC
Confidence            0       01123446789999999999999999999999999999987654443

>d1a06a_ d.144.1.7 (A:) Calmodulin-dependent protein kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Calmodulin-dependent protein kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-45  Score=330.56  Aligned_cols=230  Identities=18%  Similarity=0.233  Sum_probs=170.2

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..+|+|++.........+.+.++.+...++  .|++++.+...... +..+|+|||||+||+|.+++.....+++.+
T Consensus        32 ~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l--~HpnIv~l~~~~~~-~~~~~lvmE~~~gg~L~~~l~~~~~l~e~~  108 (307)
T d1a06a_          32 RTQKLVAIKCIAKKALEGKEGSMENEIAVLHKI--KHPNIVALDDIYES-GGHLYLIMQLVSGGELFDRIVEKGFYTERD  108 (307)
T ss_dssp             TTCCEEEEEEEEC----------CHHHHHHHTC--CCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHTCSCCCHHH
T ss_pred             CCCCEEEEEEEchHHhhhHHHHHHHHHHHHHhC--CCCCCCcEEEEEEE-CCEEEEEEeccCCCcHHHhhhcccCCCHHH
Confidence            467889999998877777778888888887764  68888888776543 467899999999999999998888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----cccccc---CCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCCCCc
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAA---VDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~---~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +..++.|++.|+.|+|+.+++||    +|||+.   .++.+||+|||+|+....  ...+.+||+.|+|||++.+..|+.
T Consensus       109 ~~~~~~qi~~al~ylH~~~iiHrDiKp~Nil~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~GT~~y~APE~~~~~~~~~  188 (307)
T d1a06a_         109 ASRLIFQVLDAVKYLHDLGIVHRDLKPENLLYYSLDEDSKIMISDFGLSKMEDPGSVLSTACGTPGYVAPEVLAQKPYSK  188 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEESSSSTTCCEEECCC------------------CTTSCHHHHTTCCCCT
T ss_pred             HHHHHHHHHHHHHhhhhceeeeEEecccceeecccCCCceEEEeccceeEEccCCCeeeeeeeCccccCcHHHcCCCCCc
Confidence            99999999999999999999999    899995   478999999999976543  345668999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|++||.+..      .......+...-..+                                  
T Consensus       189 ~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~~i~~~~~~~----------------------------------  228 (307)
T d1a06a_         189 AVDCWSIGVIAYILLCGYPPFYDEN------DAKLFEQILKAEYEF----------------------------------  228 (307)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHTTCCCC----------------------------------
T ss_pred             HHHhhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHhccCCCC----------------------------------
Confidence            9999999999999999999997543      233332222110000                                  


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          ....+..+++++.+||.+||+.||++|||++|+|+||||++.
T Consensus       229 ----~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  270 (307)
T d1a06a_         229 ----DSPYWDDISDSAKDFIRHLMEKDPEKRFTCEQALQHPWIAGD  270 (307)
T ss_dssp             ----CTTTTTTSCHHHHHHHHHHSCSSGGGSCCHHHHHHSTTTTSS
T ss_pred             ----CCccccCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence                011234457889999999999999999999999999999863

>d1yhwa1 d.144.1.7 (A:249-541) pak1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: pak1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.9e-45  Score=326.47  Aligned_cols=226  Identities=17%  Similarity=0.196  Sum_probs=183.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..||+|.+...- ...++.+.++.+...+  +.|++++........ ....|+|||||+||+|.+++.. ..+++.+
T Consensus        43 ~~~~~vAvK~~~~~~-~~~~~~~~~E~~il~~--l~HpnIv~~~~~~~~-~~~~~ivmEy~~gg~L~~~~~~-~~l~~~~  117 (293)
T d1yhwa1          43 ATGQEVAIRQMNLQQ-QPKKELIINEILVMRE--NKNPNIVNYLDSYLV-GDELWVVMEYLAGGSLTDVVTE-TCMDEGQ  117 (293)
T ss_dssp             TTCCEEEEEEEEGGG-CSCHHHHHHHHHHHHH--CCCTTBCCEEEEEEE-TTEEEEEEECCTTCBHHHHHHH-SCCCHHH
T ss_pred             CCCCEEEEEEEeccc-ChHHHHHHHHHHHHHh--CCCCCEeeEeEEEEE-CCEEEEEEEecCCCcHHHHhhc-cCCCHHH
Confidence            568899999886432 2345667788777666  468888888776543 4568999999999999997754 4588999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCCCCcch
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSKYSTSA  172 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~~~~~~  172 (358)
                      ++.++.|++.|+.|+|+.|++||    +|||++.++.+||+|||+|+....   .....+||+.|+|||++.+..|+.++
T Consensus       118 ~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~  197 (293)
T d1yhwa1         118 IAAVCRECLQALEFLHSNQVIHRDIKSDNILLGMDGSVKLTDFGFCAQITPEQSKRSTMVGTPYWMAPEVVTRKAYGPKV  197 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSTTCCBCCCCSCGGGCCHHHHSSSCBCTHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCcccCCcHHHeEECCCCcEeeccchhheeeccccccccccccCCCccChhhhcCCCCCchh
Confidence            99999999999999999999999    999999999999999999987542   34566899999999999999999999


Q ss_pred             hhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          173 DLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       173 DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||+||++|+|++|.+||.+.+      ....+..+......                                     
T Consensus       198 DiwSlGvilyemltG~~Pf~~~~------~~~~~~~~~~~~~~-------------------------------------  234 (293)
T d1yhwa1         198 DIWSLGIMAIEMIEGEPPYLNEN------PLRALYLIATNGTP-------------------------------------  234 (293)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHHHCSC-------------------------------------
T ss_pred             ceehHhHHHHHHhhCCCCCCCCC------HHHHHHHHHhCCCC-------------------------------------
Confidence            99999999999999999997544      33333333221100                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                        ....+..+++.+.+||.+||+.||++|||++|+|+||||+.
T Consensus       235 --~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~Hp~~~~  275 (293)
T d1yhwa1         235 --ELQNPEKLSAIFRDFLNRCLDMDVEKRGSAKELLQHQFLKI  275 (293)
T ss_dssp             --CCSSGGGSCHHHHHHHHHHTCSSTTTSCCHHHHTTCGGGGG
T ss_pred             --CCCCcccCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCC
Confidence              11234456789999999999999999999999999999975

>d1s9ja_ d.144.1.7 (A:) Dual specificity mitogen-activated protein kinase kinase 1, Mek1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Dual specificity mitogen-activated protein kinase kinase 1, Mek1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-46  Score=339.60  Aligned_cols=263  Identities=16%  Similarity=0.148  Sum_probs=186.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..||+|.+........+.++.++.+...+  ..|++++...+.... ...+|+|||||+||+|.+++.....+++..
T Consensus        29 ~~~~~vAiK~i~~~~~~~~~~~~~~Ei~il~~--l~HpnIv~l~~~~~~-~~~~~iVmEy~~gg~L~~~l~~~~~l~~~~  105 (322)
T d1s9ja_          29 PSGLVMARKLIHLEIKPAIRNQIIRELQVLHE--CNSPYIVGFYGAFYS-DGEISICMEHMDGGSLDQVLKKAGRIPEQI  105 (322)
T ss_dssp             TTTEEEEEEEEECCCCTTHHHHHHHHGGGGGG--CCCTTBCCEEEEEEC-SSEEEEEEECCTTEEHHHHHHHHSSCCHHH
T ss_pred             CCCcEEEEEEEChhhCHHHHHHHHHHHHHHHh--CCCCCCCcEEEEEEE-CCEEEEEEEcCCCCcHHHHHhhcCCCCHHH
Confidence            56788999999887777777888888777666  467888888876553 457899999999999999998888899999


Q ss_pred             hhHHHHhhhhccccccC-CCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCCCCcchh
Q 045353          100 RDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      +..++.|++.|+.|+|+ ++|+||    +|||++.++.+||+|||+|+.... ..++.+||+.|+|||++.+..|+.++|
T Consensus       106 ~~~~~~qil~aL~yLH~~~~IiHRDiKP~NILl~~~~~vkl~DFGla~~~~~~~~~~~~GT~~Y~APEvl~~~~y~~~~D  185 (322)
T d1s9ja_         106 LGKVSIAVIKGLTYLREKHKIMHRDVKPSNILVNSRGEIKLCDFGVSGQLIDSMANSFVGTRSYMSPERLQGTHYSVQSD  185 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCCSCCSGGGEEECTTCCEEECCCCCCHHHHHHTC---CCSSCCCCHHHHHCSCCCTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCEEccccCHHHeeECCCCCEEEeeCCCccccCCCccccccCCccccCchHHcCCCCCcHHH
Confidence            99999999999999997 599999    999999999999999999976543 345679999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC---CCh-hhhhccCCchhhhhccCCcch
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR---YSR-DFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      |||+||++|+|++|+.||.+.+.     ....+..+....+...........   ... ..............     ..
T Consensus       186 iWSlGvil~ell~G~~Pf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  255 (322)
T d1s9ja_         186 IWSMGLSLVEMAVGRYPIPPPDA-----KELELMFGCQVEGDAAETPPRPRTPGRPLSSYGMDSRPPMAIFEL-----LD  255 (322)
T ss_dssp             HHHHHHHHHHHHHSSCCSSCCCT-----THHHHHC------------------------------CCCCHHHH-----HH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCH-----HHHHHHHHHHhcCCcccCCcccccccccccccccccccchhHHHH-----Hh
Confidence            99999999999999999986542     233333333333322211100000   000 00000000000000     00


Q ss_pred             hhHHhh-hcC-ChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEK-YDF-NERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~-~~~-~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                      ...... ... ....+.++.+||.+||++||.+||||+|+|+||||+.
T Consensus       256 ~~~~~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~ta~e~L~Hpf~~~  303 (322)
T d1s9ja_         256 YIVNEPPPKLPSGVFSLEFQDFVNKCLIKNPAERADLKQLMVHAFIKR  303 (322)
T ss_dssp             HHHTSCCCCCCBTTBCHHHHHHHHHHTCSSTTTSCCHHHHHTSHHHHH
T ss_pred             hhhccCCccCccccCCHHHHHHHHHHcCCChhHCcCHHHHhhCHhhCc
Confidence            000000 001 1234788999999999999999999999999999975

>d1t4ha_ d.144.1.7 (A:) Protein kinase wnk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase wnk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-45  Score=320.84  Aligned_cols=226  Identities=15%  Similarity=0.186  Sum_probs=181.3

Q ss_pred             ccCcccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCccccccccccc
Q 045353           20 ESSASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        20 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      .+|..||+|.+.. ..++..++++.++.+...+  +.|++++.+.+...   .....+|+|||||+||+|.+++.....+
T Consensus        32 ~~~~~va~K~i~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~~~~~~~~~~~~~~~~~ivmE~~~~g~L~~~l~~~~~~  109 (270)
T d1t4ha_          32 ETTVEVAWCELQDRKLTKSERQRFKEEAEMLKG--LQHPNIVRFYDSWESTVKGKKCIVLVTELMTSGTLKTYLKRFKVM  109 (270)
T ss_dssp             TTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTT--CCCTTBCCEEEEEEEESSSCEEEEEEEECCCSCBHHHHHHHHSSC
T ss_pred             CCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHh--CCCCCeeeEEEEEeeccccCCEEEEEEeCCCCCcHHHHHhccccc
Confidence            4577889998765 4567777888888888776  46888888876532   3345689999999999999999888889


Q ss_pred             ChhhhhHHHHhhhhccccccCCC--CCCc----cccccc-CCCcEEEEecCCceecCCC-CCCCccCCCcchhHHHhCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPS--RATR----KNLLAA-VDVQCKLVDFGNACWTHKQ-FTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~--~~hr----~NILl~-~~~~vkL~DFG~a~~~~~~-~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      ++..+..++.|++.|+.|+|+.+  ++||    +|||++ .++.+||+|||+|+..... ....+||+.|+|||++.+ .
T Consensus       110 ~~~~~~~~~~qi~~gl~yLH~~~~~IiHrDiKp~NILl~~~~~~~Kl~DFGla~~~~~~~~~~~~GT~~Y~aPE~~~~-~  188 (270)
T d1t4ha_         110 KIKVLRSWCRQILKGLQFLHTRTPPIIHRDLKCDNIFITGPTGSVKIGDLGLATLKRASFAKAVIGTPEFMAPEMYEE-K  188 (270)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTSSSCCCCSCCCGGGEEESSTTSCEEECCTTGGGGCCTTSBEESCSSCCCCCGGGGGT-C
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCCCEEeCCcChhhceeeCCCCCEEEeecCcceeccCCccCCcccCccccCHHHhCC-C
Confidence            99999999999999999999998  9999    999997 4789999999999865543 445689999999999876 5


Q ss_pred             CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhC-CCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLG-MMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      |+.++|||||||++|+|++|+.||.+..      ....+..  .+.. ..|.                            
T Consensus       189 ~~~~~DIwSlGvilyel~~g~~Pf~~~~------~~~~~~~--~i~~~~~~~----------------------------  232 (270)
T d1t4ha_         189 YDESVDVYAFGMCMLEMATSEYPYSECQ------NAAQIYR--RVTSGVKPA----------------------------  232 (270)
T ss_dssp             CCTHHHHHHHHHHHHHHHHSSCTTTTCS------SHHHHHH--HHTTTCCCG----------------------------
T ss_pred             CCCcCchhhHHHHHHHHHHCCCCCCCcc------cHHHHHH--HHHcCCCCc----------------------------
Confidence            9999999999999999999999996443      2222211  1111 1111                            


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMS  294 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~  294 (358)
                                .++...++++.+||.+||+.||++|||++|+|+||||+
T Consensus       233 ----------~~~~~~~~~~~~li~~~l~~dp~~R~s~~ell~Hp~fk  270 (270)
T d1t4ha_         233 ----------SFDKVAIPEVKEIIEGCIRQNKDERYSIKDLLNHAFFQ  270 (270)
T ss_dssp             ----------GGGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGC
T ss_pred             ----------ccCccCCHHHHHHHHHHccCCHhHCcCHHHHhCCcccC
Confidence                      12233467899999999999999999999999999995

>d1uu3a_ d.144.1.7 (A:) 3-phosphoinositide dependent protein kinase-1 Pdk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: 3-phosphoinositide dependent protein kinase-1 Pdk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.3e-45  Score=326.33  Aligned_cols=226  Identities=18%  Similarity=0.201  Sum_probs=184.1

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  .++....+.++.+...+  +.|++++.+...... +..+|+|||||+||+|.+++.....+++
T Consensus        31 ~~~~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~-~~~~~ivmEy~~gg~L~~~~~~~~~l~e  107 (288)
T d1uu3a_          31 ATSREYAIKILEKRHIIKENKVPYVTRERDVMSR--LDHPFFVKLYFTFQD-DEKLYFGLSYAKNGELLKYIRKIGSFDE  107 (288)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHH--CCSTTBCCEEEEEEC-SSEEEEEECCCTTEEHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEehHHccCHHHHHHHHHHHHHHHH--cCCCCeeEEEEEEEE-CCEEEEEEEccCCCCHHHhhhccCCCCH
Confidence            467889999987543  34455667777777666  467888888766543 4678999999999999999998888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||+++++.+||+|||+|+....     .....+||+.|+|||++.+..|
T Consensus       108 ~~~~~~~~qi~~al~ylH~~~iiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~GT~~Y~APE~~~~~~~  187 (288)
T d1uu3a_         108 TCTRFYTAEIVSALEYLHGKGIIHRDLKPENILLNEDMHIQITDFGTAKVLSPESKQARANSFVGTAQYVSPELLTEKSA  187 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECC----------CCCCGGGCCHHHHHTCCC
T ss_pred             HHHHHHHHHHHHHHHhhccccEEcCcCCccccccCCCceEEecccccceecccCCcccccccccCCccccCceeeccCCC
Confidence            9999999999999999999999999    999999999999999999987542     2345689999999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|.+||.+.+      .......+.                                      
T Consensus       188 ~~~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~~i~--------------------------------------  223 (288)
T d1uu3a_         188 CKSSDLWALGCIIYQLVAGLPPFRAGN------EYLIFQKII--------------------------------------  223 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH--------------------------------------
T ss_pred             CcccceehhhHHHHHHhhCCCCCCCcC------HHHHHHHHH--------------------------------------
Confidence            999999999999999999999997543      233322221                                      


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHH------HhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQ------CLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~e------lL~hpwf~~~  296 (358)
                          ...+.++..+++++.+||.+||+.||++|||++|      +++||||++-
T Consensus       224 ----~~~~~~p~~~s~~~~~li~~~L~~dP~~R~t~~e~~~~~~i~~Hpff~~i  273 (288)
T d1uu3a_         224 ----KLEYDFPEKFFPKARDLVEKLLVLDATKRLGCEEMEGYGPLKAHPFFESV  273 (288)
T ss_dssp             ----TTCCCCCTTCCHHHHHHHHTTSCSSGGGSTTSGGGTCHHHHHTSGGGTTC
T ss_pred             ----cCCCCCCccCCHHHHHHHHHHccCCHhHCcCHHHHcCCHHHHcCCccCCC
Confidence                1122345556789999999999999999999988      5889999874

>d2jfla1 d.144.1.7 (A:21-308) STE20-like serine/threonine-protein kinase, SLK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: STE20-like serine/threonine-protein kinase, SLK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-44  Score=322.80  Aligned_cols=227  Identities=19%  Similarity=0.189  Sum_probs=182.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .+|..+|+|.+... +....+++.++.+...+  +.|++++.+...... ...+|+|||||+||+|.+++.. ...+++.
T Consensus        35 ~~~~~vAvK~i~~~-~~~~~~~~~~E~~il~~--l~HpnIv~l~~~~~~-~~~~~lvmEy~~~g~L~~~~~~~~~~l~e~  110 (288)
T d2jfla1          35 ETSVLAAAKVIDTK-SEEELEDYMVEIDILAS--CDHPNIVKLLDAFYY-ENNLWILIEFCAGGAVDAVMLELERPLTES  110 (288)
T ss_dssp             TTCCEEEEEEEECS-SSGGGGGTHHHHHHHHH--CCCTTBCCEEEEEEE-TTEEEEEEECCTTEEHHHHHHHHTSCCCHH
T ss_pred             CCCeEEEEEEECcC-CHHHHHHHHHHHHHHHh--CCCCCCCeEEEEEee-CCeEEEEEecCCCCcHHHHHHhcCCCCCHH
Confidence            46778999998765 44556778888887776  468888888776543 4578999999999999998764 4568999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHh-----CC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLL-----GS  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~-----~~  166 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....   ...+.+||+.|+|||++.     +.
T Consensus       111 ~~~~i~~qi~~gL~ylH~~~ivHrDiKp~NIll~~~~~~Kl~DFG~a~~~~~~~~~~~~~~Gt~~y~APE~l~~~~~~~~  190 (288)
T d2jfla1         111 QIQVVCKQTLDALNYLHDNKIIHRDLKAGNILFTLDGDIKLADFGVSAKNTRTIQRRDSFIGTPYWMAPEVVMCETSKDR  190 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECHHHHHHHTCCCSCCTTCCHHHHTTCSTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHCCEEEeecChhheeECCCCCEEEEechhhhccCCCcccccccccccccCCHHHHhhcccCCC
Confidence            999999999999999999999999    999999999999999999976542   245678999999999995     34


Q ss_pred             CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          167 KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      .|+.++|||||||++|+|++|++||.+.+      ..+.+..+..  +.+|                             
T Consensus       191 ~y~~k~DiwSlGvilyemltg~~Pf~~~~------~~~~~~~i~~--~~~~-----------------------------  233 (288)
T d2jfla1         191 PYDYKADVWSLGITLIEMAEIEPPHHELN------PMRVLLKIAK--SEPP-----------------------------  233 (288)
T ss_dssp             STTTHHHHHHHHHHHHHHHHSSCTTTTSC------GGGHHHHHHH--SCCC-----------------------------
T ss_pred             CCChhhhHHHHHHHHHHHhhCCCCCCCCC------HHHHHHHHHc--CCCC-----------------------------
Confidence            58999999999999999999999997554      2222222221  1110                             


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                              ....+...++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       234 --------~~~~~~~~s~~~~~li~~~L~~dp~~R~t~~ell~hp~~~~  274 (288)
T d2jfla1         234 --------TLAQPSRWSSNFKDFLKKCLEKNVDARWTTSQLLQHPFVTV  274 (288)
T ss_dssp             --------CCSSGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTTSGGGCC
T ss_pred             --------CCCccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCC
Confidence                    11223455789999999999999999999999999999975

>d1koaa2 d.144.1.7 (A:5915-6264) Twitchin, kinase domain {Caenorhabditis elegans, pjk4 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: Caenorhabditis elegans, pjk4 [TaxId: 6239]

Probab=100.00  E-value=4.9e-44  Score=327.19  Aligned_cols=232  Identities=18%  Similarity=0.238  Sum_probs=187.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~~~   98 (358)
                      .+|..||+|.+.... ...++.++++.+...++  .|++++.+..... ....+|+|||||+||+|.+++. ....+++.
T Consensus        49 ~~g~~vAvK~i~~~~-~~~~~~~~~E~~il~~l--~HpnIv~~~~~~~-~~~~~~ivmE~~~gg~L~~~l~~~~~~l~e~  124 (350)
T d1koaa2          49 ATGNNFAAKFVMTPH-ESDKETVRKEIQTMSVL--RHPTLVNLHDAFE-DDNEMVMIYEFMSGGELFEKVADEHNKMSED  124 (350)
T ss_dssp             TTTEEEEEEEECCCS-HHHHHHHHHHHHHHHHT--CCTTBCCEEEEEE-ETTEEEEEECCCCSCBHHHHHTCTTSCBCHH
T ss_pred             CCCCEEEEEEEcccc-hhhHHHHHHHHHHHHhC--CCCCCCcEEEEEE-ECCEEEEEEEcCCCCCHHHHHHhhcCCCCHH
Confidence            468899999987653 34566778888777664  6788888877654 3567899999999999999885 44578999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccC--CCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV--DVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~--~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.  ++.+||+|||+|+.....  ....+||+.|||||++.+..|+.
T Consensus       125 ~~~~i~~qi~~aL~ylH~~~iiHrDiKp~NIll~~~~~~~vkL~DFG~a~~~~~~~~~~~~~gT~~Y~aPEv~~~~~~~~  204 (350)
T d1koaa2         125 EAVEYMRQVCKGLCHMHENNYVHLDLKPENIMFTTKRSNELKLIDFGLTAHLDPKQSVKVTTGTAEFAAPEVAEGKPVGY  204 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTSCCEEECCCTTCEECCTTSCEEEECSCTTTCCHHHHHTCCBCH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCeeeeechhHeeeccCCCCeEEEeecchheecccccccceecCcccccCHHHHcCCCCCh
Confidence            999999999999999999999999    9999964  588999999999876543  33468999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|+.||.+.+      ..+.+..+...-..++.                                
T Consensus       205 ~~DiwSlGvilyell~G~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------  246 (350)
T d1koaa2         205 YTDMWSVGVLSYILLSGLSPFGGEN------DDETLRNVKSCDWNMDD--------------------------------  246 (350)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCSCC--------------------------------
T ss_pred             hHhhhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCc--------------------------------
Confidence            9999999999999999999997654      44444444332221111                                


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                            .....+++++.+||.+||++||++|||++|+|+||||+....+
T Consensus       247 ------~~~~~~s~~~~~li~~~L~~dP~~R~t~~eil~hp~~~~~~~~  289 (350)
T d1koaa2         247 ------SAFSGISEDGKDFIRKLLLADPNTRMTIHQALEHPWLTPGNAP  289 (350)
T ss_dssp             ------GGGGGCCHHHHHHHHHHCCSSGGGSCCHHHHHHSTTTSCTTCC
T ss_pred             ------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCCCCC
Confidence                  1123457789999999999999999999999999999976443

>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.7e-44  Score=323.80  Aligned_cols=226  Identities=16%  Similarity=0.174  Sum_probs=189.7

Q ss_pred             ccCcccccccccCccch--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLTK--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++......  ...+++.++++...+  +.|++++.+..... ....+|+|||||+||+|..++.......+
T Consensus        27 ~~g~~vAvK~i~~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~~~~~~~-~~~~~~ivmE~~~gg~l~~~~~~~~~~~~  103 (316)
T d1fota_          27 HNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSI--VTHPFIIRMWGTFQ-DAQQIFMIMDYIEGGELFSLLRKSQRFPN  103 (316)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS--CCBTTBCCEEEEEE-CSSEEEEEECCCCSCBHHHHHHHTSSCCH
T ss_pred             CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHh--ccCcChhheeeeEe-eCCeeeeEeeecCCccccccccccccccc
Confidence            56889999998765432  334566677666655  46888888887655 35688999999999999999998888899


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..++.++.|++.|+.|+|+.+++||    +|||++.+|.+||+|||+|+.......+.+||+.|+|||++.+..|+.++|
T Consensus       104 ~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NILl~~~g~vkL~DFG~a~~~~~~~~~~~Gt~~Y~APE~l~~~~y~~~~D  183 (316)
T d1fota_         104 PVAKFYAAEVCLALEYLHSKDIIYRDLKPENILLDKNGHIKITDFGFAKYVPDVTYTLCGTPDYIAPEVVSTKPYNKSID  183 (316)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTSCEEECCCSSCEECSSCBCCCCSCTTTCCHHHHTTCCBCTTHH
T ss_pred             cHHHHHHHHHHHhhhhhccCcEEccccCchheeEcCCCCEEEecCccceEeccccccccCcccccCHHHHcCCCCCchhh
Confidence            9999999999999999999999999    999999999999999999999888778889999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|+.||.+.+      ..+....+..                                          
T Consensus       184 iwSlGvilyemltG~~Pf~~~~------~~~~~~~i~~------------------------------------------  215 (316)
T d1fota_         184 WWSFGILIYEMLAGYTPFYDSN------TMKTYEKILN------------------------------------------  215 (316)
T ss_dssp             HHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHH------------------------------------------
T ss_pred             ccccchhHHHHHhCCCCCCCcC------HHHHHHHHHc------------------------------------------
Confidence            9999999999999999997544      2233222221                                          


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                      ....++...++++.++|.+||+.||.+|+     |++++|+||||++-
T Consensus       216 ~~~~~p~~~s~~~~~li~~~L~~dp~~R~~~~r~t~~~il~Hp~f~~i  263 (316)
T d1fota_         216 AELRFPPFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKNHPWFKEV  263 (316)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHTSGGGSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHhhhCHHhccccchhhHHHHHcCcccccC
Confidence            12234455678899999999999999996     99999999999874

>d1koba_ d.144.1.7 (A:) Twitchin, kinase domain {California sea hare (Aplysia californica), twk43 [TaxId: 6500]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Twitchin, kinase domain
species: California sea hare (Aplysia californica), twk43 [TaxId: 6500]

Probab=100.00  E-value=8.6e-44  Score=325.79  Aligned_cols=229  Identities=17%  Similarity=0.216  Sum_probs=186.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .+|..+|+|++...... .++.+.++.+...+  +.|++++.+.+... ....+|||||||+||+|.+++... ..+++.
T Consensus        52 ~~~~~vAiK~i~~~~~~-~~~~~~~Ei~il~~--l~HpnIv~~~~~~~-~~~~~~ivmE~~~gg~L~~~~~~~~~~l~e~  127 (352)
T d1koba_          52 ATGRVFVAKFINTPYPL-DKYTVKNEISIMNQ--LHHPKLINLHDAFE-DKYEMVLILEFLSGGELFDRIAAEDYKMSEA  127 (352)
T ss_dssp             TTCCEEEEEEEECCSHH-HHHHHHHHHHHHTT--CCSTTBCCEEEEEE-CSSEEEEEEECCCCCBHHHHTTCTTCCBCHH
T ss_pred             CCCCEEEEEEECCcchh-HHHHHHHHHHHHHh--CCCCCCCcEEEEEE-ECCEEEEEEEcCCCChHHHHHHhcCCCCCHH
Confidence            56889999998765533 35667777777666  46888888877654 456789999999999999877654 468999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----cccccc--CCCcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAA--VDVQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~--~~~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.|++.|+.|+|+.|++||    +|||++  .++.+||+|||+|......  ....+||+.|+|||++.+..|+.
T Consensus       128 ~~~~i~~qi~~aL~ylH~~~iiHRDiKp~NILl~~~~~~~vkL~DFGla~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  207 (352)
T d1koba_         128 EVINYMRQACEGLKHMHEHSIVHLDIKPENIMCETKKASSVKIIDFGLATKLNPDEIVKVTTATAEFAAPEIVDREPVGF  207 (352)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSTTCCCEEECCCTTCEECCTTSCEEEECSSGGGCCHHHHTTCCBCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCeeecccccccccccccCCCeEEEeecccceecCCCCceeeccCcccccCHHHHcCCCCCC
Confidence            999999999999999999999999    999998  5789999999999876543  34468999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|++||.+.+      ....+..+......+|.                                
T Consensus       208 ~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------------  249 (352)
T d1koba_         208 YTDMWAIGVLGYVLLSGLSPFAGED------DLETLQNVKRCDWEFDE--------------------------------  249 (352)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSCCSS------HHHHHHHHHHCCCCCCS--------------------------------
T ss_pred             ccchHHHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCCc--------------------------------
Confidence            9999999999999999999997654      34444444332221111                                


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            ..+..+++++.+||.+||++||.+|||++|+|+||||+..
T Consensus       250 ------~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~Hp~~~~~  289 (352)
T d1koba_         250 ------DAFSSVSPEAKDFIKNLLQKEPRKRLTVHDALEHPWLKGD  289 (352)
T ss_dssp             ------STTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHTSTTTSSC
T ss_pred             ------ccccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhCCC
Confidence                  1223457889999999999999999999999999999864

>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine-protein kinase Nek2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-44  Score=318.06  Aligned_cols=225  Identities=17%  Similarity=0.209  Sum_probs=172.2

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCC-CCCCCCCcccccCCCCCccccccc----cc
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-PSSPDNFSVDTIPNGVSVEERQND----SV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iv~e~~~gg~L~~~~~~----~~   93 (358)
                      .+|..+|+|.+... .++..+..+.++.+...+  +.|++++.+.+... ..+..+|||||||+||+|.+++..    ..
T Consensus        27 ~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~--l~HpnIv~~~~~~~~~~~~~~~ivmEy~~~g~L~~~i~~~~~~~~  104 (269)
T d2java1          27 SDGKILVWKELDYGSMTEAEKQMLVSEVNLLRE--LKHPNIVRYYDRIIDRTNTTLYIVMEYCEGGDLASVITKGTKERQ  104 (269)
T ss_dssp             TTCCEEEEEEECCTTSCHHHHHHHHHHHHHTTS--CCCTTBCCEEEEEEC----CEEEEEECCTTEEHHHHHHHHHHHTC
T ss_pred             CCCCEEEEEEEChhhCCHHHHHHHHHHHHHHHH--CCCCCEeeEEEEEEeCCCCEEEEEEecCCCCcHHHHHHhccccCC
Confidence            56788999988654 466667777777777666  46888888877543 345678999999999999998863    34


Q ss_pred             ccChhhhhHHHHhhhhccccccCCC-----CCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhH
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPS-----RATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPE  161 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~-----~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE  161 (358)
                      .+++..+..++.|++.|+.|+|+.+     ++||    +|||++.++.+||+|||+|+.....   ....+||+.|+|||
T Consensus       105 ~l~e~~~~~i~~qi~~al~ylH~~~~~~~~IiHrDiKp~NIll~~~~~vkl~DFG~a~~~~~~~~~~~~~~gt~~Y~APE  184 (269)
T d2java1         105 YLDEEFVLRVMTQLTLALKECHRRSDGGHTVLHRDLKPANVFLDGKQNVKLGDFGLARILNHDTSFAKAFVGTPYYMSPE  184 (269)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHCC---------CCGGGEEECTTSCEEECCHHHHHHC-----------CCCSCCCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhcCCCCCEEeCcCchhhcCcCCCCcEEEeeccceeecccCCCccccCCCCcccCCHH
Confidence            6889999999999999999999865     8999    9999999999999999999765432   34568999999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      ++.+..|+.++|||||||++|+|++|++||.+.+      ..+....+..  +..                         
T Consensus       185 ~l~~~~~~~~~DIwSlGvilyel~tg~~Pf~~~~------~~~~~~~i~~--~~~-------------------------  231 (269)
T d2java1         185 QMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFS------QKELAGKIRE--GKF-------------------------  231 (269)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHH--TCC-------------------------
T ss_pred             HHcCCCCChHHHHHhhCHHHHHHhhCCCCCCCCC------HHHHHHHHHc--CCC-------------------------
Confidence            9999999999999999999999999999997544      2333322221  110                         


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCc
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWM  293 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf  293 (358)
                                    ...+...++++.+||.+||+.||.+|||++|+|+|||+
T Consensus       232 --------------~~~~~~~s~~l~~li~~~L~~dp~~Rps~~ell~hp~i  269 (269)
T d2java1         232 --------------RRIPYRYSDELNEIITRMLNLKDYHRPSVEEILENPLI  269 (269)
T ss_dssp             --------------CCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHTSTTC
T ss_pred             --------------CCCCcccCHHHHHHHHHHcCCChhHCcCHHHHHhCCcC
Confidence                          01234457889999999999999999999999999996

>d1o6la_ d.144.1.7 (A:) Pkb kinase (Akt-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Pkb kinase (Akt-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-44  Score=324.93  Aligned_cols=225  Identities=17%  Similarity=0.211  Sum_probs=186.9

Q ss_pred             ccCcccccccccCcc--chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDL--TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++....  ..+..+.+.++.+....  ..|++++.+...... ...+|+|||||+||+|.+++.....+++
T Consensus        28 ~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~--l~hp~Iv~l~~~~~~-~~~~~iv~ey~~gg~L~~~~~~~~~~~e  104 (337)
T d1o6la_          28 ATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQN--TRHPFLTALKYAFQT-HDRLCFVMEYANGGELFFHLSRERVFTE  104 (337)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHS--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSCCCH
T ss_pred             CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHh--CCCCCEEEEEeeecc-ccccccceeccCCCchhhhhhcccCCcH
Confidence            568889999987654  33445667777776665  467888888776654 4578999999999999999998889999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ..++.++.|++.|+.|+|+.+++||    +|||++.+|.+||+|||+|+...   ......+||+.|+|||++.+..|+.
T Consensus       105 ~~~~~~~~qil~al~ylH~~~iiHRDlKP~NILl~~~g~vkl~DFG~a~~~~~~~~~~~~~~GT~~Y~aPE~~~~~~y~~  184 (337)
T d1o6la_         105 ERARFYGAEIVSALEYLHSRDVVYRDIKLENLMLDKDGHIKITDFGLCKEGISDGATMKTFCGTPEYLAPEVLEDNDYGR  184 (337)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCSCCTTCCBCCCEECGGGCCGGGGSSSCBCT
T ss_pred             HHHHHHHHHHhhhhhhhhhcCccccccCHHHeEecCCCCEEEeecccccccccCCcccccceeCHHHhhhhhccCCCCCh
Confidence            9999999999999999999999999    99999999999999999997643   2345679999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|+|++|++||.+.+      .......+.                                        
T Consensus       185 ~~DiwSlGvilyeml~G~~pf~~~~------~~~~~~~i~----------------------------------------  218 (337)
T d1o6la_         185 AVDWWGLGVVMYEMMCGRLPFYNQD------HERLFELIL----------------------------------------  218 (337)
T ss_dssp             THHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH----------------------------------------
T ss_pred             hhcccchhhHHHHHHHCCCCCCCcC------HHHHHHHHh----------------------------------------
Confidence            9999999999999999999997654      222222221                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~  295 (358)
                        .....++..+++++.+||.+||++||.+|+     |++|+++||||++
T Consensus       219 --~~~~~~p~~~s~~~~dli~~~L~~dP~~R~~~~~~~~~eil~Hp~f~~  266 (337)
T d1o6la_         219 --MEEIRFPRTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVMEHRFFLS  266 (337)
T ss_dssp             --HCCCCCCTTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHTSGGGTT
T ss_pred             --cCCCCCCccCCHHHHHHHHhhccCCchhhcccccccHHHHHcCccccc
Confidence              122345566788999999999999999999     4999999999986

>d1jksa_ d.144.1.7 (A:) Death-associated protein kinase, Dap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Death-associated protein kinase, Dap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-43  Score=315.75  Aligned_cols=230  Identities=18%  Similarity=0.222  Sum_probs=185.8

Q ss_pred             ccCcccccccccCccchh-----hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKN-----QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|++.......     .++.+.++.+...++  .|++++...+.... ...+|||||||+||+|.+++.....
T Consensus        33 ~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l--~HpnIv~~~~~~~~-~~~~~iv~E~~~gg~L~~~i~~~~~  109 (293)
T d1jksa_          33 STGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEI--QHPNVITLHEVYEN-KTDVILILELVAGGELFDFLAEKES  109 (293)
T ss_dssp             TTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHC--CCTTBCCEEEEEEC-SSEEEEEEECCCSCBHHHHHHHHSS
T ss_pred             CCCCEEEEEEEEhhhcchhhhhHHHHHHHHHHHHHHhC--CCCCCCcEEEEEEE-CCEEEEEEEcCCCccccchhccccc
Confidence            568899999986544332     356677887777764  67888888776543 4678999999999999999988888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC----cEEEEecCCceecC--CCCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV----QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~----~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.++..++.|++.|+.|+|+.+++||    +|||++.++    .+||+|||+|....  ......+||+.|+|||++.
T Consensus       110 l~~~~~~~~~~qi~~al~yLH~~~ivHrDiKp~Nill~~~~~~~~~vkl~DfG~a~~~~~~~~~~~~~~t~~y~APE~~~  189 (293)
T d1jksa_         110 LTEEEATEFLKQILNGVYYLHSLQIAHFDLKPENIMLLDRNVPKPRIKIIDFGLAHKIDFGNEFKNIFGTPEFVAPEIVN  189 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSSSSCCEEECCCTTCEECTTSCBCSCCCCCGGGCCHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcceeecccccceEEEecCCCcccceEecchhhhhhcCCCccccccCCCCcccCHHHHc
Confidence            9999999999999999999999999999    999998776    59999999998764  3355668999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..|+.++||||+||++|+|++|+.||.+.+      ..+.+..+...-...+.                          
T Consensus       190 ~~~~~~~~DiwSlGvilyell~g~~Pf~~~~------~~~~~~~i~~~~~~~~~--------------------------  237 (293)
T d1jksa_         190 YEPLGLEADMWSIGVITYILLSGASPFLGDT------KQETLANVSAVNYEFED--------------------------  237 (293)
T ss_dssp             TCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHTTCCCCCH--------------------------
T ss_pred             CCCCCCcccchhhhHHHHHHHcCCCCCCCCC------HHHHHHHHHhcCCCCCc--------------------------
Confidence            9899999999999999999999999997654      34444333322111111                          


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                                  ..+...++.+.+||.+||+.||++|||++|+|+||||+..
T Consensus       238 ------------~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  277 (293)
T d1jksa_         238 ------------EYFSNTSALAKDFIRRLLVKDPKKRMTIQDSLQHPWIKPK  277 (293)
T ss_dssp             ------------HHHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSTTTCC-
T ss_pred             ------------hhcCCCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence                        1123346789999999999999999999999999999853

>d1u5ra_ d.144.1.7 (A:) Serine/threonine protein kinase TAO2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Serine/threonine protein kinase TAO2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.6e-43  Score=317.11  Aligned_cols=227  Identities=18%  Similarity=0.171  Sum_probs=182.6

Q ss_pred             cccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           19 TESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      ..+|..||+|.+.....  ....+++.++.+...+  +.|++++........ ...+|+|||||.||+|..++.....++
T Consensus        37 ~~~~~~vAvK~i~~~~~~~~~~~~~~~~Ei~il~~--l~HpnIv~~~~~~~~-~~~~~iv~E~~~~g~l~~~~~~~~~l~  113 (309)
T d1u5ra_          37 VRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQK--LRHPNTIQYRGCYLR-EHTAWLVMEYCLGSASDLLEVHKKPLQ  113 (309)
T ss_dssp             TTTTEEEEEEEEECCSSCHHHHHHHHHHHHHHHTT--CCCTTBCCEEEEEEE-TTEEEEEEECCSEEHHHHHHHHTSCCC
T ss_pred             CCCCcEEEEEEEchhhccCHHHHHHHHHHHHHHHH--CCCCCEeeEEEEEEE-CCEEEEEEEecCCCchHHHHHhCCCCC
Confidence            35677899999876543  3444667788777776  468888888776543 467899999999999988777777889


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhC---CCCC
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLG---SKYS  169 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~---~~~~  169 (358)
                      +.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|...... ...+||+.|||||++.+   ..|+
T Consensus       114 e~~~~~i~~qi~~aL~yLH~~~iiHrDiKp~NILl~~~~~~Kl~DFG~a~~~~~~-~~~~GT~~Y~APE~~~~~~~~~y~  192 (309)
T d1u5ra_         114 EVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPGLVKLGDFGSASIMAPA-NSFVGTPYWMAPEVILAMDEGQYD  192 (309)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCBCCCCSGGGEEEETTTEEEECCCTTCBSSSSB-CCCCSCGGGCCHHHHTTTTSCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCEeccCCCcceEEECCCCCEEEeecccccccCCC-CccccCccccCHHHHhccCCCCcC
Confidence            99999999999999999999999999    9999999999999999999876543 45689999999999975   3489


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||.+.+      ..+.+..+..  +..|.                               
T Consensus       193 ~~~DiwSlGvilyel~~g~~Pf~~~~------~~~~~~~i~~--~~~~~-------------------------------  233 (309)
T d1u5ra_         193 GKVDVWSLGITCIELAERKPPLFNMN------AMSALYHIAQ--NESPA-------------------------------  233 (309)
T ss_dssp             THHHHHHHHHHHHHHHHSSCTTTTSC------HHHHHHHHHH--SCCCC-------------------------------
T ss_pred             chhhhhhHHHHHHHHHHCCCCCCCCC------HHHHHHHHHh--CCCCC-------------------------------
Confidence            99999999999999999999997543      3333332221  11110                               


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ..+...++.+.+||.+||+.||++|||++|+|+||||..
T Consensus       234 -------~~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~Hp~~~~  272 (309)
T d1u5ra_         234 -------LQSGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKHRFVLR  272 (309)
T ss_dssp             -------CSCTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTCHHHHS
T ss_pred             -------CCCCCCCHHHHHHHHHHCcCChhHCcCHHHHHhCHHhcC
Confidence                   112234678999999999999999999999999999975

>d1rdqe_ d.144.1.7 (E:) cAMP-dependent PK, catalytic subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: cAMP-dependent PK, catalytic subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4e-43  Score=321.29  Aligned_cols=226  Identities=17%  Similarity=0.152  Sum_probs=187.8

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  .....++.++.+...+  +.|++++.+...... ....|+||||+.||+|.+++.....+++
T Consensus        64 ~~g~~~AvK~i~~~~~~~~~~~~~~~~E~~il~~--l~hpnIv~~~~~~~~-~~~~~~v~e~~~~g~l~~~l~~~~~l~e  140 (350)
T d1rdqe_          64 ESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQA--VNFPFLVKLEFSFKD-NSNLYMVMEYVAGGEMFSHLRRIGRFSE  140 (350)
T ss_dssp             TTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTT--CCCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHCCCCH
T ss_pred             CCCCEEEEEEEchHHccCHHHHHHHHHHHHHHHH--cCCCcEeeccccccc-ccccccccccccccchhhhHhhcCCCCH
Confidence            5688999999865432  2334566677766655  468888888766543 4568999999999999999988888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.........+||+.|||||++.+..|+.++|
T Consensus       141 ~~~~~i~~qi~~aL~yLH~~~iiHRDIKP~NILl~~~g~ikL~DFG~a~~~~~~~~~~~Gt~~Y~APE~~~~~~~~~~~D  220 (350)
T d1rdqe_         141 PHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLIDQQGYIQVTDFGFAKRVKGRTWTLCGTPEALAPEIILSKGYNKAVD  220 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTSCEEECCCTTCEECSSCBCCCEECGGGCCHHHHTTCCBCTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCEecCcCCHHHcccCCCCCEEeeeceeeeecccccccccCccccCCHHHHcCCCCCcccc
Confidence            9999999999999999999999999    999999999999999999998887777889999999999999999999999


Q ss_pred             hhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhHH
Q 045353          174 LWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVLV  253 (358)
Q Consensus       174 iwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (358)
                      ||||||++|+|++|++||.+.+      ....+..+..                                          
T Consensus       221 iwSlGvilyemltG~~Pf~~~~------~~~~~~~i~~------------------------------------------  252 (350)
T d1rdqe_         221 WWALGVLIYEMAAGYPPFFADQ------PIQIYEKIVS------------------------------------------  252 (350)
T ss_dssp             HHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHH------------------------------------------
T ss_pred             ccchhHHHHHHHhCCCCCCCcC------HHHHHHHHhc------------------------------------------
Confidence            9999999999999999997543      3333333321                                          


Q ss_pred             hhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCCC
Q 045353          254 EKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSAG  296 (358)
Q Consensus       254 ~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~~  296 (358)
                      ....++..+++++.+||.+||+.||.+|+     |++++++||||++.
T Consensus       253 ~~~~~p~~~s~~~~~li~~~L~~dP~kR~~~~r~t~~ell~Hp~f~~~  300 (350)
T d1rdqe_         253 GKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKNHKWFATT  300 (350)
T ss_dssp             CCCCCCTTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHTSGGGTTC
T ss_pred             CCCCCCccCCHHHHHHHHHHhhhCHHhccccccccHHHHHcCccccCC
Confidence            11233445678999999999999999995     99999999999863

>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: G-protein coupled receptor kinase 2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.9e-43  Score=320.61  Aligned_cols=232  Identities=16%  Similarity=0.164  Sum_probs=178.9

Q ss_pred             cccCcccccccccCccchhh--hHHhhHHHHHhhhh-ccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQG-CAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      ..+|..+|+|++........  ...+.++......+ ...|++++.+...... ...+|+|||||+||+|.+++.....+
T Consensus        26 ~~t~~~vAiK~i~~~~~~~~~~~~~~~~e~~~~~~l~~~~hpnIv~l~~~~~~-~~~~~ivmE~~~gg~L~~~l~~~~~~  104 (364)
T d1omwa3          26 ADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT-PDKLSFILDLMNGGDLHYHLSQHGVF  104 (364)
T ss_dssp             TTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC-SSEEEEEECCCCSCBHHHHHHHHCSC
T ss_pred             CCCCCEEEEEEEchHHcchhhHHHHHHHHHHHHHHHhcCCCCcEEEEEEEEEE-CCEEEEEEEecCCCcHHHHHHhcccc
Confidence            34688899999865432221  22223332222222 1357788887766543 45789999999999999999988889


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhC-CCCC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLG-SKYS  169 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~-~~~~  169 (358)
                      .+.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.... .....+||+.|+|||++.+ ..|+
T Consensus       105 ~e~~~~~~~~qi~~aL~ylH~~~iiHrDlKP~NILl~~~g~iKl~DFGla~~~~~~~~~~~~GT~~y~APE~~~~~~~~~  184 (364)
T d1omwa3         105 SEADMRFYAAEIILGLEHMHNRFVVYRDLKPANILLDEHGHVRISDLGLACDFSKKKPHASVGTHGYMAPEVLQKGVAYD  184 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECSSSCEEECCCTTCEECSSSCCCSCCSCGGGCCHHHHSTTCCCC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHCCccceeeccceeEEcCCCcEEEeeeceeeecCCCcccccccccccchhHHhhcCCCCC
Confidence            999999999999999999999999999    999999999999999999987653 3556689999999999975 4699


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|+.||.+.+...    ..   .+.+....                                  
T Consensus       185 ~~~DiwSlGvilyemltG~~Pf~~~~~~~----~~---~~~~~~~~----------------------------------  223 (364)
T d1omwa3         185 SSADWFSLGCMLFKLLRGHSPFRQHKTKD----KH---EIDRMTLT----------------------------------  223 (364)
T ss_dssp             THHHHHHHHHHHHHHHHSSCSSCSSCSSC----HH---HHHHHSSS----------------------------------
T ss_pred             cccchhHHHHHHHHHHhCCCCCCCCCHHH----HH---HHHHhccc----------------------------------
Confidence            99999999999999999999997654221    11   11111100                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCC-----HHHHhcCcCcCCC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPT-----AAQCLSHPWMSAG  296 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t-----a~elL~hpwf~~~  296 (358)
                          ....++..+++++.+||.+||+.||++|||     |+|+++||||++-
T Consensus       224 ----~~~~~~~~~s~~~~~li~~~L~~dP~~R~t~~~~~a~eil~Hp~f~~i  271 (364)
T d1omwa3         224 ----MAVELPDSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKESPFFRSL  271 (364)
T ss_dssp             ----CCCCCCSSSCHHHHHHHHHHTCSSTTTSTTTSSSTHHHHHTSGGGTTC
T ss_pred             ----CCCCCCCCCCHHHHHHHHHHcccCHHHhCCCcccCHHHHHcCccccCC
Confidence                112334556789999999999999999999     8999999999863

>d1xjda_ d.144.1.7 (A:) Protein kinase C, theta type {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase C, theta type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.6e-43  Score=315.75  Aligned_cols=226  Identities=20%  Similarity=0.225  Sum_probs=183.1

Q ss_pred             ccCcccccccccCccc--hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccCh
Q 045353           20 ESSASKENKSLYGDLT--KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~   97 (358)
                      .+|..+|+|++.....  +.....+.++....... ..|++++........ ...+|+|||||+||+|.+++.....+++
T Consensus        25 ~t~~~vAvK~i~k~~~~~~~~~~~~~~e~~~l~~~-~~hp~Iv~~~~~~~~-~~~~yivmEy~~~g~L~~~i~~~~~~~e  102 (320)
T d1xjda_          25 KTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLA-WEHPFLTHMFCTFQT-KENLFFVMEYLNGGDLMYHIQSCHKFDL  102 (320)
T ss_dssp             TTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHH-TTCTTBCCEEEEEEC-SSEEEEEEECCTTCBHHHHHHHHSSCCH
T ss_pred             CCCCEEEEEEEchhhccChHHHHHHHHHHHHHHHh-CCCCcEEEEEEEEcc-CCceeEEEeecCCCcHHHHhhccCCCCH
Confidence            4677899999976543  23334444554443333 578888888776544 4568999999999999999998888999


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC---CCCCCCccCCCcchhHHHhCCCCCc
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH---KQFTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~---~~~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+...   ...+..+||+.|+|||++.+..|+.
T Consensus       103 ~~~~~~~~qi~~al~ylH~~~iiHrDikp~NiL~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  182 (320)
T d1xjda_         103 SRATFYAAEIILGLQFLHSKGIVYRDLKLDNILLDKDGHIKIADFGMCKENMLGDAKTNTFCGTPDYIAPEILLGQKYNH  182 (320)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCBCCCCCGGGEEECTTSCEEECCCTTCBCCCCTTCCBCCCCSCGGGCCHHHHTTCCBCT
T ss_pred             HHHHHHHHHHHHHHHHHHhCCeeeccCcccceeecCCCceeccccchhhhcccccccccccCCCCCcCCHHHHcCCCCCc
Confidence            9999999999999999999999999    99999999999999999997643   2344568999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|+.||.+.+      .......+.                                        
T Consensus       183 ~~DiwSlGvilyemltG~~PF~~~~------~~~~~~~i~----------------------------------------  216 (320)
T d1xjda_         183 SVDWWSFGVLLYEMLIGQSPFHGQD------EEELFHSIR----------------------------------------  216 (320)
T ss_dssp             HHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHH----------------------------------------
T ss_pred             hhhhhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHH----------------------------------------
Confidence            9999999999999999999997654      333333322                                        


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH-HHhcCcCcCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA-QCLSHPWMSA  295 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~-elL~hpwf~~  295 (358)
                        .....++..+++++.+||.+||+.||++|||+. |+++||||++
T Consensus       217 --~~~~~~p~~~s~~~~dli~~~L~~dP~~R~s~~~~l~~hpff~~  260 (320)
T d1xjda_         217 --MDNPFYPRWLEKEAKDLLVKLFVREPEKRLGVRGDIRQHPLFRE  260 (320)
T ss_dssp             --HCCCCCCTTSCHHHHHHHHHHSCSSGGGSBTTBSCGGGSGGGTT
T ss_pred             --cCCCCCCccCCHHHHHHHHHhcccCCCCCcCHHHHHHhCchhcc
Confidence              112234455678899999999999999999995 8999999986

>d1phka_ d.144.1.7 (A:) gamma-subunit of glycogen phosphorylase kinase (Phk) {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: gamma-subunit of glycogen phosphorylase kinase (Phk)
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.8e-42  Score=305.78  Aligned_cols=230  Identities=18%  Similarity=0.211  Sum_probs=180.9

Q ss_pred             ccCcccccccccCccc--------hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           20 ESSASKENKSLYGDLT--------KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      .+|..+|+|++...-.        +..+.++.++.+...++ ..|++++.+..... .+..+|+|||||+||+|.+++..
T Consensus        26 ~~~~~~AvK~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l-~~hpnIv~~~~~~~-~~~~~~ivmE~~~~g~L~~~l~~  103 (277)
T d1phka_          26 PTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKV-SGHPNIIQLKDTYE-TNTFFFLVFDLMKKGELFDYLTE  103 (277)
T ss_dssp             TTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHH-TTCTTBCCEEEEEE-CSSEEEEEEECCTTCBHHHHHHH
T ss_pred             CCCCEEEEEEEecccccchhHHHHHHHHHHHHHHHHHHHHh-cCCCCeEEEEeecc-cCcceEEEEEcCCCchHHHHHHh
Confidence            4677899998765322        22334455665555554 24778887777655 45678999999999999999988


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchhHHHhC
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ...+++.+++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....  ..+..+||+.|+|||++.+
T Consensus       104 ~~~l~e~~~~~~~~qi~~al~~lH~~~ivHrDlkp~Nill~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~~PE~~~~  183 (277)
T d1phka_         104 KVTLSEKETRKIMRALLEVICALHKLNIVHRDLKPENILLDDDMNIKLTDFGFSCQLDPGEKLREVCGTPSYLAPEIIEC  183 (277)
T ss_dssp             HSSCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTCCEEECCCTTCEECCTTCCBCCCCSCGGGCCHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHcCCcccccccceEEEcCCCCeEEccchheeEccCCCceeeeeccCCCCCHHHhhc
Confidence            8889999999999999999999999999999    999999999999999999987653  3455689999999999974


Q ss_pred             ------CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchh
Q 045353          166 ------SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRH  239 (358)
Q Consensus       166 ------~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~  239 (358)
                            ..|+.++||||+||++|+|++|+.||.+.+      .......+...--.+                       
T Consensus       184 ~~~~~~~~~~~~~DiwslGvilyeml~g~~Pf~~~~------~~~~~~~i~~~~~~~-----------------------  234 (277)
T d1phka_         184 SMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWHRK------QMLMLRMIMSGNYQF-----------------------  234 (277)
T ss_dssp             HHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHTCCCC-----------------------
T ss_pred             cccccCCCCCchheEcccchhhhhhccCCCCCCCCC------HHHHHHHHHhCCCCC-----------------------
Confidence                  247889999999999999999999997544      333333332210000                       


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                                     ........++++.+||.+||+.||++|||++|+|+||||+.
T Consensus       235 ---------------~~~~~~~~s~~~~~li~~~L~~~p~~R~s~~eil~h~~~~~  275 (277)
T d1phka_         235 ---------------GSPEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALAHPFFQQ  275 (277)
T ss_dssp             ---------------CTTTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTTSGGGCT
T ss_pred             ---------------CCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHHHH
Confidence                           01122345789999999999999999999999999999974

>d1blxa_ d.144.1.7 (A:) Cyclin-dependent PK, CDK6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-42  Score=307.93  Aligned_cols=254  Identities=20%  Similarity=0.149  Sum_probs=193.6

Q ss_pred             CcccccccccCccch-hhhHHhhHHHHHhhhhc-cCCCccccccCCCC----CCCCCCCcccccCCCCCcccccc-cccc
Q 045353           22 SASKENKSLYGDLTK-NQKKKVKKKAKKAAQGC-AGTEAFDESEADSK----PSSPDNFSVDTIPNGVSVEERQN-DSVV   94 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----~~~~~~~iv~e~~~gg~L~~~~~-~~~~   94 (358)
                      +..||+|.+...... .....+.++......+. ..|++++.+.+...    .....+|++||||.||++..... ....
T Consensus        33 ~~~vAiK~i~~~~~~~~~~~~~~~E~~~l~~l~~~~HpnIv~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~  112 (305)
T d1blxa_          33 GRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRTDRETKLTLVFEHVDQDLTTYLDKVPEPG  112 (305)
T ss_dssp             TEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEECSSEEEEEEEEECCSCBHHHHHHHSCTTC
T ss_pred             CEEEEEEEEehhhccchHHHHHHHHHHHHHHHhhcCCCCcceeeeeecccccccCceEEEEEEeccCCchhhhhhccCCC
Confidence            446899998765433 33444555555444332 36778887765532    23467899999999998865443 4456


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhCCCC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      +++..++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||++....  ......+||+.|+|||++.+.+|
T Consensus       113 ~~~~~~~~~~~qi~~aL~yLH~~~ivHrDiKp~NILi~~~~~~kl~dfg~~~~~~~~~~~~~~~gT~~Y~APE~~~~~~y  192 (305)
T d1blxa_         113 VPTETIKDMMFQLLRGLDFLHSHRVVHRDLKPQNILVTSSGQIKLADFGLARIYSFQMALTSVVVTLWYRAPEVLLQSSY  192 (305)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECSCCSCCCCCGGGGGCCCCCCCTTCCHHHHTTCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCEEecCCCccEEEEcCCCCeeecchhhhhhhcccccCCCcccChhhcCcchhcCCCC
Confidence            7888999999999999999999999999    99999999999999999997654  33566799999999999999999


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|++||.+.+      +.+++..+...++.++...+................           
T Consensus       193 ~~~~DiwSlG~il~ell~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  255 (305)
T d1blxa_         193 ATPVDLWSVGCIFAEMFRRKPLFRGSS------DVDQLGKILDVIGLPGEEDWPRDVALPRQAFHSKSA-----------  255 (305)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCGGGSCTTCSSCGGGSCCCCC-----------
T ss_pred             ChhehhhchHHHHHHHHHCCCCCCCCC------HHHHHHHHHHhhCCCchhcccccccchhhhhccccc-----------
Confidence            999999999999999999999998665      788899999999988766543322111110000000           


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                          .....+....++.+.+||.+||++||++||||+|+|+||||++-
T Consensus       256 ----~~~~~~~~~~s~~~~dli~~mL~~dP~~R~sa~e~L~Hpff~~i  299 (305)
T d1blxa_         256 ----QPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALSHPYFQDL  299 (305)
T ss_dssp             ----CCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTC
T ss_pred             ----cchhhccccCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhcCc
Confidence                00112334557889999999999999999999999999999864

>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2, mapkap2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase activated protein kinase 2, mapkap2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-43  Score=321.42  Aligned_cols=226  Identities=21%  Similarity=0.241  Sum_probs=176.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCC---CCCCCCCcccccCCCCCcccccccc--cc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK---PSSPDNFSVDTIPNGVSVEERQNDS--VV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~iv~e~~~gg~L~~~~~~~--~~   94 (358)
                      .+|..+|+|++..      ...++++.+...+. ..|++++.+.+...   ..+..+|+|||||+||+|.+++...  ..
T Consensus        35 ~~~~~vAiK~i~~------~~~~~~E~~~~~~~-~~hpnIv~l~~~~~~~~~~~~~~~ivmEy~~gg~L~~~i~~~~~~~  107 (335)
T d2ozaa1          35 RTQEKFALKMLQD------CPKARREVELHWRA-SQCPHIVRIVDVYENLYAGRKCLLIVMECLDGGELFSRIQDRGDQA  107 (335)
T ss_dssp             TTCCEEEEEEEEC------SHHHHHHHHHHHHH-TTSTTBCCEEEEEEEEETTEEEEEEEEECCCSEEHHHHHHSCSCCC
T ss_pred             CCCCEEEEEEECC------cHHHHHHHHHHHHh-cCCCCCCeEEEEEeecccCCCEEEEEEECCCCCcHHHHHHhcCCCC
Confidence            5678899999753      34566676655544 36788888766543   3356789999999999999998764  36


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccC---CCcEEEEecCCceecC--CCCCCCccCCCcchhHHHhC
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV---DVQCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~---~~~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~~  165 (358)
                      +++.+++.++.|++.|+.|+|+.+++||    +|||++.   ++.+||+|||+|+...  ......+||+.|+|||++.+
T Consensus       108 l~e~~~~~i~~qi~~al~ylH~~~iiHRDiKp~NIll~~~~~~~~~Kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~~  187 (335)
T d2ozaa1         108 FTEREASEIMKSIGEAIQYLHSINIAHRDVKPENLLYTSKRPNAILKLTDFGFAKETTSHNSLTTPCYTPYYVAPEVLGP  187 (335)
T ss_dssp             EEHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEESCSSTTCCEEECCCTTCEECCCCCCCCCCSCCCSSCCCCCCCG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHcCCccccccccccccccccccccccccccceeeeccCCCccccccCCcccCCcHHHcC
Confidence            8999999999999999999999999999    9999985   4679999999997654  33556689999999999999


Q ss_pred             CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          166 SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       166 ~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      ..|+.++|||||||++|+|++|++||.+.+....      ...+....                                
T Consensus       188 ~~y~~~~DiwSlGvily~lltg~~Pf~~~~~~~~------~~~~~~~i--------------------------------  229 (335)
T d2ozaa1         188 EKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAI------SPGMKTRI--------------------------------  229 (335)
T ss_dssp             GGGSHHHHHHHHHHHHHHHTTSSCSCEETTCC--------------CC--------------------------------
T ss_pred             CCCCHHHHHHhhchhHHHHhhCCCCCCCCCHHHH------HHHHHHHH--------------------------------
Confidence            8999999999999999999999999976542211      00000000                                


Q ss_pred             CcchhhHHhhhc----CChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          246 WPMNKVLVEKYD----FNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       246 ~~~~~~~~~~~~----~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                            ....+.    ....+++++.+||.+||+.||++|||+.|+|+||||...
T Consensus       230 ------~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~R~s~~eil~hp~~~~~  278 (335)
T d2ozaa1         230 ------RMGQYEFPNPEWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNHPWIMQS  278 (335)
T ss_dssp             ------CSCSSSCCTTHHHHSCHHHHHHHHHHSCSSTTTSCCHHHHHHSHHHHTT
T ss_pred             ------hcCCCCCCCcccccCCHHHHHHHHHHccCChhHCcCHHHHHcCHHhhCC
Confidence                  000011    113457889999999999999999999999999999754

>d1cm8a_ d.144.1.7 (A:) MAP kinase p38-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9e-41  Score=306.16  Aligned_cols=257  Identities=23%  Similarity=0.271  Sum_probs=200.9

Q ss_pred             ccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCccccccccc
Q 045353           20 ESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      .+|..||+|.+... .++...+++.++.+...++  .|++++........     ....+|+||||| |++|..+.. ..
T Consensus        41 ~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l--~hpniv~l~~~~~~~~~~~~~~~~~lv~e~~-~~~l~~~~~-~~  116 (346)
T d1cm8a_          41 RTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHM--RHENVIGLLDVFTPDETLDDFTDFYLVMPFM-GTDLGKLMK-HE  116 (346)
T ss_dssp             TTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHC--CBTTBCCCSEEECSCSSTTTCCCCEEEEECC-SEEHHHHHH-HC
T ss_pred             CCCCEEEEEEEchhhcChHHHHHHHHHHHHHHhc--CCCCeeEEEEEeccCccccccceEEEEEecc-cccHHHHHH-hc
Confidence            56888999998764 3445566777888777764  67777777665433     234679999999 666766554 45


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCC-C
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      .+++..++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+......+..+||+.|+|||++.+.. +
T Consensus       117 ~l~~~~~~~~~~qi~~aL~~LH~~~IiHrDiKp~NIL~~~~~~~kl~Dfg~a~~~~~~~~~~~~t~~y~aPE~~~~~~~~  196 (346)
T d1cm8a_         117 KLGEDRIQFLVYQMLKGLRYIHAAGIIHRDLKPGNLAVNEDCELKILDFGLARQADSEMTGYVVTRWYRAPEVILNWMRY  196 (346)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCSSCCSSCSCGGGCCTHHHHTTTCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCCcccccCcchhhcccccccccccccceeccCCccccccccccccCHHHHcCCCCC
Confidence            68899999999999999999999999999    999999999999999999999988888899999999999998754 7


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|++||.+.+      ..+.+..+....+.+|...+..............    .......  
T Consensus       197 ~~~~DiwSlGvil~ell~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~--  264 (346)
T d1cm8a_         197 TQTVDIWSVGCIMAEMITGKTLFKGSD------HLDQLKEIMKVTGTPPAEFVQRLQSDEAKNYMKG----LPELEKK--  264 (346)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHTCSCHHHHHHHHH----SCCCCCC--
T ss_pred             CccchhhcchHHHHHHHHCcCCCCCCC------hHHHHHHHHhccCCCcHHHHhhhcchhhhhhhcc----CCccccc--
Confidence            999999999999999999999998665      7788899999999998876654332221100000    0000000  


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                           .........++.+.+||.+||++||++||||+|+|+||||+...
T Consensus       265 -----~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~eiL~Hp~f~~~~  308 (346)
T d1cm8a_         265 -----DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALAHPYFESLH  308 (346)
T ss_dssp             -----CGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGTTTC
T ss_pred             -----chHHhccCCCHHHHHHHHHHCcCChhHCcCHHHHhcChhhCcCC
Confidence                 00112334578899999999999999999999999999998753

>d3blha1 d.144.1.7 (A:8-325) Cell division protein kinase 9, CDK9 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cell division protein kinase 9, CDK9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.2e-41  Score=304.28  Aligned_cols=263  Identities=19%  Similarity=0.171  Sum_probs=194.1

Q ss_pred             cccCcccccccccCc-cchhhhHHhhHHHHHhhhhccCCCccccccCCCC-------CCCCCCCcccccCCCCCcccccc
Q 045353           19 TESSASKENKSLYGD-LTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK-------PSSPDNFSVDTIPNGVSVEERQN   90 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~iv~e~~~gg~L~~~~~   90 (358)
                      ..+|..||+|++... ..+...+++.++.+....+  .|++++.......       .....+|+|||||.++.+.....
T Consensus        32 ~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l--~h~nii~~~~~~~~~~~~~~~~~~~~~iv~e~~~~~~~~~~~~  109 (318)
T d3blha1          32 RKTGQKVALKKVLMENEKEGFPITALREIKILQLL--KHENVVNLIEICRTKASPYNRCKGSIYLVFDFCEHDLAGLLSN  109 (318)
T ss_dssp             TTTCCEEEEEEC----CTTSSCHHHHHHHHHHHHC--CCTTBCCEEEEEEC----------CEEEEEECCCEEHHHHHTC
T ss_pred             CCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHHh--cCCCccceEeeeecccccccccCceEEEEEeccCCCccchhhh
Confidence            357888999987554 4455667788888777664  5666666554321       22457899999999999988777


Q ss_pred             cccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-------CCCCCccCCCcch
Q 045353           91 DSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------QFTNDIQTRQYRC  159 (358)
Q Consensus        91 ~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------~~~~~~gt~~Y~a  159 (358)
                      ....+.+..++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....       .....+||+.|+|
T Consensus       110 ~~~~~~~~~~~~i~~qil~~l~~lH~~~ivHrDlKp~NILl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~gT~~Y~a  189 (318)
T d3blha1         110 VLVKFTLSEIKRVMQMLLNGLYYIHRNKILHRDMKAANVLITRDGVLKLADFGLARAFSLAKNSQPNRYTNRVVTLWYRP  189 (318)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTSCEEECCCTTCEECCC-----CCCCCSCCSCGGGCC
T ss_pred             cccccccHHHHHHHHHHHHHHHHhccCCEEecCcCchheeecCCCcEEeeecceeeecccccccccccccceecCHHHhh
Confidence            77788999999999999999999999999999    999999999999999999976442       2334589999999


Q ss_pred             hHHHhCC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCch
Q 045353          160 PEVLLGS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       160 PE~l~~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      ||++.+. .|+.++||||+||++|+|++|++||.+..      +...+..+.+.++.++............+..... ..
T Consensus       190 PE~~~~~~~~~~k~DiwSlGvil~el~~g~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  262 (318)
T d3blha1         190 PELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNT------EQHQLALISQLCGSITPEVWPNVDNYELYEKLEL-VK  262 (318)
T ss_dssp             HHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTCCCC-------C-CS
T ss_pred             HHHHcCCCCCCcHHHcccCCceeeeHhhCCCCCCCCC------HHHHHHHHHHhcCCCChhhccccchhhhhhhhcc-cc
Confidence            9999876 58999999999999999999999997654      7888899999999887765443322211111000 00


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCCC
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQL  299 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~~  299 (358)
                         ... .......     .....++.+.+||.+||++||++||||+|+|+||||+..+.+
T Consensus       263 ---~~~-~~~~~~~-----~~~~~~~~~~dLl~~mL~~dP~~R~sa~elL~Hpff~~~p~p  314 (318)
T d3blha1         263 ---GQK-RKVKDRL-----KAYVRDPYALDLIDKLLVLDPAQRIDSDDALNHDFFWSDPMP  314 (318)
T ss_dssp             ---SCC-BCHHHHH-----HHHHCCHHHHHHHHHHSCSSTTTSCCHHHHHHSGGGSSSSCC
T ss_pred             ---ccc-ccchhhh-----ccccCCHHHHHHHHHHCcCChhHCcCHHHHHcChhhccCCCC
Confidence               000 0000000     011225678899999999999999999999999999976543

>d1ob3a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {(Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: (Plasmodium falciparum) [TaxId: 5833]

Probab=100.00  E-value=2.4e-41  Score=301.95  Aligned_cols=260  Identities=20%  Similarity=0.184  Sum_probs=199.5

Q ss_pred             ccccccccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           14 TDKVVTESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      |-+....+|..+|+|.+.... .+...+++.++.+....+  .|++++.+..... .....|++|||+.|+.+..+....
T Consensus        18 Vy~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~l--~hpnIv~~~~~~~-~~~~~~i~~e~~~~~~~~~~~~~~   94 (286)
T d1ob3a_          18 VYKAQNNYGETFALKKIRLEKEDEGIPSTTIREISILKEL--KHSNIVKLYDVIH-TKKRLVLVFEHLDQDLKKLLDVCE   94 (286)
T ss_dssp             EEEEEETTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGC--CCTTBCCEEEEEE-CSSCEEEEEECCSEEHHHHHHTST
T ss_pred             EEEEEeCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHhC--CCCcEEeeeeecc-cCCceeEEEEeehhhhHHHHHhhc
Confidence            444445678889999986654 444567788888777663  6788888765554 456789999999999999988888


Q ss_pred             cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHhC
Q 045353           93 VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        93 ~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~~  165 (358)
                      ..+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|......   ....+|++.|+|||++.+
T Consensus        95 ~~l~~~~~~~i~~qi~~~L~~LH~~~IvHrDiKp~NIll~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~~y~~pE~~~~  174 (286)
T d1ob3a_          95 GGLESVTAKSFLLQLLNGIAYCHDRRVLHRDLKPQNLLINREGELKIADFGLARAFGIPVRKYTHEIVTLWYRAPDVLMG  174 (286)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECCTTHHHHHCC---------CCCTTCCHHHHTT
T ss_pred             CCcchhhhHHHHHHHHHHHHHhccCcEEecCCCCceeeEcCCCCEEecccccceecccCccccceecccchhhhHHHHhC
Confidence            889999999999999999999999999999    9999999999999999999765432   344578999999999987


Q ss_pred             CC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          166 SK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       166 ~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      .. ++.++||||+||++|+|++|++||.+.+      ..+++..+....+.++...+........+........      
T Consensus       175 ~~~~~~~~DiwslGv~l~el~~G~~pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------  242 (286)
T d1ob3a_         175 SKKYSTTIDIWSVGCIFAEMVNGTPLFPGVS------EADQLMRIFRILGTPNSKNWPNVTELPKYDPNFTVYE------  242 (286)
T ss_dssp             CCSCCTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCC------
T ss_pred             CCCCCcceeehhcCcHHHHHHHCCCCCCCCC------HHHHHHHHHHhhCCCChhhccchhhhhhccccccccc------
Confidence            65 7999999999999999999999997654      6788888888888876554432211111100000000      


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                             ......+....++.+.+||.+||++||++|||++|+|+||||+.
T Consensus       243 -------~~~~~~~~~~~s~~~~dli~~~L~~dP~~R~s~~ell~Hp~f~~  286 (286)
T d1ob3a_         243 -------PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALEHAYFKE  286 (286)
T ss_dssp             -------CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGGC
T ss_pred             -------CcchhhhcccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCc
Confidence                   00011233445788999999999999999999999999999973

>d1uwha_ d.144.1.7 (A:) B-Raf kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: B-Raf kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.5e-41  Score=297.91  Aligned_cols=222  Identities=20%  Similarity=0.204  Sum_probs=173.1

Q ss_pred             cccccccccC-ccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhh
Q 045353           23 ASKENKSLYG-DLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSR  100 (358)
Q Consensus        23 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~  100 (358)
                      ..||+|++.. ..+....+.++++++...+  +.|++++.......  ++.+|+|||||+||+|.+++.. ...+++.++
T Consensus        31 ~~vAvK~~~~~~~~~~~~~~~~~E~~~l~~--l~HpnIv~~~~~~~--~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~  106 (276)
T d1uwha_          31 GDVAVKMLNVTAPTPQQLQAFKNEVGVLRK--TRHVNILLFMGYST--APQLAIVTQWCEGSSLYHHLHIIETKFEMIKL  106 (276)
T ss_dssp             SEEEEEECCCSSCCTTHHHHHHHHHHHHTT--CCCTTBCCEEEEEC--SSSCEEEEECCCEEEHHHHHHTSCCCCCHHHH
T ss_pred             CEEEEEEEEcccCCHHHHHHHHHHHHHHHh--CCCCCEeeeeEEEe--ccEEEEEEecCCCCCHHHHHhhccCCCCHHHH
Confidence            3589999875 3456667788888888777  46888888776543  4578999999999999998864 456889999


Q ss_pred             hHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----CCCCCccCCCcchhHHHhCC---CC
Q 045353          101 DNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----QFTNDIQTRQYRCPEVLLGS---KY  168 (358)
Q Consensus       101 ~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----~~~~~~gt~~Y~aPE~l~~~---~~  168 (358)
                      ..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....     .....+||+.|||||++.+.   .|
T Consensus       107 ~~i~~qi~~gl~yLH~~~ivHrDlKp~NiLl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~  186 (276)
T d1uwha_         107 IDIARQTAQGMDYLHAKSIIHRDLKSNNIFLHEDLTVKIGDFGLATVKSRWSGSHQFEQLSGSILWMAPEVIRMQDKNPY  186 (276)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCSCCCGGGEEEETTSSEEECCCCCSCC------------CCCCGGGCCHHHHTTCSSCCC
T ss_pred             HHHHHHHHHHHHHHhcCCEeccccCHHHEEEcCCCCEEEccccceeeccccCCcccccccccCcccCCHHHHhcccCCCC
Confidence            9999999999999999999999    999999999999999999976542     23456899999999999753   48


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++|||||||++|||++|+.||.+.+      ....+..+....-..|.                              
T Consensus       187 ~~~sDiwS~Gv~l~el~tg~~Pf~~~~------~~~~~~~~~~~~~~~p~------------------------------  230 (276)
T d1uwha_         187 SFQSDVYAFGIVLYELMTGQLPYSNIN------NRDQIIFMVGRGYLSPD------------------------------  230 (276)
T ss_dssp             CHHHHHHHHHHHHHHHHHSSCTTTTCC------CHHHHHHHHHHTSCCCC------------------------------
T ss_pred             CchhhhhhhHHHHHHHHHCCCCCCCCC------hHHHHHHHHhcCCCCCc------------------------------
Confidence            999999999999999999999997544      23333333221111110                              


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                            ....+..+++.+.+||.+||+.||++|||++|+++|
T Consensus       231 ------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~~il~~  266 (276)
T d1uwha_         231 ------LSKVRSNCPKAMKRLMAECLKKKRDERPLFPQILAS  266 (276)
T ss_dssp             ------GGGSCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------chhccccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                  012334557889999999999999999999999986

>d1xwsa_ d.144.1.7 (A:) Proto-oncogene serine/threonine-protein kinase Pim-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Proto-oncogene serine/threonine-protein kinase Pim-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3e-42  Score=305.51  Aligned_cols=222  Identities=18%  Similarity=0.242  Sum_probs=178.9

Q ss_pred             ccCcccccccccCccch-----hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCC-CCccccccccc
Q 045353           20 ESSASKENKSLYGDLTK-----NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNG-VSVEERQNDSV   93 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~g-g~L~~~~~~~~   93 (358)
                      .+|..||+|.+......     ...+++.++.....+....|++++.+.+.... ....|+||||+.| +++.+++....
T Consensus        27 ~~~~~vAvK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~~~h~nIv~~~~~~~~-~~~~~lv~e~~~~~~~l~~~~~~~~  105 (273)
T d1xwsa_          27 SDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER-PDSFVLILERPEPVQDLFDFITERG  105 (273)
T ss_dssp             TTCCEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-SSEEEEEEECCSSEEEHHHHHHHHC
T ss_pred             CCCCEEEEEEEehHHccchhhhhHHHHHHHHHHHHHHhccCCCCccEEEEEEee-CCeEEEEEEeccCcchHHHHHhccC
Confidence            46788999988654322     23355778887777765567888887776543 4578999999986 67888888778


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccC-CCcEEEEecCCceecCC-CCCCCccCCCcchhHHHhCCC
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-DVQCKLVDFGNACWTHK-QFTNDIQTRQYRCPEVLLGSK  167 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-~~~vkL~DFG~a~~~~~-~~~~~~gt~~Y~aPE~l~~~~  167 (358)
                      .+++.+++.++.|++.|+.|+|+.+++||    +|||++. ++.+||+|||+|+.... ..++.+||+.|+|||++.+..
T Consensus       106 ~l~e~~~~~~~~qi~~al~~lH~~~iiHrDiKp~NIll~~~~~~vkl~DFG~a~~~~~~~~~~~~GT~~y~aPE~~~~~~  185 (273)
T d1xwsa_         106 ALQEELARSFFWQVLEAVRHCHNCGVLHRDIKDENILIDLNRGELKLIDFGSGALLKDTVYTDFDGTRVYSPPEWIRYHR  185 (273)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEETTTTEEEECCCTTCEECCSSCBCCCCSCGGGSCHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHCCCccccCcccceEEecCCCeEEECccccceecccccccccccCCCcCCHHHHcCCC
Confidence            89999999999999999999999999999    9999985 47999999999987654 346678999999999999877


Q ss_pred             C-CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 Y-STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 ~-~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                      + +.++||||+||++|+|++|+.||.+..        .    +                                     
T Consensus       186 ~~~~~~DiwSlGvilyell~g~~Pf~~~~--------~----i-------------------------------------  216 (273)
T d1xwsa_         186 YHGRSAAVWSLGILLYDMVCGDIPFEHDE--------E----I-------------------------------------  216 (273)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHSSCSCCSHH--------H----H-------------------------------------
T ss_pred             CCCcccccccceeeehhHhhCCCCCCCch--------H----H-------------------------------------
Confidence            5 677999999999999999999995311        0    0                                     


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                           ......++..+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       217 -----~~~~~~~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  261 (273)
T d1xwsa_         217 -----IRGQVFFRQRVSSECQHLIRWCLALRPSDRPTFEEIQNHPWMQDV  261 (273)
T ss_dssp             -----HHCCCCCSSCCCHHHHHHHHHHTCSSGGGSCCHHHHHTSGGGSSC
T ss_pred             -----hhcccCCCCCCCHHHHHHHHHHccCCHhHCcCHHHHhcCHhhCCC
Confidence                 011122344557889999999999999999999999999999863

>d2b1pa1 d.144.1.7 (A:46-400) c-jun N-terminal kinase (jnk3s) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-jun N-terminal kinase (jnk3s)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-41  Score=307.20  Aligned_cols=272  Identities=19%  Similarity=0.228  Sum_probs=194.1

Q ss_pred             ccccc-cccCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCC-----CCCCCCcccccCCCCCcc
Q 045353           14 TDKVV-TESSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-----SSPDNFSVDTIPNGVSVE   86 (358)
Q Consensus        14 ~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~iv~e~~~gg~L~   86 (358)
                      |-+.. ..+|..+|+|++..... +...+++.++.+...++  .|++++........     ....+|+|||||.|+.+.
T Consensus        33 V~~~~d~~t~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~l--~hpnIv~~~~~f~~~~~~~~~~~~~iv~Ey~~~~l~~  110 (355)
T d2b1pa1          33 VCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCV--NHKNIISLLNVFTPQKTLEEFQDVYLVMELMDANLCQ  110 (355)
T ss_dssp             EEEEEETTTTEEEEEEEEESTTSSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEECSCCSTTTCCEEEEEEECCSEEHHH
T ss_pred             EEEEEECCCCCEEEEEEEChhhcCHHHHHHHHHHHHHHHhc--CCCCeeEEEEEEecccccccCceeEEEEeccchHHHH
Confidence            34444 34688999999987654 45556778888777663  67788777665432     346789999999988776


Q ss_pred             cccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC--CCCCCccCCCcchh
Q 045353           87 ERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK--QFTNDIQTRQYRCP  160 (358)
Q Consensus        87 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aP  160 (358)
                      .+.   ..+++.+++.++.|++.|+.|+|+.|++||    +|||++.++.+||+|||+++....  ..+..+||+.|+||
T Consensus       111 ~~~---~~~~~~~i~~~~~qil~gl~~LH~~giiHrDlKP~Nil~~~~~~~kl~df~~~~~~~~~~~~~~~~~t~~y~aP  187 (355)
T d2b1pa1         111 VIQ---MELDHERMSYLLYQMLCGIKHLHSAGIIHRDLKPSNIVVKSDCTLKILDFGLARTAGTSFMMTPYVVTRYYRAP  187 (355)
T ss_dssp             HHT---SCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC---------------CCTTCCH
T ss_pred             hhh---cCCCHHHHHHHHHHHHHHHHHhhhcccccccCCccccccccccceeeechhhhhccccccccccccccccccCh
Confidence            553   347889999999999999999999999999    999999999999999999876543  34556899999999


Q ss_pred             HHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh-hccCCchh
Q 045353          161 EVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF-NRHGDLRH  239 (358)
Q Consensus       161 E~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~-~~~~~~~~  239 (358)
                      |++.+..|+.++||||+||++|+|++|++||.+.+      ...++..+.+.++.++...+.........+ ........
T Consensus       188 E~l~~~~~~~~~DiwSlG~~l~ell~g~~pF~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (355)
T d2b1pa1         188 EVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRD------YIDQWNKVIEQLGTPCPEFMKKLQPTVRNYVENRPKYAG  261 (355)
T ss_dssp             HHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSS------HHHHHHHHHHHHCCCCHHHHTTSCHHHHHHHHTSCCCCC
T ss_pred             hhhcCCCCCCCcccccccchHHHHhhCCCCCCCCC------HHHHHHHHHHhccCCCHHHHHHhhhhHHHHhhcCccccc
Confidence            99999999999999999999999999999998665      678888888888887777665543322211 11111100


Q ss_pred             hhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCC
Q 045353          240 IRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGP  297 (358)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~  297 (358)
                      ....... ...............++++.+||.+||++||++||||+|||+||||+...
T Consensus       262 ~~~~~~~-~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~ta~elL~Hpw~~~~~  318 (355)
T d2b1pa1         262 LTFPKLF-PDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQHPYINVWY  318 (355)
T ss_dssp             CCHHHHS-CGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHTSTTTGGGC
T ss_pred             ccccccc-ccccccccccccccCCHHHHHHHHHHCcCChhHCcCHHHHhcCcccCCCC
Confidence            0000000 00000001112234578999999999999999999999999999998743

>d1gz8a_ d.144.1.7 (A:) Cyclin-dependent PK, CDK2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.3e-41  Score=301.31  Aligned_cols=258  Identities=22%  Similarity=0.230  Sum_probs=193.6

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccc-cccccC
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQN-DSVVNN   96 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~-~~~~~~   96 (358)
                      .++|..||+|.+.... .+.....+.++.+...+  ..|++++........ ...+|+|||||.|+.+..... ....++
T Consensus        24 ~~~~~~vAvK~i~~~~~~~~~~~~~~~Ei~il~~--l~Hp~Iv~~~~~~~~-~~~~~iv~e~~~~~~~~~~~~~~~~~l~  100 (298)
T d1gz8a_          24 KLTGEVVALKKIRLDTETEGVPSTAIREISLLKE--LNHPNIVKLLDVIHT-ENKLYLVFEFLHQDLKKFMDASALTGIP  100 (298)
T ss_dssp             TTTCCEEEEEEEC-------CCHHHHHHHHHHTT--CCCTTBCCEEEEEEE-TTEEEEEEECCSEEHHHHHHHTTTTCCC
T ss_pred             CCCCCEEEEEEEehhhcChHHHHHHHHHHHHHHh--CCCCcEEEecccccc-ccceeEEEeecCCchhhhhhhhcccCCC
Confidence            3568889999986543 33446777888877776  468888888766543 567899999999876665443 345689


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC---CCCCCccCCCcchhHHHhCCC-C
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK---QFTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~---~~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      +.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....   .....+||+.|+|||++.... +
T Consensus       101 e~~~~~~~~qil~~L~yLH~~~IiHrDiKpeNIl~~~~~~~kl~DFG~a~~~~~~~~~~~~~~gt~~y~apE~~~~~~~~  180 (298)
T d1gz8a_         101 LPLIKSYLFQLLQGLAFCHSHRVLHRDLKPQNLLINTEGAIKLADFGLARAFGVPVRTYTHEVVTLWYRAPEILLGCKYY  180 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTSCEEECSTTHHHHHCCCSBCTTCCBCCCTTCCHHHHTTCSSC
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEccccCchheeecccCcceeccCCcceeccCCcccceeecccceeeehhhhccccCC
Confidence            99999999999999999999999999    999999999999999999976543   344558999999999998877 5


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|+.||.+.+      ..+++..+....+.+....+........+....      .   .+..
T Consensus       181 ~~~~DiwSlGvily~m~~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~------~---~~~~  245 (298)
T d1gz8a_         181 STAVDIWSLGCIFAEMVTRRALFPGDS------EIDQLFRIFRTLGTPDEVVWPGVTSMPDYKPSF------P---KWAR  245 (298)
T ss_dssp             CTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCTTTSTTGGGSTTCCTTS------C---CCCC
T ss_pred             CccccccccchhhhHHhhCCCCCCCCC------HHHHHHHHHHhcCCCchhhcccccccccccccc------c---cccc
Confidence            889999999999999999999997654      678888888888887655443211111100000      0   0000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ..    ........++++.+||.+||++||++|||++|+|+||||++-..
T Consensus       246 ~~----~~~~~~~~s~~~~dll~~mL~~dP~~R~t~~ell~H~ff~~~~~  291 (298)
T d1gz8a_         246 QD----FSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALAHPFFQDVTK  291 (298)
T ss_dssp             CC----HHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHTSGGGTTCCC
T ss_pred             cc----hhhhccCCCHHHHHHHHHHccCChhHCcCHHHHhCCHhhccCCC
Confidence            00    00112345688999999999999999999999999999987544

>d1tkia_ d.144.1.7 (A:) Titin, kinase domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Titin, kinase domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-41  Score=306.74  Aligned_cols=228  Identities=19%  Similarity=0.206  Sum_probs=182.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~   98 (358)
                      .+|..+|+|.+....  ..+..++++.+...+  ..|++++.+.+.... ...+|+|||||+||+|.+++.... .+++.
T Consensus        28 ~~~~~~AiK~i~~~~--~~~~~~~~Ei~il~~--l~HpnIv~~~~~~~~-~~~~~lvmE~~~gg~L~~~i~~~~~~l~e~  102 (321)
T d1tkia_          28 SSKKTYMAKFVKVKG--TDQVLVKKEISILNI--ARHRNILHLHESFES-MEELVMIFEFISGLDIFERINTSAFELNER  102 (321)
T ss_dssp             TTTEEEEEEEECCCT--HHHHHHHHHHHHHHH--SCCTTBCCEEEEEEE-TTEEEEEECCCCCCBHHHHHTSSSCCCCHH
T ss_pred             CCCcEEEEEEEcCCc--ccHHHHHHHHHHHHh--CCCCCCCeEEEEEEE-CCEEEEEEecCCCCcHHHHHHhcCCCCCHH
Confidence            467789999987653  334456677766655  467888888876543 467999999999999999998655 68999


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCC--CcEEEEecCCceecCCC--CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVD--VQCKLVDFGNACWTHKQ--FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~--~~vkL~DFG~a~~~~~~--~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      +++.++.|++.|+.|+|+.+++||    +|||++.+  ..+||+|||+|+.....  ....+||+.|+|||++.+..|+.
T Consensus       103 ~~~~i~~qi~~al~yLH~~~iiHrDlKp~NIll~~~~~~~ikl~DFG~~~~~~~~~~~~~~~~t~~y~ape~~~~~~~~~  182 (321)
T d1tkia_         103 EIVSYVHQVCEALQFLHSHNIGHFDIRPENIIYQTRRSSTIKIIEFGQARQLKPGDNFRLLFTAPEYYAPEVHQHDVVST  182 (321)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEESSSSCCCEEECCCTTCEECCTTCEEEEEESCGGGSCHHHHTTCEECH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCcccccccceeecCCCceEEEEcccchhhccccCCcccccccccccccchhccCCCCCc
Confidence            999999999999999999999999    99999854  58999999999876432  34458999999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++||||+||++|+|++|.+||.+.+      ..+.+..+....-.++..                               
T Consensus       183 ~~DiWSlGvily~ll~G~~Pf~~~~------~~~~~~~i~~~~~~~~~~-------------------------------  225 (321)
T d1tkia_         183 ATDMWSLGTLVYVLLSGINPFLAET------NQQIIENIMNAEYTFDEE-------------------------------  225 (321)
T ss_dssp             HHHHHHHHHHHHHHHHSSCTTCCSS------HHHHHHHHHHTCCCCCHH-------------------------------
T ss_pred             hhhcccHHHHHHHHHhCCCCCCCCC------HHHHHHHHHhCCCCCChh-------------------------------
Confidence            9999999999999999999997654      344444443322222211                               


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                             .+..+++++.+||.+||+.||++|||++|+|+||||+..
T Consensus       226 -------~~~~~s~~~~~li~~~L~~dp~~R~s~~eil~hp~~~~~  264 (321)
T d1tkia_         226 -------AFKEISIEAMDFVDRLLVKERKSRMTASEALQHPWLKQK  264 (321)
T ss_dssp             -------HHTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHSHHHHSC
T ss_pred             -------hccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccC
Confidence                   112346789999999999999999999999999999753

>d1u59a_ d.144.1.7 (A:) Tyrosine-protein kinase ZAP-70 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase ZAP-70
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-41  Score=299.95  Aligned_cols=224  Identities=15%  Similarity=0.158  Sum_probs=183.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      .++..||+|++.....+...+++.++++...++  .|++++.+.....  +..+|+|||||+||+|.+++.. ...+++.
T Consensus        34 ~~~~~vAvK~l~~~~~~~~~~~~~~E~~il~~l--~HpnIv~l~g~~~--~~~~~lvmE~~~~g~L~~~l~~~~~~l~~~  109 (285)
T d1u59a_          34 KKQIDVAIKVLKQGTEKADTEEMMREAQIMHQL--DNPYIVRLIGVCQ--AEALMLVMEMAGGGPLHKFLVGKREEIPVS  109 (285)
T ss_dssp             -CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHC--CCTTBCCEEEEEE--SSSEEEEEECCTTEEHHHHHTTCTTTSCHH
T ss_pred             CCcEEEEEEEEChhcCHHHHHHHHHHHHHHHhC--CCCCEeeEeeeec--cCeEEEEEEeCCCCcHHHHhhccccCCCHH
Confidence            345579999999888888888999998888774  6888888877654  3468999999999999998654 4578899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....      ....+||+.|+|||++.+..|
T Consensus       110 ~~~~i~~qi~~gL~ylH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~  189 (285)
T d1u59a_         110 NVAELLHQVSMGMKYLEEKNFVHRDLAARNVLLVNRHYAKISDFGLSKALGADDSYYTARSAGKWPLKWYAPECINFRKF  189 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEEETTEEEECCCTTCEECTTCSCEECCCCSSCCCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHHHhCCeecCcCchhheeeccCCceeeccchhhhcccccccccccccccccCccccChHHHhCCCC
Confidence            999999999999999999999999    8999999999999999999875432      234478999999999999899


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|||++ |+.||.+.+      ..+....+..  |.                                
T Consensus       190 ~~ksDVwS~Gv~l~E~lt~G~~Pf~~~~------~~~~~~~i~~--~~--------------------------------  229 (285)
T d1u59a_         190 SSRSDVWSYGVTMWEALSYGQKPYKKMK------GPEVMAFIEQ--GK--------------------------------  229 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHTTSCCTTTTCC------THHHHHHHHT--TC--------------------------------
T ss_pred             CccchhhcchHHHHHHHhCCCCCCCCCC------HHHHHHHHHc--CC--------------------------------
Confidence            999999999999999998 899997544      2233222211  11                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHH---hcCcCcC
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC---LSHPWMS  294 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~el---L~hpwf~  294 (358)
                             ....++.+++++.+||.+||+.||++|||+.++   |+|+|+.
T Consensus       230 -------~~~~p~~~~~~l~~li~~cl~~~p~~RPs~~~i~~~L~~~~~~  272 (285)
T d1u59a_         230 -------RMECPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYS  272 (285)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             -------CCCCCCcCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHH
Confidence                   112345567889999999999999999999888   6788885

>d1jpaa_ d.144.1.7 (A:) ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: ephb2 receptor tyrosine kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.4e-40  Score=298.27  Aligned_cols=221  Identities=14%  Similarity=0.192  Sum_probs=172.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      +.+..||+|.+....+...++++.++.+...++  .|++++.+..... ....+|+|||||+||+|.+++.. ...+++.
T Consensus        52 ~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~HpnIv~l~g~~~-~~~~~~iv~Ey~~~g~L~~~~~~~~~~l~~~  128 (299)
T d1jpaa_          52 KREIFVAIKTLKSGYTEKQRRDFLSEASIMGQF--DHPNVIHLEGVVT-KSTPVMIITEFMENGSLDSFLRQNDGQFTVI  128 (299)
T ss_dssp             -CCEEEEEEECCSSCCHHHHHHHHHHHHHHTTC--CCTTBCCEEEEEC-SSSSCEEEEECCTTEEHHHHHHTTTTCSCHH
T ss_pred             CEEEEEEEEEECcccCHHHHHHHHHHHHHHHhC--CCCCCccEEEEEe-eCCEEEEEEEecCCCcceeeeccccCCCCHH
Confidence            344568999999999999999999998888874  6889998887754 34678999999999999997775 4468899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC--------CCCCccCCCcchhHHHhCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ--------FTNDIQTRQYRCPEVLLGS  166 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~--------~~~~~gt~~Y~aPE~l~~~  166 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....        .....||+.|+|||++.+.
T Consensus       129 ~~~~i~~qia~gl~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~  208 (299)
T d1jpaa_         129 QLVGMLRGIAAGMKYLADMNYVHRDLAARNILVNSNLVCKVSDFGLSRFLEDDTSDPTYTSALGGKIPIRWTAPEAIQYR  208 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCC-----------------------CGGGSCHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHhhCCCccCccccceEEECCCCcEEECCcccceEccCCCCcceeeecccccCCccccCHHHHhcC
Confidence            999999999999999999999999    9999999999999999999765422        1223578999999999999


Q ss_pred             CCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccC
Q 045353          167 KYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRF  245 (358)
Q Consensus       167 ~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~  245 (358)
                      .|+.++|||||||++|||++ |.+||.+.+      ..+.+..+....                                
T Consensus       209 ~~~~~sDvwS~Gvvl~el~t~g~~Pf~~~~------~~~~~~~i~~~~--------------------------------  250 (299)
T d1jpaa_         209 KFTSASDVWSYGIVMWEVMSYGERPYWDMT------NQDVINAIEQDY--------------------------------  250 (299)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTTC--------------------------------
T ss_pred             CCCcccccccchHHHHHHHhCCCCCCCCCC------HHHHHHHHHcCC--------------------------------
Confidence            99999999999999999998 899997544      333333322110                                


Q ss_pred             CcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          246 WPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                               ....+..++..+.+||.+||+.||++|||+.|++++
T Consensus       251 ---------~~~~~~~~~~~l~~li~~cl~~~P~~RPs~~ei~~~  286 (299)
T d1jpaa_         251 ---------RLPPPMDCPSALHQLMLDCWQKDRNHRPKFGQIVNT  286 (299)
T ss_dssp             ---------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHH
T ss_pred             ---------CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                     112234457789999999999999999999998764

>d1ywna1 d.144.1.7 (A:818-1166) Vascular endothelial growth factor receptor 2 (kdr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Vascular endothelial growth factor receptor 2 (kdr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-40  Score=298.41  Aligned_cols=223  Identities=14%  Similarity=0.126  Sum_probs=168.7

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      ++..||+|.+.........+.+.++.+...+.. ++++++.........+..+|+|||||+||+|.+++...        
T Consensus        42 ~~~~vAvK~l~~~~~~~~~~~~~~e~~~l~~~~-~h~~iv~~~~~~~~~~~~~~iv~E~~~~g~L~~~l~~~~~~~~~~~  120 (299)
T d1ywna1          42 TCRTVAVKMLKEGATHSEHRALMSELKILIHIG-HHLNVVNLLGACTKPGGPLMVIVEFCKFGNLSTYLRSKRNEFVPYK  120 (299)
T ss_dssp             CEEEEEEEEC----CHHHHHHHHHHHHHHHHHC-CCTTBCCEEEEECSTTSCCEEEEECCTTCBHHHHHHHTGGGBCC--
T ss_pred             CCeEEEEEEEccccCcHHHHHHHHHHHHHHhhc-CCCeEEEeeeeeccCCCeEEEEEEecCCCcHHHHHHhccccccccc
Confidence            345789999998888888888877777776653 66677777776666667899999999999999988632        


Q ss_pred             --------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCC
Q 045353           93 --------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTR  155 (358)
Q Consensus        93 --------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~  155 (358)
                              ..+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....     ....+||+
T Consensus       121 ~~~~~~~~~~l~~~~~~~~~~qi~~gl~ylH~~~ivHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~gt~  200 (299)
T d1ywna1         121 VAPEDLYKDFLTLEHLICYSFQVAKGMEFLASRKCIHRDLAARNILLSEKNVVKICDFGLARDIYKDPDYVRKGDARLPL  200 (299)
T ss_dssp             ---------CBCHHHHHHHHHHHHHHHHHHHHTTCCCSCCCGGGEEECGGGCEEECC------CCSCTTSCCTTSCCCGG
T ss_pred             cchhhhhcccCCHHHHHHHHHHHHHHHHHHHhCCCcCCcCCccceeECCCCcEEEccCcchhhccccccccccCceeeCc
Confidence                    246788999999999999999999999999    9999999999999999999764322     23457999


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhcC-CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhcc
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELATG-DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRH  234 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~  234 (358)
                      .|+|||++.+..|+.++|||||||++|+|++| .+||.+...     .......+..  +.                   
T Consensus       201 ~y~APE~l~~~~~~~~sDiwS~Gvil~ellt~~~~p~~~~~~-----~~~~~~~~~~--~~-------------------  254 (299)
T d1ywna1         201 KWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKI-----DEEFCRRLKE--GT-------------------  254 (299)
T ss_dssp             GGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCC-----SHHHHHHHHH--TC-------------------
T ss_pred             cccchhHhhcCCCCcccceeehHHHHHHHHhCCCCCCCCCCH-----HHHHHHHHhc--CC-------------------
Confidence            99999999999999999999999999999986 467764431     1111111111  10                   


Q ss_pred             CCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          235 GDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                          ....+...++++.+||.+||+.||++|||++|+++|
T Consensus       255 --------------------~~~~~~~~~~~l~~li~~cl~~dP~~Rpt~~eil~~  290 (299)
T d1ywna1         255 --------------------RMRAPDYTTPEMYQTMLDCWHGEPSQRPTFSELVEH  290 (299)
T ss_dssp             --------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             --------------------CCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                112344557889999999999999999999999987

>d1xbba_ d.144.1.7 (A:) Tyrosine-protein kinase SYK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase SYK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.4e-41  Score=297.19  Aligned_cols=223  Identities=17%  Similarity=0.181  Sum_probs=176.0

Q ss_pred             cCcccccccccCccc-hhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           21 SSASKENKSLYGDLT-KNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+..||+|++..... ...++++.++++...++  .|++++.+.....  +...|+|||||+||+|.+++.....+++.+
T Consensus        33 ~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l--~HpnIv~~~g~~~--~~~~~lvmE~~~~g~L~~~l~~~~~l~~~~  108 (277)
T d1xbba_          33 VVKTVAVKILKNEANDPALKDELLAEANVMQQL--DNPYIVRMIGICE--AESWMLVMEMAELGPLNKYLQQNRHVKDKN  108 (277)
T ss_dssp             SEEEEEEEEEC-----CHHHHHHHHHHHHHHTC--CCTTBCCEEEEEE--SSSEEEEEECCTTEEHHHHHHHCTTCCHHH
T ss_pred             cCeEEEEEEEChhhCCHHHHHHHHHHHHHHHhC--CCCCCceEEEEec--cCCEEEEEEcCCCCcHHHHHhhccCCCHHH
Confidence            445789999876543 44567788888887764  6888888877653  345789999999999999998888899999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCC
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      +..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....      .....||+.|+|||++.+..|+
T Consensus       109 ~~~i~~qi~~gl~ylH~~~iiHrDlKp~Nill~~~~~~kl~DFGla~~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~  188 (277)
T d1xbba_         109 IIELVHQVSMGMKYLEESNFVHRDLAARNVLLVTQHYAKISDFGLSKALRADENYYKAQTHGKWPVKWYAPECINYYKFS  188 (277)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCSGGGEEEEETTEEEECCCTTCEECCTTCSEEEC----CCCGGGCCHHHHHHCEEE
T ss_pred             HHHHHHHHHHHHhhHHhCCcccCCCcchhhcccccCcccccchhhhhhccccccccccccccCCCceecCchhhcCCCCC
Confidence            99999999999999999999999    9999999999999999999865432      2334789999999999999999


Q ss_pred             cchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          170 TSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      .++|||||||++|||++ |++||.+.+      ..+....+..  |.                                 
T Consensus       189 ~~sDiwS~Gv~l~ellt~g~~Pf~~~~------~~~~~~~i~~--~~---------------------------------  227 (277)
T d1xbba_         189 SKSDVWSFGVLMWEAFSYGQKPYRGMK------GSEVTAMLEK--GE---------------------------------  227 (277)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHT--TC---------------------------------
T ss_pred             chhhhccchhhhhHHhhCCCCCCCCCC------HHHHHHHHHc--CC---------------------------------
Confidence            99999999999999997 899997543      2222222211  11                                 


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHH---hcCcCcC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQC---LSHPWMS  294 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~el---L~hpwf~  294 (358)
                            ....+..+++++.+||.+||+.||++|||++++   |+|+|+.
T Consensus       228 ------~~~~p~~~~~~~~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~  270 (277)
T d1xbba_         228 ------RMGCPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYD  270 (277)
T ss_dssp             ------CCCCCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHH
T ss_pred             ------CCCCCcccCHHHHHHHHHHcCCCHhHCcCHHHHHHHhhCHHhh
Confidence                  112345567889999999999999999999998   5676653

>d1q5ka_ d.144.1.7 (A:) Glycogen synthase kinase-3 beta (Gsk3b) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Glycogen synthase kinase-3 beta (Gsk3b)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.9e-40  Score=300.14  Aligned_cols=251  Identities=20%  Similarity=0.213  Sum_probs=187.3

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCC-----CCCCCCCCcccccCCCCCccccc---cc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADS-----KPSSPDNFSVDTIPNGVSVEERQ---ND   91 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~iv~e~~~gg~L~~~~---~~   91 (358)
                      .+|..||+|.+..+     +....++.+...+  +.|++++......     ......+|+|||||+||.+..+.   ..
T Consensus        43 ~~~~~vAiK~i~~~-----~~~~~~Ei~il~~--l~h~niv~~~~~~~~~~~~~~~~~~~lv~Ey~~~~~~~~l~~~~~~  115 (350)
T d1q5ka_          43 DSGELVAIKKVLQD-----KRFKNRELQIMRK--LDHCNIVRLRYFFYSSGEKKDEVYLNLVLDYVPETVYRVARHYSRA  115 (350)
T ss_dssp             TTCCEEEEEEEECC-----SSSCCHHHHHHHH--CCCTTBCCEEEEEEEC--CCSCCEEEEEEECCSEEHHHHHHHHHHT
T ss_pred             CCCCEEEEEEECcc-----chHHHHHHHHHHh--cCCCCCCcEEEEEEecCccCCceEEEEEEeccCCccHHHHHhhhhc
Confidence            46788999988653     2233456665555  3677777765443     22334578999999988654433   35


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecC--CCCCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTH--KQFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~--~~~~~~~gt~~Y~aPE~l~  164 (358)
                      ...+++.+++.++.|++.|+.|+|+.||+||    +|||++.++ .+||+|||+|....  ....+.+||+.|+|||++.
T Consensus       116 ~~~l~~~~~~~i~~qil~aL~yLH~~~IiHrDiKp~NILl~~~~~~~kl~DFG~a~~~~~~~~~~~~~gt~~y~aPE~~~  195 (350)
T d1q5ka_         116 KQTLPVIYVKLYMYQLFRSLAYIHSFGICHRDIKPQNLLLDPDTAVLKLCDFGSAKQLVRGEPNVSYICSRYYRAPELIF  195 (350)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECTTTCCEEECCCTTCEECCTTSCCCSCCSCTTSCCHHHHT
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHhcCCcccCCCcceEEEecCCCceeEecccchhhccCCcccccccccccccChHHhh
Confidence            6678999999999999999999999999999    999999775 89999999997754  3355668999999999998


Q ss_pred             CC-CCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          165 GS-KYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       165 ~~-~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +. .|+.++||||+||++|+|++|.+||.+.+      ..+++..+.+.+|.++...+..........       .....
T Consensus       196 ~~~~~~~~~DIwSlG~il~el~~g~~pf~~~~------~~~~l~~i~~~~g~~~~~~~~~~~~~~~~~-------~~~~~  262 (350)
T d1q5ka_         196 GATDYTSSIDVWSAGCVLAELLLGQPIFPGDS------GVDQLVEIIKVLGTPTREQIREMNPNYTEF-------KFPQI  262 (350)
T ss_dssp             TCSSCCTHHHHHHHHHHHHHHHHTSCSSCCSS------HHHHHHHHHHHHCCCCHHHHHHHCC---CC-------CCCCC
T ss_pred             cccCCCcceeecccceEEEehhhCCCCCCCCC------HHHHHHHHHHHhCCChHHhhhhhccchhhc-------ccccc
Confidence            75 58999999999999999999999997655      678899999999998876553221110000       00000


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ...+.      ........++++.+||.+||++||++||||.|+|+||||++.
T Consensus       263 ~~~~~------~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~Hp~f~~~  309 (350)
T d1q5ka_         263 KAHPW------TKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACAHSFFDEL  309 (350)
T ss_dssp             CCCCG------GGTSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGGGG
T ss_pred             ccCch------hhhcccCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccc
Confidence            00000      001223457789999999999999999999999999999864

>d1qpca_ d.144.1.7 (A:) Lymphocyte kinase (lck) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Lymphocyte kinase (lck)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.8e-40  Score=293.77  Aligned_cols=229  Identities=14%  Similarity=0.118  Sum_probs=179.0

Q ss_pred             ccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc
Q 045353           14 TDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      |-+.....+..||+|.+....  ..++.+.++.+...++  .|++++.+.....  +..+|+|||||++|+|.+++....
T Consensus        29 Vy~~~~~~~~~vAvK~~~~~~--~~~~~~~~E~~~l~~l--~HpnIv~~~g~~~--~~~~~iv~Ey~~~g~L~~~~~~~~  102 (272)
T d1qpca_          29 VWMGYYNGHTKVAVKSLKQGS--MSPDAFLAEANLMKQL--QHQRLVRLYAVVT--QEPIYIITEYMENGSLVDFLKTPS  102 (272)
T ss_dssp             EEEEEETTTEEEEEEEECTTS--SCHHHHHHHHHHHHHC--CCTTBCCEEEEEC--SSSCEEEEECCTTCBHHHHTTSHH
T ss_pred             EEEEEECCCCEEEEEEEccCc--CCHHHHHHHHHHHHhC--CCCCEeEEEeeec--cCCeEEEEEeCCCCcHHHHHhhcC
Confidence            334445567789999997643  3446688888877764  6888888886543  456899999999999999776433


Q ss_pred             --ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHH
Q 045353           94 --VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        94 --~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l  163 (358)
                        .+++.++..++.|++.|+.|+|+.+++||    +||||++++.+||+|||+|+.....    .....||+.|+|||++
T Consensus       103 ~~~l~~~~~~~i~~qi~~gl~~lH~~~ivHrDiKp~NIll~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~APE~~  182 (272)
T d1qpca_         103 GIKLTINKLLDMAAQIAEGMAFIEERNYIHRDLRAANILVSDTLSCKIADFGLARLIEDNEYTAREGAKFPIKWTAPEAI  182 (272)
T ss_dssp             HHTCCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECTTSCEEECCCTTCEECSSSCEECCTTCCCCTTTSCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhCCcccCccchhheeeecccceeeccccceEEccCCccccccccCCcccccChHHH
Confidence              47889999999999999999999999999    9999999999999999999876432    3445789999999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhcCCc-ccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGSKYSTSADLWSFACICFELATGDV-LFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~g~~-pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+..|+.++|||||||++|||+||.. ||...+      ..+.+..+...  .                           
T Consensus       183 ~~~~~~~~sDvwS~Gvvl~ellt~~~~~~~~~~------~~~~~~~i~~~--~---------------------------  227 (272)
T d1qpca_         183 NYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMT------NPEVIQNLERG--Y---------------------------  227 (272)
T ss_dssp             HHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCC------HHHHHHHHHTT--C---------------------------
T ss_pred             hCCCCCchhhhhhhHHHHHHHHhCCCCCCCCCC------HHHHHHHHHhc--C---------------------------
Confidence            98889999999999999999999654 443322      22222222110  0                           


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc--CcCcCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSA  295 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~--hpwf~~  295 (358)
                                  ....+..+++++.+||.+||+.||++|||++|+++  |+||++
T Consensus       228 ------------~~~~p~~~~~~l~~li~~cl~~~P~~Rpt~~ei~~~L~~~fts  270 (272)
T d1qpca_         228 ------------RMVRPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTA  270 (272)
T ss_dssp             ------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred             ------------CCCCcccChHHHHHHHHHHcCCCHhHCcCHHHHHHHhhhhhhc
Confidence                        11223455778999999999999999999999998  889864

>d2gfsa1 d.144.1.7 (A:5-352) MAP kinase p38 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase p38
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5e-39  Score=294.80  Aligned_cols=260  Identities=22%  Similarity=0.237  Sum_probs=196.1

Q ss_pred             cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCC----CCCCCCCcccccCCCCCccccccccc
Q 045353           19 TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSK----PSSPDNFSVDTIPNGVSVEERQNDSV   93 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~iv~e~~~gg~L~~~~~~~~   93 (358)
                      ..+|..||+|.+.... +....+++.++.+...++  .|++++.......    ..+...+++|+|+.||+|.+++... 
T Consensus        40 ~~~~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l--~h~~iv~~~~~~~~~~~~~~~~~~~i~~~~~gg~L~~~~~~~-  116 (348)
T d2gfsa1          40 TKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHM--KHENVIGLLDVFTPARSLEEFNDVYLVTHLMGADLNNIVKCQ-  116 (348)
T ss_dssp             TTTTEEEEEEECSCTTSSHHHHHHHHHHHHHHHHC--CCTTBCCCSEEECSCSSTTTCCCCEEEEECCSEEHHHHHTTC-
T ss_pred             CCCCCEEEEEEECchhcChHHHHHHHHHHHHHHhc--CCCCeeeEEEEEeeccccccCceEEEEEeecCCchhhhcccc-
Confidence            3578899999988654 334556777887777664  5677776655432    2345567788999999999988653 


Q ss_pred             ccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCC-C
Q 045353           94 VNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSK-Y  168 (358)
Q Consensus        94 ~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~-~  168 (358)
                      .+++..++.++.|++.|+.|+|+.|++||    +|||++.++.+||+|||+|........+.+||+.|+|||++.+.. +
T Consensus       117 ~l~e~~~~~i~~qil~aL~~LH~~giiHrDiKp~NILi~~~~~~kl~dfg~a~~~~~~~~~~~g~~~y~apE~~~~~~~~  196 (348)
T d2gfsa1         117 KLTDDHVQFLIYQILRGLKYIHSADIIHRDLKPSNLAVNEDCELKILDFGLARHTDDEMTGYVATRWYRAPEIMLNWMHY  196 (348)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTCCEEECCC----CCTGGGSSSCHHHHTSCHHHHTTCSCC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccccccccchhcccCcccccccccccccCchhhcCCccC
Confidence            58899999999999999999999999999    999999999999999999988887788889999999999988865 6


Q ss_pred             CcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcc
Q 045353          169 STSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      +.++||||+||++|+|++|++||.+.+      .......+.+..+.++............... ......      .+.
T Consensus       197 ~~~~DiwSlGv~l~~ll~g~~pF~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~~~  263 (348)
T d2gfsa1         197 NQTVDIWSVGCIMAELLTGRTLFPGTD------HIDQLKLILRLVGTPGAELLKKISSESARNY-IQSLTQ------MPK  263 (348)
T ss_dssp             CTTHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCCCCHHHHTTCCCHHHHHH-HTTSCC------CCC
T ss_pred             CcccchhhhhHHHHHHHhCCCCCCCCC------HHHHHHHHHHhcCCCChHHhhhccchhhhhh-hhhccc------CCC
Confidence            899999999999999999999998765      6778888888888877765543222111000 000000      000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ...    .......++.+++||.+||++||++||||+|+|+||||+....
T Consensus       264 ~~~----~~~~~~~s~~~~dli~~mL~~dP~~R~ta~elL~Hp~f~~~~~  309 (348)
T d2gfsa1         264 MNF----ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALAHAYFAQYHD  309 (348)
T ss_dssp             CCH----HHHSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTTCC
T ss_pred             cch----hhhcCCCCHHHHHHHHHHCcCChhhCcCHHHHhcCHhhCCCCC
Confidence            000    0112345778999999999999999999999999999997543

>d3bqca1 d.144.1.7 (A:3-330) Protein kinase CK2, alpha subunit {Rattus norvegicus [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Protein kinase CK2, alpha subunit
species: Rattus norvegicus [TaxId: 10116]

Probab=100.00  E-value=8.5e-40  Score=297.50  Aligned_cols=257  Identities=18%  Similarity=0.185  Sum_probs=187.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCC-CCCCCCcccccCCCCCcccccccccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQNDSVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~   98 (358)
                      .+|..||+|++..    ...++++++.....++ .+|++++...+.... ....+|+|||||.+|+|..+..   .+++.
T Consensus        58 ~~~~~vAiK~i~~----~~~~~~~~Ei~il~~l-~~hpnIv~~~~~~~~~~~~~~~~v~e~~~~~~L~~~~~---~l~e~  129 (328)
T d3bqca1          58 TNNEKVVVKILKP----VKKKKIKREIKILENL-RGGPNIITLADIVKDPVSRTPALVFEHVNNTDFKQLYQ---TLTDY  129 (328)
T ss_dssp             TTTEEEEEEEECS----SCHHHHHHHHHHHHHH-TTSTTBCCEEEEEECTTTCSEEEEEECCCSCBGGGTTT---SCCHH
T ss_pred             CCCCEEEEEEECH----HHHHHHHHHHHHHHhc-cCCCCCcEEEEEEEecCCCceeEEEeecCCCcHHHHhc---CCCHH
Confidence            5678899999764    3456777787766664 357788887766433 3467899999999999988754   48899


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCC-cEEEEecCCceecCC--CCCCCccCCCcchhHHHhCCC-CCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDV-QCKLVDFGNACWTHK--QFTNDIQTRQYRCPEVLLGSK-YST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~-~vkL~DFG~a~~~~~--~~~~~~gt~~Y~aPE~l~~~~-~~~  170 (358)
                      ++..++.|++.|+.|+|+.|++||    +|||++.++ .+||+|||+|.....  .....+||+.|+|||++.+.. |+.
T Consensus       130 ~i~~i~~qil~aL~~LH~~gIvHrDiKp~NILi~~~~~~vkl~DFG~a~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~  209 (328)
T d3bqca1         130 DIRFYMYEILKALDYCHSMGIMHRDVKPHNVMIDHEHRKLRLIDWGLAEFYHPGQEYNVRVASRYFKGPELLVDYQMYDY  209 (328)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTTTEEEECCGGGCEECCTTCCCCSCCSCGGGCCHHHHTTCCCCCT
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccceEEcCCCCeeeecccccceeccCCCcccccccCccccCcccccCCCCCCc
Confidence            999999999999999999999999    999998765 689999999987643  355668999999999999865 899


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcC--CCCChhhhhccCCchhhhhccCCcc
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALG--GRYSRDFFNRHGDLRHIRRLRFWPM  248 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  248 (358)
                      ++||||+||++|+|++|..||....     ...++...+...+|.+....+..  .......+.......     .....
T Consensus       210 ~~DiwslG~~l~e~~~g~~pf~~~~-----~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~  279 (328)
T d3bqca1         210 SLDMWSLGCMLASMIFRKEPFFHGH-----DNYDQLVRIAKVLGTEDLYDYIDKYNIELDPRFNDILGRH-----SRKRW  279 (328)
T ss_dssp             HHHHHHHHHHHHHHHHTCSSSSCCS-----SHHHHHHHHHHHHCHHHHHHHHHHTTCCCCGGGGGTCCCC-----CCCCG
T ss_pred             ccchhhhhhhhHHhccCCCCCCCCc-----hhHHHHHHHHHHHCCchhhhhhhhcccccCcccchhcccc-----cccch
Confidence            9999999999999999999997543     25667777888877543322110  000000000000000     00000


Q ss_pred             hhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCC
Q 045353          249 NKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAG  296 (358)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~  296 (358)
                      ..  ..........++++.+||.+||++||++|||++|+|+||||++-
T Consensus       280 ~~--~~~~~~~~~~s~~~~dli~~mL~~dP~~R~ta~e~L~Hp~F~~v  325 (328)
T d3bqca1         280 ER--FVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAMEHPYFYTV  325 (328)
T ss_dssp             GG--GCCTTTGGGCCHHHHHHHHHHSCSSGGGSCCHHHHHTSGGGTTS
T ss_pred             hh--cccccccccCCHHHHHHHHHHccCChhHCcCHHHHhcCcccCCC
Confidence            00  00111223457889999999999999999999999999999863

>d1rjba_ d.144.1.7 (A:) Fl cytokine receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fl cytokine receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-40  Score=299.94  Aligned_cols=219  Identities=16%  Similarity=0.133  Sum_probs=172.0

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----------   92 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----------   92 (358)
                      .||+|.+........+..+.++.+...++ ..|++++.+...... ...+|+|||||+||+|.+++...           
T Consensus        69 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l-~~HpnIv~l~~~~~~-~~~~~lv~Ey~~~g~L~~~l~~~~~~~~~~~~~~  146 (325)
T d1rjba_          69 QVAVKMLKEKADSSEREALMSELKMMTQL-GSHENIVNLLGACTL-SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEY  146 (325)
T ss_dssp             EEEEEEECC------CHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTTTTCC-------
T ss_pred             EEEEEEeccccCHHHHHHHHHHHHHHHHh-cCCCcEeEEEEEEee-CCeEEEEEEcCCCCcHHHHHHhccCCCcchhhhh
Confidence            57999998888888888888888777765 368888888776554 45789999999999999988643           


Q ss_pred             ------------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCC
Q 045353           93 ------------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTND  151 (358)
Q Consensus        93 ------------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~  151 (358)
                                  ..+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....     ....
T Consensus       147 ~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~yLH~~~IiHRDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~  226 (325)
T d1rjba_         147 ENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFKSCVHRDLAARNVLVTHGKVVKICDFGLARDIMSDSNYVVRGNA  226 (325)
T ss_dssp             --------------CCHHHHHHHHHHHHHHHHHHHHTTEEETTCSGGGEEEETTTEEEECCCGGGSCGGGCTTSEEETTE
T ss_pred             ccccccccccccCCCCHHHHHHHHHHHHHHHHHHHhCCeeeccCchhccccccCCeEEEeeccccccccCCCceeeeccc
Confidence                        246788899999999999999999999999    9999999999999999999765432     2345


Q ss_pred             ccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh
Q 045353          152 IQTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF  230 (358)
Q Consensus       152 ~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~  230 (358)
                      +||+.|||||++.+..|+.++|||||||++|||++ |.+||.+.+.      ...+..+... +.               
T Consensus       227 ~gt~~y~aPE~l~~~~~~~~~DiwS~Gvil~emlt~g~~Pf~~~~~------~~~~~~~~~~-~~---------------  284 (325)
T d1rjba_         227 RLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIFSLGVNPYPGIPV------DANFYKLIQN-GF---------------  284 (325)
T ss_dssp             EECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCC------SHHHHHHHHT-TC---------------
T ss_pred             cCCCccCChHHHcCCCCCcceeccchhHHHHHHHhCCCCCCCCCCH------HHHHHHHHhc-CC---------------
Confidence            78999999999999999999999999999999997 8999976542      1222222110 00               


Q ss_pred             hhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          231 FNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                              ....+..+++++.+||.+||+.||++|||++||++|
T Consensus       285 ------------------------~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~  320 (325)
T d1rjba_         285 ------------------------KMDQPFYATEEIYIIMQSCWAFDSRKRPSFPNLTSF  320 (325)
T ss_dssp             ------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------------------CCCCCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                                    112344567889999999999999999999999976

>d1pmea_ d.144.1.7 (A:) MAP kinase Erk2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: MAP kinase Erk2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-39  Score=294.66  Aligned_cols=258  Identities=19%  Similarity=0.191  Sum_probs=192.9

Q ss_pred             cccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCC---CCCCCcccccCCCCCccccccccccc
Q 045353           19 TESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDSVVN   95 (358)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~~~~   95 (358)
                      ..+|..||+|.+...-.....+++.++.....++  .|++++.+.......   ....+++|+|+.||+|.+++... .+
T Consensus        30 ~~~~~~vAvK~i~~~~~~~~~~~~~~Ei~il~~l--~hp~iv~~~~~~~~~~~~~~~~~~l~~~~~~g~L~~~l~~~-~l  106 (345)
T d1pmea_          30 NVNKVRVAIKKISPFEHQTYCQRTLREIKILLRF--RHENIIGINDIIRAPTIEQMKDVYLVTHLMGADLYKLLKTQ-HL  106 (345)
T ss_dssp             TTTCSEEEEEEECCTTCHHHHHHHHHHHHHHHHC--CCTTBCCCCEEECCSSTTTCCCEEEEEECCCEEHHHHHHHC-CC
T ss_pred             CCCCcEEEEEEEehhcChHHHHHHHHHHHHHHHc--CCCCCCcEEEEEeeccccccceEEEEEeecCCchhhhhhcC-CC
Confidence            3578889999998765666677788888887774  567777666554332   23445667778899999998654 58


Q ss_pred             ChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------CCCCCccCCCcchhHHHhC
Q 045353           96 NESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEVLLG  165 (358)
Q Consensus        96 ~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~l~~  165 (358)
                      ++..++.++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|.....      .....+||+.|+|||++..
T Consensus       107 ~~~~i~~i~~qil~al~yLH~~~iiHRDIKp~NILl~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~~gt~~y~aPE~l~~  186 (345)
T d1pmea_         107 SNDHICYFLYQILRGLKYIHSANVLHRDLKPSNLLLNTTCDLKICDFGLARVADPDHDHTGFLTEYVATRWYRAPEIMLN  186 (345)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTEECCCCCGGGEEECTTCCEEECCCTTCEECCGGGCBCCTTCCCCSCGGGCCGGGTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCcCCCCCcceEEECCCCCEEEcccCceeeccCCCccceeeccccccceechHHHhhc
Confidence            899999999999999999999999999    999999999999999999976532      2355689999999999865


Q ss_pred             -CCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhh--hhccCCchhhhh
Q 045353          166 -SKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDF--FNRHGDLRHIRR  242 (358)
Q Consensus       166 -~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~--~~~~~~~~~~~~  242 (358)
                       ..|+.++||||+||++|+|++|++||.+.+      ..++...+...++.+..............  .......     
T Consensus       187 ~~~~~~~~DiwSlG~il~eml~g~~pf~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  255 (345)
T d1pmea_         187 SKGYTKSIDIWSVGCILAEMLSNRPIFPGKH------YLDQLNHILGILGSPSQEDLNCIINLKARNYLLSLPHK-----  255 (345)
T ss_dssp             BCSCSTHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHHHCSCCHHHHHTCCCHHHHHHHHTSCCC-----
T ss_pred             CCCCCchhhhhccCceehHHhhCCCCCCCCC------HHHHHHHHhhhccCCChhhhhhhhhhhhhcccccCCcc-----
Confidence             458999999999999999999999997655      56777778777777665543222111100  0000000     


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                       ...+.       ....+..++.+++||.+||++||.+||||+|+|+||||+....
T Consensus       256 -~~~~~-------~~~~~~~s~~~~~li~~~L~~dP~~R~ta~e~L~hpf~~~~~~  303 (345)
T d1pmea_         256 -NKVPW-------NRLFPNADSKALDLLDKMLTFNPHKRIEVEQALAHPYLEQYYD  303 (345)
T ss_dssp             -CCCCH-------HHHCTTSCHHHHHHHHHHSCSSTTTSCCHHHHHTSGGGTTTCC
T ss_pred             -CCCCH-------HHhCCCCCHHHHHHHHHHccCChhHCcCHHHHhcCHhhccCCC
Confidence             00000       0112344678999999999999999999999999999996543

>d1sm2a_ d.144.1.7 (A:) Tyrosine-protein kinase Itk/Tsk {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tyrosine-protein kinase Itk/Tsk
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=286.84  Aligned_cols=226  Identities=13%  Similarity=0.125  Sum_probs=169.2

Q ss_pred             cccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc
Q 045353           13 KTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS   92 (358)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~   92 (358)
                      .+-+....++..||+|.+....  ..++.+.++.+...+  ..|++++.+...... ....|+|||||++|+|.+++...
T Consensus        20 ~Vy~~~~~~~~~vAvK~i~~~~--~~~~~~~~E~~~l~~--l~HpnIv~~~g~~~~-~~~~~lv~E~~~~g~L~~~l~~~   94 (263)
T d1sm2a_          20 LVHLGYWLNKDKVAIKTIREGA--MSEEDFIEEAEVMMK--LSHPKLVQLYGVCLE-QAPICLVFEFMEHGCLSDYLRTQ   94 (263)
T ss_dssp             CEEEEEETTTEEEEEEECCSSS--SCHHHHHHHHHHHHH--CCCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHTT
T ss_pred             EEEEEEECCCCEEEEEEECCCc--CcHHHHHHHHHHHHh--cCCCCcccccceecc-CCceEEEEEecCCCcHHHHhhcc
Confidence            3445556677789999987643  334567788777776  468889988877654 45789999999999999987644


Q ss_pred             -cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHH
Q 045353           93 -VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        93 -~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l  163 (358)
                       ..+.+..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....||+.|+|||++
T Consensus        95 ~~~~~~~~~~~i~~qia~gl~~lH~~~iiHrDlKp~Nill~~~~~~Kl~DFGla~~~~~~~~~~~~~~~gt~~y~aPE~l  174 (263)
T d1sm2a_          95 RGLFAAETLLGMCLDVCEGMAYLEEACVIHRDLAARNCLVGENQVIKVSDFGMTRFVLDDQYTSSTGTKFPVKWASPEVF  174 (263)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTTCCCTTCSGGGEEECGGGCEEECSCC------------------CTTSCCHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHhhhccceeecccchhheeecCCCCeEecccchheeccCCCceeecceecCcccCChHHh
Confidence             557788889999999999999999999999    9999999999999999999765432    2335789999999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhcC-CcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGSKYSTSADLWSFACICFELATG-DVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~g-~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+..|+.++|||||||++|||+++ .+||...+      ....+..+....                             
T Consensus       175 ~~~~~~~k~DVwS~Gvil~el~t~~~~~~~~~~------~~~~~~~i~~~~-----------------------------  219 (263)
T d1sm2a_         175 SFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS------NSEVVEDISTGF-----------------------------  219 (263)
T ss_dssp             TTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSCC------HHHHHHHHHHTC-----------------------------
T ss_pred             cCCCCCchhhhcchHHHHHHHHHCCCCCCCCCC------HHHHHHHHHhcC-----------------------------
Confidence            999999999999999999999995 55564332      233333332210                             


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                  ....+..+++++.+||.+||+.||++|||++|+++|
T Consensus       220 ------------~~~~p~~~~~~l~~li~~cl~~~p~~Rps~~~il~~  255 (263)
T d1sm2a_         220 ------------RLYKPRLASTHVYQIMNHCWKERPEDRPAFSRLLRQ  255 (263)
T ss_dssp             ------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ------------CCCCccccCHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                        012234456789999999999999999999999876

>d1fmka3 d.144.1.7 (A:249-533) c-src tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-src tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.2e-39  Score=286.94  Aligned_cols=233  Identities=16%  Similarity=0.157  Sum_probs=178.6

Q ss_pred             cccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-
Q 045353           13 KTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-   91 (358)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-   91 (358)
                      .|-+....++..||+|.+....  ..++.+.+++....+  +.|++|+.+....  .+...|+|||||++|+|.+++.. 
T Consensus        32 ~Vy~~~~~~~~~vAiK~l~~~~--~~~~~~~~E~~~l~~--l~h~nIv~~~g~~--~~~~~~lv~Ey~~~g~l~~~~~~~  105 (285)
T d1fmka3          32 EVWMGTWNGTTRVAIKTLKPGT--MSPEAFLQEAQVMKK--LRHEKLVQLYAVV--SEEPIYIVTEYMSKGSLLDFLKGE  105 (285)
T ss_dssp             EEEEEEETTTEEEEEEECCTTS--SCHHHHHHHHHHHHH--CCCTTBCCEEEEE--CSSSCEEEECCCTTCBHHHHHSHH
T ss_pred             EEEEEEECCCCEEEEEEECccc--CCHHHHHHHHHHHHh--cccCCEeEEEEEE--ecCCeEEEEEecCCCchhhhhhhc
Confidence            3445556667789999997543  345678888777766  4678888887754  34678999999999999988764 


Q ss_pred             -ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHH
Q 045353           92 -SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEV  162 (358)
Q Consensus        92 -~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~  162 (358)
                       ...+++.++..++.+++.|+.|+|..+++||    +|||++.++.+||+|||+|+.....    .....||+.|+|||+
T Consensus       106 ~~~~l~~~~~~~i~~~i~~gl~~LH~~~ivH~DlKp~NIll~~~~~~kl~DfGla~~~~~~~~~~~~~~~gt~~y~aPE~  185 (285)
T d1fmka3         106 TGKYLRLPQLVDMAAQIASGMAYVERMNYVHRDLRAANILVGENLVCKVADFGLARLIEDNEYTARQGAKFPIKWTAPEA  185 (285)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCTTC--------------CCGGGSCHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHhhhheecccccceEEEECCCCcEEEcccchhhhccCCCceeeccccccccccChHH
Confidence             3468899999999999999999999999999    9999999999999999999765322    234578999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      +.+..++.++|||||||++|+|++|..||....     ...+.+..+....                             
T Consensus       186 ~~~~~~~~ksDI~S~Giil~el~t~~~p~~~~~-----~~~~~~~~i~~~~-----------------------------  231 (285)
T d1fmka3         186 ALYGRFTIKSDVWSFGILLTELTTKGRVPYPGM-----VNREVLDQVERGY-----------------------------  231 (285)
T ss_dssp             HHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTC-----CHHHHHHHHHTTC-----------------------------
T ss_pred             HhCCCCCcHHhhhcchHHHHHHHhCCCCCCCCC-----CHHHHHHHHHhcC-----------------------------
Confidence            999999999999999999999999655543322     1333333332110                             


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc--CcCcCCCC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS--HPWMSAGP  297 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~--hpwf~~~~  297 (358)
                                  ..+.+..+++++.+||.+||+.||++|||+++|++  |+||+...
T Consensus       232 ------------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~~~~~~~  276 (285)
T d1fmka3         232 ------------RMPCPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTSTE  276 (285)
T ss_dssp             ------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSCSC
T ss_pred             ------------CCCCCcccCHHHHHHHHHHcccCHhHCcCHHHHHHHHhhhhcCCC
Confidence                        11234556788999999999999999999999988  89998753

>d1mp8a_ d.144.1.7 (A:) Focal adhesion kinase 1 (fak) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Focal adhesion kinase 1 (fak)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-39  Score=287.14  Aligned_cols=220  Identities=12%  Similarity=0.126  Sum_probs=170.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      ..+..||+|.+........++.+.++.+...++  .|++++.+.....  ++.+|+|||||+||+|.+++.. ...+++.
T Consensus        33 ~~~~~vaik~~~~~~~~~~~~~~~~E~~~l~~l--~HpnIv~l~~~~~--~~~~~iv~E~~~~g~l~~~~~~~~~~l~~~  108 (273)
T d1mp8a_          33 NPALAVAIKTCKNCTSDSVREKFLQEALTMRQF--DHPHIVKLIGVIT--ENPVWIIMELCTLGELRSFLQVRKYSLDLA  108 (273)
T ss_dssp             -CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTC--CCTTBCCEEEEEC--SSSCEEEEECCTTEEHHHHHHHTTTTSCHH
T ss_pred             ceeEEEEEEEeccccCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEe--cCeEEEEEEeccCCcHHhhhhccCCCCCHH
Confidence            345678999998888888888999998888774  6888888887653  4678999999999999997654 4467889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCCc
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      ++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .+...||+.|+|||++.+..|+.
T Consensus       109 ~~~~~~~qi~~gl~ylH~~~iiHrDlKp~NIll~~~~~~Kl~DfG~a~~~~~~~~~~~~~~~gt~~y~apE~l~~~~~~~  188 (273)
T d1mp8a_         109 SLILYAYQLSTALAYLESKRFVHRDIAARNVLVSSNDCVKLGDFGLSRYMEDSTYYKASKGKLPIKWMAPESINFRRFTS  188 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEEETTEEEECC-------------------CCGGGCCHHHHHHCCCSH
T ss_pred             HHHHHHHHHHHHhhhhcccCeeccccchhheeecCCCcEEEccchhheeccCCcceeccceecCcccchhhHhccCCCCC
Confidence            999999999999999999999998    9999999999999999999765422    33457899999999999999999


Q ss_pred             chhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          171 SADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       171 ~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      ++|||||||++|||++ |.+||.+.+      ..+....+..  +.                                  
T Consensus       189 ~~DiwSlGvil~e~lt~g~~P~~~~~------~~~~~~~i~~--~~----------------------------------  226 (273)
T d1mp8a_         189 ASDVWMFGVCMWEILMHGVKPFQGVK------NNDVIGRIEN--GE----------------------------------  226 (273)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCTTTTCC------GGGHHHHHHT--TC----------------------------------
T ss_pred             ccccccchHHHHHHHhcCCCCCCCCC------HHHHHHHHHc--CC----------------------------------
Confidence            9999999999999998 899997554      2222222211  00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                           ....++.+++.+.+||.+||+.||++|||++|+++|
T Consensus       227 -----~~~~~~~~~~~~~~li~~cl~~dp~~Rps~~ei~~~  262 (273)
T d1mp8a_         227 -----RLPMPPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQ  262 (273)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -----CCCCCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                 113445567899999999999999999999999875

>d1o6ya_ d.144.1.7 (A:) Mycobacterial protein kinase PknB, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Mycobacterial protein kinase PknB, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=1.2e-39  Score=289.36  Aligned_cols=228  Identities=20%  Similarity=0.234  Sum_probs=172.4

Q ss_pred             ccCcccccccccCccchhh--hHHhhHHHHHhhhhccCCCccccccCCCCCC---CCCCCcccccCCCCCcccccccccc
Q 045353           20 ESSASKENKSLYGDLTKNQ--KKKVKKKAKKAAQGCAGTEAFDESEADSKPS---SPDNFSVDTIPNGVSVEERQNDSVV   94 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~iv~e~~~gg~L~~~~~~~~~   94 (358)
                      .+|..+|+|++......++  ..++.++.+....  ..|++++.........   ...+|+|||||+||+|.+++.....
T Consensus        30 ~~~~~vAiK~i~~~~~~~~~~~~~~~~E~~~l~~--~~hpniv~~~~~~~~~~~~~~~~~lvmE~~~g~~L~~~~~~~~~  107 (277)
T d1o6ya_          30 RLHRDVAVKVLRADLARDPSFYLRFRREAQNAAA--LNHPAIVAVYDTGEAETPAGPLPYIVMEYVDGVTLRDIVHTEGP  107 (277)
T ss_dssp             TTTEEEEEEEECSTTTTCHHHHHHHHHHHHHHHT--CCCTTBCCEEEEEEEECSSSEEEEEEEECCCEEEHHHHHHHHCS
T ss_pred             CCCCEEEEEEEchhhccCHHHHHHHHHHHHHHHh--cCCCCCCcccceeeeccCCCceEEEEEECCCCCEehhhhcccCC
Confidence            5688999999987765543  4567777776655  5778888876655432   3357999999999999999988888


Q ss_pred             cChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC------CCCCCccCCCcchhHHHh
Q 045353           95 NNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK------QFTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        95 ~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~------~~~~~~gt~~Y~aPE~l~  164 (358)
                      +++.++..++.|++.|+.|+|+.+++||    +|||++.++.++|+|||.+.....      .....+||+.|+|||++.
T Consensus       108 l~~~~~~~i~~qi~~al~~lH~~~iiHrDiKP~NIll~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~Gt~~Y~aPE~~~  187 (277)
T d1o6ya_         108 MTPKRAIEVIADACQALNFSHQNGIIHRDVKPANIMISATNAVKVMDFGIARAIADSGNSVTQTAAVIGTAQYLSPEQAR  187 (277)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEEETTSCEEECCCTTCEECC----------------TTCCHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhCCccCccccCcccccCccccceeehhhhhhhhccccccccccccccCcccccCHHHHc
Confidence            9999999999999999999999999999    999999999999999999865432      234558999999999999


Q ss_pred             CCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhcc
Q 045353          165 GSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLR  244 (358)
Q Consensus       165 ~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (358)
                      +..|+.++||||+||++|+|++|++||.+.+      ..+.+..+...-..+|                           
T Consensus       188 ~~~~~~~~DiwSlGvilyelltG~~Pf~~~~------~~~~~~~~~~~~~~~~---------------------------  234 (277)
T d1o6ya_         188 GDSVDARSDVYSLGCVLYEVLTGEPPFTGDS------PVSVAYQHVREDPIPP---------------------------  234 (277)
T ss_dssp             TCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS------HHHHHHHHHHCCCCCG---------------------------
T ss_pred             CCCCCcceecccchHHHHHHHhCCCCCCCcC------HHHHHHHHHhcCCCCC---------------------------
Confidence            9999999999999999999999999997544      3333332221111111                           


Q ss_pred             CCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-CHHHHhcCcCcC
Q 045353          245 FWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-TAAQCLSHPWMS  294 (358)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-ta~elL~hpwf~  294 (358)
                                 ......+++.+.+||.+||+.||.+|| |++++ .|+|.+
T Consensus       235 -----------~~~~~~~s~~l~~li~~~L~~dp~~R~~sa~~l-~~~l~r  273 (277)
T d1o6ya_         235 -----------SARHEGLSADLDAVVLKALAKNPENRYQTAAEM-RADLVR  273 (277)
T ss_dssp             -----------GGTSSSCCHHHHHHHHHHTCSSGGGSCSSHHHH-HHHHHH
T ss_pred             -----------chhccCCCHHHHHHHHHHccCCHhHCHhHHHHH-HHHHHH
Confidence                       112334578899999999999999999 55554 566653

>d1opja_ d.144.1.7 (A:) Abelsone tyrosine kinase (abl) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Abelsone tyrosine kinase (abl)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-38  Score=284.29  Aligned_cols=219  Identities=16%  Similarity=0.170  Sum_probs=172.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc--ccccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND--SVVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~--~~~~~~   97 (358)
                      .+|..||+|.+..+..  ..+.+.++.+....+  .|++++....... .....|||||||++|+|.+++..  ...+++
T Consensus        40 ~~~~~vAvK~i~~~~~--~~~~~~~E~~il~~l--~HpnIv~~~~~~~-~~~~~~iv~E~~~~g~l~~~l~~~~~~~~~~  114 (287)
T d1opja_          40 KYSLTVAVKTLKEDTM--EVEEFLKEAAVMKEI--KHPNLVQLLGVCT-REPPFYIITEFMTYGNLLDYLRECNRQEVSA  114 (287)
T ss_dssp             GGTEEEEEEECCTTCS--CHHHHHHHHHHHHHC--CCTTBCCEEEEEC-SSSSCEEEEECCTTCBHHHHHHHSCTTTSCH
T ss_pred             CCCeEEEEEEECCccc--hHHHHHHHHHHHHhC--CCCCEecCCccEe-eCCeeEEEeecccCcchHHHhhhccccchHH
Confidence            4577899999876543  455678888777764  6888888887654 34678999999999999998853  456788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCCCC
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSKYS  169 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~~~  169 (358)
                      ..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....||+.|+|||++.+..|+
T Consensus       115 ~~~~~i~~qi~~gL~yLH~~~iiHrDlKp~NILl~~~~~~Kl~DFG~a~~~~~~~~~~~~~~~g~~~y~aPE~~~~~~~~  194 (287)
T d1opja_         115 VVLLYMATQISSAMEYLEKKNFIHRDLAARNCLVGENHLVKVADFGLSRLMTGDTYTAHAGAKFPIKWTAPESLAYNKFS  194 (287)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCCCTTTCCSSSSEEETTEEECGGGCCHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHHCCcccCccccCeEEECCCCcEEEccccceeecCCCCceeeccccccccccChHHHcCCCCC
Confidence            8999999999999999999999999    9999999999999999999875432    2334688999999999999999


Q ss_pred             cchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcch
Q 045353          170 TSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMN  249 (358)
Q Consensus       170 ~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (358)
                      .++|||||||++|+|++|..||....      +...+..+... +.                                  
T Consensus       195 ~k~DiwS~Gv~l~ell~~~~p~~~~~------~~~~~~~~i~~-~~----------------------------------  233 (287)
T d1opja_         195 IKSDVWAFGVLLWEIATYGMSPYPGI------DLSQVYELLEK-DY----------------------------------  233 (287)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSTTC------CHHHHHHHHHT-TC----------------------------------
T ss_pred             chhhhhhHHHHHHHHHhCCCCCCCcc------hHHHHHHHHhc-CC----------------------------------
Confidence            99999999999999999776654322      22222211110 00                                  


Q ss_pred             hhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          250 KVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       250 ~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                           ....+..+++.+.+||.+||+.||++|||++|+++
T Consensus       234 -----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ei~~  268 (287)
T d1opja_         234 -----RMERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQ  268 (287)
T ss_dssp             -----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----CCCCCccchHHHHHHHHHHcCCCHhHCcCHHHHHH
Confidence                 11234456788999999999999999999999976

>d1k2pa_ d.144.1.7 (A:) Bruton's tyrosine kinase (Btk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Bruton's tyrosine kinase (Btk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.3e-39  Score=280.49  Aligned_cols=226  Identities=14%  Similarity=0.141  Sum_probs=179.1

Q ss_pred             cccccccccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-
Q 045353           13 KTDKVVTESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-   91 (358)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-   91 (358)
                      .|-+....++..||+|.+..+-  ..+..+.++.+...+  ..|++++........ +..+|+|||||++|+|.+++.. 
T Consensus        19 ~Vy~~~~~~~~~vAvK~l~~~~--~~~~~~~~Ev~~~~~--l~HpnIv~~~g~~~~-~~~~~iv~Ey~~~g~l~~~~~~~   93 (258)
T d1k2pa_          19 VVKYGKWRGQYDVAIKMIKEGS--MSEDEFIEEAKVMMN--LSHEKLVQLYGVCTK-QRPIFIITEYMANGCLLNYLREM   93 (258)
T ss_dssp             EEEEEEETTTEEEEEEEEESSS--SCHHHHHHHHHHHHT--CCCTTBCCEEEEECC-SSSEEEEEECCTTEEHHHHHHSG
T ss_pred             EEEEEEECCCCEEEEEEECcCc--CCHHHHHHHHHHHHh--cCCCceeeEEEEEee-CCceEEEEEccCCCcHHHhhhcc
Confidence            3444455677789999987542  334567788777776  468888888876543 4678999999999999998554 


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHH
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVL  163 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l  163 (358)
                      .....+..+..++.|+++|+.|+|+.+++||    +|||+++++.+||+|||+|+.....    .....||+.|+|||++
T Consensus        94 ~~~~~~~~~~~i~~qi~~gl~~LH~~~iiH~dlk~~Nill~~~~~~kl~DfG~a~~~~~~~~~~~~~~~~t~~y~aPE~~  173 (258)
T d1k2pa_          94 RHRFQTQQLLEMCKDVCEAMEYLESKQFLHRDLAARNCLVNDQGVVKVSDFGLSRYVLDDEYTSSVGSKFPVRWSPPEVL  173 (258)
T ss_dssp             GGCCCHHHHHHHHHHHHHHHHHHHHTTBCCSCCSGGGEEECTTCCEEECCCSSCCBCSSSSCCCCCCSCCCGGGCCHHHH
T ss_pred             ccCCcHHHHHHHHHHHHHHHHHHhhcCcccccccceeEEEcCCCcEEECcchhheeccCCCceeecccCCCCCcCCcHHh
Confidence            4567788999999999999999999999999    9999999999999999999765432    2345789999999999


Q ss_pred             hCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhh
Q 045353          164 LGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRR  242 (358)
Q Consensus       164 ~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~  242 (358)
                      .+..|+.++|||||||++|||++ |+.||.+.+      ..+....+....                             
T Consensus       174 ~~~~~~~ksDiwS~G~~l~el~t~g~~Pf~~~~------~~~~~~~i~~~~-----------------------------  218 (258)
T d1k2pa_         174 MYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFT------NSETAEHIAQGL-----------------------------  218 (258)
T ss_dssp             HHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSC------HHHHHHHHHTTC-----------------------------
T ss_pred             cCCCCCcceeecccchhhHhHHhcCCCCCCCCC------HHHHHHHHHhCC-----------------------------
Confidence            99999999999999999999998 899997554      333333332111                             


Q ss_pred             ccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          243 LRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                  ....+...++.+.+||.+||+.||++|||++++|+|
T Consensus       219 ------------~~~~p~~~~~~l~~li~~cl~~dP~~RPt~~eil~~  254 (258)
T d1k2pa_         219 ------------RLYRPHLASEKVYTIMYSCWHEKADERPTFKILLSN  254 (258)
T ss_dssp             ------------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHH
T ss_pred             ------------CCCCcccccHHHHHHHHHHccCCHhHCcCHHHHHHH
Confidence                        112234456789999999999999999999999987

>d1q8ya_ d.144.1.7 (A:) Sky1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Sky1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.4e-38  Score=289.99  Aligned_cols=277  Identities=34%  Similarity=0.573  Sum_probs=210.6

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhc---------cCCCccccccCCCCC-CCCCCCcccccCCCCCccccc
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGC---------AGTEAFDESEADSKP-SSPDNFSVDTIPNGVSVEERQ   89 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~-~~~~~~iv~e~~~gg~L~~~~   89 (358)
                      .+|..||+|++......  .....++.+....+.         ..+.+++.+...... .....+.+|+++.++......
T Consensus        36 ~~g~~vAvKvi~~~~~~--~~~~~~Ei~~l~~l~~~~~~~~~~~~~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  113 (362)
T d1q8ya_          36 VNNTHVAMKIVRGDKVY--TEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFNHKGPNGVHVVMVFEVLGENLLAL  113 (362)
T ss_dssp             TTTEEEEEEEECSCHHH--HHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEEEEETTEEEEEEEECCCCEEHHHH
T ss_pred             CCCCEEEEEEEeccccc--hHHHHHHHHHHHHhcchhhhhhhhcCcCceEEEEEEeeeccccceeeeeeecccccccccc
Confidence            57889999999865322  223333333222221         233456655544332 234455677777666543322


Q ss_pred             ---ccccccChhhhhHHHHhhhhccccccC-CCCCCc----ccccccCCC------cEEEEecCCceecCCCCCCCccCC
Q 045353           90 ---NDSVVNNESSRDNEVKNTSQGVKGHRR-PSRATR----KNLLAAVDV------QCKLVDFGNACWTHKQFTNDIQTR  155 (358)
Q Consensus        90 ---~~~~~~~~~~~~~~l~~~~~~~~~~h~-~~~~hr----~NILl~~~~------~vkL~DFG~a~~~~~~~~~~~gt~  155 (358)
                         .......+..+..++.|++.|+.++|. .|++||    +|||++.++      .+||+|||.|..........+||+
T Consensus       114 ~~~~~~~~~~~~~i~~i~~qil~al~~lh~~~~IvHrDlKp~NIll~~~~~~~~~~~~kl~dfg~s~~~~~~~~~~~gt~  193 (362)
T d1q8ya_         114 IKKYEHRGIPLIYVKQISKQLLLGLDYMHRRCGIIHTDIKPENVLMEIVDSPENLIQIKIADLGNACWYDEHYTNSIQTR  193 (362)
T ss_dssp             HHHTTTSCCCHHHHHHHHHHHHHHHHHHHHTTCEECSCCSGGGEEEEEEETTTTEEEEEECCCTTCEETTBCCCSCCSCG
T ss_pred             cccccccCCcHHHHHHHHHHHHHHHHHHhhhcCcccccCChhHeeeeccCcccccceeeEeecccccccccccccccccc
Confidence               244567888999999999999999996 899999    999998665      389999999988887777889999


Q ss_pred             CcchhHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccC
Q 045353          156 QYRCPEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHG  235 (358)
Q Consensus       156 ~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~  235 (358)
                      .|+|||++.+..|+.++||||+||++++|++|+.||.+..........+.+..++..+|.+|..+.........++....
T Consensus       194 ~y~aPE~~~~~~~~~~~DiwSlG~il~el~~g~~pF~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~  273 (362)
T d1q8ya_         194 EYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEPDEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRG  273 (362)
T ss_dssp             GGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC---------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--
T ss_pred             cccChhhccccCCCccccccchHHHHHHHHHCCCCCCCCccccccchhHHHHHHHHHhCCCCHHHhhcccccccccccch
Confidence            99999999999999999999999999999999999988776666667889999999999999998888777777877777


Q ss_pred             CchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCCCCC
Q 045353          236 DLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSAGPQ  298 (358)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~~~~  298 (358)
                      ..........++..........+....++.+.+||.+||++||.+||||+|||+||||++...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dll~~mL~~dP~~Rpta~e~L~Hp~f~~~~~  336 (362)
T d1q8ya_         274 LLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPMLQLDPRKRADAGGLVNHPWLKDTLG  336 (362)
T ss_dssp             CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGGGCSSTTTCBCHHHHHTCGGGTTCTT
T ss_pred             hhhccccccCCchhhhcccccccCcccCHHHHHHHHHHCCCChhHCcCHHHHhcCcccCCCCC
Confidence            777777777777777777777888889999999999999999999999999999999996543

>d1unla_ d.144.1.7 (A:) Cyclin-dependent PK, CDK5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Cyclin-dependent PK, CDK5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.1e-38  Score=280.54  Aligned_cols=261  Identities=21%  Similarity=0.187  Sum_probs=197.2

Q ss_pred             ccccc-cccCcccccccccCcc-chhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc
Q 045353           14 TDKVV-TESSASKENKSLYGDL-TKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND   91 (358)
Q Consensus        14 ~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~   91 (358)
                      |-+.. ..+|..||+|++.... .+....++.++.+....  ..+++++....... .....++||||+.|++|..++..
T Consensus        18 V~~~~~~~~~~~vAvK~i~~~~~~~~~~~~~~~E~~il~~--l~h~niv~~~~~~~-~~~~~~iv~~~~~~~~l~~~~~~   94 (292)
T d1unla_          18 VFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKE--LKHKNIVRLHDVLH-SDKKLTLVFEFCDQDLKKYFDSC   94 (292)
T ss_dssp             EEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTT--CCCTTBCCEEEEEE-CSSEEEEEEECCSEEHHHHHHHT
T ss_pred             EEEEEECCCCcEEEEEEEehhhCChHHHHHHHHHHHHHHh--cCcCCEEeeccccc-cccceeEEeeecccccccccccc
Confidence            33444 3567789999986543 33456777788777766  46777777665544 34567899999999999999888


Q ss_pred             ccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC---CCCCccCCCcchhHHHh
Q 045353           92 SVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ---FTNDIQTRQYRCPEVLL  164 (358)
Q Consensus        92 ~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~---~~~~~gt~~Y~aPE~l~  164 (358)
                      .....+..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||.|+.....   .....+++.|+|||++.
T Consensus        95 ~~~~~~~~~~~~~~q~~~aL~~lH~~~IvHrDiKP~NIli~~~~~~kl~DFG~a~~~~~~~~~~~~~~~~~~~~~pe~~~  174 (292)
T d1unla_          95 NGDLDPEIVKSFLFQLLKGLGFCHSRNVLHRDLKPQNLLINRNGELKLANFGLARAFGIPVRCYSAEVVTLWYRPPDVLF  174 (292)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHTTEECCCCSGGGEEECTTCCEEECCCTTCEECCSCCSCCCSCCSCGGGCCHHHHT
T ss_pred             ccccchhHHHHHHHHHHHHHHHhhcCCEeeecccCcccccccCCceeeeecchhhcccCCCccceeeccccchhhhhHhc
Confidence            8889999999999999999999999999999    9999999999999999999876543   33446788999999998


Q ss_pred             CCC-CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhc
Q 045353          165 GSK-YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRL  243 (358)
Q Consensus       165 ~~~-~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (358)
                      +.. ++.++||||+||++|+|++|+.||....     ...+++..+....+.++...+........+.            
T Consensus       175 ~~~~~~~~~DiwSlG~il~ell~g~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------  237 (292)
T d1unla_         175 GAKLYSTSIDMWSAGCIFAELANAGRPLFPGN-----DVDDQLKRIFRLLGTPTEEQWPSMTKLPDYK------------  237 (292)
T ss_dssp             TCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCS-----SHHHHHHHHHHHHCCCCTTTCTTGGGSTTCC------------
T ss_pred             cCCCCCchhhccccchHHHHHhhCCCCCCCCC-----CHHHHHHHHHhhcCCCChhhhhhhhhccccc------------
Confidence            876 6999999999999999999998875332     2567788888888877654432211110000            


Q ss_pred             cCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCcCcCC
Q 045353          244 RFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHPWMSA  295 (358)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hpwf~~  295 (358)
                       ..+...............++.+.+||.+||++||.+||||+|+|+||||++
T Consensus       238 -~~~~~~~~~~~~~~~~~~s~~~~dll~~mL~~dP~~R~sa~e~L~Hp~f~~  288 (292)
T d1unla_         238 -PYPMYPATTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQHPYFSD  288 (292)
T ss_dssp             -CCCCCCTTCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHTTSGGGSS
T ss_pred             -ccccccccchhhhccccCCHHHHHHHHHHccCChhHCcCHHHHhcChhhcC
Confidence             000000001112234456788999999999999999999999999999986

>d1vzoa_ d.144.1.7 (A:) Ribosomal protein S6 kinase alpha 5, Msk1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Ribosomal protein S6 kinase alpha 5, Msk1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-39  Score=291.30  Aligned_cols=230  Identities=15%  Similarity=0.148  Sum_probs=180.3

Q ss_pred             ccCcccccccccCccc-h--hhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLT-K--NQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..+|+|.+..... +  ....++.++.+....+. ++++++.+...... ....|+|||||.||+|.+++.......
T Consensus        50 ~~g~~vAvK~i~~~~~~~~~~~~~~~~~E~~il~~l~-h~pnIv~~~~~~~~-~~~~~~v~e~~~~~~L~~~i~~~~~~~  127 (322)
T d1vzoa_          50 DTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIR-QSPFLVTLHYAFQT-ETKLHLILDYINGGELFTHLSQRERFT  127 (322)
T ss_dssp             TTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHH-TCTTBCCEEEEEEE-TTEEEEEECCCCSCBHHHHHHHHSCCC
T ss_pred             CCCcEEEEEEEehHHhccchHHHHHHHHHHHHHHhcc-CCCeEEEeeeeecc-CCceeeeeecccccHHHHHHHhccccc
Confidence            3577899999876532 2  23466778887777753 44566666554433 457899999999999999999888889


Q ss_pred             hhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC----CCCCccCCCcchhHHHhCCC-
Q 045353           97 ESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ----FTNDIQTRQYRCPEVLLGSK-  167 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~----~~~~~gt~~Y~aPE~l~~~~-  167 (358)
                      +..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....    .....||+.|+|||.+.+.. 
T Consensus       128 e~~~~~~~~Qi~~al~~lH~~~ivHrDiKp~Nill~~~~~vkL~DFG~a~~~~~~~~~~~~~~~g~~~~~~pe~~~~~~~  207 (322)
T d1vzoa_         128 EHEVQIYVGEIVLALEHLHKLGIIYRDIKLENILLDSNGHVVLTDFGLSKEFVADETERAYDFCGTIEYMAPDIVRGGDS  207 (322)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCCCCGGGEEECTTSCEEESCSSEEEECCGGGGGGGCGGGSCCTTCCHHHHTTCC-
T ss_pred             HHHHHHHHHHHHHHHHHhhcCCEEeccCCccceeecCCCCEEEeeccchhhhcccccccccccccccccchhHHhhcCCc
Confidence            99999999999999999999999999    9999999999999999999765432    34458999999999998754 


Q ss_pred             -CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCC
Q 045353          168 -YSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFW  246 (358)
Q Consensus       168 -~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (358)
                       ++.++|||||||++|+|++|..||.+.+...   ....+...                                     
T Consensus       208 ~~~~ksDIWSlG~iLyelltG~~PF~~~~~~~---~~~~i~~~-------------------------------------  247 (322)
T d1vzoa_         208 GHDKAVDWWSLGVLMYELLTGASPFTVDGEKN---SQAEISRR-------------------------------------  247 (322)
T ss_dssp             --CTHHHHHHHHHHHHHHHHSSCTTSCTTSCC---CHHHHHHH-------------------------------------
T ss_pred             CCCchhhhHHHHHHHHHHHhCCCCCCCCCHHH---HHHHHHHh-------------------------------------
Confidence             6889999999999999999999997665322   11111110                                     


Q ss_pred             cchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCC-----CHHHHhcCcCcCC
Q 045353          247 PMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRP-----TAAQCLSHPWMSA  295 (358)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~-----ta~elL~hpwf~~  295 (358)
                          .......++...++++.+||.+||++||.+||     |++|+|+||||+.
T Consensus       248 ----~~~~~~~~~~~~s~~~~~li~~~l~~dP~~R~s~~~~t~~eil~Hpff~~  297 (322)
T d1vzoa_         248 ----ILKSEPPYPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEHLFFQK  297 (322)
T ss_dssp             ----HHHCCCCCCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTSGGGTT
T ss_pred             ----cccCCCCCcccCCHHHHHHHHHHcccCHHHcCCCCcccHHHHHcCHhhcC
Confidence                01111233455688999999999999999999     5899999999986

>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: epha2 receptor tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-37  Score=276.76  Aligned_cols=218  Identities=14%  Similarity=0.147  Sum_probs=169.2

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~~~~  101 (358)
                      ..||+|.+....++..+..+.++++...++  .|++++........ ...+|+|||||.+|++.+++... ..+++.++.
T Consensus        37 ~~vAvK~~~~~~~~~~~~~~~~E~~il~~l--~H~nIv~~~g~~~~-~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~  113 (283)
T d1mqba_          37 VPVAIKTLKAGYTEKQRVDFLGEAGIMGQF--SHHNIIRLEGVISK-YKPMMIITEYMENGALDKFLREKDGEFSVLQLV  113 (283)
T ss_dssp             EEEEEEEECTTCCHHHHHHHHHHHHHHHTC--CCTTBCCEEEEECS-SSSEEEEEECCTTEEHHHHHHHTTTCSCHHHHH
T ss_pred             EEEEEEEECcccChHHHHHHHHHHHHHHhc--CCCCEeeeeEEEec-CCceEEEEEecccCcchhhhhcccccccHHHHH
Confidence            468999999988888888898888877774  67888888776543 45789999999999999977643 568889999


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCCCcc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKYSTS  171 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~~~~  171 (358)
                      .++.+++.|+.|+|+.+++||    +||||+.++.+||+|||+|+.....      .....||+.|+|||++.+..|+.+
T Consensus       114 ~i~~~i~~gl~~lH~~~iiHrDlKp~NILl~~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~gt~~Y~APE~l~~~~~~~~  193 (283)
T d1mqba_         114 GMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYTTSGGKIPIRWTAPEAISYRKFTSA  193 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCCGGGEEECTTCCEEECCCCC-----------------CCCGGGSCHHHHHSCCCCHH
T ss_pred             HHHHHHHHhhhhccccccccCccccceEEECCCCeEEEcccchhhcccCCCccceEeccCCCCccccCHHHHccCCCCCc
Confidence            999999999999999999999    9999999999999999999765322      223468999999999999999999


Q ss_pred             hhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhh
Q 045353          172 ADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKV  251 (358)
Q Consensus       172 ~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (358)
                      +|||||||++|||++|..||....     ...+.+..+..-  .                                    
T Consensus       194 sDI~S~Gvil~el~t~~~~~~~~~-----~~~~~~~~i~~~--~------------------------------------  230 (283)
T d1mqba_         194 SDVWSFGIVMWEVMTYGERPYWEL-----SNHEVMKAINDG--F------------------------------------  230 (283)
T ss_dssp             HHHHHHHHHHHHHHTTSCCTTTTC-----CHHHHHHHHHTT--C------------------------------------
T ss_pred             ccccccHHHHHHHHhCCCCccccC-----CHHHHHHHHhcc--C------------------------------------
Confidence            999999999999999665553322     122222222110  0                                    


Q ss_pred             HHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          252 LVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       252 ~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                         ....+..++..+.+||.+||+.||++|||+.|+++
T Consensus       231 ---~~~~~~~~~~~l~~li~~cl~~~p~~RPt~~eil~  265 (283)
T d1mqba_         231 ---RLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVS  265 (283)
T ss_dssp             ---CCCCCTTCBHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred             ---CCCCchhhHHHHHHHHHHHCcCCHhHCcCHHHHHH
Confidence               11233445678999999999999999999999976

>d1byga_ d.144.1.7 (A:) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-38  Score=278.05  Aligned_cols=219  Identities=16%  Similarity=0.141  Sum_probs=166.4

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--cccCh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--VVNNE   97 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--~~~~~   97 (358)
                      .+|..||+|.+..+   ..++.+.++.+...+.  .|++++.+........+.+|+|||||++|+|.+++...  ..+++
T Consensus        28 ~~~~~vAvK~i~~~---~~~~~~~~E~~~l~~l--~HpnIv~~~g~~~~~~~~~~lv~ey~~~g~L~~~l~~~~~~~l~~  102 (262)
T d1byga_          28 YRGNKVAVKCIKND---ATAQAFLAEASVMTQL--RHSNLVQLLGVIVEEKGGLYIVTEYMAKGSLVDYLRSRGRSVLGG  102 (262)
T ss_dssp             ETTEEEEEEECCCC---C--HHHHHTHHHHTTC--CCTTBCCEEEEECCC--CCEEEECCCTTEEHHHHHHHHHHHHCCH
T ss_pred             ECCeEEEEEEECcH---HHHHHHHHHHHHHHhC--CCCCEeeEEEEEEecCCcEEEEEeccCCCCHHHHHHhcCCCCCCH
Confidence            35788999999653   3456678888777764  68899998876554556789999999999999998653  34788


Q ss_pred             hhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCCCCCccCCCcchhHHHhCCCCCcchh
Q 045353           98 SSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQFTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus        98 ~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ..+..++.+++.|+.|+|+.+++|+    +|||++.++.+||+|||+++..........+|+.|+|||++.+..|+.++|
T Consensus       103 ~~~~~i~~~i~~al~ylH~~~ivH~dlkp~Nil~~~~~~~kl~dfg~s~~~~~~~~~~~~~~~y~aPE~l~~~~~t~~sD  182 (262)
T d1byga_         103 DCLLKFSLDVCEAMEYLEGNNFVHRDLAARNVLVSEDNVAKVSDFGLTKEASSTQDTGKLPVKWTAPEALREKKFSTKSD  182 (262)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTSCEEECCCCC------------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHhhccccccCceeccccchHhheecCCCCEeecccccceecCCCCccccccccCCChHHHhCCCCChHHH
Confidence            8999999999999999999999999    999999999999999999988777666778999999999999999999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|||++ |.+||...+.      .+....+..  +                                      
T Consensus       183 IwSfG~il~el~t~~~~p~~~~~~------~~~~~~i~~--~--------------------------------------  216 (262)
T d1byga_         183 VWSFGILLWEIYSFGRVPYPRIPL------KDVVPRVEK--G--------------------------------------  216 (262)
T ss_dssp             HHHHHHHHHHHHTTSCCSCTTSCG------GGHHHHHTT--T--------------------------------------
T ss_pred             HHhHHHHHHHHHHCCCCCCCCCCH------HHHHHHHHc--C--------------------------------------
Confidence            9999999999998 7888864431      111111100  0                                      


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                       ....++...++.+.+||.+||+.||.+|||+.+++++
T Consensus       217 -~~~~~~~~~~~~~~~li~~cl~~dP~~Rps~~~l~~~  253 (262)
T d1byga_         217 -YKMDAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQ  253 (262)
T ss_dssp             -CCCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -CCCCCCccCCHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence             0123455567889999999999999999999999764

>d1fgka_ d.144.1.7 (A:) Fibroblast growth factor receptor 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Fibroblast growth factor receptor 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.7e-37  Score=276.11  Aligned_cols=221  Identities=18%  Similarity=0.201  Sum_probs=178.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..||+|.+..+.++.....+.++.....+. ..|++++........ +..+|+|||||+||+|.+++...       
T Consensus        43 ~~~~~vAvK~~~~~~~~~~~~~~~~e~~~l~~~-~~HpnIv~~~~~~~~-~~~~~~v~e~~~~g~l~~~i~~~~~~~~~~  120 (299)
T d1fgka_          43 NRVTKVAVKMLKSDATEKDLSDLISEMEMMKMI-GKHKNIINLLGACTQ-DGPLYVIVEYASKGNLREYLQARRPPGLEY  120 (299)
T ss_dssp             CCEEEEEEECCCTTCCHHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSSCEEEECCCTTCBHHHHHHTTSCC----
T ss_pred             cCceEEEEEEECcccChHHHHHHHHHHHHHHHh-cCCCeEEeccccccc-CCeEEEEEEccCCCcHHHHHHhhcCCcccc
Confidence            344578999999999888888888887776665 368888888776653 56799999999999999988643       


Q ss_pred             ---------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccC
Q 045353           93 ---------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQT  154 (358)
Q Consensus        93 ---------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt  154 (358)
                               ..+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+++.....     ....+||
T Consensus       121 ~~~~~~~~~~~l~~~~~~~~~~qi~~al~ylH~~~ivHrDiKp~NiLl~~~~~~kl~dfg~~~~~~~~~~~~~~~~~~~~  200 (299)
T d1fgka_         121 SYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASKKCIHRDLAARNVLVTEDNVMKIADFGLARDIHHIDYYKKTTNGRLP  200 (299)
T ss_dssp             --------CCCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSTTCCCCGGGCCTTCCCTTSCCG
T ss_pred             ccccccCccccCCHHHHHHHHHHHHHHHHHhhhCCEEeeeecccceeecCCCCeEeccchhhccccccccccccccCCCC
Confidence                     246888999999999999999999999999    9999999999999999999765432     3345789


Q ss_pred             CCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhc
Q 045353          155 RQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNR  233 (358)
Q Consensus       155 ~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~  233 (358)
                      +.|+|||++.+..|+.++|||||||++|+|++ |.+||.+.+      .......+. . +.                  
T Consensus       201 ~~y~aPE~l~~~~y~~k~DiwS~Gvvl~ell~~g~~p~~~~~------~~~~~~~i~-~-~~------------------  254 (299)
T d1fgka_         201 VKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSPYPGVP------VEELFKLLK-E-GH------------------  254 (299)
T ss_dssp             GGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCC------HHHHHHHHH-T-TC------------------
T ss_pred             hhhhhhhHhcCCCCCchhhhHHhHHHHHHhccCCCCCCCCCC------HHHHHHHHH-c-CC------------------
Confidence            99999999999999999999999999999998 688886443      222211111 0 11                  


Q ss_pred             cCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          234 HGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                           ....+..+++.+.+||.+||+.||++|||+.||++
T Consensus       255 ---------------------~~~~p~~~~~~l~~li~~cl~~dP~~Rps~~eil~  289 (299)
T d1fgka_         255 ---------------------RMDKPSNCTNELYMMMRDCWHAVPSQRPTFKQLVE  289 (299)
T ss_dssp             ---------------------CCCCCSSCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             ---------------------CCCCCccchHHHHHHHHHHccCCHhHCcCHHHHHH
Confidence                                 11234455788999999999999999999999986

>d1lufa_ d.144.1.7 (A:) Musk tyrosine kinase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Musk tyrosine kinase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=3.4e-37  Score=276.71  Aligned_cols=220  Identities=13%  Similarity=0.130  Sum_probs=174.8

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..||+|.+.....++..+++.++.+...+  +.|++++........ ....++||||+.+|+|.+++...       
T Consensus        41 ~~~~~vAvK~i~~~~~~~~~~~~~~E~~il~~--l~h~niv~~~~~~~~-~~~~~~v~e~~~~g~L~~~l~~~~~~~~~~  117 (301)
T d1lufa_          41 EPFTMVAVKMLKEEASADMQADFQREAALMAE--FDNPNIVKLLGVCAV-GKPMCLLFEYMAYGDLNEFLRSMSPHTVCS  117 (301)
T ss_dssp             SSEEEEEEEECCTTCCHHHHHHHHHHHHHHHT--CCCTTBCCEEEEECS-SSSCEEEEECCTTCBHHHHHHHTCC-----
T ss_pred             CCCeEEEEEEEChhcChHHHHHHHHHHHHHHh--cCCCCcccceeeecc-CCceEEEEEecCCCcHHHHHHhcCcccccc
Confidence            34567899999988888888899999888776  467777777776553 56789999999999999987532       


Q ss_pred             -----------------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCC-----
Q 045353           93 -----------------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHK-----  146 (358)
Q Consensus        93 -----------------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-----  146 (358)
                                       ..++..++..++.+++.|+.|+|+.+++||    +|||++.++.+||+|||+|+....     
T Consensus       118 ~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~gl~ylH~~~ivHrDlKp~NILld~~~~~Kl~DFGls~~~~~~~~~~  197 (301)
T d1lufa_         118 LSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSERKFVHRDLATRNCLVGENMVVKIADFGLSRNIYSADYYK  197 (301)
T ss_dssp             -----------------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEECGGGCEEECCCSCHHHHTGGGCBC
T ss_pred             ccccccchhhhccccCCCCCCHHHHHHHHHHHHHHhhhcccCCeEeeEEcccceEECCCCcEEEccchhheeccCCcccc
Confidence                             125677899999999999999999999999    999999999999999999975432     


Q ss_pred             CCCCCccCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhcCC-cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCC
Q 045353          147 QFTNDIQTRQYRCPEVLLGSKYSTSADLWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGR  225 (358)
Q Consensus       147 ~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~  225 (358)
                      ..+..+||+.|+|||++.+..|+.++|||||||++|||++|. +||.+.+      ..+.+..+.+  +.          
T Consensus       198 ~~~~~~~~~~y~aPE~~~~~~~t~ksDVwS~Gvvl~ell~~~~~p~~~~~------~~e~~~~v~~--~~----------  259 (301)
T d1lufa_         198 ADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIFSYGLQPYYGMA------HEEVIYYVRD--GN----------  259 (301)
T ss_dssp             ----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSC------HHHHHHHHHT--TC----------
T ss_pred             ccCCCCcCcCcCCHHHHccCCCChhhhhccchhhHHHHHccCCCCCCCCC------HHHHHHHHHc--CC----------
Confidence            233457899999999999999999999999999999999985 6776443      3333332211  10          


Q ss_pred             CChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          226 YSRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                                   ....+..+++++.+||.+||+.||++|||+.||++
T Consensus       260 -----------------------------~~~~p~~~~~~~~~li~~cl~~~P~~RPt~~ev~~  294 (301)
T d1lufa_         260 -----------------------------ILACPENCPLELYNLMRLCWSKLPADRPSFCSIHR  294 (301)
T ss_dssp             -----------------------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------------CCCCCccchHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                         01234456778999999999999999999999964

>d1xkka_ d.144.1.7 (A:) EGF receptor tyrosine kinase, Erbb-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: EGF receptor tyrosine kinase, Erbb-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-37  Score=279.39  Aligned_cols=217  Identities=14%  Similarity=0.117  Sum_probs=170.5

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChhhhhH
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNESSRDN  102 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~~~~~  102 (358)
                      .||+|.+....+....+.+.++.+...++  .|++++.+.....  +...+++|||+.+|+|.+++.. ...+++..+..
T Consensus        40 ~vavK~~~~~~~~~~~~~~~~E~~~l~~l--~HpnIv~l~g~~~--~~~~~~v~e~~~~~~l~~~~~~~~~~~~~~~~~~  115 (317)
T d1xkka_          40 PVAIKELREATSPKANKEILDEAYVMASV--DNPHVCRLLGICL--TSTVQLITQLMPFGCLLDYVREHKDNIGSQYLLN  115 (317)
T ss_dssp             EEEEEEECC----CTHHHHHHHHHHHHHC--CCTTBCCEEEEEE--SSSEEEEEECCTTCBHHHHHHHTSSSCCHHHHHH
T ss_pred             EEEEEEeccccCHHHHHHHHHHHHHHHhC--CCCCEeeEEEEEe--cCCeeEEEEeccCCcccccccccccCCCHHHHHH
Confidence            47888888777777788899998888774  6888888877654  3567899999999999987764 45678889999


Q ss_pred             HHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhHHHhCCCCCcchh
Q 045353          103 EVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPEVLLGSKYSTSAD  173 (358)
Q Consensus       103 ~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE~l~~~~~~~~~D  173 (358)
                      ++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+.....     .....||+.|+|||++.+..|+.++|
T Consensus       116 i~~qi~~gl~yLH~~~iiHrDlKp~NIll~~~~~~kl~DFGla~~~~~~~~~~~~~~~~gt~~y~APE~l~~~~~~~~sD  195 (317)
T d1xkka_         116 WCVQIAKGMNYLEDRRLVHRDLAARNVLVKTPQHVKITDFGLAKLLGAEEKEYHAEGGKVPIKWMALESILHRIYTHQSD  195 (317)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSCCCGGGEEEEETTEEEECCCSHHHHTTTTCC--------CCTTTSCHHHHHHCCCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCcccCcchhhcceeCCCCCeEeeccccceecccccccccccccccCccccChHHHhcCCCChhhh
Confidence            99999999999999999999    9999999999999999999765422     22346899999999999999999999


Q ss_pred             hhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchhhH
Q 045353          174 LWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNKVL  252 (358)
Q Consensus       174 iwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (358)
                      ||||||++|||+| |.+||.+.+.      .+....+..  |.                                     
T Consensus       196 vwS~Gvil~el~t~g~~p~~~~~~------~~~~~~i~~--~~-------------------------------------  230 (317)
T d1xkka_         196 VWSYGVTVWELMTFGSKPYDGIPA------SEISSILEK--GE-------------------------------------  230 (317)
T ss_dssp             HHHHHHHHHHHHTTSCCTTTTSCG------GGHHHHHHH--TC-------------------------------------
T ss_pred             hhhHHHHHHHHHHCCCCCCCCCCH------HHHHHHHHc--CC-------------------------------------
Confidence            9999999999998 7889865441      111111111  00                                     


Q ss_pred             HhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcCc
Q 045353          253 VEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSHP  291 (358)
Q Consensus       253 ~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~hp  291 (358)
                        ....+..+++.+.+||.+||+.||++|||+.|+++|.
T Consensus       231 --~~~~p~~~~~~~~~li~~cl~~dP~~RPs~~eil~~l  267 (317)
T d1xkka_         231 --RLPQPPICTIDVYMIMVKCWMIDADSRPKFRELIIEF  267 (317)
T ss_dssp             --CCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHH
T ss_pred             --CCCCCcccCHHHHHHHHHhCCCChhhCcCHHHHHHHH
Confidence              1123455678899999999999999999999999873

>d1r0pa_ d.144.1.7 (A:) Hepatocyte growth factor receptor, c-MET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Hepatocyte growth factor receptor, c-MET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.7e-37  Score=274.80  Aligned_cols=220  Identities=15%  Similarity=0.084  Sum_probs=175.2

Q ss_pred             cccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccccc-ccChhhhh
Q 045353           23 ASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSV-VNNESSRD  101 (358)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~-~~~~~~~~  101 (358)
                      ..||+|.+.........+++.++.+...++  .|++++.+.......++..|+|||||++|+|.+++.... ......+.
T Consensus        56 ~~vAvK~~~~~~~~~~~~~~~~E~~~l~~l--~HpnIv~~~g~~~~~~~~~~lv~E~~~~g~l~~~~~~~~~~~~~~~~~  133 (311)
T d1r0pa_          56 IHCAVKSLNRITDIGEVSQFLTEGIIMKDF--SHPNVLSLLGICLRSEGSPLVVLPYMKHGDLRNFIRNETHNPTVKDLI  133 (311)
T ss_dssp             EEEEEEEECCCCCHHHHHHHHHHHHHHHTC--CCTTBCCCCEEEEETTTEEEEEEECCTTCBHHHHHHCTTCCCBHHHHH
T ss_pred             EEEEEEEECcccCHHHHHHHHHHHHHHHhC--CCCCEeEEeEEEEecCCceEEEEEEeecCchhhhhccccccchHHHHH
Confidence            368999998777788888999999888874  688999888765555678899999999999999887543 45667888


Q ss_pred             HHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-------CCCCccCCCcchhHHHhCCCCCc
Q 045353          102 NEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-------FTNDIQTRQYRCPEVLLGSKYST  170 (358)
Q Consensus       102 ~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-------~~~~~gt~~Y~aPE~l~~~~~~~  170 (358)
                      .++.|++.|+.|+|..+++||    +|||+++++.+||+|||+++.....       .....||+.|+|||++.+..++.
T Consensus       134 ~i~~qia~gL~~lH~~~iiHrDLK~~NILl~~~~~~kL~DFG~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~  213 (311)
T d1r0pa_         134 GFGLQVAKGMKFLASKKFVHRDLAARNCMLDEKFTVKVADFGLARDMYDKEFDSVHNKTGAKLPVKWMALESLQTQKFTT  213 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCSCCSGGGEEECTTCCEEECSSGGGCCTTTTTCCCTTCTTCSSCCGGGSCHHHHHHCCCCH
T ss_pred             HHHHHHHHhhhhhcccCcccCCccHHhEeECCCCCEEEecccchhhccccccccceecccccccccccChHHHhcCCCCC
Confidence            999999999999999999999    9999999999999999999765322       22347899999999999999999


Q ss_pred             chhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCcchh
Q 045353          171 SADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWPMNK  250 (358)
Q Consensus       171 ~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (358)
                      ++|||||||++|||++|..||.....     ..+....+..  |.                                   
T Consensus       214 ksDI~SfGivl~El~t~~~p~~~~~~-----~~~~~~~i~~--g~-----------------------------------  251 (311)
T d1r0pa_         214 KSDVWSFGVLLWELMTRGAPPYPDVN-----TFDITVYLLQ--GR-----------------------------------  251 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCSCC-----------CHHHHHT--TC-----------------------------------
T ss_pred             hhHhhhhHHHHHHHHHCCCCCCCCCC-----HHHHHHHHHc--CC-----------------------------------
Confidence            99999999999999998877754321     1111111110  10                                   


Q ss_pred             hHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          251 VLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                          ....+..+++.+.+||.+||+.||++|||+.|+++|
T Consensus       252 ----~~~~p~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~  287 (311)
T d1r0pa_         252 ----RLLQPEYCPDPLYEVMLKCWHPKAEMRPSFSELVSR  287 (311)
T ss_dssp             ----CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             ----CCCCcccCcHHHHHHHHHHcCCCHhHCcCHHHHHHH
Confidence                112234456789999999999999999999999987

>d1p4oa_ d.144.1.7 (A:) Insulin-like growth factor 1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Insulin-like growth factor 1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.7e-36  Score=272.86  Aligned_cols=224  Identities=16%  Similarity=0.175  Sum_probs=179.5

Q ss_pred             cCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc--------
Q 045353           21 SSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS--------   92 (358)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~--------   92 (358)
                      .+..||+|.+....+......+.++.+...++  .|++++....... .....|+|||||++|+|.+++...        
T Consensus        49 ~~~~VAvK~~~~~~~~~~~~~~~~E~~il~~l--~h~nIv~~~~~~~-~~~~~~lv~e~~~~g~l~~~~~~~~~~~~~~~  125 (308)
T d1p4oa_          49 PETRVAIKTVNEAASMRERIEFLNEASVMKEF--NCHHVVRLLGVVS-QGQPTLVIMELMTRGDLKSYLRSLRPAMANNP  125 (308)
T ss_dssp             EEEEEEEEECCTTSCHHHHHHHHHHHHHGGGC--CCTTBCCEEEEEC-SSSSCEEEEECCTTCBHHHHHHHHHHHHHHCT
T ss_pred             CCcEEEEEEECcccChHHHHHHHHHHHHHHHc--CCCCEeeeeeEEe-cCCceeEEEeecCCCCHHHHHHhccccccccc
Confidence            45678999998888888888888988887774  6778888877664 345789999999999999987632        


Q ss_pred             --cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCccCCCcchhH
Q 045353           93 --VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDIQTRQYRCPE  161 (358)
Q Consensus        93 --~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~gt~~Y~aPE  161 (358)
                        ...+..++..++.+++.|+.|+|..+++||    +|||++.++.+||+|||+|+.....     ....+||+.|+|||
T Consensus       126 ~~~~~~~~~~~~i~~~ia~gl~~LH~~~ivHrDlk~~NiLld~~~~~Kl~DFGla~~~~~~~~~~~~~~~~~t~~y~aPe  205 (308)
T d1p4oa_         126 VLAPPSLSKMIQMAGEIADGMAYLNANKFVHRDLAARNCMVAEDFTVKIGDFGMTRDIYETDYYRKGGKGLLPVRWMSPE  205 (308)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHHHHHHHTTCBCSCCSGGGEEECTTCCEEECCTTCCCGGGGGGCEEGGGSSEECGGGCCHH
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHhhCCeeeceEcCCceeecCCceEEEeecccceeccCCcceeeccceecccccCCHH
Confidence              234677889999999999999999999999    9999999999999999999765432     23447899999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCC-cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .+.+..|+.++|||||||++|||++|. +||.+.+      ..+.+..+..  +.                         
T Consensus       206 ~l~~~~~~~~~Dv~S~G~il~El~t~~~~p~~~~~------~~~~~~~i~~--~~-------------------------  252 (308)
T d1p4oa_         206 SLKDGVFTTYSDVWSFGVVLWEIATLAEQPYQGLS------NEQVLRFVME--GG-------------------------  252 (308)
T ss_dssp             HHHHCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSC------HHHHHHHHHT--TC-------------------------
T ss_pred             HHccCCCCcccccccHHHHHHHHHhCCCCCCCCCC------HHHHHHHHHh--CC-------------------------
Confidence            999999999999999999999999985 7775443      3333333321  00                         


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc------CcCcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS------HPWMS  294 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~------hpwf~  294 (358)
                                    ....+..+++.+.+||.+||+.||++|||+.|+++      +|+|+
T Consensus       253 --------------~~~~p~~~~~~l~~li~~cl~~~P~~RPs~~~il~~L~~~~~~~~~  298 (308)
T d1p4oa_         253 --------------LLDKPDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEEMEPGFR  298 (308)
T ss_dssp             --------------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGGSCTTHH
T ss_pred             --------------CCCCcccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcCCCCc
Confidence                          11233455678999999999999999999999987      67765

>d1fvra_ d.144.1.7 (A:) Tie2 kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Tie2 kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-37  Score=277.60  Aligned_cols=218  Identities=13%  Similarity=0.113  Sum_probs=169.5

Q ss_pred             ccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-----------
Q 045353           24 SKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-----------   92 (358)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-----------   92 (358)
                      .||+|.+....+.+..+.+.++.+...++ ..|++|+.+..... ..+.+|+|||||+||+|.+++...           
T Consensus        39 ~vaiK~~~~~~~~~~~~~~~~E~~~l~~l-~~HpnIv~~~~~~~-~~~~~~iV~ey~~~g~L~~~l~~~~~~~~~~~~~~  116 (309)
T d1fvra_          39 DAAIKRMKEYASKDDHRDFAGELEVLCKL-GHHPNIINLLGACE-HRGYLYLAIEYAPHGNLLDFLRKSRVLETDPAFAI  116 (309)
T ss_dssp             EEEEEEEECC------CHHHHHHHHHTTC-CCCTTBCCEEEEEE-ETTEEEEEECCCTTCBHHHHHHTTCHHHHCHHHHH
T ss_pred             EEEEEEECcccChHHHHHHHHHHHHHHhc-cCCCCEeeEEEEEe-cCCeeEEEEEecCCCcHHHHHhhccccccchhhhc
Confidence            57899988888888888888888877774 26888888887654 356789999999999999988643           


Q ss_pred             -----cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC--CCCccCCCcchhH
Q 045353           93 -----VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF--TNDIQTRQYRCPE  161 (358)
Q Consensus        93 -----~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~--~~~~gt~~Y~aPE  161 (358)
                           ..+++.++..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+|+......  ....||..|+|||
T Consensus       117 ~~~~~~~l~~~~~~~~~~qia~gl~~lH~~~iiHrDlkp~NIL~~~~~~~kl~DfG~a~~~~~~~~~~~~~gt~~y~aPE  196 (309)
T d1fvra_         117 ANSTASTLSSQQLLHFAADVARGMDYLSQKQFIHRDLAARNILVGENYVAKIADFGLSRGQEVYVKKTMGRLPVRWMAIE  196 (309)
T ss_dssp             HTTBSCSSCHHHHHHHHHHHHHHHHHHHHTTEECSCCSGGGEEECGGGCEEECCTTCEESSCEECCC----CCTTTCCHH
T ss_pred             cccccCCCCHHHHHHHHHHHHHHHHhhhcCCccccccccceEEEcCCCceEEccccccccccccccccceecCCcccchH
Confidence                 457888999999999999999999999999    99999999999999999997655432  3447899999999


Q ss_pred             HHhCCCCCcchhhhhhhHHHHhhhcCC-cccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhh
Q 045353          162 VLLGSKYSTSADLWSFACICFELATGD-VLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHI  240 (358)
Q Consensus       162 ~l~~~~~~~~~DiwSlGvil~ell~g~-~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~  240 (358)
                      .+.+..|+.++|||||||++|+|++|. +||.+.+      ..+....+.+  +                          
T Consensus       197 ~l~~~~~~~~sDvwSfGvil~ell~~~~~p~~~~~------~~~~~~~i~~--~--------------------------  242 (309)
T d1fvra_         197 SLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT------CAELYEKLPQ--G--------------------------  242 (309)
T ss_dssp             HHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHGGG--T--------------------------
T ss_pred             HhccCCCCccceeehhHHHHHHHHhcCCCCCCCCC------HHHHHHHHHh--c--------------------------
Confidence            999999999999999999999999975 5675433      2222211110  0                          


Q ss_pred             hhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          241 RRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                   .....+..+++++.+||.+||+.||++|||++||++|
T Consensus       243 -------------~~~~~~~~~~~~~~~li~~cl~~dP~~RPs~~eil~~  279 (309)
T d1fvra_         243 -------------YRLEKPLNCDDEVYDLMRQCWREKPYERPSFAQILVS  279 (309)
T ss_dssp             -------------CCCCCCTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHH
T ss_pred             -------------CCCCCCccCCHHHHHHHHHHcCCChhHCcCHHHHHHH
Confidence                         0123345567899999999999999999999999987

>d1t46a_ d.144.1.7 (A:) c-KIT receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: c-KIT receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-36  Score=271.81  Aligned_cols=222  Identities=15%  Similarity=0.152  Sum_probs=176.7

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-------
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-------   92 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-------   92 (358)
                      .++..||+|.+........+..+.++......+ ..|++++........ ....|+|||||+||+|.+++...       
T Consensus        51 ~~~~~vAvK~i~~~~~~~~~~~~~~E~~~~~~l-~~HpnIv~~~g~~~~-~~~~~lvmE~~~~g~l~~~l~~~~~~~~~~  128 (311)
T d1t46a_          51 DAAMTVAVKMLKPSAHLTEREALMSELKVLSYL-GNHMNIVNLLGACTI-GGPTLVITEYCCYGDLLNFLRRKRDSFICS  128 (311)
T ss_dssp             TCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHH-CCCTTBCCEEEEECS-SSSCEEEEECCTTEEHHHHHHHTTTTC---
T ss_pred             CCCeEEEEEEECcccCHHHHHHHHHHHHHHHhc-cCCCCEEEEEEEEee-CCEEEEEEEcCCCCCHHHHHHhcccccccc
Confidence            456688999999888888888888887777764 368888888877654 35689999999999999987532       


Q ss_pred             -----------cccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC-----CCCCc
Q 045353           93 -----------VVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ-----FTNDI  152 (358)
Q Consensus        93 -----------~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~-----~~~~~  152 (358)
                                 ..+++..+..++.|++.|+.|+|+.+++||    +|||++.++.+||+|||+++.....     .+..+
T Consensus       129 ~~~~~~~~~~~~~l~~~~~~~~~~qi~~gl~~LH~~~ivHrDLKp~NIl~~~~~~~ki~DfG~~~~~~~~~~~~~~~~~~  208 (311)
T d1t46a_         129 KTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASKNCIHRDLAARNILLTHGRITKICDFGLARDIKNDSNYVVKGNAR  208 (311)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHHHHHHHHTTCCCSCCSGGGEEEETTTEEEECCCGGGSCTTSCTTSEECSSSE
T ss_pred             ccccccccccccCCCHHHHHHHHHHHHHHHHHHHhCCeeecccccccccccccCcccccccchheeccCCCcceEeeecc
Confidence                       247788999999999999999999999998    9999999999999999999875432     23457


Q ss_pred             cCCCcchhHHHhCCCCCcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhh
Q 045353          153 QTRQYRCPEVLLGSKYSTSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFF  231 (358)
Q Consensus       153 gt~~Y~aPE~l~~~~~~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~  231 (358)
                      ||+.|+|||++.+..++.++|||||||++|+|++ |.+||.+.+.      ...+..+... +.                
T Consensus       209 gt~~y~aPE~~~~~~~~~~~DIwS~G~~l~ellt~g~p~~~~~~~------~~~~~~~i~~-~~----------------  265 (311)
T d1t46a_         209 LPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSSPYPGMPV------DSKFYKMIKE-GF----------------  265 (311)
T ss_dssp             ECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCS------SHHHHHHHHH-TC----------------
T ss_pred             cChHHcCHHHhcCCCCCCcccccchHHHHHHHHhCCCCCCCCCCH------HHHHHHHHhc-CC----------------
Confidence            8999999999999999999999999999999998 5666654431      1222222211 10                


Q ss_pred             hccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          232 NRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                             ....+...+..+.+||.+||+.||++|||++|+++
T Consensus       266 -----------------------~~~~~~~~~~~l~~Li~~cl~~dP~~RPs~~~il~  300 (311)
T d1t46a_         266 -----------------------RMLSPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQ  300 (311)
T ss_dssp             -----------------------CCCCCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred             -----------------------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHHH
Confidence                                   01123345678999999999999999999999985

>d1u46a_ d.144.1.7 (A:) Activated CDC42 kinase 1, ACK1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Activated CDC42 kinase 1, ACK1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.9e-37  Score=269.50  Aligned_cols=217  Identities=18%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             CcccccccccCccchh--hhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCccccccc-ccccChh
Q 045353           22 SASKENKSLYGDLTKN--QKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQND-SVVNNES   98 (358)
Q Consensus        22 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~-~~~~~~~   98 (358)
                      +..||+|.+......+  ..+++.++.+...+.  .|++++..+....  +..+|+|||||++|++.+++.. ...+++.
T Consensus        36 ~~~vAiK~l~~~~~~~~~~~~~~~~Ei~~l~~l--~H~nIv~~~g~~~--~~~~~lv~e~~~~~~l~~~~~~~~~~l~~~  111 (273)
T d1u46a_          36 TVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSL--DHRNLIRLYGVVL--TPPMKMVTELAPLGSLLDRLRKHQGHFLLG  111 (273)
T ss_dssp             EEEEEEEC--------CHHHHHHHHHHHHHHHC--CCTTBCCEEEEEC--SSSCEEEEECCTTCBHHHHHHHHGGGSCHH
T ss_pred             EEEEEEEEEChhhcCCHHHHHHHHHHHHHHHhC--CCCCEEEEEEEEe--ecchheeeeeecCcchhhhhhcccCCCCHH
Confidence            3468999998765433  346777887777664  7888998887664  3468999999999999987664 3468889


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCC------CCCCccCCCcchhHHHhCCCC
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQ------FTNDIQTRQYRCPEVLLGSKY  168 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~------~~~~~gt~~Y~aPE~l~~~~~  168 (358)
                      .+..++.|++.|+.|+|..+++||    +|||++.++.+||+|||+|+.....      .....||..|+|||++.+..|
T Consensus       112 ~~~~~~~qi~~gl~ylH~~~iiHrDikp~NIll~~~~~vkl~DfGl~~~~~~~~~~~~~~~~~~~~~~~~aPE~~~~~~~  191 (273)
T d1u46a_         112 TLSRYAVQVAEGMGYLESKRFIHRDLAARNLLLATRDLVKIGDFGLMRALPQNDDHYVMQEHRKVPFAWCAPESLKTRTF  191 (273)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTEECSCCCGGGEEEEETTEEEECCCTTCEECCC-CCEEEC-----CCGGGCCHHHHHHCEE
T ss_pred             HHHHHHHHHHHHHHHhhhCCEeeeeecHHHhccccccceeeccchhhhhcccCCCcceecCccccCcccCCHHHHhCCCC
Confidence            999999999999999999999999    9999999999999999999875432      223467889999999999999


Q ss_pred             CcchhhhhhhHHHHhhhc-CCcccCCCCCCCCCCcHHHHHHHHHHhCCCchhhhcCCCCChhhhhccCCchhhhhccCCc
Q 045353          169 STSADLWSFACICFELAT-GDVLFDPHSGDNYDKDEDHLALMMELLGMMPRKIALGGRYSRDFFNRHGDLRHIRRLRFWP  247 (358)
Q Consensus       169 ~~~~DiwSlGvil~ell~-g~~pf~~~~~~~~~~~~~~l~~i~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (358)
                      +.++|||||||++|||++ |.+||.+.+      ..+.+..+.+- +.                                
T Consensus       192 ~~~~Di~S~Gvil~emlt~G~~Pf~~~~------~~~~~~~i~~~-~~--------------------------------  232 (273)
T d1u46a_         192 SHASDTWMFGVTLWEMFTYGQEPWIGLN------GSQILHKIDKE-GE--------------------------------  232 (273)
T ss_dssp             EHHHHHHHHHHHHHHHHTTSCCTTTTCC------HHHHHHHHHTS-CC--------------------------------
T ss_pred             CcchhhhhhHHHHHHHHhCCCCCCCCcC------HHHHHHHHHhC-CC--------------------------------
Confidence            999999999999999998 899997554      33333333211 00                                


Q ss_pred             chhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHh
Q 045353          248 MNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCL  288 (358)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL  288 (358)
                             ..+.+..+++.+.+||.+||..||++|||+.|++
T Consensus       233 -------~~~~~~~~~~~l~~li~~cl~~dp~~RPt~~ei~  266 (273)
T d1u46a_         233 -------RLPRPEDCPQDIYNVMVQCWAHKPEDRPTFVALR  266 (273)
T ss_dssp             -------CCCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred             -------CCCCcccccHHHHHHHHHHcCCChhHCcCHHHHH
Confidence                   1123345577899999999999999999999986

>d1vjya_ d.144.1.7 (A:) Type I TGF-beta receptor R4 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Type I TGF-beta receptor R4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-35  Score=266.65  Aligned_cols=235  Identities=16%  Similarity=0.108  Sum_probs=160.0

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCC---CCCCcccccCCCCCcccccccccccC
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSS---PDNFSVDTIPNGVSVEERQNDSVVNN   96 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~iv~e~~~gg~L~~~~~~~~~~~   96 (358)
                      .+|..||+|.+..    +..++..++..........|++++.........+   ..+|+|||||++|+|.+++... .++
T Consensus        24 ~~g~~vAvK~~~~----~~~~~~~~e~ei~~~~~~~HpnIv~~~~~~~~~~~~~~~~~lv~Ey~~~g~L~~~l~~~-~l~   98 (303)
T d1vjya_          24 WRGEEVAVKIFSS----REERSWFREAEIYQTVMLRHENILGFIAADNKDNGTWTQLWLVSDYHEHGSLFDYLNRY-TVT   98 (303)
T ss_dssp             ETTEEEEEEEECG----GGHHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECSSSEEEEEEEECCTTCBHHHHHHHC-CBC
T ss_pred             ECCEEEEEEEECc----cchhHHHHHHHHHHHhhCCCCcCcceEEEEEeCCCcceEEEEEEecccCCCHHHHHhcC-CCC
Confidence            4688899998753    2334444454444333467888888776654332   3579999999999999999764 467


Q ss_pred             hhhhhHHHHhhhhccccccC--------CCCCCc----ccccccCCCcEEEEecCCceecCC-------CCCCCccCCCc
Q 045353           97 ESSRDNEVKNTSQGVKGHRR--------PSRATR----KNLLAAVDVQCKLVDFGNACWTHK-------QFTNDIQTRQY  157 (358)
Q Consensus        97 ~~~~~~~l~~~~~~~~~~h~--------~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~-------~~~~~~gt~~Y  157 (358)
                      +.++..+..+++.|+.++|.        ++++||    +||||+.++.+||+|||+|+....       .....+||+.|
T Consensus        99 ~~~~~~~~~~ia~gl~~lH~~~~~~~~~~~IvHrDlKp~NILl~~~~~~Kl~DFGl~~~~~~~~~~~~~~~~~~~gt~~y  178 (303)
T d1vjya_          99 VEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIADLGLAVRHDSATDTIDIAPNHRVGTKRY  178 (303)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCBCSTTCBCEEECSCCCGGGEEECTTSCEEECCCTTCEEEETTTTEECC----CCSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhccCCCeeccccCccceEEcCCCCeEEEecCccccccCCCcceeccccceecccCc
Confidence            77878888899988888885        688999    999999999999999999976432       23456899999


Q ss_pred             chhHHHhCCC------CCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCc-----HHHHHHHHHHhCCCchhhhcCCCC
Q 045353          158 RCPEVLLGSK------YSTSADLWSFACICFELATGDVLFDPHSGDNYDKD-----EDHLALMMELLGMMPRKIALGGRY  226 (358)
Q Consensus       158 ~aPE~l~~~~------~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~-----~~~l~~i~~~~g~~p~~~~~~~~~  226 (358)
                      +|||++.+..      ++.++|||||||++|||++|.+||...........     ......+....-.           
T Consensus       179 ~aPE~~~~~~~~~~~~~~~k~Di~S~Gvvl~el~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  247 (303)
T d1vjya_         179 MAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLPYYDLVPSDPSVEEMRKVVCE-----------  247 (303)
T ss_dssp             CCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCTTTTTSCSSCCHHHHHHHHTT-----------
T ss_pred             CChhhccccccccCCCcCcchhhhhhHHHHHHHhhCCCCCCcccccccchhhcccccchHHHHHHHHhc-----------
Confidence            9999998643      57789999999999999999988854332110000     0000000000000           


Q ss_pred             ChhhhhccCCchhhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhcC
Q 045353          227 SRDFFNRHGDLRHIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLSH  290 (358)
Q Consensus       227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~h  290 (358)
                                      ....+.   . ............+.+|+.+||+.||++|||+.|++++
T Consensus       248 ----------------~~~~p~---~-~~~~~~~~~~~~l~~li~~cl~~dp~~Rps~~ei~~~  291 (303)
T d1vjya_         248 ----------------QKLRPN---I-PNRWQSCEALRVMAKIMRECWYANGAARLTALRIKKT  291 (303)
T ss_dssp             ----------------SCCCCC---C-CGGGGGCHHHHHHHHHHHTTCCSSGGGSCCHHHHHHH
T ss_pred             ----------------cccCCC---C-CcccCChHHHHHHHHHHHHHcccCHhHCcCHHHHHHH
Confidence                            000000   0 0001122345678999999999999999999999763

>d1ckia_ d.144.1.7 (A:) Casein kinase-1, CK1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=2.2e-34  Score=258.08  Aligned_cols=230  Identities=12%  Similarity=-0.008  Sum_probs=165.1

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccccccChhh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDSVVNNESS   99 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~~~~~~~~   99 (358)
                      .+|..||+|++.....   ..++.++.+....+  .+++++.............|+|||||.|+.+..+......+++..
T Consensus        30 ~~~~~vAvK~~~~~~~---~~~~~~E~~i~~~l--~~~~~i~~~~~~~~~~~~~~ivme~~~~~l~~~~~~~~~~~~~~~  104 (299)
T d1ckia_          30 AAGEEVAIKLECVKTK---HPQLHIESKIYKMM--QGGVGIPTIRWCGAEGDYNVMVMELLGPSLEDLFNFCSRKFSLKT  104 (299)
T ss_dssp             TTTEEEEEEEEESCTT---SCCHHHHHHHHHHS--TTSTTCCCEEEEEEETTEEEEEEECCCCBHHHHHHHTTTCCCHHH
T ss_pred             CCCCEEEEEEEchhcc---CHHHHHHHHHHHHc--cCCCcccEEEEEEecCCEEEEEEEEcCCchhhhhhhccCCCcHHH
Confidence            5577899998775432   33456666665553  344444444444445567899999997665555555666789999


Q ss_pred             hhHHHHhhhhccccccCCCCCCc----cccccc---CCCcEEEEecCCceecCCC----------CCCCccCCCcchhHH
Q 045353          100 RDNEVKNTSQGVKGHRRPSRATR----KNLLAA---VDVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRCPEV  162 (358)
Q Consensus       100 ~~~~l~~~~~~~~~~h~~~~~hr----~NILl~---~~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~aPE~  162 (358)
                      +..++.|++.|+.|+|+.+++||    +|||++   .+..+||+|||+|+.....          ....+||+.|+|||+
T Consensus       105 ~~~~~~qi~~~l~~lH~~~iiHrDiKp~NIl~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~  184 (299)
T d1ckia_         105 VLLLADQMISRIEYIHSKNFIHRDVKPDNFLMGLGKKGNLVYIIDFGLAKKYRDARTHQHIPYRENKNLTGTARYASINT  184 (299)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEECSCCCGGGEEECCGGGTTCEEECCCSSCEECBCTTTCCBCCCCBCCSCCCCSSSCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCeeeccCCHhhccccccCCCceeeeeccCcceeccccccccceeccccCCcCCCccccCHHH
Confidence            99999999999999999999999    999875   4567999999999765321          234589999999999


Q ss_pred             HhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHH-HhCCCchhhhcCCCCChhhhhccCCchhhh
Q 045353          163 LLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMME-LLGMMPRKIALGGRYSRDFFNRHGDLRHIR  241 (358)
Q Consensus       163 l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~-~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~  241 (358)
                      +.+..|+.++|||||||++|+|++|..||.........   ........ ....++                        
T Consensus       185 ~~~~~~~~~~DiwSlG~~l~el~tg~~P~~~~~~~~~~---~~~~~~~~~~~~~~~------------------------  237 (299)
T d1ckia_         185 HLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKR---QKYERISEKKMSTPI------------------------  237 (299)
T ss_dssp             HTTBCCCHHHHHHHHHHHHHHHHHSSCTTCCCC----------HHHHHHHHHHSCH------------------------
T ss_pred             HhCCCCCChhhEEecCHHHHHHHhCCCcccccchHHHH---HHHHHhhcccCCCCh------------------------
Confidence            99999999999999999999999999999765432211   11111100 000000                        


Q ss_pred             hccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHH---HHhcCcCcCC
Q 045353          242 RLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAA---QCLSHPWMSA  295 (358)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~---elL~hpwf~~  295 (358)
                                    ......+++++.+||..||..||++||+++   ++|+|+|.+.
T Consensus       238 --------------~~~~~~~p~~~~~li~~cl~~~p~~RP~~~~i~~~l~~~~~~~  280 (299)
T d1ckia_         238 --------------EVLCKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ  280 (299)
T ss_dssp             --------------HHHTTTSCHHHHHHHHHHHHSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred             --------------hHhccCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHHHc
Confidence                          011234567899999999999999999987   4578887754

>d1csna_ d.144.1.7 (A:) Casein kinase-1, CK1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: Protein kinases, catalytic subunit
domain: Casein kinase-1, CK1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.97  E-value=1.5e-32  Score=245.13  Aligned_cols=223  Identities=13%  Similarity=0.069  Sum_probs=160.9

Q ss_pred             ccCcccccccccCccchhhhHHhhHHHHHhhhhccCCCccccccCCCCCCCCCCCcccccCCCCCcccccccc-cccChh
Q 045353           20 ESSASKENKSLYGDLTKNQKKKVKKKAKKAAQGCAGTEAFDESEADSKPSSPDNFSVDTIPNGVSVEERQNDS-VVNNES   98 (358)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~e~~~gg~L~~~~~~~-~~~~~~   98 (358)
                      .+|..+|+|++.....   ...++++.+....+. ++++++.+.... ......|+||||| ||+|.+++... ..++..
T Consensus        28 ~~~~~vAvK~~~~~~~---~~~~~~e~~~~~~l~-~~~~i~~~~~~~-~~~~~~~~vme~~-~~~l~~~~~~~~~~~~~~  101 (293)
T d1csna_          28 LNNQQVAIKFEPRRSD---APQLRDEYRTYKLLA-GCTGIPNVYYFG-QEGLHNVLVIDLL-GPSLEDLLDLCGRKFSVK  101 (293)
T ss_dssp             TTTEEEEEEEEECCTT---SCCHHHHHHHHHHTT-TCTTCCCEEEEE-EETTEEEEEEECC-CCBHHHHHHHTTTCCCHH
T ss_pred             CCCCEEEEEEEccccC---cHHHHHHHHHHHHhc-CCCCCCEEEEEe-ecCCccEEEEEec-CCCHHHHHHhhccchhhH
Confidence            4678899998865433   233455555555443 333444443332 3356779999999 68888877654 468888


Q ss_pred             hhhHHHHhhhhccccccCCCCCCc----ccccccC-----CCcEEEEecCCceecCCC----------CCCCccCCCcch
Q 045353           99 SRDNEVKNTSQGVKGHRRPSRATR----KNLLAAV-----DVQCKLVDFGNACWTHKQ----------FTNDIQTRQYRC  159 (358)
Q Consensus        99 ~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~-----~~~vkL~DFG~a~~~~~~----------~~~~~gt~~Y~a  159 (358)
                      .+..++.+++.++.++|+.|++||    +|||++.     ++.+||+|||+|+.....          ....+||+.|||
T Consensus       102 ~~~~i~~q~~~~l~~lH~~giiHrDiKp~Nili~~~~~~~~~~vkl~DFG~a~~~~~~~~~~~~~~~~~~~~~GT~~y~a  181 (293)
T d1csna_         102 TVAMAAKQMLARVQSIHEKSLVYRDIKPDNFLIGRPNSKNANMIYVVDFGMVKFYRDPVTKQHIPYREKKNLSGTARYMS  181 (293)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTEECCCCCGGGEEECCSSSTTTTCEEECCCTTCEESBCTTTCCBCCCCCCCCCCSCTTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCceeccCCccceeecCcccccCCceEEcccceeEEcccCccccceeecccCceEEchhhcC
Confidence            999999999999999999999999    9999974     578999999999764321          234589999999


Q ss_pred             hHHHhCCCCCcchhhhhhhHHHHhhhcCCcccCCCCCCCCCCcHHHHHHHHHHh-CCCchhhhcCCCCChhhhhccCCch
Q 045353          160 PEVLLGSKYSTSADLWSFACICFELATGDVLFDPHSGDNYDKDEDHLALMMELL-GMMPRKIALGGRYSRDFFNRHGDLR  238 (358)
Q Consensus       160 PE~l~~~~~~~~~DiwSlGvil~ell~g~~pf~~~~~~~~~~~~~~l~~i~~~~-g~~p~~~~~~~~~~~~~~~~~~~~~  238 (358)
                      ||++.+..|+.++|||||||++|+|++|..||.+.....   .......+.... ..++.                    
T Consensus       182 PE~~~~~~~~~~~DiwSlG~~l~elltg~~Pf~~~~~~~---~~~~~~~i~~~~~~~~~~--------------------  238 (293)
T d1csna_         182 INTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAAT---NKQKYERIGEKKQSTPLR--------------------  238 (293)
T ss_dssp             HHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCC---HHHHHHHHHHHHHHSCHH--------------------
T ss_pred             HHHhcCCCCChHHHHHHhhHHHHHHHhCCCcCCCccchh---HHHHHHHHHhccCCCChH--------------------
Confidence            999999999999999999999999999999997654322   222222221110 01100                    


Q ss_pred             hhhhccCCcchhhHHhhhcCChhhHHHHHHHHHhccccCCCCCCCHHHHhc
Q 045353          239 HIRRLRFWPMNKVLVEKYDFNERDAKDMADFLVPILDFVPEKRPTAAQCLS  289 (358)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~ta~elL~  289 (358)
                                        .....+++++.+|+..|+..+|++||+.+.+.+
T Consensus       239 ------------------~l~~~~p~~l~~ii~~~~~~~~~~rP~y~~l~~  271 (293)
T d1csna_         239 ------------------ELCAGFPEEFYKYMHYARNLAFDATPDYDYLQG  271 (293)
T ss_dssp             ------------------HHTTTSCHHHHHHHHHHHHCCTTCCCCHHHHHH
T ss_pred             ------------------HhcCCCCHHHHHHHHHHhcCCcccCcCHHHHHH
Confidence                              112334678999999999999999999776643

>d1zara2 d.144.1.9 (A:91-281) Rio2 serine protein kinase C-terminal domain {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Protein kinase-like (PK-like)
superfamily: Protein kinase-like (PK-like)
family: RIO1-like kinases
domain: Rio2 serine protein kinase C-terminal domain
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.24  E-value=2e-13  Score=112.36  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=67.4

Q ss_pred             CCcccccCCCCCcccccccccccChhhhhHHHHhhhhccccccCCCCCCc----ccccccCCCcEEEEecCCceecCCCC
Q 045353           73 NFSVDTIPNGVSVEERQNDSVVNNESSRDNEVKNTSQGVKGHRRPSRATR----KNLLAAVDVQCKLVDFGNACWTHKQF  148 (358)
Q Consensus        73 ~~iv~e~~~gg~L~~~~~~~~~~~~~~~~~~l~~~~~~~~~~h~~~~~hr----~NILl~~~~~vkL~DFG~a~~~~~~~  148 (358)
                      .++||||++++.+.++       .......++.+++.++.++|..+++|+    +|||++++ .++|+|||.|.......
T Consensus        85 ~~lvme~~~~~~~~~l-------~~~~~~~i~~ql~~~l~~lH~~giiHrDiKP~NILv~~~-~~~liDFG~a~~~~~~~  156 (191)
T d1zara2          85 NAVLMELIDAKELYRV-------RVENPDEVLDMILEEVAKFYHRGIVHGDLSQYNVLVSEE-GIWIIDFPQSVEVGEEG  156 (191)
T ss_dssp             TEEEEECCCCEEGGGC-------CCSCHHHHHHHHHHHHHHHHHTTEECSCCSTTSEEEETT-EEEECCCTTCEETTSTT
T ss_pred             CEEEEEeeccccccch-------hhHHHHHHHHHHHHHHHHHhhCCEEEccCChhheeeeCC-CEEEEECCCcccCCCCC
Confidence            4799999999887654       344456788899999999999999888    99999865 48999999997654221


Q ss_pred             CCCccCCCcchh--H---HHhCCCCCcchhhhhhhH
Q 045353          149 TNDIQTRQYRCP--E---VLLGSKYSTSADLWSFAC  179 (358)
Q Consensus       149 ~~~~gt~~Y~aP--E---~l~~~~~~~~~DiwSlGv  179 (358)
                      .     ..|...  +   -.+...|+.++|+||+.-
T Consensus       157 ~-----~~~l~rd~~~~~~~f~r~y~~~~d~~s~~~  187 (191)
T d1zara2         157 W-----REILERDVRNIITYFSRTYRTEKDINSAID  187 (191)
T ss_dssp             H-----HHHHHHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_pred             c-----HHHHHHHHHHHHHHHcCCCCCcccHHHHHH
Confidence            1     112221  1   122346889999999754